Psyllid ID: psy5258

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
Protein Sequence
MPDAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIITPGTFMQRLNTLLTPWRDHQTVLARSLSLNGGITSDPAQIRLTSPEASDEV
Secondary Structure (PSIPRED)
cccEEEEEEEccHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEcHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccEEEHHHHHHHcHHHHHHHHHHHHHHHEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHEEHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccEEEEEcHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccHHccccccccccccccccEcccccccccc
Coil and Loop (DISEMBL)
MPDAILTSLINSCTSFIAGFVIFSVLGYMAHisgvpinevavegpglvfIVYPAAIATMPGSIFWSLIFFMMLLTLgldssfggSEAIITALsdefplignnREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLttyeplsyesyvypqWANVLGVAIASSSVIMIPGMAVYQMIITPGTFMQRLNTLLTPWRDHQTVLARSLslnggitsdpaqirltspeasdev
Flexible Loop (DISEMBL)
MPDAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIITPGTFMQRLNTLLTPWRDHQTVLARSLslnggitsdpaqirltspeasdev
Low Complexity Region (SEG)
MPDAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIITPGTFMQRLNTLLTPWRDHQTVLARSLSLNGGITSDPAQIRLTSPEASDEV
Disordered region (IsUnstruct)
****ILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIITPGTFMQRLNTLLTPWRDHQTVLARSLSLNG********************
Disordered Region (DISOPRED)
MPDAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIITPGTFMQRLNTLLTPWRDH********************************
Disordered Region (DISEMBL)
MPDAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIITPGTFMQRLNTLLTPWRDHQTVLARSLSLNGGITSDPAQIRL*********
Disordered Region (DISPRO)
MPDAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIITPGTFMQRLNTLLTPWRDHQTV*****************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPDAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIITPGTFMQRLNTLLTPWRDHQTVLARSLSLNGGITSDPAQIRLTSPEASDEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	252	2.2.26 [Sep-21-2011]
Q03614	615	Sodium-dependent dopamine	yes	N/A	0.865	0.354	0.434	4e-53
P23977	619	Sodium-dependent dopamine	yes	N/A	0.876	0.357	0.426	4e-52
Q61327	619	Sodium-dependent dopamine	yes	N/A	0.876	0.357	0.423	4e-51
O55192	617	Sodium-dependent noradren	no	N/A	0.900	0.367	0.409	4e-51
P51143	615	Sodium-dependent noradren	yes	N/A	0.900	0.369	0.406	9e-51
P23975	617	Sodium-dependent noradren	yes	N/A	0.900	0.367	0.406	2e-50
Q01959	620	Sodium-dependent dopamine	no	N/A	0.876	0.356	0.419	3e-50
Q9GJT6	620	Sodium-dependent dopamine	N/A	N/A	0.876	0.356	0.419	3e-50
P27922	693	Sodium-dependent dopamine	no	N/A	0.876	0.318	0.411	4e-49
A7Y2X0	790	Sodium- and chloride-depe	N/A	N/A	0.888	0.283	0.393	4e-47

>sp|Q03614|NTDO_CAEEL Sodium-dependent dopamine transporter OS=Caenorhabditis elegans GN=dat-1 PE=2 SV=3

 Score =  207 bits (528), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 112/258 (43%), Positives = 150/258 (58%), Gaps = 40/258 (15%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
           DA+ TS IN  TSF++GFVIFSVLGYM+  SG PI  VA EGPGLVF+VYP A++TMP +
Sbjct: 338 DALFTSFINCATSFLSGFVIFSVLGYMSCKSGKPIEAVAQEGPGLVFVVYPEALSTMPYA 397

Query: 63  IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASC 122
            FWS++FF+ML+TLGLDSSFGGSEAIIT LSDEFP++  NRE+F+ CLF+ Y V+G+A C
Sbjct: 398 PFWSVLFFLMLMTLGLDSSFGGSEAIITGLSDEFPILKKNREVFVGCLFAFYMVIGIAMC 457

Query: 123 AQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLT---------------------- 160
            +GG      L  Y   + +LIAV  E++    +YGL                       
Sbjct: 458 TEGGILIMEWLIIYGTTWGLLIAVFCEAMVIAYIYGLRQFVHDVKEMMGFRPGNYWKFCW 517

Query: 161 -----------------TYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIITP 203
                             Y+ L+Y+ Y YP  ANV+G+  A S    IP + +Y+ +   
Sbjct: 518 SCAAPFILLSMITSNFINYQALTYQDYTYPTAANVIGIIFALSGASFIPLVGIYKFVNAR 577

Query: 204 G-TFMQRLNTLLTPWRDH 220
           G T  ++   +  P+R  
Sbjct: 578 GNTISEKWQRVTMPYRKR 595

Terminates the action of dopamine by its high affinity sodium-dependent reuptake into presynaptic terminals.
Caenorhabditis elegans (taxid: 6239)

>sp|P23977|SC6A3_RAT Sodium-dependent dopamine transporter OS=Rattus norvegicus GN=Slc6a3 PE=2 SV=1

 Score =  204 bits (519), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 111/260 (42%), Positives = 152/260 (58%), Gaps = 39/260 (15%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
           DAI+T+ INS TSF +GFV+FS LGYMA    VPI +VA +GPGL+FI+YP AIAT+P S
Sbjct: 344 DAIITTSINSLTSFSSGFVVFSFLGYMAQKHNVPIRDVATDGPGLIFIIYPEAIATLPLS 403

