Psyllid ID: psy5252

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
Protein Sequence
MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFLNLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLVANAMLPSSLAPSLPFSSSNSTSLPLVSSLDETAHRSDEFLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLLGSLYIVQDRARANREIAGEDNPASNEDR
Secondary Structure (PSIPRED)
cEEEcccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHEEHEEEcccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHccccHHHHHHHHHHEEccHcHHHHHHHHHHHHHHHccHHHHHEEccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
mvgigeasystiaptiISDLFVKDLRSQMLAFFYFAIpigsglgyivGSTAFsvmgawpwslrvtPVLGACAVLLILFFmedpergeaegrvteerTSFGEDIRALCKNHRETWIFLNLNWSIVADMTLYVVLPLRRSTAEAFQILISHafgdagspYLIGLLSEMFRHSLQLGASTLVAnamlpsslapslpfsssnstslplvssldetahrsdeflahksdeflaHKSDEFLALQYALFITSFIEVLGGIFFLLGSLYIVQDRARAnreiagednpasnedr
Flexible Loop (DISEMBL)
mvgigeasystiaptIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFmedpergeaegrvteertsfgEDIRALCKNHRETWIFLNLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLVANAMLPSSLAPSLPFSSSNSTSLPLVSSLDETAHRSDEFLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLLGSLYIVQDRARANreiagednpasnedr
Low Complexity Region (SEG)
MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFLNLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLVANAMlpsslapslpfsssnstslplvsslDETAHRSDEFLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLLGSLYIVQDRARANREIAGEDNPASNEDR
Disordered region (IsUnstruct)
*******SYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME*****************FGEDIRALCKNHRETWIFLNLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLVANA******************************************EFLAHKSDEFLALQYALFITSFIEVLGGIFFLLGSLYIVQD********************
Disordered Region (DISOPRED)
MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME******************GEDIRALCKNHRETWIFLNLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLVANAMLPSSLAPSLPFSSSNSTSLPLVSSLDETAHRSDEFLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLLGSLYIVQDRARA****************
Disordered Region (DISEMBL)
MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDPER*************FGEDIRALCKNHRETWIFLNLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLVANAMLPSSLA***************VSSLDETAHRSDEFLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLLGSLYIVQDRARANREIA***********
Disordered Region (DISPRO)
MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDPER***********TSFGEDIRALCKNHRETWIFLNLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLVANAMLPSSLAPSLPFSSSNSTSLPLVSSLDETAHRSDEFLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLLGSLYIVQDRARANRE*************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFLNLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLVANAMLPSSLAPSLPFSSSNSTSLPLVSSLDETAHRSDEFLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLLGSLYIVQDRARANREIAGEDNPASNEDR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	285	2.2.26 [Sep-21-2011]
Q9GQQ0	605	Protein spinster OS=Droso	yes	N/A	0.382	0.180	0.636	5e-34
Q91VM4	549	Protein spinster homolog	yes	N/A	0.950	0.493	0.334	1e-32
B0JZE1	513	Protein spinster homolog	yes	N/A	0.926	0.514	0.336	2e-32
Q7ZU13	506	Protein spinster homolog	yes	N/A	0.382	0.215	0.585	8e-31
Q8IVW8	549	Protein spinster homolog	yes	N/A	0.498	0.258	0.486	8e-28
A2SWM2	504	Protein spinster homolog	no	N/A	0.407	0.230	0.524	5e-27
Q5XGK0	526	Protein spinster homolog	N/A	N/A	0.442	0.239	0.530	2e-26
A8WGF7	526	Protein spinster homolog	no	N/A	0.442	0.239	0.523	1e-25
A2CER7	498	Protein spinster homolog	no	N/A	0.4	0.228	0.521	4e-25
Q08DX7	528	Protein spinster homolog	no	N/A	0.442	0.238	0.519	2e-24

>sp|Q9GQQ0|SPIN_DROME Protein spinster OS=Drosophila melanogaster GN=spin PE=1 SV=1

 Score =  145 bits (365), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 70/110 (63%), Positives = 85/110 (77%), Gaps = 1/110 (0%)

Query: 1   MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
           +VGIGEASYSTIAPTIISDLFV D+RS+MLA FYFAIP+GSGLGYIVGS    +   W W
Sbjct: 212 LVGIGEASYSTIAPTIISDLFVHDMRSKMLALFYFAIPVGSGLGYIVGSKTAHLANDWRW 271

Query: 61  SLRVTPVLGACAVLLILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNH 110
           +LRVTP+LG  AV LIL  ++DP RG +EG    E T++ +DI+AL +N 
Sbjct: 272 ALRVTPILGIVAVFLIL-LIKDPVRGHSEGSHNLEATTYKQDIKALVRNR 320

Probable sphingolipid transporter that plays a central role in endosomes and/or lysosomes storage. Involved in TGF-beta-mediated synaptic growth regulation both pre- and postsynaptically via its function in endosomal storage regulation. Also required during oogenesis by regulating yolk spheres storage.
Drosophila melanogaster (taxid: 7227)

>sp|Q91VM4|SPNS2_MOUSE Protein spinster homolog 2 OS=Mus musculus GN=Spns2 PE=2 SV=2

 Score =  140 bits (353), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 113/338 (33%), Positives = 168/338 (49%), Gaps = 67/338 (19%)

Query: 1   MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
           +VGIGEASYSTIAPTII DLF K+ R+ ML+ FYFAIP+GSGLGYI GS+     G W W
Sbjct: 202 LVGIGEASYSTIAPTIIGDLFTKNTRTLMLSVFYFAIPLGSGLGYITGSSVKQAAGDWHW 261

Query: 61  SLRVTPVLGACAVLLILFFMEDPERGEAE--GRVTEERTSFGEDIRALCKNHRETWIFLN 118
           +LRV+PVLG     LIL  +   +RG A+  G   + RTS+  D++AL +N   +++F +
Sbjct: 262 ALRVSPVLGMITGTLILILVPATKRGHADQLGGQLKARTSWLRDMKALIRN--RSYVFSS 319

Query: 119 LNWSIVADMT----LYVVLPLRRS-----TAE-------------------AFQILISHA 150
           L  S V+  T    +++ L L R+     TAE                    F   +   
Sbjct: 320 LATSAVSFATGALGMWIPLYLHRAQVVQKTAETCNSPPCGAKDSLIFGAITCFTGFLGVV 379

Query: 151 FGDAGSPYL-------------IGLL-SEMFRHSLQLGASTLVANAMLPSSLAPSLPFSS 196
            G   + +              +G+L S +F   + + A T +  A +   +  +L FS+
Sbjct: 380 TGAGATRWCRLRTQRADPLVCAVGMLGSAIFICLIFVAAKTSIVGAYICIFVGETLLFSN 439

Query: 197 SNSTS----LPLVSSLDETAHRSDEFLAH-----KSDEFLAHKSD------------EFL 235
              T+      ++ +   TA     F +H      S   +   SD            EFL
Sbjct: 440 WAITADILMYVVIPTRRATAVALQSFTSHLLGDAGSPYLIGFISDLIRQSTKDSPLWEFL 499

Query: 236 ALQYALFITSFIEVLGGIFFLLGSLYIVQDRARANREI 273
           +L YAL +  F+ VLGG+FFL  +L+ + DRA+A +++
Sbjct: 500 SLGYALMLCPFVVVLGGMFFLATALFFLSDRAKAEQQV 537

Sphingolipid transporter required for migration of myocardial precursors. Transports sphingosine 1-phosphate (S1P), a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. Mediates the export of S1P from cells in the extraembryonic yolk syncytial layer (YSL), thereby regulating myocardial precursor migration.

Mus musculus (taxid: 10090)

>sp|B0JZE1|SPNS2_XENTR Protein spinster homolog 2 OS=Xenopus tropicalis GN=spns2 PE=2 SV=1

 Score =  139 bits (351), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 113/336 (33%), Positives = 161/336 (47%), Gaps = 72/336 (21%)

Query: 1   MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
           +VGIGEASYSTIAPTII DLF K+ R+ ML+ FYFAIP+GSGLGYI GS+   V G W W
Sbjct: 163 LVGIGEASYSTIAPTIIGDLFTKNTRTLMLSVFYFAIPLGSGLGYITGSSVKQVAGDWRW 222

Query: 61  SLRVTPVLGACAVLLILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFLNLN 120
           +LRV+PVLG     L+L F+   +RG AE     + +S+  D+R L KN   +++F +L 
Sbjct: 223 ALRVSPVLGVITGTLLLIFVPTAKRGHAE---QLKGSSWIRDMRGLIKNR--SYVFSSLA 277

Query: 121 WSIVADMT--LYVVLPLRRSTAEAFQILI------------SHAFGDAGSPYLIGLL--- 163
            S V+  T  L + +PL    A+  Q  +            S  FG      L G L   
Sbjct: 278 TSTVSFATGALGMWIPLYLYRAQVVQKSVEPCNIPPCSTKDSLIFGAITC--LTGFLGVI 335

Query: 164 -----SEMFRHSLQLGASTLVANAMLPSSLAPSLPFSSSNSTSLP--------------- 203
                ++  R   Q     + A  ML S++   L F ++ S+ +                
Sbjct: 336 IGAGATKWCRRKTQRADPLVCAVGMLGSAIFICLVFVAAKSSIIAAYICIFAGETLLFSN 395

Query: 204 -----------LVSSLDETAHRSDEFLAH-----KSDEFLAHKSD------------EFL 235
                      ++ +   TA     F +H      S   +   SD            EFL
Sbjct: 396 WAITADMLMYVVIPTRRATAVALQSFTSHLLGDAGSPYLIGFISDLIQQSTTKSSLWEFL 455

Query: 236 ALQYALFITSFIEVLGGIFFLLGSLYIVQDRARANR 271
           +L YAL +  F+ VLGG+FFL  +L+ ++DR +A +
Sbjct: 456 SLGYALMLCPFVVVLGGMFFLATALFFLEDREKAEK 491

Sphingolipid transporter required for migration of myocardial precursors. Transports sphingosine 1-phosphate (S1P), a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. Mediates the export of S1P from cells in the extraembryonic yolk syncytial layer (YSL), thereby regulating myocardial precursor migration.

Xenopus tropicalis (taxid: 8364)

>sp|Q7ZU13|SPNS1_DANRE Protein spinster homolog 1 OS=Danio rerio GN=spns1 PE=2 SV=1

 Score =  134 bits (337), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 65/111 (58%), Positives = 85/111 (76%), Gaps = 2/111 (1%)

Query: 1   MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
           +VG+GEASYSTIAPTII+DLFVK+ R+ ML+ FYFAIP+GSG+GYIVGS   +V   W W
Sbjct: 148 LVGVGEASYSTIAPTIIADLFVKEKRTNMLSIFYFAIPVGSGMGYIVGSKVDTVAKDWHW 207

Query: 61  SLRVTPVLGACAVLLILFFMEDPERG--EAEGRVTEERTSFGEDIRALCKN 109
           +LRVTP LG  AV L++  +++P+RG  EA    T  RTS+  D++ALC+N
Sbjct: 208 ALRVTPGLGLLAVFLLMLVVQEPKRGAIEAHPEHTLHRTSWLADMKALCRN 258

Sphingolipid transporter.

Danio rerio (taxid: 7955)

>sp|Q8IVW8|SPNS2_HUMAN Protein spinster homolog 2 OS=Homo sapiens GN=SPNS2 PE=1 SV=2

 Score =  124 bits (311), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 72/148 (48%), Positives = 96/148 (64%), Gaps = 6/148 (4%)

Query: 1   MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
           +VGIGEASYSTIAPTII DLF K+ R+ ML+ FYFAIP+GSGLGYI GS+     G W W
Sbjct: 202 LVGIGEASYSTIAPTIIGDLFTKNTRTLMLSVFYFAIPLGSGLGYITGSSVKQAAGDWHW 261

Query: 61  SLRVTPVLGACAVLLILFFMEDPERGEAE--GRVTEERTSFGEDIRALCKNHRETWIFLN 118
           +LRV+PVLG     LIL  +   +RG A+  G   + RTS+  D++AL +N   +++F +
Sbjct: 262 ALRVSPVLGMITGTLILILVPATKRGHADQLGDQLKARTSWLRDMKALIRN--RSYVFSS 319

Query: 119 LNWSIVADMT--LYVVLPLRRSTAEAFQ 144
           L  S V+  T  L + +PL    A+  Q
Sbjct: 320 LATSAVSFATGALGMWIPLYLHRAQVVQ 347

Sphingolipid transporter required for migration of myocardial precursors. Transports sphingosine 1-phosphate (S1P), a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. Mediates the export of S1P from cells in the extraembryonic yolk syncytial layer (YSL), thereby regulating myocardial precursor migration.

Homo sapiens (taxid: 9606)

>sp|A2SWM2|SPNS2_DANRE Protein spinster homolog 2 OS=Danio rerio GN=spns2 PE=1 SV=2

 Score =  121 bits (304), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 64/122 (52%), Positives = 89/122 (72%), Gaps = 6/122 (4%)

Query: 1   MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
           +VGIGE+SYS+I+PTII DLF  + R+ ML+ FY AIP+GSGLGYI+GS A    G W W
Sbjct: 155 LVGIGESSYSSISPTIIGDLFTNNKRTVMLSVFYLAIPLGSGLGYILGSIAKDAGGHWYW 214

Query: 61  SLRVTPVLGACAVLLILFFMEDPERGEAE---GRVTEERTSFGEDIRALCKNHRETWIFL 117
           +LRV+P+LG  A  LIL F+ +P+RG A+   GR+ + RTS+  D++AL KN   +++F 
Sbjct: 215 ALRVSPMLGLTAGTLILIFVSEPKRGSADQPGGRL-KTRTSWVCDMKALAKN--RSYVFS 271

Query: 118 NL 119
           +L
Sbjct: 272 SL 273

Sphingolipid transporter required for migration of myocardial precursors. Transports sphingosine 1-phosphate (S1P), a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. Mediates the export of S1P from cells in the extraembryonic yolk syncytial layer (YSL), thereby regulating myocardial precursor migration.

Danio rerio (taxid: 7955)

>sp|Q5XGK0|SPNS1_XENLA Protein spinster homolog 1 OS=Xenopus laevis GN=spns1 PE=2 SV=1

 Score =  119 bits (298), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/130 (53%), Positives = 90/130 (69%), Gaps = 4/130 (3%)

Query: 1   MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
           +VG+GEASYSTIAPTII+DLF+ D R++ML+FFYFA P+G GLGYIVGS   S  G W W
Sbjct: 159 LVGVGEASYSTIAPTIIADLFLADQRTRMLSFFYFATPVGCGLGYIVGSEMTSAAGDWHW 218

Query: 61  SLRVTPVLGACAVLLILFFMEDPERGEAEGRVTE--ERTSFGEDIRALCKNHRETWIFLN 118
           +LRVTP LG  AVLL++F  E+P RG  E +       TS+  D++AL KN   ++I   
Sbjct: 219 ALRVTPGLGLLAVLLLIFVAEEPPRGALERKTDRPLTNTSWSSDMKALLKN--PSFILST 276

Query: 119 LNWSIVADMT 128
             ++ VA +T
Sbjct: 277 FGFTTVAFVT 286

Sphingolipid transporter.

Xenopus laevis (taxid: 8355)

>sp|A8WGF7|SPNS1_XENTR Protein spinster homolog 1 OS=Xenopus tropicalis GN=spns1 PE=2 SV=2

 Score =  117 bits (292), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/130 (52%), Positives = 89/130 (68%), Gaps = 4/130 (3%)

Query: 1   MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
           +VG+GEASYSTIAPTII+DLF+ D RS+ML+FFYFA P+G GLGYI GS   S  G W W
Sbjct: 159 LVGVGEASYSTIAPTIIADLFLADQRSRMLSFFYFATPVGCGLGYIAGSKVTSTAGDWHW 218

Query: 61  SLRVTPVLGACAVLLILFFMEDPERGEAEGRVTE--ERTSFGEDIRALCKNHRETWIFLN 118
           +LRVTP LG  AVLL++F  ++P RG  E +       TS+  D++AL KN   ++I   
Sbjct: 219 ALRVTPGLGLVAVLLLIFVAKEPPRGALERKSDRPLTNTSWFSDVKALLKN--PSFILST 276

Query: 119 LNWSIVADMT 128
             ++ VA +T
Sbjct: 277 FGFTTVAFVT 286

Sphingolipid transporter.

Xenopus tropicalis (taxid: 8364)

>sp|A2CER7|SPNS3_DANRE Protein spinster homolog 3 OS=Danio rerio GN=spns3 PE=2 SV=1

 Score =  115 bits (288), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 60/115 (52%), Positives = 78/115 (67%), Gaps = 1/115 (0%)

Query: 1   MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
           +VG GEASYSTIAPTII DLF    R+ M++FFY  IP+GSGLGYI+G+T     G W W
Sbjct: 148 LVGTGEASYSTIAPTIIGDLFAGSKRTLMISFFYIFIPVGSGLGYIIGATVADATGDWRW 207

Query: 61  SLRVTPVLGACAVLLILFFMEDPERGEAE-GRVTEERTSFGEDIRALCKNHRETW 114
           +LRV+P LG   +LL++F + +P RG ++ G    E TS+ EDI+ L KN    W
Sbjct: 208 ALRVSPALGGLGLLLLVFLIPNPPRGASDNGGANMETTSYTEDIKYLLKNRSFVW 262

Sphingolipid transporter.

Danio rerio (taxid: 7955)

>sp|Q08DX7|SPNS1_BOVIN Protein spinster homolog 1 OS=Bos taurus GN=SPNS1 PE=2 SV=1

 Score =  112 bits (281), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/131 (51%), Positives = 90/131 (68%), Gaps = 5/131 (3%)

Query: 1   MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
           +VG+GEASYSTIAPT+I+DLFV D RS+ML+ FYFAIP+GSGLGYI GS    V G W W
Sbjct: 159 LVGVGEASYSTIAPTLIADLFVADQRSRMLSVFYFAIPVGSGLGYIAGSKVKDVAGDWHW 218

Query: 61  SLRVTPVLGACAVLLILFFMEDPERGEAEGRVTE---ERTSFGEDIRALCKNHRETWIFL 117
           +LRVTP LG  AV+L+   +++P RG  E          TS+  D+RAL +N   ++I  
Sbjct: 219 ALRVTPGLGVLAVVLLFLVVQEPPRGAVERHSDSPPLNPTSWWADLRALARN--PSFILS 276

Query: 118 NLNWSIVADMT 128
           +L ++ VA +T
Sbjct: 277 SLGFTAVAFVT 287

Sphingolipid transporter. May be involved in necrotic or autophagic cell death.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
260799756	376	hypothetical protein BRAFLDRAFT_124438 [	0.943	0.715	0.387	4e-39
291233769	368	PREDICTED: spinster homolog 1-like [Sacc	0.971	0.752	0.364	3e-38
193641068	533	PREDICTED: protein spinster-like [Acyrth	0.273	0.146	0.678	1e-37
242006195	445	conserved hypothetical protein [Pediculu	0.235	0.150	0.694	1e-36
410051087	529	PREDICTED: protein spinster homolog 2 [P	0.603	0.325	0.427	5e-35
158295702	618	AGAP006346-PB [Anopheles gambiae str. PE	0.382	0.176	0.645	4e-34
158295704	618	AGAP006346-PC [Anopheles gambiae str. PE	0.382	0.176	0.645	6e-34
158295700	637	AGAP006346-PA [Anopheles gambiae str. PE	0.382	0.171	0.645	6e-34
91084527	490	PREDICTED: similar to spinster CG8428-PC	0.203	0.118	0.636	6e-34
340712355	518	PREDICTED: LOW QUALITY PROTEIN: protein	0.249	0.137	0.645	6e-34

>gi|260799756|ref|XP_002594850.1| hypothetical protein BRAFLDRAFT_124438 [Branchiostoma floridae] gi|229280087|gb|EEN50861.1| hypothetical protein BRAFLDRAFT_124438 [Branchiostoma floridae]

 Score =  167 bits (424), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 120/310 (38%), Positives = 172/310 (55%), Gaps = 41/310 (13%)

Query: 1   MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
           MVGIGEASYSTIAPTII+D+F KD R+ ML FFYFA P+GSGLG+IVG+    ++GAW W
Sbjct: 51  MVGIGEASYSTIAPTIIADMFTKDRRTTMLTFFYFATPVGSGLGFIVGTNVAKLLGAWQW 110

Query: 61  SLRVTPVLGACAVLLILFFMEDPERGEAEG---RVTEERTSFGEDIRALCKNHRE-TWIF 116
           +LRVTP+LG  AV+LIL F+ +P RGEA+G   R+T   TSF  D++ LC+   +   IF
Sbjct: 111 ALRVTPILGVVAVILILLFVPNPPRGEADGGNARLTN--TSFLTDLKQLCRKQADIALIF 168

Query: 117 LNLN-----------------WSI---VADMTLYVVLPLRRSTAEAFQILISHAFGDAGS 156
             +                  W      AD  +  +  L  +    F +L+S    +   
Sbjct: 169 GGITCAAGVIGTVAGAEWGKRWKKSNPTADPLVCAIGMLGCTPFLYFALLLSRT--NIIV 226

Query: 157 PYLIGLLSEMFRHSLQLGASTLVANAMLPSSLAPSLPFSSSNSTSLPLVSSLDETAHRSD 216
            Y++ L+ E+F   L L   TLVA+ +    L   +P   S + ++ +V         S 
Sbjct: 227 TYVLVLIGEIF---LCLN-WTLVADIV----LYVVIPTRRSTAEAVQIVICHLLGDAGSP 278

Query: 217 EFLAHKSDEFLAHKSDEFL----ALQYALFITSFIEVLGGIFFLLGSLYIVQDRARANRE 272
             +   SD  +A   D ++    +L+YAL I +F+ V+GG FFL  + +IV DRARA+R 
Sbjct: 279 YLIGIVSDA-IASGHDNYIIKYQSLKYALLINTFVCVIGGAFFLGCAFFIVGDRARADRI 337

Query: 273 IAGEDNPASN 282
             GE++  S+
Sbjct: 338 TRGEESEHSD 347

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291233769|ref|XP_002736826.1| PREDICTED: spinster homolog 1-like [Saccoglossus kowalevskii]

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 109/299 (36%), Positives = 169/299 (56%), Gaps = 22/299 (7%)

Query: 1   MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
           +VGIGEASYSTIAPT+I+DLFVK  R++MLA FYFAIP+GSGLGY+VGS      G+W W
Sbjct: 51  LVGIGEASYSTIAPTLIADLFVKGQRTRMLAVFYFAIPVGSGLGYVVGSEVAHAAGSWQW 110

Query: 61  SLRVTPVLGACAVLLILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFLNLN 120
            LR+TPVLG  +++LI+  +++P+RG+++   T   TS+ +D++AL  N    +  + + 
Sbjct: 111 GLRITPVLGVVSLILIVGVLKEPQRGQSDTGHTVRATSYLQDLKALAGNVALVFGGITVV 170

Query: 121 WSIVA-DMTLYVVLPLRRSTAEAFQILISHAFG-DAGSPYLIGLLSEMFRHSLQ------ 172
             I+   +       LR+   +A   +   AFG  A SP+L   L+ +F  S +      
Sbjct: 171 TGIIGVGLGAESARRLRKYNQKADAWVC--AFGLMACSPFL--YLALVFTRSSEAMTWVM 226

Query: 173 --LGASTLVANAMLPSS--LAPSLPFSSSNSTSLPLVSSLDETAHRSDEFLAHKSDEFLA 228
             LG + L  N  + S   L    P   + + +  +++S       +  ++  +  +F+ 
Sbjct: 227 IFLGETCLSLNWAVTSDILLYVVTPTRRATANAFQMLAS-HLLGDATSPYIVGQISDFIR 285

Query: 229 HKSD-----EFLALQYALFITSFIEVLGGIFFLLGSLYIVQDRARANREIAGEDNPASN 282
           H        +F +LQYAL++  FI VLGG  +L  SLYIV D+A+A  +  G D+  S+
Sbjct: 286 HGEQDTAFTQFYSLQYALYLNCFIAVLGGGCYLAVSLYIVYDKAKAEHDTKGSDDSLSH 344

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|193641068|ref|XP_001945783.1| PREDICTED: protein spinster-like [Acyrthosiphon pisum]

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 74/109 (67%), Positives = 91/109 (83%)

Query: 1   MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
           +VG+GEASYSTIAPTIISD+FVKD+RS+MLA FYFAIP+GSGLGYIVGS    ++G+W W
Sbjct: 150 LVGVGEASYSTIAPTIISDMFVKDVRSKMLALFYFAIPVGSGLGYIVGSVTARILGSWHW 209

Query: 61  SLRVTPVLGACAVLLILFFMEDPERGEAEGRVTEERTSFGEDIRALCKN 109
            LRVTP+LG  AVLLI+F ME+PERG++EG      TS+ EDI+ LC+N
Sbjct: 210 GLRVTPLLGMLAVLLIMFVMEEPERGQSEGYSHLTTTSWSEDIQLLCRN 258

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242006195|ref|XP_002423939.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212507209|gb|EEB11201.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 75/108 (69%), Positives = 90/108 (83%)

Query: 3   GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSL 62
           GIGEASYSTIAPTIISDLFVKDLR++MLA FYFAIP+GSGLGYIVGS    + G+W W+L
Sbjct: 39  GIGEASYSTIAPTIISDLFVKDLRAKMLALFYFAIPVGSGLGYIVGSETARMAGSWHWAL 98

Query: 63  RVTPVLGACAVLLILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNH 110
           RVTPV+G  AV+LI FF++DPERGE+EG+     TS+GEDIR + +N 
Sbjct: 99  RVTPVMGLIAVILICFFVKDPERGESEGQSHLAVTSWGEDIRNIIRNR 146

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|410051087|ref|XP_003315348.2| PREDICTED: protein spinster homolog 2 [Pan troglodytes]

 Score =  154 bits (388), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 92/215 (42%), Positives = 116/215 (53%), Gaps = 43/215 (20%)

Query: 1   MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
           +VGIGEASYSTIAPTII DLF K+ R+ ML+ FYFAIP+GSGLGYI GS+     G W W
Sbjct: 257 LVGIGEASYSTIAPTIIGDLFTKNTRTLMLSVFYFAIPLGSGLGYITGSSVKQAAGDWHW 316

Query: 61  SLRVTPVLGACAVLLILFFMEDPERGEAE--GRVTEERTSFGEDIRALCKNHRET----- 113
           +LRV+PVLG     LIL  +   +RG A+  G   + RTS+  D++AL +N         
Sbjct: 317 ALRVSPVLGMITGTLILILVPATKRGHADQLGDQLKARTSWLRDMKALIRNRSYVFSSLA 376

Query: 114 -------------WIFLNLNWSIVADMTL-----------------------YVVLPLRR 137
                        WI L L+ +     T                        YVV+P RR
Sbjct: 377 TSAVSFATGALGMWIPLYLHRAKGVQKTAETCNSPTPSPASTPGEPLTAAGRYVVIPTRR 436

Query: 138 STAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQ 172
           +TA A Q   SH  GDAGSPYLIG +S++ R S +
Sbjct: 437 ATAVALQSFTSHLLGDAGSPYLIGFISDLIRQSTK 471

Source: Pan troglodytes

Species: Pan troglodytes

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|158295702|ref|XP_001688849.1| AGAP006346-PB [Anopheles gambiae str. PEST] gi|157016163|gb|EDO63855.1| AGAP006346-PB [Anopheles gambiae str. PEST]

 Score =  151 bits (381), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 71/110 (64%), Positives = 91/110 (82%), Gaps = 1/110 (0%)

Query: 1   MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
           +VGIGEASYSTIAPTIISDLFV ++RS+MLA FYFAIP+GSGLGYIVG+   S+M +W W
Sbjct: 213 LVGIGEASYSTIAPTIISDLFVGEMRSRMLALFYFAIPVGSGLGYIVGAKMASIMNSWVW 272

Query: 61  SLRVTPVLGACAVLLILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNH 110
           SLRVTPVLGA AV+LI+  + DP+RG++EG    + TS+ ED++A+ +N 
Sbjct: 273 SLRVTPVLGAIAVVLIV-MLRDPQRGQSEGTHHMQTTSYKEDVKAIMRNR 321

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158295704|ref|XP_316366.4| AGAP006346-PC [Anopheles gambiae str. PEST] gi|157016164|gb|EAA44203.4| AGAP006346-PC [Anopheles gambiae str. PEST]

 Score =  150 bits (379), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 71/110 (64%), Positives = 91/110 (82%), Gaps = 1/110 (0%)

Query: 1   MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
           +VGIGEASYSTIAPTIISDLFV ++RS+MLA FYFAIP+GSGLGYIVG+   S+M +W W
Sbjct: 213 LVGIGEASYSTIAPTIISDLFVGEMRSRMLALFYFAIPVGSGLGYIVGAKMASIMNSWVW 272

Query: 61  SLRVTPVLGACAVLLILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNH 110
           SLRVTPVLGA AV+LI+  + DP+RG++EG    + TS+ ED++A+ +N 
Sbjct: 273 SLRVTPVLGAIAVVLIV-MLRDPQRGQSEGTHHMQTTSYKEDVKAIMRNR 321

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158295700|ref|XP_001688848.1| AGAP006346-PA [Anopheles gambiae str. PEST] gi|157016162|gb|EDO63854.1| AGAP006346-PA [Anopheles gambiae str. PEST]

 Score =  150 bits (379), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 71/110 (64%), Positives = 91/110 (82%), Gaps = 1/110 (0%)

Query: 1   MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
           +VGIGEASYSTIAPTIISDLFV ++RS+MLA FYFAIP+GSGLGYIVG+   S+M +W W
Sbjct: 213 LVGIGEASYSTIAPTIISDLFVGEMRSRMLALFYFAIPVGSGLGYIVGAKMASIMNSWVW 272

Query: 61  SLRVTPVLGACAVLLILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNH 110
           SLRVTPVLGA AV+LI+  + DP+RG++EG    + TS+ ED++A+ +N 
Sbjct: 273 SLRVTPVLGAIAVVLIV-MLRDPQRGQSEGTHHMQTTSYKEDVKAIMRNR 321

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91084527|ref|XP_972584.1| PREDICTED: similar to spinster CG8428-PC [Tribolium castaneum]

 Score =  150 bits (379), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 70/110 (63%), Positives = 84/110 (76%)

Query: 1   MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
           +VGIGEASYSTIAPTIISDLFV D+RS+MLA FYFAIP+GSG+GYIVGS      G W W
Sbjct: 137 LVGIGEASYSTIAPTIISDLFVGDVRSKMLALFYFAIPVGSGMGYIVGSETAKAFGKWQW 196

Query: 61  SLRVTPVLGACAVLLILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNH 110
            LRVTP+LG  AV+LI F + DPERG++EG    + T + ED++ L KN 
Sbjct: 197 GLRVTPLLGVVAVVLIFFVLRDPERGQSEGSSHIQTTPWTEDLKDLVKNK 246

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712355|ref|XP_003394727.1| PREDICTED: LOW QUALITY PROTEIN: protein spinster-like [Bombus terrestris]

 Score =  150 bits (379), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 71/110 (64%), Positives = 85/110 (77%)

Query: 1   MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
           +VGIGEASYSTIAPTIISDLFVKD+RS+MLA FYFAIP+GSGLGYI+G  A    GAW W
Sbjct: 146 LVGIGEASYSTIAPTIISDLFVKDVRSKMLALFYFAIPVGSGLGYIIGGEAARATGAWQW 205

Query: 61  SLRVTPVLGACAVLLILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNH 110
            LR+TP+LG  A++L+L  + DP RGE EG V    T++  DI+AL KN 
Sbjct: 206 GLRITPLLGVIAIILLLAVVRDPIRGEREGGVHLSNTAWSNDIKALLKNR 255

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
FB|FBgn0086676	605	spin "spinster" [Drosophila me	0.378	0.178	0.642	1.2e-61
ZFIN|ZDB-GENE-020228-1	506	spns1 "spinster homolog 1 (Dro	0.442	0.249	0.530	2.6e-57
MGI|MGI:1920908	528	Spns1 "spinster homolog 1" [Mu	0.442	0.238	0.519	2e-56
RGD|1305613	528	Spns1 "spinster homolog 1 (Dro	0.442	0.238	0.511	3.4e-56
UNIPROTKB|E2RBY9	561	SPNS1 "Uncharacterized protein	0.442	0.224	0.526	1.1e-55
UNIPROTKB|Q9H2V7	528	SPNS1 "Protein spinster homolo	0.438	0.236	0.515	1.4e-55
UNIPROTKB|F1RFH5	528	SPNS1 "Uncharacterized protein	0.442	0.238	0.519	3.4e-55
UNIPROTKB|H3BMF4	573	SPNS1 "Spinster, isoform CRA_a	0.438	0.218	0.515	4.4e-55
UNIPROTKB|Q08DX7	528	SPNS1 "Protein spinster homolo	0.442	0.238	0.519	2.2e-54
ZFIN|ZDB-GENE-060531-7	500	spns3 "spinster homolog 3 (Dro	0.417	0.238	0.508	1.6e-53

FB|FBgn0086676 spin "spinster" [Drosophila melanogaster (taxid:7227)]

 Score = 352 (129.0 bits), Expect = 1.2e-61, Sum P(2) = 1.2e-61
 Identities = 70/109 (64%), Positives = 85/109 (77%)

Query:     1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
             +VGIGEASYSTIAPTIISDLFV D+RS+MLA FYFAIP+GSGLGYIVGS    +   W W
Sbjct:   212 LVGIGEASYSTIAPTIISDLFVHDMRSKMLALFYFAIPVGSGLGYIVGSKTAHLANDWRW 271

Query:    61 SLRVTPVLGACAVLLILFFMEDPERGEAEGRVTEERTSFGEDIRALCKN 109
             +LRVTP+LG  AV LIL  ++DP RG +EG    E T++ +DI+AL +N
Sbjct:   272 ALRVTPILGIVAVFLILL-IKDPVRGHSEGSHNLEATTYKQDIKALVRN 319

GO:0007422 "peripheral nervous system development" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0045924 "regulation of female receptivity" evidence=IMP

GO:0043067 "regulation of programmed cell death" evidence=IMP

GO:0035193 "larval central nervous system remodeling" evidence=IMP

GO:0045477 "regulation of nurse cell apoptotic process" evidence=IMP

GO:0012501 "programmed cell death" evidence=NAS

GO:0007619 "courtship behavior" evidence=NAS

GO:0008582 "regulation of synaptic growth at neuromuscular junction" evidence=IMP

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006897 "endocytosis" evidence=IMP

GO:0008333 "endosome to lysosome transport" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0048488 "synaptic vesicle endocytosis" evidence=IMP

GO:0045476 "nurse cell apoptotic process" evidence=IMP

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0007040 "lysosome organization" evidence=IMP

GO:0010001 "glial cell differentiation" evidence=IMP

GO:0008347 "glial cell migration" evidence=IMP

GO:0031982 "vesicle" evidence=IDA

GO:0090099 "negative regulation of decapentaplegic signaling pathway" evidence=IGI

ZFIN|ZDB-GENE-020228-1 spns1 "spinster homolog 1 (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 335 (123.0 bits), Expect = 2.6e-57, Sum P(3) = 2.6e-57
 Identities = 69/130 (53%), Positives = 94/130 (72%)

Query:     1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
             +VG+GEASYSTIAPTII+DLFVK+ R+ ML+ FYFAIP+GSG+GYIVGS   +V   W W
Sbjct:   148 LVGVGEASYSTIAPTIIADLFVKEKRTNMLSIFYFAIPVGSGMGYIVGSKVDTVAKDWHW 207

Query:    61 SLRVTPVLGACAVLLILFFMEDPERG--EAEGRVTEERTSFGEDIRALCKNHRETWIFLN 118
             +LRVTP LG  AV L++  +++P+RG  EA    T  RTS+  D++ALC+N   ++I   
Sbjct:   208 ALRVTPGLGLLAVFLLMLVVQEPKRGAIEAHPEHTLHRTSWLADMKALCRN--PSFILST 265

Query:   119 LNWSIVADMT 128
               ++ VA +T
Sbjct:   266 FGFTAVAFVT 275

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

MGI|MGI:1920908 Spns1 "spinster homolog 1" [Mus musculus (taxid:10090)]

 Score = 326 (119.8 bits), Expect = 2.0e-56, Sum P(3) = 2.0e-56
 Identities = 68/131 (51%), Positives = 91/131 (69%)

Query:     1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
             +VG+GEASYSTIAPT+I+DLFV D RS+ML+ FYFAIP+GSGLGYI GS    V G W W
Sbjct:   159 LVGVGEASYSTIAPTLIADLFVADQRSRMLSIFYFAIPVGSGLGYIAGSKVKDVAGDWHW 218

Query:    61 SLRVTPVLGACAVLLILFFMEDPERGEAE---GRVTEERTSFGEDIRALCKNHRETWIFL 117
             +LRVTP LG  AVLL+   +++P RG  E   G      TS+  D++AL +N   +++  
Sbjct:   219 ALRVTPGLGVLAVLLLFLVVQEPPRGAVERHSGSPPLSPTSWWADLKALARN--PSFVLS 276

Query:   118 NLNWSIVADMT 128
             +L ++ VA +T
Sbjct:   277 SLGFTSVAFVT 287

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

RGD|1305613 Spns1 "spinster homolog 1 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 324 (119.1 bits), Expect = 3.4e-56, Sum P(3) = 3.4e-56
 Identities = 67/131 (51%), Positives = 91/131 (69%)

Query:     1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
             +VG+GEASYSTIAPT+I+DLFV D RS+ML+ FYFAIP+GSGLGYI GS    + G W W
Sbjct:   159 LVGVGEASYSTIAPTLIADLFVADQRSRMLSIFYFAIPVGSGLGYIAGSKVKDLAGDWHW 218

Query:    61 SLRVTPVLGACAVLLILFFMEDPERGEAE---GRVTEERTSFGEDIRALCKNHRETWIFL 117
             +LRVTP LG  AVLL+   +++P RG  E   G      TS+  D++AL +N   +++  
Sbjct:   219 ALRVTPGLGVLAVLLLFLVVQEPPRGAVERHSGSPPLSPTSWWADLKALARN--PSFVLS 276

Query:   118 NLNWSIVADMT 128
             +L ++ VA +T
Sbjct:   277 SLGFTAVAFVT 287

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|E2RBY9 SPNS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 324 (119.1 bits), Expect = 1.1e-55, Sum P(3) = 1.1e-55
 Identities = 69/131 (52%), Positives = 89/131 (67%)

Query:     1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
             +VG+GEASYSTIAPT+I+DLFV D RS+ML+ FYFAIP+GSGLGYI GS    V G W W
Sbjct:   192 LVGVGEASYSTIAPTLIADLFVADQRSRMLSVFYFAIPVGSGLGYIAGSKVKDVAGDWHW 251

Query:    61 SLRVTPVLGACAVLLILFFMEDPERGEAEGRVTE---ERTSFGEDIRALCKNHRETWIFL 117
             +LRVTP LG  AVLL+   + +P RG  E          TS+  D+RAL +N   ++I  
Sbjct:   252 ALRVTPGLGVVAVLLLFLVVREPPRGAVERHSDSPPLNPTSWWADLRALARN--PSFILS 309

Query:   118 NLNWSIVADMT 128
             +L ++ VA +T
Sbjct:   310 SLGFTAVAFVT 320

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9H2V7 SPNS1 "Protein spinster homolog 1" [Homo sapiens (taxid:9606)]

 Score = 320 (117.7 bits), Expect = 1.4e-55, Sum P(3) = 1.4e-55
 Identities = 68/132 (51%), Positives = 92/132 (69%)

Query:     1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
             +VG+GEASYSTIAPT+I+DLFV D RS+ML+ FYFAIP+GSGLGYI GS    + G W W
Sbjct:   159 LVGVGEASYSTIAPTLIADLFVADQRSRMLSIFYFAIPVGSGLGYIAGSKVKDMAGDWHW 218

Query:    61 SLRVTPVLGACAVLLILFFMEDPERGEAEGRVTE----ERTSFGEDIRALCKNHRETWIF 116
             +LRVTP LG  AVLL+   + +P RG  E R ++      TS+  D+RAL +N   +++ 
Sbjct:   219 ALRVTPGLGVVAVLLLFLVVREPPRGAVE-RHSDLPPLNPTSWWADLRALARN--PSFVL 275

Query:   117 LNLNWSIVADMT 128
              +L ++ VA +T
Sbjct:   276 SSLGFTAVAFVT 287

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1RFH5 SPNS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 321 (118.1 bits), Expect = 3.4e-55, Sum P(3) = 3.4e-55
 Identities = 68/131 (51%), Positives = 89/131 (67%)

Query:     1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
             +VG+GEASYSTIAPT+I+DLFV D RS+ML+ FYFAIP+GSGLGYI GS    V G W W
Sbjct:   159 LVGVGEASYSTIAPTLIADLFVADQRSRMLSVFYFAIPVGSGLGYIAGSKVKDVAGDWHW 218

Query:    61 SLRVTPVLGACAVLLILFFMEDPERGEAEGRVTE---ERTSFGEDIRALCKNHRETWIFL 117
             +LRVTP LG  AV+L+   + +P RG  E          TS+  D+RAL +N   ++I  
Sbjct:   219 ALRVTPGLGVLAVVLLFLVVREPPRGAVERHSDSPPLNPTSWWADLRALARN--PSFILS 276

Query:   118 NLNWSIVADMT 128
             +L ++ VA +T
Sbjct:   277 SLGFTAVAFVT 287

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|H3BMF4 SPNS1 "Spinster, isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 320 (117.7 bits), Expect = 4.4e-55, Sum P(3) = 4.4e-55
 Identities = 68/132 (51%), Positives = 92/132 (69%)

Query:     1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
             +VG+GEASYSTIAPT+I+DLFV D RS+ML+ FYFAIP+GSGLGYI GS    + G W W
Sbjct:   204 LVGVGEASYSTIAPTLIADLFVADQRSRMLSIFYFAIPVGSGLGYIAGSKVKDMAGDWHW 263

Query:    61 SLRVTPVLGACAVLLILFFMEDPERGEAEGRVTE----ERTSFGEDIRALCKNHRETWIF 116
             +LRVTP LG  AVLL+   + +P RG  E R ++      TS+  D+RAL +N   +++ 
Sbjct:   264 ALRVTPGLGVVAVLLLFLVVREPPRGAVE-RHSDLPPLNPTSWWADLRALARN--PSFVL 320

Query:   117 LNLNWSIVADMT 128
              +L ++ VA +T
Sbjct:   321 SSLGFTAVAFVT 332

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|Q08DX7 SPNS1 "Protein spinster homolog 1" [Bos taurus (taxid:9913)]

 Score = 323 (118.8 bits), Expect = 2.2e-54, Sum P(3) = 2.2e-54
 Identities = 68/131 (51%), Positives = 90/131 (68%)

Query:     1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
             +VG+GEASYSTIAPT+I+DLFV D RS+ML+ FYFAIP+GSGLGYI GS    V G W W
Sbjct:   159 LVGVGEASYSTIAPTLIADLFVADQRSRMLSVFYFAIPVGSGLGYIAGSKVKDVAGDWHW 218

Query:    61 SLRVTPVLGACAVLLILFFMEDPERGEAEGRVTE---ERTSFGEDIRALCKNHRETWIFL 117
             +LRVTP LG  AV+L+   +++P RG  E          TS+  D+RAL +N   ++I  
Sbjct:   219 ALRVTPGLGVLAVVLLFLVVQEPPRGAVERHSDSPPLNPTSWWADLRALARN--PSFILS 276

Query:   118 NLNWSIVADMT 128
             +L ++ VA +T
Sbjct:   277 SLGFTAVAFVT 287

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

ZFIN|ZDB-GENE-060531-7 spns3 "spinster homolog 3 (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 315 (115.9 bits), Expect = 1.6e-53, Sum P(3) = 1.6e-53
 Identities = 61/120 (50%), Positives = 80/120 (66%)

Query:     1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
             +VG GEASYSTIAPTII DLF    R+ M++FFY  IP+GSGLGYI+G+T     G W W
Sbjct:   148 LVGTGEASYSTIAPTIIGDLFAGSKRTLMISFFYIFIPVGSGLGYIIGATVADATGDWRW 207

Query:    61 SLRVTPVLGACAVLLILFFMEDPERGEAE-GRVTEERTSFGEDIRALCKNHRETWIFLNL 119
             +LRV+P LG   +LL++F + +P RG ++ G    E TS+ EDI+ L KN    W  L +
Sbjct:   208 ALRVSPALGGLGLLLLVFLIPNPPRGASDNGGANMETTSYTEDIKYLLKNRSFVWSSLGV 267

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	285
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	3e-07
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	4e-07

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 39/202 (19%), Positives = 68/202 (33%), Gaps = 8/202 (3%)

Query: 1   MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
           + G+G  +    A  +I+D F  + R + L        +G+ LG ++G    + +  W  
Sbjct: 94  LQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGG-LLASLFGWRA 152

Query: 61  SLRV-TPVLGACAVLLILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFLNL 119
           +  +   +    AVL  L     P   +      E         + L ++     +   L
Sbjct: 153 AFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALL 212

Query: 120 NWSIVADMTLYVVLPLRR-----STAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLG 174
            +       L   LPL +     S   A  +L       A    L+G LS+      +L 
Sbjct: 213 LFGFAF-FALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLL 271

Query: 175 ASTLVANAMLPSSLAPSLPFSS 196
            + L+           SL  SS
Sbjct: 272 LALLLLILAALGLALLSLTESS 293

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 1/80 (1%)

Query: 1   MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW 60
           ++G+G  +    A  +I++ F    R + L  F     +G+ LG ++G    +    W W
Sbjct: 96  LLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGG-LLAESLGWRW 154

Query: 61  SLRVTPVLGACAVLLILFFM 80
              +  +LG    LL+LF +
Sbjct: 155 LFLILAILGLLLALLLLFLL 174

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	285
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.91
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.83
PRK11663	434	regulatory protein UhpC; Provisional	99.83
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.83
KOG1330|consensus	493		99.82
TIGR00893	399	2A0114 d-galactonate transporter.	99.81
KOG2532|consensus	466		99.8
PRK03545	390	putative arabinose transporter; Provisional	99.8
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.79
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.78
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.78
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.77
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.76
PRK09952	438	shikimate transporter; Provisional	99.76
PRK11010	491	ampG muropeptide transporter; Validated	99.76
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.76
PRK10642	490	proline/glycine betaine transporter; Provisional	99.75
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.75
PRK10489	417	enterobactin exporter EntS; Provisional	99.75
PRK12307	426	putative sialic acid transporter; Provisional	99.74
PLN00028	476	nitrate transmembrane transporter; Provisional	99.74
PRK15075	434	citrate-proton symporter; Provisional	99.73
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.73
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.72
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.72
PRK03893	496	putative sialic acid transporter; Provisional	99.71
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.71
PRK03699	394	putative transporter; Provisional	99.7
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.7
PRK11902	402	ampG muropeptide transporter; Reviewed	99.69
PRK09705	393	cynX putative cyanate transporter; Provisional	99.69
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.69
TIGR00900	365	2A0121 H+ Antiporter protein.	99.69
KOG2533|consensus	495		99.68
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.68
PRK09874	408	drug efflux system protein MdtG; Provisional	99.68
PRK10091	382	MFS transport protein AraJ; Provisional	99.68
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.67
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.67
PRK15011	393	sugar efflux transporter B; Provisional	99.66
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.66
PRK05122	399	major facilitator superfamily transporter; Provisi	99.65
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.65
PRK12382	392	putative transporter; Provisional	99.65
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.64
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.64
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.63
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.63
TIGR00891	405	2A0112 putative sialic acid transporter.	99.62
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.61
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.6
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.6
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.6
PRK10504	471	putative transporter; Provisional	99.59
PRK09528	420	lacY galactoside permease; Reviewed	99.58
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.58
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.56
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.55
PRK10054	395	putative transporter; Provisional	99.55
KOG3764|consensus	464		99.55
PRK03633	381	putative MFS family transporter protein; Provision	99.55
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.54
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.53
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.53
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.53
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.53
PRK10133	438	L-fucose transporter; Provisional	99.53
TIGR00898	505	2A0119 cation transport protein.	99.52
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.52
TIGR00895	398	2A0115 benzoate transport.	99.51
TIGR00805	633	oat sodium-independent organic anion transporter.	99.51
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.5
PRK11043	401	putative transporter; Provisional	99.48
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.48
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.47
TIGR00901	356	2A0125 AmpG-related permease.	99.47
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.47
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.45
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.44
KOG2504|consensus	509		99.42
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.42
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.4
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.37
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.36
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.35
PRK09669	444	putative symporter YagG; Provisional	99.28
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.27
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.26
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.25
KOG0252|consensus	538		99.19
PRK10429	473	melibiose:sodium symporter; Provisional	99.19
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.15
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.13
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.12
KOG3626|consensus	735		99.1
KOG0569|consensus	485		99.03
PF13347	428	MFS_2: MFS/sugar transport protein	99.02
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.02
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.01
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.96
KOG2563|consensus	480		98.95
PRK11462	460	putative transporter; Provisional	98.92
PRK09848	448	glucuronide transporter; Provisional	98.85
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.76
KOG0253|consensus	528		98.76
COG2211	467	MelB Na+/melibiose symporter and related transport	98.75
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.7
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.59
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.59
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.56
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.55
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.54
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.37
KOG4686|consensus	459		98.37
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.34
PRK05122	399	major facilitator superfamily transporter; Provisi	98.31
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.28
KOG2615|consensus	451		98.26
PRK10489	417	enterobactin exporter EntS; Provisional	98.21
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.16
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.15
PRK12382	392	putative transporter; Provisional	98.12
PRK10054	395	putative transporter; Provisional	98.09
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.08
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.08
PRK09874	408	drug efflux system protein MdtG; Provisional	98.06
PTZ00207	591	hypothetical protein; Provisional	98.03
PRK10213	394	nepI ribonucleoside transporter; Reviewed	97.95
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.94
TIGR00891	405	2A0112 putative sialic acid transporter.	97.94
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	97.93
TIGR00900	365	2A0121 H+ Antiporter protein.	97.92
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.9
TIGR00892	455	2A0113 monocarboxylate transporter 1.	97.89
TIGR00895	398	2A0115 benzoate transport.	97.89
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	97.88
PRK09705	393	cynX putative cyanate transporter; Provisional	97.88
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	97.87
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	97.87
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	97.87
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	97.86
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.85
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.84
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	97.84
KOG0254|consensus	513		97.84
KOG0255|consensus	521		97.82
PRK09528	420	lacY galactoside permease; Reviewed	97.82
KOG2325|consensus	488		97.81
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.78
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	97.77
PRK10642	490	proline/glycine betaine transporter; Provisional	97.77
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	97.76
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.75
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	97.74
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	97.74
PLN00028	476	nitrate transmembrane transporter; Provisional	97.72
PRK03633	381	putative MFS family transporter protein; Provision	97.7
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	97.68
PRK11663	434	regulatory protein UhpC; Provisional	97.68
PRK03545	390	putative arabinose transporter; Provisional	97.67
PRK10091	382	MFS transport protein AraJ; Provisional	97.67
PRK11043	401	putative transporter; Provisional	97.66
TIGR00893	399	2A0114 d-galactonate transporter.	97.65
PRK11652	394	emrD multidrug resistance protein D; Provisional	97.62
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.6
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.58
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.58
PRK10473	392	multidrug efflux system protein MdtL; Provisional	97.57
PRK10077	479	xylE D-xylose transporter XylE; Provisional	97.56
PRK14995	495	methyl viologen resistance protein SmvA; Provision	97.56
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	97.55
KOG1330|consensus	493		97.54
PRK15011	393	sugar efflux transporter B; Provisional	97.52
PRK11010	491	ampG muropeptide transporter; Validated	97.49
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	97.48
KOG2816|consensus	463		97.47
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	97.46
KOG2615|consensus	451		97.46
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.45
PRK11646	400	multidrug resistance protein MdtH; Provisional	97.43
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	97.42
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.42
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	97.41
PRK03893	496	putative sialic acid transporter; Provisional	97.4
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	97.22
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	97.18
PRK09952	438	shikimate transporter; Provisional	97.18
TIGR00805	633	oat sodium-independent organic anion transporter.	97.14
TIGR00898	505	2A0119 cation transport protein.	97.13
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.12
PRK12307	426	putative sialic acid transporter; Provisional	97.09
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	97.08
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	97.04
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.02
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	96.99
TIGR00897	402	2A0118 polyol permease family. This family of prot	96.98
PRK10504	471	putative transporter; Provisional	96.9
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	96.9
TIGR00901	356	2A0125 AmpG-related permease.	96.87
TIGR00788	468	fbt folate/biopterin transporter. The only functio	96.87
COG2270	438	Permeases of the major facilitator superfamily [Ge	96.86
KOG0255|consensus	521		96.8
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	96.8
KOG3762|consensus	618		96.79
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	96.68
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	96.59
KOG2532|consensus	466		96.53
COG3202	509	ATP/ADP translocase [Energy production and convers	96.48
PRK03699	394	putative transporter; Provisional	96.44
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	96.44
KOG4686|consensus	459		96.42
PRK15075	434	citrate-proton symporter; Provisional	96.36
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	96.35
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	96.25
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	96.25
PRK11902	402	ampG muropeptide transporter; Reviewed	96.14
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	96.11
KOG3762|consensus	618		96.07
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	96.0
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	95.83
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	95.82
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	95.72
KOG2504|consensus	509		95.71
PRK10406	432	alpha-ketoglutarate transporter; Provisional	95.7
KOG3098|consensus	461		95.67
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	95.59
KOG0569|consensus	485		95.42
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	95.18
KOG0254|consensus	513		95.17
PRK11195	393	lysophospholipid transporter LplT; Provisional	95.17
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	94.91
TIGR00896	355	CynX cyanate transporter. This family of proteins	94.91
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	94.47
PRK09848	448	glucuronide transporter; Provisional	94.35
PRK09669	444	putative symporter YagG; Provisional	94.35
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	94.22
KOG3764|consensus	464		94.0
COG0477	338	ProP Permeases of the major facilitator superfamil	93.73
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	93.31
KOG2533|consensus	495		92.69
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	92.21
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	91.63
KOG2816|consensus	463		91.62
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	91.53
KOG0252|consensus	538		90.89
PRK10429	473	melibiose:sodium symporter; Provisional	89.93
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	89.88
PRK10133	438	L-fucose transporter; Provisional	89.3
PF12832	77	MFS_1_like: MFS_1 like family	89.18
KOG2325|consensus	488		89.17
PTZ00207	591	hypothetical protein; Provisional	88.3
KOG0253|consensus	528		88.12
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	86.87
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	86.57
KOG3810|consensus	433		86.16
PF13347	428	MFS_2: MFS/sugar transport protein	86.14
COG2211	467	MelB Na+/melibiose symporter and related transport	83.9
PRK11462	460	putative transporter; Provisional	80.56

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.91  E-value=6.9e-25  Score=183.67  Aligned_cols=254  Identities=14%  Similarity=0.099  Sum_probs=188.8

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHH--HHhhhccCCchHHHHHhhHHHHHHHHHHHH
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVG--STAFSVMGAWPWSLRVTPVLGACAVLLILF   78 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~--~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~   78 (285)
                      +.|..+|..+|++...+++|+|++|||+..++++++.|+|..+.+++.  +++..+++ ||..|++.++++++..++.++
T Consensus       126 lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~-w~~~f~~pgiiaiival~~~~  204 (448)
T COG2271         126 LNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGG-WRAAFYFPGIIAIIVALILLF  204 (448)
T ss_pred             HHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHH
Confidence            468889999999999999999999999999999999999999999999  88988875 999999999999999999999


Q ss_pred             hccCCcCccc------------cCcccccc---ccHHH-HHHHHhhhhhhHHH-----------HHHHHHHHHHHHHHHh
Q psy5252          79 FMEDPERGEA------------EGRVTEER---TSFGE-DIRALCKNHRETWI-----------FLNLNWSIVADMTLYV  131 (285)
Q Consensus        79 ~~~~~~~~~~------------~~~~~~~~---~~~~~-~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~  131 (285)
                      ..+|+|++..            +..+++++   .+.++ -++.+++||..|++           +....|.|.|.....+
T Consensus       205 ~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~  284 (448)
T COG2271         205 LLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKG  284 (448)
T ss_pred             HhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcC
Confidence            9998775321            11011111   22233 35778899988872           2356789999888888


Q ss_pred             cCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccc--eeee------eec-ccccc---cccccccccccc
Q psy5252         132 VLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGA--STLV------ANA-MLPSS---LAPSLPFSSSNS  199 (285)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~--~~~~------~~~-~~~~~---~~~~~~~~~~~~  199 (285)
                      .+....+...++.-     .+++.|++++|++|||+.+.++...  .+.+      +.+ ..+..   +....++..+..
T Consensus       285 ~s~~~a~~a~~lfE-----~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~  359 (448)
T COG2271         285 FSLVKANWAISLFE-----VAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFL  359 (448)
T ss_pred             CCHHHHHHHHHHHH-----HHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHH
Confidence            88888888877776     7888899999999999875543333  2211      111 11111   223333334456


Q ss_pred             CCcch---hhhhccccCCcch-----------hh-hccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy5252         200 TSLPL---VSSLDETAHRSDE-----------FL-AHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLLGSL  260 (285)
Q Consensus       200 ~~~~~---~~~~~~~~p~~~r-----------~l-~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (285)
                      ..+|+   .....|.+|++..           ++ |...+....|++.|.+||...|++..+..+++.+++..+..
T Consensus       360 IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~  435 (448)
T COG2271         360 IYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN  435 (448)
T ss_pred             HhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence            66776   3445699999886           14 66788888889999999999999888888888777666543

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.83  E-value=4.8e-21  Score=170.73  Aligned_cols=253  Identities=11%  Similarity=-0.014  Sum_probs=161.0

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhcc--CCchHHHHHhhHHHHHHHHHHHH
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVM--GAWPWSLRVTPVLGACAVLLILF   78 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~--g~wr~~f~i~~~~~~~~~~l~~~   78 (285)
                      ++|++++...|...++++||+|++||++++|++..+.++|.++++++..++.+..  ++||..|.+.+++.++..++.++
T Consensus       131 l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~  210 (467)
T PRK09556        131 LSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLR  210 (467)
T ss_pred             HHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHH
Confidence            3688899999999999999999999999999999999999999999988777653  24999999988888777766666


Q ss_pred             hccCCcCccc----c-----C-cccc-----ccccHHHHH-HHHhhhhhhHHHH-----------HHHHHHHHHHHHHHh
Q psy5252          79 FMEDPERGEA----E-----G-RVTE-----ERTSFGEDI-RALCKNHRETWIF-----------LNLNWSIVADMTLYV  131 (285)
Q Consensus        79 ~~~~~~~~~~----~-----~-~~~~-----~~~~~~~~~-~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~  131 (285)
                      +.++.+++..    +     . ..++     ++.+..+.+ +..+++|.+|...           ....|.|.+....++
T Consensus       211 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g  290 (467)
T PRK09556        211 YGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELG  290 (467)
T ss_pred             hCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            6665443210    0     0 0000     011112222 3367777776521           233466666555556


Q ss_pred             cCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhccccee--eeee---cc--cccc--ccccccccccccCCc
Q psy5252         132 VLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGAST--LVAN---AM--LPSS--LAPSLPFSSSNSTSL  202 (285)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~--~~~~---~~--~~~~--~~~~~~~~~~~~~~~  202 (285)
                      .++.+.+......     .++.+++.++.|+++||+++|+......  ....   ..  ....  ......+..+....+
T Consensus       291 ~s~~~a~~~~~~~-----~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  365 (467)
T PRK09556        291 FSKEDAINTFTLF-----EIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFG  365 (467)
T ss_pred             CCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhh
Confidence            5554444333322     2556778889999999999886543211  0111   11  1111  111111111112223


Q ss_pred             ch---hhhhccccCCcchh-----------h-hccccchhhhhhhh------------hhhhHHHHHHHHHHHHHHHHHH
Q psy5252         203 PL---VSSLDETAHRSDEF-----------L-AHKSDEFLAHKSDE------------FLALQYALFITSFIEVLGGIFF  255 (285)
Q Consensus       203 ~~---~~~~~~~~p~~~r~-----------l-~~~~~p~~~G~~~~------------~~~~~~~~~~~~~~~~~~~~~~  255 (285)
                      +.   .....|.+|++.|.           + +.+++|.+.|.+.|            ..+|+..|.+..++.+++.+..
T Consensus       366 ~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~  445 (467)
T PRK09556        366 PQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLM  445 (467)
T ss_pred             HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHH
Confidence            32   34566999998871           2 44688999999999            6789999988877777776665


Q ss_pred             HHH
Q psy5252         256 LLG  258 (285)
Q Consensus       256 ~~~  258 (285)
                      +..
T Consensus       446 ~~~  448 (467)
T PRK09556        446 AIV  448 (467)
T ss_pred             HHH
Confidence            543

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.83  E-value=1.3e-20  Score=166.41  Aligned_cols=249  Identities=12%  Similarity=0.130  Sum_probs=155.5

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      .|++.+..++...++++|++|+++|++++++++.+.++|..+++.+.+.+.+.++ ||+.|++.+++.++..++..+.++
T Consensus       121 ~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-w~~~f~~~~i~~~~~~~~~~~~~~  199 (434)
T PRK11663        121 NAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYG-WRYGMMIAGIIAIVVGLFLCWRLR  199 (434)
T ss_pred             HHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHHHHHHHcC
Confidence            4777888889999999999999999999999999999999999999999999886 999999988877766656666677


Q ss_pred             CCcCccc--c-----Ccc----cc---ccccHHHHHH-HHhhhhhhHHHH-----------HHHHHHHHHHHHHHhcCCC
Q psy5252          82 DPERGEA--E-----GRV----TE---ERTSFGEDIR-ALCKNHRETWIF-----------LNLNWSIVADMTLYVVLPL  135 (285)
Q Consensus        82 ~~~~~~~--~-----~~~----~~---~~~~~~~~~~-~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~  135 (285)
                      |++++..  +     ++.    ++   ++.+.++.++ ..++++.++...           ....|.|.+....++.++.
T Consensus       200 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~  279 (434)
T PRK11663        200 DKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLV  279 (434)
T ss_pred             CCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHH
Confidence            6543210  0     000    00   0112222222 255666665421           1223445443333455554


Q ss_pred             CcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhh--cccce-e--ee---eec-ccc--cc-ccccccccccccCCcc
Q psy5252         136 RRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSL--QLGAS-T--LV---ANA-MLP--SS-LAPSLPFSSSNSTSLP  203 (285)
Q Consensus       136 ~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~--~~~~~-~--~~---~~~-~~~--~~-~~~~~~~~~~~~~~~~  203 (285)
                      +.+...+..     .++..+|.++.|+++||+.+++  ..... .  ..   ..+ ..+  .. ......+..+....++
T Consensus       280 ~a~~~~~~~-----~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  354 (434)
T PRK11663        280 TANSAVSMF-----ELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGP  354 (434)
T ss_pred             HHHHHHHHH-----HHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhH
Confidence            444333322     2566778889999999994332  21111 0  00   000 111  11 1111111111112222


Q ss_pred             ---hhhhhccccCCcch-----------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252         204 ---LVSSLDETAHRSDE-----------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL  256 (285)
Q Consensus       204 ---~~~~~~~~~p~~~r-----------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (285)
                         ....+.|..|++.|           .+|.+++|.+.|++.|+.||+..|+..+++.+++++...
T Consensus       355 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~  421 (434)
T PRK11663        355 QMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLL  421 (434)
T ss_pred             HHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence               23456788988887           266789999999999999999999888777777665443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.83  E-value=8.7e-21  Score=160.68  Aligned_cols=243  Identities=17%  Similarity=0.139  Sum_probs=157.5

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      .|+..|.+++...++.++.+|++||++++++...+..++.++|.+++.++.+.+| ||..|++.+.++++..+..+..+|
T Consensus       111 ~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G-WR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         111 AGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG-WRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHhCC
Confidence            5788899999999999999999999999999999999999999999999999997 999999999999999988888888


Q ss_pred             CCcCccccCccccccccHHHHHHHHhhhhhhHHHHH-----------HHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhh
Q psy5252          82 DPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL-----------NLNWSIVADMTLYVVLPLRRSTAEAFQILISHA  150 (285)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (285)
                       +++.+ ++.    +.+.++ ....+|+|..+..+.           ...+.-.+.....+++.+..+     ...+...
T Consensus       190 -~~~~~-~~~----~~~~~~-~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs-----~~Ll~~G  257 (394)
T COG2814         190 -PSEIS-GSL----PGPLRT-LLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVS-----LVLLAFG  257 (394)
T ss_pred             -CccCC-CCC----CcchhH-HHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHH-----HHHHHHH
Confidence             22111 111    111222 334667777765221           111111122222233322222     2333445