Query: 63  IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASC 122
             W+ +FF+MLLTLG+DS+ GG E++IT L DEF L+  +RE+F   +    F++ L   
Sbjct: 404 SAWAAVFFLMLLTLGIDSAMGGMESVITGLVDEFQLLHRHRELFTLGIVLATFLLSLFCV 463

Query: 123 AQGGFYFFHLLDKYAAGYSILIAVLFESIA------------------------------ 152
             GG Y F LLD +AAG SIL  VL E+I                               
Sbjct: 464 TNGGIYVFTLLDHFAAGTSILFGVLIEAIGVAWFYGVQQFSDDIKQMTGQRPNLYWRLCW 523

Query: 153 ---------FIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIITP 203
                    +++V  + T+ P  Y +Y++P WAN LG  IA+SS+ M+P  A Y+    P
Sbjct: 524 KLVSPCFLLYVVVVSIVTFRPPHYGAYIFPDWANALGWIIATSSMAMVPIYATYKFCSLP 583

Query: 204 GTFMQRLNTLLTPWRDHQTV 223
           G+F ++L   +TP +DHQ V
Sbjct: 584 GSFREKLAYAITPEKDHQLV 603

Amine transporter. Terminates the action of dopamine by its high affinity sodium-dependent reuptake into presynaptic terminals.

Rattus norvegicus (taxid: 10116)

>sp|Q61327|SC6A3_MOUSE Sodium-dependent dopamine transporter OS=Mus musculus GN=Slc6a3 PE=1 SV=2

 Score =  201 bits (511), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 110/260 (42%), Positives = 151/260 (58%), Gaps = 39/260 (15%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
           DAI+T+ INS TSF +GFV+FS LGYMA    VPI +VA +GPGL+FI+YP AIAT+P S
Sbjct: 344 DAIITTSINSLTSFSSGFVVFSFLGYMAQKHNVPIRDVATDGPGLIFIIYPEAIATLPLS 403

Query: 63  IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASC 122
             W+ +FF+MLLTLG+DS+ GG E++IT L DEF L+  +RE+F   +    F++ L   
Sbjct: 404 SAWAAVFFLMLLTLGIDSAMGGMESVITGLVDEFQLLHRHRELFTLGIVLATFLLSLFCV 463

Query: 123 AQGGFYFFHLLDKYAAGYSILIAVLFESIA------------------------------ 152
             GG Y F LLD +AAG SIL  VL E+I                               
Sbjct: 464 TNGGIYVFTLLDHFAAGTSILFGVLIEAIGVAWFYGVQQFSDDIKQMTGQRPNLYWRLCW 523

Query: 153 ---------FIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIITP 203
                    +++V  + T+ P  Y +Y++P WAN LG  IA+SS+ M+P  A Y+    P
Sbjct: 524 KLVSPCFLLYVVVVSIVTFRPPHYGAYIFPDWANALGWIIATSSMAMVPIYATYKFCSLP 583

Query: 204 GTFMQRLNTLLTPWRDHQTV 223
           G+F ++L   +TP +D Q V
Sbjct: 584 GSFREKLAYAITPEKDRQLV 603

Amine transporter. Terminates the action of dopamine by its high affinity sodium-dependent reuptake into presynaptic terminals.

Mus musculus (taxid: 10090)

>sp|O55192|SC6A2_MOUSE Sodium-dependent noradrenaline transporter OS=Mus musculus GN=Slc6a2 PE=2 SV=2

 Score =  201 bits (511), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 109/266 (40%), Positives = 154/266 (57%), Gaps = 39/266 (14%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
           DA+LTS IN  TSFI+GF IFS+LGYMAH   V I +VA EG GLVFI+YP AI+T+ GS
Sbjct: 342 DALLTSTINCVTSFISGFAIFSILGYMAHEHKVNIEDVATEGAGLVFILYPEAISTLSGS 401

Query: 63  IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASC 122
            FW+++FF+MLL LGLDSS GG EA+IT L+D+F ++  +R++F   +    F++ L   
Sbjct: 402 TFWAVLFFLMLLALGLDSSMGGMEAVITGLADDFQVLKRHRKLFTCVVTISTFLLALFCI 461

Query: 123 AQGGFYFFHLLDKYAAGYSILIAVLFESIA------------------------------ 152
            +GG Y   LLD +AAG SIL AVL E+I                               
Sbjct: 462 TKGGIYVLTLLDTFAAGTSILFAVLMEAIGVSWFYGVDRFSNDIQQMMGFKPGLYWRLCW 521

Query: 153 ---------FIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIITP 203
                    F++V  +  ++PL+Y+ Y YP WAN +G  IA SS+I++P   +Y+ +   
Sbjct: 522 KFVSPAFLLFVVVVSIINFKPLTYDDYTYPPWANWVGWGIALSSMILVPAYVIYKFLSIR 581

Query: 204 GTFMQRLNTLLTPWRDHQTVLARSLS 229
           G+  +R+   +TP  +H  V  R + 
Sbjct: 582 GSLWERVAYGITPENEHHLVAQRDVR 607

Amine transporter. Terminates the action of noradrenaline by its high affinity sodium-dependent reuptake into presynaptic terminals.

Mus musculus (taxid: 10090)

>sp|P51143|SC6A2_BOVIN Sodium-dependent noradrenaline transporter OS=Bos taurus GN=SLC6A2 PE=2 SV=1

 Score =  200 bits (508), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 108/266 (40%), Positives = 155/266 (58%), Gaps = 39/266 (14%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
           DA+LTS IN  TSFI+GF IFS+LGYMAH   V I +VA EG GLVFI+YP AI+T+ GS
Sbjct: 340 DALLTSTINCVTSFISGFAIFSILGYMAHEHKVNIEDVATEGAGLVFILYPEAISTLSGS 399

Query: 63  IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASC 122
            FW+++FF+MLL LG+DSS GG EA+IT L+D+F ++  +R++F   +    F++ L   
Sbjct: 400 TFWAIVFFIMLLALGIDSSMGGMEAVITGLADDFQVLKRHRKLFTFAVSFGTFLLALFCI 459

Query: 123 AQGGFYFFHLLDKYAAGYSILIAVLFESIA------------------------------ 152
            +GG Y   LLD +AAG SIL AVL E+I                               
Sbjct: 460 TKGGIYVLTLLDTFAAGTSILFAVLMEAIGVSWFYGVDRFSNDIQQMMGFKPGLYWRLCW 519

Query: 153 ---------FIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIITP 203
                    F+++  +  ++PL+Y+ Y++P WAN +G  IA SS++++P   VY+   T 
Sbjct: 520 KFVSPAFLLFVVIVSIINFKPLTYDDYIFPLWANWVGWGIAGSSMVLVPAYIVYKFFSTR 579

Query: 204 GTFMQRLNTLLTPWRDHQTVLARSLS 229
           G+  +RL   +TP  +H  V  R + 
Sbjct: 580 GSIRERLAYGITPASEHHLVAQRDIR 605

Terminates the action of noradrenaline by its high affinity sodium-dependent reuptake into presynaptic terminals.

Bos taurus (taxid: 9913)

>sp|P23975|SC6A2_HUMAN Sodium-dependent noradrenaline transporter OS=Homo sapiens GN=SLC6A2 PE=1 SV=1

 Score =  199 bits (506), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 108/266 (40%), Positives = 156/266 (58%), Gaps = 39/266 (14%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
           DA+LTS IN  TSF++GF IFS+LGYMAH   V I +VA EG GLVFI+YP AI+T+ GS
Sbjct: 342 DALLTSSINCITSFVSGFAIFSILGYMAHEHKVNIEDVATEGAGLVFILYPEAISTLSGS 401

Query: 63  IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASC 122
            FW+++FF+MLL LGLDSS GG EA+IT L+D+F ++  +R++F   +    F++ L   
Sbjct: 402 TFWAVVFFVMLLALGLDSSMGGMEAVITGLADDFQVLKRHRKLFTFGVTFSTFLLALFCI 461

Query: 123 AQGGFYFFHLLDKYAAGYSILIAVLFESIA------------------------------ 152
            +GG Y   LLD +AAG SIL AVL E+I                               
Sbjct: 462 TKGGIYVLTLLDTFAAGTSILFAVLMEAIGVSWFYGVDRFSNDIQQMMGFRPGLYWRLCW 521

Query: 153 ---------FIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIITP 203
                    F++V  +  ++PL+Y+ Y++P WAN +G  IA SS++++P   +Y+ + T 
Sbjct: 522 KFVSPAFLLFVVVVSIINFKPLTYDDYIFPPWANWVGWGIALSSMVLVPIYVIYKFLSTQ 581

Query: 204 GTFMQRLNTLLTPWRDHQTVLARSLS 229
           G+  +RL   +TP  +H  V  R + 
Sbjct: 582 GSLWERLAYGITPENEHHLVAQRDIR 607

Amine transporter. Terminates the action of noradrenaline by its high affinity sodium-dependent reuptake into presynaptic terminals.

Homo sapiens (taxid: 9606)

>sp|Q01959|SC6A3_HUMAN Sodium-dependent dopamine transporter OS=Homo sapiens GN=SLC6A3 PE=1 SV=1

 Score =  198 bits (503), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 109/260 (41%), Positives = 151/260 (58%), Gaps = 39/260 (15%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
           DAI+T+ INS TSF +GFV+FS LGYMA    VPI +VA +GPGL+FI+YP AIAT+P S
Sbjct: 345 DAIVTTSINSLTSFSSGFVVFSFLGYMAQKHSVPIGDVAKDGPGLIFIIYPEAIATLPLS 404

Query: 63  IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASC 122
             W+++FF+MLLTLG+DS+ GG E++IT L DEF L+  +RE+F   +    F++ L   
Sbjct: 405 SAWAVVFFIMLLTLGIDSAMGGMESVITGLIDEFQLLHRHRELFTLFIVLATFLLSLFCV 464

Query: 123 AQGGFYFFHLLDKYAAGYSILIAVLFESIA------------------------------ 152
             GG Y F LLD +AAG SIL  VL E+I                               
Sbjct: 465 TNGGIYVFTLLDHFAAGTSILFGVLIEAIGVAWFYGVGQFSDDIQQMTGQRPSLYWRLCW 524

Query: 153 ---------FIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIITP 203
                    F++V  + T+ P  Y +Y++P WAN LG  IA+SS+ M+P  A Y+    P
Sbjct: 525 KLVSPCFLLFVVVVSIVTFRPPHYGAYIFPDWANALGWVIATSSMAMVPIYAAYKFCSLP 584

Query: 204 GTFMQRLNTLLTPWRDHQTV 223
           G+F ++L   + P +D + V
Sbjct: 585 GSFREKLAYAIAPEKDRELV 604

Amine transporter. Terminates the action of dopamine by its high affinity sodium-dependent reuptake into presynaptic terminals.