Q ss_pred             ccccchhhhhHHHhHHhhhhhcccceee--e---eecc-cccc--ccccccccccccCCcchhhhhccccC--Ccch---
Q psy5252         151 FGDAGSPYLIGLLSEMFRHSLQLGASTL--V---ANAM-LPSS--LAPSLPFSSSNSTSLPLVSSLDETAH--RSDE---  217 (285)
Q Consensus       151 ~g~~~g~~~~G~l~d~~~~~~~~~~~~~--~---~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~r---  217 (285)
                      ++.++|..++|+++|| +.++.......  +   +.+. ....  ......+..+.......+....+..+  |+.+   
T Consensus       258 v~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a  336 (394)
T COG2814         258 IAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLA  336 (394)
T ss_pred             HHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCCchHHH
Confidence            7788899999999999 55544433211  1   1111 1111  11111111223333333444443333  3333   


Q ss_pred             --------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy5252         218 --------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLLG  258 (285)
Q Consensus       218 --------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (285)
                              ++|++.|..++|.+.|+.|+....+..++..+++.++.+..
T Consensus       337 ~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~  385 (394)
T COG2814         337 GSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLS  385 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Confidence                    27889999999999999999999988887777777665543

>KOG1330|consensus

Probab=99.82  E-value=1.5e-21  Score=165.33  Aligned_cols=234  Identities=29%  Similarity=0.390  Sum_probs=162.2

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      +.|+|++.+.|.++++|+|.||.++|++++++++.+.++|..+|.+.+..+.++.+.|||.|+..++++++..++.+++.
T Consensus       130 ~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~  209 (493)
T KOG1330|consen  130 FVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFV  209 (493)
T ss_pred             HhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhc
Confidence            47999999999999999999999999999999999999999999999999999876699999999999999999999999


Q ss_pred             cCCcCccccCccc-----cccccHHHHHHHHhhhhhhHH-----------HHHHHHHHHHHHHHHHhcC--CCCcchhHH
Q psy5252          81 EDPERGEAEGRVT-----EERTSFGEDIRALCKNHRETW-----------IFLNLNWSIVADMTLYVVL--PLRRSTAEA  142 (285)
Q Consensus        81 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  142 (285)
                      +||++.+.++...     .+..+..++++.+.+++.+..           ...+.-|.|.+....+.+.  .+..+...+
T Consensus       210 ~eP~rga~~~~~~~~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg  289 (493)
T KOG1330|consen  210 REPERGARDEVDGENKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFG  289 (493)
T ss_pred             cCcccccccccccCCcCCCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhh
Confidence            9998754333221     234456777887777666532           2234456676555444443  344455555


Q ss_pred             HHHHHhhhccccchhhhhHHHhHHhhhhhcccc-------eeee-----eec--ccc-----ccc-ccccc---cccccc
Q psy5252         143 FQILISHAFGDAGSPYLIGLLSEMFRHSLQLGA-------STLV-----ANA--MLP-----SSL-APSLP---FSSSNS  199 (285)
Q Consensus       143 ~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~-------~~~~-----~~~--~~~-----~~~-~~~~~---~~~~~~  199 (285)
                      ...    ..++.+|..++|.++||+-+..+...       .+..     +.+  ..+     ..+ .+.++   ....+.
T Consensus       290 ~vt----~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~  365 (493)
T KOG1330|consen  290 GVT----CAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWF  365 (493)
T ss_pred             hHH----HhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc
Confidence            444    35556667788999999766322211       0100     001  011     111 11111   111244


Q ss_pred             CCcchhhhhccccCCcchh------------hhccccchhhhhhhhhh-hhH
Q psy5252         200 TSLPLVSSLDETAHRSDEF------------LAHKSDEFLAHKSDEFL-ALQ  238 (285)
Q Consensus       200 ~~~~~~~~~~~~~p~~~r~------------l~~~~~p~~~G~~~~~~-~~~  238 (285)
                      ..+++..+..|.+||+.|.            +|.+-+|++.|.+.|+. |++
T Consensus       366 ~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~  417 (493)
T KOG1330|consen  366 NWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK  417 (493)
T ss_pred             ccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence            5566677788999999991            56688999999999864 344

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.81  E-value=1.7e-19  Score=156.55  Aligned_cols=250  Identities=17%  Similarity=0.108  Sum_probs=162.1

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      ++|++.+...+...++++|++|+|+|++++++.+...++|..+++.+++.+.+..+ ||+.|++.+++.++..++..+..
T Consensus        91 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  169 (399)
T TIGR00893        91 LLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFS-WQWAFIIEGVLGIIWGVLWLKFI  169 (399)
T ss_pred             HHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHhhhee
Confidence            36888889999999999999999999999999999999999999999999998886 99999999888877776666666


Q ss_pred             cCCcCccccCccc----------------cccccHHHHHHHHhhhhhhHHHH-----------HHHHHHHHHHHHHHhcC
Q psy5252          81 EDPERGEAEGRVT----------------EERTSFGEDIRALCKNHRETWIF-----------LNLNWSIVADMTLYVVL  133 (285)
Q Consensus        81 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~  133 (285)
                      +|+++++...+++                +++++..+..+..+++|.++...           ....|.+.+.....+.+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (399)
T TIGR00893       170 PDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLS  249 (399)
T ss_pred             cCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccc
Confidence            6654322110000                00111223355667777765421           12223333333333444


Q ss_pred             CCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccce---e-----eee---ecccc--cc--ccc-c-ccccc
Q psy5252         134 PLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGAS---T-----LVA---NAMLP--SS--LAP-S-LPFSS  196 (285)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~---~-----~~~---~~~~~--~~--~~~-~-~~~~~  196 (285)
                      +.+.+......     .++.+++.++.|+++||+++|+.....   .     +..   .+...  ..  ... . .....
T Consensus       250 ~~~~~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (399)
T TIGR00893       250 ILEAGFMASLP-----GIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFF  324 (399)
T ss_pred             HHHhhHHHHHH-----HHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHh
Confidence            43333333322     255566788999999999998621110   0     000   01111  11  111 1 11111


Q ss_pred             cccCCcchhhhhccccCCcchh-----------hhccccchhhhhhhhhhh-hHHHHHHHHHHHHHHHHHHH
Q psy5252         197 SNSTSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLA-LQYALFITSFIEVLGGIFFL  256 (285)
Q Consensus       197 ~~~~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~  256 (285)
                      ..+......+.++|.+|+++|.           ++..++|.+.|.+.|..| ++..+...+++.+++.+..+
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       325 GLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             chhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence            2234555678899999999882           667899999999999988 99988887777777665544

>KOG2532|consensus

Probab=99.80  E-value=2.5e-20  Score=163.71  Aligned_cols=253  Identities=16%  Similarity=0.156  Sum_probs=179.0

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhc-cCCchHHHHHhhHHHHHHHHHHHHh
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSV-MGAWPWSLRVTPVLGACAVLLILFF   79 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~-~g~wr~~f~i~~~~~~~~~~l~~~~   79 (285)
                      +||+++|..+|+...+.++|.|++||++..++..++..+|.+++.+++|.+.+. +| |+++|++.++.+++..++++.+
T Consensus       137 lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~G-W~sifY~~g~~g~i~~~~w~~~  215 (466)
T KOG2532|consen  137 LQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLG-WPSIFYVFGIVGLIWFILWFLF  215 (466)
T ss_pred             HhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC-CchHHHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999999999999999999999999998 75 9999999999999999999888


Q ss_pred             ccCCcCccccCcc----------cc--ccccHHHHHHHHhhhhhhHH-----------HHHHHHHHHHHHHHHHhcCCCC
Q psy5252          80 MEDPERGEAEGRV----------TE--ERTSFGEDIRALCKNHRETW-----------IFLNLNWSIVADMTLYVVLPLR  136 (285)
Q Consensus        80 ~~~~~~~~~~~~~----------~~--~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~  136 (285)
                      ..|.|++++...+          .+  .++....+++.+++++.+|.           ......+.|.|.-...+++.++
T Consensus       216 ~~d~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~  295 (466)
T KOG2532|consen  216 YSDSPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRE  295 (466)
T ss_pred             hcCCcccCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhh
Confidence            8887765432111          00  01112346888999998875           3445667788877778888888


Q ss_pred             cchhHHHHHHHhhhccccchhhhhHHHhHHhhhhh----ccccee------------eeeecccc--ccc---ccccccc
Q psy5252         137 RSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSL----QLGAST------------LVANAMLP--SSL---APSLPFS  195 (285)
Q Consensus       137 ~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~----~~~~~~------------~~~~~~~~--~~~---~~~~~~~  195 (285)
                      .|...++-.     +...+..+++|+++||+.+|.    ..++.+            +.+++...  ..+   .+.+...
T Consensus       296 ~G~~salP~-----l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~  370 (466)
T KOG2532|consen  296 TGFLSALPF-----LAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIG  370 (466)
T ss_pred             hhHHHHHHH-----HHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHH
Confidence            888777655     334445679999999998751    112211            22333221  111   1111111


Q ss_pred             ccccCCcchhhhhccccCCcchh----------hhccccchhhhhhh-h--hhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy5252         196 SSNSTSLPLVSSLDETAHRSDEF----------LAHKSDEFLAHKSD-E--FLALQYALFITSFIEVLGGIFFLLGS  259 (285)
Q Consensus       196 ~~~~~~~~~~~~~~~~~p~~~r~----------l~~~~~p~~~G~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (285)
                      ..+...+..+....|..|++...          ++..++|.+.|.+. |  ...|+..|++.+++.+++.+++.+..
T Consensus       371 ~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  371 LSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFFG  447 (466)
T ss_pred             HcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEee
Confidence            11222233344444555555541          45589999999988 3  45799999999999999887777654

>PRK03545 putative arabinose transporter; Provisional

Probab=99.80  E-value=1.4e-19  Score=157.71  Aligned_cols=240  Identities=11%  Similarity=0.065  Sum_probs=154.0

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      +|++.+...+...++++|++|+|||++++|++..+.++|.+++|++++.+.++++ ||+.|++.+++.++..+......|
T Consensus       107 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~g-w~~~f~~~~~~~~l~~~~~~~~~~  185 (390)
T PRK03545        107 IAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLG-WRTTFLAIGGGALITLLLLIKLLP  185 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHhCC
Confidence            5777788889999999999999999999999999999999999999999999886 999999999888777666655566


Q ss_pred             CCcCccccCccccccccHHHHHHHHhhhhhhHHHHH-----------HHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhh
Q psy5252          82 DPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL-----------NLNWSIVADMTLYVVLPLRRSTAEAFQILISHA  150 (285)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (285)
                      |+++++   +      +..++.+..+|+|.+++...           ...+.+.+.....+.++...+.....     ..
T Consensus       186 ~~~~~~---~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~-----~~  251 (390)
T PRK03545        186 LLPSEH---S------GSLKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLL-----FG  251 (390)
T ss_pred             CCCCCC---c------chHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHH-----HH
Confidence            543211   0      01234556777777654211           11222222222234444433333322     23


Q ss_pred             ccccchhhhhHHHhHHhhhhhcccceee-eee--c--ccccc---c-cccccccccccCCcc-hhhhhccccCCcch---
Q psy5252         151 FGDAGSPYLIGLLSEMFRHSLQLGASTL-VAN--A--MLPSS---L-APSLPFSSSNSTSLP-LVSSLDETAHRSDE---  217 (285)
Q Consensus       151 ~g~~~g~~~~G~l~d~~~~~~~~~~~~~-~~~--~--~~~~~---~-~~~~~~~~~~~~~~~-~~~~~~~~~p~~~r---  217 (285)
                      ++.+++.++.|+++||++++........ ...  .  .....   + ....+...+.....+ ....+.|..|+ .|   
T Consensus       252 ~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~  330 (390)
T PRK03545        252 GAGIIGSVLFSRLGNRHPSGFLLIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-ATDVA  330 (390)
T ss_pred             HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-cHHHH
Confidence            5667778899999999987753322111 011  0  11111   1 111111212222222 34556677664 44   


Q ss_pred             --------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy5252         218 --------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLL  257 (285)
Q Consensus       218 --------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (285)
                              .+|..+||.+.|.+.|+.|++..++..+.+.+++.+....
T Consensus       331 ~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~  378 (390)
T PRK03545        331 MALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSIL  378 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHH
Confidence                    1566889999999999999999998888777777666543

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.79  E-value=6.2e-20  Score=163.57  Aligned_cols=250  Identities=16%  Similarity=0.109  Sum_probs=158.2

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhcc-CCchHHHHHhhHHHHHHHHHHHHh
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVM-GAWPWSLRVTPVLGACAVLLILFF   79 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~-g~wr~~f~i~~~~~~~~~~l~~~~   79 (285)
                      ++|++++...|...++++||+|+++|++++++.+.+..+|..+++++++.+.+.. + ||+.|++.+++.++..++.+.+
T Consensus       140 ~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~g-w~~~f~i~~~~~~~~~~~~~~~  218 (465)
T TIGR00894       140 IQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGG-WPMIFYVFGIVGCAWSLLWFVF  218 (465)
T ss_pred             HHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCeehhhhhHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999999999999999999999874 5 9999999999888877777666


Q ss_pred             ccCCcCccccCcc-c-----------cccccHHHHHHHHhhhhhhHH-----------HHHHHHHHHHHHHHHHhcCCCC
Q psy5252          80 MEDPERGEAEGRV-T-----------EERTSFGEDIRALCKNHRETW-----------IFLNLNWSIVADMTLYVVLPLR  136 (285)
Q Consensus        80 ~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~  136 (285)
                      .+|.|+.+.+.++ +           +++.+.+..++..++++.++.           ......|.|.+.....+.+..+
T Consensus       219 ~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~  298 (465)
T TIGR00894       219 PADDPSIHPCISKFEKKYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKE  298 (465)
T ss_pred             hcCCcccCCCCCHHHHHHHHhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHH
Confidence            6665433221110 0           000111223666777777654           1223456666655555665555


Q ss_pred             cchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccc-----ee----e----eeecc--c-c-cc-ccc-ccccc--
Q psy5252         137 RSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGA-----ST----L----VANAM--L-P-SS-LAP-SLPFS--  195 (285)
Q Consensus       137 ~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~-----~~----~----~~~~~--~-~-~~-~~~-~~~~~--  195 (285)
                      .+...+...     ++..++.++.|+++||+++|+..+.     ..    .    ...+.  . . .. ... .+.+.  
T Consensus       299 ~g~~~~~~~-----~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  373 (465)
T TIGR00894       299 NGLLSSLPY-----LFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANA  373 (465)
T ss_pred             hHHHHHHHH-----HHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            554444332     4556667899999999887644322     11    0    00111  1 1 11 111 11111  


Q ss_pred             ccccCCcchhhhhccccCCcch-----------hhhccccchhhhhhhhhh---hhHHHHHHHHHHHHHHHHHHHH
Q psy5252         196 SSNSTSLPLVSSLDETAHRSDE-----------FLAHKSDEFLAHKSDEFL---ALQYALFITSFIEVLGGIFFLL  257 (285)
Q Consensus       196 ~~~~~~~~~~~~~~~~~p~~~r-----------~l~~~~~p~~~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  257 (285)
                      ..............|..|+ .+           .++..++|.+.|.+.|..   +|+.+|.+.++..+++.++...
T Consensus       374 ~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       374 VSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI  448 (465)
T ss_pred             HhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence            1111222233445566665 33           155578888888887653   4788888887777777766554

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.78  E-value=8.3e-19  Score=151.32  Aligned_cols=238  Identities=9%  Similarity=-0.014  Sum_probs=149.3

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      ++|++++. .+...+.++|++|+|||++++++.+.+.++|.++++++++.+.+.++ ||+.|++.++++++..++.++.+
T Consensus        88 l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~g-Wr~~f~~~~~l~~~~~~~~~~~l  165 (368)
T TIGR00903        88 LAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGG-LQLLIIPIAAVAAAGIILVLAAL  165 (368)
T ss_pred             HHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHHHHHHHHHc
Confidence            36788875 45666777999999999999999999999999999999999999886 99999999998888888888888


Q ss_pred             cCCcCccccCccccccccHHHHHHHHhhhhhhHH-----------HHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhh
Q psy5252          81 EDPERGEAEGRVTEERTSFGEDIRALCKNHRETW-----------IFLNLNWSIVADMTLYVVLPLRRSTAEAFQILISH  149 (285)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (285)
                      ||+++++.+..+  . .+..+.+++++++|.+|.           .+....|.|.+.. ..+.+.+     .+....+..
T Consensus       166 p~~p~~~~~~~~--~-~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~-~~g~s~~-----~~~~~~l~~  236 (368)
T TIGR00903       166 PALPFQAAEGFG--F-KDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALR-PAGLEDI-----AGDAVALAI  236 (368)
T ss_pred             CCCCCCCCCCcc--h-HHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCChH-----HHHHHHHHH
Confidence            887654322111  1 112235677888888765           2234556676653 2333321     222222222


Q ss_pred             hccccchhhhhHHHhHHhhhhhcccc----eee--eeec---ccc--ccccccccccc---cccCCcchhhhhccccCCc
Q psy5252         150 AFGDAGSPYLIGLLSEMFRHSLQLGA----STL--VANA---MLP--SSLAPSLPFSS---SNSTSLPLVSSLDETAHRS  215 (285)
Q Consensus       150 ~~g~~~g~~~~G~l~d~~~~~~~~~~----~~~--~~~~---~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~  215 (285)
                          ..+.+..++++||..|++.++.    ..+  ++..   ...  ...........   .....+..+++.+|.+|++
T Consensus       237 ----~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~  312 (368)
T TIGR00903       237 ----LAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKE  312 (368)
T ss_pred             ----HHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchh
Confidence                2233456889999876532221    110  1111   111  11111111111   1222333567889999999


Q ss_pred             chh-----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy5252         216 DEF-----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFF  255 (285)
Q Consensus       216 ~r~-----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (285)
                      .|.           +++..+|.+.|.+..  +.+..|...++..+++++..
T Consensus       313 ~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~  361 (368)
T TIGR00903       313 LHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA  361 (368)
T ss_pred             hcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence            982           445678888887764  66677776666666666554

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.78  E-value=1.3e-18  Score=154.55  Aligned_cols=253  Identities=13%  Similarity=0.060  Sum_probs=147.7

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHH-HHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGL-GYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~-g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      +|++.+...|...+.+.|++|+|+|++++|+++.+.++|..+ +++++..+.... +||+.|++.+++.++..++..+++
T Consensus       130 ~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~-gw~~~f~i~~~~~~~~~~l~~~~~  208 (452)
T PRK11273        130 CGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFN-DWHAALYMPAFAAILVALFAFAMM  208 (452)
T ss_pred             HHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHc
Confidence            577888888888899999999999999999999999998754 555443443334 599999999888777766777777


Q ss_pred             cCCcCccc-----c--Cc-------cccccccHHHHH-HHHhhhhhhHHHH-----------HHHHHHHHHHHHHHhcCC
Q psy5252          81 EDPERGEA-----E--GR-------VTEERTSFGEDI-RALCKNHRETWIF-----------LNLNWSIVADMTLYVVLP  134 (285)
Q Consensus        81 ~~~~~~~~-----~--~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~  134 (285)
                      ||++++..     +  ++       +++++.+.++.+ +..++++.+|...           ....|.|.+.....+.+.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~  288 (452)
T PRK11273        209 RDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFAL  288 (452)
T ss_pred             cCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence            77654210     0  00       000111222322 2356777765411           122344444333334443


Q ss_pred             CCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccc--e-ee--ee---eccc-c-cc--ccccccccccccCCc
Q psy5252         135 LRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGA--S-TL--VA---NAML-P-SS--LAPSLPFSSSNSTSL  202 (285)
Q Consensus       135 ~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~--~-~~--~~---~~~~-~-~~--~~~~~~~~~~~~~~~  202 (285)
                      .+.+....     ...++.+++.++.|+++||+++++....  . ..  ..   .+.. + ..  ......+..+....+
T Consensus       289 ~~~~~~~~-----~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  363 (452)
T PRK11273        289 DKSSWAYF-----LYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYG  363 (452)
T ss_pred             HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHh
Confidence            33332222     2235556678899999999954332111  1 10  01   1111 1 11  111111111122222


Q ss_pred             c---hhhhhccccCCcchh-----------hhcc-ccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy5252         203 P---LVSSLDETAHRSDEF-----------LAHK-SDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLLGSL  260 (285)
Q Consensus       203 ~---~~~~~~~~~p~~~r~-----------l~~~-~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (285)
                      +   ......|.+|++.|.           ++.. .+|.+.|.+.|+.||+..|.++.++++++.+......+
T Consensus       364 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  436 (452)
T PRK11273        364 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI  436 (452)
T ss_pred             HHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhc
Confidence            2   234567999998871           3333 47999999999999999998888877777666554433

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.77  E-value=8.8e-19  Score=153.43  Aligned_cols=247  Identities=14%  Similarity=0.081  Sum_probs=148.6

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      ++|++.+...+...+++.|++|+|+|++++++++.+..+|..+++.++..+.+..+ ||+.|++.+++.++..++...++
T Consensus       112 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l  190 (406)
T PRK11551        112 LTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAA-WRHIFYVGGVGPLLLVPLLMRWL  190 (406)
T ss_pred             HHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC-HHHHHHHHHHHHHHHHHHHHHhC
Confidence            35788888899999999999999999999999999999999999999998888775 99999998877666666666677


Q ss_pred             cCCcCccccCccccccccHHHHHHHHhhhhh---hHH--------HHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhh
Q psy5252          81 EDPERGEAEGRVTEERTSFGEDIRALCKNHR---ETW--------IFLNLNWSIVADMTLYVVLPLRRSTAEAFQILISH  149 (285)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (285)
                      ||+++...+++.++++++..+......+.+.   ++.        .+....|.|.+.. ..+.++...+......     
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~-----  264 (406)
T PRK11551        191 PESRAFAQAAGAGKQRAPVLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLV-GQGLSRSQAGLVQIAF-----  264 (406)
T ss_pred             CCChhHHhccCcchhhhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCChhhhhHHHHHH-----
Confidence            8765432221111111111111110001111   111        1112233343322 2344444444443322     


Q ss_pred             hccccchhhhhHHHhHHhhhhhcccceeee--ee---cc-cccc--ccc-ccccccc-ccCCcchhhhhccccCCcchh-
Q psy5252         150 AFGDAGSPYLIGLLSEMFRHSLQLGASTLV--AN---AM-LPSS--LAP-SLPFSSS-NSTSLPLVSSLDETAHRSDEF-  218 (285)
Q Consensus       150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~---~~-~~~~--~~~-~~~~~~~-~~~~~~~~~~~~~~~p~~~r~-  218 (285)
                      .++.+++.++.|+++||+++++........  ..   +. .+..  +.+ ..+.... .+......+...|.+|+++|. 
T Consensus       265 ~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~  344 (406)
T PRK11551        265 NIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGT  344 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhh
Confidence            256677788999999999988765442211  11   11 1111  111 1111111 223334467788999999882 


Q ss_pred             ----------hhccccchhhhhhhhhhh-hHHHHHHHHHHHHHHHHH
Q psy5252         219 ----------LAHKSDEFLAHKSDEFLA-LQYALFITSFIEVLGGIF  254 (285)
Q Consensus       219 ----------l~~~~~p~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~  254 (285)
                                ++..++|.+.|.+.|+.+ +...++....+.+++.++
T Consensus       345 ~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~  391 (406)
T PRK11551        345 GVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALA  391 (406)
T ss_pred             hhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHH
Confidence                      566899999999998754 455555544444444443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.76  E-value=1.3e-18  Score=152.68  Aligned_cols=241  Identities=13%  Similarity=0.155  Sum_probs=145.4

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh------ccCCchHHHHHhhHHHHHHHH
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS------VMGAWPWSLRVTPVLGACAVL   74 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~------~~g~wr~~f~i~~~~~~~~~~   74 (285)
                      ++|++++...|...++++||+|+++|++++++++.+.++|.++++++++++.+      ..+ ||+.|++.+++.++..+
T Consensus       105 l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g-wr~~f~~~~~~~l~~~~  183 (412)
T TIGR02332       105 LVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKG-WQWLFLLEGFPSVILGV  183 (412)
T ss_pred             HHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccc-hhHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999998874      244 99999999988887777


Q ss_pred             HHHHhccCCcCccc---c-Ccc--------------ccc----c--ccHHHHHHHHhhhhhhHHH-----------HHHH
Q psy5252          75 LILFFMEDPERGEA---E-GRV--------------TEE----R--TSFGEDIRALCKNHRETWI-----------FLNL  119 (285)
Q Consensus        75 l~~~~~~~~~~~~~---~-~~~--------------~~~----~--~~~~~~~~~~~~~~~~~~~-----------~~~~  119 (285)
                      +..+++||+|++.+   + +++              +.+    +  ...++.++.++ ++.++..           +...
T Consensus       184 ~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  262 (412)
T TIGR02332       184 MTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIF-TPAIMLYTLAYFCLTNTLSAIN  262 (412)
T ss_pred             HHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHH
Confidence            77778888764321   0 000              000    0  00112234333 3444331           1123


Q ss_pred             HHHHHHHHHH-HhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccc-ee--eeeec----ccccc-c-c
Q psy5252         120 NWSIVADMTL-YVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGA-ST--LVANA----MLPSS-L-A  189 (285)
Q Consensus       120 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~-~~--~~~~~----~~~~~-~-~  189 (285)
                      .|.|.+.... .+.+..+.+..     .....++..+|.++.|+++||+++|+.... ..  ....+    ..... . .
T Consensus       263 ~~~p~~l~~~~~~~s~~~~~~~-----~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (412)
T TIGR02332       263 IWTPQILQSFNQGSSNIMIGLL-----AAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQL  337 (412)
T ss_pred             HHHHHHHHhcCCCCcHHHhHHH-----hhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence            4445443221 11222222222     222335667778899999999987653211 11  00001    11111 1 1


Q ss_pred             ccc-cccccccCCcc-hhhhhccccCCcchh-----------hhccccchhhhhhhhhhh-hHHHHHHHHHHH
Q psy5252         190 PSL-PFSSSNSTSLP-LVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLA-LQYALFITSFIE  248 (285)
Q Consensus       190 ~~~-~~~~~~~~~~~-~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~-~~~~~~~~~~~~  248 (285)
                      ..+ +...+.....+ ......|.+|+++|.           ++++++|.+.|.+.|..| |+.++.++.++.
T Consensus       338 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~  410 (412)
T TIGR02332       338 LGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL  410 (412)
T ss_pred             HHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence            111 11111111112 234456788888882           667899999999999875 898887665543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK09952 shikimate transporter; Provisional

Probab=99.76  E-value=9.5e-19  Score=154.72  Aligned_cols=249  Identities=12%  Similarity=-0.002  Sum_probs=145.6

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh--------ccCCchHHHHHhhHHHHHH
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS--------VMGAWPWSLRVTPVLGACA   72 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~--------~~g~wr~~f~i~~~~~~~~   72 (285)
                      ++|++.+..+|...+++.|++|+++|++..+..+.+..+|..++..+...+..        .++ ||+.|++.+++.++.
T Consensus       134 l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~g-Wr~~f~~~~~~~l~~  212 (438)
T PRK09952        134 IQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWG-WRIPFLFSIVLVLIA  212 (438)
T ss_pred             HHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccC-hHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999999888777653        355 999999888775443


Q ss_pred             HHHHHHhccCCcCccccC-ccccccccHHHHHHHHhhhhhhHHH------------HHHHHHHHHHHHHHHhcCCCCcch
Q psy5252          73 VLLILFFMEDPERGEAEG-RVTEERTSFGEDIRALCKNHRETWI------------FLNLNWSIVADMTLYVVLPLRRST  139 (285)
Q Consensus        73 ~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~  139 (285)
                       +......||+++...++ +.++.+.+ .+..+.++++|..+..            +....|.+.+.....+.+...   
T Consensus       213 -~~l~~~~~es~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~---  287 (438)
T PRK09952        213 -LWVRNGMEESAEFEQQQHEQAAAKKR-IPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPREL---  287 (438)
T ss_pred             -HHHHHhCCCChhHHHHHhhccccccc-CCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH---
Confidence             34444556654321111 10011101 0112224455444331            112223333332223333221   


Q ss_pred             hHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee--e---ec--cc--ccc--c-cccccc-ccc-ccCCcchh
Q psy5252         140 AEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV--A---NA--ML--PSS--L-APSLPF-SSS-NSTSLPLV  205 (285)
Q Consensus       140 ~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~---~~--~~--~~~--~-~~~~~~-~~~-~~~~~~~~  205 (285)
                       ......+.. +...++.++.|+++||++||+......+.  +   .+  ..  ...  . ....++ ..+ ....+...
T Consensus       288 -~~~~~~~~g-~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  365 (438)
T PRK09952        288 -FLNIGLLVG-GLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQ  365 (438)
T ss_pred             -HHHHHHHHH-HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence             111111111 23345567899999999998765442211  0   01  01  111  1 111111 111 22344567


Q ss_pred             hhhccccCCcchh------------hhccccchhhhhhhhhh--hhHHHHHHHHHHHHHHHHHHHH
Q psy5252         206 SSLDETAHRSDEF------------LAHKSDEFLAHKSDEFL--ALQYALFITSFIEVLGGIFFLL  257 (285)
Q Consensus       206 ~~~~~~~p~~~r~------------l~~~~~p~~~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  257 (285)
                      +.+.|.+|+++|.            ++++++|.+.|++.|..  +|+..+.+..++.+++.+..+.
T Consensus       366 ~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~  431 (438)
T PRK09952        366 PMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL  431 (438)
T ss_pred             HHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence            8889999999982            45578999999998854  3777777777777777666543

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.76  E-value=1.9e-18  Score=154.72  Aligned_cols=249  Identities=9%  Similarity=-0.003  Sum_probs=154.0

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh-ccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS-VMGAWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~-~~g~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      +|++.+...+...+++.|++|+|||++++++...+..+|.++++.+..++.+ ..| ||..|++.+++.++..+.. ++.
T Consensus       117 ~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~G-Wr~~f~i~a~l~ll~~l~~-~~~  194 (491)
T PRK11010        117 IAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLG-WQGMYWLMAALLIPCIIAT-LLA  194 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-HHHHHHHHHHHHHHHHHHH-Hhc
Confidence            3556667778888999999999999999999999999999999999999998 455 9999999988776665443 456


Q ss_pred             cCCcCccccCccccccccHHHHHHHHhhhhhhHHHH-----------HHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhh
Q psy5252          81 EDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIF-----------LNLNWSIVADMTLYVVLPLRRSTAEAFQILISH  149 (285)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (285)
                      ||++++..+++  +.+++..+.++..++++..+...           ....|.+.+.....+.++++.+....    ...
T Consensus       195 ~e~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~----~~g  268 (491)
T PRK11010        195 PEPTDTIPVPK--TLEQAVVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNK----TLG  268 (491)
T ss_pred             CCCcccccccc--chhhhHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH----HHH
Confidence            77653221111  11112234566666666554311           11223333333334444444333322    222


Q ss_pred             hccccchhhhhHHHhHHhhhhhcccceee--ee---ec-----cccccc--cccccc-cc-cccCCcchhhhhccccCCc
Q psy5252         150 AFGDAGSPYLIGLLSEMFRHSLQLGASTL--VA---NA-----MLPSSL--APSLPF-SS-SNSTSLPLVSSLDETAHRS  215 (285)
Q Consensus       150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~~~--~~---~~-----~~~~~~--~~~~~~-~~-~~~~~~~~~~~~~~~~p~~  215 (285)
                      .++.++|.+++|+++||+++++.......  ++   .+     ..++..  ....++ .. .....+...+...+.++++
T Consensus       269 ~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~  348 (491)
T PRK11010        269 LLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKS  348 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            35667778899999999998765433111  10   11     011111  111111 00 1112233456667777776


Q ss_pred             ch-----------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy5252         216 DE-----------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLLG  258 (285)
Q Consensus       216 ~r-----------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (285)
                      .+           .++..+++.+.|.+.|..||+..|.+.+++.+++.+.....
T Consensus       349 ~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        349 FSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            65           15556778889999999999998888877777776655544

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.76  E-value=1.2e-18  Score=153.86  Aligned_cols=242  Identities=15%  Similarity=0.101  Sum_probs=138.3

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh--------ccCCchHHHHHhhHHHHHH
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS--------VMGAWPWSLRVTPVLGACA   72 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~--------~~g~wr~~f~i~~~~~~~~   72 (285)
                      ++|++.|+.+|...++++|++|+++|+++.++.+.+.+.|..+++.+...+..        .++ ||+.|++.++++++.
T Consensus       133 l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g-Wr~~F~i~~~~~ll~  211 (432)
T PRK10406        133 FQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWG-WRIPFALGAVLAVVA  211 (432)
T ss_pred             HHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccc-hHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999888887665542        455 999999888777654


Q ss_pred             HHHHHHhccCCcCccccCccccccccHHHHHHHHhhhhhhHHHH------------HHHHHHHHHHHHHHhcCCCCcchh
Q psy5252          73 VLLILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIF------------LNLNWSIVADMTLYVVLPLRRSTA  140 (285)
Q Consensus        73 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~  140 (285)
                      . +.+..+||+++.+.++.  ++    ..+++.+++++..+...            ....|.|.+.....+.+..+.+..
T Consensus       212 ~-~~~~~~~e~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~  284 (432)
T PRK10406        212 L-WLRRQLDETSQQETRAL--KE----AGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGI  284 (432)
T ss_pred             H-HHHhcCCCCchHHHhhh--cc----cccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            3 44445566543221111  11    12344556666554311            122334443332333333222222


Q ss_pred             HHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee---ee--cc--cc---cc-ccccccc-c-cc-ccCCcchhh
Q psy5252         141 EAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV---AN--AM--LP---SS-LAPSLPF-S-SS-NSTSLPLVS  206 (285)
Q Consensus       141 ~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~---~~--~~--~~---~~-~~~~~~~-~-~~-~~~~~~~~~  206 (285)
                      ..    +.. +...++.++.|+++||++||+........   ..  +.  ..   .. ..+.+.. . .. ....++...
T Consensus       285 ~~----i~~-~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (432)
T PRK10406        285 MT----AAL-FVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGI  359 (432)
T ss_pred             HH----HHH-HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22    122 23344566889999999998755432110   10  11  11   11 1111111 1 11 122234567


Q ss_pred             hhccccCCcchh--------hh----ccccchhhhhhhhhhh-hHHHHHHHHHHHHHHHHHHH
Q psy5252         207 SLDETAHRSDEF--------LA----HKSDEFLAHKSDEFLA-LQYALFITSFIEVLGGIFFL  256 (285)
Q Consensus       207 ~~~~~~p~~~r~--------l~----~~~~p~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~  256 (285)
                      .++|.+|++.|.        ++    +...|.+.+.+ +..| +...+++.++..+++.+..+
T Consensus       360 ~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~  421 (432)
T PRK10406        360 LKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSL  421 (432)
T ss_pred             HHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHH
Confidence            788999999992        22    23566667754 4445 55556655555555555444

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.75  E-value=3.4e-19  Score=159.73  Aligned_cols=251  Identities=16%  Similarity=0.068  Sum_probs=143.1

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh--------ccCCchHHHHHhhHHHHHH
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS--------VMGAWPWSLRVTPVLGACA   72 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~--------~~g~wr~~f~i~~~~~~~~   72 (285)
                      ++|++.|..++...++++||+|+|+|+++.++.+.+..+|..+++.+...+..        .++ ||+.|++.+++.++ 
T Consensus       127 l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~g-WR~~f~i~~~~~l~-  204 (490)
T PRK10642        127 AQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWG-WRIPFFIALPLGII-  204 (490)
T ss_pred             HHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCcc-HHHHHHHHHHHHHH-
Confidence            47999999999999999999999999999999999999998888877655432        455 99999987766554 


Q ss_pred             HHHHHHhccCCcCccccCc---c-ccc--cccHHHHHHHHhhh-hh-hHH-----------HHHHHHHHHHHHHHHHhcC
Q psy5252          73 VLLILFFMEDPERGEAEGR---V-TEE--RTSFGEDIRALCKN-HR-ETW-----------IFLNLNWSIVADMTLYVVL  133 (285)
Q Consensus        73 ~~l~~~~~~~~~~~~~~~~---~-~~~--~~~~~~~~~~~~~~-~~-~~~-----------~~~~~~~~~~~~~~~~~~~  133 (285)
                      .++++..+||+++...+.+   + +++  ++....+++.++++ +. +..           .+....|.|.+....++.+
T Consensus       205 ~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s  284 (490)
T PRK10642        205 GLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYS  284 (490)
T ss_pred             HHHHHHcCCCChhHHHHHHhhhhhccccccccccCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            3455567787654211100   0 000  00001122223321 11 111           1112234444332223333


Q ss_pred             CCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceee--e-ee---cc--ccc-c--cccccccc-c-cccC
Q psy5252         134 PLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTL--V-AN---AM--LPS-S--LAPSLPFS-S-SNST  200 (285)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~--~-~~---~~--~~~-~--~~~~~~~~-~-~~~~  200 (285)
                      ...     +........++..++.++.|+++||++||+......+  . ..   +.  ... .  +..+.++. . ....
T Consensus       285 ~~~-----~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  359 (490)
T PRK10642        285 EDH-----GVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCF  359 (490)
T ss_pred             HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence            221     2222333446667778899999999999976544221  1 00   10  111 1  11111111 1 1123


Q ss_pred             CcchhhhhccccCCcchh-----------hhccccchhhhhhhhhhh-hHHHHHHHHHHHHHHHHHHHHH
Q psy5252         201 SLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLA-LQYALFITSFIEVLGGIFFLLG  258 (285)
Q Consensus       201 ~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  258 (285)
                      .+.....+.|.+|++.|.           +++.++|.+.|++.+..+ +...+++..+..+++.+..++.
T Consensus       360 ~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~  429 (490)
T PRK10642        360 TGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTM  429 (490)
T ss_pred             HHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence            344566778999999992           234678999999888654 5555554455555555544443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.75  E-value=9e-18  Score=148.59  Aligned_cols=250  Identities=12%  Similarity=0.085  Sum_probs=150.2

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh-ccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS-VMGAWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~-~~g~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      .|++.+..++.....+.|++|+++|++++++++.+.++|..+++++.+.... .. +||+.|++.+++.++..++..+++
T Consensus       128 ~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~-~w~~~f~~~~~~~~i~~~~~~~~~  206 (438)
T TIGR00712       128 NGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFN-DWHAALYFPAICAIIVALFAFAMM  206 (438)
T ss_pred             HHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhc
Confidence            4677788888889999999999999999999999999999999988776544 45 499999999988887776667777


Q ss_pred             cCCcCccc----c---Ccc-----c--cccccHHHH-HHHHhhhhhhHHHH-----------HHHHHHHHHHHHHHhcCC
Q psy5252          81 EDPERGEA----E---GRV-----T--EERTSFGED-IRALCKNHRETWIF-----------LNLNWSIVADMTLYVVLP  134 (285)
Q Consensus        81 ~~~~~~~~----~---~~~-----~--~~~~~~~~~-~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~  134 (285)
                      ||++++..    +   .+.     +  +++.+.++. .+..++++.++...           ....|.|.+.....+.++
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~  286 (438)
T TIGR00712       207 RDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFAL  286 (438)
T ss_pred             cCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCh
Confidence            77543210    0   000     0  001111222 12356777665521           122344444333334444


Q ss_pred             CCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhccccee--e----e--eecccc---cc-ccccccccccccCCc
Q psy5252         135 LRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGAST--L----V--ANAMLP---SS-LAPSLPFSSSNSTSL  202 (285)
Q Consensus       135 ~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~--~----~--~~~~~~---~~-~~~~~~~~~~~~~~~  202 (285)
                      .+.+.....     ..++.+++.++.|+++||+++++......  .    .  ..+...   .. ......+..+.+..+
T Consensus       287 ~~~~~~~~~-----~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  361 (438)
T TIGR00712       287 DKSSWAYFL-----YEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYG  361 (438)
T ss_pred             hhHHHHHHH-----HHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHcc
Confidence            443333332     22455667889999999996553222211  0    0  001111   11 111111111112223


Q ss_pred             ch---hhhhccccCCcchh-----------hh-ccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy5252         203 PL---VSSLDETAHRSDEF-----------LA-HKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLL  257 (285)
Q Consensus       203 ~~---~~~~~~~~p~~~r~-----------l~-~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (285)
                      +.   .....|.+|++.|.           ++ ..++|.+.|.+.|+.||+.+++....+.+++.+..+.
T Consensus       362 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  431 (438)
T TIGR00712       362 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  431 (438)
T ss_pred             HHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            32   23467899988871           33 3579999999999999999988776666666555443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.75  E-value=2.1e-18  Score=151.70  Aligned_cols=245  Identities=14%  Similarity=0.015  Sum_probs=149.6

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      +|++.+...++..+++.|++|+++|++++++.+.+.++|..+|+.+++.+.+..+ ||+.|++.++..++..++ ...+|
T Consensus       120 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~l~  197 (417)
T PRK10489        120 DGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGG-VAWNYGLAAAGTFITLLP-LLRLP  197 (417)
T ss_pred             HHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHH-HHhCC
Confidence            4666677778889999999999999999999999999999999999999998776 999999887776655543 44556


Q ss_pred             CCcCccccCccccccccHHHHHHHHhhhhhhHHHHH----------HHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhc
Q psy5252          82 DPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL----------NLNWSIVADMTLYVVLPLRRSTAEAFQILISHAF  151 (285)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (285)
                      ++++++.++  +++.++.++.++..+++|.++....          ...|.|.+.....+.++...+...+     ...+
T Consensus       198 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~-----~~~~  270 (417)
T PRK10489        198 ALPPPPQPR--EHPLRSLLAGFRFLLASPVVGGIALLGGLLTMASAVRVLYPALADEVWQMGAAQIGLLYA-----AVPL  270 (417)
T ss_pred             CCCCCCccc--ccchHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhHHHhhHHHHHhccCCChhHhHHHHH-----HHHH
Confidence            543322111  1112234455666777777544211          1112233222223444433333333     2236


Q ss_pred             cccchhhhhHHHhHHhhhhhccccee--eee---eccc-ccc-c-ccc-ccccccccCCcc-hhhhhccccCCcchh---
Q psy5252         152 GDAGSPYLIGLLSEMFRHSLQLGAST--LVA---NAML-PSS-L-APS-LPFSSSNSTSLP-LVSSLDETAHRSDEF---  218 (285)
Q Consensus       152 g~~~g~~~~G~l~d~~~~~~~~~~~~--~~~---~~~~-~~~-~-~~~-~~~~~~~~~~~~-~~~~~~~~~p~~~r~---  218 (285)
                      +.+++.++.+++.||.++++......  ..+   .+.. +.. . ... .++..+.+...+ ..+.+.|..|++.|.   
T Consensus       271 g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~  350 (417)
T PRK10489        271 GAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRIN  350 (417)
T ss_pred             HHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence            66777788899998855543332211  111   1111 111 1 111 111112222222 356788999998871   


Q ss_pred             --------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy5252         219 --------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFF  255 (285)
Q Consensus       219 --------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (285)
                              ++..+||.+.|.+.|..|++.++...+++.++.+++.
T Consensus       351 g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~  395 (417)
T PRK10489        351 GLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLL  395 (417)
T ss_pred             HHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence                    5678999999999999998887876665554444443

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.74  E-value=2.7e-18  Score=151.26  Aligned_cols=238  Identities=16%  Similarity=0.075  Sum_probs=139.8

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      ++|++.+..++....++.|++|+|+|+++++++..+..+|.++++.+.+.+.+.++ ||+.|++..+..++ .+......
T Consensus       115 l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~-w~~~f~i~~~~~~~-~~~~~~~~  192 (426)
T PRK12307        115 IVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG-WRAAFFVGLLPVLL-VIYIRARA  192 (426)
T ss_pred             HHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCC-HHHHHHHHHHHHHH-HHHHHHHC
Confidence            36888899999999999999999999999999999999999999999999988886 99999875443322 22222233


Q ss_pred             cCCcCccccC--ccc-ccc---ccHHHHHHHHhhhhhhHHHH-----H---------HHHHHHHHHHHHHhcCCCCcchh
Q psy5252          81 EDPERGEAEG--RVT-EER---TSFGEDIRALCKNHRETWIF-----L---------NLNWSIVADMTLYVVLPLRRSTA  140 (285)
Q Consensus        81 ~~~~~~~~~~--~~~-~~~---~~~~~~~~~~~~~~~~~~~~-----~---------~~~~~~~~~~~~~~~~~~~~~~~  140 (285)
                      ||+++...++  +++ +++   ......++..++++.++...     .         ...|.+.+.. ..+.++...+..
T Consensus       193 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~  271 (426)
T PRK12307        193 PESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLA-GEGFDTGVVSNL  271 (426)
T ss_pred             CCChHHHHhhhhccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHH
Confidence            4432211110  000 000   11123456677777654311     0         1112222211 122222222222


Q ss_pred             HHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee-----eec-cccc-c-ccc-ccccc---ccccCCcchhhhh
Q psy5252         141 EAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV-----ANA-MLPS-S-LAP-SLPFS---SSNSTSLPLVSSL  208 (285)
Q Consensus       141 ~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~-----~~~-~~~~-~-~~~-~~~~~---~~~~~~~~~~~~~  208 (285)
                           .....++.+++.++.|+++||+++|+......+.     ... ..+. . ... ...+.   ...+..+.....+
T Consensus       272 -----~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (426)
T PRK12307        272 -----MTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFL  346 (426)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence                 2223355677788999999999988755432211     000 1111 1 111 11111   1122233345677


Q ss_pred             ccccCCcchh-----------hhccccchhhhhhhhhhhhHHHHHHHHH
Q psy5252         209 DETAHRSDEF-----------LAHKSDEFLAHKSDEFLALQYALFITSF  246 (285)
Q Consensus       209 ~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~  246 (285)
                      .|.+|++.|.           +++.++|.+.|++.|+.|+....+...+
T Consensus       347 ~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~~  395 (426)
T PRK12307        347 YDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIVA  395 (426)
T ss_pred             HHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            8999998872           5668999999999999987765544333

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.74  E-value=4e-18  Score=152.17  Aligned_cols=250  Identities=12%  Similarity=0.014  Sum_probs=140.5

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh---------ccCCchHHHHHhhHHHHHH
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS---------VMGAWPWSLRVTPVLGACA   72 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~---------~~g~wr~~f~i~~~~~~~~   72 (285)
                      +|++.+.. +....++++++|+++|++++|+.+...++|..+++.+.+.+..         ..+ ||+.|++.+++.++.
T Consensus       134 ~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~g-Wr~~f~i~g~l~l~~  211 (476)
T PLN00028        134 IGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTA-WRIAFFVPGLLHIIM  211 (476)
T ss_pred             HHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhh-hHHHHHHHHHHHHHH
Confidence            46666654 3456789999999999999999998888888877776655532         134 999999999988877


Q ss_pred             HHHHHHhccCCcCccccC---ccccccccHHHHHHHHhhhhhhHHHHH-----------HHHHHHHHHHHHHhcCCCCcc
Q psy5252          73 VLLILFFMEDPERGEAEG---RVTEERTSFGEDIRALCKNHRETWIFL-----------NLNWSIVADMTLYVVLPLRRS  138 (285)
Q Consensus        73 ~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~  138 (285)
                      .++..++.+++|+.+.++   +.+.++.+..+.++..++++.+|....           ..+|.+.+....++.++...+
T Consensus       212 ~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~  291 (476)
T PLN00028        212 GILVLTLGQDLPDGNYRELKKSGTMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAG  291 (476)
T ss_pred             HHHHHHHcCcCCCCchhhHHhcCccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHH
Confidence            766666555544321111   001111223344566677777554211           122344443333344443333


Q ss_pred             hhHHHHHHHhhhccccchhhhhHHHhHHhhhhhccc--c----ee-ee-----eeccccc-c-c-c-ccccccc-cccCC
Q psy5252         139 TAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLG--A----ST-LV-----ANAMLPS-S-L-A-PSLPFSS-SNSTS  201 (285)
Q Consensus       139 ~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~--~----~~-~~-----~~~~~~~-~-~-~-~~~~~~~-~~~~~  201 (285)
                      ......     .++..++.++.|+++||+++|+..+  .    .. ..     ..+.... . . . ...++.. .....
T Consensus       292 ~~~~~~-----~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  366 (476)
T PLN00028        292 AIAASF-----GLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAAC  366 (476)
T ss_pred             HHHHHH-----HHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhh
Confidence            332222     2555667889999999999874221  1    01 00     0011111 1 1 1 1111111 11222


Q ss_pred             cchhhhhccccCCcchh-------hhccccchhhhhhhh---hhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy5252         202 LPLVSSLDETAHRSDEF-------LAHKSDEFLAHKSDE---FLALQYALFITSFIEVLGGIFFLLGS  259 (285)
Q Consensus       202 ~~~~~~~~~~~p~~~r~-------l~~~~~p~~~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (285)
                      +...+...+..| +.+.       .++.+++.+.+.+.+   ..+|+.+|++.+++.++++++.++.+
T Consensus       367 ~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        367 GATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             hhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            334444556554 4441       333566777776655   33588999988888888887776654

>PRK15075 citrate-proton symporter; Provisional

Probab=99.73  E-value=7.7e-18  Score=148.85  Aligned_cols=227  Identities=14%  Similarity=0.057  Sum_probs=127.4

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhh--------hccCCchHHHHHhhHHHHHH
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAF--------SVMGAWPWSLRVTPVLGACA   72 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~--------~~~g~wr~~f~i~~~~~~~~   72 (285)
                      ++|++.+...+...++++|++|+|+|++++++...+.++|..+++.+++.+.        +.++ ||++|++..+.. +.
T Consensus       126 l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~g-Wr~~f~~~~~~~-~~  203 (434)
T PRK15075        126 LQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWG-WRIPFLIGCLIV-PF  203 (434)
T ss_pred             HhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccc-hHHHHHHHHHHH-HH
Confidence            4688999999999999999999999999999999998888888888887763        3465 999998754332 22


Q ss_pred             HHHHHHhccCCcCccccCccccccccHHHHHHHHhhhhhhHH------------HHHHHHHHHHHHHHHHhcCCCCcchh
Q psy5252          73 VLLILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETW------------IFLNLNWSIVADMTLYVVLPLRRSTA  140 (285)
Q Consensus        73 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (285)
                      ........||+++...++    ++.+.++.++...+++..+.            ......|.|.+.....+.+..+.+..
T Consensus       204 ~~~~~~~~~e~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~  279 (434)
T PRK15075        204 IFLIRRSLEETEEFLARK----HRPSMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLV  279 (434)
T ss_pred             HHHHHHhcCCCHHHHHhh----hccccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            222222233322100000    11111222333333333221            11122334443333334443332222


Q ss_pred             HHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceee---eeec----cc-c-ccc---ccc-ccccccc-cCCcchhh
Q psy5252         141 EAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTL---VANA----ML-P-SSL---APS-LPFSSSN-STSLPLVS  206 (285)
Q Consensus       141 ~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~---~~~~----~~-~-~~~---~~~-~~~~~~~-~~~~~~~~  206 (285)
                           .....++.+++.++.|+++||++||+.......   ....    .. . ...   ... ....... ...+....
T Consensus       280 -----~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  354 (434)
T PRK15075        280 -----TLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVV  354 (434)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHH
Confidence                 222235556678899999999999876543211   1000    00 1 111   111 1111112 22233456


Q ss_pred             hhccccCCcchh------------hhccccchhhhhhhhhhhhH
Q psy5252         207 SLDETAHRSDEF------------LAHKSDEFLAHKSDEFLALQ  238 (285)
Q Consensus       207 ~~~~~~p~~~r~------------l~~~~~p~~~G~~~~~~~~~  238 (285)
                      ...|.+|+++|.            +++.++|.+.|.+.|+.|++
T Consensus       355 ~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        355 ALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            788999999982            23456999999999988853

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.73  E-value=8.7e-18  Score=145.06  Aligned_cols=241  Identities=11%  Similarity=0.041  Sum_probs=149.0

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      +|++.+..++.....+.+++| |+|+++++++..+.++|..+++++.+.+.+..+ ||+.|++.+++.++..+...++++
T Consensus       101 ~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~~~~  178 (377)
T TIGR00890       101 ASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEG-VPAAFIYMGIIFLLVIVLGAFLIG  178 (377)
T ss_pred             HhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHhee
Confidence            577888888888899999996 689999999999999999888888888777775 999999999988887777777777


Q ss_pred             CCcCccccCccccccccHHHHHHHHhhhhhhHHHHHH---H--------HHHHHHHHHHHhcCCCCcchhHHHHHHHhhh
Q psy5252          82 DPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFLN---L--------NWSIVADMTLYVVLPLRRSTAEAFQILISHA  150 (285)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (285)
                      ++++++.+++++.  .+.....+..++++.++.....   .        .+.+.+ ....+.+...    .+ .......
T Consensus       179 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~-~~~~~~~  250 (377)
T TIGR00890       179 YPPGQLIKTNIEV--SVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPY-GQSLGLSDGF----LV-LAVSISS  250 (377)
T ss_pred             cCchhccccCccc--chhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHH-HHHcCCCHHH----HH-HHHHHHH
Confidence            6554322111111  1112234556677766542110   0        011111 1111222111    12 1222223


Q ss_pred             ccccchhhhhHHHhHHhhhhhcccceeee--ee---cc-ccc-c---c-cccccccc-cccCCcchhhhhccccCCcchh
Q psy5252         151 FGDAGSPYLIGLLSEMFRHSLQLGASTLV--AN---AM-LPS-S---L-APSLPFSS-SNSTSLPLVSSLDETAHRSDEF  218 (285)
Q Consensus       151 ~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~---~~-~~~-~---~-~~~~~~~~-~~~~~~~~~~~~~~~~p~~~r~  218 (285)
                      ++.+++.++.|+++||++||+........  +.   .. .+. .   . ........ ...........+.|.+|+++|.
T Consensus       251 ~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~  330 (377)
T TIGR00890       251 IFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSA  330 (377)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhh
Confidence            55667788999999999998755432211  00   00 111 1   1 11111111 1222334456788999999871


Q ss_pred             -----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHH
Q psy5252         219 -----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGG  252 (285)
Q Consensus       219 -----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~  252 (285)
                                 ++..++|.+.|.+.|+.||+..+.+.+++.+++.
T Consensus       331 ~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       331 ANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence                       6678999999999999999999887776655543

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.72  E-value=1.6e-17  Score=147.57  Aligned_cols=248  Identities=14%  Similarity=0.052  Sum_probs=144.9

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      +|++.+...+...+++.++++ ++|++++++.+.+..+|..+++++++.+.+.++ ||+.|++.+++.++..+...+..+
T Consensus       118 ~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g-wr~~f~~~~~~~~~~~v~~~~~~~  195 (455)
T TIGR00892       118 TGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFG-WRGSFLILGGLLLHCCVCGALMRP  195 (455)
T ss_pred             HHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHhCC
Confidence            577888777788889999995 789999999999999999999999999999886 999999999887766555444433


Q ss_pred             CCcCcc---cc--C----cccccc-------ccHHHHH-HHHhhhhhhHHHHHH-----------HHHHHHHHHHHHhcC
Q psy5252          82 DPERGE---AE--G----RVTEER-------TSFGEDI-RALCKNHRETWIFLN-----------LNWSIVADMTLYVVL  133 (285)
Q Consensus        82 ~~~~~~---~~--~----~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~  133 (285)
                      +++.++   .+  +    +...++       ++..+.. ...+++|.++.....           ..+.+.+. ...+.+
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~-~~~g~s  274 (455)
T TIGR00892       196 VGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYA-KDKGVD  274 (455)
T ss_pred             CCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHHHHHHHHccchHHHHHHHH-HHcCCC
Confidence            322110   00  0    000000       0001100 135677776652211           11222222 122333


Q ss_pred             CCCcchhHHHHHHHhhhccccchhhhhHHHhHHhh--hhhccccee--ee--eec---cccc-c--c-ccccccccccc-
Q psy5252         134 PLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFR--HSLQLGAST--LV--ANA---MLPS-S--L-APSLPFSSSNS-  199 (285)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~--~~~~~~~~~--~~--~~~---~~~~-~--~-~~~~~~~~~~~-  199 (285)
                      +.+.+...+.     ..++.+++.++.|+++||..  +++......  +.  ..+   .... .  + ...++...+.+ 
T Consensus       275 ~~~~g~~~~~-----~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~  349 (455)
T TIGR00892       275 EYEAAFLLSI-----IGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGS  349 (455)
T ss_pred             HHHHHHHHHH-----HHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhch
Confidence            3333333222     23555666778999999732  222111111  11  111   1111 1  1 11222222222 


Q ss_pred             CCcchhhhhccccCCcch-----------hhhccccchhhhhhhhhhh-hHHHHHHHHHHHHHHHHHHHH
Q psy5252         200 TSLPLVSSLDETAHRSDE-----------FLAHKSDEFLAHKSDEFLA-LQYALFITSFIEVLGGIFFLL  257 (285)
Q Consensus       200 ~~~~~~~~~~~~~p~~~r-----------~l~~~~~p~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  257 (285)
                      ......+.+.|.+|++++           .+++.++|.+.|.+.|..+ |+..|+..+++.+++.+....
T Consensus       350 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~~~  419 (455)
T TIGR00892       350 VGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFLAI  419 (455)
T ss_pred             HHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHHHH
Confidence            233456778899998876           2677999999999999874 999998888777776654443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.72  E-value=2.6e-17  Score=143.59  Aligned_cols=237  Identities=11%  Similarity=0.092  Sum_probs=143.3

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      ++|++.+...|...+++.|++|+|+|++++++...+.++|..++|++++.+.+.++ ||+.|++.+++.++..+......
T Consensus       117 l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g-w~~~f~~~~~l~~~~~l~~~~~~  195 (394)
T PRK10213        117 CLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIG-WRNVFNAAAVMGVLCIFWIIKSL  195 (394)
T ss_pred             HHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHHHHHHC
Confidence            36888889999999999999999999999999999999999999999999999886 99999998877766554444445


Q ss_pred             cCCcCccccCccccccccHHHHHHHHhhhhhhHHHHH-----------HHHHHHHHHHHHHhcCCCCcchhHHHHHHHhh
Q psy5252          81 EDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL-----------NLNWSIVADMTLYVVLPLRRSTAEAFQILISH  149 (285)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (285)
                      ||+++++.     +    ..+..+..+++|.++....           ...+.+.....+++.+++..+....     ..
T Consensus       196 p~~~~~~~-----~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~-----~~  261 (394)
T PRK10213        196 PSLPGEPS-----H----QKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLL-----SF  261 (394)
T ss_pred             CCCCcccc-----c----chhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHH-----HH
Confidence            55432110     0    1122345667776654211           1111111112233444433333222     22


Q ss_pred             hccccchhhhhHHHhHHhhhhhcccceee--eeec---cccc-c--c-cccccccccccCCcc-hhhhhccccCCcch--
Q psy5252         150 AFGDAGSPYLIGLLSEMFRHSLQLGASTL--VANA---MLPS-S--L-APSLPFSSSNSTSLP-LVSSLDETAHRSDE--  217 (285)
Q Consensus       150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~~~--~~~~---~~~~-~--~-~~~~~~~~~~~~~~~-~~~~~~~~~p~~~r--  217 (285)
                      .++.+++.++.|++.||.+++.......+  ...+   ...+ .  + ....+...+.+...+ ..+.+++..|++..  
T Consensus       262 ~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~  341 (394)
T PRK10213        262 GIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQAEKA  341 (394)
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcccHHHH
Confidence            35666677788888888543321111110  0101   1111 1  1 111222222233333 34567777775432  


Q ss_pred             --------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHH
Q psy5252         218 --------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGG  252 (285)
Q Consensus       218 --------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~  252 (285)
                              .++..+||.+.|.+.|..|++..+...+.+.++..
T Consensus       342 ~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~  384 (394)
T PRK10213        342 GSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTA  384 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHH
Confidence                    26778999999999999998888877665544443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.71  E-value=2.2e-17  Score=148.39  Aligned_cols=244  Identities=16%  Similarity=0.060  Sum_probs=139.6

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      +|++.+...+...+++.|++|+|+|+++++++..+.++|..+++.+.+.+.+.++ ||+.|++..+.. +..++.....|
T Consensus       118 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-w~~~f~~~~~~~-~~~~~~~~~~p  195 (496)
T PRK03893        118 IGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWG-WRALFFIGILPI-IFALWLRKNLP  195 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHH-HHHHHHHHhCC
Confidence            5778888889999999999999999999999999999999999999999999886 999998754433 33333344455


Q ss_pred             CCcCccccCccccccccHHHH--------HH------------HHhhh----------------------------hhhH
Q psy5252          82 DPERGEAEGRVTEERTSFGED--------IR------------ALCKN----------------------------HRET  113 (285)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~--------~~------------~~~~~----------------------------~~~~  113 (285)
                      |+++...+++...+..+..+.        ..            .....                            +...
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (496)
T PRK03893        196 EAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWP  275 (496)
T ss_pred             CchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchh
Confidence            543211111000000000000        00            00000                            0000


Q ss_pred             H--H-----H--H-----HHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee
Q psy5252         114 W--I-----F--L-----NLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV  179 (285)
Q Consensus       114 ~--~-----~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~  179 (285)
                      .  .     .  .     ...+.|.+.....+.++.+.+...     ....++.+++.++.|+++||+++++........
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~-----~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~  350 (496)
T PRK03893        276 TGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVL-----FFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLI  350 (496)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            0  0     0  0     011223332223333333333332     233466677888999999999988765432211


Q ss_pred             --e----ecccc-cc-c-c-ccccc--cccccCCcchhhhhccccCCcchh-----------hhccccchhhhhhhhhhh
Q psy5252         180 --A----NAMLP-SS-L-A-PSLPF--SSSNSTSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLA  236 (285)
Q Consensus       180 --~----~~~~~-~~-~-~-~~~~~--~~~~~~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~  236 (285)
                        +    ..... .. . . ...+.  ..+.+......+.++|.+|++.|.           ++..++|.+.|.+.|+.|
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g  430 (496)
T PRK03893        351 SQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLD  430 (496)
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCC
Confidence              0    00111 11 1 1 11111  112334445567788999998871           566799999999999999


Q ss_pred             hHHHHHHHHHHHHHHH
Q psy5252         237 LQYALFITSFIEVLGG  252 (285)
Q Consensus       237 ~~~~~~~~~~~~~~~~  252 (285)
                      ++..+...+..+.+..
T Consensus       431 ~~~~~~~~~~~~~~~~  446 (496)
T PRK03893        431 LGTALASLSFSLTFVV  446 (496)
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            9887765554443333

>TIGR00897 2A0118 polyol permease family

Probab=99.71  E-value=3.8e-17  Score=143.04  Aligned_cols=247  Identities=12%  Similarity=0.008  Sum_probs=148.7

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHH-HHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGS-GLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~-~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      +|++.+...+...+.+.+++|+|||++++|+++++.++|. .+++.+++++.+.++ |+..++.......+..++..++.
T Consensus       115 ~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~  193 (402)
T TIGR00897       115 RGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG-EMNTLWSALAFVLTGGVIALFSN  193 (402)
T ss_pred             HHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-hHHHHHHHHHHHHHHHHHHHhcc
Confidence            5777777778888889999999999999999999999997 589999999988775 77766655444444444444445


Q ss_pred             cCCcCccccCccccccccHHHHHHHHhhhhhhHHHH-----------HHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhh
Q psy5252          81 EDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIF-----------LNLNWSIVADMTLYVVLPLRRSTAEAFQILISH  149 (285)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (285)
                      +++++++.+++ +++..+..+.++.++++|.++...           ....|.|.+. ..++.++.+.+...+.     .
T Consensus       194 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~-----~  266 (402)
T TIGR00897       194 KDIFTPQHMQT-REKFSELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFV-AELGFSTSEWLQIWGT-----F  266 (402)
T ss_pred             CCCCCcccccC-CcchhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCChhHHHHHHHH-----H
Confidence            54322211111 111122344566778888776421           1223444332 3344444433332222     2


Q ss_pred             hccccchhhhhHHHhHHhhhhhcccce-e--ee---eecc-----cccc---c-cccccccccccCCcchhhhhccccCC
Q psy5252         150 AFGDAGSPYLIGLLSEMFRHSLQLGAS-T--LV---ANAM-----LPSS---L-APSLPFSSSNSTSLPLVSSLDETAHR  214 (285)
Q Consensus       150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~-~--~~---~~~~-----~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~p~  214 (285)
                      .++..++.+..|+++||+++|+..... .  ..   ..+.     ....   + ........+.+...+....+.|..| 
T Consensus       267 ~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~-  345 (402)
T TIGR00897       267 FFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPLAAVFPTLAP-  345 (402)
T ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc-
Confidence            255667788999999999988754321 1  00   0111     0111   1 1111111112223344555667655 


Q ss_pred             cch-----------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy5252         215 SDE-----------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLL  257 (285)
Q Consensus       215 ~~r-----------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (285)
                      ++|           .+++.++|.+.|.+.|..|+...+++.+++.+++.++..+
T Consensus       346 ~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       346 KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            455           1566899999999999999999888887777666655443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK03699 putative transporter; Provisional

Probab=99.70  E-value=8.8e-17  Score=140.34  Aligned_cols=244  Identities=10%  Similarity=0.095  Sum_probs=148.2

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh-ccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS-VMGAWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~-~~g~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      +|++.+...+...+++.|++|+++|++++++.+....+|..++|.+.+.+.. ..+ ||+.|.+.+++.++..++.. ..
T Consensus       105 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~g-w~~~f~~~~~~~~~~~~~~~-~~  182 (394)
T PRK03699        105 LGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIE-WYWVYACIGLVYVAIFILTL-FS  182 (394)
T ss_pred             HHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHHHH-hc
Confidence            5778888888999999999999999999999999999999999999888765 454 99999988887766554433 22


Q ss_pred             cCCcCccccCccccccccHHHHHHHHhhhhhhHH-----------HHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhh
Q psy5252          81 EDPERGEAEGRVTEERTSFGEDIRALCKNHRETW-----------IFLNLNWSIVADMTLYVVLPLRRSTAEAFQILISH  149 (285)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (285)
                      +.|+.++.++++  ++...    +..+ ++.++.           ......|.|.+....++.++.+.+...+...    
T Consensus       183 ~~p~~~~~~~~~--~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~----  251 (394)
T PRK03699        183 EFPALGKHAPKA--DKPVA----KEKW-GIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFW----  251 (394)
T ss_pred             CCccccccCccc--cCccc----cccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHH----
Confidence            222111111111  01000    0011 122211           1234467777765566777666665555333    


Q ss_pred             hccccchhhhhHHHhHHhhhhhcccceeee-----eecccc-cc--c-ccccccccc-ccCCcchhhhhccccCCcch--
Q psy5252         150 AFGDAGSPYLIGLLSEMFRHSLQLGASTLV-----ANAMLP-SS--L-APSLPFSSS-NSTSLPLVSSLDETAHRSDE--  217 (285)
Q Consensus       150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~-----~~~~~~-~~--~-~~~~~~~~~-~~~~~~~~~~~~~~~p~~~r--  217 (285)
                       ++..+|.++.|+++||+++|+........     ..+... ..  + .....+... .+..+...+...|..|.+..  
T Consensus       252 -~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~  330 (394)
T PRK03699        252 -MAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVASPKL  330 (394)
T ss_pred             -HHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHH
Confidence             45566788999999999998755442211     011111 11  1 111111111 11222223344555554321  


Q ss_pred             --------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy5252         218 --------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLLGS  259 (285)
Q Consensus       218 --------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (285)
                              .+|..++|.+.|++.|..|++.+++..+++.+++.+.++...
T Consensus       331 ~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (394)
T PRK03699        331 VNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLG  380 (394)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHH
Confidence                    256789999999999999999999887777777766555443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.70  E-value=6.7e-17  Score=136.06  Aligned_cols=240  Identities=13%  Similarity=0.017  Sum_probs=165.9

Q ss_pred             ccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCC--chHHHHHhhHHHHHHHHHHHHhccCCc
Q psy5252           7 ASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGA--WPWSLRVTPVLGACAVLLILFFMEDPE   84 (285)
Q Consensus         7 ~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~--wr~~f~i~~~~~~~~~~l~~~~~~~~~   84 (285)
                      |..+++.++.++.|||||++|.++|++. ..|+|..+...++..++...+.  ||....+..+..++..++..+..+|.+
T Consensus       119 GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p  197 (417)
T COG2223         119 GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVP  197 (417)
T ss_pred             cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence            3445788899999999999999999999 8899999999999999988743  999998888888887878888887765


Q ss_pred             CccccCccccccccHHHHHHHHhhhhhhHH-----------HHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhccc
Q psy5252          85 RGEAEGRVTEERTSFGEDIRALCKNHRETW-----------IFLNLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGD  153 (285)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  153 (285)
                      +.+.+.++..     ...++...+++..|+           ...+..|.+.+...+|+.++...+.......    .++.
T Consensus       198 ~~r~~~~~~~-----~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~----~~g~  268 (417)
T COG2223         198 EHRASVKPQL-----PAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFP----LIGA  268 (417)
T ss_pred             hhhccccccc-----hhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHH----HHHH
Confidence            5322221111     045666777777766           1235567788888888888877765544433    3444


Q ss_pred             cchhhhhHHHhHHhhhhhccccee-------eeeeccc-----ccc--ccc---cccccccccCCcchhhhhccccCCcc
Q psy5252         154 AGSPYLIGLLSEMFRHSLQLGAST-------LVANAML-----PSS--LAP---SLPFSSSNSTSLPLVSSLDETAHRSD  216 (285)
Q Consensus       154 ~~g~~~~G~l~d~~~~~~~~~~~~-------~~~~~~~-----~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~  216 (285)
                       +.++++|+++||+|.++.....+       .++.+..     ...  ...   ..++.....-++.++.++...+|++.
T Consensus       269 -l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~~  347 (417)
T COG2223         269 -LARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKET  347 (417)
T ss_pred             -HHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhhh
Confidence             45899999999999987665422       1111111     011  111   11111224556667777888887766


Q ss_pred             hh----------hhccccchhhhhhhhhhh-hHHHHHHHHHHHHHHHHHHHH
Q psy5252         217 EF----------LAHKSDEFLAHKSDEFLA-LQYALFITSFIEVLGGIFFLL  257 (285)
Q Consensus       217 r~----------l~~~~~p~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  257 (285)
                      ..          +|...-|...|...|..| ++.+|+....+.+++.+....
T Consensus       348 G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~  399 (417)
T COG2223         348 GAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWA  399 (417)
T ss_pred             hHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            51          555677889999999888 888888877777766665443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.69  E-value=4.9e-17  Score=142.34  Aligned_cols=245  Identities=9%  Similarity=-0.056  Sum_probs=147.9

Q ss_pred             ccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccC
Q psy5252           3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMED   82 (285)
Q Consensus         3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~   82 (285)
                      +...+...++..+++.|++|+|||+++.++...+.++|..+++.++..+.+...+||..|++.++..++..+ ..+..||
T Consensus       105 ~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l-~~~~~~e  183 (402)
T PRK11902        105 AFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGAL-TTLWAPE  183 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHH-HHHhcCC
Confidence            344556678889999999999999999999999999999999999999988542499999998887766543 3456677


Q ss_pred             CcCccccCccccccccHHHHHHHHhhhhhhHHHHHHH-----------HHHHHHHHHHHhcCCCCcchhHHHHHHHhhhc
Q psy5252          83 PERGEAEGRVTEERTSFGEDIRALCKNHRETWIFLNL-----------NWSIVADMTLYVVLPLRRSTAEAFQILISHAF  151 (285)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (285)
                      +++++.+++  +.+++..+.++.++|+|.++......           .+.+.+.....+.+++..+...+    ....+
T Consensus       184 ~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~----~~~~~  257 (402)
T PRK11902        184 PEVPARPPR--SLGEAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNK----TLGLA  257 (402)
T ss_pred             Ccccccccc--hhHHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHh----HHHHH
Confidence            654322111  11123456677888888775421110           12122222222333332222221    22234


Q ss_pred             cccchhhhhHHHhHHhhhhhcccceee--e---eec-----ccccc--ccccc----ccc-c-cccCCcchhhhhccccC
Q psy5252         152 GDAGSPYLIGLLSEMFRHSLQLGASTL--V---ANA-----MLPSS--LAPSL----PFS-S-SNSTSLPLVSSLDETAH  213 (285)
Q Consensus       152 g~~~g~~~~G~l~d~~~~~~~~~~~~~--~---~~~-----~~~~~--~~~~~----~~~-~-~~~~~~~~~~~~~~~~p  213 (285)
                      +.+++.+++|++.||+++++.......  .   +.+     ...+.  +....    ++. . ...........+.+..|
T Consensus       258 ~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  337 (402)
T PRK11902        258 ATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFS  337 (402)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            456677899999999998875543211  0   111     11111  11111    111 0 01122223455667777


Q ss_pred             Ccchh-------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy5252         214 RSDEF-------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIF  254 (285)
Q Consensus       214 ~~~r~-------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~  254 (285)
                      .+++.       ++...++.++|.+.|+.||+..|...+++.+++.++
T Consensus       338 ~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~  385 (402)
T PRK11902        338 ATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLAL  385 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence            66652       444555668999999999998888777766666444

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.69  E-value=7.2e-17  Score=140.82  Aligned_cols=241  Identities=12%  Similarity=0.077  Sum_probs=142.8

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      ++|++.+...+...+++.+++| |||+++++++..+.++|..+++.+++++.++..+||+.+.+.++..++..+......
T Consensus       106 l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  184 (393)
T PRK09705        106 LGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQS  184 (393)
T ss_pred             HHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4689999999999999999996 789999999999999999999999999998763599998777666554443332222


Q ss_pred             cCCcCccccCccccccccHHHHHHHHhhhhhhHH-----------HHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhh
Q psy5252          81 EDPERGEAEGRVTEERTSFGEDIRALCKNHRETW-----------IFLNLNWSIVADMTLYVVLPLRRSTAEAFQILISH  149 (285)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (285)
                      ++.++++.++     +.+    .+..++++..+.           ......|.+.+.. +++.++...+......     
T Consensus       185 ~~~~~~~~~~-----~~~----~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~-~~g~s~~~ag~~~~~~-----  249 (393)
T PRK09705        185 AREVASSHKT-----TTT----PVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYI-EIGASAQYSGSLLALM-----  249 (393)
T ss_pred             cCCCccccCC-----CcC----CcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhhhhHHHHHH-----
Confidence            2222111110     000    011233343322           1123345555543 3455555555444433     


Q ss_pred             hccccchhhhhHHHhHHhhhhhcccceee--eeec----ccccc--ccccccccccccCCcc-hhhhhccccC-Ccch--
Q psy5252         150 AFGDAGSPYLIGLLSEMFRHSLQLGASTL--VANA----MLPSS--LAPSLPFSSSNSTSLP-LVSSLDETAH-RSDE--  217 (285)
Q Consensus       150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~~~--~~~~----~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~p-~~~r--  217 (285)
                      .++.++|.++.|++.||+++++.......  .++.    ..+..  .........+.+...| ......+..+ ++++  
T Consensus       250 ~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~  329 (393)
T PRK09705        250 TLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGK  329 (393)
T ss_pred             HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHhccchHHHHHHHHHhhcCCHHHHHH
Confidence            36677788899999999998865443211  1111    11211  1111111111222222 3344456654 4554  


Q ss_pred             ---------hhhccccchhhhhhhhhhh-hHHHHHHHHHHHHHHHHHHHH
Q psy5252         218 ---------FLAHKSDEFLAHKSDEFLA-LQYALFITSFIEVLGGIFFLL  257 (285)
Q Consensus       218 ---------~l~~~~~p~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  257 (285)
                               .++..++|.+.|++.|+.| ++..+....+++++..++...
T Consensus       330 ~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  379 (393)
T PRK09705        330 LVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLR  379 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence                     1445789999999999887 777777766666655544433

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.69  E-value=3.2e-17  Score=143.00  Aligned_cols=231  Identities=15%  Similarity=0.049  Sum_probs=136.9

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      +|++.+...+...+++.|++|+++|++++++.+...++|..++|.+++.+.+..+ ||+.|++.+++.++..++.....|
T Consensus       101 ~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g-~~~~~~~~~~~~~i~~~~~~~~~~  179 (392)
T PRK10473        101 QGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP-WQSLFYTMAAMGILVLLLSLFILK  179 (392)
T ss_pred             HHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC-hHHHHHHHHHHHHHHHHHHHHHcC
Confidence            5778888888999999999999999999999999999999999999999888775 999999998887777766666777


Q ss_pred             CCcCccccCccccccccHHHHHHHHhhhhhhHHHHH-----------HHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhh
Q psy5252          82 DPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL-----------NLNWSIVADMTLYVVLPLRRSTAEAFQILISHA  150 (285)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (285)
                      |+++++.++     +.+..+..+..++++.++....           ...+.+.+.....+.++.+.+....     ...
T Consensus       180 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~  249 (392)
T PRK10473        180 ETRPARAPA-----ASSKPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMA-----LTA  249 (392)
T ss_pred             CCCCcccCC-----ccchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHH-----HHH
Confidence            754322111     1112233445566666543111           1111122222223333333222222     223


Q ss_pred             ccccchhhhhHHHhHHhhhhhcccceeee--ee---cccc--cc-ccccccccccccCCcchhhhhccccCCcch-----
Q psy5252         151 FGDAGSPYLIGLLSEMFRHSLQLGASTLV--AN---AMLP--SS-LAPSLPFSSSNSTSLPLVSSLDETAHRSDE-----  217 (285)
Q Consensus       151 ~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~---~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r-----  217 (285)
                      ++.+++.++.+++.||+++|+........  ++   ....  .. ......+...+...+.......+..|.++|     
T Consensus       250 ~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~~  329 (392)
T PRK10473        250 GVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGVAMSQALGPFSLRAGVAS  329 (392)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccCcccccHHH
Confidence            45566678999999999998755442211  00   0111  11 111111110011111112333455555555     


Q ss_pred             ---hhhccccchhhhhhhhhhhhHHHHHH
Q psy5252         218 ---FLAHKSDEFLAHKSDEFLALQYALFI  243 (285)
Q Consensus       218 ---~l~~~~~p~~~G~~~~~~~~~~~~~~  243 (285)
                         .++..+++.+.|.+.+..|+......
T Consensus       330 ~~~~~~~~~g~~~~~~l~~~~g~~~~~~~  358 (392)
T PRK10473        330 STLGIAQVCGSSLWIWLAAVLGISAWNML  358 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence               25567889999999998887644433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.69  E-value=2.3e-17  Score=141.94  Aligned_cols=227  Identities=17%  Similarity=0.145  Sum_probs=139.2

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      +|++.+...+...++++|++|+|+|++++++.+.+.++|..+++.+++.+.+..+ ||+.|++.++..++..++. ...+
T Consensus       102 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-~~~~~~~~~~~~~~~~~~~-~~~~  179 (365)
T TIGR00900       102 LAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG-IKWAIWVDAVGFAISALLI-VSVR  179 (365)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHH-Hhcc
Confidence            5788888999999999999999999999999999999999999999999999886 9999998877665554333 3333


Q ss_pred             CCcCccccCc--cccccccHHHHHHHHhhhhhhHHHHH-----------HH-HHHHHHHHHHHhcCCCCcchhHHHHHHH
Q psy5252          82 DPERGEAEGR--VTEERTSFGEDIRALCKNHRETWIFL-----------NL-NWSIVADMTLYVVLPLRRSTAEAFQILI  147 (285)
Q Consensus        82 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (285)
                      ++++++.+++  +++..++..+.++..+++|.++....           .. .+.|.+....++.++.+.+....     
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  254 (365)
T TIGR00900       180 IPELAASEIQALSNAVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLA-----  254 (365)
T ss_pred             cccCCCccccccchhHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHH-----
Confidence            2222111111  11112234455677778877654211           11 22333322223444333333222     


Q ss_pred             hhhccccchhhhhHHHhHHhhhhhcccceeee-------eecccccc--c-cccccccccc-cCCcchhhhhccccCCcc
Q psy5252         148 SHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV-------ANAMLPSS--L-APSLPFSSSN-STSLPLVSSLDETAHRSD  216 (285)
Q Consensus       148 ~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~-------~~~~~~~~--~-~~~~~~~~~~-~~~~~~~~~~~~~~p~~~  216 (285)
                      ...++.+++.++.+++.||.++++........       ..+...+.  . ....+...+. .......+.+.|.+|+++
T Consensus       255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  334 (365)
T TIGR00900       255 AFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL  334 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence            22355666778899999999988655432111       11111112  1 1111222222 233445678889999988


Q ss_pred             hh-----------hhccccchhhhhhhhhh
Q psy5252         217 EF-----------LAHKSDEFLAHKSDEFL  235 (285)
Q Consensus       217 r~-----------l~~~~~p~~~G~~~~~~  235 (285)
                      |.           ++..++|.+.|.+.|+.
T Consensus       335 ~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~  364 (365)
T TIGR00900       335 LGRVFGAQFSLSHAAWPLGLILAGPLADHL  364 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            72           45577888888887754

>KOG2533|consensus

Probab=99.68  E-value=6.2e-17  Score=142.83  Aligned_cols=162  Identities=15%  Similarity=0.204  Sum_probs=116.3

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh------ccCCchHHHHHhhHHHHHHHH
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS------VMGAWPWSLRVTPVLGACAVL   74 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~------~~g~wr~~f~i~~~~~~~~~~   74 (285)
                      +.|+.++..+|+...+++.||.++||++.+|++++..++|.++|.+++..+..      .. ||||.|++.|+++++..+
T Consensus       143 llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~-gW~~~FiI~G~i~~~~gi  221 (495)
T KOG2533|consen  143 LLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLA-GWRWLFIIEGVITLVLGI  221 (495)
T ss_pred             HHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcC-CceeehhHHHHHHHHHHh
Confidence            46999999999999999999999999999999999999999999999998743      34 599999999999999999


Q ss_pred             HHHHhccCCcCccc----cC----------c-c-ccccccHHHHHHHHhhhhhhHHH-----------HHHHHHHHHHHH
Q psy5252          75 LILFFMEDPERGEA----EG----------R-V-TEERTSFGEDIRALCKNHRETWI-----------FLNLNWSIVADM  127 (285)
Q Consensus        75 l~~~~~~~~~~~~~----~~----------~-~-~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~  127 (285)
                      +.++++|+.|.+..    ++          . + ..+++..+..+++.+++|.+|.+           +.+.+|.|.+..
T Consensus       222 ~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~  301 (495)
T KOG2533|consen  222 VVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLK  301 (495)
T ss_pred             eEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence            99999987654211    00          0 0 01111234567778888887752           224556665544


Q ss_pred             HHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhh
Q psy5252         128 TLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFR  168 (285)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~  168 (285)
                      ...+.+..+.+....     ..-++++++.++.|.++||++
T Consensus       302 ~~~~~s~~~a~~ls~-----~~~~~g~v~~i~ag~lsdr~~  337 (495)
T KOG2533|consen  302 SNGGYSELQANLLST-----PYDVGGIVGLILAGYLSDRLK  337 (495)
T ss_pred             cCCCcChHHhccccc-----hHHhhhHHHHHHHHHHHHHHh
Confidence            322233333333222     223667778889999999954

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.68  E-value=5.6e-17  Score=140.37  Aligned_cols=242  Identities=10%  Similarity=-0.026  Sum_probs=146.7

Q ss_pred             cccccccccchhHHHHhhcccCCchhHH--HHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHh
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQM--LAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFF   79 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~--~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~   79 (285)
                      +|.+.+...|...+++.|+.|+++|++.  .++...+.++|.++++++++.+.+.++ ||+.|++.++..++..++..++
T Consensus        97 ~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~-~~~~f~~~~~~~~~~~~~~~~~  175 (375)
T TIGR00899        97 LSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFG-FTVMFLTAALAFVLCGVLVWLF  175 (375)
T ss_pred             HHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHh
Confidence            3455566778888899999988777755  688888999999999999999998886 9999999998877777666666


Q ss_pred             ccCCcCccccCccccccccHHHHHHHHhhhhhhHHHH--H---------HHHHHHHHHHHHHhcCCCCcchhHHHHHHHh
Q psy5252          80 MEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIF--L---------NLNWSIVADMTLYVVLPLRRSTAEAFQILIS  148 (285)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (285)
                      +||+++++.+++   ++    .+.+..++++.++...  .         ...+.+.+.....+.++.+.+...+..    
T Consensus       176 ~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~----  244 (375)
T TIGR00899       176 LPSYPRGAPGAL---TR----LEVRGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTA----  244 (375)
T ss_pred             CCCcccCccccc---Cc----chhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHH----
Confidence            777554322111   11    1122344555443311  1         111223333333444444433332211    


Q ss_pred             hhccccchhhhhHHHhHHhhhhhcccceeee--ee---cccc-cc--cc-cccccccccc-CCcchhhhhccccCCcch-
Q psy5252         149 HAFGDAGSPYLIGLLSEMFRHSLQLGASTLV--AN---AMLP-SS--LA-PSLPFSSSNS-TSLPLVSSLDETAHRSDE-  217 (285)
Q Consensus       149 ~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~---~~~~-~~--~~-~~~~~~~~~~-~~~~~~~~~~~~~p~~~r-  217 (285)
                       ......+.++.|++.||+++|+........  ..   .... +.  +. ...+...+.+ .........+|..|++.+ 
T Consensus       245 -~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~  323 (375)
T TIGR00899       245 -AGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGRAGA  323 (375)
T ss_pred             -HHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhH
Confidence             123344567899999999988755432211  00   1111 11  11 1111111112 222335667788887654 


Q ss_pred             ---------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252         218 ---------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL  256 (285)
Q Consensus       218 ---------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (285)
                               .++..++|.+.|.+.|..|++..+...+++.+++.++..
T Consensus       324 ~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  371 (375)
T TIGR00899       324 ATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL  371 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence                     156689999999999999999999887777776666543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.68  E-value=2.5e-16  Score=137.88  Aligned_cols=246  Identities=10%  Similarity=0.061  Sum_probs=148.2

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      .|++.+ ..+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+ ||+.|++.+++.++..+...++.|
T Consensus       117 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  194 (408)
T PRK09874        117 LGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYG-LRPVFFITASVLFLCFLVTLFCIR  194 (408)
T ss_pred             HHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            455543 467788899999999999999999999999999999999999998886 999999999887777766666777


Q ss_pred             CCcCccccCccccccccHHHHHHHHhhhhhhHHHHH---HH---------HHHHHHHHHHHhcCCCCcchhHHHHHHHhh
Q psy5252          82 DPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL---NL---------NWSIVADMTLYVVLPLRRSTAEAFQILISH  149 (285)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (285)
                      |++++..+++    +.+.++ ....++++.+++...   ..         .+.+.+.. ....+....+...+... ...
T Consensus       195 ~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~-~~~  267 (408)
T PRK09874        195 ENFQPVSKKE----MLHMRE-VVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVR-ELAGNVSNIAFISGMIA-SVP  267 (408)
T ss_pred             cCcccccchh----hhHHHH-HHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccchHHHHHHHHHH-HHH
Confidence            6543221111    111222 233455665433111   00         11111111 11111111111222221 122


Q ss_pred             hccccchhhhhHHHhHHhhhhhcccceeee-----eeccc-ccc--c-cccccccccccCCcc-hhhhhccccCCcch--
Q psy5252         150 AFGDAGSPYLIGLLSEMFRHSLQLGASTLV-----ANAML-PSS--L-APSLPFSSSNSTSLP-LVSSLDETAHRSDE--  217 (285)
Q Consensus       150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~-----~~~~~-~~~--~-~~~~~~~~~~~~~~~-~~~~~~~~~p~~~r--  217 (285)
                      .++.+++.+..|+++||+++++........     +.... +..  + ....+...+.+...| ..+.+.+..|++.|  
T Consensus       268 ~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~  347 (408)
T PRK09874        268 GVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGR  347 (408)
T ss_pred             HHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccccee
Confidence            344556677889999999988765542211     00111 111  1 111112222222333 35566777887765  


Q ss_pred             ---------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252         218 ---------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL  256 (285)
Q Consensus       218 ---------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (285)
                               .++..+||.++|.+.|..||+..|++.+++.+++.+...
T Consensus       348 ~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~  395 (408)
T PRK09874        348 IFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSW  395 (408)
T ss_pred             eehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence                     267789999999999999999999988877777666544

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.68  E-value=7.1e-17  Score=140.35  Aligned_cols=241  Identities=12%  Similarity=0.125  Sum_probs=144.3

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      ++|++.+...+...+++.|++|+++|+++++++..+..+|..+++++++.+.+..+ ||+.|++.++..++..+...+.+
T Consensus       100 l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~~~l  178 (382)
T PRK10091        100 VSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFS-WRYTFLLIAVFNIAVLASIYFWV  178 (382)
T ss_pred             HHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhcc-HHHHHHHHHHHHHHHHHHHHHhC
Confidence            36788888888888999999999999999999999999999999999999998886 99999999988777666666667


Q ss_pred             cCCcCccccCccccccccHHHHHHHHhhhhhhHHHHH--------HH---HHHHHHHHHHHhcCCCCcchhHHHHHHHhh
Q psy5252          81 EDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL--------NL---NWSIVADMTLYVVLPLRRSTAEAFQILISH  149 (285)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (285)
                      ||.++++  ++      +.++.++ .++++..+....        ..   .+.+.+....++.++++.+....     ..
T Consensus       179 p~~~~~~--~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~-----~~  244 (382)
T PRK10091        179 PDIRDEA--KG------GLREQFH-FLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMM-----LV  244 (382)
T ss_pred             CCCCccc--cc------CHHHHHH-HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH-----HH
Confidence            7653221  10      1122233 345554443211        01   11122222223334333333222     22


Q ss_pred             hccccchhhhhHHHhHHhhhhhcccceee--eeec----ccccc---c-ccccccccc-ccCCcchhh-hhccccCCcch
Q psy5252         150 AFGDAGSPYLIGLLSEMFRHSLQLGASTL--VANA----MLPSS---L-APSLPFSSS-NSTSLPLVS-SLDETAHRSDE  217 (285)
Q Consensus       150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~~~--~~~~----~~~~~---~-~~~~~~~~~-~~~~~~~~~-~~~~~~p~~~r  217 (285)
                      .++.+++.++.|++.||+++++.......  .++.    ...+.   . ........+ .+...+... ...+..|++.+
T Consensus       245 ~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  324 (382)
T PRK10091        245 GLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELL  324 (382)
T ss_pred             HHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHH
Confidence            36667788899999999998865543221  1111    11111   1 111111111 122222222 33344444433


Q ss_pred             ---------hhhccccchhhhhhhhh-hhhHHHHHHHHHHHHHHHHHHH
Q psy5252         218 ---------FLAHKSDEFLAHKSDEF-LALQYALFITSFIEVLGGIFFL  256 (285)
Q Consensus       218 ---------~l~~~~~p~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~  256 (285)
                               .+|+.+||.+.|.+.|. .+|+..+...+++.++......
T Consensus       325 ~~~~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (382)
T PRK10091        325 GAAGGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLL  373 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence                     26779999999999996 5798888876655554444333

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.67  E-value=3.1e-17  Score=141.76  Aligned_cols=233  Identities=15%  Similarity=0.106  Sum_probs=142.9

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHH-HHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGY-IVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~-~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      +|++.+...+...++++|++|+|+|++++++.+.+.++|..+++ .++..+.+..+ ||+.|++.+++.++..++..++.
T Consensus        93 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  171 (379)
T TIGR00881        93 NGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYS-WHWVFIVPGIIAIIVSLICFLLL  171 (379)
T ss_pred             HHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHheee
Confidence            58888999999999999999999999999999999999999999 46677767665 99999998888777666666666


Q ss_pred             cCCcCcccc----C---cc-----c---cccccHHHHHHHHhhhhhhHHHH-----------HHHHHHHHHHHHHHhcCC
Q psy5252          81 EDPERGEAE----G---RV-----T---EERTSFGEDIRALCKNHRETWIF-----------LNLNWSIVADMTLYVVLP  134 (285)
Q Consensus        81 ~~~~~~~~~----~---~~-----~---~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~  134 (285)
                      +|+++++..    +   ++     +   ++........+..+++|.++...           ....|.+.+.....+.++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  251 (379)
T TIGR00881       172 RDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSK  251 (379)
T ss_pred             CCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence            665432110    0   00     0   00011223455667777765421           122233443333334444


Q ss_pred             CCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhccccee-----ee---eeccc-c--cc-c--cccccccc-ccc
Q psy5252         135 LRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGAST-----LV---ANAML-P--SS-L--APSLPFSS-SNS  199 (285)
Q Consensus       135 ~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~-----~~---~~~~~-~--~~-~--~~~~~~~~-~~~  199 (285)
                      .+.+.....     ..++.+++.++.|+++||..+++......     ..   ..+.. +  .. .  .....+.. ..+
T Consensus       252 ~~~~~~~~~-----~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  326 (379)
T TIGR00881       252 EKASWAFTL-----YELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYG  326 (379)
T ss_pred             HHHHHHHHH-----HHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhh
Confidence            333333332     23566778889999999875443222211     00   01111 1  11 1  11111111 122


Q ss_pred             CCcchhhhhccccCCcchh-----------hhccccchhhhhhhhhhhhHHH
Q psy5252         200 TSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLALQYA  240 (285)
Q Consensus       200 ~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~~~~~  240 (285)
                      ..........|.+|++.|.           ++..++|.+.|.+.|+.||+.+
T Consensus       327 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~  378 (379)
T TIGR00881       327 PQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA  378 (379)
T ss_pred             hhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence            2233356678999999881           5668999999999999888764

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.67  E-value=1.6e-16  Score=137.98  Aligned_cols=235  Identities=15%  Similarity=-0.000  Sum_probs=140.6

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh--------ccCCchHHHHHhhHHHHHH
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS--------VMGAWPWSLRVTPVLGACA   72 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~--------~~g~wr~~f~i~~~~~~~~   72 (285)
                      ++|++.+...+...++++|++|+|+|++.+++.+.+..+|..+++.++..+..        .++ ||+.|.+.+++.++.
T Consensus       105 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~-w~~~~~~~~~~~~~~  183 (394)
T TIGR00883       105 IQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWG-WRIPFLVSAVLVLIG  183 (394)
T ss_pred             HHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccc-hHHHHHHHHHHHHHH
Confidence            46888999999999999999999999999999999999999999998877643        454 999998877665554


Q ss_pred             HHHHHHhccCCcCccccCcc-ccccccHHHHHHHHhhhhh--hHHHH-----------HHHHHHHHHHHHHHhcCCCCcc
Q psy5252          73 VLLILFFMEDPERGEAEGRV-TEERTSFGEDIRALCKNHR--ETWIF-----------LNLNWSIVADMTLYVVLPLRRS  138 (285)
Q Consensus        73 ~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~  138 (285)
                      . ......+|+++.+.++++ ++++    +.++..++++.  ++...           ....+.+.+.....+.++.+.+
T Consensus       184 ~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  258 (394)
T TIGR00883       184 L-YLRRNLEETPVFEKAQEKHKKKR----GPIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSAL  258 (394)
T ss_pred             H-HHHHhcCCChhHHHHHhcccccc----CCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHH
Confidence            3 333455554432211111 1111    12333344433  32211           1122333333233334433333


Q ss_pred             hhHHHHHHHhhhccccchhhhhHHHhHHhhhhhccccee---eeee---c-cc---ccc-c-ccc-cccc-ccccCCcch
Q psy5252         139 TAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGAST---LVAN---A-ML---PSS-L-APS-LPFS-SSNSTSLPL  204 (285)
Q Consensus       139 ~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~---~~~~---~-~~---~~~-~-~~~-~~~~-~~~~~~~~~  204 (285)
                      ....     ...++..++.++.|+++||+++|+......   ....   . ..   ... . ... .... .......+.
T Consensus       259 ~~~~-----~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  333 (394)
T TIGR00883       259 LVLM-----LSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPM  333 (394)
T ss_pred             HHHH-----HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhH
Confidence            3222     223455666789999999999987554311   1111   0 11   111 1 111 1111 123445567


Q ss_pred             hhhhccccCCcchh------------hhccccchhhhhhhhhhh-hHHHHHHHHH
Q psy5252         205 VSSLDETAHRSDEF------------LAHKSDEFLAHKSDEFLA-LQYALFITSF  246 (285)
Q Consensus       205 ~~~~~~~~p~~~r~------------l~~~~~p~~~G~~~~~~~-~~~~~~~~~~  246 (285)
                      .+.+.|.+|+++|.            ++..++|.+.|++.|+.| ++..++....
T Consensus       334 ~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~  388 (394)
T TIGR00883       334 GSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAA  388 (394)
T ss_pred             HHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHH
Confidence            78899999998871            344688999999999988 7665554443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.66  E-value=2.5e-16  Score=137.45  Aligned_cols=245  Identities=7%  Similarity=-0.060  Sum_probs=139.7

Q ss_pred             cccccchhHHHHhhcccCCch--hHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccCC
Q psy5252           6 EASYSTIAPTIISDLFVKDLR--SQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDP   83 (285)
Q Consensus         6 ~~~~~~~~~~~i~~~~~~~~r--g~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~~   83 (285)
                      .+...|...+++.|+.++++|  +...++.+.+.++|.+++|++++.+.+++| ||..|++.++..++..++....+||.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~~~~~  197 (393)
T PRK15011        119 GSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFS-FTVMYLSAAVAFIVCGVMVWLFLPSM  197 (393)
T ss_pred             HHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence            345567778888888877655  345688999999999999999999998886 99999999988877776766777776


Q ss_pred             cCccccCccccc--cccHHHHHHHHhhhhhhHH-HHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhccccchhhhh
Q psy5252          84 ERGEAEGRVTEE--RTSFGEDIRALCKNHRETW-IFLNLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLI  160 (285)
Q Consensus        84 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  160 (285)
                      ++++.+.+++.+  ++..++.+.........+. ......|.|.+....++.++.+.+...+.     ..+..+++.++.
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~-----~~~~~i~~~~~~  272 (393)
T PRK15011        198 RKELPLATGTLEAPRRNRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGT-----AAGLEIPTMLIA  272 (393)
T ss_pred             CCCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-----HHHHHHHHHHHH
Confidence            433221111000  0000000000000000000 11122344444333445554444433221     123445667899


Q ss_pred             HHHhHHhhhhhcccceeee--eec---ccccc--ccc-ccccc-ccc-cCCcchhhhhccccCCcch----------hhh
Q psy5252         161 GLLSEMFRHSLQLGASTLV--ANA---MLPSS--LAP-SLPFS-SSN-STSLPLVSSLDETAHRSDE----------FLA  220 (285)
Q Consensus       161 G~l~d~~~~~~~~~~~~~~--~~~---~~~~~--~~~-~~~~~-~~~-~~~~~~~~~~~~~~p~~~r----------~l~  220 (285)
                      |+++||+++|+........  ..+   .....  ..+ ..+.. ... ...+......+|..|++.+          .+|
T Consensus       273 G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~lg  352 (393)
T PRK15011        273 GYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQAGSATTLYTNTSRVG  352 (393)
T ss_pred             HHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence            9999999998754432110  001   11111  111 11100 001 1122234556788887644          166


Q ss_pred             ccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252         221 HKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL  256 (285)
Q Consensus       221 ~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (285)
                      ..++|.+.|.+.|+.||+..+...+++.+++.+.+.
T Consensus       353 ~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~  388 (393)
T PRK15011        353 WIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLL  388 (393)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            789999999999999999988877766666555444

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.66  E-value=7e-16  Score=134.89  Aligned_cols=238  Identities=14%  Similarity=0.071  Sum_probs=135.1

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      +|++.+...|...+++.|++|+|+|++++|+.+...++|..+||.+++++. .++ ||+.|++.++..++..++...+.|
T Consensus       109 ~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g-~~~~f~~~~~~~~~~~i~~~~~~~  186 (400)
T PRK11646        109 SGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYD-FRLVCATGAVLFVLAAAFNAWLLP  186 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh-HHHHHHHHHHHHHHHHHHHHHhCC
Confidence            577777888999999999999999999999999999999999999999999 565 999999988877666555555555


Q ss_pred             CCcCccccCccccccccHHHHHHHHhhhhhhHHHHHH-----------HHHHHHHHHHHHhcCCCCcchhHHHHHHHhhh
Q psy5252          82 DPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFLN-----------LNWSIVADMTLYVVLPLRRSTAEAFQILISHA  150 (285)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (285)
                      |++.+  +     ++++.++.++..+++|.++.....           ..+.|.+.. ..+.++...+...+    ....
T Consensus       187 ~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~g~l~~----~~~~  254 (400)
T PRK11646        187 AYKLS--T-----VRTPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVN-DIAGSPSAVKWMYA----IEAC  254 (400)
T ss_pred             ccccc--c-----cchhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHH-hhcCCchHHHHHHH----HHHH
Confidence            43211  0     111234556677788876541110           011122211 11112222222222    1112


Q ss_pred             ccccchhhhhHHHhH-Hhhhhhcccceee--eeec---cccc-c--c-ccccccccccc-CCcchhhhhccccCCcchh-
Q psy5252         151 FGDAGSPYLIGLLSE-MFRHSLQLGASTL--VANA---MLPS-S--L-APSLPFSSSNS-TSLPLVSSLDETAHRSDEF-  218 (285)
Q Consensus       151 ~g~~~g~~~~G~l~d-~~~~~~~~~~~~~--~~~~---~~~~-~--~-~~~~~~~~~~~-~~~~~~~~~~~~~p~~~r~-  218 (285)
                      .+... ....+++.| |++.++.....+.  .++.   ...+ .  + .....+..+.+ ...+..+.+.|.+|+++|. 
T Consensus       255 ~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~  333 (400)
T PRK11646        255 LSLTL-LYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGS  333 (400)
T ss_pred             HHHHH-HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchh
Confidence            22222 223344444 4544432222111  1111   1111 1  1 11111222222 2334467788999998871 


Q ss_pred             ----------hhccccchhhhhhhhhhh----hHHHHHHHHHHHHHHHHH
Q psy5252         219 ----------LAHKSDEFLAHKSDEFLA----LQYALFITSFIEVLGGIF  254 (285)
Q Consensus       219 ----------l~~~~~p~~~G~~~~~~~----~~~~~~~~~~~~~~~~~~  254 (285)
                                ++..+||.+.|.+.|+.+    ....+...+++.+++.+.
T Consensus       334 ~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        334 YMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             hhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence                      567899999999999753    245555544444444433

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.65  E-value=4.2e-16  Score=136.27  Aligned_cols=240  Identities=13%  Similarity=-0.017  Sum_probs=140.3

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      ++|++.+...+...+++.|++|+|+|++++++...+..+|.++|+++++.+.+.++ ||+.+++..+..++..+.. ...
T Consensus       121 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-~~~~~~~~~~~~~~~~~~~-~~~  198 (399)
T PRK05122        121 LLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGG-LAGLGLLIMLLALLGLLLA-RPR  198 (399)
T ss_pred             HHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHHHH-hcC
Confidence            36889999999999999999999999999999999999999999999999999886 9999887766554333221 111


Q ss_pred             cCCcCccccCccccccccHHHHHHHHhhhhhhHHHH-----HHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhccccc
Q psy5252          81 EDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIF-----LNLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAG  155 (285)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  155 (285)
                      |+.+  + ++   +++.+.++.++..++........     ....|.+.+.. ..+.  ...+....     ...++.++
T Consensus       199 ~~~~--~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~-----~~~~~~~~  264 (399)
T PRK05122        199 PAVP--P-VK---GERLPFRRVLGRVWPYGMGLALASIGFGTIATFITLYYA-ARGW--DGAALALT-----LFGVAFVG  264 (399)
T ss_pred             CCCC--C-CC---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hccc--ccchHHHH-----HHHHHHHH
Confidence            2111  1 11   11112223333222222111111     11123333321 1121  12222222     22355566


Q ss_pred             hhhhhHHHhHHhhhhhcccceee--eeec---ccc-cc--ccc-cccccccccCCcc-hhhhhccccCCcchh-------
Q psy5252         156 SPYLIGLLSEMFRHSLQLGASTL--VANA---MLP-SS--LAP-SLPFSSSNSTSLP-LVSSLDETAHRSDEF-------  218 (285)
Q Consensus       156 g~~~~G~l~d~~~~~~~~~~~~~--~~~~---~~~-~~--~~~-~~~~~~~~~~~~~-~~~~~~~~~p~~~r~-------  218 (285)
                      +.++.|++.||+++++.......  ...+   ... +.  +.. ..+...+.+...| ......|.+|++.|.       
T Consensus       265 ~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~  344 (399)
T PRK05122        265 ARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYS  344 (399)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            78899999999998865543211  1111   111 11  111 1112222222222 345566888888871       


Q ss_pred             ----hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252         219 ----LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL  256 (285)
Q Consensus       219 ----l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (285)
                          ++..++|.+.|.+.|+.|++..++..+.+.+++.+...
T Consensus       345 ~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  386 (399)
T PRK05122        345 VFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTW  386 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence                45578899999999999999999877776666554433

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.65  E-value=3.1e-16  Score=141.10  Aligned_cols=252  Identities=14%  Similarity=0.064  Sum_probs=145.1

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh-----------------------ccCC
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS-----------------------VMGA   57 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~-----------------------~~g~   57 (285)
                      ++|++.+...+....+++|++|+++|++++++.+....+|..+++.++..+..                       .. +
T Consensus       124 l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  202 (502)
T TIGR00887       124 WLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDY-M  202 (502)
T ss_pred             HHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcc-c
Confidence            36899999999999999999999999999999999999999999998876542                       12 4


Q ss_pred             chHHHHHhhHHHHHHHHHHHHhccCCcCc----ccc-Cc-------------c-c-cc-------cccHHHHHHHHhhh-
Q psy5252          58 WPWSLRVTPVLGACAVLLILFFMEDPERG----EAE-GR-------------V-T-EE-------RTSFGEDIRALCKN-  109 (285)
Q Consensus        58 wr~~f~i~~~~~~~~~~l~~~~~~~~~~~----~~~-~~-------------~-~-~~-------~~~~~~~~~~~~~~-  109 (285)
                      ||+.|.+.++.+++.. +..+++||+|+.    .++ ++             + + ++       ++..+..+++++++ 
T Consensus       203 WR~~~~~~~ip~~i~~-~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  281 (502)
T TIGR00887       203 WRILIGFGAVPALLAL-YFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHF  281 (502)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCcccccchhccccchhhhHHHHHHHH
Confidence            9999988777766544 556788997652    111 00             0 0 00       00011234444432 


Q ss_pred             --hhh-H-HHHHHH-------------HHHHHHHHHHHhcCCCCcchh-------HHHHHHHhhhccccchhhhhHHHhH
Q psy5252         110 --HRE-T-WIFLNL-------------NWSIVADMTLYVVLPLRRSTA-------EAFQILISHAFGDAGSPYLIGLLSE  165 (285)
Q Consensus       110 --~~~-~-~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~g~~~g~~~~G~l~d  165 (285)
                        +.. . ......             .|.|.+. ...+.+....+..       ..........++.+++.++.++++|
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~d  360 (502)
T TIGR00887       282 FKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVIL-SAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVD  360 (502)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHccccccHHHH-HHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence              111 0 000000             1112221 2234433221111       1111122233455667788999999


Q ss_pred             Hhhhhhccccee-------eeeeccc---cc-c-ccccccc-c-ccccCCcchhhhhccccCCcchh-----------hh
Q psy5252         166 MFRHSLQLGAST-------LVANAML---PS-S-LAPSLPF-S-SSNSTSLPLVSSLDETAHRSDEF-----------LA  220 (285)
Q Consensus       166 ~~~~~~~~~~~~-------~~~~~~~---~~-~-~~~~~~~-~-~~~~~~~~~~~~~~~~~p~~~r~-----------l~  220 (285)
                      |+|||+......       ..+++..   .. . +....++ . ...+..+..+....|.+|++.|.           ++
T Consensus       361 r~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~  440 (502)
T TIGR00887       361 IIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAG  440 (502)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhH
Confidence            999997654321       1111111   11 1 1111111 1 12233344566778999999992           55


Q ss_pred             ccccchhhhhhhhh----------hhhHHHHHHHHHHHHHHHHHH
Q psy5252         221 HKSDEFLAHKSDEF----------LALQYALFITSFIEVLGGIFF  255 (285)
Q Consensus       221 ~~~~p~~~G~~~~~----------~~~~~~~~~~~~~~~~~~~~~  255 (285)
                      +.++|.+.|.+.|.          .++...+.+.+++.+++.+.+
T Consensus       441 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~  485 (502)
T TIGR00887       441 AIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT  485 (502)
T ss_pred             HHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh
Confidence            68999999998884          344566777776666665544

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK12382 putative transporter; Provisional

Probab=99.65  E-value=6.9e-16  Score=134.58  Aligned_cols=239  Identities=16%  Similarity=0.017  Sum_probs=142.1

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      ++|++.+...+...+++.|++|+|||++++++++.+.++|..+++++++.+.+.++ ||+.+.+..+..++.. ......
T Consensus       121 l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~~~~~~~~~~~~~-~~~~~~  198 (392)
T PRK12382        121 ILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFG-FAALALTTMVLPLLAW-AFNGTV  198 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH-HHHHhc
Confidence            36888888888899999999999999999999999999999999999999998886 9988776555443322 111222


Q ss_pred             cCCcCccccCccccccccHHHHHHHHhhhhhhHHHH------HHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhcccc
Q psy5252          81 EDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIF------LNLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDA  154 (285)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  154 (285)
                      ||.++   +++   ++.+.++..+..++ +......      ....|.+.+.. +.+.+  ..+.     ......++.+
T Consensus       199 ~~~~~---~~~---~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~--~~~~-----~~~~~~~~~~  263 (392)
T PRK12382        199 RKVPA---HAG---ERPSLWSVVGLIWK-PGLGLALQGVGFAVIGTFVSLYFA-SKGWA--MAGF-----TLTAFGGAFV  263 (392)
T ss_pred             cCCCC---Ccc---cCchHHHHHHHHHH-hHHHHHHHHHHHhHHHHHHHHHHH-hcCCc--hhHH-----HHHHHHHHHH
Confidence            22211   111   11123333333332 2221111      11222232221 11211  1111     1222335556


Q ss_pred             chhhhhHHHhHHhhhhhcccceeee--ee---ccc-ccc--cccc-ccccccccCCc-chhhhhccccCCcch-------
Q psy5252         155 GSPYLIGLLSEMFRHSLQLGASTLV--AN---AML-PSS--LAPS-LPFSSSNSTSL-PLVSSLDETAHRSDE-------  217 (285)
Q Consensus       155 ~g~~~~G~l~d~~~~~~~~~~~~~~--~~---~~~-~~~--~~~~-~~~~~~~~~~~-~~~~~~~~~~p~~~r-------  217 (285)
                      ++.++.|++.||+++++........  +.   ... ++.  .... .....+.+... ...+.+.|.+|+++|       
T Consensus       264 ~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  343 (392)
T PRK12382        264 LMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGY  343 (392)
T ss_pred             HHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            6788999999999988655432211  11   111 111  1111 11112222222 345667788998887       


Q ss_pred             ----hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252         218 ----FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL  256 (285)
Q Consensus       218 ----~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (285)
                          .+++.++|.+.|.+.|+.||+..+...+.+.+++.+...
T Consensus       344 ~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  386 (392)
T PRK12382        344 AAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTI  386 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence                166789999999999999999999888877777665544

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.64  E-value=4.3e-16  Score=136.55  Aligned_cols=165  Identities=16%  Similarity=0.098  Sum_probs=111.6

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      +|++.+...+...+++.|++|+++|.+.+++......+|..++|.+++.+.++.+ ||+.|++.++..++..+...+..|
T Consensus       111 ~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~-w~~~~~~~~~~~~~~~~~~~~~~~  189 (406)
T PRK15402        111 QGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP-WRGMFVLFAALAALSFFGLWRAMP  189 (406)
T ss_pred             HHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHHHHHHHHhCC
Confidence            5778888888999999999999999999999999999999999999999998875 999999988887776666656666


Q ss_pred             CCcCccccCccccccccHHHHHHHHhhhhhhHHHHHH--------HH---HHHHHHHHHHhcCCCCcchhHHHHHHHhhh
Q psy5252          82 DPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFLN--------LN---WSIVADMTLYVVLPLRRSTAEAFQILISHA  150 (285)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (285)
                      |++++..++   .+..+..+.++..+++|.++.....        ..   +.|.+....++.++.+.+...     ....
T Consensus       190 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~-----~~~~  261 (406)
T PRK15402        190 ETAGRVGEK---LSLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQ-----VPVF  261 (406)
T ss_pred             CCCcccccc---ccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHH-----HHHH
Confidence            654322111   1112345567778888877652211        11   123222222333332222221     1223


Q ss_pred             ccccchhhhhHHHhHHhhhhhcccc
Q psy5252         151 FGDAGSPYLIGLLSEMFRHSLQLGA  175 (285)
Q Consensus       151 ~g~~~g~~~~G~l~d~~~~~~~~~~  175 (285)
                      ++.+++.++.|+++||+++++....
T Consensus       262 ~~~~~g~~~~g~l~~r~~~~~~~~~  286 (406)
T PRK15402        262 GALIAGNLTLARLTSRRPLRSLIRM  286 (406)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            4566678899999999998875544

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.64  E-value=8.5e-16  Score=150.92  Aligned_cols=245  Identities=14%  Similarity=0.065  Sum_probs=149.9

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      ++|++.+.+.|+..+++.|++|+++|++++|+.+++.++|.++||++++++....+ |++.|+...+..++. ++..+++
T Consensus       117 l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~-~~~~~~~~~~~~~~~-~~~~~~~  194 (1140)
T PRK06814        117 LMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGN-FVILVALLMGIAVLG-WLASLFI  194 (1140)
T ss_pred             HHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHH-HHHHhhC
Confidence            47899999999999999999999999999999999999999999999999999885 999995554444443 3444556


Q ss_pred             cCCcCccccCccc-cccccHHHHHHHHhhhhhhHHHH-----------HHHHHHHHHHHHHHhcCCCCcchhHHHHHHHh
Q psy5252          81 EDPERGEAEGRVT-EERTSFGEDIRALCKNHRETWIF-----------LNLNWSIVADMTLYVVLPLRRSTAEAFQILIS  148 (285)
Q Consensus        81 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (285)
                      ++++......+.+ ....+....++.+.+++.++...           ....|.|.+....++.++...+...+     .
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~-----~  269 (1140)
T PRK06814        195 PKTGNAAPDLKIDRNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLA-----V  269 (1140)
T ss_pred             CCCCCCCCCCeeccchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHH-----H
Confidence            5543322111110 11112345677788888776522           12234444443334444444444333     3


Q ss_pred             hhccccchhhhhHHHhHHhhhhhccccee-------eeeecc-----------------c--ccc--ccc-ccccc-ccc
Q psy5252         149 HAFGDAGSPYLIGLLSEMFRHSLQLGAST-------LVANAM-----------------L--PSS--LAP-SLPFS-SSN  198 (285)
Q Consensus       149 ~~~g~~~g~~~~G~l~d~~~~~~~~~~~~-------~~~~~~-----------------~--~~~--~~~-~~~~~-~~~  198 (285)
                      ..+|.++|.++.|+++|+..+++......       +.+.+.                 .  ...  +.+ .++++ +..
T Consensus       270 ~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  349 (1140)
T PRK06814        270 FSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGG  349 (1140)
T ss_pred             HHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHH
Confidence            33677778889999988766554332211       001110                 0  111  111 11111 123


Q ss_pred             cCCcchhhhhccccCCcchh-----------hhccccchhhhhhhh-hhhhHHHHHHHHHHHHHHH
Q psy5252         199 STSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDE-FLALQYALFITSFIEVLGG  252 (285)
Q Consensus       199 ~~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~-~~~~~~~~~~~~~~~~~~~  252 (285)
                      ..+.+..+.+++.+|++.|.           ++..+++.+.|.+.+ ..++...+++.+++.++..
T Consensus       350 ~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~  415 (1140)
T PRK06814        350 LYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLIVA  415 (1140)
T ss_pred             HhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence            44455678899999999971           455788888888874 3456666554444433333

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.63  E-value=1.7e-16  Score=141.21  Aligned_cols=249  Identities=18%  Similarity=0.155  Sum_probs=144.7

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHH---HHhhhccCCchHHHHHhhHHHHHHHHHHH
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVG---STAFSVMGAWPWSLRVTPVLGACAVLLIL   77 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~---~~l~~~~g~wr~~f~i~~~~~~~~~~l~~   77 (285)
                      ++|++.+...+...++++|++|+++|++++++++.+.++|..+++.++   ..+....+ ||+.|++.++..++.. +..
T Consensus       136 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-w~~~f~~~~~~~~~~~-~~~  213 (481)
T TIGR00879       136 LLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLG-WRIPLGLQLIPAGLLF-LGL  213 (481)
T ss_pred             HHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCcc-HHHHHHHHHHHHHHHH-HHH
Confidence            468899999999999999999999999999999999999999999999   66656665 9999999666555444 445


Q ss_pred             HhccCCcCccc---cCcc-----------ccccccHHH------------------HHHHHhhh-----hhhHHHHH--H
Q psy5252          78 FFMEDPERGEA---EGRV-----------TEERTSFGE------------------DIRALCKN-----HRETWIFL--N  118 (285)
Q Consensus        78 ~~~~~~~~~~~---~~~~-----------~~~~~~~~~------------------~~~~~~~~-----~~~~~~~~--~  118 (285)
                      +++||+++...   +.++           ++++....+                  .++..++.     +...+...  .
T Consensus       214 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (481)
T TIGR00879       214 FFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQW  293 (481)
T ss_pred             hcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHH
Confidence            66676542100   0000           000000000                  00111111     11111100  0


Q ss_pred             ----------HHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceee-------eee
Q psy5252         119 ----------LNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTL-------VAN  181 (285)
Q Consensus       119 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~-------~~~  181 (285)
                                ..+.+. .....+.+....+....     ...++.+++.++.|+++||+++|+.......       ...
T Consensus       294 ~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  367 (481)
T TIGR00879       294 FQQFTGINAIMYYSPT-IFENAGVSTDHAFLVSI-----IVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLG  367 (481)
T ss_pred             HHHHhCCeehHHHHHH-HHHHcCCCchHHHHHHH-----HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence                      111121 12223333322222222     2234455677899999999999876544211       111


Q ss_pred             ---cc-cc------cc--ccccccc-c-ccccCCcchhhhhccccCCcchh-----------hhccccchhhhhhhhhhh
Q psy5252         182 ---AM-LP------SS--LAPSLPF-S-SSNSTSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLA  236 (285)
Q Consensus       182 ---~~-~~------~~--~~~~~~~-~-~~~~~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~  236 (285)
                         .. ..      ..  +....++ . .+.+..........|.+|++.|.           +++.++|.+.|.+.++.+
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~  447 (481)
T TIGR00879       368 ILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIG  447 (481)
T ss_pred             HHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               00 01      11  1111111 1 11233333456678999998871           667899999999999889


Q ss_pred             hHHHHHHHHHHHHHHHHHHHH
Q psy5252         237 LQYALFITSFIEVLGGIFFLL  257 (285)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~  257 (285)
                      ++..|+..+++.+++.++...
T Consensus       448 ~~~~f~~~~~~~~~~~i~~~~  468 (481)
T TIGR00879       448 VGGVFIFFGGLNVLGLIFVYF  468 (481)
T ss_pred             ccceehhHHHHHHHHHHHHhe
Confidence            998888777777666665543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.63  E-value=6.4e-16  Score=138.25  Aligned_cols=83  Identities=23%  Similarity=0.456  Sum_probs=69.6

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhh--------hccCCchHHHHHhhHHHHHH
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAF--------SVMGAWPWSLRVTPVLGACA   72 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~--------~~~g~wr~~f~i~~~~~~~~   72 (285)
                      ++|++.|...|...++++|++|+++|++++++.+.+..+|..+++.++..+.        +.++ ||+.|++.+++.++.
T Consensus       129 l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~  207 (479)
T PRK10077        129 IGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDG-WRYMFASEAIPALLF  207 (479)
T ss_pred             HHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCC-hHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999999999988876654        2354 999999988877776


Q ss_pred             HHHHHHhccCCcC
Q psy5252          73 VLLILFFMEDPER   85 (285)
Q Consensus        73 ~~l~~~~~~~~~~   85 (285)
                      . +..+++||+++
T Consensus       208 ~-~~~~~l~~s~~  219 (479)
T PRK10077        208 L-MLLYFVPETPR  219 (479)
T ss_pred             H-HHHHcCCCCcH
Confidence            5 44567787664

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.62  E-value=4.6e-16  Score=135.85  Aligned_cols=237  Identities=14%  Similarity=0.083  Sum_probs=139.7

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC-CchHHHHHhhHHHHHHHHHHHHh
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG-AWPWSLRVTPVLGACAVLLILFF   79 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g-~wr~~f~i~~~~~~~~~~l~~~~   79 (285)
                      ++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+ +||+.|++.++..++.. +....
T Consensus       109 l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~-~~~~~  187 (405)
T TIGR00891       109 VIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL-WLRKN  187 (405)
T ss_pred             HHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH-HHHHh
Confidence            36888999999999999999999999999999999999999999999999987653 49999988766554443 44455


Q ss_pred             ccCCcCccccCccc-ccc----------ccHHHHHH----HHh----hhhh-hHH---HHH--------HHHHHHHHHHH
Q psy5252          80 MEDPERGEAEGRVT-EER----------TSFGEDIR----ALC----KNHR-ETW---IFL--------NLNWSIVADMT  128 (285)
Q Consensus        80 ~~~~~~~~~~~~~~-~~~----------~~~~~~~~----~~~----~~~~-~~~---~~~--------~~~~~~~~~~~  128 (285)
                      .||+++.+.+++++ +.+          ...++..+    ...    +++. +..   ...        ...+.+.+...
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (405)
T TIGR00891       188 IPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKA  267 (405)
T ss_pred             CCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            66654321111100 000          00000000    000    0000 111   000        11122333333


Q ss_pred             HHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeeee------ecccccc---ccccccc--ccc
Q psy5252         129 LYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLVA------NAMLPSS---LAPSLPF--SSS  197 (285)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~~------~~~~~~~---~~~~~~~--~~~  197 (285)
                      ..+.++.+.+....     ...++.+++.++.|+++||+++|+.........      .+.....   +.....+  ...
T Consensus       268 ~~g~s~~~~~~~~~-----~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (405)
T TIGR00891       268 DLGLSPHTVANIVV-----FSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLV  342 (405)
T ss_pred             HhCCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            33444433333322     223566778889999999999987654422111      0111111   1111111  112


Q ss_pred             ccCCcchhhhhccccCCcchh-----------hhccccchhhhhhhhhhh-hHHHHHH
Q psy5252         198 NSTSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLA-LQYALFI  243 (285)
Q Consensus       198 ~~~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~-~~~~~~~  243 (285)
                      .+........++|.+|++.|.           ++..++|.+.|.+.|+.| |+.++..
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       343 QGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             ccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            334445567888999999882           566899999999999988 7776654

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.61  E-value=2.7e-15  Score=130.88  Aligned_cols=247  Identities=17%  Similarity=0.093  Sum_probs=142.6

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      ++|++.+...|+..+++.|++|+|||++++|+.+...++|.++||.+++++.+. . |+..+.+.+...++.. +..+.+
T Consensus        97 l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~-~~~~~~i~~~~~~~~~-~~~~~l  173 (393)
T PRK11195         97 LVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-H-AEAALAVCALIYLLAA-LFNLFI  173 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHH-HHHhcC
Confidence            478999999999999999999999999999999999999999999999999985 3 8888877765544433 444566


Q ss_pred             cCCcCccccCcccc--ccccHHHHHHHHhhhhhhHHHHH--HHHHH---------HHHHHHHHhcCCCCcchhHHHHHHH
Q psy5252          81 EDPERGEAEGRVTE--ERTSFGEDIRALCKNHRETWIFL--NLNWS---------IVADMTLYVVLPLRRSTAEAFQILI  147 (285)
Q Consensus        81 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~  147 (285)
                      ||+++++++.+.+.  ...+.++..+.++++|.+.....  ...+.         +.+....++.++.+.|...     .
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~-----~  248 (393)
T PRK11195        174 PRLGARRPGQSWNPIALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQ-----A  248 (393)
T ss_pred             CCCcccccccCCCHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHH-----H
Confidence            76543221111111  01223344566777776543111  11111         1111122344444433333     2


Q ss_pred             hhhccccchhhhhHHHhHHhhhhhcccceeee----eecccccc-c--cc-ccccccc-ccCCcchhhhhccccCCcc-h
Q psy5252         148 SHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV----ANAMLPSS-L--AP-SLPFSSS-NSTSLPLVSSLDETAHRSD-E  217 (285)
Q Consensus       148 ~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~----~~~~~~~~-~--~~-~~~~~~~-~~~~~~~~~~~~~~~p~~~-r  217 (285)
                      ...+|.++|.++.+++.||.++++........    ..+...+. +  .. ......+ .....|..+.++|..|++. +
T Consensus       249 ~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~  328 (393)
T PRK11195        249 VVAIGIAVGAGAAARLVTLETVLRVLPAGILMGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGA  328 (393)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccc
Confidence            33467777777888888876665433222111    01111111 1  11 1112222 3334566777888766654 3


Q ss_pred             -----------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252         218 -----------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL  256 (285)
Q Consensus       218 -----------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (285)
                                 .++..++..+.+.+ +..|.+..+.+.....+++..+..
T Consensus       329 g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  377 (393)
T PRK11195        329 GHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMAL  377 (393)
T ss_pred             hhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHH
Confidence                       14446677777744 667877777766555555444433

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.60  E-value=2.5e-15  Score=130.40  Aligned_cols=165  Identities=14%  Similarity=0.140  Sum_probs=114.4

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      ++|++.+...+...+++.|++|+|+|++++++.+....+|..+++.+++.+.+..+ ||+.|++.++..++..+...+..
T Consensus       102 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  180 (385)
T TIGR00710       102 VQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS-WHAIFAFLSLAGILLSALIFFIL  180 (385)
T ss_pred             HHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHhC
Confidence            36788888999999999999999999999999999999999999999999999886 99999998888777766666666


Q ss_pred             cCCcCccccCccccccccHHHHHHHHhhhhhhHHHHH-----------HHHHHHHHHHHHHhcCCCCcchhHHHHHHHhh
Q psy5252          81 EDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL-----------NLNWSIVADMTLYVVLPLRRSTAEAFQILISH  149 (285)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (285)
                      ||+++++.++    +.++..+.++..+++|.++....           ...+.+.+....++.++.+.+....     ..
T Consensus       181 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~-----~~  251 (385)
T TIGR00710       181 PETLPYEARI----QISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFA-----LN  251 (385)
T ss_pred             CCCCCCcccC----CHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHH-----HH
Confidence            6654332211    11122345666777877654211           1111222222233444333333322     22


Q ss_pred             hccccchhhhhHHHhHHhhhhhcccc
Q psy5252         150 AFGDAGSPYLIGLLSEMFRHSLQLGA  175 (285)
Q Consensus       150 ~~g~~~g~~~~G~l~d~~~~~~~~~~  175 (285)
                      .++.+++.++.|+++||+++|+....
T Consensus       252 ~~~~~~~~~~~g~l~~~~~~~~~~~~  277 (385)
T TIGR00710       252 IIAMIFGGFLNGRFIKKWGAKSLLRM  277 (385)
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            35667778899999999999876554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.60  E-value=1.8e-15  Score=127.63  Aligned_cols=236  Identities=11%  Similarity=0.020  Sum_probs=142.5

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhcc---------------CCchHHHHHh
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVM---------------GAWPWSLRVT   65 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~---------------g~wr~~f~i~   65 (285)
                      +.|.|.+...+.++.++++..++|++++.+++.+....+|..++|.+++.+....               .+||++|++.
T Consensus        19 ~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~i   98 (310)
T TIGR01272        19 VLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLL   98 (310)
T ss_pred             HHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHH
Confidence            3688999999999999999999999999999999999999999999999887321               1499999977