Homo sapiens (taxid: 9606)

>sp|Q9GJT6|SC6A3_MACFA Sodium-dependent dopamine transporter OS=Macaca fascicularis GN=SLC6A3 PE=2 SV=1

 Score =  198 bits (503), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 109/260 (41%), Positives = 151/260 (58%), Gaps = 39/260 (15%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
           DAI+T+ INS TSF +GFV+FS LGYMA    VPI +VA +GPGL+FI+YP AIAT+P S
Sbjct: 345 DAIVTTSINSLTSFSSGFVVFSFLGYMAQKHSVPIGDVAKDGPGLIFIIYPEAIATLPLS 404

Query: 63  IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASC 122
             W+++FF+MLLTLG+DS+ GG E++IT L DEF L+  +RE+F   +    F++ L   
Sbjct: 405 SAWAVVFFIMLLTLGIDSAMGGMESVITGLIDEFQLLHRHRELFTLFIVLATFLLSLFCV 464

Query: 123 AQGGFYFFHLLDKYAAGYSILIAVLFESIA------------------------------ 152
             GG Y F LLD +AAG SIL  VL E+I                               
Sbjct: 465 TNGGIYVFTLLDHFAAGTSILFGVLIEAIGVAWFYGVGQFSDDIQQMTGQRPSLYWRLCW 524

Query: 153 ---------FIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIITP 203
                    F++V  + T+ P  Y +Y++P WAN LG  IA+SS+ M+P  A Y+    P
Sbjct: 525 KLVSPCFLLFVVVVSIVTFRPPHYGAYIFPDWANALGWVIATSSMAMVPIYAAYKFCSLP 584

Query: 204 GTFMQRLNTLLTPWRDHQTV 223
           G+F ++L   + P +D + V
Sbjct: 585 GSFREKLAYAIAPEKDRELV 604

Amine transporter. Terminates the action of dopamine by its high affinity sodium-dependent reuptake into presynaptic terminals.

Macaca fascicularis (taxid: 9541)

>sp|P27922|SC6A3_BOVIN Sodium-dependent dopamine transporter OS=Bos taurus GN=SLC6A3 PE=2 SV=1

 Score =  194 bits (494), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 107/260 (41%), Positives = 152/260 (58%), Gaps = 39/260 (15%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
           DAI+T+ +NS TSF +GFV+FS LGYMA    VPI +VA +GPGL+FI+YP A+AT+P S
Sbjct: 342 DAIITTSVNSLTSFSSGFVVFSFLGYMAQKHSVPIGDVAKDGPGLIFIIYPEALATLPLS 401

Query: 63  IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASC 122
             W+++FF+MLLTLG+DS+ GG E++IT L+DEF L+  +RE+F   +    F++ L   
Sbjct: 402 SVWAVVFFVMLLTLGIDSAMGGMESVITGLADEFQLLHRHRELFTLLVVLATFLLSLFCV 461

Query: 123 AQGGFYFFHLLDKYAAGYSILIAVLFESIA------------------------------ 152
             GG Y F LLD +AAG SIL  VL E I                               
Sbjct: 462 TNGGIYVFTLLDHFAAGTSILFGVLMEVIGVAWFYGVWQFSDDIKQMTGRRPSLYWRLCW 521

Query: 153 ---------FIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIITP 203
                    F++V  + T+ P  Y +YV+P+WA  LG AIA+SS+ ++P  A Y++   P
Sbjct: 522 KFVSPCFLLFVVVVSIATFRPPHYGAYVFPEWATALGWAIAASSMSVVPIYAAYKLCSLP 581

Query: 204 GTFMQRLNTLLTPWRDHQTV 223
           G+  ++L   +TP  +H  V
Sbjct: 582 GSSREKLAYAITPETEHGRV 601

Amine transporter. Terminates the action of dopamine by its high affinity sodium-dependent reuptake into presynaptic terminals.

Bos taurus (taxid: 9913)

>sp|A7Y2X0|SC6A5_XENLA Sodium- and chloride-dependent glycine transporter 2 OS=Xenopus laevis GN=slc6a5 PE=2 SV=1

 Score =  188 bits (477), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 104/264 (39%), Positives = 149/264 (56%), Gaps = 40/264 (15%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
           D ++ + INS TS  AGFVIFSV+G+MAHI  V I +VA +GPG+ F+VYP A+  +P S
Sbjct: 494 DTLIVTCINSATSIFAGFVIFSVIGFMAHILNVDIEKVADQGPGIAFVVYPEALTRLPLS 553

Query: 63  IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFP-LIGNNREIFIACLFSLYFVVGLAS 121
            FW++IFF+MLLTLGLD+ F   E I+T++SDEFP L+  ++ +F       +F++G   
Sbjct: 554 PFWAIIFFLMLLTLGLDTMFATIETIVTSVSDEFPKLLRTHKPLFTLVCCVAFFIMGFPM 613

Query: 122 CAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLT--------------------- 160
             QGG Y   L+D YAA YS++I  +FE +    +YGL                      
Sbjct: 614 ITQGGIYMLQLVDNYAASYSLVIIAIFELVGISYIYGLQRFCEDIEMMIGFQPSRFWKIC 673

Query: 161 ------------------TYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIIT 202
                              +EP++Y SY YP W+ V+G  + + SVI IP M V +M + 
Sbjct: 674 WAFVTPTILTFILGFSFYQWEPMTYGSYHYPSWSMVMGWLMLACSVIWIPIMFVIKMFLA 733

Query: 203 PGTFMQRLNTLLTPWRDHQTVLAR 226
           PGTF++RL  + +P  D    LA+
Sbjct: 734 PGTFIERLKLVCSPQPDWGPFLAK 757

Terminates the action of glycine by its high affinity sodium-dependent reuptake into presynaptic terminals. May be responsible for the termination of neurotransmission at strychnine-sensitive glycinergic synapses.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
387762416	612	high-affinity dopamine transporter [Gryl	0.968	0.398	0.653	2e-99
170049842	559	norepinephrine/norepinephrine transporte	0.968	0.436	0.648	1e-96
242006175	483	tryptophan transporter, putative [Pedicu	0.964	0.503	0.625	4e-96
158285793	665	AGAP007367-PA [Anopheles gambiae str. PE	0.968	0.366	0.644	2e-95
157125171	670	norepinephrine/norepinephrine transporte	0.964	0.362	0.647	6e-95
307189955	682	Sodium-dependent dopamine transporter [C	0.873	0.322	0.694	1e-94
195093290	557	GH17990 [Drosophila grimshawi] gi|193905	0.960	0.434	0.635	5e-93
195026306	627	GH20642 [Drosophila grimshawi] gi|193902	0.960	0.385	0.635	7e-93
195122110	626	GI19005 [Drosophila mojavensis] gi|19391	0.960	0.386	0.635	1e-92
270012969	795	hypothetical protein TcasGA2_TC005219 [T	0.956	0.303	0.696	1e-92

>gi|387762416|dbj|BAM15639.1| high-affinity dopamine transporter [Gryllus bimaculatus]

 Score =  367 bits (943), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 189/289 (65%), Positives = 213/289 (73%), Gaps = 45/289 (15%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
           DA+LTS+INS TSF+AGFVIFSVLGYMAH SG PI EVA EGPGLVFIVYPAAIATMPGS
Sbjct: 330 DALLTSVINSATSFVAGFVIFSVLGYMAHASGKPIQEVATEGPGLVFIVYPAAIATMPGS 389

Query: 63  IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASC 122
           IFW+LIFFMMLLTLGLDSSFGGSEAIITALSDEFP++G NREIF+ACLFSLYF+VGLASC
Sbjct: 390 IFWALIFFMMLLTLGLDSSFGGSEAIITALSDEFPIVGKNREIFVACLFSLYFLVGLASC 449

Query: 123 AQGGFYFFHLLDKYAAGYSILIAVLFESIA------------------------------ 152
            QGGFYFFHLLD+YAAGYS+L AVLFESIA                              
Sbjct: 450 TQGGFYFFHLLDRYAAGYSMLFAVLFESIAVSWIYGTQRFCDDIKDMIGFSPGVYWRVCW 509

Query: 153 ---------FIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIITP 203
                    FIIVYGL  YEPL+Y+ YVYP WAN++G  IA SS+IMIPGMA Y+++ TP
Sbjct: 510 RFVAPAFLMFIIVYGLIGYEPLTYDEYVYPAWANLIGWLIAGSSIIMIPGMAAYKLLTTP 569

Query: 204 GTFMQRLNTLLTPWRDHQTVLARSLSLNGGITSDPAQIRLTSPEASDEV 252
           GTF QRL  L TPWRDHQ      ++   G+ +D  QIRL S   +D+V
Sbjct: 570 GTFTQRLKYLTTPWRDHQ------IAAINGVQTDSTQIRLASSPQADDV 612

Source: Gryllus bimaculatus

Species: Gryllus bimaculatus

Genus: Gryllus

Family: Gryllidae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170049842|ref|XP_001870937.1| norepinephrine/norepinephrine transporter [Culex quinquefasciatus] gi|167871543|gb|EDS34926.1| norepinephrine/norepinephrine transporter [Culex quinquefasciatus]

 Score =  358 bits (919), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 188/290 (64%), Positives = 214/290 (73%), Gaps = 46/290 (15%)

Query: 2   PDAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPG 61
            DAILTS INS TSF+AGFVIFSVLGYMAH SG  I +VA EGPGLVF+VYPAAIATMPG
Sbjct: 277 KDAILTSFINSATSFVAGFVIFSVLGYMAHASGQNIEDVATEGPGLVFVVYPAAIATMPG 336

Query: 62  SIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLAS 121
           SIFW+LIFFMMLLTLGLDSSFGGSEAIITALSDEFP IG NREIF+A LFSLYFVVGLAS
Sbjct: 337 SIFWALIFFMMLLTLGLDSSFGGSEAIITALSDEFPKIGRNREIFVAGLFSLYFVVGLAS 396

Query: 122 CAQGGFYFFHLLDKYAAGYSILIAVLFESIA----------------------------- 152
           C QGGFYFF LLD+YAAGYSILIAVLFE+IA                             
Sbjct: 397 CTQGGFYFFQLLDRYAAGYSILIAVLFEAIAVSWIYGTQRFCDDIKDMIGFAPGIYWRVC 456

Query: 153 ----------FIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIIT 202
                     FII+YGL  YEPLSYE YVYP WAN LG  IA SS+IMIP +A Y++++T
Sbjct: 457 WKFVAPLFLLFIIIYGLIGYEPLSYEDYVYPPWANALGWCIAGSSMIMIPLVACYKLLVT 516