Q ss_pred             hHHHHHHHHHHH-HhccCCcCccccCccccccccHHHHHHHHhhhhhhHHHH-----------HHHHHHHHHHHHH--Hh
Q psy5252          66 PVLGACAVLLIL-FFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIF-----------LNLNWSIVADMTL--YV  131 (285)
Q Consensus        66 ~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~--~~  131 (285)
                      +.+..+..+++. ...||.++++.++. ++++ +  ...+..+++|.+++..           ....|.+.|....  ++
T Consensus        99 a~~~~~~~i~~~~~~~p~~~~~~~~~~-~~~~-~--~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g  174 (310)
T TIGR01272        99 AGALAVLAIIFAFLPLPELQEADVARV-SSGD-T--TQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALG  174 (310)
T ss_pred             HHHHHHHHHHHHHccCCCCCccccccc-cccc-c--cchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            666555443332 22333222111110 0111 0  0112245555554411           2344556554321  24


Q ss_pred             cCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee-----eeccccc-c--ccccccccccccCCcc
Q psy5252         132 VLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV-----ANAMLPS-S--LAPSLPFSSSNSTSLP  203 (285)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~-----~~~~~~~-~--~~~~~~~~~~~~~~~~  203 (285)
                      .+++..+...+..     ..+..+|+++++++.||+++++..+.....     +.+...+ .  ......+..+.+...|
T Consensus       175 ~s~~~a~~~~s~~-----~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~l~g~~~s~i~P  249 (310)
T TIGR01272       175 LPEDQAAHFTAYT-----WGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAMWFVLALGLFNSIMFP  249 (310)
T ss_pred             CCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence            4444444444433     377788999999999999988766542211     0011111 1  1111112222233333


Q ss_pred             -hhhhhccccCCcch---------hhhccccchhhhhhhhhhhhHHHHHHHH
Q psy5252         204 -LVSSLDETAHRSDE---------FLAHKSDEFLAHKSDEFLALQYALFITS  245 (285)
Q Consensus       204 -~~~~~~~~~p~~~r---------~l~~~~~p~~~G~~~~~~~~~~~~~~~~  245 (285)
                       ..+...+..|++..         .+|+++.|.+.|.+.|+.|.+.++++..
T Consensus       250 ~~~s~a~~~~~~~~~~asai~~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~  301 (310)
T TIGR01272       250 TIFSLALNALGRHTSQGSGILCLAIVGGAIVPLLQGSLADCLGIQLAFALPV  301 (310)
T ss_pred             HHHHHHHhhhhhhhhhhHHHHHHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence             34555566665432         2677999999999999999988887433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.60  E-value=3.2e-15  Score=129.60  Aligned_cols=166  Identities=17%  Similarity=0.141  Sum_probs=113.2

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      +|++.+...+...+++.|++|+|+|++++++.+.+..+|..+++.+++.+.+..+ ||+.|++.+++.++..++..+..|
T Consensus        89 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  167 (377)
T PRK11102         89 HGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS-WHAIFWVLALAAILAAALVFFFIP  167 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHHHHHHHhCC
Confidence            5777888888999999999999999999999999999999999999999999886 999999988888777666666777


Q ss_pred             CCcCccccCccccccccHHHHHHHHhhhhhhHHHHH-----------HHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhh
Q psy5252          82 DPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL-----------NLNWSIVADMTLYVVLPLRRSTAEAFQILISHA  150 (285)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (285)
                      |+++++++++  .+.++..+.++..+++|.++....           ...+.+.+....++.++.+.+....     ...
T Consensus       168 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~-----~~~  240 (377)
T PRK11102        168 ETLPKERRQP--FHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFA-----LNI  240 (377)
T ss_pred             ccCcccccCC--CChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHH-----HHH
Confidence            6543321111  111112344556677776554211           1112222223334444444333332     233


Q ss_pred             ccccchhhhhHHHhHHhhhhhcccc
Q psy5252         151 FGDAGSPYLIGLLSEMFRHSLQLGA  175 (285)
Q Consensus       151 ~g~~~g~~~~G~l~d~~~~~~~~~~  175 (285)
                      ++.+++.++.|++.||+++|+....
T Consensus       241 ~~~~~~~~~~g~l~~r~g~~~~~~~  265 (377)
T PRK11102        241 VFLFVMTIINSRFVRRVGALNMLRF  265 (377)
T ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            5566678899999999999876554

>PRK10504 putative transporter; Provisional

Probab=99.59  E-value=1.7e-15  Score=135.22  Aligned_cols=82  Identities=16%  Similarity=0.357  Sum_probs=71.1

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      ++|++.+...|...+++.|++|+++|++++++.....++|..++|.+++.+.++.+ ||+.|++......+..++.....
T Consensus       107 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~g-w~~~f~~~~~~~~l~~~~~~~~~  185 (471)
T PRK10504        107 LQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYAS-WHWIFLINIPVGIIGAIATLMLM  185 (471)
T ss_pred             HHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHHhC
Confidence            36888999999999999999999999999999999999999999999999999886 99999998877666665555555


Q ss_pred             cCC
Q psy5252          81 EDP   83 (285)
Q Consensus        81 ~~~   83 (285)
                      |+.
T Consensus       186 ~~~  188 (471)
T PRK10504        186 PNY  188 (471)
T ss_pred             CCc
Confidence            543

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.58  E-value=2.2e-15  Score=132.71  Aligned_cols=230  Identities=10%  Similarity=-0.015  Sum_probs=128.1

Q ss_pred             CchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccCCcCccccCc--cccccccHHH
Q psy5252          24 DLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDPERGEAEGR--VTEERTSFGE  101 (285)
Q Consensus        24 ~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~  101 (285)
                      +++++.+|......++|..+++++++.+.+. + |++.|++.+++.++..++.++..+|++++...++  .+++++...+
T Consensus       137 ~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (420)
T PRK09528        137 RRSGFEYGRARMWGSLGWALCAFIAGILFNI-N-PQINFWLGSGSALILLVLLFFAKPDAPSTAKVANALGANASAVSLK  214 (420)
T ss_pred             hhccccchhhHHhhhHHHHHHHHHHHHHHhc-C-chHhHHHHHHHHHHHHHHHhcccccccchhhhccchhcccccccHH
Confidence            4567788999999999999999999999874 4 9999998888877666555444444333211111  0111111234


Q ss_pred             HHHHHhhhhhhHHHHH-----------HHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhh
Q psy5252         102 DIRALCKNHRETWIFL-----------NLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHS  170 (285)
Q Consensus       102 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~  170 (285)
                      ..+..+|+|.+++...           ...+.+.+....+ .+.+......+....+. .++..++.++.|+++||+++|
T Consensus       215 ~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~-~~~~~~~~~~~g~l~dr~g~~  292 (420)
T PRK09528        215 DALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFF-ATPEQGTRVFGYLNSFQ-VFLEALIMFFAPFIINRIGAK  292 (420)
T ss_pred             HHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcc
Confidence            4556778887654111           1112233322211 11111111222222222 244456678999999999998


Q ss_pred             hcccceeee--e---ecccc-cc--ccc-cccccccccC-CcchhhhhccccCCcchh------------hhccccchhh
Q psy5252         171 LQLGASTLV--A---NAMLP-SS--LAP-SLPFSSSNST-SLPLVSSLDETAHRSDEF------------LAHKSDEFLA  228 (285)
Q Consensus       171 ~~~~~~~~~--~---~~~~~-~~--~~~-~~~~~~~~~~-~~~~~~~~~~~~p~~~r~------------l~~~~~p~~~  228 (285)
                      +......+.  +   ..... +.  +.. ..+....... .......+.|..|++.|.            ++..++|.+.
T Consensus       293 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~  372 (420)
T PRK09528        293 NALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLA  372 (420)
T ss_pred             hhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHH
Confidence            765432211  0   01111 11  111 1111111111 122235567778888761            4457999999


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy5252         229 HKSDEFLALQYALFITSFIEVLGGIFFLL  257 (285)
Q Consensus       229 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (285)
                      |++.|..||+..|...+++.++..++...
T Consensus       373 G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  401 (420)
T PRK09528        373 GNLYDSIGFQGTYLILGGIVLLFTLISVF  401 (420)
T ss_pred             HHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998877776666554443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.58  E-value=1.2e-15  Score=136.48  Aligned_cols=247  Identities=15%  Similarity=0.081  Sum_probs=153.4

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      .|++.+...|+-++++.+.+|+|+...++++.+...++..++||.++|.+....| -.+.|.+.++..++.... ....+
T Consensus       113 ~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G-~~~~f~inalsfl~~i~~-l~~~~  190 (524)
T PF05977_consen  113 LGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFG-AAAAFLINALSFLISILA-LLRWK  190 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHcc
Confidence            5788889999999999999999999999999999999999999999999999886 888998887765554433 33333


Q ss_pred             CCcCccccCccccccccHHHHHHHHhhhhhhHHHHH---------HHHH--HHHHHHHHHhcCCCCcchhHHHHHHHhhh
Q psy5252          82 DPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL---------NLNW--SIVADMTLYVVLPLRRSTAEAFQILISHA  150 (285)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (285)
                      .+.+++ +..++.-.++.++.++...++|.+.....         ...|  .|.+.....+.++...|...+..     .
T Consensus       191 ~~~~~~-~~~~e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~-----g  264 (524)
T PF05977_consen  191 PPPPPS-SLPRERFFSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAF-----G  264 (524)
T ss_pred             cccccc-ccchhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHH-----H
Confidence            322211 11112223456677887777776543111         1111  12222222333433444433322     3


Q ss_pred             ccccchhhhhHHHhHHhhhhhcccceeee-----eecccccc--c-ccccccc-cc-ccCCcchhhhhccccCCcchh--
Q psy5252         151 FGDAGSPYLIGLLSEMFRHSLQLGASTLV-----ANAMLPSS--L-APSLPFS-SS-NSTSLPLVSSLDETAHRSDEF--  218 (285)
Q Consensus       151 ~g~~~g~~~~G~l~d~~~~~~~~~~~~~~-----~~~~~~~~--~-~~~~~~~-~~-~~~~~~~~~~~~~~~p~~~r~--  218 (285)
                      +|.++|.++.+++.+++++++......+.     +.+.+...  + ...+++. .+ ...+.+.++.+++.+|+++|.  
T Consensus       265 vGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv  344 (524)
T PF05977_consen  265 VGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRV  344 (524)
T ss_pred             HHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHH
Confidence            66676666777777666655443332211     11112111  1 1111111 11 223344567888999999972  


Q ss_pred             ---------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252         219 ---------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL  256 (285)
Q Consensus       219 ---------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (285)
                               .+..+|..+.|.+.|+.|.+.++.+.++..+++.++..
T Consensus       345 ~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  345 FSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence                     33489999999999999999998877776666665544

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.56  E-value=1.2e-14  Score=127.43  Aligned_cols=237  Identities=13%  Similarity=-0.042  Sum_probs=139.8

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhh-----hccC------------CchHHHHH
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAF-----SVMG------------AWPWSLRV   64 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~-----~~~g------------~wr~~f~i   64 (285)
                      .|++ +..++.....+++|+|+||||+++|+.....++|..+++++...+.     ..++            +||..+++
T Consensus       138 ~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~  216 (462)
T PRK15034        138 CGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWI  216 (462)
T ss_pred             HHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHH
Confidence            5776 6688999999999999999999999998777778777766665543     2121            27888888


Q ss_pred             hhHHHHHHHHHHHHhccCCcCccccCccccccccHHHHHHHHhhhhhhHHHH-----------HHHHHHHHHHHHHHhcC
Q psy5252          65 TPVLGACAVLLILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIF-----------LNLNWSIVADMTLYVVL  133 (285)
Q Consensus        65 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~  133 (285)
                      ..++.++..++.+++.+++++.         +.+ .++.+..+|+|..|++.           .+..|.|.+...  ..+
T Consensus       217 ~~~~~iv~~i~~~~~~~~~~~~---------~~~-~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~--~~~  284 (462)
T PRK15034        217 WVPLLAIATIAAWSGMNDIASS---------RAS-IADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKT--QFP  284 (462)
T ss_pred             HHHHHHHHHHHHHHhCCCcccc---------ccC-HHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH--HcC
Confidence            8887777776666665543321         111 23455678888776511           112234443322  221


Q ss_pred             CCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee---ee----ccccc----c--c-ccc--cccccc
Q psy5252         134 PLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV---AN----AMLPS----S--L-APS--LPFSSS  197 (285)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~---~~----~~~~~----~--~-~~~--~~~~~~  197 (285)
                      .  .+...  ...+.. +...+..+++|+++||+|+++.....+..   ..    ...+.    .  . ...  .++...
T Consensus       285 ~--~~~l~--~~~l~~-l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~  359 (462)
T PRK15034        285 D--VNILR--LAFFGP-FIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTA  359 (462)
T ss_pred             h--HHHHH--HHHHHH-HHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence            1  11111  112222 33445578999999999999766553311   10    11221    1  1 111  111222


Q ss_pred             ccCCcchhhhhccccCC------c-------c-------h------------hhhccccchhhhhhhhhhh-hHHHHHHH
Q psy5252         198 NSTSLPLVSSLDETAHR------S-------D-------E------------FLAHKSDEFLAHKSDEFLA-LQYALFIT  244 (285)
Q Consensus       198 ~~~~~~~~~~~~~~~p~------~-------~-------r------------~l~~~~~p~~~G~~~~~~~-~~~~~~~~  244 (285)
                      +..++.++-++.+.+|+      +       +       +            .+|+.+-|.+.|...+..| +..+|+..
T Consensus       360 G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~  439 (462)
T PRK15034        360 GLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVF  439 (462)
T ss_pred             cccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHH
Confidence            44556666677777763      1       0       1            1556788888888888766 78888877


Q ss_pred             HHHHHHHHHHHH
Q psy5252         245 SFIEVLGGIFFL  256 (285)
Q Consensus       245 ~~~~~~~~~~~~  256 (285)
                      .+.++++.++.+
T Consensus       440 ~~~~~~~~~~~w  451 (462)
T PRK15034        440 LIFYIVCVLLTW  451 (462)
T ss_pred             HHHHHHHHHHHH
Confidence            666666555433

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.55  E-value=1.9e-14  Score=126.43  Aligned_cols=110  Identities=15%  Similarity=0.212  Sum_probs=85.5

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      ++|++.+...+....++.|++|+++|++++++++.+.++|..+||.+++.+.++.+ ||+.|++.++..++..++..+.+
T Consensus       113 l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g-w~~~f~~~~~~~~i~~~~~~~~l  191 (413)
T PRK15403        113 IQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH-WKVLFAIIAVMGLIAFVGLLLAM  191 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHhC
Confidence            36788877677778899999999999999999999999999999999999998876 99999999988877766656667


Q ss_pred             cCCcCccccCccccccccHHHHHHHHhhhhhhHH
Q psy5252          81 EDPERGEAEGRVTEERTSFGEDIRALCKNHRETW  114 (285)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (285)
                      ||+++++.++   .+..+..+.++..++||.++.
T Consensus       192 p~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~  222 (413)
T PRK15403        192 PETVKRGAVP---FSAKSVLRDFRNVFRNRLFLT  222 (413)
T ss_pred             CCCccccCCC---CChHHHHHHHHHHHcCHHHHH
Confidence            7764322111   111223456777888988875

>PRK10054 putative transporter; Provisional

Probab=99.55  E-value=1.3e-14  Score=126.70  Aligned_cols=233  Identities=15%  Similarity=0.126  Sum_probs=138.2

Q ss_pred             ccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccC
Q psy5252           3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMED   82 (285)
Q Consensus         3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~   82 (285)
                      |.+.+...+...++.+|.+|+++|++++|+.+...++|.+++|.+++++.. .+ ||..|++.+++.++..++..+.++|
T Consensus       107 g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g-~~~~f~~~~~~~~i~~i~~~~~~~~  184 (395)
T PRK10054        107 NCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QS-INLPFWLAAICSAFPLVFIQIWVQR  184 (395)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-cCcHHHHHHHHHHHHHHHHHHHHhc
Confidence            344455677788899999999999999999999999999999999999886 55 9999998888777765555555555


Q ss_pred             CcCccccCccccccccHHHHHHHHhhhhhhHHHHHH--H---------HHHHHHHHHHHhcCCCCcchhHHHHHHHhhhc
Q psy5252          83 PERGEAEGRVTEERTSFGEDIRALCKNHRETWIFLN--L---------NWSIVADMTLYVVLPLRRSTAEAFQILISHAF  151 (285)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (285)
                      +++++++++    + + ....+..+++|.+++....  .         .+.+.+....  .+.+......+. .......
T Consensus       185 ~~~~~~~~~----~-~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~-~~~~~~~  255 (395)
T PRK10054        185 SEKAIATET----G-S-VWSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVV--ADSDFAEKVVAV-VLPVNAA  255 (395)
T ss_pred             cccccccch----h-h-hhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHh--cccchHHHHHHH-HHHhhhh
Confidence            433221111    1 1 1223556778877652211  0         1122221111  111111112222 2222333


Q ss_pred             cccchhhhhHHHhHHhhhhhcccceee--ee---eccc--ccc--c-cccccccccccCCcc-hhhhhccccCCcch---
Q psy5252         152 GDAGSPYLIGLLSEMFRHSLQLGASTL--VA---NAML--PSS--L-APSLPFSSSNSTSLP-LVSSLDETAHRSDE---  217 (285)
Q Consensus       152 g~~~g~~~~G~l~d~~~~~~~~~~~~~--~~---~~~~--~~~--~-~~~~~~~~~~~~~~~-~~~~~~~~~p~~~r---  217 (285)
                      ..+...+..|++.||.++|+.......  .+   .+..  .+.  + .....+..+.....| ..+.+.+..|++.|   
T Consensus       256 ~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~  335 (395)
T PRK10054        256 MVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASY  335 (395)
T ss_pred             heeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceeh
Confidence            444445678899999988865443221  11   1111  111  1 112222222233233 35567788888886   


Q ss_pred             -------hhhccccchhhhhhhhhhhhHHHHHHHHH
Q psy5252         218 -------FLAHKSDEFLAHKSDEFLALQYALFITSF  246 (285)
Q Consensus       218 -------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~  246 (285)
                             ++|..+||.++|.+.|+.|.+..+++.+.
T Consensus       336 ~~~~~~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~  371 (395)
T PRK10054        336 FSAQSLGWLGAAINPLVSGVILTTLPPWSLFVILAL  371 (395)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHH
Confidence                   15678999999999999998877765443

>KOG3764|consensus

Probab=99.55  E-value=3e-15  Score=124.92  Aligned_cols=246  Identities=17%  Similarity=0.182  Sum_probs=157.9

Q ss_pred             CcccccccccchhHHHHhhcccCCc-hhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHh
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDL-RSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFF   79 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~-rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~   79 (285)
                      +||+|.+...++..++++|.||+|+ |++++|+.-.+..+|..+||+++|.+.+..| .+.+|.+.+++.++...+-++.
T Consensus       168 LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G-k~aPFlVL~~v~Lld~~L~l~v  246 (464)
T KOG3764|consen  168 LQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG-KSAPFLVLAIVLLLDGALQLLV  246 (464)
T ss_pred             HhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC-CcCcHHHHHHHHHHHHHHHHhe
Confidence            6899999999999999999999975 7999999999999999999999999999886 9999999999998888666655


Q ss_pred             ccCCcCccccCccccccccHHHHHHHHhhhhhhHHHHH-------HHHHH-HH--HHHHHHhcCCC-CcchhHHHHHHHh
Q psy5252          80 MEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL-------NLNWS-IV--ADMTLYVVLPL-RRSTAEAFQILIS  148 (285)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~--~~~~~~~~~~~-~~~~~~~~~~~~~  148 (285)
                      ++..+.++.+.   ++    ...++.++++|..+....       ...+. |.  .+..+....++ +.|.     .++.
T Consensus       247 i~p~~~~~~~~---~~----~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~-----~fLp  314 (464)
T KOG3764|consen  247 IEPTEMDPDST---EQ----GTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGL-----AFLP  314 (464)
T ss_pred             eCccccCcccc---cc----CccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceee-----eecc
Confidence            55433322111   11    123455777777655211       11111 11  11111111222 3333     2344


Q ss_pred             hhccccchhhhhHHHhHHhhhhhccccee--eeeecc---cc--cc----c----cccccccccccCCcchhhhhccccC
Q psy5252         149 HAFGDAGSPYLIGLLSEMFRHSLQLGAST--LVANAM---LP--SS----L----APSLPFSSSNSTSLPLVSSLDETAH  213 (285)
Q Consensus       149 ~~~g~~~g~~~~G~l~d~~~~~~~~~~~~--~~~~~~---~~--~~----~----~~~~~~~~~~~~~~~~~~~~~~~~p  213 (285)
                      ..+...+|..+.|.++||+++.++...+.  +..++.   .+  ..    +    .+++..........|...+..|..+
T Consensus       315 ~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh  394 (464)
T KOG3764|consen  315 ASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRH  394 (464)
T ss_pred             cccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhh
Confidence            45778888899999999999665443311  111111   11  00    1    1111111112333444444444444


Q ss_pred             Cc---ch-----------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy5252         214 RS---DE-----------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLLGS  259 (285)
Q Consensus       214 ~~---~r-----------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (285)
                      .+   ..           .+|.++||.++|.+.+..|+.+.....++..++.+-++.+.+
T Consensus       395 ~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll~  454 (464)
T KOG3764|consen  395 VSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLLR  454 (464)
T ss_pred             ccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33   11           277899999999999999999988888888777776666543

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.55  E-value=7.4e-15  Score=127.68  Aligned_cols=234  Identities=13%  Similarity=0.041  Sum_probs=132.2

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      ++|++.+...|...+.+.++.++++|++++++++.+.++|..+|+.+++.+.+... |... +..+........+.  +.
T Consensus       103 l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~-~~~~~~~~~~~~~~--~~  178 (381)
T PRK03633        103 VAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELM-SVLP-WVTGLVLAAILPLL--FT  178 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-chHH-HHHHHHHHHHHHHH--Hh
Confidence            36788888888888888899999999999999999999999999999999987542 3333 33332222222122  22


Q ss_pred             cCCcCccccCccccccccHHHHHHHHhhhhhhHHHH-----H------HHHHHHHHHHHHHhcCCCCcchhHHHHHHHhh
Q psy5252          81 EDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIF-----L------NLNWSIVADMTLYVVLPLRRSTAEAFQILISH  149 (285)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (285)
                      +.+++++ ++   +++.    +.+..+++|.++...     .      ...+.|.+.. ..+.++...+...+     ..
T Consensus       179 ~~~~~~~-~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~g~s~~~~g~~~~-----~~  244 (381)
T PRK03633        179 RILNQQA-EN---HDST----SIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLN-HQGMSDASIGFWMA-----LL  244 (381)
T ss_pred             cccCCCC-CC---CCCC----CHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHH-----HH
Confidence            2221111 11   0111    123345666554311     0      1122232221 12332222222222     22


Q ss_pred             hccccchhhhhHHHhHHhhhhhcccceeee--eec--ccccc--ccccccccc-cccCCcchhhhhccccCCcch-----
Q psy5252         150 AFGDAGSPYLIGLLSEMFRHSLQLGASTLV--ANA--MLPSS--LAPSLPFSS-SNSTSLPLVSSLDETAHRSDE-----  217 (285)
Q Consensus       150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~~--~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~r-----  217 (285)
                      .++.+++....|++.||+++++........  ++.  .....  +.....+.. .....+...+.+.|..|++.+     
T Consensus       245 ~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~  324 (381)
T PRK03633        245 VSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLSQAAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQ  324 (381)
T ss_pred             HHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHH
Confidence            355666788999999999998765432111  100  01111  111111111 122333345667788887664     


Q ss_pred             ------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHH
Q psy5252         218 ------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGG  252 (285)
Q Consensus       218 ------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~  252 (285)
                            .+|..++|.+.|++.|+.++++.|.+.+.+.++..
T Consensus       325 ~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~  365 (381)
T PRK03633        325 ALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYL  365 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence                  16778999999999999999988887666655443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.54  E-value=8.9e-15  Score=135.30  Aligned_cols=84  Identities=18%  Similarity=0.272  Sum_probs=69.6

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC------------CchHHHHHhhHH
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG------------AWPWSLRVTPVL   68 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g------------~wr~~f~i~~~~   68 (285)
                      ++|++.++..|...++++|++|+++|++.++++.....+|.++++.++..+...++            +||+.|++.+++
T Consensus       264 l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp  343 (742)
T TIGR01299       264 LSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFP  343 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999998877765321            489998887776


Q ss_pred             HHHHHHHHHHhccCCcC
Q psy5252          69 GACAVLLILFFMEDPER   85 (285)
Q Consensus        69 ~~~~~~l~~~~~~~~~~   85 (285)
                      .++. ++..+++||+|+
T Consensus       344 ~ll~-ll~~~~lPESPr  359 (742)
T TIGR01299       344 CVFA-IGALTFMPESPR  359 (742)
T ss_pred             HHHH-HHHHHHcCCCHH
Confidence            6554 456677888764

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.53  E-value=1.6e-14  Score=123.38  Aligned_cols=230  Identities=19%  Similarity=0.206  Sum_probs=148.1

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      .|++.+...+...+++.|++|+|+|++.+++.+...++|..+++.+++.+.+..+ ||+.|++.++..++..+...+. +
T Consensus        97 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~  174 (352)
T cd06174          97 LGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG-WRWLFLILAILGLLLALLLLFL-L  174 (352)
T ss_pred             HHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHH-H
Confidence            5888899999999999999999999999999999999999999999999999885 9999999888877766554333 2


Q ss_pred             CCcCccccCccccccccHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhccccchhhhh
Q psy5252          82 DPERGEAEGRVTEERTSFGEDIRALCKNHR-ETWIFLNLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLI  160 (285)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  160 (285)
                                        +..+......-. .........+.+.+.....+.+..+.+....     ...++..++.++.
T Consensus       175 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~  231 (352)
T cd06174         175 ------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLS-----LFGLGGILGALLG  231 (352)
T ss_pred             ------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHH-----HHHHHHHHHHHHH
Confidence                              000000000000 0001112223333322222333333333322     2336667778899


Q ss_pred             HHHhHHhhhhh-cccceeee--ee---cc-cccc--c-ccccccccc-ccCCcchhhhhccccCCcchh-----------
Q psy5252         161 GLLSEMFRHSL-QLGASTLV--AN---AM-LPSS--L-APSLPFSSS-NSTSLPLVSSLDETAHRSDEF-----------  218 (285)
Q Consensus       161 G~l~d~~~~~~-~~~~~~~~--~~---~~-~~~~--~-~~~~~~~~~-~~~~~~~~~~~~~~~p~~~r~-----------  218 (285)
                      +++.||+++|+ ........  +.   .. ..+.  . ....+...+ ........+.+.|..|+++|.           
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (352)
T cd06174         232 GLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGS  311 (352)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence            99999999987 44332111  00   01 1111  1 111111111 334455678889999988872           


Q ss_pred             hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252         219 LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL  256 (285)
Q Consensus       219 l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (285)
                      ++..++|.+.|.+.|..+++..+...+++.+++.+...
T Consensus       312 ~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         312 LGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             HHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence            56689999999999989999999888887777666543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.53  E-value=1.3e-14  Score=126.15  Aligned_cols=236  Identities=8%  Similarity=-0.117  Sum_probs=135.3

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      +|.+.+...|...++..++  ++||++++|......++|.+++|++++.+.+++| ||..|.+......+ .++.....|
T Consensus       104 ~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g-~~~~f~~~~~~~~~-~~~~~~~~~  179 (382)
T TIGR00902       104 FALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFD-EQNILAILTAGLAF-MLIGFLIKP  179 (382)
T ss_pred             HHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcC-hhHHHHHHHHHHHH-HHHHHHcCC
Confidence            4566677788888887654  5789999999999999999999999999999986 99999887655332 323333333


Q ss_pred             CCcCccccCccccccccHHHHHHHHhhhhhhHHHHH-----------HHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhh
Q psy5252          82 DPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL-----------NLNWSIVADMTLYVVLPLRRSTAEAFQILISHA  150 (285)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (285)
                      +++++++++++  ++ +..+..+..+|+|.++....           ...+.+.+. ...+.++...+...+     ...
T Consensus       180 ~~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l-~~~g~s~~~~g~l~~-----~~~  250 (382)
T TIGR00902       180 TIPPKDAIPED--ES-QGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYW-QAAGISASATGLLWG-----IGV  250 (382)
T ss_pred             CCCCCcccccc--cc-ccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCHhHHHHHHH-----HHH
Confidence            32222111111  11 11234566788888765221           222333332 223444444443333     234


Q ss_pred             ccccchhhhhHHHhHHhhhhhcccceeeee-----ecccccc---cc-ccccccccc-cCCcchhhhhccccCCcchh--
Q psy5252         151 FGDAGSPYLIGLLSEMFRHSLQLGASTLVA-----NAMLPSS---LA-PSLPFSSSN-STSLPLVSSLDETAHRSDEF--  218 (285)
Q Consensus       151 ~g~~~g~~~~G~l~d~~~~~~~~~~~~~~~-----~~~~~~~---~~-~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~--  218 (285)
                      ++.+++..+.+++.||++.++.+....+..     .....+.   +. .-.+-.... ........++.+. |+++|.  
T Consensus       251 ~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~  329 (382)
T TIGR00902       251 LAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKL  329 (382)
T ss_pred             HHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHH
Confidence            556666778889999998887554322111     0111111   11 111111111 1112233455666 776651  


Q ss_pred             ----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHH
Q psy5252         219 ----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGG  252 (285)
Q Consensus       219 ----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~  252 (285)
                                ++..++|.++|.+.|+.|. ..+...+++.+++.
T Consensus       330 q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~  372 (382)
T TIGR00902       330 QALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAF  372 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence                      4457899999999999986 55665665555443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.53  E-value=6.9e-15  Score=132.15  Aligned_cols=83  Identities=16%  Similarity=0.189  Sum_probs=72.0

Q ss_pred             CcccccccccchhHHHHhhcc-cCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHh
Q psy5252           1 MVGIGEASYSTIAPTIISDLF-VKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFF   79 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~-~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~   79 (285)
                      ++|+|.+...|....++.+++ |+++|++++|++....++|..+||.+++.+.++++ ||+.|++...+.++..++..+.
T Consensus       103 l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g-wr~~f~i~~~~~~~~~~l~~~~  181 (495)
T PRK14995        103 LLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY-WGSVFLINVPIVLVVMGLTARY  181 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-hHHHHHHHHHHHHHHHHHHHHh
Confidence            478888988898888888876 67899999999999999999999999999999886 9999999887777776666677


Q ss_pred             ccCCc
Q psy5252          80 MEDPE   84 (285)
Q Consensus        80 ~~~~~   84 (285)
                      +|+++
T Consensus       182 l~~~~  186 (495)
T PRK14995        182 VPRQA  186 (495)
T ss_pred             CCCCC
Confidence            77654

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.53  E-value=5.5e-14  Score=138.35  Aligned_cols=245  Identities=13%  Similarity=0.005  Sum_probs=138.4

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhc--------cCCchHHHHHhhHHHHHH
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSV--------MGAWPWSLRVTPVLGACA   72 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~--------~g~wr~~f~i~~~~~~~~   72 (285)
                      ++|++.+...++..++++|++|+++|++++|+.+.+.++|.++|+++++++.+.        +++|++.+.+..+...+.
T Consensus       112 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (1146)
T PRK08633        112 LLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVL  191 (1146)
T ss_pred             HHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHH
Confidence            368889999999999999999999999999999999999999999999999876        333555555444444444


Q ss_pred             HHHHHHhccCCcCccccC--cc-ccccccHHHHHHHHhhhhhhHHHHH-----------HHHHHHHHHHHHHhcCCC-Cc
Q psy5252          73 VLLILFFMEDPERGEAEG--RV-TEERTSFGEDIRALCKNHRETWIFL-----------NLNWSIVADMTLYVVLPL-RR  137 (285)
Q Consensus        73 ~~l~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~-~~  137 (285)
                      .++..+.+|+.++...+.  +. ........+.++.+++++.++....           ...+.+.+....++.+.. ..
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~  271 (1146)
T PRK08633        192 GLIFAYRLPKVPAAAPEVFDKKKYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQV  271 (1146)
T ss_pred             HHHHHhcCcCCCCCCcccccccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHH
Confidence            444445566654332221  10 1111223455677777776654211           112223333333344433 22


Q ss_pred             chhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeeee-----eccc-ccc--c-ccccccccc-ccCCcchhhh
Q psy5252         138 STAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLVA-----NAML-PSS--L-APSLPFSSS-NSTSLPLVSS  207 (285)
Q Consensus       138 ~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~~-----~~~~-~~~--~-~~~~~~~~~-~~~~~~~~~~  207 (285)
                      +..     .....++.+++.++.|+++||+++++......+..     .+.. ...  + ...+++..+ .....+..++
T Consensus       272 g~~-----~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  346 (1146)
T PRK08633        272 QYL-----LAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNAL  346 (1146)
T ss_pred             HHH-----HHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            222     23334666777889999999988765443321111     1111 111  1 111112222 2334556788


Q ss_pred             hccccCCcchh-----------hhccccchhhhhhhhh-hhhHHHHHHHHHHHHH
Q psy5252         208 LDETAHRSDEF-----------LAHKSDEFLAHKSDEF-LALQYALFITSFIEVL  250 (285)
Q Consensus       208 ~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~-~~~~~~~~~~~~~~~~  250 (285)
                      +.+.+|++.|.           ++..+++.+++.+... .++...+++.+.+.++
T Consensus       347 ~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  401 (1146)
T PRK08633        347 IQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLI  401 (1146)
T ss_pred             HhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            88999999872           3334455555544331 2334445444443333

>PRK10133 L-fucose transporter; Provisional

Probab=99.53  E-value=3.7e-14  Score=125.39  Aligned_cols=238  Identities=11%  Similarity=0.019  Sum_probs=136.2

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh-c-----------------c-------
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS-V-----------------M-------   55 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~-~-----------------~-------   55 (285)
                      ++|+|.+...+..++++.|+.|+++|.+.+++.+....+|..+++.+++.+.. .                 .       
T Consensus       126 l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~  205 (438)
T PRK10133        126 IIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLV  205 (438)
T ss_pred             HHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHH
Confidence            36899999999999999998877777778999999999999999999876541 0                 0       


Q ss_pred             CCchHHHHHhh-HHHHHHHHHHHHhccCCcCccccCccccccccHHHHHHHHhhhhhhHHHH-----------HHHHHHH
Q psy5252          56 GAWPWSLRVTP-VLGACAVLLILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIF-----------LNLNWSI  123 (285)
Q Consensus        56 g~wr~~f~i~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~  123 (285)
                      .+||++|+... +..++..++.....||.+.+  +++ ++++.+..+..+.++++|.++...           ....|.+
T Consensus       206 ~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~--~~~-~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~  282 (438)
T PRK10133        206 LSVQTPYMIIVAIVLLVALLIMLTKFPALQSD--NHS-DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLI  282 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc--ccc-cccccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            13677776443 33333322222233332111  111 111223334556677888765411           1122333


Q ss_pred             HHHH-HHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeeee-----ecc-ccc-c-ccccccc
Q psy5252         124 VADM-TLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLVA-----NAM-LPS-S-LAPSLPF  194 (285)
Q Consensus       124 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~~-----~~~-~~~-~-~~~~~~~  194 (285)
                      .+.. ..++.++...+....     ...++..+|.+++|++.||+++++.........     ... .+. . +.....+
T Consensus       283 ~~l~~~~~g~s~~~ag~~~~-----~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  357 (438)
T PRK10133        283 RYAVEEIPGMTAGFAANYLT-----GTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLC  357 (438)
T ss_pred             HHHhhhcCCCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            3321 123444444333333     334777888999999999999987665432110     001 111 1 1111112


Q ss_pred             cccccC-CcchhhhhccccCCcch---------hhhccccchhhhhhhhhhh-hHHHHHHHHH
Q psy5252         195 SSSNST-SLPLVSSLDETAHRSDE---------FLAHKSDEFLAHKSDEFLA-LQYALFITSF  246 (285)
Q Consensus       195 ~~~~~~-~~~~~~~~~~~~p~~~r---------~l~~~~~p~~~G~~~~~~~-~~~~~~~~~~  246 (285)
                      ..+.+. .++.++...|..|++..         .+++.++|.+.|.+.|+.| .+.++++..+
T Consensus       358 glg~~~i~P~~~s~a~~~~~~~~~~as~l~~~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~  420 (438)
T PRK10133        358 SAFMSIQYPTIFSLGIKNLGQDTKYGSSFIVMTIIGGGIVTPVMGFVSDAAGNIPTAELIPAL  420 (438)
T ss_pred             HHHHHHHHHHHHHHHHcccchhhccchhHHhHHhccchHHHHHHHHHHHhccchHHHHHHHHH
Confidence            222233 33345666676666432         2566899999999999987 7887765433

>TIGR00898 2A0119 cation transport protein

Probab=99.52  E-value=2.1e-14  Score=129.34  Aligned_cols=247  Identities=15%  Similarity=0.075  Sum_probs=143.6

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      ++|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.    +||+.|++.+++.++..+.. +++
T Consensus       189 l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~----~wr~~~~~~~i~~~~~~~~~-~~~  263 (505)
T TIGR00898       189 LVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP----DWRWLQLAVSLPTFLFFLLS-WFV  263 (505)
T ss_pred             HHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHH-Hhc
Confidence            4688999999999999999999999999999999999999999998886664    39999999998877766554 677


Q ss_pred             cCCcCccccCcc--------------------c-------cc---cccHHHHHHHHhhhhhhHHHH--HHHHHHHH---H
Q psy5252          81 EDPERGEAEGRV--------------------T-------EE---RTSFGEDIRALCKNHRETWIF--LNLNWSIV---A  125 (285)
Q Consensus        81 ~~~~~~~~~~~~--------------------~-------~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~  125 (285)
                      ||+++....++.                    +       ++   +...+..++.++++|.++...  ....|...   +
T Consensus       264 ~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  343 (505)
T TIGR00898       264 PESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSY  343 (505)
T ss_pred             CCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence            876542100000                    0       00   000012445666666654421  11222211   1


Q ss_pred             HHHHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee-------eeccccc--cc--cccccc
Q psy5252         126 DMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV-------ANAMLPS--SL--APSLPF  194 (285)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~-------~~~~~~~--~~--~~~~~~  194 (285)
                      .......+....+...  . .....+..+.+.++.+++.||++||+......+.       ..+....  .+  ...++.
T Consensus       344 ~~~~~~~~~~~~~~~~--~-~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  420 (505)
T TIGR00898       344 YGLVLDLGNLGGNIYL--D-LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLG  420 (505)
T ss_pred             HHHhccccccCCChHH--H-HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence            1111112211111111  1 1122244456677899999999998765542211       1111111  11  111111


Q ss_pred             cc-cccCCcchhhhhccccCCcchh-----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy5252         195 SS-SNSTSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLL  257 (285)
Q Consensus       195 ~~-~~~~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (285)
                      .. ........+.+.+|.+|++.|.           +|..++|.+.+ + +..+....+.+.+.+.++++++.++
T Consensus       421 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~  493 (505)
T TIGR00898       421 KFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLF  493 (505)
T ss_pred             HHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHc
Confidence            11 1222334567788999999982           56688998888 3 4445566666666666666555443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.52  E-value=3.5e-15  Score=133.65  Aligned_cols=83  Identities=14%  Similarity=0.418  Sum_probs=73.7

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      ++|++.+...+...+++.|++|+|+|+++++++..+..+|..+++.+++++.++++ ||+.|++.+.+.++..++..+..
T Consensus        99 ~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-w~~~f~~~~~~~~~~~~~~~~~~  177 (485)
T TIGR00711        99 IQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH-WRWIFLINVPIGIIVVVVAFFIL  177 (485)
T ss_pred             HHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC-ceehhhhhhHHHHHHHHHHHHHc
Confidence            36888899999999999999999999999999999999999999999999999886 99999998888777776666667


Q ss_pred             cCCc
Q psy5252          81 EDPE   84 (285)
Q Consensus        81 ~~~~   84 (285)
                      ||++
T Consensus       178 ~~~~  181 (485)
T TIGR00711       178 PRDK  181 (485)
T ss_pred             CCcc
Confidence            6644

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00895 2A0115 benzoate transport

Probab=99.51  E-value=1.1e-14  Score=126.78  Aligned_cols=83  Identities=19%  Similarity=0.406  Sum_probs=72.5

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      +.|++.+...+...++++|++|+++|++++++.+.+..+|..+++.+++.+.+..+ ||+.|++.++...+..++...++
T Consensus       114 ~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~  192 (398)
T TIGR00895       114 LAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG-WRSLFYVGGIAPLLLLLLLMRFL  192 (398)
T ss_pred             HHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhccc-ceeehhhhhhHHHHHHHHHHHhC
Confidence            36888899999999999999999999999999999999999999999999998886 99999988766666666666677


Q ss_pred             cCCc
Q psy5252          81 EDPE   84 (285)
Q Consensus        81 ~~~~   84 (285)
                      ||++
T Consensus       193 ~~~~  196 (398)
T TIGR00895       193 PESI  196 (398)
T ss_pred             CCCC
Confidence            7654

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.51  E-value=8.1e-14  Score=128.10  Aligned_cols=166  Identities=13%  Similarity=0.144  Sum_probs=117.3

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC---------------------Cch
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG---------------------AWP   59 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g---------------------~wr   59 (285)
                      ++|+|.+..++.+.+++.|++|+++|++++++++.+..+|.++|+++++++.+.+.                     .||
T Consensus       181 l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWw  260 (633)
T TIGR00805       181 LRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWW  260 (633)
T ss_pred             HHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHH
Confidence            47999999999999999999999999999999999999999999999999887542                     266


Q ss_pred             HHHHHhhHHHHHHHHHHHHhccCCcCccc--c----Ccc--c--cc---------cccHHHHHHHHhhhhhhHH------
Q psy5252          60 WSLRVTPVLGACAVLLILFFMEDPERGEA--E----GRV--T--EE---------RTSFGEDIRALCKNHRETW------  114 (285)
Q Consensus        60 ~~f~i~~~~~~~~~~l~~~~~~~~~~~~~--~----~~~--~--~~---------~~~~~~~~~~~~~~~~~~~------  114 (285)
                      ..|++.+++.++..+.++++.++.++...  +    +++  +  ++         .+++...++.++++|.++.      
T Consensus       261 l~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~  340 (633)
T TIGR00805       261 IGFLICGGVALLTSIPFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQV  340 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            77888888887777655444443332111  0    000  0  00         0123345677888888765      


Q ss_pred             -----HHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhh
Q psy5252         115 -----IFLNLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHS  170 (285)
Q Consensus       115 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~  170 (285)
                           ...+..|.|.+...+++.++.+.+...+...    +.+.++|.+++|+++||++.+
T Consensus       341 ~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~----i~~~~vG~~l~G~l~~r~~~~  397 (633)
T TIGR00805       341 IDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVN----LPAAGLGYLIGGFIMKKFKLN  397 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhh----hhHHHHHHhhhhheeeeeccc
Confidence                 2234567777777777777766665555332    234566778999999999854

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.50  E-value=1.2e-14  Score=124.40  Aligned_cols=169  Identities=19%  Similarity=0.305  Sum_probs=109.5

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      ++|++.+...+...+++.|++|+|+|++++++.+.+.++|..+++.+++.+.+.++ ||+.|++.+++.++..++...+.
T Consensus        94 l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~-~~~~~~~~~~~~~~~~il~~~~~  172 (352)
T PF07690_consen   94 LLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFG-WRWAFLISAILSLIAAILFILFL  172 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH-HCCHHHHHHHHHHHHHHHHHCCC
T ss_pred             ccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccc-cccccccccchhhhhhhhHhhhh
Confidence            36888899999999999999999999999999999999999999999999998775 99999999999888876554555


Q ss_pred             cCCcCccccCcc-cc---ccccHHHHHHHHhhhhhhH-HHH----------HHHHHHHHHHHHHHhcC-CCCcchhHHHH
Q psy5252          81 EDPERGEAEGRV-TE---ERTSFGEDIRALCKNHRET-WIF----------LNLNWSIVADMTLYVVL-PLRRSTAEAFQ  144 (285)
Q Consensus        81 ~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~-~~~----------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  144 (285)
                      +++++++.++++ ++   ++++..+.++.++++|.+| ...          ....|.+.+....++.+ ..+.+...+  
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--  250 (352)
T PF07690_consen  173 PEPPPPRERESPKESESKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFS--  250 (352)
T ss_dssp             ---STTTT--SSTTTT--HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHH--
T ss_pred             hhcccccccccccccccccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHH--
Confidence            554443322221 11   2222333456666777553 111          11222333323334444 122222222  


Q ss_pred             HHHhhhccccchhhhhHHHhHHhhhhhcccc
Q psy5252         145 ILISHAFGDAGSPYLIGLLSEMFRHSLQLGA  175 (285)
Q Consensus       145 ~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~  175 (285)
                         ...+...++.++.|+++||+++++....
T Consensus       251 ---~~~~~~~~~~~~~~~l~~~~~~~~~~~~  278 (352)
T PF07690_consen  251 ---IFGIVGIIGSLLAGRLSDRFGRRRRLLI  278 (352)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence               2224445557799999999988654443

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11043 putative transporter; Provisional

Probab=99.48  E-value=1e-13  Score=121.35  Aligned_cols=158  Identities=11%  Similarity=0.074  Sum_probs=103.6

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      +|++.+...+...+++.|++|++++++..+.......+|..++|.+++.+.+.++ ||+.|++.+++.++..++..+ .+
T Consensus       104 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~-~~  181 (401)
T PRK11043        104 QAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFG-WQAIFATLFAITLLLILPTLR-LK  181 (401)
T ss_pred             HHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHHHHH-cC
Confidence            5677777777788899999999999999999999999999999999999999886 999999988887776655443 44


Q ss_pred             CCcCccccCccccccccHHHHHHHHhhhhhhHHHH-----------HHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhh
Q psy5252          82 DPERGEAEGRVTEERTSFGEDIRALCKNHRETWIF-----------LNLNWSIVADMTLYVVLPLRRSTAEAFQILISHA  150 (285)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (285)
                      |++++++   +    ++.+++++..+++|.++...           ....+.|.+. ..++.++.+.+..     .....
T Consensus       182 ~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~g~~-----~~~~~  248 (401)
T PRK11043        182 PSKKARK---Q----SQDALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFIL-EQMGYSPADIGLS-----YVPQT  248 (401)
T ss_pred             CCCCccc---c----chHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHH-HHcCCCHHHHHHH-----HHHHH
Confidence            3322111   0    11234566677777654311           1122233322 2233333333322     22223


Q ss_pred             ccccchhhhhHHHhHHhhhhhccc
Q psy5252         151 FGDAGSPYLIGLLSEMFRHSLQLG  174 (285)
Q Consensus       151 ~g~~~g~~~~G~l~d~~~~~~~~~  174 (285)
                      ++..+|..+.+++.||+++++..+
T Consensus       249 ~~~~~g~~~~~~l~~r~~~~~~~~  272 (401)
T PRK11043        249 IAFLVGGYGCRAALQKWGGEQLLP  272 (401)
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHH
Confidence            555666778889999998876543

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.48  E-value=1.6e-13  Score=121.35  Aligned_cols=231  Identities=13%  Similarity=0.084  Sum_probs=131.3

Q ss_pred             ccccccccchhHHHHhhcc-cCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh-------ccCCchHHHHHhhHHHHHHHH
Q psy5252           3 GIGEASYSTIAPTIISDLF-VKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS-------VMGAWPWSLRVTPVLGACAVL   74 (285)
Q Consensus         3 G~g~~~~~~~~~~~i~~~~-~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~-------~~g~wr~~f~i~~~~~~~~~~   74 (285)
                      +++.+...+...++.+|.. +++||++..++.+.+.++|..+++.+.+.+..       .. +||+.+.+.+++.++..+
T Consensus       110 ~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~-g~~~~~~i~~~l~~~~~~  188 (437)
T TIGR00792       110 GLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKF-GWFMFALVLALIGVVSLI  188 (437)
T ss_pred             HHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc-cHHHHHHHHHHHHHHHHH
Confidence            3444455566677888887 46899999999999999998888777666553       23 499999999988887776


Q ss_pred             HHHHhccCCcCccccCccccccccHHHHHHHHhhhhhhHHHHH--HHHHHHHHH---HHHHhcCCC-CcchhHHHHHHHh
Q psy5252          75 LILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL--NLNWSIVAD---MTLYVVLPL-RRSTAEAFQILIS  148 (285)
Q Consensus        75 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~  148 (285)
                      +..+..||++++..++  ++++.+.++.++.++++|.++....  ...+.....   ...+..... ......+... ..
T Consensus       189 ~~~~~~~e~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  265 (437)
T TIGR00792       189 ICFFGTKERYSEIPKN--IEKKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLGDPELFSYMG-SI  265 (437)
T ss_pred             HHHcCCEecCCCCCcc--cccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecCChHHHHHHH-HH
Confidence            7666777754321111  1123346677888888988765322  111111110   001111100 0011122222 22


Q ss_pred             hhccccchhhhhHHHhHHhhhhhcccceeee--ee---cc-cc-cc--cccc-cccccc-ccCCcchhhhhccccCCc--
Q psy5252         149 HAFGDAGSPYLIGLLSEMFRHSLQLGASTLV--AN---AM-LP-SS--LAPS-LPFSSS-NSTSLPLVSSLDETAHRS--  215 (285)
Q Consensus       149 ~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~---~~-~~-~~--~~~~-~~~~~~-~~~~~~~~~~~~~~~p~~--  215 (285)
                      ..++.+++.++.++++||+++|+........  ++   .. .+ ..  +... .+...+ ........++++|..+.+  
T Consensus       266 ~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  345 (437)
T TIGR00792       266 AIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEW  345 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence            2466667788999999999988765442211  10   01 11 11  1111 111111 223344567777776532  


Q ss_pred             -----ch-----------hhhccccchhhhhhhhhhhh
Q psy5252         216 -----DE-----------FLAHKSDEFLAHKSDEFLAL  237 (285)
Q Consensus       216 -----~r-----------~l~~~~~p~~~G~~~~~~~~  237 (285)
                           .+           .++..+++.+.|.+.|..|+
T Consensus       346 ~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       346 KTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence                 22           15668999999999887665

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.47  E-value=5.8e-14  Score=122.10  Aligned_cols=234  Identities=8%  Similarity=-0.072  Sum_probs=131.7

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      +|++.+...|...+++.++  +++|+++++......++|.++||++++++.++++ ||..|++.++..++.. +..+..|
T Consensus       104 ~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g-~~~~f~~~~~~~~~~~-~~~~~~~  179 (382)
T PRK11128        104 FNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFG-EQAILWILTAGVASML-LGQLLRP  179 (382)
T ss_pred             HHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcC-hhHHHHHHHHHHHHHH-HHHHccC
Confidence            4667778888888888877  4578889999999999999999999999999986 9999988876554443 3333444


Q ss_pred             CCcCccccCccccccccHHHHHHHHhhhhhhHHHHH-----------HHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhh
Q psy5252          82 DPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL-----------NLNWSIVADMTLYVVLPLRRSTAEAFQILISHA  150 (285)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (285)
                      |++++.++++   ++++..+.++.++|+|.++....           .....+.+. .+.+.++.+.+...+     ...
T Consensus       180 ~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~-----~~~  250 (382)
T PRK11128        180 TIMPQGESRQ---QESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYW-QAAGYSASTIGYLWS-----LGV  250 (382)
T ss_pred             CCCCcccccc---ccccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHH-HHCCCCHhHHHHHHH-----HHH
Confidence            4322111111   11111345677888888764221           111112221 123333333333333     223


Q ss_pred             ccccchhhhhHHHhHHhhhhhcccceeee--ee---cccccc---ccc-cccccccccCC-cchhhhhccccCCcch---
Q psy5252         151 FGDAGSPYLIGLLSEMFRHSLQLGASTLV--AN---AMLPSS---LAP-SLPFSSSNSTS-LPLVSSLDETAHRSDE---  217 (285)
Q Consensus       151 ~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~---~~~~~~---~~~-~~~~~~~~~~~-~~~~~~~~~~~p~~~r---  217 (285)
                      ++.++...+.|++.||+++++.+......  +.   ......   +.. ..+...+.+.. ......+.+..+.+..   
T Consensus       251 ~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (382)
T PRK11128        251 VAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAARPGSEVIRLQ  330 (382)
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHhhhHHHH
Confidence            45566667889999999988765442211  11   111111   111 11111111212 2223444554333322   


Q ss_pred             ----h----hhccccchhhhhhhhhhhhHHHHHHHHHHHH
Q psy5252         218 ----F----LAHKSDEFLAHKSDEFLALQYALFITSFIEV  249 (285)
Q Consensus       218 ----~----l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~  249 (285)
                          .    ++..+||.++|.+.|+.|. ..++..+++.+
T Consensus       331 ~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~  369 (382)
T PRK11128        331 ALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVAL  369 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHH
Confidence                1    2447889999999999886 34554444433

>TIGR00901 2A0125 AmpG-related permease

Probab=99.47  E-value=2.6e-13  Score=116.83  Aligned_cols=164  Identities=12%  Similarity=0.072  Sum_probs=105.2

Q ss_pred             ccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCC-------chHHHHHhhHHHHHHHHH
Q psy5252           3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGA-------WPWSLRVTPVLGACAVLL   75 (285)
Q Consensus         3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~-------wr~~f~i~~~~~~~~~~l   75 (285)
                      +++.+...++..+++.|++|+|||+++.++...+.++|.++++.+++.+....++       ||..|++.++..++..+.
T Consensus        94 ~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~  173 (356)
T TIGR00901        94 AFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLV  173 (356)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHH
Confidence            3445556678889999999999999999999999999999999999999887632       999999999887776655


Q ss_pred             HHHhccCCcCccccCccccccccHHHHHHHHhhhhh---hHHHHH-----------HHHHHHHHHHHHHhcCCCCcchhH
Q psy5252          76 ILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNHR---ETWIFL-----------NLNWSIVADMTLYVVLPLRRSTAE  141 (285)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~  141 (285)
                      .++..||+++++.++  ++++++.++.++.++++|.   ++....           ...+.+.+... .+.++++.+.. 
T Consensus       174 ~~~~~~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~-  249 (356)
T TIGR00901       174 TLFLAKEPQEDASVP--KPLTQAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALV-  249 (356)
T ss_pred             HHHhccCCCcccccc--hhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH-
Confidence            444566654321111  1112234456677777764   332111           11222322221 33333332222 


Q ss_pred             HHHHHHhhhccccchhhhhHHHhHHhhhhhcc
Q psy5252         142 AFQILISHAFGDAGSPYLIGLLSEMFRHSLQL  173 (285)
Q Consensus       142 ~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~  173 (285)
                         ......++.+++.+++|++.||+++|+..
T Consensus       250 ---~~~~~~~~~~~g~~~~g~l~~r~g~~~~l  278 (356)
T TIGR00901       250 ---AKINGLLGAILGGLIGGIIMQPLNILYAL  278 (356)
T ss_pred             ---hHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence               22222345566778999999999988653

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.47  E-value=3.2e-13  Score=118.43  Aligned_cols=233  Identities=12%  Similarity=0.036  Sum_probs=138.0

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhc--------------------------c
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSV--------------------------M   55 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~--------------------------~   55 (285)
                      .|+|.+...+..++++.+..|+++|++.+++.+...++|..+++.+++.+...                          .
T Consensus       104 ~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (410)
T TIGR00885       104 LTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLA  183 (410)
T ss_pred             HHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHH
Confidence            58888999999999999999999999999999999999999999999887532                          2


Q ss_pred             CCchHHHHHhhHHHHHHHHHHHHhccCCcCccccCccccccccHHHHHHHHhhhhhhHHHHHH--HHH----HHHHHHHH
Q psy5252          56 GAWPWSLRVTPVLGACAVLLILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFLN--LNW----SIVADMTL  129 (285)
Q Consensus        56 g~wr~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~  129 (285)
                       +||++|++.+++.++..++.. +.+.|+.++.++    ++.+..+..+..+|+|.+++....  ...    ....+...
T Consensus       184 -~w~~~fl~~a~~~~~~~~~~~-~~~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~  257 (410)
T TIGR00885       184 -SVQTPYMIIGAVVLAVALLIM-LTKMPALNHSDA----KQISFSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQ  257 (410)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHH-HhcCCCCCcccc----ccccchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             399999999887766554432 333332111111    111233345567777777652110  000    11111112


Q ss_pred             HhcC---CCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee-----eecc-ccc-c-c----cccccc
Q psy5252         130 YVVL---PLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV-----ANAM-LPS-S-L----APSLPF  194 (285)
Q Consensus       130 ~~~~---~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~-----~~~~-~~~-~-~----~~~~~~  194 (285)
                      +..+   ....+...  ........+..+|+++++++.||+++++........     +... ... . +    ..+++.
T Consensus       258 y~~~~~~~~~~~~a~--~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~~~~l~~~glf~  335 (410)
T TIGR00885       258 YAVRLIPGMTAGFAA--NYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVGLYCLTLCSAFM  335 (410)
T ss_pred             HHhhccCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            2211   11111111  111112245567899999999999988765442211     1111 111 1 1    111111


Q ss_pred             cccccCCcchhhhhccccCCcch---------hhhccccchhhhhhhhhh------hhHHHHHHHH
Q psy5252         195 SSSNSTSLPLVSSLDETAHRSDE---------FLAHKSDEFLAHKSDEFL------ALQYALFITS  245 (285)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~p~~~r---------~l~~~~~p~~~G~~~~~~------~~~~~~~~~~  245 (285)
                         ...++..++...+..+++.+         .+|+++.|.+.|.+.|+.      +++.+|++..
T Consensus       336 ---s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~  398 (410)
T TIGR00885       336 ---SLMFPTIYGIALKGLGQDTKYGAAGLVMAIIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPL  398 (410)
T ss_pred             ---HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhccchHHHHHHHHHHHhcccccCccchHHHHHH
Confidence               23334456667777777665         167799999999999964      4777776533

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.45  E-value=1.7e-13  Score=119.58  Aligned_cols=156  Identities=18%  Similarity=0.207  Sum_probs=102.7

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      +|++.+...+....+..|+++++++++++++++.+..++..++|.+++.+.+..+ ||+.|++.++..++..++..++.|
T Consensus       106 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~  184 (394)
T PRK11652        106 QGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG-WRACYLFLLLLGAGVTFSMARWMP  184 (394)
T ss_pred             HHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHHHHHhCC
Confidence            5677777778888899999999999999999999999999999999999998876 999999988877666655556667


Q ss_pred             CCcCccccCccccccccHHHHHHHHhhhhhhHHHHH-----HH------HHHHHHHHHHHhcCCCCcchhHHHHHHHhhh
Q psy5252          82 DPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL-----NL------NWSIVADMTLYVVLPLRRSTAEAFQILISHA  150 (285)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (285)
                      |+++++.+      +.+.++.++..+++|.++....     ..      .+.+.+....++.++.+    .+ .......
T Consensus       185 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~-~~~~~~~  253 (394)
T PRK11652        185 ETRPADAR------RTRVLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMT----VS-ILFILPI  253 (394)
T ss_pred             ccCccccc------hhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHH----HH-HHHHHHH
Confidence            65432211      1124566777778877653111     00      01111111112222222    22 2222334


Q ss_pred             ccccchhhhhHHHhHHhhh
Q psy5252         151 FGDAGSPYLIGLLSEMFRH  169 (285)
Q Consensus       151 ~g~~~g~~~~G~l~d~~~~  169 (285)
                      ++.+++.++.+++.||.++
T Consensus       254 ~~~~~g~~~~~~l~~~~~~  272 (394)
T PRK11652        254 PAAFFGAWFAGRPNKRFST  272 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            6666677788888888873

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.44  E-value=7.8e-13  Score=115.35  Aligned_cols=231  Identities=10%  Similarity=-0.079  Sum_probs=133.3

Q ss_pred             cchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccCCcCcccc
Q psy5252          10 STIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDPERGEAE   89 (285)
Q Consensus        10 ~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~   89 (285)
                      .+...++..|+.++++++...+....+..+|..+|+...+++.+.++ ||..|++.+++.++..+...+..|+++++ .+
T Consensus       115 d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~g-w~~~f~~~a~l~~~~~~~~~~~~~~~~~~-~~  192 (390)
T TIGR02718       115 DIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFG-QRPAFLLVACVPLASLVCVLWLKDRAVAS-PE  192 (390)
T ss_pred             HHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHcCCCCcCc-cc
Confidence            34444566777777777888888888889999999999999999886 99999999988776665554443332211 11


Q ss_pred             CccccccccHHHHHHHHhhhhhhHHHHH-----------HHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhccccchhh
Q psy5252          90 GRVTEERTSFGEDIRALCKNHRETWIFL-----------NLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPY  158 (285)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  158 (285)
                      +     +++..++++..+|+|.++....           ...+.+.+. .+.+.++++.+....    .......+++..
T Consensus       193 ~-----~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l-~~~G~s~~~ig~~~~----~~~~~~~~~g~~  262 (390)
T TIGR02718       193 A-----PLARRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYL-VDAGWPLEWIGRLGM----AGGAVTVLLGCG  262 (390)
T ss_pred             c-----chhhHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHH-HhcCCCHHHHHHHHh----HHHHHHHHHHHH
Confidence            1     0112234566778776644111           111222222 123444333333322    222345556677


Q ss_pred             hhHHHhHHhhhhhcccceeeee---ec---cc-----ccc--cccccccc---ccccCCcchhhhhccccCC-cch----
Q psy5252         159 LIGLLSEMFRHSLQLGASTLVA---NA---ML-----PSS--LAPSLPFS---SSNSTSLPLVSSLDETAHR-SDE----  217 (285)
Q Consensus       159 ~~G~l~d~~~~~~~~~~~~~~~---~~---~~-----~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~p~-~~r----  217 (285)
                      +.|++.||+++++.........   ..   ..     ...  ........   ..........+...+..++ +.+    
T Consensus       263 ~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~  342 (390)
T TIGR02718       263 GGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDV  342 (390)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHH
Confidence            9999999999987655422111   00   00     000  10110000   0122223334454555554 444    


Q ss_pred             -------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHH
Q psy5252         218 -------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGG  252 (285)
Q Consensus       218 -------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~  252 (285)
                             .++..++|.+.|.+.|+.|++..|...+++.+++.
T Consensus       343 ~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~  384 (390)
T TIGR02718       343 TAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAI  384 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence                   26778999999999999999988887766555543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG2504|consensus

Probab=99.42  E-value=8.1e-14  Score=124.21  Aligned_cols=252  Identities=13%  Similarity=0.068  Sum_probs=157.0

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      +.|+|.+..+.....++..|| ++||+.++|+..++..+|..+-|++..++.+.+| ||+.+++.+.+.+-.++.....-
T Consensus       144 i~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G-~r~~~l~~~~~~l~~~~~~~~~r  221 (509)
T KOG2504|consen  144 IGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYG-WRGALLIFGGISLNVLVAGALLR  221 (509)
T ss_pred             HhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHcC
Confidence            368999999999999999999 5699999999999999999999999999999997 99999999888766665554443


Q ss_pred             cCCcCc------------------------cc-cCcc--c-------------cc-cc--cHHHHH----HHHhhhhhhH
Q psy5252          81 EDPERG------------------------EA-EGRV--T-------------EE-RT--SFGEDI----RALCKNHRET  113 (285)
Q Consensus        81 ~~~~~~------------------------~~-~~~~--~-------------~~-~~--~~~~~~----~~~~~~~~~~  113 (285)
                      |.++..                        .. +.+.  .             ++ ..  ..+...    ..+++++.++
T Consensus       222 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl  301 (509)
T KOG2504|consen  222 PLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFL  301 (509)
T ss_pred             CCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHH
Confidence            411110                        00 0000  0             00 00  111112    3567787776


Q ss_pred             HHHHH-----HH-HHHHHHHH----HHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcc-ccee-eeee
Q psy5252         114 WIFLN-----LN-WSIVADMT----LYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQL-GAST-LVAN  181 (285)
Q Consensus       114 ~~~~~-----~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~-~~~~-~~~~  181 (285)
                      .+...     .. ..|.....    ..+.+..+.+...+..     .+..++|+++.|+++|+...++.. ...+ +..+
T Consensus       302 ~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Sii-----gi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~g  376 (509)
T KOG2504|consen  302 LLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSII-----GVSDIIGRIILGLLADKPGIRALVLFLLTLLIAG  376 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHH-----HHhhhhhhhhhhhhcCccccchHHHHHHHHHHHH
Confidence            52221     11 11222222    2344444444444433     366778899999999998843221 1111 1111