Query: 203 PGTFMQRLNTLLTPWRDHQTVLARSLSLNGGITSDPAQIRLTSPEASDEV 252
           PGTF+QR+  L TPWRD Q      +++N G+T++PAQ+RLT+ +  +EV
Sbjct: 517 PGTFLQRMKILTTPWRDQQ------MAVN-GVTTEPAQVRLTNSDEGEEV 559

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242006175|ref|XP_002423929.1| tryptophan transporter, putative [Pediculus humanus corporis] gi|212507199|gb|EEB11191.1| tryptophan transporter, putative [Pediculus humanus corporis]

 Score =  356 bits (914), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 180/288 (62%), Positives = 210/288 (72%), Gaps = 45/288 (15%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
           DA++TS+INS TSFIAGFVIFSVLGYMAH++   I EVA EGPGLVF+VYPAAIATMPGS
Sbjct: 200 DAVITSVINSVTSFIAGFVIFSVLGYMAHVTNRSIQEVATEGPGLVFVVYPAAIATMPGS 259

Query: 63  IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASC 122
           +FW+LIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIG NREIF+ CLF++YF+VGLASC
Sbjct: 260 VFWALIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGRNREIFVLCLFTVYFLVGLASC 319

Query: 123 AQGGFYFFHLLDKYAAGYSILIAVLFESIA------------------------------ 152
            QGGFYFF+LLD+YAAGYS+L AVLFESIA                              
Sbjct: 320 TQGGFYFFNLLDRYAAGYSMLFAVLFESIAVAWIYGNKRFCDDIKDMIGFVPGMYWQICW 379

Query: 153 ---------FIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIITP 203
                    FIIVYGL  YEPLSYE Y+YP WAN +G  IA+SS+ MIPGMA Y++I+TP
Sbjct: 380 KFAAPVFLLFIIVYGLVGYEPLSYEHYIYPSWANAIGWVIAASSMCMIPGMAAYKLIVTP 439

Query: 204 GTFMQRLNTLLTPWRDHQTVLARSLSLNGGITSDPAQIRLTSPEASDE 251
           GTF QR+  L TPWRD Q +         G++SD  QI+L+S E + +
Sbjct: 440 GTFKQRIKKLTTPWRDQQVIAVN------GVSSDANQIKLSSIEVNSQ 481

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158285793|ref|XP_308462.4| AGAP007367-PA [Anopheles gambiae str. PEST] gi|157020163|gb|EAA04277.4| AGAP007367-PA [Anopheles gambiae str. PEST]

 Score =  354 bits (908), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 187/290 (64%), Positives = 210/290 (72%), Gaps = 46/290 (15%)

Query: 2   PDAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPG 61
            DA+LTSLINS TSFIAGFVIFSVLGYMAH SG  I +VA EGPGLVF+VYPAAIATMPG
Sbjct: 383 KDALLTSLINSATSFIAGFVIFSVLGYMAHASGQSIQDVATEGPGLVFVVYPAAIATMPG 442

Query: 62  SIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLAS 121
           SIFW+LIFFMMLLTLGLDSSFGGSEAIITALSDEFP IG NREIF+A LFSLYFVVGLAS
Sbjct: 443 SIFWALIFFMMLLTLGLDSSFGGSEAIITALSDEFPKIGRNREIFVAVLFSLYFVVGLAS 502

Query: 122 CAQGGFYFFHLLDKYAAGYSILIAVLFESIA----------------------------- 152
           C QGGFYFF LLD+YAAGYSILIAV FE+IA                             
Sbjct: 503 CTQGGFYFFQLLDRYAAGYSILIAVFFEAIAVSWIYGTERFCNDIKDMIGFAPGIYWRVC 562

Query: 153 ----------FIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIIT 202
                     FII+YGL  +EPLSYE YVYP WANVLG  IA SS+IMIP MA Y++I+T
Sbjct: 563 WKFVAPLFLLFIIIYGLIGHEPLSYEDYVYPSWANVLGWCIAGSSMIMIPLMASYKLIVT 622

Query: 203 PGTFMQRLNTLLTPWRDHQTVLARSLSLNGGITSDPAQIRLTSPEASDEV 252
           PG+  QR   L TPWRD Q      +++N G++ +PAQ+RLT  +  +EV
Sbjct: 623 PGSLRQRFKILTTPWRDQQ------MAVN-GVSIEPAQVRLTHSDEGEEV 665

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157125171|ref|XP_001654246.1| norepinephrine/norepinephrine transporter [Aedes aegypti] gi|108873744|gb|EAT37969.1| AAEL010106-PA [Aedes aegypti]

 Score =  352 bits (904), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 187/289 (64%), Positives = 209/289 (72%), Gaps = 46/289 (15%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
           DAILTS INS TSF+AGFVIFSVLGYMAH SG  I +VA EGPGLVF+VYPAAIATMPGS
Sbjct: 389 DAILTSCINSATSFVAGFVIFSVLGYMAHASGQDIEDVATEGPGLVFVVYPAAIATMPGS 448

Query: 63  IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASC 122
           IFW+LIFFMMLLTLGLDSSFGGSEAIITALSDEFP IG NREIF+A LF+LYF VGLASC
Sbjct: 449 IFWALIFFMMLLTLGLDSSFGGSEAIITALSDEFPKIGRNREIFVAGLFTLYFFVGLASC 508