Q ss_pred             cc---cc--cc----ccccccccccccCCcch-hhhhccccCCcch-----------hhhccccchhhhhhhhhhh-hHH
Q psy5252         182 AM---LP--SS----LAPSLPFSSSNSTSLPL-VSSLDETAHRSDE-----------FLAHKSDEFLAHKSDEFLA-LQY  239 (285)
Q Consensus       182 ~~---~~--~~----~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~r-----------~l~~~~~p~~~G~~~~~~~-~~~  239 (285)
                      ..   .+  ..    .....++....+..... ...+.|+++.+.-           .++..+||.+.|++.|..+ |..
T Consensus       377 l~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~  456 (509)
T KOG2504|consen  377 LARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDH  456 (509)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeee
Confidence            11   11  11    12222222222222222 2456677776663           2566899999999999888 999


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q psy5252         240 ALFITSFIEVLGGIFFLLGS  259 (285)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~  259 (285)
                      .|+.+++..+++++++++..
T Consensus       457 ~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  457 AFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             ehhhcChHHHHHHHHHHHhH
Confidence            99999999999998888766

>TIGR00896 CynX cyanate transporter

Probab=99.42  E-value=1.8e-13  Score=117.79  Aligned_cols=155  Identities=16%  Similarity=0.171  Sum_probs=94.4

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC-CchHHHHHhhHHHHHHHHHHHHhc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG-AWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g-~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      +|++.+...+....++.|++| ++|++++++++.+.++|..+++.+.+.+.+..+ +||+.|.+.+++.++...   ...
T Consensus        97 ~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~---~~~  172 (355)
T TIGR00896        97 IGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL---AWI  172 (355)
T ss_pred             HHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH---HHh
Confidence            577777777888889999995 689999999999999999999999999887653 399999877765444322   223


Q ss_pred             cCCcCccccCccccccccHHHHHHHHhhhhhhHHHH-----------HHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhh
Q psy5252          81 EDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIF-----------LNLNWSIVADMTLYVVLPLRRSTAEAFQILISH  149 (285)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (285)
                      ++.+++++++++ .++    ...+..+|+|.++...           ....|.|.+.. ..+.++...+...+.     .
T Consensus       173 ~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~g~~~~~~g~~~~~-----~  241 (355)
T TIGR00896       173 PQVRRRVAANQT-TTR----LTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILI-SHGASAATAGSLLAL-----M  241 (355)
T ss_pred             hhhccccCCCCC-CCC----CCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHH-----H
Confidence            332221111111 010    1123345566554311           12233444332 234443333333332     2


Q ss_pred             hccccchhhhhHHHhHHhhhhh
Q psy5252         150 AFGDAGSPYLIGLLSEMFRHSL  171 (285)
Q Consensus       150 ~~g~~~g~~~~G~l~d~~~~~~  171 (285)
                      .++.+++.++.|+++||+++++
T Consensus       242 ~~~~i~~~~~~g~l~dr~~~~~  263 (355)
T TIGR00896       242 QLAQAASALLIPALARRVKDQR  263 (355)
T ss_pred             HHHHHHHHHhHHHHHhhhccch
Confidence            3667778889999999995443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.40  E-value=1.3e-12  Score=112.77  Aligned_cols=166  Identities=16%  Similarity=0.132  Sum_probs=97.3

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhcc---------CCchHHH-HHhhHHHHH
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVM---------GAWPWSL-RVTPVLGAC   71 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~---------g~wr~~f-~i~~~~~~~   71 (285)
                      +|++.+. .+...++++|++|+|+|+++++++....++|..+++.+++.+....         .+||+.| ++.++...+
T Consensus       101 ~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  179 (366)
T TIGR00886       101 IGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLL  179 (366)
T ss_pred             HHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHH
Confidence            5777554 4667899999999999999999999888888888888877766521         1499999 444555555


Q ss_pred             HHHHHHHhccCCcCccccCcc-ccc------cccHHHHHHHHhhhhhhHHHH-----------HHHHHHHHHHHHHHhcC
Q psy5252          72 AVLLILFFMEDPERGEAEGRV-TEE------RTSFGEDIRALCKNHRETWIF-----------LNLNWSIVADMTLYVVL  133 (285)
Q Consensus        72 ~~~l~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~  133 (285)
                      ..++.....+|.++++.++++ +.+      ++...+..+..+++|.++...           ....+.+.+....++.+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  259 (366)
T TIGR00886       180 PALLIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLS  259 (366)
T ss_pred             HHHHHHHhcccCCcccccchhcccccccccccchhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            555555555554332211111 000      001111345566777665411           12233344333333444


Q ss_pred             CCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcc
Q psy5252         134 PLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQL  173 (285)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~  173 (285)
                      +.+.+......     .+..+++.++.|+++||+++|+..
T Consensus       260 ~~~~~~~~~~~-----~~~~~~~~~~~g~l~~r~g~~~~~  294 (366)
T TIGR00886       260 KVTAGAYASLG-----GLLGSLARPLGGAISDRLGGARKL  294 (366)
T ss_pred             HHHHHHHHHHH-----HHHHHHHhhccchHHHhhccchhH
Confidence            44433332222     244456678999999999997544

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.37  E-value=1.3e-12  Score=114.09  Aligned_cols=243  Identities=9%  Similarity=-0.016  Sum_probs=133.5

Q ss_pred             ccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccC
Q psy5252           3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMED   82 (285)
Q Consensus         3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~   82 (285)
                      |++.+...+...++..|..  +++++.+|......++|.++++.+++.+.+ .+ ||..|++.+++.++..++.....+|
T Consensus       110 g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~-~~~~f~~~~~~~~~~~~~~~~~~~~  185 (396)
T TIGR00882       110 GFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-ID-PQIVFWLGSGFALILMLLLMFAKPK  185 (396)
T ss_pred             HHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cC-chHHHHHHHHHHHHHHHHHHHhCCC
Confidence            4445555566666665543  334567788888899999999999998876 44 9999999988887776555544555


Q ss_pred             CcCccccCcc--ccccccHHHHHHHHhhhhhhHHHHHH-----------HHHHHHHHHHHHhcCCCCcc-hhHHHHHHHh
Q psy5252          83 PERGEAEGRV--TEERTSFGEDIRALCKNHRETWIFLN-----------LNWSIVADMTLYVVLPLRRS-TAEAFQILIS  148 (285)
Q Consensus        83 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  148 (285)
                      +++++..++.  .++++...++.++.+|+|.++.....           ..|.+.+... +..+ ...+ ...+....+ 
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~-~~~~-~~~~~~~~g~~~~~-  262 (396)
T TIGR00882       186 APSSATVANALGANASAFSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTS-FFAT-PQQGTRVFGYVTTM-  262 (396)
T ss_pred             CchhhhhhcccccccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccc-cccchHHHHHHHHH-
Confidence            4332211110  01111122456778888887542111           1122222211 1111 1111 122322222 


Q ss_pred             hhccccchhhhhHHHhHHhhhhhcccceeee--e---ecccc-cc--ccccccccccccCCcch-----hhhhccccCCc
Q psy5252         149 HAFGDAGSPYLIGLLSEMFRHSLQLGASTLV--A---NAMLP-SS--LAPSLPFSSSNSTSLPL-----VSSLDETAHRS  215 (285)
Q Consensus       149 ~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~---~~~~~-~~--~~~~~~~~~~~~~~~~~-----~~~~~~~~p~~  215 (285)
                      ..+...++....|++.||+++|+........  +   .+... ..  +.....+.   +...|.     .....+..|++
T Consensus       263 ~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~---g~~~~~~~~~~~~~~~~~~~~~  339 (396)
T TIGR00882       263 GELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLH---AFEVPFLLVGCFKYITSQFDVR  339 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH---HHHHHHHHHHHHHHHHHhCCcc
Confidence            2233444567889999999999765442211  1   11111 11  11111110   111121     12334555666


Q ss_pred             ch------------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy5252         216 DE------------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFF  255 (285)
Q Consensus       216 ~r------------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (285)
                      .+            .+|..++|.+.|++.|..|++.+|.+.+++..++.+.-
T Consensus       340 ~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~  391 (396)
T TIGR00882       340 LSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS  391 (396)
T ss_pred             eEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            54            14678999999999999999999988777766665543

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.36  E-value=5.1e-12  Score=104.87  Aligned_cols=228  Identities=13%  Similarity=0.116  Sum_probs=140.6

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      .|.|.+..++..+++|.+.|| ||-+..+|+|....++|.++++.++-.+.++.++||.....-+.++++..+.+.... 
T Consensus       109 ~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~-  186 (395)
T COG2807         109 AGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQA-  186 (395)
T ss_pred             HHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhc-
Confidence            578888889999999999995 589999999999999999999999999999885699999999999888776654442 


Q ss_pred             CCcCccccCccccccccHHHHHHHHhhhhhhHH-----------HHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhh
Q psy5252          82 DPERGEAEGRVTEERTSFGEDIRALCKNHRETW-----------IFLNLNWSIVADMTLYVVLPLRRSTAEAFQILISHA  150 (285)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (285)
                        .|++..+.+. +.    .....++|+|.-|.           .++...|.|.+.. +.++++++.|...+... +...
T Consensus       187 --~r~~~~~~~~-~~----~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~-l~~~  257 (395)
T COG2807         187 --LREQAASIAT-KL----VSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQ-LAQL  257 (395)
T ss_pred             --cccccccccc-cc----ccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHH-HHHH
Confidence              2211111110 00    11123566665443           5567788888744 56888888887777443 3333


Q ss_pred             ccccchhhhhHHHhHHhhhhhccccee---e---eeecccccc---cccccccccc-ccCCcchhhhhccccCCcch---
Q psy5252         151 FGDAGSPYLIGLLSEMFRHSLQLGAST---L---VANAMLPSS---LAPSLPFSSS-NSTSLPLVSSLDETAHRSDE---  217 (285)
Q Consensus       151 ~g~~~g~~~~G~l~d~~~~~~~~~~~~---~---~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~r---  217 (285)
                      ....    ..-.+.+|...++......   .   ..++.+.+.   +...+.+..+ .+.++.....+.+..+..+.   
T Consensus       258 ~~~l----l~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~  333 (395)
T COG2807         258 PTAL----LIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAA  333 (395)
T ss_pred             HHHH----HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHH
Confidence            4444    4445555543333222211   1   122222222   1222333333 33333334445544443332   


Q ss_pred             ------hhh---ccccchhhhhhhhhhh-hHHHHHHH
Q psy5252         218 ------FLA---HKSDEFLAHKSDEFLA-LQYALFIT  244 (285)
Q Consensus       218 ------~l~---~~~~p~~~G~~~~~~~-~~~~~~~~  244 (285)
                            .+|   .+.||++.|.+.|..| |+..+...
T Consensus       334 LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l  370 (395)
T COG2807         334 LSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLL  370 (395)
T ss_pred             HHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHH
Confidence                  133   3899999999999887 77665543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.35  E-value=4.3e-12  Score=106.72  Aligned_cols=242  Identities=14%  Similarity=0.061  Sum_probs=146.8

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhc------------------cCCchHHHH
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSV------------------MGAWPWSLR   63 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~------------------~g~wr~~f~   63 (285)
                      .|.|.+...+.++.+++..-++++..+.+++.+..+++|.+++|.+++.+..+                  ..+||++|.
T Consensus       114 la~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl  193 (422)
T COG0738         114 LASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYL  193 (422)
T ss_pred             HHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHH
Confidence            46788888999999999999999999999999999999999999999998873                  124888888


Q ss_pred             HhhHHHHHHHHHHHHhccCCcCccccCccccccccHHHHHHHHhhhhhhHHHH-----------HHHHHHHHHHHHHHhc
Q psy5252          64 VTPVLGACAVLLILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIF-----------LNLNWSIVADMTLYVV  132 (285)
Q Consensus        64 i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~  132 (285)
                      +.+...++..+. ....|.|+.+..+++..+.+ +  ......+++|.+++..           ....|.+.+.....+.
T Consensus       194 ~~~~~lvll~v~-~~~~k~p~~~~~~~~~~~~~-~--~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~  269 (422)
T COG0738         194 ILAGLLVLLAVL-ILLSKLPDLQVAAPSLGASG-S--AGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGL  269 (422)
T ss_pred             HHHHHHHHHHHH-HHhccCCcCCcccccccccc-c--chHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCc
Confidence            887766555433 33444333322222211111 1  1456677888776611           1334455544433333


Q ss_pred             CCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhccccee-----eeeecccccc-cc--ccccccccccCCcc-
Q psy5252         133 LPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGAST-----LVANAMLPSS-LA--PSLPFSSSNSTSLP-  203 (285)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~-----~~~~~~~~~~-~~--~~~~~~~~~~~~~~-  203 (285)
                      +..+.....+..     ..+.++|+.++.++..|+...+.....+     +.+...+.+. +.  ........++..-| 
T Consensus       270 ~~~~aa~~~s~~-----~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~~~l~~ig~F~simfPT  344 (422)
T COG0738         270 NEQQAAYYLSFF-----WVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVALYALFLIGLFNSIMFPT  344 (422)
T ss_pred             cHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhHHHHHH
Confidence            333333333333     3777888888888888888876554422     1111111211 11  11111112233333 


Q ss_pred             hhhhhccccCCcch---------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHH
Q psy5252         204 LVSSLDETAHRSDE---------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGG  252 (285)
Q Consensus       204 ~~~~~~~~~p~~~r---------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~  252 (285)
                      ..+.-.+..|++..         -.|+++-|.+.|++.|+.|.+..+......+.+..
T Consensus       345 Ifslal~~l~~~ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV  402 (422)
T COG0738         345 IFSLALKNLGEHTSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV  402 (422)
T ss_pred             HHHHHHhccCccccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            35555566663332         15779999999999999998877664455444444

>PRK09669 putative symporter YagG; Provisional

Probab=99.28  E-value=1.6e-11  Score=108.91  Aligned_cols=228  Identities=14%  Similarity=0.126  Sum_probs=125.9

Q ss_pred             ccccccchhHHHHhhcc-cCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC------CchHHHHHhhHHHHHHHHHHH
Q psy5252           5 GEASYSTIAPTIISDLF-VKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG------AWPWSLRVTPVLGACAVLLIL   77 (285)
Q Consensus         5 g~~~~~~~~~~~i~~~~-~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g------~wr~~f~i~~~~~~~~~~l~~   77 (285)
                      +......+-.++.+|+. +++||.+..++.....++|..+++.+...+...++      +|+..+.+.++++++..+..+
T Consensus       122 ~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~  201 (444)
T PRK09669        122 VYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCF  201 (444)
T ss_pred             HHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHh
Confidence            33445556678888988 45789999999988888888887766554443221      388888888887776665555


Q ss_pred             HhccCCcCccccCccccccccHHHHHHHHhhhhhhHHHHHHH-----HHHHHHHHHHHhcCCCCcchhHHHHHHHhhhcc
Q psy5252          78 FFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFLNL-----NWSIVADMTLYVVLPLRRSTAEAFQILISHAFG  152 (285)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  152 (285)
                      +..||.++++  +   +++.+.++.++..+++|.++......     ..........+....................+.
T Consensus       202 ~~~~e~~~~~--~---~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~  276 (444)
T PRK09669        202 FMTKERYTPE--V---DNSSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIA  276 (444)
T ss_pred             CCeEEecCCC--C---cCCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHH
Confidence            5555543221  1   12344667788889999876632211     111100111111111110111111222233355


Q ss_pred             ccchhhhhHHHhHHhhhhhcccceee--e---e-eccccc-c---c-ccccccccc-ccCCcchhhhhccccCCcc----
Q psy5252         153 DAGSPYLIGLLSEMFRHSLQLGASTL--V---A-NAMLPS-S---L-APSLPFSSS-NSTSLPLVSSLDETAHRSD----  216 (285)
Q Consensus       153 ~~~g~~~~G~l~d~~~~~~~~~~~~~--~---~-~~~~~~-~---~-~~~~~~~~~-~~~~~~~~~~~~~~~p~~~----  216 (285)
                      .+++.++.++++||+++|+.......  .   . .+..+. .   + ........+ ........++++|.++.++    
T Consensus       277 ~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G  356 (444)
T PRK09669        277 GLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSG  356 (444)
T ss_pred             HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Confidence            55667788999999999876554221  1   0 111111 1   1 111111212 2233335677888876322    


Q ss_pred             -h-----h--------hhccccchhhhhhhhhhhh
Q psy5252         217 -E-----F--------LAHKSDEFLAHKSDEFLAL  237 (285)
Q Consensus       217 -r-----~--------l~~~~~p~~~G~~~~~~~~  237 (285)
                       |     +        +|.++||.+.|.+.|..|+
T Consensus       357 ~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        357 RRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence             2     0        6678999999999887766

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.27  E-value=2.2e-11  Score=108.97  Aligned_cols=79  Identities=15%  Similarity=0.316  Sum_probs=65.4

Q ss_pred             CcccccccccchhHHHHhhcccCC--chhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHH
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKD--LRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILF   78 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~--~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~   78 (285)
                      ++|+|.|...|...++++|++|++  +|++++++++.+.++|..+||.+++++.+++| ||+.|++.++. ++..++.+.
T Consensus       114 l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g-w~~~F~i~~i~-~~~~~~~~~  191 (489)
T PRK10207        114 TIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFG-YSVTYNLCGAG-LIIALLVYF  191 (489)
T ss_pred             HHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC-hHHHHHHHHHH-HHHHHHHHH
Confidence            368999999999999999999887  45789999999999999999999999999996 99999987653 333334444


Q ss_pred             hcc
Q psy5252          79 FME   81 (285)
Q Consensus        79 ~~~   81 (285)
                      ..+
T Consensus       192 ~~~  194 (489)
T PRK10207        192 ACR  194 (489)
T ss_pred             Hcc
Confidence            444

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.26  E-value=4e-11  Score=106.44  Aligned_cols=247  Identities=9%  Similarity=0.050  Sum_probs=152.9

Q ss_pred             cccccchhHHHHhhcccCCch--------------------------hHHHHHHHHHHhhHHHHHHHHHHHhhhccCC--
Q psy5252           6 EASYSTIAPTIISDLFVKDLR--------------------------SQMLAFFYFAIPIGSGLGYIVGSTAFSVMGA--   57 (285)
Q Consensus         6 ~~~~~~~~~~~i~~~~~~~~r--------------------------g~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~--   57 (285)
                      .+.......+++.|..+++++                          ++..+.-.....+|..+...+.-.+....++  
T Consensus       140 ~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~  219 (477)
T PF11700_consen  140 YEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTA  219 (477)
T ss_pred             HHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence            344556678899999999988                          9999999999999999888887776543332  


Q ss_pred             -----chHHHHHhhHHHHHHHHHHHHhccCCcCccccCc-cc---cccccHHHHHHHHhhhhhhHHHHH-----------
Q psy5252          58 -----WPWSLRVTPVLGACAVLLILFFMEDPERGEAEGR-VT---EERTSFGEDIRALCKNHRETWIFL-----------  117 (285)
Q Consensus        58 -----wr~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~-----------  117 (285)
                           -|..+.+.++--++..+..++++||.++++..+. ..   ..-++..+.++...+.|....+..           
T Consensus       220 ~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~t  299 (477)
T PF11700_consen  220 SNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNT  299 (477)
T ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence                 4888888888888888888888887665322111 11   111234455666666666544221           


Q ss_pred             HHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhh--hccccee------eeeecc------
Q psy5252         118 NLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHS--LQLGAST------LVANAM------  183 (285)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~--~~~~~~~------~~~~~~------  183 (285)
                      .......+.....+++..+.    . ...+...+..++|.++.|++.||+|.|  +.+....      ...++.      
T Consensus       300 i~~~~~i~a~~~lg~s~~~l----~-~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~  374 (477)
T PF11700_consen  300 IISFAGIYATEVLGMSTTQL----I-VFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSF  374 (477)
T ss_pred             HHHHHHHHHHHhcCcCHHHH----H-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            11112223233344444332    2 222222355566788999999999999  4333211      001111      


Q ss_pred             --cccc---cccccccccc-ccCCcchhhhhccccCCcch--h---------hhccccchhhhhhhhhhh-hHHHHHHHH
Q psy5252         184 --LPSS---LAPSLPFSSS-NSTSLPLVSSLDETAHRSDE--F---------LAHKSDEFLAHKSDEFLA-LQYALFITS  245 (285)
Q Consensus       184 --~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~r--~---------l~~~~~p~~~G~~~~~~~-~~~~~~~~~  245 (285)
                        ....   +.++...+.. ++..+...++.+|+.|+++.  +         ....+||.+.|.+.|..| .|+++....
T Consensus       375 ~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~  454 (477)
T PF11700_consen  375 FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLL  454 (477)
T ss_pred             cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence              1111   2333333222 23333346889999999887  2         334899999999999987 899998877


Q ss_pred             HHHHHHHHHHHH
Q psy5252         246 FIEVLGGIFFLL  257 (285)
Q Consensus       246 ~~~~~~~~~~~~  257 (285)
                      ++.+++.+++..
T Consensus       455 ~lf~~gl~ll~~  466 (477)
T PF11700_consen  455 VLFLIGLILLFF  466 (477)
T ss_pred             HHHHHHHHHHhh
Confidence            777777776644

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.25  E-value=2.5e-11  Score=109.11  Aligned_cols=69  Identities=17%  Similarity=0.343  Sum_probs=59.6

Q ss_pred             cccccccccchhHHHHhhcccCCc--hhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHH
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDL--RSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGAC   71 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~--rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~   71 (285)
                      +|++.|...+...++++|++|+++  |..++++++.+.++|..+||.+++++.+.+| ||+.|.+.++...+
T Consensus       122 ~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g-~~~~F~i~~i~~~i  192 (500)
T PRK09584        122 IAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYG-WSVAFALSVVGMLI  192 (500)
T ss_pred             HHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHH
Confidence            578888889999999999998654  4568999999999999999999999999886 99999988754443

>KOG0252|consensus

Probab=99.19  E-value=8.2e-12  Score=106.46  Aligned_cols=265  Identities=13%  Similarity=0.076  Sum_probs=163.6

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC--------------CchHHHHHhh
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG--------------AWPWSLRVTP   66 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g--------------~wr~~f~i~~   66 (285)
                      ++|+|.|+-+|...++.+|...+++||..++...+.+..|...|.+++-.+...+.              =||..|.+..
T Consensus       153 ~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~  232 (538)
T KOG0252|consen  153 LLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGA  232 (538)
T ss_pred             HhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999998888888877664321              1999999888


Q ss_pred             HHHHHHHHHHHHhccCCcCcccc--Cc---------c--cc----------ccccHHHHHH----HHhhhhhhHHHHHHH
Q psy5252          67 VLGACAVLLILFFMEDPERGEAE--GR---------V--TE----------ERTSFGEDIR----ALCKNHRETWIFLNL  119 (285)
Q Consensus        67 ~~~~~~~~l~~~~~~~~~~~~~~--~~---------~--~~----------~~~~~~~~~~----~~~~~~~~~~~~~~~  119 (285)
                      ++++... ..+..+||+++....  ++         +  ..          ......+..+    ...+.....++....
T Consensus       233 vpa~~~l-y~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~  311 (538)
T KOG0252|consen  233 VPALLVL-YFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAG  311 (538)
T ss_pred             HHHHHHH-HhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHH
Confidence            8776654 778888998764310  00         0  00          0000011111    111111111133344


Q ss_pred             HHHHH------------HHHHHHhcCCCCcch----hHHHHHHHhhhccccchhhhhHHHhHHhhhhhccccee------
Q psy5252         120 NWSIV------------ADMTLYVVLPLRRST----AEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGAST------  177 (285)
Q Consensus       120 ~~~~~------------~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~------  177 (285)
                      .|...            ......+..+.....    ..+....+...++.+.|.++...++|++||+..-...+      
T Consensus       312 ~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~  391 (538)
T KOG0252|consen  312 TWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIF  391 (538)
T ss_pred             HHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHH
Confidence            44321            001112333333222    23444556667888888999999999999997544422      


Q ss_pred             -eeeecccc-c--c--ccccccccc---cccCCcchhhhhccccCCcchh-----------hhccccchhhhhhhh----
Q psy5252         178 -LVANAMLP-S--S--LAPSLPFSS---SNSTSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDE----  233 (285)
Q Consensus       178 -~~~~~~~~-~--~--~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~----  233 (285)
                       +.+++.+. .  .  ..+...+..   -.+.++.+....+|.+|++.|.           .|..++....+++.+    
T Consensus       392 ~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp  471 (538)
T KOG0252|consen  392 FFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYP  471 (538)
T ss_pred             HHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCC
Confidence             11222222 1  1  111111111   1344444566778999999993           555788888889998    


Q ss_pred             -hhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy5252         234 -FLALQYALFITSFIEVLGGIFFLLGSLYIVQDR  266 (285)
Q Consensus       234 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (285)
                       ..+.+.+|++...++.++.+.-++......|+.
T Consensus       472 ~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~l  505 (538)
T KOG0252|consen  472 PNIGVRNVFIILAGCMLLGILFTLLIPETKGKSL  505 (538)
T ss_pred             ccccchHHHHHHHHHHHHhHheeEEeecccccCH
Confidence             788999999988888888777666554444433

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.19  E-value=8.8e-11  Score=105.06  Aligned_cols=232  Identities=8%  Similarity=0.018  Sum_probs=122.6

Q ss_pred             ccccccchhHHHHhhcc-cCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC------CchHHHHHhhHHHHHHHHHHH
Q psy5252           5 GEASYSTIAPTIISDLF-VKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG------AWPWSLRVTPVLGACAVLLIL   77 (285)
Q Consensus         5 g~~~~~~~~~~~i~~~~-~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g------~wr~~f~i~~~~~~~~~~l~~   77 (285)
                      +.....+.-.++++|+. +++||.+..++.....++|..+.+.+...+.+.++      +|+....+.+++.++..+...
T Consensus       119 ~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~  198 (473)
T PRK10429        119 TYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITL  198 (473)
T ss_pred             HHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            34455566778889988 58899999999777778776666555544332221      266666666666665555555


Q ss_pred             HhccCCcCccccCccccccccHHHHHHHHhhhhhhHHHHHHH--HHHHHHH---HHHHhcCCC-CcchhHHHHHHHhhhc
Q psy5252          78 FFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFLNL--NWSIVAD---MTLYVVLPL-RRSTAEAFQILISHAF  151 (285)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~  151 (285)
                      +..||.+++..++.+++++.+.++.++.+++||.++......  .+.....   ...+..... ......+... ....+
T Consensus       199 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~-~~~~i  277 (473)
T PRK10429        199 RNVHEVYSSDNQVSAEGSHLTLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYL-SYAGA  277 (473)
T ss_pred             cCceecCCccccccccccCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHH-HHHHH
Confidence            556664322111111223345778888888888876533211  1111110   101111100 0011122121 22224


Q ss_pred             cccchhhhhHHHhHHhhhhhcccceee--e-----eec---ccccc---cc-cccccc-ccccCCcchhhhhccccCC--
Q psy5252         152 GDAGSPYLIGLLSEMFRHSLQLGASTL--V-----ANA---MLPSS---LA-PSLPFS-SSNSTSLPLVSSLDETAHR--  214 (285)
Q Consensus       152 g~~~g~~~~G~l~d~~~~~~~~~~~~~--~-----~~~---~~~~~---~~-~~~~~~-~~~~~~~~~~~~~~~~~p~--  214 (285)
                      +.+++.++.++++||+++|+.......  +     ..+   ..+..   +. ...+.. ..........++++|..+.  
T Consensus       278 ~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e  357 (473)
T PRK10429        278 ANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGE  357 (473)
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            556667789999999999976643211  0     000   11111   11 111111 1123334456778888664  


Q ss_pred             ---cchh-------------hhccccchhhhhhhhhhhh
Q psy5252         215 ---SDEF-------------LAHKSDEFLAHKSDEFLAL  237 (285)
Q Consensus       215 ---~~r~-------------l~~~~~p~~~G~~~~~~~~  237 (285)
                         ..|.             ++.++++.+.|.+.+..|+
T Consensus       358 ~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        358 YKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence               3340             5668899999988876655

>TIGR00889 2A0110 nucleoside transporter

Probab=99.15  E-value=2.3e-11  Score=107.06  Aligned_cols=217  Identities=12%  Similarity=-0.007  Sum_probs=111.6

Q ss_pred             hhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccCCcCccccCccccccccHHHHHHHHhhhhhhHHHHH
Q psy5252          38 PIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL  117 (285)
Q Consensus        38 ~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (285)
                      .+|.++++.+++.+.... +|+ +|++.+++.++..+ ..+.+||+++++.+++.+ .++......+..+|+|.+++...
T Consensus       140 ~lG~~ig~~l~g~l~~~~-~~~-~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~~k~~~~~~~~~  215 (418)
T TIGR00889       140 TIGFIAAMWAVSLLDIEL-SNI-QLYITAGSSALLGV-FALTLPDIPVAKSTAKMS-IKVMLGLDAFILFKNKRMAIFFF  215 (418)
T ss_pred             hHHHHHHHHHHHHhcccc-hhH-HHHHHHHHHHHHHH-HHhcCCCCCCCccccccC-HHHHhhhhHHHHhcCCCeeeHHH
Confidence            478888999988884322 254 46666666655553 345667764322111111 11111123445778887654221


Q ss_pred             H--HHHH-----HHH---HHHHHhcCCCCc---c-hhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee--e-
Q psy5252         118 N--LNWS-----IVA---DMTLYVVLPLRR---S-TAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV--A-  180 (285)
Q Consensus       118 ~--~~~~-----~~~---~~~~~~~~~~~~---~-~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~-  180 (285)
                      .  ....     ..+   .....+.++...   + ...+ .......++.+++.+..|+++||+++|+......+.  + 
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g-~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~  294 (418)
T TIGR00889       216 FSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNAS-IWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALR  294 (418)
T ss_pred             HHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            1  1100     011   111222222111   1 1112 222222355566678999999999999866553211  1 


Q ss_pred             ----ecccc-c---c-cccc-ccccccc-cCCcchhhhhccccCCcchh------------hhccccchhhhhhhhhh--
Q psy5252         181 ----NAMLP-S---S-LAPS-LPFSSSN-STSLPLVSSLDETAHRSDEF------------LAHKSDEFLAHKSDEFL--  235 (285)
Q Consensus       181 ----~~~~~-~---~-~~~~-~~~~~~~-~~~~~~~~~~~~~~p~~~r~------------l~~~~~p~~~G~~~~~~--  235 (285)
                          ..... .   . +.+. .....+. .........+.|.+|++.|.            ++..+||.+.|.+.|+.  
T Consensus       295 ~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~  374 (418)
T TIGR00889       295 FGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFA  374 (418)
T ss_pred             HHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence                11111 1   1 1111 1111111 22233356688999998871            45579999999999984  


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHHh
Q psy5252         236 ----ALQYALFITSFIEVLGGIFFLLGS  259 (285)
Q Consensus       236 ----~~~~~~~~~~~~~~~~~~~~~~~~  259 (285)
                          ||+.++...+++.++..+++....
T Consensus       375 ~~~~~~~~~f~~~~~~~~i~~~l~~~~~  402 (418)
T TIGR00889       375 YGTFDWQTMWLFFAGYIAILAVLFMIFF  402 (418)
T ss_pred             ccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence                588888877777666665555443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.13  E-value=4.3e-10  Score=100.55  Aligned_cols=71  Identities=15%  Similarity=0.342  Sum_probs=62.7

Q ss_pred             cccccccccchhHHHHhhcccCCc---hhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHH
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDL---RSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAV   73 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~---rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~   73 (285)
                      .|+|.+...|+..++++|++|+++   |++++++++.+.++|.++|+.+++++.+.++ ||+.|.+.++..++..
T Consensus       112 ~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g-~~~~f~~~~~~~~~~~  185 (475)
T TIGR00924       112 IAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG-YHVGFNLAAVGMVIGL  185 (475)
T ss_pred             HHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHH
Confidence            578899999999999999998864   8889999999999999999999999999886 9999998886554443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00788 fbt folate/biopterin transporter

Probab=99.12  E-value=2e-11  Score=108.86  Aligned_cols=226  Identities=12%  Similarity=0.060  Sum_probs=125.9

Q ss_pred             ccccccccchhHHHHhhcccCCchhHH---HHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHh
Q psy5252           3 GIGEASYSTIAPTIISDLFVKDLRSQM---LAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFF   79 (285)
Q Consensus         3 G~g~~~~~~~~~~~i~~~~~~~~rg~~---~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~   79 (285)
                      +++.+...+++-++..|..+ |++...   .++.....++|.++++.+++.+.+.++ ||..|++.+.+.++. .+...+
T Consensus       131 ~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~-~~~~f~~~a~l~ll~-~~~~~~  207 (468)
T TIGR00788       131 ALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTL-TRILFLITAALLLLQ-LFVSNL  207 (468)
T ss_pred             HHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcC-cchHHHHHHHHHHHH-HHHHHh
Confidence            45556667788889999998 555543   344445556899999999999999886 999999998887766 344566


Q ss_pred             ccCCcCc-cccCccc---------c----ccccHHHHHHHHhhhhhhHHHHH--HHHHHH--H-------HHHHHHhcCC
Q psy5252          80 MEDPERG-EAEGRVT---------E----ERTSFGEDIRALCKNHRETWIFL--NLNWSI--V-------ADMTLYVVLP  134 (285)
Q Consensus        80 ~~~~~~~-~~~~~~~---------~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~-------~~~~~~~~~~  134 (285)
                      ++|++.. ..+..++         .    ...+.....+..+++|..+....  +..+..  .       +.....+.++
T Consensus       208 ~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~~~~f~~~~~~lG~s~  287 (468)
T TIGR00788       208 SKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGASGSVFCATTQCLPGGP  287 (468)
T ss_pred             cccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCCceeEEEEcccCCCCc
Confidence            7775411 1110000         0    00111123444566676654222  221111  0       0011234455


Q ss_pred             CCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee--eec-----cc---------ccc-ccccc--ccc
Q psy5252         135 LRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV--ANA-----ML---------PSS-LAPSL--PFS  195 (285)
Q Consensus       135 ~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~~-----~~---------~~~-~~~~~--~~~  195 (285)
                      +..|...+...     ++.+++..+.+++.+|++.|+......+.  ++.     ..         +.. +..+.  +-.
T Consensus       288 ~~~G~~~~~~~-----v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~  362 (468)
T TIGR00788       288 SFSGMSKVVGN-----LGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAE  362 (468)
T ss_pred             chhhhHHHHHH-----HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHH
Confidence            55555544322     55555666777776676666543331111  000     00         000 01110  000


Q ss_pred             -ccccCCcchhhhhccccCCcch-----------hhhccccchhhhhhhhhhh
Q psy5252         196 -SSNSTSLPLVSSLDETAHRSDE-----------FLAHKSDEFLAHKSDEFLA  236 (285)
Q Consensus       196 -~~~~~~~~~~~~~~~~~p~~~r-----------~l~~~~~p~~~G~~~~~~~  236 (285)
                       .......|....+++.+|++.+           .+|..+++.++|.+.++.|
T Consensus       363 ~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       363 VLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence             1123445567888899999986           2777899999999998877

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG3626|consensus

Probab=99.10  E-value=3.8e-10  Score=102.51  Aligned_cols=166  Identities=18%  Similarity=0.231  Sum_probs=127.3

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC------------------CchHHH
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG------------------AWPWSL   62 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g------------------~wr~~f   62 (285)
                      +.|+|..+.++.+.+|+.|.+.+++-...+|++++...+|+++|.++++++.+.|.                  -|...|
T Consensus       246 l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGF  325 (735)
T KOG3626|consen  246 LLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGF  325 (735)
T ss_pred             HhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHH
Confidence            46999999999999999999999999999999999999999999999999988653                  277779


Q ss_pred             HHhhHHHHHHHHHHHHhccCCcCccc-----cC---ccc----c-------ccccHHHHHHHHhhhhhhHH---------
Q psy5252          63 RVTPVLGACAVLLILFFMEDPERGEA-----EG---RVT----E-------ERTSFGEDIRALCKNHRETW---------  114 (285)
Q Consensus        63 ~i~~~~~~~~~~l~~~~~~~~~~~~~-----~~---~~~----~-------~~~~~~~~~~~~~~~~~~~~---------  114 (285)
                      ++.+.+.++..+.++++.++.++..+     +.   +.+    +       +-+++...++.+++||.+..         
T Consensus       326 Li~g~~~~~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~  405 (735)
T KOG3626|consen  326 LICGALLLFSAVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIES  405 (735)
T ss_pred             HHHHHHHHHHHHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence            99999999988888777766554321     00   000    0       11234556777888888865         


Q ss_pred             --HHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhh
Q psy5252         115 --IFLNLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHS  170 (285)
Q Consensus       115 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~  170 (285)
                        +..+..+.|.|...+++.++..++...+...    +.+..+|.+++|.+..|+.-+
T Consensus       406 ~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~----vp~~~~Gi~lGG~iikkfkl~  459 (735)
T KOG3626|consen  406 LAITGYITFLPKYLETQFGISASLANILTGSIG----VPAAAVGIFLGGLIIKKFKLS  459 (735)
T ss_pred             HHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhh----hhhhhhhhhccceeeeeeccc
Confidence              2235667888999999999988888877665    344555667899999887654

>KOG0569|consensus

Probab=99.03  E-value=5.8e-10  Score=97.97  Aligned_cols=83  Identities=19%  Similarity=0.419  Sum_probs=68.3

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHH-HhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGS-TAFSVMGAWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~-~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      .|+..+.......-++.|..|++.||..-.+.+.+.++|..++..++. .+......|++.+....+++++.. +...++
T Consensus       126 ~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l-~~l~~~  204 (485)
T KOG0569|consen  126 VGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQL-ALLPFL  204 (485)
T ss_pred             HHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHH-HHHhcC
Confidence            578888888999999999999999999999999999999999977753 344333359999998888887766 555788


Q ss_pred             cCCcC
Q psy5252          81 EDPER   85 (285)
Q Consensus        81 ~~~~~   85 (285)
                      ||.|+
T Consensus       205 PESPk  209 (485)
T KOG0569|consen  205 PESPK  209 (485)
T ss_pred             CCCcc
Confidence            88775

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.02  E-value=3.6e-10  Score=99.86  Aligned_cols=227  Identities=16%  Similarity=0.160  Sum_probs=136.4

Q ss_pred             cccccccchhHHHHhhcccC-CchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC------CchHHHHHhhHHHHHHHHHH
Q psy5252           4 IGEASYSTIAPTIISDLFVK-DLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG------AWPWSLRVTPVLGACAVLLI   76 (285)
Q Consensus         4 ~g~~~~~~~~~~~i~~~~~~-~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g------~wr~~f~i~~~~~~~~~~l~   76 (285)
                      ++.......-.++.+|+.++ |||.+..+....+..+|..+...+.+.+.+..+      +|++...+.+++.++..++.
T Consensus       115 ~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~  194 (428)
T PF13347_consen  115 IAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLIT  194 (428)
T ss_pred             HhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhh
Confidence            34455666778899999984 789999999999999999877777777775443      49999999998888888788


Q ss_pred             HHhccCCcCccccCccccccccHHHHHHHHhhhhhhHHHHHH-----HHHH----HHHHHHHHhcCCCCcchhHHHHHHH
Q psy5252          77 LFFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFLN-----LNWS----IVADMTLYVVLPLRRSTAEAFQILI  147 (285)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  147 (285)
                      .+..||.+++.   ++++++.+.++.++.++++|.+......     ..+.    ...+...+....+..   .+.... 
T Consensus       195 ~~~~ke~~~~~---~~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~---~~~~~~-  267 (428)
T PF13347_consen  195 FFFVKERSVEV---TEQEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGL---ISIFML-  267 (428)
T ss_pred             hheeeeccccc---cccccccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchh---hHHHHH-
Confidence            77878722211   1123344567778888999887652211     1111    111122233322221   111111 


Q ss_pred             hhhccccchhhhhHHHhHHhhhhhcccceeee------eecccc--cc-c--ccccccc-ccccCCcchhhhhccccCCc
Q psy5252         148 SHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV------ANAMLP--SS-L--APSLPFS-SSNSTSLPLVSSLDETAHRS  215 (285)
Q Consensus       148 ~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~------~~~~~~--~~-~--~~~~~~~-~~~~~~~~~~~~~~~~~p~~  215 (285)
                      ...++.+++.++.++++||+|+|+........      .....+  +. +  ....... .....+....++++|..+.+
T Consensus       268 ~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~  347 (428)
T PF13347_consen  268 IFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYD  347 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhH
Confidence            22355566677899999999999866553211      111121  22 1  1111111 12344455678888887754


Q ss_pred             c-----h--h-----------hhccccchhhhhhhhhhhh
Q psy5252         216 D-----E--F-----------LAHKSDEFLAHKSDEFLAL  237 (285)
Q Consensus       216 ~-----r--~-----------l~~~~~p~~~G~~~~~~~~  237 (285)
                      +     |  .           ++.++++.+.|.+.+..|+
T Consensus       348 e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy  387 (428)
T PF13347_consen  348 EWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY  387 (428)
T ss_pred             HHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence            3     2  0           5567888888887765554

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.02  E-value=2.4e-12  Score=114.39  Aligned_cols=84  Identities=19%  Similarity=0.352  Sum_probs=69.6

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC--CchHHHHHhhHHHHHHHHHHHH
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG--AWPWSLRVTPVLGACAVLLILF   78 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g--~wr~~f~i~~~~~~~~~~l~~~   78 (285)
                      ++|++.|...+....++.|..|+++|++..++.+....+|..++..++..+....+  .||..+.+..+++++.. +...
T Consensus       111 ~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~-~~~~  189 (451)
T PF00083_consen  111 LIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVL-LLRF  189 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence            57999999999999999999999999999999999999999998888766633221  39999998888887655 4457


Q ss_pred             hccCCcC
Q psy5252          79 FMEDPER   85 (285)
Q Consensus        79 ~~~~~~~   85 (285)
                      ++||.|+
T Consensus       190 ~~pESP~  196 (451)
T PF00083_consen  190 FLPESPR  196 (451)
T ss_pred             ccccccc
Confidence            7888764

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.01  E-value=3.3e-09  Score=90.21  Aligned_cols=227  Identities=15%  Similarity=0.175  Sum_probs=131.1

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchH--HHHHhhHHHHHHHHHHHHh
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW--SLRVTPVLGACAVLLILFF   79 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~--~f~i~~~~~~~~~~l~~~~   79 (285)
                      .|+|.+...++..++++|..|+|+|+++.++..+...+|.+++..+.+.+.+.+..-|.  .+...+++.++..++. .+
T Consensus        99 ~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l~~ia-~w  177 (403)
T PF03209_consen   99 YGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALLLNLIA-LW  177 (403)
T ss_pred             HHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence            58888999999999999999999999999999999999999999999999987642222  2333333333333222 23


Q ss_pred             ccCCcCccccCccccccccHHHHHHHHhhhhhhHHHHHHHHHHHH-HHHH----------HHhcCCCCcchhHHHHHHHh
Q psy5252          80 MEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFLNLNWSIV-ADMT----------LYVVLPLRRSTAEAFQILIS  148 (285)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------~~~~~~~~~~~~~~~~~~~~  148 (285)
                      -.|++.++..+.+++++.++++.+++++.+|....++.+...... +...          .++++..+-....+..    
T Consensus       178 g~E~r~~~~~~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~----  253 (403)
T PF03209_consen  178 GQEPRRSRRAAAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFW----  253 (403)
T ss_pred             hcccCCcccccCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHH----
Confidence            345544433333345667788999999988876554433332221 2122          2344444333333322    


Q ss_pred             hhccccchhhhhHHHhH-Hhhhhhcccceee--eeecc-------c-ccc-cccc-ccccccccCCcc-hhhhhccccCC
Q psy5252         149 HAFGDAGSPYLIGLLSE-MFRHSLQLGASTL--VANAM-------L-PSS-LAPS-LPFSSSNSTSLP-LVSSLDETAHR  214 (285)
Q Consensus       149 ~~~g~~~g~~~~G~l~d-~~~~~~~~~~~~~--~~~~~-------~-~~~-~~~~-~~~~~~~~~~~~-~~~~~~~~~p~  214 (285)
                       ..|.++|....|++.. +.++++.....+.  +.++.       . +.. +-.+ +++..+++.+.. ..+...++..+
T Consensus       254 -~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~  332 (403)
T PF03209_consen  254 -GGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSA  332 (403)
T ss_pred             -HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCC
Confidence             3566666667777766 4444443333221  11111       1 111 2111 222222333332 34556677766


Q ss_pred             cch-----------hhhccccchhhhhhhhh
Q psy5252         215 SDE-----------FLAHKSDEFLAHKSDEF  234 (285)
Q Consensus       215 ~~r-----------~l~~~~~p~~~G~~~~~  234 (285)
                      +..           .++..++-.++|.+.|.
T Consensus       333 ~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~  363 (403)
T PF03209_consen  333 GRAGLFMGAWGAAQAIARGLGTFLGGALRDL  363 (403)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            664           14456777777887763

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.96  E-value=1e-10  Score=105.32  Aligned_cols=166  Identities=17%  Similarity=0.212  Sum_probs=2.9

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC---------------------Cch
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG---------------------AWP   59 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g---------------------~wr   59 (285)
                      +.|+|.++.++.+.+|+.|.+++++-+..+|++++...+|+++|.++++.+.+.+-                     .|.
T Consensus       150 l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWW  229 (539)
T PF03137_consen  150 LIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWW  229 (539)
T ss_dssp             --SSS---------------------------------------------------------------------------
T ss_pred             HHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHH
Confidence            57999999999999999999999999999999999999999999999999886531                     277


Q ss_pred             HHHHHhhHHHHHHHHHHHHhccCCcCcc---------c-cCc-c------cc--------ccccHHHHHHHHhhhhhhHH
Q psy5252          60 WSLRVTPVLGACAVLLILFFMEDPERGE---------A-EGR-V------TE--------ERTSFGEDIRALCKNHRETW  114 (285)
Q Consensus        60 ~~f~i~~~~~~~~~~l~~~~~~~~~~~~---------~-~~~-~------~~--------~~~~~~~~~~~~~~~~~~~~  114 (285)
                      ..|++.+++.++..+.+..+.|+-|+..         . +.+ .      ++        ..+++...++.+++||.+.+
T Consensus       230 LGfli~g~~~~l~aipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~  309 (539)
T PF03137_consen  230 LGFLICGILLFLSAIPLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMC  309 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHH
Confidence            7788889888888877766655433320         0 000 0      00        01223445677788888865


Q ss_pred             -----------HHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhh
Q psy5252         115 -----------IFLNLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHS  170 (285)
Q Consensus       115 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~  170 (285)
                                 ...+..+.|.|...++..++...+...+...    +.+..+|.+++|.+..|++-+
T Consensus       310 ~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~----ip~~~~G~llGG~ivkk~kl~  372 (539)
T PF03137_consen  310 LILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVS----IPGAALGILLGGYIVKKFKLS  372 (539)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhh----cchhheehheEEEEEEEecCc
Confidence                       2235567788888899999888887777554    356667778999999988654

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG2563|consensus

Probab=98.95  E-value=6.2e-09  Score=89.06  Aligned_cols=166  Identities=14%  Similarity=0.158  Sum_probs=99.3

Q ss_pred             ccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhcc----C-CchH--HHHHhhHHHHHHHHHHHHhcc
Q psy5252           9 YSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVM----G-AWPW--SLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         9 ~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~----g-~wr~--~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      +......+.+.||+++||..+..+-.+++.+|.+++.++...+..+-    + .|..  .|...++++.+..++..+..+
T Consensus       157 im~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~  236 (480)
T KOG2563|consen  157 ILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFT  236 (480)
T ss_pred             hhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            33444577889999999999999999999999999999999998764    1 2554  355455554444444444444


Q ss_pred             CCcCcccc-CccccccccHHHHHHHHhhhhhhHHHHH------HHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhcccc
Q psy5252          82 DPERGEAE-GRVTEERTSFGEDIRALCKNHRETWIFL------NLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDA  154 (285)
Q Consensus        82 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  154 (285)
                      ++|+-... .+....+.++.+.++..++++++.....      ...+.....+.....+.+..+...+ .......++++
T Consensus       237 ~~P~tPps~s~~~~~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG-~ig~l~iv~Gm  315 (480)
T KOG2563|consen  237 KKPPTPPSASQAALQDASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAG-YIGALMIVAGM  315 (480)
T ss_pred             CCCCCCCchhHhhhhcCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccc-hhHHHHHHHHH
Confidence            43322111 1111123458889999999999866222      1222222222212222222222222 22222346667


Q ss_pred             chhhhhHHHhHHhhhhhcccc
Q psy5252         155 GSPYLIGLLSEMFRHSLQLGA  175 (285)
Q Consensus       155 ~g~~~~G~l~d~~~~~~~~~~  175 (285)
                      +|.++.|.+.||.++-+....
T Consensus       316 lga~~~gii~Dktk~fk~~~~  336 (480)
T KOG2563|consen  316 LGALASGIIADKTKKFKLTTL  336 (480)
T ss_pred             HHHHHHHhhhhhhhhHHHHHH
Confidence            788899999999988765444

>PRK11462 putative transporter; Provisional

Probab=98.92  E-value=8.7e-09  Score=91.85  Aligned_cols=158  Identities=12%  Similarity=0.102  Sum_probs=92.3

Q ss_pred             ccccchhHHHHhhccc-CCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC------CchHHHHHhhHHHHHHHHHHHHh
Q psy5252           7 ASYSTIAPTIISDLFV-KDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG------AWPWSLRVTPVLGACAVLLILFF   79 (285)
Q Consensus         7 ~~~~~~~~~~i~~~~~-~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g------~wr~~f~i~~~~~~~~~~l~~~~   79 (285)
                      ......-.++.+++.+ +|||.+..++...+.++|..+++.+...+.+..+      +|+....+.+++.++..++.+..
T Consensus       124 t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~  203 (460)
T PRK11462        124 TVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFT  203 (460)
T ss_pred             HHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            3444455667777776 6899999999999999998888887666554432      37777777777766665555444


Q ss_pred             ccCCcCccccCccccccccHHHHHHHHhhhhhhHHHHHH--HHH-------HHHHHHHHHhcCCCCcchhHHHHHHHhhh
Q psy5252          80 MEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFLN--LNW-------SIVADMTLYVVLPLRRSTAEAFQILISHA  150 (285)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (285)
                      .||.++++      +++.+.++.++..+++|.++.....  ..+       ....+...+......   ..+ .......
T Consensus       204 ~kE~~~~~------~~~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~---~~~-~~l~~~~  273 (460)
T PRK11462        204 TKERVEAP------PTTTSMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTPE---VFV-AFLTTYC  273 (460)
T ss_pred             ceeccCCC------ccCCCHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCChH---HHH-HHHHHHH
Confidence            45532211      1223466778888888887553211  111       011111122222111   111 1122223


Q ss_pred             ccccchhhhhHHHhHHhhhhhccc
Q psy5252         151 FGDAGSPYLIGLLSEMFRHSLQLG  174 (285)
Q Consensus       151 ~g~~~g~~~~G~l~d~~~~~~~~~  174 (285)
                      ++.+++.+++++++||+++|+...
T Consensus       274 i~~iig~~l~~~l~~r~gkk~~~~  297 (460)
T PRK11462        274 VGNLIGSALAKPLTDWKCKVTIFW  297 (460)
T ss_pred             HHHHHHHHHHHHHHHHhChHHHHH
Confidence            455566779999999999886543

>PRK09848 glucuronide transporter; Provisional

Probab=98.85  E-value=1.1e-08  Score=90.95  Aligned_cols=229  Identities=10%  Similarity=0.010  Sum_probs=109.1

Q ss_pred             ccccccccchhHHHHhhcccC-CchhHHHHHHHHHHh-----hHHHHHHHHHHHhhhccC-CchHHHHHhhHHHHHHHHH
Q psy5252           3 GIGEASYSTIAPTIISDLFVK-DLRSQMLAFFYFAIP-----IGSGLGYIVGSTAFSVMG-AWPWSLRVTPVLGACAVLL   75 (285)
Q Consensus         3 G~g~~~~~~~~~~~i~~~~~~-~~rg~~~gi~~~~~~-----iG~~~g~~l~~~l~~~~g-~wr~~f~i~~~~~~~~~~l   75 (285)
                      +++.+...++..++..+..++ +||.+..++...+.+     ++..++|.+.+....... .|.....+.+++.++..++
T Consensus       120 ~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~~  199 (448)
T PRK09848        120 GLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFI  199 (448)
T ss_pred             HHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence            445566666666766666544 678888777665433     455555555543321110 1222222333333333333


Q ss_pred             HHHhccCCcCccccCccccccccHHHHHHHHhhhhhhHHHHH--HHHHHHHHH---HHHHhc-CCCCcchhHHHHHHHhh
Q psy5252          76 ILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL--NLNWSIVAD---MTLYVV-LPLRRSTAEAFQILISH  149 (285)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~  149 (285)
                      .....||+++++      +++.+.++.++.++++|.+.....  ...+.....   ...+.. .........+.......
T Consensus       200 ~~~~~~e~~~~~------~~~~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  273 (448)
T PRK09848        200 CFKSTRENVVRI------VAQPSLKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQN  273 (448)
T ss_pred             HHcCcEeccCCC------ccCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHH
Confidence            333344432211      112345677888999998876322  111111100   011111 01111122222323333


Q ss_pred             hccccchhhhhHHHhHHhhhhhcccceeee--ee---c-ccc-cc-c--ccc-cccccc-ccCCcchhhhhccccCCcc-
Q psy5252         150 AFGDAGSPYLIGLLSEMFRHSLQLGASTLV--AN---A-MLP-SS-L--APS-LPFSSS-NSTSLPLVSSLDETAHRSD-  216 (285)
Q Consensus       150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~---~-~~~-~~-~--~~~-~~~~~~-~~~~~~~~~~~~~~~p~~~-  216 (285)
                      .++.+++.++.++++||+++++........  ++   . ..+ .. +  ... .+...+ .....+..++.+|..|+++ 
T Consensus       274 ~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~  353 (448)
T PRK09848        274 LVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEY  353 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence            455566778999999999988766542211  11   0 111 11 1  111 111111 2333445677778877643 


Q ss_pred             ----h-------------hhhccccchhhhhhhhhhhh
Q psy5252         217 ----E-------------FLAHKSDEFLAHKSDEFLAL  237 (285)
Q Consensus       217 ----r-------------~l~~~~~p~~~G~~~~~~~~  237 (285)
                          |             -+|.++++.+.|.+.+..|+
T Consensus       354 ~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        354 LTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             hhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence                1             15667888888887765554

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.76  E-value=1.3e-07  Score=82.71  Aligned_cols=82  Identities=16%  Similarity=0.238  Sum_probs=66.2

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHh--hHHHHHHHHHHHH
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVT--PVLGACAVLLILF   78 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~--~~~~~~~~~l~~~   78 (285)
                      +.|+++|+.. +..+++..|+|++||+++.|+..++..+|.++++++++++ ..++ ||+-+.+.  .+.+....+++.+
T Consensus       124 llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll-~s~g-Wr~y~~Ln~Isl~s~~~a~~~a~  200 (511)
T TIGR00806       124 FYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL-VTLG-WISYSTLNIISLVFMTFSVFLAL  200 (511)
T ss_pred             HHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcC-chhHHHHHHHHHHHHHHHHHHHH
Confidence            3689999999 9999999999999999999999999999999999999994 4565 99865433  3444455556667


Q ss_pred             hccCCcC
Q psy5252          79 FMEDPER   85 (285)
Q Consensus        79 ~~~~~~~   85 (285)
                      ++|.+++
T Consensus       201 ~LP~~~~  207 (511)
T TIGR00806       201 FLKRPKR  207 (511)
T ss_pred             hCCCCch
Confidence            7775544

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG0253|consensus

Probab=98.76  E-value=3.9e-08  Score=82.25  Aligned_cols=80  Identities=18%  Similarity=0.263  Sum_probs=64.9

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      .|.|.|+ .|...++-.+.-|..+|...+-.. .-..+|.+....+.-.+...+| |||-....+.+..+.+ ...+.++
T Consensus       176 ~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~g-wr~~l~~~~~pl~~~a-~f~~w~~  251 (528)
T KOG0253|consen  176 WGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFG-WRYLLFTSSTPLMFAA-RFLVWVY  251 (528)
T ss_pred             HhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHhHHHHHH-HHHhhcc
Confidence            5777888 888889999999999999877666 8889999999999999999896 9998888887666655 4456677


Q ss_pred             CCcC
Q psy5252          82 DPER   85 (285)
Q Consensus        82 ~~~~   85 (285)
                      |.+|
T Consensus       252 ESpR  255 (528)
T KOG0253|consen  252 ESPR  255 (528)
T ss_pred             cCcc
Confidence            7654

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.75  E-value=1.9e-07  Score=81.66  Aligned_cols=231  Identities=14%  Similarity=0.111  Sum_probs=132.5

Q ss_pred             ccccccccchhHHHHhhcccC-CchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC------CchHHHHHhhHHHHHHHHH
Q psy5252           3 GIGEASYSTIAPTIISDLFVK-DLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG------AWPWSLRVTPVLGACAVLL   75 (285)
Q Consensus         3 G~g~~~~~~~~~~~i~~~~~~-~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g------~wr~~f~i~~~~~~~~~~l   75 (285)
                      +++.+....+-.++.+++.+. +||.+..+..+...++|..+...+...+...++      +|+....+.+++.++..+.
T Consensus       123 ~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~  202 (467)
T COG2211         123 GLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLF  202 (467)
T ss_pred             HHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence            334444445555666666654 789999999999999998888887777766543      4788778888887777777


Q ss_pred             HHHhccCCcCccccCccccccccHHHHHHHHhhhhhhHHHHH--HHHHHHHH---H----HHHHhcCCCCcchhHHHHHH
Q psy5252          76 ILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL--NLNWSIVA---D----MTLYVVLPLRRSTAEAFQIL  146 (285)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~  146 (285)
                      +++..+|...+..+. ++..+.+.++++..+++||.+.....  .+.+....   .    ..++.++..+.   ......
T Consensus       203 ~~~~v~ER~~~~~~~-~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l---~~~~~~  278 (467)
T COG2211         203 CFFNVKERVVETQPT-KTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPEL---FAYLLL  278 (467)
T ss_pred             HHHHhhcccCccccC-cccccccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHH---HHHHHH
Confidence            777777654322111 12234566777778889988866332  11121110   0    11223332221   122223


Q ss_pred             HhhhccccchhhhhHHHhHHhhhhhcccceeee------eecccc-cc--cccc--cc-ccccccCCcchhhhhccccCC
Q psy5252         147 ISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV------ANAMLP-SS--LAPS--LP-FSSSNSTSLPLVSSLDETAHR  214 (285)
Q Consensus       147 ~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~------~~~~~~-~~--~~~~--~~-~~~~~~~~~~~~~~~~~~~p~  214 (285)
                      .....+.+.+.++..++++|+|+|+......++      ..+..+ ..  +.+.  .. ............++++|.+..
T Consensus       279 ~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDy  358 (467)
T COG2211         279 LASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDY  358 (467)
T ss_pred             HHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhH
Confidence            333455555567899999999999876653211      111122 11  1111  11 112234445567888888765


Q ss_pred             cc-----h----------h---hhccccchhhhhhhhhhhh
Q psy5252         215 SD-----E----------F---LAHKSDEFLAHKSDEFLAL  237 (285)
Q Consensus       215 ~~-----r----------~---l~~~~~p~~~G~~~~~~~~  237 (285)
                      ++     |          +   ++.+++..+.|++.+..|+
T Consensus       359 ge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy  399 (467)
T COG2211         359 GEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY  399 (467)
T ss_pred             HHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            44     3          1   5567777777777665543

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.70  E-value=2.3e-07  Score=82.74  Aligned_cols=69  Identities=16%  Similarity=0.217  Sum_probs=58.9

Q ss_pred             ccccccccchhHHHHhhcccCC--chhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHH
Q psy5252           3 GIGEASYSTIAPTIISDLFVKD--LRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACA   72 (285)
Q Consensus         3 G~g~~~~~~~~~~~i~~~~~~~--~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~   72 (285)
                      ++|.|...+...++++|++|++  +|..++++++.+.++|..++|.+.+++.+.++ ||+.|.+.++..++.
T Consensus       111 ~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~G-w~~~F~iaaigm~l~  181 (493)
T PRK15462        111 VCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYS-WAMGFGLAAVGMIAG  181 (493)
T ss_pred             HHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhC-hHHHHHHHHHHHHHH
Confidence            3566777788889999999886  79999999999999999999999999998886 999999876644433

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.59  E-value=9.8e-08  Score=70.08  Aligned_cols=80  Identities=23%  Similarity=0.436  Sum_probs=69.1

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      .|++.+...+...+++.|.+|+++|++.+++.+....+|..+++.+.+.+.+..+ |++.|++.++..++..+...+..|
T Consensus        61 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  139 (141)
T TIGR00880        61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRAPFLFLAILALAAFILLAFLLP  139 (141)
T ss_pred             HHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc-hHHHHHHHHHHHHHHHHHHhhcCC
Confidence            4667777788899999999999999999999999999999999999999998875 999999888887777666655555


Q ss_pred             C
Q psy5252          82 D   82 (285)
Q Consensus        82 ~   82 (285)
                      |
T Consensus       140 ~  140 (141)
T TIGR00880       140 E  140 (141)
T ss_pred             C
Confidence            4

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.59  E-value=6.3e-08  Score=85.88  Aligned_cols=80  Identities=20%  Similarity=0.303  Sum_probs=63.1

Q ss_pred             ccccccchhHHHHhhcccCCch--hHHHHHHHHHHhhHHHHHHHHHHHh--hhcc------------CCchHHHHHhhHH
Q psy5252           5 GEASYSTIAPTIISDLFVKDLR--SQMLAFFYFAIPIGSGLGYIVGSTA--FSVM------------GAWPWSLRVTPVL   68 (285)
Q Consensus         5 g~~~~~~~~~~~i~~~~~~~~r--g~~~gi~~~~~~iG~~~g~~l~~~l--~~~~------------g~wr~~f~i~~~~   68 (285)
                      +.....++..++++|.+|+++|  +.++++++...++|.++|+.++++.  .+.+            .+.|..|++.+++
T Consensus       127 ~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~  206 (477)
T TIGR01301       127 ANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIIL  206 (477)
T ss_pred             HHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHH
Confidence            3344567778999999999865  6899999999999999999999875  2211            0368899999888


Q ss_pred             HHHHHHHHHHhccCCc
Q psy5252          69 GACAVLLILFFMEDPE   84 (285)
Q Consensus        69 ~~~~~~l~~~~~~~~~   84 (285)
                      .++..++..+..||.+
T Consensus       207 l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       207 LAILTYIALSAVKENP  222 (477)
T ss_pred             HHHHHHHHeeeeeccC
Confidence            8887777777888854

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.56  E-value=8.1e-07  Score=76.88  Aligned_cols=241  Identities=10%  Similarity=-0.010  Sum_probs=122.5

Q ss_pred             cchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccCCcCcccc
Q psy5252          10 STIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDPERGEAE   89 (285)
Q Consensus        10 ~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~   89 (285)
                      .|..-+++.++-  ++.+.=.|-..+-.++|.+++..++|.+.+.  +-+..||+....+++..++..+.-|+.+++...
T Consensus       122 ~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i--~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~  197 (412)
T PF01306_consen  122 VPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI--NPNIIFWIASAAAIILLLLLLLLKPDVPPQAEV  197 (412)
T ss_dssp             HHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHSS---SSSSS-S
T ss_pred             chHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee--CccHHHHHHHHHHHHHHHHHHHcCCcCchhhhh
Confidence            344444444433  3444556677788899999999999999984  257788887766666554433332232222111


Q ss_pred             Cc--cccccccHHHHHHHHhhhhhhHHHHHH--HHHHH--HHHH--HH---HhcCCCCcch-hHHHHHHHhhhccccchh
Q psy5252          90 GR--VTEERTSFGEDIRALCKNHRETWIFLN--LNWSI--VADM--TL---YVVLPLRRST-AEAFQILISHAFGDAGSP  157 (285)
Q Consensus        90 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~--~~---~~~~~~~~~~-~~~~~~~~~~~~g~~~g~  157 (285)
                      .+  ++++++...++...++|+|++|.+..+  ..+..  .++.  ..   ...+....+. ..+.. .....+.-++..
T Consensus       198 ~~~~~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l-~s~~v~~E~~~m  276 (412)
T PF01306_consen  198 ADALGAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYL-WSVQVFLEALMM  276 (412)
T ss_dssp             STTSSS------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             hcccccCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHH-HHHHHHHHHHHH
Confidence            11  111111123456678899998873321  11111  1110  01   1222222232 33433 333334445556


Q ss_pred             hhhHHHhHHhhhhhcccceee-------eeecccccc-ccccccccccccC----CcchhhhhccccCCcch--------
Q psy5252         158 YLIGLLSEMFRHSLQLGASTL-------VANAMLPSS-LAPSLPFSSSNST----SLPLVSSLDETAHRSDE--------  217 (285)
Q Consensus       158 ~~~G~l~d~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~p~~~r--------  217 (285)
                      .+..++.+|+|.|+.+.....       ..++...+. +...=.+  ++..    .....-++.+.+|++..        
T Consensus       277 ~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klL--H~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~  354 (412)
T PF01306_consen  277 FFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLL--HALEFPLLLVAAFKYITAHFDKRLSATLYLVGF  354 (412)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHH
T ss_pred             HHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Confidence            688899999999875543211       111111111 1000000  0000    01122346677887775        


Q ss_pred             ----hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy5252         218 ----FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLL  257 (285)
Q Consensus       218 ----~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (285)
                          .++..+.+.+.|.+.|+.|++.++++.+.+.++..++...
T Consensus       355 ~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f  398 (412)
T PF01306_consen  355 QFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAF  398 (412)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHhee
Confidence                1556788999999999999998888777766555555444

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.55  E-value=4.7e-08  Score=83.30  Aligned_cols=249  Identities=12%  Similarity=0.041  Sum_probs=149.7

Q ss_pred             ccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHH--HHhhh----------------ccCCchHHHHH
Q psy5252           3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVG--STAFS----------------VMGAWPWSLRV   64 (285)
Q Consensus         3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~--~~l~~----------------~~g~wr~~f~i   64 (285)
                      .++.....+.-.+++.|..++++-++..++-.....+|..+.-.+.  ..+..                .. +-|..+.+
T Consensus       126 ~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~ri~~~l  204 (438)
T COG2270         126 SIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGE-DVRITGLL  204 (438)
T ss_pred             HHhcchhheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccc-cchhHHHH
Confidence            4556667778889999999999999999888888888877766654  11111                12 36888888


Q ss_pred             hhHHHHHHHHHHHHhccCCcCcc-ccCcc-ccccccHHHHHHHHhhhhhhHHHHH-----------HHHHHHHHHHHHHh
Q psy5252          65 TPVLGACAVLLILFFMEDPERGE-AEGRV-TEERTSFGEDIRALCKNHRETWIFL-----------NLNWSIVADMTLYV  131 (285)
Q Consensus        65 ~~~~~~~~~~l~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~  131 (285)
                      .++-.++..+.++...+++++.. +.++. ...-++.++++++..+++.+..+..           .......+....++
T Consensus       205 ~A~W~li~~iPm~~~v~~~~~~~~~~~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~g  284 (438)
T COG2270         205 AALWWLLFALPMILNVHDAEKISSPPPTALRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLG  284 (438)
T ss_pred             HHHHHHHHHhHHHhcccccccccccchHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcC
Confidence            88877777777777777766432 11111 1122335567777877776644221           11112222222344


Q ss_pred             cCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee-------eecccccc--ccccccccc-cccCC
Q psy5252         132 VLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV-------ANAMLPSS--LAPSLPFSS-SNSTS  201 (285)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~-------~~~~~~~~--~~~~~~~~~-~~~~~  201 (285)
                      ++..+.    .+.....+ +..++|.++.|++.||++.|++.....+.       ..+.....  +..+++.+. .++..
T Consensus       285 ls~~~l----ll~g~~~~-vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~q  359 (438)
T COG2270         285 LSSTEL----LLIGIALS-VVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQ  359 (438)
T ss_pred             ccHHHH----HHHHHHHH-HHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHH
Confidence            433222    22222222 44566788999999999999655442211       11111222  333444432 23444


Q ss_pred             cchhhhhccccCCcch--h---------hhccccchhhhhhhhhhh-hHHHHHHHHHHHHHHHHHHHH
Q psy5252         202 LPLVSSLDETAHRSDE--F---------LAHKSDEFLAHKSDEFLA-LQYALFITSFIEVLGGIFFLL  257 (285)
Q Consensus       202 ~~~~~~~~~~~p~~~r--~---------l~~~~~p~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  257 (285)
                      +..-++..+.+|+++.  +         .+..+||++.+.+.+.+| .+..+....++..++.+.+..
T Consensus       360 A~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~  427 (438)
T COG2270         360 ASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLR  427 (438)
T ss_pred             HHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEe
Confidence            4456778899999875  2         234799999999999877 677777666666666655443

>TIGR00889 2A0110 nucleoside transporter

Probab=98.54  E-value=1.7e-07  Score=82.57  Aligned_cols=85  Identities=16%  Similarity=0.223  Sum_probs=73.3

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHH-HHHhhHHHHHHHHHHHhhhccC-----CchHHHHHhhHHHHHHHHH
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFY-FAIPIGSGLGYIVGSTAFSVMG-----AWPWSLRVTPVLGACAVLL   75 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~-~~~~iG~~~g~~l~~~l~~~~g-----~wr~~f~i~~~~~~~~~~l   75 (285)
                      .|++.+...+....+++|++|+++|++++|+.+ ....+|..+||+++|.+.++.+     |||..|.+.+++.++..++
T Consensus       318 ~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l  397 (418)
T TIGR00889       318 YGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVL  397 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHH
Confidence            466677778888999999999999999999997 6788999999999999998743     3999999999988888888


Q ss_pred             HHHhccCCcCc
Q psy5252          76 ILFFMEDPERG   86 (285)
Q Consensus        76 ~~~~~~~~~~~   86 (285)
                      ..++++|++++
T Consensus       398 ~~~~~~~~~~~  408 (418)
T TIGR00889       398 FMIFFKYSHNA  408 (418)
T ss_pred             HHHHhCCcccC
Confidence            88888876543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.37  E-value=1.6e-07  Score=83.69  Aligned_cols=139  Identities=12%  Similarity=-0.015  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHh-hhhhcccceeee--ee---cccc--c-
Q psy5252         116 FLNLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMF-RHSLQLGASTLV--AN---AMLP--S-  186 (285)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~-~~~~~~~~~~~~--~~---~~~~--~-  186 (285)
                      +....+.+.+.....+.++.+.+...+...     ....++++++|+++||+ |||+......+.  ++   ....  . 
T Consensus        26 Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~-----~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~  100 (493)
T PRK15462         26 YGMRALLILYLTNQLKYDDNHAYELFSAYC-----SLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHP  100 (493)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcch
Confidence            334456666655555666555544444332     44455688999999999 998765542211  11   1111  1 


Q ss_pred             c-ccccc-cccccccCC-cchhhhhccccCCc--ch-----------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHH
Q psy5252         187 S-LAPSL-PFSSSNSTS-LPLVSSLDETAHRS--DE-----------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVL  250 (285)
Q Consensus       187 ~-~~~~~-~~~~~~~~~-~~~~~~~~~~~p~~--~r-----------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~  250 (285)
                      . +..+. ....+.+.. +...+++.|.+|++  .|           .+|..++|.+.|++.+..||+++|..+++.+++
T Consensus       101 ~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l  180 (493)
T PRK15462        101 SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIA  180 (493)
T ss_pred             hHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHH
Confidence            1 11111 111233444 33578889999986  35           166789999999999999999999887776666


Q ss_pred             HHHHHHHHh
Q psy5252         251 GGIFFLLGS  259 (285)
Q Consensus       251 ~~~~~~~~~  259 (285)
                      +.+.+....
T Consensus       181 ~li~~~~~~  189 (493)
T PRK15462        181 GLVIFLCGN  189 (493)
T ss_pred             HHHHHHHhh
Confidence            665554433

>KOG4686|consensus

Probab=98.37  E-value=4.2e-08  Score=79.28  Aligned_cols=243  Identities=12%  Similarity=0.056  Sum_probs=126.9

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCc-----hHH---HHHhhHHHHHH
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAW-----PWS---LRVTPVLGACA   72 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~w-----r~~---f~i~~~~~~~~   72 (285)
                      +.|+|.-..-++-++++..||..||.+.++|++.+..-+|..+-..+.+++.+..+..     +..   ....+...+..
T Consensus       145 ~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~  224 (459)
T KOG4686|consen  145 LFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQ  224 (459)
T ss_pred             eeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence            3577777788888999999999999999999999999999988888888887754310     000   11111111111


Q ss_pred             ---HHHHHHhccCCcCc---cccCccccccccHHHHHHHHhhhhhhHH-----HHHHHHHHHH------HHHHHHhcCCC
Q psy5252          73 ---VLLILFFMEDPERG---EAEGRVTEERTSFGEDIRALCKNHRETW-----IFLNLNWSIV------ADMTLYVVLPL  135 (285)
Q Consensus        73 ---~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~------~~~~~~~~~~~  135 (285)
                         +.+..-+. |.+.+   +.++....+..+. .+.+. + .|.+|.     ......|.|.      +....++.++.
T Consensus       225 slical~lg~~-D~rAerilh~e~g~~Ge~pkL-tdv~~-f-~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~  300 (459)
T KOG4686|consen  225 SLICALSLGLS-DDRAERILHLEEGFLGEEPKL-TDVNT-F-YPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAV  300 (459)
T ss_pred             HHHHHHHhhhh-hhHHHHHHhhhcCcccCCccc-ccccc-c-CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChh
Confidence               11111111 11111   1111110011011 11110 1 233433     2223445543      44455777777


Q ss_pred             CcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee--------eecccccc----ccccccccccccCCcc
Q psy5252         136 RRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV--------ANAMLPSS----LAPSLPFSSSNSTSLP  203 (285)
Q Consensus       136 ~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--------~~~~~~~~----~~~~~~~~~~~~~~~~  203 (285)
                      ..+...+...    .+.... .++.|.++||.|++........+        +.|...+.    ..+++...   ...-.
T Consensus       301 ~a~~i~s~vy----~Isav~-spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~lsPy~~m~~lGLsys---llAcs  372 (459)
T KOG4686|consen  301 SAGNILSTVY----GISAVL-SPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFLSPYTSMTFLGLSYS---LLACS  372 (459)
T ss_pred             hccchhhhhh----hhhhhh-hhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhccHHHHHHHHhhhHH---HHHHH
Confidence            7776655444    344444 55899999999998543331111        11111111    11111110   01111


Q ss_pred             hhhhhccccCCcch-----------hhhccccchhhhhhhhhhh-h---HHHHHHHHHHHHHHHHHH
Q psy5252         204 LVSSLDETAHRSDE-----------FLAHKSDEFLAHKSDEFLA-L---QYALFITSFIEVLGGIFF  255 (285)
Q Consensus       204 ~~~~~~~~~p~~~r-----------~l~~~~~p~~~G~~~~~~~-~---~~~~~~~~~~~~~~~~~~  255 (285)
                      ....++.++|+++-           .+|-++.|.+.|.+.|..| +   +.-|+.+..+.+++..+.
T Consensus       373 lWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil  439 (459)
T KOG4686|consen  373 LWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGIL  439 (459)
T ss_pred             HhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence            34567777777774           3777999999999999766 3   233344444444444333

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.34  E-value=8.3e-08  Score=85.96  Aligned_cols=136  Identities=9%  Similarity=-0.077  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHH--HhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHH-hhhhhcccceeeeee-----ccccc-c--
Q psy5252         119 LNWSIVADMTL--YVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEM-FRHSLQLGASTLVAN-----AMLPS-S--  187 (285)
Q Consensus       119 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~-~~~~~~~~~~~~~~~-----~~~~~-~--  187 (285)
                      ..+.+.+....  .+.+..+.+...+..     .++..++++++|+++|| +|||+.+........     +...+ .  
T Consensus        30 ~~~L~~yl~~~~~lg~s~~~ag~~~~~~-----~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~  104 (475)
T TIGR00924        30 QGILAVYLVQQAGLGFSQEQAFIIFGAY-----SALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDL  104 (475)
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHH-----HHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhH
Confidence            33444443332  344444444443333     35566778899999999 899987665331111     11111 1  


Q ss_pred             cccc-ccccccccCC-cchhhhhccccCCcc---h-----------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHH
Q psy5252         188 LAPS-LPFSSSNSTS-LPLVSSLDETAHRSD---E-----------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLG  251 (285)
Q Consensus       188 ~~~~-~~~~~~~~~~-~~~~~~~~~~~p~~~---r-----------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~  251 (285)
                      +..+ .+...+.+.. +...++++|.+|+++   |           .+|..+||.+.|.+.++.||++.|...++.++++
T Consensus       105 ~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~  184 (475)
T TIGR00924       105 IFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIG  184 (475)
T ss_pred             HHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            2122 1222333433 445678888888754   4           1677899999999999999999998877666666


Q ss_pred             HHHHHHHh
Q psy5252         252 GIFFLLGS  259 (285)
Q Consensus       252 ~~~~~~~~  259 (285)
                      .+.+....
T Consensus       185 ~l~~~~~~  192 (475)
T TIGR00924       185 LLTFFAGR  192 (475)
T ss_pred             HHHHHHcc
Confidence            55544433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.31  E-value=1.4e-06  Score=76.18  Aligned_cols=79  Identities=11%  Similarity=0.105  Sum_probs=66.7

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      .|++.+..++.....+.|.+|+|+|++++|+++....+|..+++++.+.+.+..+ |+..|++.+++.++..++...+.+
T Consensus       312 ~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        312 TGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFG-YPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             HHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4677777778878888899999999999999999999999999999999999886 999999988887776655544433

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.28  E-value=2.1e-07  Score=83.52  Aligned_cols=103  Identities=9%  Similarity=0.008  Sum_probs=65.0

Q ss_pred             hhhhhHHHhHH-hhhhhcccceeeeeec-----ccc-c--c-cccccc-ccccccC-CcchhhhhccccCCcch------
Q psy5252         156 SPYLIGLLSEM-FRHSLQLGASTLVANA-----MLP-S--S-LAPSLP-FSSSNST-SLPLVSSLDETAHRSDE------  217 (285)
Q Consensus       156 g~~~~G~l~d~-~~~~~~~~~~~~~~~~-----~~~-~--~-~~~~~~-~~~~~~~-~~~~~~~~~~~~p~~~r------  217 (285)
                      .++++|+++|| +|||+...........     ... .  . +..+.. ...+.+. .+...+++.|.+|+++|      
T Consensus        66 ~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~  145 (489)
T PRK10207         66 LISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAF  145 (489)
T ss_pred             HHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcch
Confidence            35689999999 9999876653311111     111 1  1 111111 1223333 34457889999988752      


Q ss_pred             -------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy5252         218 -------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLLG  258 (285)
Q Consensus       218 -------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (285)
                             .+|..++|.++|++.++.||+++|++.++..+++.+.+...
T Consensus       146 ~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~  193 (489)
T PRK10207        146 TLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFAC  193 (489)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHc
Confidence                   16678999999999999999999988766555555444443

>KOG2615|consensus

Probab=98.26  E-value=2.1e-07  Score=78.23  Aligned_cols=74  Identities=23%  Similarity=0.400  Sum_probs=53.0

Q ss_pred             chhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh---ccCCchHHH--HHhhHHHHHHHHHHHHhccCCc
Q psy5252          11 TIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS---VMGAWPWSL--RVTPVLGACAVLLILFFMEDPE   84 (285)
Q Consensus        11 ~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~---~~g~wr~~f--~i~~~~~~~~~~l~~~~~~~~~   84 (285)
                      ..+.++++|.+++|+|++.|+.+.....+|.++||++++++.+   ..++....+  ++..+++........+++|||-
T Consensus       139 ~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL  217 (451)
T KOG2615|consen  139 SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETL  217 (451)
T ss_pred             HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            4567999999999999999999999999999999999999998   333232222  1222222222334445778864

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.21  E-value=2.5e-06  Score=75.17  Aligned_cols=83  Identities=13%  Similarity=0.033  Sum_probs=69.0

Q ss_pred             ccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccC
Q psy5252           3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMED   82 (285)
Q Consensus         3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~   82 (285)
                      |++.+...+...+++.|.+|+++|++++|+++....+|..+|+.+.+.+.+.++ ++..+++.+...++..++....+++
T Consensus       323 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~  401 (417)
T PRK10489        323 GYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT-PVASASASGFGLLIIGVLLLLVLGE  401 (417)
T ss_pred             HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHHhccc
Confidence            555555667777899999999999999999999999999999999999999886 8999988887777766666667676


Q ss_pred             CcCc
Q psy5252          83 PERG   86 (285)
Q Consensus        83 ~~~~   86 (285)
                      .++.
T Consensus       402 ~~~~  405 (417)
T PRK10489        402 LRRF  405 (417)
T ss_pred             cccc
Confidence            5543

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.16  E-value=3.7e-07  Score=78.74  Aligned_cols=127  Identities=9%  Similarity=0.008  Sum_probs=74.9

Q ss_pred             HHHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee--ee---ccc-ccc--cccc-cccccc
Q psy5252         127 MTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV--AN---AML-PSS--LAPS-LPFSSS  197 (285)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~---~~~-~~~--~~~~-~~~~~~  197 (285)
                      ...++.++.+.+...+...     ++..++.++.|+++||++||+......+.  ++   ... ++.  +.+. .+...+
T Consensus        22 ~~~~g~s~~~~g~~~~~~~-----~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   96 (379)
T TIGR00881        22 VEEIGLSKTDLGLLLSSFS-----IAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIF   96 (379)
T ss_pred             HHHhCCCHhHHHHHHHHHH-----HHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            3345666666555544333     56666788999999999999765543211  11   111 111  1111 111122


Q ss_pred             -ccCCcchhhhhccccCCcchh-----------hhccccc-hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy5252         198 -NSTSLPLVSSLDETAHRSDEF-----------LAHKSDE-FLAHKSDEFLALQYALFITSFIEVLGGIFFLLG  258 (285)
Q Consensus       198 -~~~~~~~~~~~~~~~p~~~r~-----------l~~~~~p-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (285)
                       ........+.+.|.+|+++|.           ++..++| .+.+.+.+..+|+..+++.+++.++..+.....
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (379)
T TIGR00881        97 QGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLL  170 (379)
T ss_pred             ccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhee
Confidence             233445577889999998871           5557777 466667777889998887776665555444433

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.15  E-value=6.7e-07  Score=80.64  Aligned_cols=137  Identities=9%  Similarity=-0.086  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHH-hhhhhcccceeeee--e---cccc-c-c--
Q psy5252         118 NLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEM-FRHSLQLGASTLVA--N---AMLP-S-S--  187 (285)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~-~~~~~~~~~~~~~~--~---~~~~-~-~--  187 (285)
                      ...|.+.+....++.+..+.+...+...     ......++++|+++|| +|+|+......+..  +   .... . .  
T Consensus        40 ~~~~l~~yl~~~lg~s~~~a~~~~~~~~-----~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~  114 (500)
T PRK09584         40 LQGIMAVYLVKQLGMSEADSITLFSSFS-----ALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGI  114 (500)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence            3445555554455555444333322221     1122224589999999 59987655432111  1   1111 1 1  


Q ss_pred             cccc-ccccccccCC-cchhhhhccccCCcc-h------------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHH
Q psy5252         188 LAPS-LPFSSSNSTS-LPLVSSLDETAHRSD-E------------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGG  252 (285)
Q Consensus       188 ~~~~-~~~~~~~~~~-~~~~~~~~~~~p~~~-r------------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~  252 (285)
                      +.++ .....+.+.. ....+.+.|.+|++. |            .+|..++|.+.|++.|..||++.|.+.++..+++.
T Consensus       115 l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~  194 (500)
T PRK09584        115 VYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITV  194 (500)
T ss_pred             HHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence            1111 1122233433 334578889988653 2            15668999999999999999999998776666666


Q ss_pred             HHHHHHh
Q psy5252         253 IFFLLGS  259 (285)
Q Consensus       253 ~~~~~~~  259 (285)
                      +.+....
T Consensus       195 i~~~~~~  201 (500)
T PRK09584        195 VNFAFCQ  201 (500)
T ss_pred             HHHHHhH
Confidence            5555443

>PRK12382 putative transporter; Provisional

Probab=98.12  E-value=5.7e-06  Score=72.22  Aligned_cols=79  Identities=10%  Similarity=0.128  Sum_probs=68.0

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      .|++.+...+...+.+.|.+|+|+|++++|++++...+|..+++.+.+.+.++.+ |+..|.+.+++.++..++..+..+
T Consensus       312 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~  390 (392)
T PRK12382        312 TGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG-YPSVFLAGAISAVLGIIVTILSFR  390 (392)
T ss_pred             HHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHHhhcc
Confidence            4666777778888889999999999999999999999999999999999999886 999999998888777766554443

>PRK10054 putative transporter; Provisional

Probab=98.09  E-value=5.3e-07  Score=78.93  Aligned_cols=130  Identities=8%  Similarity=0.022  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee--ee---cccccc---ccccc
Q psy5252         121 WSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV--AN---AMLPSS---LAPSL  192 (285)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~---~~~~~~---~~~~~  192 (285)
                      +.+.+....++.++.+.+...+...     ++.+++.++.|+++||+++|+.+......  +.   +...+.   +.+..
T Consensus        29 ~l~~~l~~~~g~s~~~~g~~~s~~~-----~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (395)
T PRK10054         29 FMTIYLSRQYSLSVDLIGYAMTIAL-----TIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFF  103 (395)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            3444444445666555555544332     44455677999999999999765442211  11   111111   11111


Q ss_pred             -cccccccCCcc-hhhhhccccCCcch-----------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252         193 -PFSSSNSTSLP-LVSSLDETAHRSDE-----------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL  256 (285)
Q Consensus       193 -~~~~~~~~~~~-~~~~~~~~~p~~~r-----------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (285)
                       ......+...+ ..+...|..|+++|           .+|..++|.+.|.+.+ .+|+..|...+++.++..+...
T Consensus       104 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~  179 (395)
T PRK10054        104 ALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQ  179 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHH
Confidence             11111112222 45667899988877           1666899999998876 6899999887777666654443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.08  E-value=4.6e-07  Score=78.49  Aligned_cols=125  Identities=14%  Similarity=-0.084  Sum_probs=74.9

Q ss_pred             HHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee--eec---cc-ccc--cccc-ccccccc
Q psy5252         128 TLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV--ANA---ML-PSS--LAPS-LPFSSSN  198 (285)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~~---~~-~~~--~~~~-~~~~~~~  198 (285)
                      .+++.++.+.+...+..     .++..++.+..|+++||+|||+........  ...   .. ++.  +... .+...+.
T Consensus        19 ~~~~~s~~~~g~~~s~~-----~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~   93 (368)
T TIGR00903        19 EDIDVSKEELGLLAITY-----PAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQ   93 (368)
T ss_pred             HHhCcCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHh
Confidence            34556665555554433     366677788999999999988654332111  110   11 111  1111 1111112


Q ss_pred             cCCcchhhhhccccCCcchh-----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy5252         199 STSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLL  257 (285)
Q Consensus       199 ~~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (285)
                      +...+....++|.+|+++|.           +|..++|.+.+++.++.|||..|...+++.++..+++..
T Consensus        94 ~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~  163 (368)
T TIGR00903        94 PFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLA  163 (368)
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence            22333445568999998882           566888999999999999999998877766665554444

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.08  E-value=2.2e-06  Score=73.22  Aligned_cols=128  Identities=9%  Similarity=0.024  Sum_probs=86.0

Q ss_pred             cCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee-----eecccccc-ccccccc-c---ccccCC
Q psy5252         132 VLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV-----ANAMLPSS-LAPSLPF-S---SSNSTS  201 (285)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~-~---~~~~~~  201 (285)
                      ++..+.|...+...     +...++..+.|.++||.+.|..+....++     +.+.+.+. ..+..++ .   +++.-.
T Consensus        61 lsk~~lG~i~s~f~-----i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gw  135 (448)
T COG2271          61 LSKTQLGILGSAFS-----ITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGW  135 (448)
T ss_pred             CCHHHHHHHHHHHH-----HHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCC
Confidence            55555555544443     77788899999999999999654442211     11112222 1111111 1   234555


Q ss_pred             cchhhhhccccCCcch-----------hhhccccchhh--hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy5252         202 LPLVSSLDETAHRSDE-----------FLAHKSDEFLA--HKSDEFLALQYALFITSFIEVLGGIFFLLGSLYIVQ  264 (285)
Q Consensus       202 ~~~~~~~~~~~p~~~r-----------~l~~~~~p~~~--G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (285)
                      +|..-.+..-+|+++|           .+|+++.|.+.  +.+.++.+|+.+|++.+++.++.+++.+...+..++
T Consensus       136 pp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pq  211 (448)
T COG2271         136 PPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQ  211 (448)
T ss_pred             cHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            6678888999999999           27788888888  899999999999999999888887777766554443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.06  E-value=5.5e-06  Score=72.56  Aligned_cols=80  Identities=11%  Similarity=0.122  Sum_probs=69.6

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      .|++.+...|...+++.+..|+++|++.+++++....+|..+||.+++.+.+..+ |+..|++.+++.++..++..+..+
T Consensus       321 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~  399 (408)
T PRK09874        321 LGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG-FRAVFLVTAGVVLFNAVYSWNSLR  399 (408)
T ss_pred             HHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4777888888888999999999999999999999999999999999999999886 999999999888887766655444


Q ss_pred             C
Q psy5252          82 D   82 (285)
Q Consensus        82 ~   82 (285)
                      +
T Consensus       400 ~  400 (408)
T PRK09874        400 R  400 (408)
T ss_pred             H
Confidence            3

>PTZ00207 hypothetical protein; Provisional

Probab=98.03  E-value=1.3e-05  Score=72.91  Aligned_cols=81  Identities=16%  Similarity=0.115  Sum_probs=66.7

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      +|+|.+...+.+...+.+||| ++||+++|+...+.++|.++...+...+.. . +|+..|++.+++.++..++...+++
T Consensus       130 ~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~-~~~~~fl~l~vl~~vv~ll~~~~vr  206 (591)
T PTZ00207        130 MTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-D-NTSAYFFFLMSFALVVGILAIVFMR  206 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hHHHHHHHHHHHHHHHHHHHHhhee
Confidence            578888888999999999996 789999999999999999865554444443 2 4999999999999998888888888


Q ss_pred             CCcC
Q psy5252          82 DPER   85 (285)
Q Consensus        82 ~~~~   85 (285)
                      +++.
T Consensus       207 ~p~~  210 (591)
T PTZ00207        207 LPPF  210 (591)
T ss_pred             CCcc
Confidence            7753

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=97.95  E-value=3.4e-06  Score=73.81  Aligned_cols=116  Identities=9%  Similarity=-0.085  Sum_probs=70.3

Q ss_pred             HhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeeeee-----ccccc-c--c-ccccccccccc-
Q psy5252         130 YVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLVAN-----AMLPS-S--L-APSLPFSSSNS-  199 (285)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~~~-----~~~~~-~--~-~~~~~~~~~~~-  199 (285)
                      ++.++.+.+...+..     .++..++.++.|+++||++||+.+........     ..... .  + ..-.+...+.+ 
T Consensus        50 ~g~s~~~~g~~~~~~-----~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~  124 (394)
T PRK10213         50 LGISEGVAGQSVTVT-----AFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGG  124 (394)
T ss_pred             cCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHH
Confidence            445555544444333     35556678899999999999976655321111     11111 1  1 11112222222 


Q ss_pred             CCcchhhhhccccCCcchh-----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHH
Q psy5252         200 TSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVL  250 (285)
Q Consensus       200 ~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~  250 (285)
                      ......+.+.|.+|+++|.           ++..++|.+++.+.+..||++.|+..+++.++
T Consensus       125 ~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~  186 (394)
T PRK10213        125 FWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVL  186 (394)
T ss_pred             HHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence            2333466778999988871           55689999999999999999999876654443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.94  E-value=9.8e-05  Score=67.18  Aligned_cols=81  Identities=22%  Similarity=0.369  Sum_probs=59.0

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      .|+|.|... .....++|..|.|.|....++......+....++.++..+..+. +|||.|++..+...+.+++..++..
T Consensus       141 ~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~-~WRw~~~~~~i~~~i~~vl~~~fY~  218 (599)
T PF06609_consen  141 YGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHS-GWRWIFYIFIIWSGIALVLIFFFYF  218 (599)
T ss_pred             HHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCC-CcchHHHHHHHHHHHHHHHHHHHhC
Confidence            466655554 44566899999999998888777766666667788887776655 5999999998887776666655554


Q ss_pred             CCc
Q psy5252          82 DPE   84 (285)
Q Consensus        82 ~~~   84 (285)
                      .|+
T Consensus       219 PP~  221 (599)
T PF06609_consen  219 PPP  221 (599)
T ss_pred             CCc
Confidence            443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00891 2A0112 putative sialic acid transporter

Probab=97.94  E-value=4.8e-06  Score=72.65  Aligned_cols=118  Identities=8%  Similarity=0.034  Sum_probs=70.2

Q ss_pred             HHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee--e---eccc-ccc--ccc-ccccccc-
Q psy5252         128 TLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV--A---NAML-PSS--LAP-SLPFSSS-  197 (285)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~---~~~~-~~~--~~~-~~~~~~~-  197 (285)
                      ..++.++.+.+...+..     .++..++.++.|.++||+|||+......+.  +   .... ++.  +.. -.+.+.+ 
T Consensus        40 ~~~~~s~~~~g~~~~~~-----~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~  114 (405)
T TIGR00891        40 GEFGLTTVDAASLISAA-----LISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGM  114 (405)
T ss_pred             HHhCCChhhHHHHHHHH-----HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence            34556666655554433     366677788999999999999866543211  0   0111 111  111 1111112 


Q ss_pred             ccCCcchhhhhccccCCcchh-----------hhccccchhhhhhhhhhh--hHHHHHHHHHHHHH
Q psy5252         198 NSTSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLA--LQYALFITSFIEVL  250 (285)
Q Consensus       198 ~~~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~--~~~~~~~~~~~~~~  250 (285)
                      ........+.+.|.+|+++|.           +|..++|.+.+.+.+..+  |+..+.+..+..++
T Consensus       115 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~  180 (405)
T TIGR00891       115 GGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIF  180 (405)
T ss_pred             hhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence            233344567788999998872           556788888888887766  99888765444333

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=97.93  E-value=1.5e-05  Score=70.96  Aligned_cols=75  Identities=15%  Similarity=0.174  Sum_probs=65.0

Q ss_pred             cchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccCCcC
Q psy5252          10 STIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDPER   85 (285)
Q Consensus        10 ~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~~~~   85 (285)
                      .+....+++|.+|+++|++++++.+...++|..+++.+.+.+.+..+ |++.|++.++++++..++..++.||+++
T Consensus       401 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~i~~~~~~~~~~~  475 (481)
T TIGR00879       401 GPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIG-VGGVFIFFGGLNVLGLIFVYFFLPETKG  475 (481)
T ss_pred             cCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccceehhHHHHHHHHHHHHheecccCCC
Confidence            45666778999999999999999999999999999999999998886 9999999998888887777667776553

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00900 2A0121 H+ Antiporter protein

Probab=97.92  E-value=7.5e-07  Score=76.48  Aligned_cols=107  Identities=7%  Similarity=0.011  Sum_probs=67.9

Q ss_pred             hccccchhhhhHHHhHHhhhhhcccceeee-------eeccc--c--cc--cccc-ccccccc-cCCcchhhhhccccCC
Q psy5252         150 AFGDAGSPYLIGLLSEMFRHSLQLGASTLV-------ANAML--P--SS--LAPS-LPFSSSN-STSLPLVSSLDETAHR  214 (285)
Q Consensus       150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~-------~~~~~--~--~~--~~~~-~~~~~~~-~~~~~~~~~~~~~~p~  214 (285)
                      .++..++.++.|+++||++||+........       ..+..  .  +.  +... .+...+. .......+++.|.+|+
T Consensus        44 ~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~  123 (365)
T TIGR00900        44 MLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPE  123 (365)
T ss_pred             HHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            366667788999999999999876552211       11111  0  11  1111 1111122 2233456888999999


Q ss_pred             cchh-----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252         215 SDEF-----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL  256 (285)
Q Consensus       215 ~~r~-----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (285)
                      ++|.           ++..++|.+.+.+.+..+|+..++..++..++..+...
T Consensus       124 ~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  176 (365)
T TIGR00900       124 EQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIV  176 (365)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            8871           56689999999999999999999877666555544433

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.90  E-value=2.5e-05  Score=68.33  Aligned_cols=229  Identities=10%  Similarity=0.019  Sum_probs=106.8

Q ss_pred             ccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHH-HHHhhhccC--CchHHHHHhhHHHHHHHHHHHHhccCC
Q psy5252           7 ASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIV-GSTAFSVMG--AWPWSLRVTPVLGACAVLLILFFMEDP   83 (285)
Q Consensus         7 ~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l-~~~l~~~~g--~wr~~f~i~~~~~~~~~~l~~~~~~~~   83 (285)
                      .+..|...++.-++..  ++++-.|-...-.++|.+++... ...+....+  +....+++.+...++.. ...+.+|+.
T Consensus       106 ~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~-~~~l~lp~~  182 (400)
T PF03825_consen  106 SPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLA-GFALFLPKT  182 (400)
T ss_pred             ccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHH-HHHHhCCCC
Confidence            3445566666666664  44555666677777777777544 233333221  13345666665554443 333455655


Q ss_pred             cCccccCccccccccHHHHHHHHhhhhhhHHHHHHHH-----HHHHHHH-HHHhcCCC-CcchhHHHHHHHhhhccccch
Q psy5252          84 ERGEAEGRVTEERTSFGEDIRALCKNHRETWIFLNLN-----WSIVADM-TLYVVLPL-RRSTAEAFQILISHAFGDAGS  156 (285)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g  156 (285)
                      ++++.++++  .++....+...++|+|.+..+.....     ....+.. ..+..+.+ ..+...+..+. .+.+.-++-
T Consensus       183 ~~~~~~~~~--~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~-l~~~aEi~~  259 (400)
T PF03825_consen  183 PPKRSAKES--VKKLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWA-LGVVAEIPF  259 (400)
T ss_pred             ccccccCCC--cccccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHH-HHHHHHHHH
Confidence            422211111  11112233346788888765322111     1111111 11221112 11122222221 222334444


Q ss_pred             hhhhHHHhHHhhhhhcccceee-------eeecccccc-c-cccccc--cccccC----CcchhhhhccccCCcchh---
Q psy5252         157 PYLIGLLSEMFRHSLQLGASTL-------VANAMLPSS-L-APSLPF--SSSNST----SLPLVSSLDETAHRSDEF---  218 (285)
Q Consensus       157 ~~~~G~l~d~~~~~~~~~~~~~-------~~~~~~~~~-~-~~~~~~--~~~~~~----~~~~~~~~~~~~p~~~r~---  218 (285)
                      -...+++..|++.++.+.....       ..++...+. . .....+  ..++.+    ......++.+.+|++.|.   
T Consensus       260 f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q  339 (400)
T PF03825_consen  260 FFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQ  339 (400)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHH
Confidence            4466667777766654433221       111111111 1 111111  011222    222346677999999981   


Q ss_pred             ---------hhccccchhhhhhhhhhhhHHHH
Q psy5252         219 ---------LAHKSDEFLAHKSDEFLALQYAL  241 (285)
Q Consensus       219 ---------l~~~~~p~~~G~~~~~~~~~~~~  241 (285)
                               +|..+|..++|++.|+.|.+..+
T Consensus       340 ~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~  371 (400)
T PF03825_consen  340 GLYSALSFGLGGAIGSLIGGWLYDAFGARGMF  371 (400)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhcchhhh
Confidence                     67789999999999998866544

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=97.89  E-value=1.9e-06  Score=76.88  Aligned_cols=73  Identities=11%  Similarity=0.077  Sum_probs=64.3

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHH
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVL   74 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~   74 (285)
                      .|++.+...+...+++.|.+|++++++.+|++++..++|..+||.+++.+.+..++|+..|++.+++.++..+
T Consensus       343 ~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       343 FGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            4677888888999999999999999999999999999999999999999998775699999988877665543

>TIGR00895 2A0115 benzoate transport

Probab=97.89  E-value=4.3e-06  Score=72.66  Aligned_cols=107  Identities=14%  Similarity=0.062  Sum_probs=66.9

Q ss_pred             hccccchhhhhHHHhHHhhhhhcccceeeeee-----cc-cccc--cccc-cccccc-ccCCcchhhhhccccCCcchh-
Q psy5252         150 AFGDAGSPYLIGLLSEMFRHSLQLGASTLVAN-----AM-LPSS--LAPS-LPFSSS-NSTSLPLVSSLDETAHRSDEF-  218 (285)
Q Consensus       150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~~~-----~~-~~~~--~~~~-~~~~~~-~~~~~~~~~~~~~~~p~~~r~-  218 (285)
                      .++..++.++.|+++||++||+..........     .. .+..  +.+. .+...+ ........+.+.|.+|++.|. 
T Consensus        62 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~  141 (398)
T TIGR00895        62 LIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGT  141 (398)
T ss_pred             HHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhch
Confidence            36667778899999999999976654221100     11 1111  1111 111122 233445578889999988872 


Q ss_pred             ----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252         219 ----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL  256 (285)
Q Consensus       219 ----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (285)
                                ++..++|.+.|.+.+..+|+..+++.+++..+..++..
T Consensus       142 ~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  189 (398)
T TIGR00895       142 AVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLM  189 (398)
T ss_pred             hHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHH
Confidence                      56688999999999999999888876555544444333

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=97.88  E-value=2.2e-05  Score=73.65  Aligned_cols=80  Identities=15%  Similarity=0.160  Sum_probs=64.7

Q ss_pred             ccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccC
Q psy5252           3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMED   82 (285)
Q Consensus         3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~   82 (285)
                      |...++.++...++++|++|.++|++++|+.++...+|.+++|.+++.+.+. + ...+|++.+++.++..++. .++||
T Consensus       659 g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~-~~~pf~i~a~~lll~~ll~-~~LPE  735 (742)
T TIGR01299       659 GGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-T-KAAPILFASAALACGGLLA-LKLPD  735 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h-hHHHHHHHHHHHHHHHHHH-HhCCC
Confidence            4455667788889999999999999999999999999999999999988874 2 5678888877776665444 46677


Q ss_pred             CcC
Q psy5252          83 PER   85 (285)
Q Consensus        83 ~~~   85 (285)
                      ++.
T Consensus       736 T~~  738 (742)
T TIGR01299       736 TRG  738 (742)
T ss_pred             Ccc
Confidence            653

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=97.88  E-value=4.2e-05  Score=66.95  Aligned_cols=85  Identities=15%  Similarity=0.115  Sum_probs=69.4

Q ss_pred             cccccccccchhHHHHhhccc-CCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252           2 VGIGEASYSTIAPTIISDLFV-KDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~-~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      .|++.+...|.......+..+ ++++++.+|+.+....++..++|.+.+++.+..|+|...|.+..+..++..+....+.
T Consensus       302 ~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (393)
T PRK09705        302 CGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFA  381 (393)
T ss_pred             HHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhc
Confidence            366777777877777777775 5789999999999999999999999999999887788999988888777776666666


Q ss_pred             cCCcCc
Q psy5252          81 EDPERG   86 (285)
Q Consensus        81 ~~~~~~   86 (285)
                      ||++++
T Consensus       382 ~~~~~~  387 (393)
T PRK09705        382 PARFPQ  387 (393)
T ss_pred             cccccc
Confidence            766543

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=97.87  E-value=1.6e-06  Score=75.13  Aligned_cols=124  Identities=13%  Similarity=0.044  Sum_probs=75.5

Q ss_pred             HHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee--eec---cc-ccc--cccc-cccccc-c
Q psy5252         129 LYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV--ANA---ML-PSS--LAPS-LPFSSS-N  198 (285)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~~---~~-~~~--~~~~-~~~~~~-~  198 (285)
                      +++.++.+.+...+..     .++..++.++.|+++||++||+........  ++.   .. +..  +... .+...+ .
T Consensus        34 ~~g~s~~~~g~~~~~~-----~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~  108 (385)
T TIGR00710        34 DLSTPASIVQMTLTLY-----LLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGAS  108 (385)
T ss_pred             HhCCCHHHHHHHHHHH-----HHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchh
Confidence            3455554444444433     366677788999999999999766542211  111   11 111  1111 111112 2


Q ss_pred             cCCcchhhhhccccCCcchh-----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy5252         199 STSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLL  257 (285)
Q Consensus       199 ~~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (285)
                      .......+.+.|.+|+++|.           ++..++|.+.|.+.++.+|+..++..+++.++..+....
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (385)
T TIGR00710       109 AGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF  178 (385)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            23344567888999998871           555789999999999999999998777666665554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=97.87  E-value=2.5e-05  Score=68.45  Aligned_cols=79  Identities=10%  Similarity=0.054  Sum_probs=61.7

Q ss_pred             ccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252           3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      |++.+...+...+++.|.+|+++|++.+|+.+....+|..++|.+.+.+.++.++|...+++.....++..++.+...+
T Consensus       319 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (406)
T PRK11551        319 GLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLVS  397 (406)
T ss_pred             HHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4445556677888999999999999999999999999999999999999987655676776666665555544444333

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=97.87  E-value=3.5e-06  Score=74.16  Aligned_cols=124  Identities=9%  Similarity=-0.004  Sum_probs=72.6

Q ss_pred             HHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeeeee-----ccc-ccc--c-ccccccccccc
Q psy5252         129 LYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLVAN-----AML-PSS--L-APSLPFSSSNS  199 (285)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~~~-----~~~-~~~--~-~~~~~~~~~~~  199 (285)
                      +++.+..+.+...+..     .++..++.++.|+++||+|||+......+...     ... ++.  + ..-++.+.+.+
T Consensus        37 ~~~~s~~~~g~~~s~~-----~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~  111 (412)
T TIGR02332        37 DLGLSATMFGLAATLF-----YAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEA  111 (412)
T ss_pred             hcCCCHHHHHHHHHHH-----HHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Confidence            3444544544444433     36666778899999999999986654221111     111 111  1 11112222223


Q ss_pred             CCcc-hhhhhccccCCcchh-----------hhccccchhhhhhhh------hhhhHHHHHHHHHHHHHHHHHHHH
Q psy5252         200 TSLP-LVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDE------FLALQYALFITSFIEVLGGIFFLL  257 (285)
Q Consensus       200 ~~~~-~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  257 (285)
                      ...| ....+.|.+|+++|.           +|..++|.+.+++.+      ..|||+.|.+.++..++..++..+
T Consensus       112 ~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~  187 (412)
T TIGR02332       112 GFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWF  187 (412)
T ss_pred             hHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhh
Confidence            3334 346688999998872           456788888888764      468999998876666555444433

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=97.86  E-value=5.6e-07  Score=76.93  Aligned_cols=120  Identities=13%  Similarity=0.097  Sum_probs=75.7

Q ss_pred             HhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceee--eee---ccc-ccc--cc-cccccccc-cc
Q psy5252         130 YVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTL--VAN---AML-PSS--LA-PSLPFSSS-NS  199 (285)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~--~~~---~~~-~~~--~~-~~~~~~~~-~~  199 (285)
                      ++.++.+.+...+..     .++..++.++.|+++||+|+|+......+  .++   ..+ .+.  +. ...+...+ ..
T Consensus        27 ~~~s~~~~~~~~~~~-----~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~  101 (352)
T PF07690_consen   27 LGLSPSQIGLLFSAF-----FLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGF  101 (352)
T ss_dssp             STTTSHCHHHHHHHH-----HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhcccccccccc
Confidence            444555555544433     35566778899999999999985554221  111   011 221  11 11112222 23


Q ss_pred             CCcchhhhhccccCCcchh-----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy5252         200 TSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIF  254 (285)
Q Consensus       200 ~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~  254 (285)
                      ........+.|.+|+++|.           ++..++|.+.+.+.+..+|++.+++.+++.++..++
T Consensus       102 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  102 FSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAIL  167 (352)
T ss_dssp             HHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhh
Confidence            3344577889999998871           667899999999999999999999888887777664

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.85  E-value=4.8e-05  Score=66.57  Aligned_cols=83  Identities=14%  Similarity=0.358  Sum_probs=68.2

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHH-HhhHHHHHHHHHHHhhhccC-----CchHHHHHhhHHHHHHHHH
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFA-IPIGSGLGYIVGSTAFSVMG-----AWPWSLRVTPVLGACAVLL   75 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~-~~iG~~~g~~l~~~l~~~~g-----~wr~~f~i~~~~~~~~~~l   75 (285)
                      .|+..+.+++++..++.+.+|+|.|+++.++++.. ..+|..+|..++|++.+.++     +|...+.+.+++.++..++
T Consensus       311 hG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~  390 (400)
T PF03825_consen  311 HGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVL  390 (400)
T ss_pred             hhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence            57888889999999999999999999999999865 67999999999999999875     2445566677777777767


Q ss_pred             HHHhccCCc
Q psy5252          76 ILFFMEDPE   84 (285)
Q Consensus        76 ~~~~~~~~~   84 (285)
                      ..++.||++
T Consensus       391 f~~~fk~~~  399 (400)
T PF03825_consen  391 FVILFKPKH  399 (400)
T ss_pred             HHhhccCCC
Confidence            767766653

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.84  E-value=3.1e-06  Score=72.96  Aligned_cols=122  Identities=14%  Similarity=0.056  Sum_probs=67.9

Q ss_pred             HHHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceee-------eeecccccc--cccc-ccccc
Q psy5252         127 MTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTL-------VANAMLPSS--LAPS-LPFSS  196 (285)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~-------~~~~~~~~~--~~~~-~~~~~  196 (285)
                      ...++.++.+.+...+..     .++..++.++.|+++||+|+|+......+       ...+...+.  +... .+...
T Consensus        29 ~~~~~~s~~~~~~~~~~~-----~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~  103 (366)
T TIGR00886        29 KDDLGLSTAQLGNLVAVP-----VLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGI  103 (366)
T ss_pred             HHHhCCCHHHhhHhhHHH-----HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            345566666655554433     36677778899999999999976654221       111111021  1111 11122


Q ss_pred             cccCCcchhhhhccccCCcchh-----------hhccccchhhhhhhh----------hhhhHHHH-HHHHHHHHHHHH
Q psy5252         197 SNSTSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDE----------FLALQYAL-FITSFIEVLGGI  253 (285)
Q Consensus       197 ~~~~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~----------~~~~~~~~-~~~~~~~~~~~~  253 (285)
                      +.+...+....+.|.+|+++|.           +|..+++.+.+.+.+          +.+|++.+ ...+++..+..+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  182 (366)
T TIGR00886       104 AGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPAL  182 (366)
T ss_pred             hchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHH
Confidence            2333445677888999998871           344566666665554          23788888 333444333333

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=97.84  E-value=3.1e-06  Score=75.96  Aligned_cols=124  Identities=13%  Similarity=-0.049  Sum_probs=76.5

Q ss_pred             HHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeeee--e---ccc-ccc--cccc-cccccc-c
Q psy5252         129 LYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLVA--N---AML-PSS--LAPS-LPFSSS-N  198 (285)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~~--~---~~~-~~~--~~~~-~~~~~~-~  198 (285)
                      .++.++.+.+...+..     .++..++.++.|+++||+|||+.........  +   ... ++.  +..+ .+...+ .
T Consensus        31 ~~g~s~~~~~~~~~~~-----~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~  105 (485)
T TIGR00711        31 DLGSSLSQVQWVITSY-----MLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGG  105 (485)
T ss_pred             hcCCChhhhhHHHHHH-----HHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhh
Confidence            3455555555544433     3666677889999999999997665422111  0   011 111  1111 111112 2


Q ss_pred             cCCcchhhhhccccCCcchh-----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy5252         199 STSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLL  257 (285)
Q Consensus       199 ~~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (285)
                      .......+.+.|.+|+++|.           ++..++|.+.|.+.++.+|++.|+....+.++..++...
T Consensus       106 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~  175 (485)
T TIGR00711       106 PLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFF  175 (485)
T ss_pred             hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHH
Confidence            23334567888999998881           566899999999999999999998776665555544443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>KOG0254|consensus

Probab=97.84  E-value=3.6e-05  Score=69.83  Aligned_cols=84  Identities=25%  Similarity=0.481  Sum_probs=71.5

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhc-cCCchHHHHHhhHHHHHHHHHHHHh
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSV-MGAWPWSLRVTPVLGACAVLLILFF   79 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~-~g~wr~~f~i~~~~~~~~~~l~~~~   79 (285)
                      ++|+|.|........+++|..|++.||...++.+....+|..++..++...... ++ ||..+.+..+.+++..+. .++
T Consensus       151 l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~-Wr~~~~~~~i~~~~~~~~-~~~  228 (513)
T KOG0254|consen  151 LTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAG-WRIPLGLALIPAVILALG-MLF  228 (513)
T ss_pred             HhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCcc-HHHHHHHHHHHHHHHHHH-HHh
Confidence            479999999999999999999999999999999999999999996666555443 34 999999999988888867 778


Q ss_pred             ccCCcCc
Q psy5252          80 MEDPERG   86 (285)
Q Consensus        80 ~~~~~~~   86 (285)
                      +||.|+.
T Consensus       229 ~pesp~~  235 (513)
T KOG0254|consen  229 LPESPRW  235 (513)
T ss_pred             CCCChHH
Confidence            8887753

>KOG0255|consensus

Probab=97.82  E-value=3.9e-05  Score=69.73  Aligned_cols=80  Identities=14%  Similarity=0.202  Sum_probs=69.2

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      ++|++.++....+..+++|++++++|+.++.+ ......++..+++.++++.+   +||+.+++..++..+..++ .++.
T Consensus       180 l~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~---~Wr~~~~~~~~~~~~~~~~-~~l~  254 (521)
T KOG0255|consen  180 LSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR---DWRWLFWIISIPSGLFLLL-WFLP  254 (521)
T ss_pred             HHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHH-HHcc
Confidence            46889999999999999999999999999999 88888888899999999987   4999999999998877655 5666


Q ss_pred             cCCcC
Q psy5252          81 EDPER   85 (285)
Q Consensus        81 ~~~~~   85 (285)
                      +|.++
T Consensus       255 ~Es~r  259 (521)
T KOG0255|consen  255 PESPR  259 (521)
T ss_pred             CcChH
Confidence            67765

>PRK09528 lacY galactoside permease; Reviewed

Probab=97.82  E-value=1.6e-05  Score=70.20  Aligned_cols=81  Identities=12%  Similarity=0.114  Sum_probs=65.0

Q ss_pred             ccccccccchhHHHHhhcccCCchhHHHHH-HHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252           3 GIGEASYSTIAPTIISDLFVKDLRSQMLAF-FYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi-~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      |++.+...+....++.+.+|++.|+...+. ++....+|.++++.+.+++.+.+| ||..|.+.+++.++..++..+..+
T Consensus       326 g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G-~~~~f~~~~~~~~i~~~~~~~~~~  404 (420)
T PRK09528        326 AFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG-FQGTYLILGGIVLLFTLISVFTLS  404 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHHHHHHHhc
Confidence            445555566677888999999999887665 677889999999999999999886 999999988887777766666666


Q ss_pred             CCc
Q psy5252          82 DPE   84 (285)
Q Consensus        82 ~~~   84 (285)
                      +++
T Consensus       405 ~~~  407 (420)
T PRK09528        405 GDR  407 (420)
T ss_pred             CCc
Confidence            543

>KOG2325|consensus

Probab=97.81  E-value=0.0007  Score=59.89  Aligned_cols=86  Identities=19%  Similarity=0.255  Sum_probs=64.3

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC-C-----------chHHHHHhhHHH
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG-A-----------WPWSLRVTPVLG   69 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g-~-----------wr~~f~i~~~~~   69 (285)
                      .|+|.+.. ...-+++++--..++|.++++....+..+|.++||.+...+..... |           +-.+=|++.++.
T Consensus       140 ~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~  218 (488)
T KOG2325|consen  140 TGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILW  218 (488)
T ss_pred             cCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHH
Confidence            45665554 5566899998888999999999999888888888888877665310 1           233457788888


Q ss_pred             HHHHHHHHHhccCCcCccc
Q psy5252          70 ACAVLLILFFMEDPERGEA   88 (285)
Q Consensus        70 ~~~~~l~~~~~~~~~~~~~   88 (285)
                      ++..+++.++++|.+++..
T Consensus       219 i~~~v~i~~~f~E~~~~~~  237 (488)
T KOG2325|consen  219 IIYIVIILFFFKEVYRGII  237 (488)
T ss_pred             HHHHHHHHhheeecccCcc
Confidence            8888888889999876553

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.78  E-value=0.0026  Score=56.66  Aligned_cols=158  Identities=10%  Similarity=0.016  Sum_probs=88.3

Q ss_pred             hhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh-------ccCCch----HHHHHhhHHHHHHHHHHHHhc
Q psy5252          12 IAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS-------VMGAWP----WSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus        12 ~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~-------~~g~wr----~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      .-.++++|.+..+|-.|-.+++..+.++|..+++.+..++.+       ..+.|.    ..+.+.++...+...+....-
T Consensus       149 lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~  228 (472)
T TIGR00769       149 LFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVN  228 (472)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346789999999999999999999999999999999988873       222342    233444444444443333322


Q ss_pred             cCCcCccc------cCccccccccHHHHHHHHhhhhhhHHHHHHH-HHHHHHH---------HHHHhcCCCCcchhHHHH
Q psy5252          81 EDPERGEA------EGRVTEERTSFGEDIRALCKNHRETWIFLNL-NWSIVAD---------MTLYVVLPLRRSTAEAFQ  144 (285)
Q Consensus        81 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---------~~~~~~~~~~~~~~~~~~  144 (285)
                      ++...++.      ++++++++.+..++++.++++|.+..+.... .+.....         .....-++++.+..++-.
T Consensus       229 ~~~~~~~~~~~~~~~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~  308 (472)
T TIGR00769       229 RNVLTDPRSYNPALKEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDF  308 (472)
T ss_pred             hcccCCccccchhhccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            22111110      1122234556889999999999776632211 1111100         111122344445555544


Q ss_pred             HHHhhhccccchhhhhHHHhHHhhhh
Q psy5252         145 ILISHAFGDAGSPYLIGLLSEMFRHS  170 (285)
Q Consensus       145 ~~~~~~~g~~~g~~~~G~l~d~~~~~  170 (285)
                      ....+.+..+ ..++.+++.+|+|-+
T Consensus       309 ~~~~gi~tl~-~~l~~~~l~~~~Gw~  333 (472)
T TIGR00769       309 STWTGVVSVT-MMLLSGNVIRKYGWL  333 (472)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHhhHH
Confidence            4433434322 244446777777665

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=97.77  E-value=2.6e-05  Score=67.15  Aligned_cols=69  Identities=19%  Similarity=0.332  Sum_probs=60.0

Q ss_pred             ccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHH
Q psy5252           3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACA   72 (285)
Q Consensus         3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~   72 (285)
                      |++.+...+...++++|.+|+++|++++|+++....+|..++|.+.+.+.+..+ |++.|.+.+++.++.
T Consensus       306 g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       306 FFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIG-FEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHh
Confidence            455566667778899999999999999999999999999999999999999886 999999888766554

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=97.77  E-value=6.6e-05  Score=67.70  Aligned_cols=80  Identities=10%  Similarity=0.106  Sum_probs=57.4

Q ss_pred             ccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccCCcCc
Q psy5252           7 ASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDPERG   86 (285)
Q Consensus         7 ~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~~~~~   86 (285)
                      +........++++.+|++.|++++|+.+....++..++|.+.+++.+..++|+.++++..+.+++..+. .+++||+++.
T Consensus       357 ~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~-~~~~pes~~~  435 (490)
T PRK10642        357 NCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLIT-GVTMKETANR  435 (490)
T ss_pred             HHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH-HHHhccccCC
Confidence            344455677888999999999999975444556668899999998876555887777666666655544 4456887664


Q ss_pred             c
Q psy5252          87 E   87 (285)
Q Consensus        87 ~   87 (285)
                      .
T Consensus       436 ~  436 (490)
T PRK10642        436 P  436 (490)
T ss_pred             C
Confidence            3

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=97.76  E-value=4.6e-05  Score=64.86  Aligned_cols=74  Identities=20%  Similarity=0.248  Sum_probs=66.9

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHH
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLI   76 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~   76 (285)
                      .|++.+...+...+++.|.+|+|+|++.+|+.+...++|..+++.+.+.+.+..+ |+..|.+.+++.++..+..
T Consensus       275 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~-~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         275 LGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG-YGGVFLILAALALLAALLL  348 (352)
T ss_pred             HHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-cchHHHHHHHHHHHHHHHh
Confidence            4778888899999999999999999999999999999999999999999998775 9999999998887766543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.75  E-value=1.4e-06  Score=77.91  Aligned_cols=109  Identities=6%  Similarity=-0.014  Sum_probs=69.5

Q ss_pred             ccccchhhhhHHHhHHhhhhhcccceeee---e--e--ccccc-c--c-cccccccccccCCc-chhhhhccccCCcchh
Q psy5252         151 FGDAGSPYLIGLLSEMFRHSLQLGASTLV---A--N--AMLPS-S--L-APSLPFSSSNSTSL-PLVSSLDETAHRSDEF  218 (285)
Q Consensus       151 ~g~~~g~~~~G~l~d~~~~~~~~~~~~~~---~--~--~~~~~-~--~-~~~~~~~~~~~~~~-~~~~~~~~~~p~~~r~  218 (285)
                      ++..++.++.|+++||+++|+......+.   .  .  +.... .  + ...++.+.+.+... .....+.|.+|+++|.
T Consensus        87 ~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~  166 (465)
T TIGR00894        87 YGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERS  166 (465)
T ss_pred             HHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHH
Confidence            66777788999999999999765542211   1  0  11111 1  1 11222222233333 3467889999999882


Q ss_pred             -----------hhccccchhhhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHh
Q psy5252         219 -----------LAHKSDEFLAHKSDEF-LALQYALFITSFIEVLGGIFFLLGS  259 (285)
Q Consensus       219 -----------l~~~~~p~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  259 (285)
                                 +|..++|.+.+.+.+. .+|+..|++.++..++..+++....
T Consensus       167 ~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~  219 (465)
T TIGR00894       167 RLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFP  219 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHh
Confidence                       5668899999999888 4999999887776665555544433

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=97.74  E-value=1.8e-05  Score=71.56  Aligned_cols=105  Identities=15%  Similarity=0.112  Sum_probs=67.9

Q ss_pred             ccccchhhhhHHHhHHhhhhhccccee-------eeeecc--cc--cc---ccccccccccccCCcch-hhhhccccCCc
Q psy5252         151 FGDAGSPYLIGLLSEMFRHSLQLGAST-------LVANAM--LP--SS---LAPSLPFSSSNSTSLPL-VSSLDETAHRS  215 (285)
Q Consensus       151 ~g~~~g~~~~G~l~d~~~~~~~~~~~~-------~~~~~~--~~--~~---~~~~~~~~~~~~~~~~~-~~~~~~~~p~~  215 (285)
                      +-.++..++.|.++||+.||+.+...-       ..+.+.  ..  ..   +.+.++...+.....|. ++.+.|++|++
T Consensus        56 LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~  135 (524)
T PF05977_consen   56 LPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKE  135 (524)
T ss_pred             HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh
Confidence            444445668999999999998776521       111111  11  11   12222233334444554 78899999998


Q ss_pred             ch-----------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy5252         216 DE-----------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFF  255 (285)
Q Consensus       216 ~r-----------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (285)
                      +.           .++..+||.++|.+....|...+|.+.++..+++..++
T Consensus       136 ~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l  186 (524)
T PF05977_consen  136 DLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILAL  186 (524)
T ss_pred             hHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            84           15568999999999999999988988777666654443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=97.74  E-value=1.2e-05  Score=70.44  Aligned_cols=127  Identities=9%  Similarity=-0.041  Sum_probs=68.5

Q ss_pred             HHHHHHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeeeee-----c---cccc-----cc--
Q psy5252         124 VADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLVAN-----A---MLPS-----SL--  188 (285)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~~~-----~---~~~~-----~~--  188 (285)
                      .+....++.++.+.+...+...     ++..++.++.|+++||+|||+..........     +   ....     .+  
T Consensus        27 ~~~~~~~g~s~~~~g~~~~~~~-----l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (396)
T TIGR00882        27 IWLHDVNGLSKTDTGIVFSCIS-----LFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVG  101 (396)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            3333344555555555444333     5666678899999999999987754221100     0   0000     00  


Q ss_pred             -cc-cccccccccCCcc-hhhhhccccCCcc------h---hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252         189 -AP-SLPFSSSNSTSLP-LVSSLDETAHRSD------E---FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL  256 (285)
Q Consensus       189 -~~-~~~~~~~~~~~~~-~~~~~~~~~p~~~------r---~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (285)
                       .+ ..+.....+...| ...+..|..+++.      |   .+|..++|.++|.+.+ .+|+..|+..+++.++..++.+
T Consensus       102 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~  180 (396)
T TIGR00882       102 AIVGGLYLGFVFSAGAGAIEAYIEKVSRNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLM  180 (396)
T ss_pred             HHHHHHHHHHHhccchhhHHHHHHHhhhhcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHH
Confidence             11 1111111222222 2344445433321      1   2666889999998876 4899999877776666554443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=97.72  E-value=4.1e-05  Score=68.79  Aligned_cols=109  Identities=16%  Similarity=0.139  Sum_probs=60.8

Q ss_pred             hccccchhhhhHHHhHHhhhhhcccceeee--eec---cc-ccc--c-cccccccccccCCcchhhhhccccCCcchh--
Q psy5252         150 AFGDAGSPYLIGLLSEMFRHSLQLGASTLV--ANA---ML-PSS--L-APSLPFSSSNSTSLPLVSSLDETAHRSDEF--  218 (285)
Q Consensus       150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~~---~~-~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~--  218 (285)
                      .++..++.++.|+++||+|+|+......+.  +..   .. .+.  + ...++...+.+...+....+.|.+|+++|.  
T Consensus        81 ~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a  160 (476)
T PLN00028         81 VSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTA  160 (476)
T ss_pred             HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHH
Confidence            466677788999999999999765442211  111   11 111  1 111111111222334455678999998882  


Q ss_pred             ---------hhccccchhhhhhh----h-----hhhhHHHHHHHHHHHHHHHHHHHHH
Q psy5252         219 ---------LAHKSDEFLAHKSD----E-----FLALQYALFITSFIEVLGGIFFLLG  258 (285)
Q Consensus       219 ---------l~~~~~p~~~G~~~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~  258 (285)
                               ++..+++.+.+.+.    +     ..|||+.|++.+++.++..+...+.
T Consensus       161 ~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~  218 (476)
T PLN00028        161 NGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTL  218 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence                     33345544444432    2     2589999998777766655544433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=97.70  E-value=0.0001  Score=64.20  Aligned_cols=70  Identities=10%  Similarity=0.011  Sum_probs=60.4

Q ss_pred             ccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHH
Q psy5252           3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAV   73 (285)
Q Consensus         3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~   73 (285)
                      |++.....|...+.+.|..|+++++...+.++...++|..+||.+++++.++++ |++.|.+.+.+.++..
T Consensus       296 g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g-~~~~f~~~~~~~l~~~  365 (381)
T PRK03633        296 GAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS-DNLLFIMIASVSFIYL  365 (381)
T ss_pred             HHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHH
Confidence            445556678899999999999888889999999999999999999999999986 9999998887776554

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=97.68  E-value=2.6e-06  Score=73.83  Aligned_cols=123  Identities=11%  Similarity=0.084  Sum_probs=74.7

Q ss_pred             HHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeeee--e---ccc-ccc--ccc-cccccccc-
Q psy5252         129 LYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLVA--N---AML-PSS--LAP-SLPFSSSN-  198 (285)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~~--~---~~~-~~~--~~~-~~~~~~~~-  198 (285)
                      .++.++.+.+...+..     .++..++.++.|+++||++||+......+..  .   ... +..  +.. ..+...+. 
T Consensus        20 ~~~~s~~~~~~~~~~~-----~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~   94 (377)
T PRK11102         20 DFGVSAGSVQMTLSAY-----ILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAA   94 (377)
T ss_pred             HhCCCHHHHHHHHHHH-----HHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            3455555555444433     3666677889999999999987655422110  0   111 111  111 11111112 