Query: 123 AQGGFYFFHLLDKYAAGYSILIAVLFESIA------------------------------ 152
            QGGFYFF LLD+YAAGYSILIAVLFE+IA                              
Sbjct: 509 TQGGFYFFQLLDRYAAGYSILIAVLFEAIAVSWIYGTKRFCDDIRDMIGFAPGIYWRVCW 568

Query: 153 ---------FIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIITP 203
                    FII+YGL  YEPLSYE YVYP WANVLG  IA SS+IMIP MA Y++++TP
Sbjct: 569 KFVAPLFLLFIIIYGLIGYEPLSYEDYVYPTWANVLGWCIAGSSMIMIPLMAFYKLLVTP 628

Query: 204 GTFMQRLNTLLTPWRDHQTVLARSLSLNGGITSDPAQIRLTSPEASDEV 252
           GT  QR   L TPWRD Q      +S+N G+  +PAQ+RLT+ +  +EV
Sbjct: 629 GTLRQRFVILTTPWRDQQ------MSVN-GVMVEPAQVRLTNSDEGEEV 670

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307189955|gb|EFN74191.1| Sodium-dependent dopamine transporter [Camponotus floridanus]

 Score =  352 bits (902), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 180/259 (69%), Positives = 200/259 (77%), Gaps = 39/259 (15%)

Query: 2   PDAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPG 61
            DA+LTSLINS TSF+AGFVIFSVLGYMAH SG  I +VA EGPGLVFIVYPAAIATMPG
Sbjct: 367 KDALLTSLINSATSFVAGFVIFSVLGYMAHASGKSIQDVATEGPGLVFIVYPAAIATMPG 426

Query: 62  SIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLAS 121
           S+FW+LIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIF+ACLF+LYF+VGLAS
Sbjct: 427 SMFWALIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFVACLFTLYFLVGLAS 486

Query: 122 CAQGGFYFFHLLDKYAAGYSILIAVLFESIA----------------------------- 152
           C+QGGFYFFHLLD+YAAGYS+L AVL E+IA                             
Sbjct: 487 CSQGGFYFFHLLDRYAAGYSMLFAVLAETIAVSWIYGTDRFCADIKDMISFRPGIYWRVC 546

Query: 153 ----------FIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIIT 202
                     FIIVYGL  YEPLSYE Y+YP WANVLG  IASSS++MIPGMA+Y++I T
Sbjct: 547 WKFVAPLFLMFIIVYGLMGYEPLSYEGYIYPVWANVLGWLIASSSIVMIPGMAIYKIITT 606

Query: 203 PGTFMQRLNTLLTPWRDHQ 221
           PG+F+QRL  L TPWRD Q
Sbjct: 607 PGSFVQRLKILTTPWRDTQ 625

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195093290|ref|XP_001997715.1| GH17990 [Drosophila grimshawi] gi|193905657|gb|EDW04524.1| GH17990 [Drosophila grimshawi]

 Score =  346 bits (888), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 183/288 (63%), Positives = 205/288 (71%), Gaps = 46/288 (15%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
           DA+LTS INS TSF+AGFVIFSVLGYMAH SGV I +VA EGPGLVF+VYPAAIATMPGS
Sbjct: 272 DALLTSFINSATSFVAGFVIFSVLGYMAHTSGVRIEDVATEGPGLVFVVYPAAIATMPGS 331

Query: 63  IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASC 122
           IFW+LIFFMMLLTLGLDSSFGGSEAIITALSDEFP I  NRE+F+A LFSLYFVVGLASC
Sbjct: 332 IFWALIFFMMLLTLGLDSSFGGSEAIITALSDEFPKIKRNRELFVAGLFSLYFVVGLASC 391

Query: 123 AQGGFYFFHLLDKYAAGYSILIAVLFESIA------------------------------ 152
            QGGFYFFHLLD+YAAGYSIL+AV FE+IA                              
Sbjct: 392 TQGGFYFFHLLDRYAAGYSILVAVFFEAIAVSWIYGTKRFSDDIRDMIGFPPGRYWVVCW 451

Query: 153 ---------FIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIITP 203
                    FI VYGL  YEPL+Y  YVYP WAN LG  IA SS+IMIPG+A Y++I+TP
Sbjct: 452 RFVAPLFLLFITVYGLLGYEPLTYGDYVYPNWANALGWCIAGSSIIMIPGLATYKLIVTP 511

Query: 204 GTFMQRLNTLLTPWRDHQTVLARSLSLNGGITSDPAQ-IRLTSPEASD 250
           G+F QR+ TL TPWRD Q      L++NG  T      +RL   EA+D
Sbjct: 512 GSFRQRIRTLTTPWRDQQ------LAVNGVATEVTVTLVRLADAEATD 553

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195026306|ref|XP_001986227.1| GH20642 [Drosophila grimshawi] gi|193902227|gb|EDW01094.1| GH20642 [Drosophila grimshawi]

 Score =  346 bits (887), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 183/288 (63%), Positives = 205/288 (71%), Gaps = 46/288 (15%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
           DA+LTS INS TSF+AGFVIFSVLGYMAH SGV I +VA EGPGLVF+VYPAAIATMPGS
Sbjct: 342 DALLTSFINSATSFVAGFVIFSVLGYMAHTSGVRIEDVATEGPGLVFVVYPAAIATMPGS 401

Query: 63  IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASC 122
           IFW+LIFFMMLLTLGLDSSFGGSEAIITALSDEFP I  NRE+F+A LFSLYFVVGLASC
Sbjct: 402 IFWALIFFMMLLTLGLDSSFGGSEAIITALSDEFPKIKRNRELFVAGLFSLYFVVGLASC 461