Q ss_pred             cCCcchhhhhccccCCcchh-----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252         199 STSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL  256 (285)
Q Consensus       199 ~~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (285)
                      ....+..+.+.|.+|+++|.           ++..++|.+.+.+.+..+|+..++..+++.++..+...
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  163 (377)
T PRK11102         95 AASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVF  163 (377)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence            22334567788999988871           56688999999999988999998877766666554443

>PRK11663 regulatory protein UhpC; Provisional

Probab=97.68  E-value=6.2e-05  Score=66.76  Aligned_cols=68  Identities=15%  Similarity=0.194  Sum_probs=58.4

Q ss_pred             HHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccC
Q psy5252          14 PTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMED   82 (285)
Q Consensus        14 ~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~   82 (285)
                      ..+++|.+|+++|++++|+.++...+|..++|.+.+.+.++.+ |+..|.+.++++++..+......++
T Consensus       359 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~  426 (434)
T PRK11663        359 GMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWH-WTGFFVVISIAAGISALLLLPFLNA  426 (434)
T ss_pred             HHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3567899999999999999999999999999999999999986 9999999988887776655554443

>PRK03545 putative arabinose transporter; Provisional

Probab=97.67  E-value=0.00015  Score=63.28  Aligned_cols=78  Identities=19%  Similarity=0.220  Sum_probs=64.9

Q ss_pred             ccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccC
Q psy5252           3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMED   82 (285)
Q Consensus         3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~   82 (285)
                      |++.+...+...+.+.+..| ++|++++|+++....+|..+|++++|.+.++++ ++..|++.+++.++..+......++
T Consensus       305 g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~  382 (390)
T PRK03545        305 GIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLG-LSSIGYVGAALALAALVWSILIFRR  382 (390)
T ss_pred             HHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhHHHHHHHHHHHHHHHHHHHHccc
Confidence            55555566667778888765 689999999999999999999999999999996 9999999998888877776666653

>PRK10091 MFS transport protein AraJ; Provisional

Probab=97.67  E-value=6.9e-06  Score=71.52  Aligned_cols=120  Identities=13%  Similarity=0.006  Sum_probs=72.2

Q ss_pred             HHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee--ee---cccccc---cccc-cccccccc
Q psy5252         129 LYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV--AN---AMLPSS---LAPS-LPFSSSNS  199 (285)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~---~~~~~~---~~~~-~~~~~~~~  199 (285)
                      .++.+..+.+...+..     .++..++.++.|+++||+++|+........  ++   ....+.   +.+. .+...+.+
T Consensus        32 ~~g~s~~~~g~~~s~~-----~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~  106 (382)
T PRK10091         32 DVGISIPAAGHMISYY-----ALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHG  106 (382)
T ss_pred             HcCCCHHHHhHHHHHH-----HHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhH
Confidence            3455555555544433     366777888999999999999876653211  11   111111   1111 11111112


Q ss_pred             C-CcchhhhhccccCCcchh-----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy5252         200 T-SLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGI  253 (285)
Q Consensus       200 ~-~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~  253 (285)
                      . .......+.|.+|+++|.           ++..++|.+.+.+.+..+|++.|...+++.++..+
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~  172 (382)
T PRK10091        107 AFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLA  172 (382)
T ss_pred             HHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHH
Confidence            2 222345677888887761           45578899999999999999999877766555444

>PRK11043 putative transporter; Provisional

Probab=97.66  E-value=1.1e-05  Score=70.75  Aligned_cols=122  Identities=14%  Similarity=-0.031  Sum_probs=71.7

Q ss_pred             HhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeeeee-----ccc-ccc--cccc-cccccccc-
Q psy5252         130 YVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLVAN-----AML-PSS--LAPS-LPFSSSNS-  199 (285)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~~~-----~~~-~~~--~~~~-~~~~~~~~-  199 (285)
                      ++.++.+.+...+..     .++..++.++.|+++||++||+.+........     ... ++.  +... .+...+.+ 
T Consensus        36 ~~~s~~~~g~~~s~~-----~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~  110 (401)
T PRK11043         36 LQTSASAVSASLSLF-----LAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCS  110 (401)
T ss_pred             HCCCHHHHHHHHHHH-----HHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHH
Confidence            444444444444333     36667788899999999999986654221110     011 111  1111 11111111 


Q ss_pred             CCcchhhhhccccCCcchh-----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252         200 TSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL  256 (285)
Q Consensus       200 ~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (285)
                      ......+.+.|.+|++.+.           ++..++|.+.|.+.++.+|+..++..+++.++..+...
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  178 (401)
T PRK11043        111 AAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTL  178 (401)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence            1222356678888887651           45578999999999999999999877666655554443

>TIGR00893 2A0114 d-galactonate transporter

Probab=97.65  E-value=0.00011  Score=63.42  Aligned_cols=69  Identities=20%  Similarity=0.147  Sum_probs=60.9

Q ss_pred             ccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHH
Q psy5252           9 YSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLIL   77 (285)
Q Consensus         9 ~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~   77 (285)
                      ..+...++++|.+|+++|++++|+.+...++|..+++.+.+.+.+..++|+..|++.++..++..+...
T Consensus       328 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       328 AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence            678889999999999999999999999999999999999999999875599999988887766655543

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=97.62  E-value=1.1e-05  Score=70.53  Aligned_cols=121  Identities=7%  Similarity=-0.092  Sum_probs=68.6

Q ss_pred             HHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee--e---eccccc-c--cccc-ccccccc
Q psy5252         128 TLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV--A---NAMLPS-S--LAPS-LPFSSSN  198 (285)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~---~~~~~~-~--~~~~-~~~~~~~  198 (285)
                      ..++.++.+.+...+..     .++..++.++.|+++||++||+.+......  +   ...... .  +.+. .+...+.
T Consensus        36 ~~~~~s~~~~~~~~~~~-----~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  110 (394)
T PRK11652         36 RDLNVREGAVQAVMAAY-----LLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGT  110 (394)
T ss_pred             HHhCCCHHHHHHHHHHH-----HHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhh
Confidence            34555555555444433     366777788999999999999865542211  0   001111 1  1111 1111111


Q ss_pred             cCCcc-hhhhhccccCCcchh-----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy5252         199 STSLP-LVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGI  253 (285)
Q Consensus       199 ~~~~~-~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~  253 (285)
                      +...+ ......|..+++.+.           ++..++|.+.|.+.+..+|+..+.+.++...+..+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~  177 (394)
T PRK11652        111 GVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTF  177 (394)
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence            11122 234566777766651           34468899999999988999999876665544443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.60  E-value=7.7e-05  Score=65.38  Aligned_cols=107  Identities=14%  Similarity=0.177  Sum_probs=72.4

Q ss_pred             hhhhhHHHhHH-hhhhhcccceeeeeec-----ccc----cc-ccccccc-cccccCCcc-hhhhhccccCCcch-----
Q psy5252         156 SPYLIGLLSEM-FRHSLQLGASTLVANA-----MLP----SS-LAPSLPF-SSSNSTSLP-LVSSLDETAHRSDE-----  217 (285)
Q Consensus       156 g~~~~G~l~d~-~~~~~~~~~~~~~~~~-----~~~----~~-~~~~~~~-~~~~~~~~~-~~~~~~~~~p~~~r-----  217 (285)
                      .++++|+++|| +|+|+.+....+....     ..+    .. +.+++.+ ..+++..=| ..+.+.|++|+++.     
T Consensus        77 t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~g  156 (498)
T COG3104          77 TPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGG  156 (498)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCC
Confidence            47799999999 5666554442211111     111    11 2222222 233444444 57888899988773     


Q ss_pred             --------hhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy5252         218 --------FLAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLLGSLYI  262 (285)
Q Consensus       218 --------~l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (285)
                              ++|+.++|.+.|++.+++||..+|...++.+.++.+.+.+..++.
T Consensus       157 Ft~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~  209 (498)
T COG3104         157 FTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHV  209 (498)
T ss_pred             ccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchh
Confidence                    278899999999999999999999999999999988888776543

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.58  E-value=3.2e-05  Score=70.31  Aligned_cols=108  Identities=10%  Similarity=0.077  Sum_probs=65.9

Q ss_pred             ccccchhhhhHHHhHHhhhhhccccee--eeeecc----cccc--cccccccc-ccccCCcchhhhhccccCCcchhhh-
Q psy5252         151 FGDAGSPYLIGLLSEMFRHSLQLGAST--LVANAM----LPSS--LAPSLPFS-SSNSTSLPLVSSLDETAHRSDEFLA-  220 (285)
Q Consensus       151 ~g~~~g~~~~G~l~d~~~~~~~~~~~~--~~~~~~----~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~r~l~-  220 (285)
                      ++..++.++.|+++|.+|||.......  ..++..    .+++  +..+..+. .+.+........++|+.|.+.|.++ 
T Consensus        89 l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~  168 (599)
T PF06609_consen   89 LASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGL  168 (599)
T ss_pred             HHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHh
Confidence            445555678999999999997554422  111111    1122  23333322 2233333445668999999999422 


Q ss_pred             ----------ccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy5252         221 ----------HKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLLG  258 (285)
Q Consensus       221 ----------~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (285)
                                ...+|.+...+..+.+|||.+++..+...++.+...+.
T Consensus       169 ~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~f  216 (599)
T PF06609_consen  169 AIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFF  216 (599)
T ss_pred             HHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence                      13567776666667789999998888777766655543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.58  E-value=5.9e-06  Score=72.78  Aligned_cols=104  Identities=13%  Similarity=0.107  Sum_probs=64.0

Q ss_pred             ccccchhhhhHHHhHHhhhhhcccceeee--ee---ccc-ccc--cccc-ccccccccC-CcchhhhhccccCCcchh--
Q psy5252         151 FGDAGSPYLIGLLSEMFRHSLQLGASTLV--AN---AML-PSS--LAPS-LPFSSSNST-SLPLVSSLDETAHRSDEF--  218 (285)
Q Consensus       151 ~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~---~~~-~~~--~~~~-~~~~~~~~~-~~~~~~~~~~~~p~~~r~--  218 (285)
                      ++..++.++.|.++||+|||+.+......  ++   ... ++.  +.+. .+.+.+.+. .......+.|.+|+++|.  
T Consensus        62 ~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~  141 (413)
T PRK15403         62 AGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKL  141 (413)
T ss_pred             HHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            66677788999999999999866542211  01   111 111  1111 111111111 122346677888887751  


Q ss_pred             ---------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy5252         219 ---------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIF  254 (285)
Q Consensus       219 ---------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~  254 (285)
                               ++..++|.+++.+.++.||++.|+..++..++..+.
T Consensus       142 ~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~  186 (413)
T PRK15403        142 MAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVG  186 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence                     456789999999999899999998877766665544

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=97.57  E-value=6.1e-06  Score=72.04  Aligned_cols=107  Identities=11%  Similarity=0.043  Sum_probs=65.9

Q ss_pred             hccccchhhhhHHHhHHhhhhhcccceeee--eec---cc-ccc--cccc-cccccccc-CCcchhhhhccccCCcchh-
Q psy5252         150 AFGDAGSPYLIGLLSEMFRHSLQLGASTLV--ANA---ML-PSS--LAPS-LPFSSSNS-TSLPLVSSLDETAHRSDEF-  218 (285)
Q Consensus       150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~~---~~-~~~--~~~~-~~~~~~~~-~~~~~~~~~~~~~p~~~r~-  218 (285)
                      .++..++.++.|+++||++||+.+......  +..   .. +..  +... .+...+.+ ......+.+.|.+|+++|. 
T Consensus        48 ~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~  127 (392)
T PRK10473         48 LAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAK  127 (392)
T ss_pred             HHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHH
Confidence            366667788999999999998765542211  111   11 111  1111 11111122 2334567888999998882 


Q ss_pred             ----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252         219 ----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL  256 (285)
Q Consensus       219 ----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (285)
                                ++..++|.+.+.+.+..+|+..+++.+.+.++..++..
T Consensus       128 ~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~  175 (392)
T PRK10473        128 VLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSL  175 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHH
Confidence                      44567898988888888999988877766655555443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=97.56  E-value=0.00016  Score=64.80  Aligned_cols=75  Identities=16%  Similarity=0.152  Sum_probs=60.4

Q ss_pred             cchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhh------hccCCchHHHHHhhHHHHHHHHHHHHhccCC
Q psy5252          10 STIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAF------SVMGAWPWSLRVTPVLGACAVLLILFFMEDP   83 (285)
Q Consensus        10 ~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~------~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~~   83 (285)
                      .|....+++|.+|+++|++++|+.+....+|..+++.+.+.+.      +.++ |++.|++.++++++..++.+++.||+
T Consensus       382 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~  460 (479)
T PRK10077        382 GPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFH-NGFSYWIYGCMGVLAALFMWKFVPET  460 (479)
T ss_pred             cchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhcc-CccHHHHHHHHHHHHHHHHHhccccC
Confidence            3677899999999999999999999999999988876665444      4565 89999988888777777766677776


Q ss_pred             cC
Q psy5252          84 ER   85 (285)
Q Consensus        84 ~~   85 (285)
                      ++
T Consensus       461 ~~  462 (479)
T PRK10077        461 KG  462 (479)
T ss_pred             CC
Confidence            54

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=97.56  E-value=1e-05  Score=73.04  Aligned_cols=123  Identities=11%  Similarity=-0.009  Sum_probs=69.4

Q ss_pred             HHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee--ee---ccc-ccc--cccc-cccccccc
Q psy5252         129 LYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV--AN---AML-PSS--LAPS-LPFSSSNS  199 (285)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~---~~~-~~~--~~~~-~~~~~~~~  199 (285)
                      .++.++.+.+.......     ++...+.+..|+++||+|||+........  ++   ... ++.  +..+ .+...+.+
T Consensus        35 ~l~~s~~~~~~~~~~~~-----l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~  109 (495)
T PRK14995         35 TLGASGNELLWIIDIYS-----LVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAA  109 (495)
T ss_pred             HhCCCHhHHHHHHHHHH-----HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            34444445554444332     44445567899999999999876552211  11   111 111  1111 11122222


Q ss_pred             CCcc-hhhhhccc-cCCcchh-----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252         200 TSLP-LVSSLDET-AHRSDEF-----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL  256 (285)
Q Consensus       200 ~~~~-~~~~~~~~-~p~~~r~-----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (285)
                      ...| ....+.+. .|+++|.           ++..+||.++|.+.++.+|++.|++...+.++..++..
T Consensus       110 ~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~  179 (495)
T PRK14995        110 MIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTA  179 (495)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHH
Confidence            2233 33445454 4667761           56689999999999999999999876655555444433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=97.55  E-value=0.0001  Score=65.80  Aligned_cols=65  Identities=17%  Similarity=0.161  Sum_probs=53.5

Q ss_pred             HHHhhcccCCchhHHHHHHHHHHhhHHHH-HHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252          15 TIISDLFVKDLRSQMLAFFYFAIPIGSGL-GYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus        15 ~~i~~~~~~~~rg~~~gi~~~~~~iG~~~-g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      .++.|.+|+++||+++|+.+....+|..+ +|.+.+.+.++.+ |+..|++.+..+++..+......
T Consensus       370 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~  435 (452)
T PRK11273        370 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIVVM  435 (452)
T ss_pred             HHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHh
Confidence            45679999999999999999888888654 7999999999986 99999988887776665554443

>KOG1330|consensus

Probab=97.54  E-value=4e-06  Score=72.48  Aligned_cols=130  Identities=9%  Similarity=-0.001  Sum_probs=82.0

Q ss_pred             HhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhccccee---eeeec--ccccc---cc-cccccccc-cc
Q psy5252         130 YVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGAST---LVANA--MLPSS---LA-PSLPFSSS-NS  199 (285)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~---~~~~~--~~~~~---~~-~~~~~~~~-~~  199 (285)
                      ++.++...|......+     +...+..+++|.++||+.|++.+..+.   ....+  .+...   +. .=++.+.+ .+
T Consensus        63 fni~~s~~Gll~~vf~-----v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs  137 (493)
T KOG1330|consen   63 FNISDSELGLLQTVFI-----VVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEAS  137 (493)
T ss_pred             cCCCchhccchhHHHH-----HHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence            5666666666655444     556666789999999999997665532   11111  11111   11 11222223 34


Q ss_pred             CCcchhhhhccccCCcchh-----------hhccccchhhhhhhhhhh-hHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy5252         200 TSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLA-LQYALFITSFIEVLGGIFFLLGSLYIVQ  264 (285)
Q Consensus       200 ~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (285)
                      .+...++.++|.+|.++|.           .|.++|=..++.+.++.+ ||++|...+++.++.+++.++..+..+|
T Consensus       138 ~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r  214 (493)
T KOG1330|consen  138 YSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPER  214 (493)
T ss_pred             hcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence            4445688999999999992           344555555566677666 9999998888888888777776654443

>PRK15011 sugar efflux transporter B; Provisional

Probab=97.52  E-value=0.00019  Score=62.76  Aligned_cols=74  Identities=8%  Similarity=0.073  Sum_probs=58.7

Q ss_pred             cccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccC
Q psy5252           6 EASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMED   82 (285)
Q Consensus         6 ~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~   82 (285)
                      .+...+....+..|.+| ++|++++++++...++|..+++.+++.+.+.++ |+..|++.+++.++..++. ++.||
T Consensus       319 ~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g-~~~~~~~~~~~~~~~~~~~-~~~~~  392 (393)
T PRK15011        319 IGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN-YHAVFWFALVMIIATLFCL-LRIKD  392 (393)
T ss_pred             HHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHH-HhhcC
Confidence            34444556677888886 569999999999999999999999999999886 9999998887777665444 44454

>PRK11010 ampG muropeptide transporter; Validated

Probab=97.49  E-value=0.0016  Score=58.75  Aligned_cols=74  Identities=15%  Similarity=0.150  Sum_probs=61.8

Q ss_pred             ccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccC
Q psy5252           7 ASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMED   82 (285)
Q Consensus         7 ~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~   82 (285)
                      +...+...++..+..+++.+++..++.++..++|..+++++.|.+.+.+| |+..|.+.++++++..++... +++
T Consensus       331 g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G-~~~~f~~~~~~~l~~l~~~~~-~~~  404 (491)
T PRK11010        331 GMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHG-WPTFYLFSVAAAVPGLLLLLV-CRQ  404 (491)
T ss_pred             HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHH-HHh
Confidence            44556677888899999999999999999999999999999999999886 999999888888777655544 344

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=97.48  E-value=5.6e-05  Score=64.76  Aligned_cols=130  Identities=13%  Similarity=0.027  Sum_probs=83.6

Q ss_pred             HHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee-------eecc--ccc--c-ccccccccc
Q psy5252         129 LYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV-------ANAM--LPS--S-LAPSLPFSS  196 (285)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~-------~~~~--~~~--~-~~~~~~~~~  196 (285)
                      .+++++++.+...+.-.    +.|. +.+++.|.+.||+|.|+......++       .++.  .+.  . +..+.++..
T Consensus        43 ~~~LS~~q~~ll~aiPi----l~Ga-llRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~  117 (417)
T COG2223          43 DFGLSEGQKGLLVAIPI----LVGA-LLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGL  117 (417)
T ss_pred             ccCCCHHHHHHHHHHHH----HHhH-HHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhc
Confidence            45666666655554433    4444 4599999999999999866553211       1111  222  1 345555666


Q ss_pred             cccCCcchhhhhccccCCcchh----------hhccccchhhhhhhhhhh---hHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy5252         197 SNSTSLPLVSSLDETAHRSDEF----------LAHKSDEFLAHKSDEFLA---LQYALFITSFIEVLGGIFFLLGSLYIV  263 (285)
Q Consensus       197 ~~~~~~~~~~~~~~~~p~~~r~----------l~~~~~p~~~G~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (285)
                      .++.++....++++.+||+++.          +|..+..+++..+....+   |+.+..+....+++.++...+.....+
T Consensus       118 ~GasFav~m~~~s~~fP~~~qG~AlGI~g~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p  197 (417)
T COG2223         118 AGASFAVGMPNASFFFPKEKQGLALGIAGAGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVP  197 (417)
T ss_pred             ccceehcccccccccCChhhhhHHHHHhccccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence            6677777778899999999982          333555666666777777   888887777777777776666555433

>KOG2816|consensus

Probab=97.47  E-value=0.0012  Score=58.62  Aligned_cols=82  Identities=13%  Similarity=0.254  Sum_probs=72.2

Q ss_pred             cccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccCCcC
Q psy5252           6 EASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDPER   85 (285)
Q Consensus         6 ~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~~~~   85 (285)
                      .+.......++++|....|+|...+|+.+.....+..++|.+++.+.+.++ .-..|.+..+..++..+...+++||+..
T Consensus       126 ~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~-~a~~f~ia~~~~~~~~~y~~~~l~Esl~  204 (463)
T KOG2816|consen  126 FSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLG-IALVFLIAAASGILSLLYMLLFLPESLQ  204 (463)
T ss_pred             hhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHhhccccccC
Confidence            345567788999999999999999999999999999999999999999886 8889999999998888888889998765


Q ss_pred             ccc
Q psy5252          86 GEA   88 (285)
Q Consensus        86 ~~~   88 (285)
                      +..
T Consensus       205 ~~~  207 (463)
T KOG2816|consen  205 EKE  207 (463)
T ss_pred             ccc
Confidence            443

>TIGR00899 2A0120 sugar efflux transporter

Probab=97.46  E-value=0.00023  Score=61.48  Aligned_cols=77  Identities=12%  Similarity=0.043  Sum_probs=62.2

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      .|++.+...+....++.|..|+ ++++++++++...++|..+++.+.+.+.+..+ |+..|++.+++.++..++. .+++
T Consensus       298 ~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~-~~~~  374 (375)
T TIGR00899       298 NAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWS-YHAVYWFAIVMLIVALFCL-LLIK  374 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHH-heec
Confidence            3566666778888888998865 67799999999999999999999999999886 9999998888776665443 4443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>KOG2615|consensus

Probab=97.46  E-value=5.2e-05  Score=64.21  Aligned_cols=84  Identities=11%  Similarity=-0.030  Sum_probs=57.1

Q ss_pred             hccccchhhhhHHHhHHhhhhhcccceeeeee--cccccc---c---cc-cccccccccCCcchhhhhccccCCcchh--
Q psy5252         150 AFGDAGSPYLIGLLSEMFRHSLQLGASTLVAN--AMLPSS---L---AP-SLPFSSSNSTSLPLVSSLDETAHRSDEF--  218 (285)
Q Consensus       150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~~~--~~~~~~---~---~~-~~~~~~~~~~~~~~~~~~~~~~p~~~r~--  218 (285)
                      .++-.+..+..|.++|+.|||.++..+.+...  ......   .   .+ =...+...+..++..+.++|.+++++|.  
T Consensus        78 ~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAiisdV~sek~r~l~  157 (451)
T KOG2615|consen   78 SILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRAIISDVVSEKYRPLG  157 (451)
T ss_pred             HHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHhhcChhhccce
Confidence            35566677899999999999987655432211  111111   1   11 1112234777788899999999999982  


Q ss_pred             ---------hhccccchhhhhhhh
Q psy5252         219 ---------LAHKSDEFLAHKSDE  233 (285)
Q Consensus       219 ---------l~~~~~p~~~G~~~~  233 (285)
                               +|..+||+++|++.+
T Consensus       158 ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  158 MSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             eeeeehhhhcchhhcchhhhHHHh
Confidence                     666899999999988

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.45  E-value=0.00033  Score=62.70  Aligned_cols=80  Identities=15%  Similarity=0.235  Sum_probs=70.4

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      .|+..|+.++...++.++..|+++.+..+|++....-....+||.+.+.+.+..++-|+.+....++.++..+++ ..++
T Consensus       390 ~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~  468 (477)
T PF11700_consen  390 IGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL-FFVD  468 (477)
T ss_pred             HHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-hhcc
Confidence            588899999999999999999999999999999999999999999999999988889999988887777666554 4444


Q ss_pred             C
Q psy5252          82 D   82 (285)
Q Consensus        82 ~   82 (285)
                      .
T Consensus       469 ~  469 (477)
T PF11700_consen  469 V  469 (477)
T ss_pred             c
Confidence            3

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=97.43  E-value=0.0001  Score=64.67  Aligned_cols=81  Identities=17%  Similarity=0.271  Sum_probs=62.6

Q ss_pred             ccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC--C-chHHHHHhhHHHHHHHHHHHHh
Q psy5252           3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG--A-WPWSLRVTPVLGACAVLLILFF   79 (285)
Q Consensus         3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g--~-wr~~f~i~~~~~~~~~~l~~~~   79 (285)
                      |++.+...|...+++.+..|+++||+.+|+++....+|..+||.+++.+.+..+  + -...|++.+++.++..+.....
T Consensus       308 ~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (400)
T PRK11646        308 YIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLALYWQ  387 (400)
T ss_pred             HHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHH
Confidence            556667778888999999999999999999999999999999999999998742  1 2456666666666665554444


Q ss_pred             ccCC
Q psy5252          80 MEDP   83 (285)
Q Consensus        80 ~~~~   83 (285)
                      .+++
T Consensus       388 ~~~~  391 (400)
T PRK11646        388 FSQK  391 (400)
T ss_pred             Hhhc
Confidence            4444

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=97.42  E-value=0.00019  Score=64.29  Aligned_cols=62  Identities=8%  Similarity=0.048  Sum_probs=51.6

Q ss_pred             HHHhhcccCCchhHHHHHHHHHHhh-HHHHHHHHHHHhhh------------ccCCchHHHHHhhHHHHHHHHHHH
Q psy5252          15 TIISDLFVKDLRSQMLAFFYFAIPI-GSGLGYIVGSTAFS------------VMGAWPWSLRVTPVLGACAVLLIL   77 (285)
Q Consensus        15 ~~i~~~~~~~~rg~~~gi~~~~~~i-G~~~g~~l~~~l~~------------~~g~wr~~f~i~~~~~~~~~~l~~   77 (285)
                      ....|.+|+++||++.|+.+...++ |..++|.+.|.+.+            ..+ |+..|++..+..++..+...
T Consensus       372 ~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        372 VAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTG-WAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             HHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccC-hHHHHHHHHHHHHHHHHHHH
Confidence            5667999999999999999988886 77999999999999            454 99999988777766554443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.42  E-value=0.00074  Score=59.87  Aligned_cols=74  Identities=16%  Similarity=0.299  Sum_probs=56.7

Q ss_pred             cccchhHHHHhhccc--CCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccC
Q psy5252           8 SYSTIAPTIISDLFV--KDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMED   82 (285)
Q Consensus         8 ~~~~~~~~~i~~~~~--~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~   82 (285)
                      ....++-+++.|...  +++|+...+.......+|.+++..++|.+.+..+ +|..|.+.+.+..+..+...+..+|
T Consensus       102 ~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~-~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  102 FADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG-PQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             HHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC-CeEEehHHHHHHHHHHHHHHHhhhh
Confidence            334445555555552  3347888999999999999999999999999885 9999999988877776666666665

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=97.41  E-value=5.7e-05  Score=66.94  Aligned_cols=83  Identities=7%  Similarity=-0.045  Sum_probs=46.4

Q ss_pred             HhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee-------eeccc----ccc---cccccccc
Q psy5252         130 YVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV-------ANAML----PSS---LAPSLPFS  195 (285)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~-------~~~~~----~~~---~~~~~~~~  195 (285)
                      +++++.+.+...+...     ++..++.+..|++.||+|.|+......+.       .++..    ++.   +....+..
T Consensus        65 ~~ls~~q~g~l~ai~~-----l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~G  139 (462)
T PRK15034         65 FNFTTDQLFLLTALPS-----VSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCG  139 (462)
T ss_pred             cCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHH
Confidence            4555555555444333     44445677889999999999766553211       11111    111   12222222


Q ss_pred             ccccCCcchhhhhccccCCcch
Q psy5252         196 SSNSTSLPLVSSLDETAHRSDE  217 (285)
Q Consensus       196 ~~~~~~~~~~~~~~~~~p~~~r  217 (285)
                      .+.....+....+.+.+|+++|
T Consensus       140 igg~~f~~~~~~vs~wfp~~~r  161 (462)
T PRK15034        140 FAGANFASSMGNISFFFPKAKQ  161 (462)
T ss_pred             HHHHhHHHHHHHHHHHCCHhHh
Confidence            2234445566778899999987

>PRK03893 putative sialic acid transporter; Provisional

Probab=97.40  E-value=0.00021  Score=64.42  Aligned_cols=60  Identities=22%  Similarity=0.261  Sum_probs=51.4

Q ss_pred             ccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHH
Q psy5252           9 YSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLG   69 (285)
Q Consensus         9 ~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~   69 (285)
                      ..+...+++.|.+|+++|++.+|+++....+|..+||.+++.+.+.++ |+..+...+...
T Consensus       383 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g-~~~~~~~~~~~~  442 (496)
T PRK03893        383 ISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLD-LGTALASLSFSL  442 (496)
T ss_pred             cchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCC-hHHHHHHHHHHH
Confidence            345667789999999999999999999999999999999999999886 998876555433

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=97.22  E-value=0.00027  Score=62.74  Aligned_cols=69  Identities=17%  Similarity=0.119  Sum_probs=57.8

Q ss_pred             HHHhhcccCCchhHHHHHHHHHHhhH-HHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccCCc
Q psy5252          15 TIISDLFVKDLRSQMLAFFYFAIPIG-SGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDPE   84 (285)
Q Consensus        15 ~~i~~~~~~~~rg~~~gi~~~~~~iG-~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~~~   84 (285)
                      ....|.+|+++|++++|+.+....+| .+++|.+.+.+.++.+ |...|++..+..++..++..+.++|.+
T Consensus       368 ~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       368 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             HHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            45679999999999999999887776 5789999999999886 999999888777777777777777643

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=97.18  E-value=0.0002  Score=61.97  Aligned_cols=67  Identities=15%  Similarity=0.235  Sum_probs=55.2

Q ss_pred             ccccccccchhHHHHhhcccCCchhHHHHH-HHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHH
Q psy5252           3 GIGEASYSTIAPTIISDLFVKDLRSQMLAF-FYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLG   69 (285)
Q Consensus         3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi-~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~   69 (285)
                      |++.+...+...++++|.+|+++|++++++ ++.+..+|..++|.+++.+.++.++|+..++...+..
T Consensus       323 g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~  390 (394)
T TIGR00883       323 ALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA  390 (394)
T ss_pred             HHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence            455667778889999999999999999998 4566778999999999999998765888777665544

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09952 shikimate transporter; Provisional

Probab=97.18  E-value=0.0011  Score=58.98  Aligned_cols=79  Identities=14%  Similarity=0.238  Sum_probs=59.7

Q ss_pred             ccccccccchhHHHHhhcccCCchhHHHHHHH-HHHhhHHHHHHHHHHHhhhcc-CCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252           3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFY-FAIPIGSGLGYIVGSTAFSVM-GAWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus         3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~-~~~~iG~~~g~~l~~~l~~~~-g~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      |++.+...+...++++|.+|++.|+...++.+ .+..+|..++|.+.+++.+.. ++|+..+...++..++..+.. +.+
T Consensus       354 ~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~-~~~  432 (438)
T PRK09952        354 NIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTA-LLM  432 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-HHc
Confidence            34445556777889999999999999999854 455689999999999998754 358888888777777666554 445


Q ss_pred             cC
Q psy5252          81 ED   82 (285)
Q Consensus        81 ~~   82 (285)
                      +|
T Consensus       433 ~~  434 (438)
T PRK09952        433 KD  434 (438)
T ss_pred             cc
Confidence            55

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.14  E-value=0.00039  Score=64.62  Aligned_cols=43  Identities=5%  Similarity=0.081  Sum_probs=31.2

Q ss_pred             HHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccce
Q psy5252         129 LYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGAS  176 (285)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~  176 (285)
                      .++++..+.|...+...     ++..++.++.|++.||.+|++.+...
T Consensus        62 ~F~lss~~~G~i~s~~~-----i~~~~~~i~v~~~~~r~~r~~~i~~g  104 (633)
T TIGR00805        62 RFKLSTSSSGLINGSYE-----IGNLLLIIFVSYFGTKLHRPIVIGIG  104 (633)
T ss_pred             hhCCCCCcceeeeehhh-----HHHHHHHHHHHHhhcccCcceEEEec
Confidence            45666666666655443     66666778999999999999877653

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00898 2A0119 cation transport protein

Probab=97.13  E-value=0.00063  Score=61.53  Aligned_cols=78  Identities=14%  Similarity=0.054  Sum_probs=61.3

Q ss_pred             cccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccCC
Q psy5252           4 IGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDP   83 (285)
Q Consensus         4 ~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~~   83 (285)
                      .+.+..++....+.+|.+|++.|++++|+.+....+|.+++|.+.+ +.+ .+ +..++.+.++..++..++. .++||+
T Consensus       422 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~-~~~~~~~~~~~~~~~~~~~-~~lpet  497 (505)
T TIGR00898       422 FGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE-KW-LFLPLVLFGGLALLAGILT-LFLPET  497 (505)
T ss_pred             HHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-HH-HhhHHHHHHHHHHHHHHHH-HcCcCC
Confidence            3444556778889999999999999999999999999999999998 444 43 7778888887777766544 566776


Q ss_pred             cC
Q psy5252          84 ER   85 (285)
Q Consensus        84 ~~   85 (285)
                      +.
T Consensus       498 ~~  499 (505)
T TIGR00898       498 KG  499 (505)
T ss_pred             CC
Confidence            54

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.12  E-value=5e-05  Score=55.41  Aligned_cols=106  Identities=13%  Similarity=0.094  Sum_probs=64.6

Q ss_pred             ccccchhhhhHHHhHHhhhhhcccceeee--ee---ccc-ccc--ccc-ccccccc-ccCCcchhhhhccccCCcchh--
Q psy5252         151 FGDAGSPYLIGLLSEMFRHSLQLGASTLV--AN---AML-PSS--LAP-SLPFSSS-NSTSLPLVSSLDETAHRSDEF--  218 (285)
Q Consensus       151 ~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~---~~~-~~~--~~~-~~~~~~~-~~~~~~~~~~~~~~~p~~~r~--  218 (285)
                      ++..++.++.|++.||+++|+........  +.   ... .+.  ... ......+ ..........+.|.+|+++|.  
T Consensus         9 ~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (141)
T TIGR00880         9 LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVA   88 (141)
T ss_pred             hHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHH
Confidence            44555677899999999998765442211  00   011 111  111 1111111 222334567788999998871  


Q ss_pred             ---------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252         219 ---------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL  256 (285)
Q Consensus       219 ---------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (285)
                               ++..++|.+.|.+.+..+|+..+.....+..+..+...
T Consensus        89 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (141)
T TIGR00880        89 LGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLA  135 (141)
T ss_pred             HHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHh
Confidence                     56689999999999988998888876666555554443

>PRK12307 putative sialic acid transporter; Provisional

Probab=97.09  E-value=0.00083  Score=59.24  Aligned_cols=51  Identities=14%  Similarity=0.184  Sum_probs=44.3

Q ss_pred             cchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHH
Q psy5252          10 STIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWS   61 (285)
Q Consensus        10 ~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~   61 (285)
                      .+....++.|.+|+++|++++|+.+....+|..++|.+.+++.+.++ +...
T Consensus       339 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g-~~~~  389 (426)
T PRK12307        339 GGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMG-LGAA  389 (426)
T ss_pred             hHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc-HHHH
Confidence            34556788999999999999999999999999999999999999875 6554

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=97.08  E-value=0.0013  Score=59.45  Aligned_cols=76  Identities=9%  Similarity=0.012  Sum_probs=59.8

Q ss_pred             cchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC---------CchHHHHHhhHHHHHHHHHHHHhc
Q psy5252          10 STIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG---------AWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus        10 ~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g---------~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      .+....+.+|.+|.+.|++++|+.+....+|..+++.+.+.+.+..+         ++...|++.++..++..+. .+++
T Consensus       410 ~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~-~~~l  488 (502)
T TIGR00887       410 NATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF-TLLI  488 (502)
T ss_pred             CchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH-heEe
Confidence            45566778999999999999999999999999999999999887321         2566788888777766544 4677


Q ss_pred             cCCcCc
Q psy5252          81 EDPERG   86 (285)
Q Consensus        81 ~~~~~~   86 (285)
                      ||++.+
T Consensus       489 pEt~~~  494 (502)
T TIGR00887       489 PETKGK  494 (502)
T ss_pred             ccCCCC
Confidence            887653

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=97.04  E-value=0.0012  Score=57.59  Aligned_cols=69  Identities=12%  Similarity=0.003  Sum_probs=59.0

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHH-HHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHH
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFY-FAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAV   73 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~-~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~   73 (285)
                      .|+..+...++...++.+. |+++|++..++++ ....+|..+++.++|++.++++ + ..|++.++++++..
T Consensus       303 ~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g-~-~~~~~~~~~~~~~~  372 (382)
T TIGR00902       303 HCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG-A-GTFVFMAIIAAAAF  372 (382)
T ss_pred             HHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHH
Confidence            5777888999999999998 9999999999986 5678999999999999999985 6 66777777776554

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.02  E-value=0.0013  Score=57.11  Aligned_cols=73  Identities=18%  Similarity=0.332  Sum_probs=63.4

Q ss_pred             cccccccccchhHHHHhhcccCC---chhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHH
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKD---LRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLL   75 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~---~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l   75 (285)
                      .++|.|++=|...++.+|.++++   +|.+...+++.+.|+|..++..+.+++.+.++ |.+.|.+.++..++..+.
T Consensus        43 ia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~-~~~~f~i~~~~~~~~~~~  118 (372)
T PF00854_consen   43 IAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYG-WFLGFGIPAIGMLLALIV  118 (372)
T ss_dssp             HHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS--HHHHHHHHHHHHHHHHHH
T ss_pred             HHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccc-hhhhhhHHHHHHHHHHHH
Confidence            57889999999999999999886   46778889999999999999999999999886 999999998877766533

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=96.99  E-value=0.095  Score=47.13  Aligned_cols=100  Identities=19%  Similarity=0.229  Sum_probs=64.1

Q ss_pred             HHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh--------ccCCchHHHH----HhhHHHHHHHHHHHHhcc
Q psy5252          14 PTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS--------VMGAWPWSLR----VTPVLGACAVLLILFFME   81 (285)
Q Consensus        14 ~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~--------~~g~wr~~f~----i~~~~~~~~~~l~~~~~~   81 (285)
                      ..+..|.++.+|-.|..+++..+.++|.+++..+..++.+        ..++|...+.    +..+.+++...+ ...+.
T Consensus       166 W~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~-~~~~~  244 (491)
T PF03219_consen  166 WGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILL-YRYMN  244 (491)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            5778999999999999999999999999999999999888        1123654332    222222222222 22222


Q ss_pred             -CC---cCc---cccCccccccccHHHHHHHHhhhhhhHH
Q psy5252          82 -DP---ERG---EAEGRVTEERTSFGEDIRALCKNHRETW  114 (285)
Q Consensus        82 -~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (285)
                       +.   ++.   ..++++++++.+..++++.++++|.+..
T Consensus       245 ~~vl~~~~~~~~~~~~kk~k~k~s~~es~k~l~kS~yL~~  284 (491)
T PF03219_consen  245 KNVLTDPRFYPSAKKKKKKKPKMSLKESFKLLLKSKYLLC  284 (491)
T ss_pred             HHccCccccchhhhcccccCCCccHHHHHHHHHhCHHHHH
Confidence             11   111   1112223455678899999999888765

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>TIGR00897 2A0118 polyol permease family

Probab=96.98  E-value=0.0018  Score=56.89  Aligned_cols=72  Identities=13%  Similarity=0.131  Sum_probs=56.2

Q ss_pred             ccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHH
Q psy5252           3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLIL   77 (285)
Q Consensus         3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~   77 (285)
                      |++.+...+ ..+.+.+.. |++|++++|+.+....+|..++|.+.+.+.+..| |+..|++.+++.++..++..
T Consensus       327 G~~~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g-~~~~~~~~a~~~~i~~~~~~  398 (402)
T TIGR00897       327 GIFLAGYVP-LAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG-AIGVVWIFAALYVVSAFLTA  398 (402)
T ss_pred             HHHHHHHHH-HHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHHHH
Confidence            344444333 345666765 5689999999999999999999999999999886 99999999888776665443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10504 putative transporter; Provisional

Probab=96.90  E-value=0.0014  Score=58.63  Aligned_cols=55  Identities=11%  Similarity=0.200  Sum_probs=48.7

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG   56 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g   56 (285)
                      +|++.+...+....++.+.+|+|+++.++|+.+....+|..+|+.+++.+.+..+
T Consensus       363 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g  417 (471)
T PRK10504        363 QGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFG  417 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4566777788888999999999999999999999999999999999999887654

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=96.90  E-value=0.002  Score=56.27  Aligned_cols=67  Identities=12%  Similarity=0.032  Sum_probs=55.7

Q ss_pred             cccccchhHHHHhhcccC-CchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHH
Q psy5252           6 EASYSTIAPTIISDLFVK-DLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAV   73 (285)
Q Consensus         6 ~~~~~~~~~~~i~~~~~~-~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~   73 (285)
                      .+...+...+.+.+..++ +++++.+++.++..++|..++|.++|.+.+..| ++..|.+.+++.++..
T Consensus       317 ~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G-~~~~f~~~~~~~l~a~  384 (390)
T TIGR02718       317 TGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG-YAGGFLSGTVLAVLAI  384 (390)
T ss_pred             HHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHH
Confidence            455556667777777776 789999999999999999999999999999886 9999998877666544

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00901 2A0125 AmpG-related permease

Probab=96.87  E-value=0.00015  Score=62.41  Aligned_cols=55  Identities=16%  Similarity=-0.004  Sum_probs=41.5

Q ss_pred             cchhhhhccccCCcchh-----------hhccccchhhhhhhhhhh--------hHHHHHHHHHHHHHHHHHHH
Q psy5252         202 LPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLA--------LQYALFITSFIEVLGGIFFL  256 (285)
Q Consensus       202 ~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~--------~~~~~~~~~~~~~~~~~~~~  256 (285)
                      .+..+++.|.+|+++|.           +|..++|.+.+.+.++.+        |+..|++.++..++..+..+
T Consensus       102 ~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~  175 (356)
T TIGR00901       102 IALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTL  175 (356)
T ss_pred             HHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence            44567889999998882           556788888888888888        99999887776666544433

>TIGR00788 fbt folate/biopterin transporter

Probab=96.87  E-value=0.0033  Score=56.43  Aligned_cols=80  Identities=15%  Similarity=0.185  Sum_probs=58.4

Q ss_pred             ccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC------CchHHHHHhhHHHHHHHHHH
Q psy5252           3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG------AWPWSLRVTPVLGACAVLLI   76 (285)
Q Consensus         3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g------~wr~~f~i~~~~~~~~~~l~   76 (285)
                      +++.+..+.+...++.+..|+++++...+++++..++|..+++.+++.+.+..|      +.++...+.....-+..+..
T Consensus       362 ~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~  441 (468)
T TIGR00788       362 EVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPL  441 (468)
T ss_pred             HHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHH
Confidence            445556667779999999999999999999999999999999999999998764      23333333333333333344


Q ss_pred             HHhccC
Q psy5252          77 LFFMED   82 (285)
Q Consensus        77 ~~~~~~   82 (285)
                      .+++|+
T Consensus       442 ~~llP~  447 (468)
T TIGR00788       442 LHLLPR  447 (468)
T ss_pred             HHhCCC
Confidence            457786

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=96.86  E-value=0.0011  Score=57.13  Aligned_cols=83  Identities=16%  Similarity=0.177  Sum_probs=69.1

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      +.|...|+.++.+-++.++.+|++|-++.+|+++...-.+..+||.+-+.+.+..++-|..+....++..+.. +....+
T Consensus       350 l~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl-~~L~~v  428 (438)
T COG2270         350 LVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGL-LLLLRV  428 (438)
T ss_pred             HHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhH-hhEEee
Confidence            3578899999999999999999999999999999999999999999999999988888888776666555444 334455


Q ss_pred             cCCc
Q psy5252          81 EDPE   84 (285)
Q Consensus        81 ~~~~   84 (285)
                      |++.
T Consensus       429 ~~~~  432 (438)
T COG2270         429 KVPG  432 (438)
T ss_pred             cCCC
Confidence            5543

>KOG0255|consensus

Probab=96.80  E-value=0.00033  Score=63.70  Aligned_cols=103  Identities=15%  Similarity=0.043  Sum_probs=65.5

Q ss_pred             hccccchhhhhHHHhHHhhhhhcccceeee-----eecccccc--c-----cccccccccccCCcchhhhhccccCCcch
Q psy5252         150 AFGDAGSPYLIGLLSEMFRHSLQLGASTLV-----ANAMLPSS--L-----APSLPFSSSNSTSLPLVSSLDETAHRSDE  217 (285)
Q Consensus       150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~-----~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~p~~~r  217 (285)
                      .+|.++|+++.|.++|++|||+......+.     ....+...  .     ++.++..  .+.....+..++|.+++++|
T Consensus       128 ~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~--~~~~~~~~~~~~E~~~~~~R  205 (521)
T KOG0255|consen  128 FLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFG--SGPLTVGFGLVAEIVSPKQR  205 (521)
T ss_pred             HHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhc--cchhHHhHhhheeecCcchh
Confidence            488888999999999999999766553211     11111111  1     1111111  33444456778999999999


Q ss_pred             h----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252         218 F----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL  256 (285)
Q Consensus       218 ~----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (285)
                      .          .+..++|...+++..  +||+.++..++..++..+.++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~  252 (521)
T KOG0255|consen  206 GLALTLGGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWF  252 (521)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHH
Confidence            3          233566666666666  899988887777666655533

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=96.80  E-value=0.0018  Score=57.37  Aligned_cols=56  Identities=13%  Similarity=0.259  Sum_probs=47.3

Q ss_pred             cccccccccchhHHHHhhccc-------CCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCc
Q psy5252           2 VGIGEASYSTIAPTIISDLFV-------KDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAW   58 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~-------~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~w   58 (285)
                      .|++.+...+...++++|..+       ++++|..+|+++....+|..+++.+.+.+.+..| |
T Consensus       321 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G-~  383 (437)
T TIGR00792       321 AGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG-Y  383 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C
Confidence            356777778888899988865       5568999999999999999999999999988764 5

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG3762|consensus

Probab=96.79  E-value=0.0021  Score=57.14  Aligned_cols=77  Identities=18%  Similarity=0.235  Sum_probs=67.7

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHH-hhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHH
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAI-PIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILF   78 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~-~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~   78 (285)
                      ++|+..+.++.++.+++++..||+-|..+.++.+... .+|-.+|.+++|.+...++ -|..|.+.++.+++.+++...
T Consensus       468 lqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg-~~ttf~~~giAcl~~l~~~~~  545 (618)
T KOG3762|consen  468 LQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG-ARTTFRIFGIACLVTLALFIS  545 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh-hHHHHHHHHHHHHHHHHHHHH
Confidence            4788889999999999999999999999999997665 7999999999999999996 899999999888877655433

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=96.68  E-value=0.0015  Score=57.54  Aligned_cols=79  Identities=20%  Similarity=0.375  Sum_probs=66.6

Q ss_pred             cccccccccchhHHHHhhcccCC--chhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHh
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKD--LRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFF   79 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~--~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~   79 (285)
                      .++|.|.+=|...++++|.+|++  +|-..+++++.+.|+|..++|.+.+++.+.++ |+..|-+.++-..... +.+..
T Consensus       127 I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g-~~~gF~~aavGm~~gl-~~f~~  204 (498)
T COG3104         127 IIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYG-WHVGFGLAAVGMIIGL-VIFLL  204 (498)
T ss_pred             HHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHHHH-HHHHH
Confidence            46889999999999999999986  47788999999999999999999999999997 9999998877655554 44455


Q ss_pred             ccC
Q psy5252          80 MED   82 (285)
Q Consensus        80 ~~~   82 (285)
                      .|.
T Consensus       205 ~~r  207 (498)
T COG3104         205 GRR  207 (498)
T ss_pred             ccc
Confidence            543

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=96.59  E-value=0.0064  Score=53.35  Aligned_cols=79  Identities=13%  Similarity=-0.029  Sum_probs=54.8

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      .|++.+...+...+...+ .++++||+..++++....+|..+|+.+.+.+.+..+ +....+...+..++...+...+.+
T Consensus       319 ~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  396 (406)
T PRK15402        319 YAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGG-NGLFNLFNLANGLLWLLLVRIFLK  396 (406)
T ss_pred             HHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCc-hHHHHHHHHHHHHHHHHHHHHHhc
Confidence            355556555655555544 345899999999999999999999999999988775 655555555555554444444444


Q ss_pred             C
Q psy5252          82 D   82 (285)
Q Consensus        82 ~   82 (285)
                      +
T Consensus       397 ~  397 (406)
T PRK15402        397 D  397 (406)
T ss_pred             c
Confidence            4

>KOG2532|consensus

Probab=96.53  E-value=0.00019  Score=63.96  Aligned_cols=126  Identities=12%  Similarity=-0.021  Sum_probs=78.7

Q ss_pred             hcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee---eecccccc--c--ccc----cccccc-c
Q psy5252         131 VVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV---ANAMLPSS--L--APS----LPFSSS-N  198 (285)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~---~~~~~~~~--~--~~~----~~~~~~-~  198 (285)
                      ..+.++.+...+..     ..|.+++.+..|.+.||+|.|++.....+.   ..+..|..  .  ...    ++-+.+ .
T Consensus        69 ~ws~~~k~~i~ss~-----~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g  143 (466)
T KOG2532|consen   69 DWSSTEKGLIFSSF-----FWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQG  143 (466)
T ss_pred             cCCHHHHHHHHHHH-----HHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHh
Confidence            33444444444433     488888888999999999999765542211   11111110  0  000    000111 2


Q ss_pred             cCCcchhhhhccccCCcchh-----------hhccccchhhhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHhhH
Q psy5252         199 STSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEF-LALQYALFITSFIEVLGGIFFLLGSLY  261 (285)
Q Consensus       199 ~~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (285)
                      ........+.++-.|+++|.           +|+.++-.+.|.+.+. .||+..|++.+++.++-.++++.....
T Consensus       144 ~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d  218 (466)
T KOG2532|consen  144 VLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSD  218 (466)
T ss_pred             HHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence            23334567778889999982           5556676788888888 899999999988888877777766553

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=96.48  E-value=0.41  Score=42.57  Aligned_cols=101  Identities=13%  Similarity=0.064  Sum_probs=65.9

Q ss_pred             HHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCC---------chHHHHHhhHHHHHHHHHHHHhccCCc
Q psy5252          14 PTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGA---------WPWSLRVTPVLGACAVLLILFFMEDPE   84 (285)
Q Consensus        14 ~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~---------wr~~f~i~~~~~~~~~~l~~~~~~~~~   84 (285)
                      .....|.+..||-.|-.++++.+.+++..++..+..++..+...         -+..+.+.++.+++...+.++.-+...
T Consensus       170 w~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il  249 (509)
T COG3202         170 WQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVL  249 (509)
T ss_pred             HHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            35677888899999999999999999999999999998874321         234455555555554444433322211


Q ss_pred             Ccc-------ccCccccccccHHHHHHHHhhhhhhHH
Q psy5252          85 RGE-------AEGRVTEERTSFGEDIRALCKNHRETW  114 (285)
Q Consensus        85 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (285)
                      +.+       .++++++.+....+.++.+.|+|.+..
T Consensus       250 ~~~~f~~~~~~kk~~~k~k~~~~~s~k~i~~SkyL~~  286 (509)
T COG3202         250 TDPLFYLRAKKKKKKKKLKLGLIESFKMILRSKYLGA  286 (509)
T ss_pred             cCcchhHHHhcccccccccCcHHHHHHHHHhhhHHHH
Confidence            111       111223344567888999999887765

>PRK03699 putative transporter; Provisional

Probab=96.44  E-value=0.0038  Score=54.56  Aligned_cols=75  Identities=19%  Similarity=0.186  Sum_probs=58.1

Q ss_pred             ccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHh
Q psy5252           3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFF   79 (285)
Q Consensus         3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~   79 (285)
                      |++.+..++...++..+..| +++++..+.......+|..++|.+.+++.+..+ |+..|++.+++.++..+++...
T Consensus       305 G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~  379 (394)
T PRK03699        305 GFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFG-LQAALLTANGLYAVVFVMCILL  379 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC-chhhhhhhHHHHHHHHHHHHHH
Confidence            44555566777777777665 557788899999999999999999999999886 9999988887776665444333

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=96.44  E-value=0.0042  Score=62.05  Aligned_cols=75  Identities=12%  Similarity=0.053  Sum_probs=60.0

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHH
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLI   76 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~   76 (285)
                      .|++.+...+...+++.+.+|+++||+++|+.++...+|..+++++.+.+.....++...|++.+++.++...+.
T Consensus       344 ~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  418 (1140)
T PRK06814        344 LAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLIVAILI  418 (1140)
T ss_pred             HHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence            467777888889999999999999999999999999999999999999987533247777766665544444333

>KOG4686|consensus

Probab=96.42  E-value=0.0057  Score=50.28  Aligned_cols=81  Identities=14%  Similarity=0.080  Sum_probs=55.4

Q ss_pred             ccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCC--chHHHHHhhHHHHHHHHHHHHhc
Q psy5252           3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGA--WPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus         3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~--wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      |+..+..-......++..+|+++.|++.|..++..|+|-++.+++++.+.++-|+  |-..|++......+..+-..+.+
T Consensus       363 GLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~  442 (459)
T KOG4686|consen  363 GLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL  442 (459)
T ss_pred             hhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence            4444433333556777888999999999999999999999999999999987543  54455544333333333444444


Q ss_pred             cCC
Q psy5252          81 EDP   83 (285)
Q Consensus        81 ~~~   83 (285)
                      .++
T Consensus       443 N~k  445 (459)
T KOG4686|consen  443 NKK  445 (459)
T ss_pred             ecc
Confidence            443

>PRK15075 citrate-proton symporter; Provisional

Probab=96.36  E-value=0.0062  Score=54.03  Aligned_cols=56  Identities=16%  Similarity=0.199  Sum_probs=42.9

Q ss_pred             ccccccccchhHHHHhhcccCCchhHHHHHHHH-HHhhHHHHHHHHHHHhhhccCCch
Q psy5252           3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYF-AIPIGSGLGYIVGSTAFSVMGAWP   59 (285)
Q Consensus         3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~-~~~iG~~~g~~l~~~l~~~~g~wr   59 (285)
                      |++.+...+....++.|.+|+++|++.+++.+. +..++..++|.+.+++.+..+ ++
T Consensus       342 ~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g-~~  398 (434)
T PRK15075        342 SFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG-DK  398 (434)
T ss_pred             HHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC-Cc
Confidence            344455556667889999999999999999644 444557789999999999875 54

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=96.35  E-value=0.018  Score=49.92  Aligned_cols=67  Identities=21%  Similarity=0.226  Sum_probs=54.9

Q ss_pred             hHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252          13 APTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus        13 ~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      ...-+++ ..||.+..+.+++....|+|..+|..++|.+.+++| ++...++.+++.++..++.....+
T Consensus       321 ~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g-~~~~~~~~a~l~~~a~~~~~~~~~  387 (394)
T COG2814         321 LQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALG-YAATGWVGAALLLLALLLALLSAR  387 (394)
T ss_pred             HHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344444 336899999999999999999999999999999986 999999999988887766655443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=96.25  E-value=0.0074  Score=52.68  Aligned_cols=79  Identities=15%  Similarity=0.132  Sum_probs=64.8

Q ss_pred             cccccchhHHHHhhcccCCchhHHHHHH-HHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccCCc
Q psy5252           6 EASYSTIAPTIISDLFVKDLRSQMLAFF-YFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDPE   84 (285)
Q Consensus         6 ~~~~~~~~~~~i~~~~~~~~rg~~~gi~-~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~~~   84 (285)
                      .+....+...++++.+|+|-.++...+. +.+..+|..+.+.++|.+.++.| .+..|++++.+.++..++..+.+++++
T Consensus       326 ~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G-~~~tylimg~iv~~~~li~~f~l~~~~  404 (412)
T PF01306_consen  326 FPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG-FQHTYLIMGLIVLPFTLISAFTLKKDK  404 (412)
T ss_dssp             HHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred             HHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC-cHHHHHHHHHHHHHHHHHheeeecCCC
Confidence            3455677889999999988888888885 68889999999999999999996 999999999998888888888887654


Q ss_pred             C
Q psy5252          85 R   85 (285)
Q Consensus        85 ~   85 (285)
                      +
T Consensus       405 ~  405 (412)
T PF01306_consen  405 K  405 (412)
T ss_dssp             S
T ss_pred             c
Confidence            4

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=96.25  E-value=0.011  Score=50.25  Aligned_cols=78  Identities=13%  Similarity=0.113  Sum_probs=63.2

Q ss_pred             CcccccccccchhHHHHhhcccC-CchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHH
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVK-DLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILF   78 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~-~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~   78 (285)
                      ++|+|.|..+|.+...+.+..+. ++-++..|+.+....+=...||.+.|++-+..|||+.+........++..+.-+.
T Consensus       305 llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~  383 (395)
T COG2807         305 LLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLR  383 (395)
T ss_pred             HHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhh
Confidence            46999999999999999988766 4556777777877777788899999999999999999988777776665544433

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=96.14  E-value=0.017  Score=50.62  Aligned_cols=67  Identities=16%  Similarity=0.228  Sum_probs=48.4

Q ss_pred             ccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHH
Q psy5252           5 GEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLI   76 (285)
Q Consensus         5 g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~   76 (285)
                      +.+...+....++.+.+|.++    .++++...++|...+.+++|.+.+.+| |+..|.+.++++++..++.
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~~G-~~~~f~~~~~~~~~~~~~~  386 (402)
T PRK11902        320 GTAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEAYG-WPGFYLMTVVIALPGLALL  386 (402)
T ss_pred             HHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHH
Confidence            344445666667777776554    455555667787777789999999996 9999999888887765454

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=96.11  E-value=0.00095  Score=58.81  Aligned_cols=106  Identities=6%  Similarity=-0.034  Sum_probs=60.9

Q ss_pred             hhhccccchhhhhHHHhHHhhhhhcccceeee--eecc-------cccc--cccc-cccccc-ccCCcchhhhhccccCC
Q psy5252         148 SHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV--ANAM-------LPSS--LAPS-LPFSSS-NSTSLPLVSSLDETAHR  214 (285)
Q Consensus       148 ~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~~~~-------~~~~--~~~~-~~~~~~-~~~~~~~~~~~~~~~p~  214 (285)
                      ...++..++.+..|++.||+|+|+.+......  ++..       .++.  +... ++...+ .......++.+.+..|+
T Consensus        46 ~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~  125 (410)
T TIGR00885        46 AFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPE  125 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCH
Confidence            33477777888999999999999866553211  1111       0111  1111 111222 22233445667777777


Q ss_pred             cch-----------hhhccccchhhhhhh--------------------------hhhhhHHHHHHHHHHHHHHHH
Q psy5252         215 SDE-----------FLAHKSDEFLAHKSD--------------------------EFLALQYALFITSFIEVLGGI  253 (285)
Q Consensus       215 ~~r-----------~l~~~~~p~~~G~~~--------------------------~~~~~~~~~~~~~~~~~~~~~  253 (285)
                      +.|           .+|..++|.+.+.+.                          +..+|+..+...+++.++..+
T Consensus       126 ~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~  201 (410)
T TIGR00885       126 STATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVAL  201 (410)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            765           156678888877663                          234688888776665554443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG3762|consensus

Probab=96.07  E-value=0.017  Score=51.61  Aligned_cols=116  Identities=10%  Similarity=-0.023  Sum_probs=74.4

Q ss_pred             hccccchhhhhHHHhHHhhhhhccccee-------eeeecccccc-c-----cccccccccccCCcchhhhhccccCCcc
Q psy5252         150 AFGDAGSPYLIGLLSEMFRHSLQLGAST-------LVANAMLPSS-L-----APSLPFSSSNSTSLPLVSSLDETAHRSD  216 (285)
Q Consensus       150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~~-------~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~p~~~  216 (285)
                      ..|-+..-++.+++.+|+|+.+.+....       +...+.-.+. +     .-+...   ........++++...||+.
T Consensus       416 ~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~---aliWaa~~sY~s~vaPp~l  492 (618)
T KOG3762|consen  416 HAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITH---ALIWAAIISYASHVAPPGL  492 (618)
T ss_pred             ccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHH---HHHHHHHHHHHHhhCCCcc
Confidence            4666666678889999999887654422       1111111111 1     111111   1112223466778899998


Q ss_pred             hh------------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy5252         217 EF------------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLLGSLYIVQDRAR  268 (285)
Q Consensus       217 r~------------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (285)
                      |.            +|-..|++++|.+.+.++-+..|.+.++.+++..+.+....+..+++.+.
T Consensus       493 ~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~~l~~~~~i  556 (618)
T KOG3762|consen  493 RATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQLLLKRRGFI  556 (618)
T ss_pred             hHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Confidence            71            56689999999999999999999988888887777777666655555443

>TIGR00806 rfc RFC reduced folate carrier

Probab=96.00  E-value=0.0013  Score=58.15  Aligned_cols=111  Identities=11%  Similarity=-0.068  Sum_probs=67.0

Q ss_pred             HHHHHHhcCCCC-cchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceee-------eeecccccc-c-cccccc
Q psy5252         125 ADMTLYVVLPLR-RSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTL-------VANAMLPSS-L-APSLPF  194 (285)
Q Consensus       125 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~-------~~~~~~~~~-~-~~~~~~  194 (285)
                      +....++++.++ .|.......     .+..+..+.+|+++||+|.|+.+....+       +.++..... + ++=+++
T Consensus        51 ~L~~elglT~~qv~G~I~s~F~-----ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~ll  125 (511)
T TIGR00806        51 YLLTVLNFTEETVTNEIIPVLP-----YSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFY  125 (511)
T ss_pred             HHHHHcCCCHHHhcchHHHHHH-----HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334467777777 676666554     6777778899999999999987665321       111111111 1 111111


Q ss_pred             cccccCCcchhhhhccccCCcchh-----------hhccccchhhhhhhhhhhhHHHH
Q psy5252         195 SSSNSTSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSDEFLALQYAL  241 (285)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~~~~~~~~~~  241 (285)
                      +.+.+.....+.++.+-+|+++|.           +|.++++.+.++ ....||+.-.
T Consensus       126 GvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~  182 (511)
T TIGR00806       126 SVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYS  182 (511)
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHH
Confidence            111122225677888999999982           667888888888 4456776433

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=95.83  E-value=0.022  Score=51.06  Aligned_cols=84  Identities=18%  Similarity=0.079  Sum_probs=70.5

Q ss_pred             cccccccccchhHHHHhhcccC--CchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC-CchHHHHHhhHHHHHHHHHHHH
Q psy5252           2 VGIGEASYSTIAPTIISDLFVK--DLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG-AWPWSLRVTPVLGACAVLLILF   78 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~--~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g-~wr~~f~i~~~~~~~~~~l~~~   78 (285)
                      .|+.-+..+...++++++..++  ++.|..+|+++....+.+++..+..+.+.+.+| +-.+.+.+.++..++..++..+
T Consensus       390 ~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~  469 (477)
T TIGR01301       390 LGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALI  469 (477)
T ss_pred             hhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHH
Confidence            5677777888889999999985  456999999999999999999998888776665 4566888889999999989888


Q ss_pred             hccCCcC
Q psy5252          79 FMEDPER   85 (285)
Q Consensus        79 ~~~~~~~   85 (285)
                      .+|+++.
T Consensus       470 ~~~~~~~  476 (477)
T TIGR01301       470 LLPRPRV  476 (477)
T ss_pred             hCCCCCC
Confidence            8887653

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=95.82  E-value=0.022  Score=49.61  Aligned_cols=69  Identities=10%  Similarity=-0.010  Sum_probs=53.4

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHH-HHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHH
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFY-FAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAV   73 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~-~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~   73 (285)
                      .|++.+...+....++.+. +++++++..++++ ....+|..+|+.++|.+.+.++ + ..|+..+++.++..
T Consensus       303 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g-~-~~~~~~~~~~~~~~  372 (382)
T PRK11128        303 HCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG-A-GVFWVMALVALPAL  372 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHH
Confidence            4666777788888888886 5667899999886 6677888999999999999886 6 46666666655443

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=95.72  E-value=0.049  Score=50.88  Aligned_cols=76  Identities=26%  Similarity=0.501  Sum_probs=62.1

Q ss_pred             cccccccccchhHHHHhhcccCC---chhHHHHHHHHHHhhHHHHHHHHHHHhhhcc---C---CchHHHHHhhHHHHHH
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKD---LRSQMLAFFYFAIPIGSGLGYIVGSTAFSVM---G---AWPWSLRVTPVLGACA   72 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~---~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~---g---~wr~~f~i~~~~~~~~   72 (285)
                      ..+|.|++-|+..+...|.++++   +|-..+.+++.+.|+|..+++.+.+++.+..   +   +|...|.+.++..++.
T Consensus        95 ia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia  174 (654)
T TIGR00926        95 IALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILA  174 (654)
T ss_pred             HHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHH
Confidence            45788899999999999999864   3778899999999999999999999987443   1   4999999988887776


Q ss_pred             HHHHH
Q psy5252          73 VLLIL   77 (285)
Q Consensus        73 ~~l~~   77 (285)
                      .++..
T Consensus       175 ~lvf~  179 (654)
T TIGR00926       175 LIVFM  179 (654)
T ss_pred             HHHHH
Confidence            65543

>KOG2504|consensus

Probab=95.71  E-value=0.004  Score=56.27  Aligned_cols=76  Identities=18%  Similarity=0.312  Sum_probs=66.0

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHH
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLIL   77 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~   77 (285)
                      .|+..|.+......++.|..+.++...+.|+......++..+||++++++.+..++|...|+..++..++...++.
T Consensus       398 fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~  473 (509)
T KOG2504|consen  398 FGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLL  473 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHH
Confidence            3566677777777899999999999999999999999999999999999999887899999999988777764443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=95.70  E-value=0.033  Score=49.37  Aligned_cols=71  Identities=13%  Similarity=0.171  Sum_probs=46.8

Q ss_pred             cchhHHHHhhcccCCchhHHHHHHHHHHhh-HHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccC
Q psy5252          10 STIAPTIISDLFVKDLRSQMLAFFYFAIPI-GSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMED   82 (285)
Q Consensus        10 ~~~~~~~i~~~~~~~~rg~~~gi~~~~~~i-G~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~   82 (285)
                      .+....+++|++|+|.|++++|+.+...++ .....|.+.+.+. ..++|...++..++..++..+.. .++++
T Consensus       354 ~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~~~-~~l~~  425 (432)
T PRK10406        354 TSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLK-SIGMETAFFWYVTLMAVVAFLVS-LMLHR  425 (432)
T ss_pred             HHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHH-HHhhh
Confidence            344567889999999999999999866553 3445777777554 34446666666655555554443 34443

>KOG3098|consensus

Probab=95.67  E-value=0.18  Score=44.86  Aligned_cols=52  Identities=15%  Similarity=0.131  Sum_probs=44.2

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhh
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAF   52 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~   52 (285)
                      +.|+|.+..+..--.++++...+|++.+..++.-.....+..+|..+--.+.
T Consensus       111 llG~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~  162 (461)
T KOG3098|consen  111 LLGFGAALLWTGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFIYF  162 (461)
T ss_pred             HhhhhHHheecccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhheeee
Confidence            4699999999999999999999999999999998888888887766654443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=95.59  E-value=0.024  Score=56.75  Aligned_cols=72  Identities=10%  Similarity=-0.046  Sum_probs=55.3

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHH
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAV   73 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~   73 (285)
                      .|++.+...+...+++.+.+|+++||+++|+.++...+|..+++.+++.+.....++...|++.+.+.++..
T Consensus       332 ~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  403 (1146)
T PRK08633        332 FGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGT  403 (1146)
T ss_pred             HHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence            467777788888999999999999999999999999999988888887775421136666666655544433

>KOG0569|consensus

Probab=95.42  E-value=0.076  Score=47.50  Aligned_cols=77  Identities=12%  Similarity=0.043  Sum_probs=66.8

Q ss_pred             ccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccCCcCcc
Q psy5252           9 YSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDPERGE   87 (285)
Q Consensus         9 ~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~~~~~~   87 (285)
                      ..|...-+.+|.+|++.|..++++.....-+...+-...-..+.+..|+  +.|++..+.+.+..+..++.+||++.+.
T Consensus       385 ~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~--~~filF~i~~~~~~i~~~~~lPETkgr~  461 (485)
T KOG0569|consen  385 PGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP--YVFILFVIPLAIFLIYLYRYLPETKGRT  461 (485)
T ss_pred             CCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHHHHHHHhCcccCCCC
Confidence            3578888999999999999999999999999998888888888888873  7788888888888889999999997543

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=95.18  E-value=0.14  Score=43.59  Aligned_cols=92  Identities=20%  Similarity=0.119  Sum_probs=55.6

Q ss_pred             ccCCchhHHHHHHH-HHHhhHHHHHHHHHHHhhhccC-CchHHHHHhhHHHHHHHHHHHHhccCCcCccccCcccccccc
Q psy5252          21 FVKDLRSQMLAFFY-FAIPIGSGLGYIVGSTAFSVMG-AWPWSLRVTPVLGACAVLLILFFMEDPERGEAEGRVTEERTS   98 (285)
Q Consensus        21 ~~~~~rg~~~gi~~-~~~~iG~~~g~~l~~~l~~~~g-~wr~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   98 (285)
                      +|++..+.-++... ..+.+-.+++.+++.++.+..+ +-..+|.....+.++..+++...-+|...+..+  +.+..++
T Consensus       155 ~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~--~~~~~~~  232 (354)
T PF05631_consen  155 FPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSS--SSSLSGS  232 (354)
T ss_pred             CChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCCccc--ccchHHH
Confidence            44444555555555 4455566777777777777654 247788888777776666655545554332111  1122345


Q ss_pred             HHHHHHHHhhhhhhHH
Q psy5252          99 FGEDIRALCKNHRETW  114 (285)
Q Consensus        99 ~~~~~~~~~~~~~~~~  114 (285)
                      .++.++.+.+||+.+.
T Consensus       233 ~~~a~~~i~~d~ril~  248 (354)
T PF05631_consen  233 FREAWRAILSDPRILL  248 (354)
T ss_pred             HHHHHHHHHcCchhHH
Confidence            6677888888888876

>KOG0254|consensus

Probab=95.17  E-value=0.0071  Score=54.96  Aligned_cols=106  Identities=11%  Similarity=0.029  Sum_probs=61.2

Q ss_pred             hccccchhhhhHHHhHHhhhhhccccee-------eeeecccccc-ccccccc-c-ccccCCcchhhhhccccCCcchh-
Q psy5252         150 AFGDAGSPYLIGLLSEMFRHSLQLGAST-------LVANAMLPSS-LAPSLPF-S-SSNSTSLPLVSSLDETAHRSDEF-  218 (285)
Q Consensus       150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~-~-~~~~~~~~~~~~~~~~~p~~~r~-  218 (285)
                      .+|..+|.++.|+++|++|||+.+....       ++.++..... +..+=++ . +.++.......+++|..|++.|. 
T Consensus        99 ~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~  178 (513)
T KOG0254|consen   99 NLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGT  178 (513)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHH
Confidence            4777788899999999999997665422       1111111111 2111111 1 11344455677899999999992 


Q ss_pred             ----------hhccccchhhhhhhhhh--hhHHHHHHHHHHHHHHHHHHH
Q psy5252         219 ----------LAHKSDEFLAHKSDEFL--ALQYALFITSFIEVLGGIFFL  256 (285)
Q Consensus       219 ----------l~~~~~p~~~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~  256 (285)
                                +|..++ .+.|...++.  +||..+....+..++-.+.++
T Consensus       179 l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~  227 (513)
T KOG0254|consen  179 LVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALGML  227 (513)
T ss_pred             HHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHHHH
Confidence                      222233 4555555443  799777776666666665533

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=95.17  E-value=0.072  Score=46.63  Aligned_cols=65  Identities=11%  Similarity=-0.024  Sum_probs=49.9

Q ss_pred             cccccccccchhHHHHhhcccCCc-hhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHH
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDL-RSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVL   68 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~-rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~   68 (285)
                      .|++.+...+...+.+.+..|+|+ +|++.++.+...++|..++..+.+.+.. +| -|..+.+.++.
T Consensus       303 ~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~  368 (393)
T PRK11195        303 IGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVK-LG-VPVVAVIVGFG  368 (393)
T ss_pred             HHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHH-cC-CCHHHHHHHHH
Confidence            467777778888888888765554 7999999999999999999999997644 54 56655554433

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=94.91  E-value=0.13  Score=41.92  Aligned_cols=80  Identities=16%  Similarity=0.117  Sum_probs=52.7

Q ss_pred             ccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccC
Q psy5252           3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMED   82 (285)
Q Consensus         3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~   82 (285)
                      |.+.+.+..++.....+.|| ++||.+.|+.-....++..+-..+...+.+.  |-..-+...+....+..+...++++.
T Consensus       107 ~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~--~~~~fll~la~~~~~v~l~~~~~vr~  183 (250)
T PF06813_consen  107 GNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD--DPSSFLLFLAVLPAVVCLVAMFFVRP  183 (250)
T ss_pred             cccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHHHHhhheec
Confidence            34455556677677778996 5899999999999999888877776666654  23333444555544444455556665


Q ss_pred             CcC
Q psy5252          83 PER   85 (285)
Q Consensus        83 ~~~   85 (285)
                      .++
T Consensus       184 ~~~  186 (250)
T PF06813_consen  184 VPP  186 (250)
T ss_pred             cCC
Confidence            443

>TIGR00896 CynX cyanate transporter

Probab=94.91  E-value=0.022  Score=48.99  Aligned_cols=59  Identities=17%  Similarity=0.173  Sum_probs=48.7

Q ss_pred             cccccccccchhHHHHhhccc-CCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchH
Q psy5252           2 VGIGEASYSTIAPTIISDLFV-KDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPW   60 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~-~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~   60 (285)
                      .|++.+...|...+.+.+..+ +++++..+++.+....+|..++|.+.+.+.++.++|.+
T Consensus       295 ~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~~  354 (355)
T TIGR00896       295 LGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWLM  354 (355)
T ss_pred             HHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            577888888888787776555 46678999999999999999999999999998876654

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR01272 gluP glucose/galactose transporter

Probab=94.47  E-value=0.058  Score=45.62  Aligned_cols=64  Identities=8%  Similarity=0.068  Sum_probs=51.5

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHH
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVL   68 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~   68 (285)
                      .|++.+..+|...+...+.+|+ +.+++.++. ....+|.++.|++.|.+.+..+ .+..|++..+.
T Consensus       240 ~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g-~~~a~~v~~~~  303 (310)
T TIGR01272       240 LGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLG-IQLAFALPVPC  303 (310)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhcc-chHHHHHHHHH
Confidence            5788889999999999998865 456777776 4566899999999999999886 88888744433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK09848 glucuronide transporter; Provisional

Probab=94.35  E-value=0.038  Score=49.24  Aligned_cols=55  Identities=16%  Similarity=0.264  Sum_probs=46.7

Q ss_pred             cccccccccchhHHHHhhcccCC-------chhHHHHHHHHHHhhHHHHHHHHHHHhhhccC
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKD-------LRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG   56 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~-------~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g   56 (285)
                      .|+|.+...+...++.+|..|.+       ++|..+|+++....+|..+|+.+.+.+.+..|
T Consensus       329 ~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G  390 (448)
T PRK09848        329 ASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSG  390 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            46788888888999999988754       35999999999999999999999999877653

>PRK09669 putative symporter YagG; Provisional

Probab=94.35  E-value=0.049  Score=48.49  Aligned_cols=55  Identities=16%  Similarity=0.169  Sum_probs=45.7

Q ss_pred             cccccccccchhHHHHhhcccC-------CchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC
Q psy5252           2 VGIGEASYSTIAPTIISDLFVK-------DLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG   56 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~-------~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g   56 (285)
                      .|++.+...+...++++|..+.       ++.|...|.++....+|..+|+.+++.+.+..|
T Consensus       329 ~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G  390 (444)
T PRK09669        329 FNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD  390 (444)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            4777888889999999998862       334667899999999999999999999988764

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=94.22  E-value=1.2  Score=39.63  Aligned_cols=58  Identities=9%  Similarity=-0.082  Sum_probs=43.9

Q ss_pred             cCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252          22 VKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus        22 ~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      +++++.+.++.+.-.-.+.-+++|++.|.+.+..+ .+....+.+...++..++-++++
T Consensus       143 ~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s-~~~~~~~i~~~N~~S~~vEy~~l  200 (432)
T PF06963_consen  143 DPGALARMNATMRRIDLFCKLLAPLFVGLLMTFAS-PVIAAIFIAGWNLASVFVEYFLL  200 (432)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677788888888888999999999999999775 88777766666666555444443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3764|consensus

Probab=94.00  E-value=0.4  Score=41.63  Aligned_cols=54  Identities=7%  Similarity=0.048  Sum_probs=39.4

Q ss_pred             ccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHH
Q psy5252          21 FVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLL   75 (285)
Q Consensus        21 ~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l   75 (285)
                      -++++-....|+...+..+-+.+..++.|.+.++.| +|.++++.-++.....++
T Consensus        99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iG-y~ipm~~Gl~vmf~sTil  152 (464)
T KOG3764|consen   99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIG-YKIPMVAGLFVMFLSTIL  152 (464)
T ss_pred             cCccccccchhHHHHHHHHHHHHhcccchhhHHHhc-cccHHHHHHHHHHHHHHH
Confidence            344555567888888888888888888888888886 999887655554444433

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=93.73  E-value=0.19  Score=41.14  Aligned_cols=70  Identities=19%  Similarity=0.383  Sum_probs=56.4

Q ss_pred             cccccccccchhHHHHhhcccC-CchhHHHHHHHH-HHhhHHHHHHHHHHHhhhc--cCCchHHHHHhhHHHHHH
Q psy5252           2 VGIGEASYSTIAPTIISDLFVK-DLRSQMLAFFYF-AIPIGSGLGYIVGSTAFSV--MGAWPWSLRVTPVLGACA   72 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~-~~rg~~~gi~~~-~~~iG~~~g~~l~~~l~~~--~g~wr~~f~i~~~~~~~~   72 (285)
                      +|++.+...+...+++.|++|+ ++|+...+.... ...+|..+++.+++.+...  . +||..|.+........
T Consensus       104 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  177 (338)
T COG0477         104 QGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLW-GWRAAFLLAALLGLLL  177 (338)
T ss_pred             HHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHH
Confidence            4778888899999999999987 689999999988 5888999998888777754  3 4999777766665443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=93.31  E-value=0.0074  Score=53.69  Aligned_cols=78  Identities=15%  Similarity=0.198  Sum_probs=61.8

Q ss_pred             ccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccCCcCcc
Q psy5252           9 YSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDPERGE   87 (285)
Q Consensus         9 ~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~~~~~~   87 (285)
                      ..+....+.+|.+|.+.|++..++......++..+++.+...+.+..+ -...|.+.+.+.++..+...+++||++.+.
T Consensus       366 ~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~-~~~~~~i~~~~~~i~~i~~~~~lpET~g~~  443 (451)
T PF00083_consen  366 WGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG-GWGVFLIFAGVCLIAIIFVYFFLPETKGKT  443 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccc-ccccchhhHHHHHHHHhheeEEEeeCCCCC
Confidence            346666888999999999999999999999999999998888877653 245666666666677777778899987643

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG2533|consensus

Probab=92.69  E-value=2.1  Score=38.78  Aligned_cols=117  Identities=13%  Similarity=-0.001  Sum_probs=64.8

Q ss_pred             CchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccCCcCccccCccccccccHHHHH
Q psy5252          24 DLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDPERGEAEGRVTEERTSFGEDI  103 (285)
Q Consensus        24 ~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (285)
                      +..+.-.+...+...+|.+++.+.++++.+.+. -.......++...+..++... .                    .++
T Consensus        77 ~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~-ls~~l~~~~~~w~~~~~~~~~-~--------------------~s~  134 (495)
T KOG2533|consen   77 KLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFP-LSKGLSVSGILWGLFGFLTAA-V--------------------HSF  134 (495)
T ss_pred             chhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHH-H--------------------hhh
Confidence            356777888888999999999999999999885 444333333332222222211 1                    111


Q ss_pred             HHHhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHh
Q psy5252         104 RALCKNHRETWIFLNLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMF  167 (285)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~  167 (285)
                      ..+.--+.+.-++-...|-........-...++++.-++...     ...-+|..++|.++-.+
T Consensus       135 ~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~-----a~~~~g~i~ggliA~g~  193 (495)
T KOG2533|consen  135 PGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWY-----ASASLGNIFGGLIAYGV  193 (495)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHH-----HhcchhhHHHHHHHHHh
Confidence            111111111113334455555445555667778888888654     33344455666666654

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=92.21  E-value=0.49  Score=38.57  Aligned_cols=149  Identities=17%  Similarity=0.186  Sum_probs=75.1

Q ss_pred             CchhHHHHHHHHHHhhHHHHHHHHHHHh---hh-ccCCchHHHHHhhHHHHHHHHHHHHhccCCcCcccc-Ccc-ccccc
Q psy5252          24 DLRSQMLAFFYFAIPIGSGLGYIVGSTA---FS-VMGAWPWSLRVTPVLGACAVLLILFFMEDPERGEAE-GRV-TEERT   97 (285)
Q Consensus        24 ~~rg~~~gi~~~~~~iG~~~g~~l~~~l---~~-~~g~wr~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~-~~~-~~~~~   97 (285)
                      ++|+....+-..+.++|.++....--.-   .+ .-.+|++.+-+.+++..+-+++..++-+|-+....+ +++ ++.+.
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~~k~~k~~~~~   81 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPKEKQEKENSTL   81 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccccccccc
Confidence            5667667777777888877765543221   11 011599999999888777665655554432111111 111 11111


Q ss_pred             cHHHHHHHHhhhhhhH-HHHHHHHHHHH--------HHHHHHhcCC---------CCcchhHHHHHHHhhhccccchhhh
Q psy5252          98 SFGEDIRALCKNHRET-WIFLNLNWSIV--------ADMTLYVVLP---------LRRSTAEAFQILISHAFGDAGSPYL  159 (285)
Q Consensus        98 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~---------~~~~~~~~~~~~~~~~~g~~~g~~~  159 (285)
                      +..+..+..+|++..| |...+..|...        ........++         +....... ...+....|..+|++.
T Consensus        82 ~~~~s~~~~LK~K~tw~w~~~Yg~wLv~~V~p~t~~~~~~~~~~s~~ni~~~~~~~~~~~~~~-~~~I~fv~g~~~G~~~  160 (267)
T PF07672_consen   82 SKKPSYKSILKEKETWKWILIYGIWLVVVVFPFTPSWFNILIWISPANIKSVVSGGGFNWIIP-IFQILFVAGYFLGPFT  160 (267)
T ss_pred             cccchHHHHHccchHHHHHHHHHHHheeEEEeccchhHhHhhhcCcccccccccccccchhhH-HHHHHHHHHHhhhcee
Confidence            2235566777777554 44444444321        1110111111         11111112 2334445777788889


Q ss_pred             hHHHhHHhhhhhcc
Q psy5252         160 IGLLSEMFRHSLQL  173 (285)
Q Consensus       160 ~G~l~d~~~~~~~~  173 (285)
                      .|..+...-+|++.
T Consensus       161 ig~~nkt~~kRk~f  174 (267)
T PF07672_consen  161 IGLWNKTNYKRKPF  174 (267)
T ss_pred             eccchhhhhhhhhH
Confidence            99888765555433

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=91.63  E-value=7.7  Score=34.20  Aligned_cols=73  Identities=16%  Similarity=0.168  Sum_probs=51.3

Q ss_pred             chhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC-CchHHHHHhhHHHHHHHHHHHHhccCCc
Q psy5252          11 TIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG-AWPWSLRVTPVLGACAVLLILFFMEDPE   84 (285)
Q Consensus        11 ~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g-~wr~~f~i~~~~~~~~~~l~~~~~~~~~   84 (285)
                      .+-.++|-..+|+++-.++.+...++.-+|..++..++..+...-+ +.+....+.-....+.. ++.+++|.++
T Consensus       112 vay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~-~~~~fLP~~~  185 (412)
T PF01770_consen  112 VAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLAL-LIALFLPMPK  185 (412)
T ss_pred             HHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-HHHHHcCCCC
Confidence            4456778888899999999999999999999999999998887322 34555454444333333 4445666544

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG2816|consensus

Probab=91.62  E-value=0.049  Score=48.62  Aligned_cols=107  Identities=13%  Similarity=0.060  Sum_probs=65.6

Q ss_pred             ccchhhhhHHHhHHhhhhhccccee---ee--eeccccccc--cccccccccccCCcchhhhhccccCCcchh-------
Q psy5252         153 DAGSPYLIGLLSEMFRHSLQLGAST---LV--ANAMLPSSL--APSLPFSSSNSTSLPLVSSLDETAHRSDEF-------  218 (285)
Q Consensus       153 ~~~g~~~~G~l~d~~~~~~~~~~~~---~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~-------  218 (285)
                      .++..+..|.++|++|||..+..-.   ++  ........+  ....+.......+....++++|....+.|.       
T Consensus        75 ~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~  154 (463)
T KOG2816|consen   75 TLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQGYWFFLLLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLS  154 (463)
T ss_pred             HHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHhhhcccccchhhhhhhhhhheeeccchhHHHHHHHHHH
Confidence            3444668999999999996443210   00  000011110  111111222344455678889999999982       


Q ss_pred             ----hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy5252         219 ----LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLLGS  259 (285)
Q Consensus       219 ----l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (285)
                          .+..++|.+.+.+.+..|+...+.+..+..+++.+......
T Consensus       155 ~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l  199 (463)
T KOG2816|consen  155 GTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFL  199 (463)
T ss_pred             HHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcc
Confidence                34479999999999998988888877777666666555443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=91.53  E-value=0.58  Score=40.70  Aligned_cols=76  Identities=22%  Similarity=0.375  Sum_probs=62.5

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhcc----C-----CchHHHHHhhHHHHH
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVM----G-----AWPWSLRVTPVLGAC   71 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~----g-----~wr~~f~i~~~~~~~   71 (285)
                      +.|++.|.+.....+.+-|..++++.|..+|.+.....++..++..+++.+.+..    +     +|-..|.+.++..++
T Consensus       310 l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~  389 (403)
T PF03209_consen  310 LLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLA  389 (403)
T ss_pred             HHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHH
Confidence            3689999999999999999999999999999999999999999999999887642    1     255667777776655


Q ss_pred             HHHHH
Q psy5252          72 AVLLI   76 (285)
Q Consensus        72 ~~~l~   76 (285)
                      ..++.
T Consensus       390 a~~ll  394 (403)
T PF03209_consen  390 ALVLL  394 (403)
T ss_pred             HHHHH
Confidence            55443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG0252|consensus

Probab=90.89  E-value=0.32  Score=43.02  Aligned_cols=70  Identities=10%  Similarity=0.031  Sum_probs=59.0

Q ss_pred             HHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh-----ccCCchHHHHHhhHHHHHHHHHHHHhccCCcCc
Q psy5252          15 TIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS-----VMGAWPWSLRVTPVLGACAVLLILFFMEDPERG   86 (285)
Q Consensus        15 ~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~-----~~g~wr~~f~i~~~~~~~~~~l~~~~~~~~~~~   86 (285)
                      .+-+|.||.+-|+..-|+.....-.|.++|...-..+.+     ..+ .|+.|++.+.+.++.. +..+++||++.+
T Consensus       429 ivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g-~~~v~~i~~~~~~~gi-~~T~l~pEtk~~  503 (538)
T KOG0252|consen  429 IVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIG-VRNVFIILAGCMLLGI-LFTLLIPETKGK  503 (538)
T ss_pred             EeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCcccc-chHHHHHHHHHHHHhH-heeEEeeccccc
Confidence            456899999999999999999999999999999999988     554 8999999998887765 555677787654

>PRK10429 melibiose:sodium symporter; Provisional

Probab=89.93  E-value=0.31  Score=43.86  Aligned_cols=55  Identities=15%  Similarity=0.213  Sum_probs=44.5

Q ss_pred             cccccccccchhHHHHhhccc-------CCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC
Q psy5252           2 VGIGEASYSTIAPTIISDLFV-------KDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG   56 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~-------~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g   56 (285)
                      .|++.+...+...++++|..+       +++.|..+|......-+|..+++.+.+++.+..|
T Consensus       334 ~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G  395 (473)
T PRK10429        334 LNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG  395 (473)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            456777778888889999865       3445668999999999999999999999887654

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=89.88  E-value=1.9  Score=38.42  Aligned_cols=70  Identities=14%  Similarity=0.214  Sum_probs=51.5

Q ss_pred             hhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC-------CchHHHHHhhHHHHHHHHHHHHhccC
Q psy5252          12 IAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG-------AWPWSLRVTPVLGACAVLLILFFMED   82 (285)
Q Consensus        12 ~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g-------~wr~~f~i~~~~~~~~~~l~~~~~~~   82 (285)
                      +...++++..|+..-|...++..+..|+|..++..++..+.+.++       +-.+..++..+..++.. .+..++|+
T Consensus       338 P~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l-~ll~lLp~  414 (433)
T PF03092_consen  338 PSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPL-PLLFLLPP  414 (433)
T ss_pred             HHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHH-HHHHHcCC
Confidence            345678999999999999999999999999999999999988764       12234455555554433 44445554

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK10133 L-fucose transporter; Provisional

Probab=89.30  E-value=0.57  Score=41.70  Aligned_cols=70  Identities=11%  Similarity=-0.061  Sum_probs=53.9

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHH
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAV   73 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~   73 (285)
                      .|++.+..+|...+...+.+|+ +.+.+.++..+ ..+|..+++++.+.+.+..|+-|..|++..+..+...
T Consensus       357 ~glg~~~i~P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~  426 (438)
T PRK10133        357 CSAFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF  426 (438)
T ss_pred             HHHHHHHHHHHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            5788999999999999999865 56778888865 4478888999999999877436788876665544443

>PF12832 MFS_1_like: MFS_1 like family

Probab=89.18  E-value=0.25  Score=32.25  Aligned_cols=40  Identities=18%  Similarity=0.164  Sum_probs=28.1

Q ss_pred             HHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcc
Q psy5252         129 LYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQL  173 (285)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~  173 (285)
                      +.+.++.+.|...+...     +...+++++.|.++||.++++..
T Consensus        29 ~~Gl~~~~iGil~~i~~-----~~~~~~~pl~g~laDk~~~~~~~   68 (77)
T PF12832_consen   29 QLGLSPSQIGILSAIRP-----LIRFLAPPLWGFLADKFGKRKVI   68 (77)
T ss_pred             hcCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHCccHHH
Confidence            35566666666555443     44566788999999999998754

>KOG2325|consensus

Probab=89.17  E-value=0.27  Score=43.93  Aligned_cols=79  Identities=20%  Similarity=0.187  Sum_probs=64.2

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      .|++.........++-++...|++++.+.++++.+.+++..++|++.......+| .|+...+..+..++...++..+.+
T Consensus       398 ~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g-~~~v~~~~~~~~l~~~~l~~~~~~  476 (488)
T KOG2325|consen  398 FGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSG-PRPVWIILLCLLLVVAALWIVFLK  476 (488)
T ss_pred             eccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcC-ccHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555666667788999999999999999999999999999999999999999886 888877776665555555555444

>PTZ00207 hypothetical protein; Provisional

Probab=88.30  E-value=22  Score=33.17  Aligned_cols=51  Identities=10%  Similarity=0.010  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhccccc-hhhhhHHHhHHhhhh
Q psy5252         118 NLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAG-SPYLIGLLSEMFRHS  170 (285)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-g~~~~G~l~d~~~~~  170 (285)
                      ...|..........+. ++.|.-+... .+.+.+|..+ ...+.|.+-|+-.+|
T Consensus       467 G~~~~~~~~i~selFg-k~~g~~yN~~-~~a~pigs~~~n~~l~G~~Yd~ea~k  518 (591)
T PTZ00207        467 GFMAATIALVTRTIFA-KDPAKHYNFC-FLGSVLSAIFLNRLLYGEWYTQQADK  518 (591)
T ss_pred             hHhHHHHHHHHHHHhc-cchHHHhhHH-hHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3455555444444444 5556555533 2233344333 256788888887766

>KOG0253|consensus

Probab=88.12  E-value=0.32  Score=41.94  Aligned_cols=75  Identities=12%  Similarity=0.099  Sum_probs=57.8

Q ss_pred             ccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccCCc
Q psy5252           7 ASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDPE   84 (285)
Q Consensus         7 ~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~~~   84 (285)
                      ++.+-+++.|-.|.+|.+-|+...|.-.+..-+|.++.|+++ ...+.  +-..+..+.+.+.++..++..++.-|++
T Consensus       449 sg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~--s~sl~i~vy~~~~ilagIavcffPiEtk  523 (528)
T KOG0253|consen  449 SGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAEL--STSLPIFVYGALFILAGIAVCFFPIETK  523 (528)
T ss_pred             hchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhcc--ceeehHHHHHHHHHHHHHHheeeeeccC
Confidence            445667788999999999999999999999999999999999 33332  2345566677777777777766655654

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=86.87  E-value=0.23  Score=46.52  Aligned_cols=62  Identities=10%  Similarity=0.023  Sum_probs=42.5

Q ss_pred             CCcchhhhhccccCCcch--------------hhhccccchhhhhhhhhh-------hhHHHHHHHHHHHHHHHHHHHHH
Q psy5252         200 TSLPLVSSLDETAHRSDE--------------FLAHKSDEFLAHKSDEFL-------ALQYALFITSFIEVLGGIFFLLG  258 (285)
Q Consensus       200 ~~~~~~~~~~~~~p~~~r--------------~l~~~~~p~~~G~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~  258 (285)
                      .-+...+...|.++++++              .+|..+++.+.+++.+..       +|..+|.+.+++++++.+++...
T Consensus       102 iKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g  181 (654)
T TIGR00926       102 IKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAG  181 (654)
T ss_pred             cccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHh
Confidence            334456777787776432              156677888888876443       58899998888888888877665


Q ss_pred             hhH
Q psy5252         259 SLY  261 (285)
Q Consensus       259 ~~~  261 (285)
                      .+.
T Consensus       182 ~k~  184 (654)
T TIGR00926       182 SKM  184 (654)
T ss_pred             ccc
Confidence            443

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=86.57  E-value=0.92  Score=34.11  Aligned_cols=52  Identities=15%  Similarity=0.177  Sum_probs=45.0

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhh
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAF   52 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~   52 (285)
                      +.|++.+..+++.-.++.+..++++|++..+++......+.++|.++.-.+.
T Consensus        98 l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen   98 LLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             HHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999998888888888877665554

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG3810|consensus

Probab=86.16  E-value=8.9  Score=33.05  Aligned_cols=73  Identities=12%  Similarity=0.202  Sum_probs=51.1

Q ss_pred             hhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHH-HHHhhHHHHHHHHHHHHhccCCcC
Q psy5252          12 IAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWS-LRVTPVLGACAVLLILFFMEDPER   85 (285)
Q Consensus        12 ~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~-f~i~~~~~~~~~~l~~~~~~~~~~   85 (285)
                      +-.++|-.-++|+++.++.|...+..-.|...|..++..+..... +... .-...+......+++..++|.++|
T Consensus       114 AYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~-~sy~~LN~ISL~~~~ia~~~A~fLP~v~r  187 (433)
T KOG3810|consen  114 AYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLET-LSYTTLNYISLAEVTIAVLLALFLPRVKR  187 (433)
T ss_pred             hhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcc-cchhhhchhhHHHHHHHHHHHhhCCCCch
Confidence            345677778899999999999999999999999999999887532 3222 122333344444555667776653

>PF13347 MFS_2: MFS/sugar transport protein

Probab=86.14  E-value=2.2  Score=37.77  Aligned_cols=56  Identities=21%  Similarity=0.367  Sum_probs=48.2

Q ss_pred             CcccccccccchhHHHHhhcccC-------CchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVK-------DLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG   56 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~-------~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g   56 (285)
                      +.|++.+..++...++++|..+.       ++.|..+|+++....+|..++..+.+.+.+..|
T Consensus       324 l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G  386 (428)
T PF13347_consen  324 LAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG  386 (428)
T ss_pred             HhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence            35888999999999999998873       446899999999999999999999999887654

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=83.90  E-value=0.28  Score=43.67  Aligned_cols=53  Identities=9%  Similarity=0.045  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccc
Q psy5252         118 NLNWSIVADMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGA  175 (285)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~  175 (285)
                      ...|...++....++++...|....    +..++ ..+.-++.|.++||..+|.-+++
T Consensus        31 ~~~yLl~fYTdv~Gis~~~aG~ifl----v~Rii-DAi~DP~~G~i~D~t~~r~GrfR   83 (467)
T COG2211          31 VVLYLLFFYTDVFGLSAALAGTIFL----VARII-DAITDPIMGFIVDRTRSRWGRFR   83 (467)
T ss_pred             HHHHHHHHHhcccCCcHHHHHHHHH----HHHHH-HHHhcchheeeeccccccccccc
Confidence            3445555555566666554443333    22333 44557799999998887665555

>PRK11462 putative transporter; Provisional

Probab=80.56  E-value=2  Score=38.56  Aligned_cols=53  Identities=19%  Similarity=0.154  Sum_probs=38.9

Q ss_pred             ccccccccchhHHHHhhccc-------CCchhHHHHHHHHHHhhHHHHHHHHHHHhhhcc
Q psy5252           3 GIGEASYSTIAPTIISDLFV-------KDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVM   55 (285)
Q Consensus         3 G~g~~~~~~~~~~~i~~~~~-------~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~   55 (285)
                      |++.+...+...++++|..+       +++.|..++.......+|..+++.+++.+.+..
T Consensus       329 g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~  388 (460)
T PRK11462        329 GVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYG  388 (460)
T ss_pred             HHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            44555556666778887766       334456668878889999999999999988754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	285
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.85
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.79
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.7
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.62
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.5
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.49
2xut_A	524	Proton/peptide symporter family protein; transport	99.28
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.08
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	97.91
2cfq_A	417	Lactose permease; transport, transport mechanism,	97.82
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	97.76
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	97.62
2xut_A	524	Proton/peptide symporter family protein; transport	97.61
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.31

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.85  E-value=2.9e-22  Score=175.94  Aligned_cols=258  Identities=10%  Similarity=0.107  Sum_probs=163.8

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      ++|++.+...+...++++|++|+|+|++++++.+.+.++|.++++.+++.+.+..++||+.|++.+++.++..++..+++
T Consensus       128 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~  207 (451)
T 1pw4_A          128 LCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMM  207 (451)
T ss_dssp             HHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhc
Confidence            36888999999999999999999999999999999999999999999999888763399999999988888777777778


Q ss_pred             cCCcCccccCccc---c-----------ccccHHHH-HHHHhhhhhhHHHHHH--HH----HHHHHHHHHHhcCCCCcch
Q psy5252          81 EDPERGEAEGRVT---E-----------ERTSFGED-IRALCKNHRETWIFLN--LN----WSIVADMTLYVVLPLRRST  139 (285)
Q Consensus        81 ~~~~~~~~~~~~~---~-----------~~~~~~~~-~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~  139 (285)
                      ||++++....+.+   +           ++.+.++. .+..+++|.++.....  ..    .........+..+....+.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  287 (451)
T 1pw4_A          208 RDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFAL  287 (451)
T ss_dssp             CCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCH
T ss_pred             cCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence            8765432211100   0           01111221 4566777776652211  11    1111111122222112222


Q ss_pred             hHHHHHHHhhhccccchhhhhHHHhHHh--hhhhcccceeee---eec---cc-c--cc-c-ccc-cccccc-ccCCcch
Q psy5252         140 AEAFQILISHAFGDAGSPYLIGLLSEMF--RHSLQLGASTLV---ANA---ML-P--SS-L-APS-LPFSSS-NSTSLPL  204 (285)
Q Consensus       140 ~~~~~~~~~~~~g~~~g~~~~G~l~d~~--~~~~~~~~~~~~---~~~---~~-~--~~-~-~~~-~~~~~~-~~~~~~~  204 (285)
                      ...........++.+++.++.|+++||+  ++|+........   ++.   .. +  .. . ... .....+ .......
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  367 (451)
T 1pw4_A          288 DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLI  367 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHH
Confidence            2222223333466777888999999999  877654432211   111   11 1  11 1 111 111111 2223334


Q ss_pred             hhhhccccCCcch-----------hh-hccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy5252         205 VSSLDETAHRSDE-----------FL-AHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLLG  258 (285)
Q Consensus       205 ~~~~~~~~p~~~r-----------~l-~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (285)
                      .+.+.|.+|++.|           .+ +..++|.+.|.+.|+.|++..+++.+++.+++.++....
T Consensus       368 ~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          368 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            5788899999987           16 788999999999999999999988888777777666543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.79  E-value=4.4e-20  Score=161.46  Aligned_cols=242  Identities=12%  Similarity=0.020  Sum_probs=154.4

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhh-hccCC----------------------
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAF-SVMGA----------------------   57 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~-~~~g~----------------------   57 (285)
                      ++|++.+...+...++++|++|+|+|++++++.+.+.++|..+++.+++.+. +..++                      
T Consensus       126 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (438)
T 3o7q_A          126 IIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLV  205 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhh
Confidence            3688999999999999999999999999999999999999999999999998 55444                      


Q ss_pred             --chHHHHHhhHHHHHHHHHHHHhccCCcCccccCccccccccHHHHHHHHhhhhhhHHHHH-----------HHHHHHH
Q psy5252          58 --WPWSLRVTPVLGACAVLLILFFMEDPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL-----------NLNWSIV  124 (285)
Q Consensus        58 --wr~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~  124 (285)
                        ||+.|++.+++.++..++.. +.++++.++.+ ++++++.+.++.++..+++|.++....           ...|.+.
T Consensus       206 ~~w~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (438)
T 3o7q_A          206 LSVQTPYMIIVAIVLLVALLIM-LTKFPALQSDN-HSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIR  283 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-HCCCCCCTTTC-CCCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHH-HHcCCcccccc-cccccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              99999888877666654443 33332222111 112233345567788888888766211           2233444


Q ss_pred             H-HHHHHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeeee--e---ccc-ccc--cccccccc
Q psy5252         125 A-DMTLYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLVA--N---AML-PSS--LAPSLPFS  195 (285)
Q Consensus       125 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~~--~---~~~-~~~--~~~~~~~~  195 (285)
                      + ....++.++...+.....     ..++.+++.++.|+++||+++|+......+..  .   ... +..  +....+..
T Consensus       284 ~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  358 (438)
T 3o7q_A          284 YAVEEIPGMTAGFAANYLTG-----TMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCS  358 (438)
T ss_dssp             HHHHHSTTCCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             HhhhccCCcchhHHHHHHHH-----HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            4 222224443333333332     23566677889999999999997655422110  0   111 111  11111111


Q ss_pred             ccc-cCCcchhhhhccccCCcch---------hhhccccchhhhhhhhhhh-hHHHHHHHHHHHH
Q psy5252         196 SSN-STSLPLVSSLDETAHRSDE---------FLAHKSDEFLAHKSDEFLA-LQYALFITSFIEV  249 (285)
Q Consensus       196 ~~~-~~~~~~~~~~~~~~p~~~r---------~l~~~~~p~~~G~~~~~~~-~~~~~~~~~~~~~  249 (285)
                      .+. ...+...+...|.+|++.+         .++..++|.+.|.+.|+.| ++..+++..++.+
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~  423 (438)
T 3o7q_A          359 AFMSIQYPTIFSLGIKNLGQDTKYGSSFIVMTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFA  423 (438)
T ss_dssp             HHHTTHHHHHHHHHHSSCGGGHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            222 2333346666888887743         2667899999999999998 9888876544433

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.70  E-value=3.2e-17  Score=145.56  Aligned_cols=80  Identities=16%  Similarity=0.260  Sum_probs=68.6

Q ss_pred             CcccccccccchhHHHHhhcccCCc--hhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHH
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDL--RSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILF   78 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~--rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~   78 (285)
                      ++|++.+...+...++++|++|+++  |++++++++.+.++|..++|.+++.+.+..+ ||+.|++.++..++..++..+
T Consensus       117 l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~  195 (491)
T 4aps_A          117 LIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG-YHVAFSLAAIGMFIGLLVYYF  195 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHH
Confidence            3688899999999999999999998  7888999999999999999999999999886 999999988777666555544


Q ss_pred             hcc
Q psy5252          79 FME   81 (285)
Q Consensus        79 ~~~   81 (285)
                      ..+
T Consensus       196 ~~~  198 (491)
T 4aps_A          196 GGK  198 (491)
T ss_dssp             HHH
T ss_pred             hCc
Confidence            433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.62  E-value=6.3e-18  Score=145.00  Aligned_cols=230  Identities=14%  Similarity=0.055  Sum_probs=143.1

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      +|++.+...+...+++.|++|+|+|++++++.+.+.++|..+++.+++.+.+..+ ||+.|++.+++.++..++..+.+|
T Consensus        98 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  176 (375)
T 2gfp_A           98 QGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-WRACYLFLLVLCAGVTFSMARWMP  176 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-HHHHHHHHHHHHHHHHCCCCCSSC
T ss_pred             HHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHCc
Confidence            5788889999999999999999999999999999999999999999999998886 999999988887776654555667


Q ss_pred             CCcCccccCccccccccHHHHHHHHhhhhhhHHHHH--HHHHHH---------HHHHHHHhcCCCCcchhHHHHHHHhhh
Q psy5252          82 DPERGEAEGRVTEERTSFGEDIRALCKNHRETWIFL--NLNWSI---------VADMTLYVVLPLRRSTAEAFQILISHA  150 (285)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (285)
                      |+++++++++  +.    ++.++..+++|.++....  ...+..         .+....++.++...+     .......
T Consensus       177 ~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-----~~~~~~~  245 (375)
T 2gfp_A          177 ETRPVDAPRT--RL----LTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVS-----ILFILPI  245 (375)
T ss_dssp             CCSTTTCCCC--CT----TTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHH-----HHHHTHH
T ss_pred             ccCCCCcccc--cH----HHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-----HHHHHHH
Confidence            6554322211  11    122344556666554221  111111         111111233222222     2223334


Q ss_pred             ccccchhhhhHHHhHHhhhhhccccee-eeeec-----cc--c-cc--c-ccccccccc-ccCCcchhhhhccccCCcch
Q psy5252         151 FGDAGSPYLIGLLSEMFRHSLQLGAST-LVANA-----ML--P-SS--L-APSLPFSSS-NSTSLPLVSSLDETAHRSDE  217 (285)
Q Consensus       151 ~g~~~g~~~~G~l~d~~~~~~~~~~~~-~~~~~-----~~--~-~~--~-~~~~~~~~~-~~~~~~~~~~~~~~~p~~~r  217 (285)
                      ++.+++.++.+++.||.+++....... ...+.     ..  . +.  . ....+...+ ........+...|..| ++|
T Consensus       246 ~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~  324 (375)
T 2gfp_A          246 PAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLA  324 (375)
T ss_dssp             HHHHHHHHHHHTTTTHHHHHHHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-ccc
Confidence            666777889999999988732211111 11111     11  0 11  1 111111122 2344556778889988 666


Q ss_pred             -----------hhhccccchhhhhhhhhhhhHHHHHHH
Q psy5252         218 -----------FLAHKSDEFLAHKSDEFLALQYALFIT  244 (285)
Q Consensus       218 -----------~l~~~~~p~~~G~~~~~~~~~~~~~~~  244 (285)
                                 .++..++|.+.|.+.|..+++..+...
T Consensus       325 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~  362 (375)
T 2gfp_A          325 GTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMT  362 (375)
T ss_dssp             HHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence                       166789999999999888887777653

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.50  E-value=1.9e-14  Score=127.57  Aligned_cols=84  Identities=23%  Similarity=0.373  Sum_probs=68.4

Q ss_pred             CcccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC-------CchHHHHHhhHHHHHHH
Q psy5252           1 MVGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG-------AWPWSLRVTPVLGACAV   73 (285)
Q Consensus         1 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g-------~wr~~f~i~~~~~~~~~   73 (285)
                      ++|+|.|...+.+..+++|+.|+++|++..++.+.+..+|..+++.++..+....+       +||..+.+..+..++..
T Consensus       135 l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (491)
T 4gc0_A          135 IGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFL  214 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhh
Confidence            36899999999999999999999999999999999999999999999887765321       37777776666665544


Q ss_pred             HHHHHhccCCcC
Q psy5252          74 LLILFFMEDPER   85 (285)
Q Consensus        74 ~l~~~~~~~~~~   85 (285)
                       +..++.||+|+
T Consensus       215 -~~~~~~peSp~  225 (491)
T 4gc0_A          215 -MLLYTVPESPR  225 (491)
T ss_dssp             -HHGGGSCCCHH
T ss_pred             -hhhhcCCCChH
Confidence             55567788765

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.49  E-value=1.9e-15  Score=131.70  Aligned_cols=247  Identities=9%  Similarity=-0.045  Sum_probs=135.0

Q ss_pred             ccccccchhHHHHhhcccC--CchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccC
Q psy5252           5 GEASYSTIAPTIISDLFVK--DLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMED   82 (285)
Q Consensus         5 g~~~~~~~~~~~i~~~~~~--~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~   82 (285)
                      +.+..++.....+.++.++  ++++..++......++|..++|.+++++.+ .+ ||+.|++.++..++..++..+..||
T Consensus       113 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~-~~~~f~~~~~~~~~~~~~~~~~~~~  190 (417)
T 2cfq_A          113 YLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-IN-NQFVFWLGSGCALILAVLLFFAKTD  190 (417)
T ss_dssp             STTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HC-SHHHHTTTTTTTTTHHHHSCSSCCC
T ss_pred             HHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hc-hhHHHHHHHHHHHHHHHHHHHcCcc
Confidence            3344444445555555543  356777888888899999999999999987 44 9999998877655444333222334


Q ss_pred             CcCccc-cC-ccccccccHHHHHHHHhhhhhhHHHHHH-----------HHHHHHHHHHHHhcCCCCcc-hhHHHHHHHh
Q psy5252          83 PERGEA-EG-RVTEERTSFGEDIRALCKNHRETWIFLN-----------LNWSIVADMTLYVVLPLRRS-TAEAFQILIS  148 (285)
Q Consensus        83 ~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  148 (285)
                      ++++.+ ++ +++++++...+.++..+++|.++.....           ..|.+.+...  ..+....+ ...+.. ...
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~-~~~  267 (417)
T 2cfq_A          191 APSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTS--FFATGEQGTRVFGYV-TTM  267 (417)
T ss_dssp             CSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TSSSHHHHTHHHHHH-HHH
T ss_pred             cccccccccccccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhccCCChhHHHHH-HHH
Confidence            322111 11 0111111122345667777776542211           1122222211  11111111 111222 222


Q ss_pred             hhccccchhhhhHHHhHHhhhhhcccceeee--e---eccc-ccc--cccc-cccccc-ccCCcchhhhhccccCCcchh
Q psy5252         149 HAFGDAGSPYLIGLLSEMFRHSLQLGASTLV--A---NAML-PSS--LAPS-LPFSSS-NSTSLPLVSSLDETAHRSDEF  218 (285)
Q Consensus       149 ~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~--~---~~~~-~~~--~~~~-~~~~~~-~~~~~~~~~~~~~~~p~~~r~  218 (285)
                      ..++.+++.++.|+++||+++|+........  +   .... ++.  +... .+.... .....+....+.|.+|++.|.
T Consensus       268 ~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g  347 (417)
T 2cfq_A          268 GELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSA  347 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            2344556678999999999999765542211  1   1111 111  1111 111111 112223456788999999881


Q ss_pred             ------------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5252         219 ------------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFL  256 (285)
Q Consensus       219 ------------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (285)
                                  +++.++|.+.|.+.|+.|++..|.+.+++.+++.++..
T Consensus       348 ~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~  397 (417)
T 2cfq_A          348 TIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISV  397 (417)
T ss_dssp             HHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence                        45579999999999988988888877777777666543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.28  E-value=1.2e-12  Score=116.92  Aligned_cols=74  Identities=19%  Similarity=0.310  Sum_probs=64.7

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHH---HHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHH
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAF---FYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLI   76 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi---~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~   76 (285)
                      +|++.+...+...++++|++|+++|+++.+.   ++.+.++|..++|.+++.+.+..+ ||+.|++.+++.++..++.
T Consensus       119 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~  195 (524)
T 2xut_A          119 IALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG-AAVAFGIPGVLMFVATVFF  195 (524)
T ss_dssp             HHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHHH
Confidence            5888899999999999999999999877666   999999999999999999998886 9999999888776655444

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.08  E-value=2.6e-06  Score=74.05  Aligned_cols=78  Identities=17%  Similarity=0.103  Sum_probs=66.7

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhh-HHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPI-GSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~i-G~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      .|++.+...+...+++.|.+|+++|++++|+++....+ |..+++.+.+.+.+..+ |+..|++.+++.++..++..+..
T Consensus       356 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          356 IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566677777889999999999999999999999999 99999999999999886 99999998888777765554443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=97.91  E-value=6.5e-07  Score=77.64  Aligned_cols=122  Identities=9%  Similarity=0.033  Sum_probs=73.0

Q ss_pred             HHhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceeee-----eec---cc-ccc--cccc-ccccc
Q psy5252         129 LYVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTLV-----ANA---ML-PSS--LAPS-LPFSS  196 (285)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~-----~~~---~~-~~~--~~~~-~~~~~  196 (285)
                      .++.+..+.+...+..     .++..++.++.|+++||+|||+......+.     +..   .. ++.  +.+. .+...
T Consensus        55 ~~g~s~~~~g~~~~~~-----~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~  129 (438)
T 3o7q_A           55 AFTLTNFQAGLIQSAF-----YFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAA  129 (438)
T ss_dssp             HSCCCSHHHHHHHHHH-----HHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHH-----HHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHh
Confidence            3455554444444433     366677788999999999999876653211     111   11 111  1111 11111


Q ss_pred             c-ccCCcchhhhhccccCCcchh-----------hhccccchhhhhhh-hhhh-------------------------hH
Q psy5252         197 S-NSTSLPLVSSLDETAHRSDEF-----------LAHKSDEFLAHKSD-EFLA-------------------------LQ  238 (285)
Q Consensus       197 ~-~~~~~~~~~~~~~~~p~~~r~-----------l~~~~~p~~~G~~~-~~~~-------------------------~~  238 (285)
                      + ........+++.|.+|+++|.           +|..++|.+.+.+. +..+                         |+
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  209 (438)
T 3o7q_A          130 GLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQ  209 (438)
T ss_dssp             HHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             hHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHH
Confidence            2 233344578899999999982           56689999999887 5544                         88


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy5252         239 YALFITSFIEVLGGIFF  255 (285)
Q Consensus       239 ~~~~~~~~~~~~~~~~~  255 (285)
                      +.++..++...+..+++
T Consensus       210 ~~~~~~~~~~~~~~~~~  226 (438)
T 3o7q_A          210 TPYMIIVAIVLLVALLI  226 (438)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88876665555544443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=97.82  E-value=7.9e-06  Score=70.67  Aligned_cols=81  Identities=11%  Similarity=0.154  Sum_probs=64.7

Q ss_pred             cccccccchhHHHHhhcccCCchhHHHHH-HHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccC
Q psy5252           4 IGEASYSTIAPTIISDLFVKDLRSQMLAF-FYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMED   82 (285)
Q Consensus         4 ~g~~~~~~~~~~~i~~~~~~~~rg~~~gi-~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~   82 (285)
                      ++.+...+....+++|.+|++.|+++.++ ++....+|..++|.+++.+.+..+ ++..|.+.+++.++..++.....||
T Consensus       324 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~~  402 (417)
T 2cfq_A          324 FEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            33344455667899999999999999999 588889999999999999998775 9999998888877776665555665


Q ss_pred             CcC
Q psy5252          83 PER   85 (285)
Q Consensus        83 ~~~   85 (285)
                      +++
T Consensus       403 ~~~  405 (417)
T 2cfq_A          403 PGP  405 (417)
T ss_dssp             SCT
T ss_pred             CCc
Confidence            443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=97.76  E-value=1.5e-05  Score=70.16  Aligned_cols=81  Identities=16%  Similarity=0.206  Sum_probs=65.5

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      .|++.+...+...+++.|.+|+++|++++|+.+....+|..+++.+.+.+.+. + +.+.|.+.+++.++..++..+..+
T Consensus       396 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~  473 (491)
T 4aps_A          396 VILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-S-EVAYFSYFGLGSVVLGIVLVFLSK  473 (491)
T ss_dssp             HHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-S-TTHHHHHTHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46777788899999999999999999999999999999999999999988774 3 778888888887777766666555


Q ss_pred             CCc
Q psy5252          82 DPE   84 (285)
Q Consensus        82 ~~~   84 (285)
                      +.+
T Consensus       474 ~~~  476 (491)
T 4aps_A          474 RIQ  476 (491)
T ss_dssp             ---
T ss_pred             HHH
Confidence            543

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=97.62  E-value=0.00011  Score=64.64  Aligned_cols=78  Identities=14%  Similarity=0.149  Sum_probs=64.5

Q ss_pred             ccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhh------ccCCchHHHHHhhHHHHHHHHHHHHhccC
Q psy5252           9 YSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFS------VMGAWPWSLRVTPVLGACAVLLILFFMED   82 (285)
Q Consensus         9 ~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~------~~g~wr~~f~i~~~~~~~~~~l~~~~~~~   82 (285)
                      ..|....+.+|.+|.+.|++++|+.+....++..+++.+.+.+.+      ..+ +...|++.++++++..+..++++||
T Consensus       387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~-~~~~~~i~~~~~~~~~i~~~~~~PE  465 (491)
T 4gc0_A          387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFH-NGFSYWIYGCMGVLAALFMWKFVPE  465 (491)
T ss_dssp             TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHheecC
Confidence            346677899999999999999999999999999998888766643      233 6678888898888888888899999


Q ss_pred             CcCcc
Q psy5252          83 PERGE   87 (285)
Q Consensus        83 ~~~~~   87 (285)
                      ++.+.
T Consensus       466 Tkg~t  470 (491)
T 4gc0_A          466 TKGKT  470 (491)
T ss_dssp             CTTCC
T ss_pred             CCCCC
Confidence            87654

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.61  E-value=1.7e-05  Score=70.52  Aligned_cols=82  Identities=10%  Similarity=0.160  Sum_probs=60.3

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccC-Cc---------hHHHHHhhHHHHH
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMG-AW---------PWSLRVTPVLGAC   71 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g-~w---------r~~f~i~~~~~~~   71 (285)
                      .|++.+...+...+++.|.+|+++|++++|++++...+|..+++.+.+.+.+..+ +|         +..|++.+.+.++
T Consensus       415 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (524)
T 2xut_A          415 LTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAIL  494 (524)
T ss_dssp             HHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHH
Confidence            4667777888899999999999999999999999999999999999999886321 13         3347777776666


Q ss_pred             HHHHHHHhccCC
Q psy5252          72 AVLLILFFMEDP   83 (285)
Q Consensus        72 ~~~l~~~~~~~~   83 (285)
                      ..++..++.++.
T Consensus       495 ~~~~~~~~~~~~  506 (524)
T 2xut_A          495 AAIVFALYARSY  506 (524)
T ss_dssp             HHHHHC------
T ss_pred             HHHHHHHHHHHh
Confidence            665554444443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.31  E-value=2.8e-05  Score=65.93  Aligned_cols=104  Identities=8%  Similarity=-0.045  Sum_probs=66.1

Q ss_pred             hccccchhhhhHHHhHHhhhhhcccceeeeee--c---cc-ccc--ccc-ccccccccc-CCcchhhhhccccCCcchh-
Q psy5252         150 AFGDAGSPYLIGLLSEMFRHSLQLGASTLVAN--A---ML-PSS--LAP-SLPFSSSNS-TSLPLVSSLDETAHRSDEF-  218 (285)
Q Consensus       150 ~~g~~~g~~~~G~l~d~~~~~~~~~~~~~~~~--~---~~-~~~--~~~-~~~~~~~~~-~~~~~~~~~~~~~p~~~r~-  218 (285)
                      .++..++.++.|+++||+|||+..........  .   .. ++.  +.. ..+...+.+ ......+.+.|.+|+++|. 
T Consensus        45 ~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~  124 (375)
T 2gfp_A           45 LLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRH  124 (375)
T ss_dssp             HHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCS
T ss_pred             HHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHH
Confidence            36666778899999999999976654221110  0   11 111  111 111111222 3334567888999988871 


Q ss_pred             ----------hhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy5252         219 ----------LAHKSDEFLAHKSDEFLALQYALFITSFIEVLGGI  253 (285)
Q Consensus       219 ----------l~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~  253 (285)
                                ++..++|.+.|.+.+..+|+..+.+.++..++..+
T Consensus       125 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  169 (375)
T 2gfp_A          125 ANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF  169 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence                      56689999999999999999999877666555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	285
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.83
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.41
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.39
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.03

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=4e-21  Score=165.95  Aligned_cols=258  Identities=10%  Similarity=0.063  Sum_probs=162.1

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      +|++.+...+...++++|++|+++|++++++++.+.++|..+++.+++.+....++||+.|++.+++.++..++.+.+.+
T Consensus       126 ~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  205 (447)
T d1pw4a_         126 CGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMR  205 (447)
T ss_dssp             HHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcc
Confidence            57888889999999999999999999999999999999999999999988877656999999999988888888888887


Q ss_pred             CCcCccccCcc---------------ccccccHHHHHHHHhhhhhhHHHHH--HHH----HHHHHHHHHHhcCCCCcchh
Q psy5252          82 DPERGEAEGRV---------------TEERTSFGEDIRALCKNHRETWIFL--NLN----WSIVADMTLYVVLPLRRSTA  140 (285)
Q Consensus        82 ~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~  140 (285)
                      ++++.......               +++........+..++++.++....  ...    +........+..+....+..
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (447)
T d1pw4a_         206 DTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALD  285 (447)
T ss_dssp             CSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHH
T ss_pred             cchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccc
Confidence            76543221100               0011112233455666666654221  111    11111122233232233333


Q ss_pred             HHHHHHHhhhccccchhhhhHHHhHHhhhhhcccceee-----e---eeccc--ccc--c-cccc-ccccc-ccCCcchh
Q psy5252         141 EAFQILISHAFGDAGSPYLIGLLSEMFRHSLQLGASTL-----V---ANAML--PSS--L-APSL-PFSSS-NSTSLPLV  205 (285)
Q Consensus       141 ~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~~~~~~-----~---~~~~~--~~~--~-~~~~-~~~~~-~~~~~~~~  205 (285)
                      ..........++.+++.++.|+++||++++........     .   ..+..  ...  + ...+ ....+ .+......
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  365 (447)
T d1pw4a_         286 KSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIG  365 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             hhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23233333345667778899999999988754433110     0   01111  111  1 1111 11111 22333456


Q ss_pred             hhhccccCCcchh-----------h-hccccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy5252         206 SSLDETAHRSDEF-----------L-AHKSDEFLAHKSDEFLALQYALFITSFIEVLGGIFFLLGS  259 (285)
Q Consensus       206 ~~~~~~~p~~~r~-----------l-~~~~~p~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (285)
                      ....|.+|++.|.           + +...+|.+.|.+.|+.|++..++....+.+++.+++....
T Consensus       366 ~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  431 (447)
T d1pw4a_         366 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  431 (447)
T ss_dssp             HHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788999999882           2 2356889999999999999988877777777666655443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=1.2e-13  Score=116.35  Aligned_cols=234  Identities=9%  Similarity=-0.015  Sum_probs=131.8

Q ss_pred             chhHHHHHHHHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhccCCcCccccCcc--ccccccHHHH
Q psy5252          25 LRSQMLAFFYFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFMEDPERGEAEGRV--TEERTSFGED  102 (285)
Q Consensus        25 ~rg~~~gi~~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~  102 (285)
                      ++.+..+........+..+++.+++.+.+. + |+..+........+..++..+..+++++...++++  ++++......
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (417)
T d1pv7a_         135 RSNFEFGRARMFGCVGWALGASIVGIMFTI-N-NQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKL  212 (417)
T ss_dssp             HHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-C-HHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCCCCHHH
T ss_pred             hhHHHHHHHhhhhccccccccccccccccc-c-ccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhcccccccc
Confidence            455677888888899999999999999885 3 77777777766666666666666665544332221  1111112222


Q ss_pred             HHHHhhhhhhHH-----HHHHHHHHHHHH-HHH---HhcCCCCcchhHHHHHHHhhhccccchhhhhHHHhHHhhhhhcc
Q psy5252         103 IRALCKNHRETW-----IFLNLNWSIVAD-MTL---YVVLPLRRSTAEAFQILISHAFGDAGSPYLIGLLSEMFRHSLQL  173 (285)
Q Consensus       103 ~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~G~l~d~~~~~~~~  173 (285)
                      .....+++..+.     ............ ...   ........+............++..++..+.+++.||.++++..
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~  292 (417)
T d1pv7a_         213 ALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNAL  292 (417)
T ss_dssp             HHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHH
T ss_pred             cccccccccccchhhhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccch
Confidence            333333333222     111111111100 111   11111111222222333344455666778999999999998765


Q ss_pred             cceeeee-----eccc-ccc--c-ccccccccc-ccCCcchhhhhccccCCcchh------------hhccccchhhhhh
Q psy5252         174 GASTLVA-----NAML-PSS--L-APSLPFSSS-NSTSLPLVSSLDETAHRSDEF------------LAHKSDEFLAHKS  231 (285)
Q Consensus       174 ~~~~~~~-----~~~~-~~~--~-~~~~~~~~~-~~~~~~~~~~~~~~~p~~~r~------------l~~~~~p~~~G~~  231 (285)
                      .......     .... ++.  . ....+...+ .....+..+.++|.+|++.|.            ++..++|.+.|++
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l  372 (417)
T d1pv7a_         293 LLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM  372 (417)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5422111     1111 111  1 111112222 233455678889999999981            4557999999999


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy5252         232 DEFLALQYALFITSFIEVLGGIFFLLGSL  260 (285)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (285)
                      .|+.|++..+++.+++.++..++..+..+
T Consensus       373 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~  401 (417)
T d1pv7a_         373 YESIGFQGAYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999998888877777666655544

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=8.5e-08  Score=79.59  Aligned_cols=83  Identities=10%  Similarity=0.097  Sum_probs=72.3

Q ss_pred             cccccccccchhHHHHhhcccCCchhHHHHHH-HHHHhhHHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhc
Q psy5252           2 VGIGEASYSTIAPTIISDLFVKDLRSQMLAFF-YFAIPIGSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFM   80 (285)
Q Consensus         2 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~-~~~~~iG~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~   80 (285)
                      .|++.+...+...+++.|.+|+|+|++.+++. +....+|..++|.+.+++.+.+| |+..|++.+++.++..++..+.+
T Consensus       322 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~l  400 (417)
T d1pv7a_         322 HMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTL  400 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHhh
Confidence            46777888899999999999999999999986 56678999999999999999996 99999999998888887877777


Q ss_pred             cCCcC
Q psy5252          81 EDPER   85 (285)
Q Consensus        81 ~~~~~   85 (285)
                      +++++
T Consensus       401 ~~~~~  405 (417)
T d1pv7a_         401 SGPGP  405 (417)
T ss_dssp             CCSSC
T ss_pred             cCCCc
Confidence            76543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=1.7e-06  Score=72.87  Aligned_cols=79  Identities=16%  Similarity=0.078  Sum_probs=63.6

Q ss_pred             ccccccccchhHHHHhhcccCCchhHHHHHHHHHHhh-HHHHHHHHHHHhhhccCCchHHHHHhhHHHHHHHHHHHHhcc
Q psy5252           3 GIGEASYSTIAPTIISDLFVKDLRSQMLAFFYFAIPI-GSGLGYIVGSTAFSVMGAWPWSLRVTPVLGACAVLLILFFME   81 (285)
Q Consensus         3 G~g~~~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~i-G~~~g~~l~~~l~~~~g~wr~~f~i~~~~~~~~~~l~~~~~~   81 (285)
                      |++.+...+....+..|.+|+++|++++|+.+...++ |..++|.+.+.+.+.+| |+..|++.++..++..++...+.+
T Consensus       354 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~  432 (447)
T d1pw4a_         354 GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIVVMI  432 (447)
T ss_dssp             HHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666778888999999999999999999887776 66778999999999986 999998887777666655555544


Q ss_pred             C
Q psy5252          82 D   82 (285)
Q Consensus        82 ~   82 (285)
                      +
T Consensus       433 ~  433 (447)
T d1pw4a_         433 G  433 (447)
T ss_dssp             H
T ss_pred             h
Confidence            3