Query: 123 AQGGFYFFHLLDKYAAGYSILIAVLFESIA------------------------------ 152
            QGGFYFFHLLD+YAAGYSIL+AV FE+IA                              
Sbjct: 462 TQGGFYFFHLLDRYAAGYSILVAVFFEAIAVSWIYGTKRFSDDIRDMIGFPPGRYWVVCW 521

Query: 153 ---------FIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIITP 203
                    FI VYGL  YEPL+Y  YVYP WAN LG  IA SS+IMIPG+A Y++I+TP
Sbjct: 522 RFVAPLFLLFITVYGLLGYEPLTYGDYVYPNWANALGWCIAGSSIIMIPGLATYKLIVTP 581

Query: 204 GTFMQRLNTLLTPWRDHQTVLARSLSLNGGITSDPAQ-IRLTSPEASD 250
           G+F QR+ TL TPWRD Q      L++NG  T      +RL   EA+D
Sbjct: 582 GSFRQRIRTLTTPWRDQQ------LAVNGVATEVTVTLVRLADAEATD 623

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195122110|ref|XP_002005555.1| GI19005 [Drosophila mojavensis] gi|193910623|gb|EDW09490.1| GI19005 [Drosophila mojavensis]

 Score =  345 bits (884), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 183/288 (63%), Positives = 205/288 (71%), Gaps = 46/288 (15%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
           DA+LTS INS TSF+AGFVIFSVLGYMAH SGV I +VA EGPGLVF+VYPAAIATMPGS
Sbjct: 341 DALLTSFINSATSFVAGFVIFSVLGYMAHTSGVRIEDVATEGPGLVFVVYPAAIATMPGS 400

Query: 63  IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASC 122
           IFW+LIFFMMLLTLGLDSSFGGSEAIITALSDEFP I  NRE+F+A LFSLYFVVGLASC
Sbjct: 401 IFWALIFFMMLLTLGLDSSFGGSEAIITALSDEFPKIRKNRELFVAALFSLYFVVGLASC 460

Query: 123 AQGGFYFFHLLDKYAAGYSILIAVLFESIA------------------------------ 152
            QGGFYFFHLLD+YAAGYSIL+AV FE+IA                              
Sbjct: 461 TQGGFYFFHLLDRYAAGYSILVAVFFEAIAVSWIYGTKRFSDDIRDMIGFPPGMYWQVCW 520

Query: 153 ---------FIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIITP 203
                    FI VYGL  YEPL+Y  YVYP WAN LG +IA SSV MIP +A+Y++I+TP
Sbjct: 521 RFVAPIFLLFITVYGLLGYEPLTYGDYVYPDWANALGWSIAGSSVTMIPAVAIYKLIVTP 580

Query: 204 GTFMQRLNTLLTPWRDHQTVLARSLSLNGGITSDPAQ-IRLTSPEASD 250
           G+F QRL TL TPWRD Q      L++NG  T      +RL   EA+D
Sbjct: 581 GSFRQRLRTLTTPWRDQQ------LAVNGVATEVTVTLVRLADTEAND 622

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270012969|gb|EFA09417.1| hypothetical protein TcasGA2_TC005219 [Tribolium castaneum]

 Score =  345 bits (884), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 179/257 (69%), Positives = 201/257 (78%), Gaps = 16/257 (6%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
           DAILTS+INS TSFIAGFVIFSVLGYMAH +G  I EVA EGPGLVF+VYPAAIATMPGS
Sbjct: 534 DAILTSVINSATSFIAGFVIFSVLGYMAHAAGCSIQEVATEGPGLVFVVYPAAIATMPGS 593

Query: 63  IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASC 122
           IFW+LIFFMMLLTLGLDSSFGGSEAIITALSDEFP IG +REIF+ACLF LYFVVGLASC
Sbjct: 594 IFWALIFFMMLLTLGLDSSFGGSEAIITALSDEFPRIGRHREIFVACLFFLYFVVGLASC 653

Query: 123 AQGGFYFFHLLDKYAAGYS-ILIAVLFESIA-----------FIIVYGLTTYEPLSYESY 170
           +QGGFYFF L   YAAGYS       FE+IA           FIIVYGL  YEPLSYE Y
Sbjct: 654 SQGGFYFFLLPAPYAAGYSKKKKGGGFEAIAVSWIYDPVFLLFIIVYGLLGYEPLSYEDY 713

Query: 171 VYPQWANVLGVAIASSSVIMIPGMAVYQMIITPGTFMQRLNTLLTPWRDHQTVLARSLSL 230
           VYP WAN+LG  IA SSV+MIP +A+++++ TPG+F +RL  L TPWRD QT    S  +
Sbjct: 714 VYPAWANILGWLIACSSVVMIPVVAIFKLLTTPGSFFKRLQILTTPWRDTQT----STQV 769

Query: 231 NGGITSDPAQIRLTSPE 247
           NG + S+  Q+RL SPE
Sbjct: 770 NGVVRSESNQVRLASPE 786

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
FB|FBgn0034136	631	DAT "Dopamine transporter" [Dr	0.634	0.253	0.8	2.7e-90
WB|WBGene00000934	615	dat-1 [Caenorhabditis elegans	0.634	0.260	0.581	1.1e-56
RGD|3715	619	Slc6a3 "solute carrier family	0.634	0.258	0.525	5.9e-56
MGI|MGI:94862	619	Slc6a3 "solute carrier family	0.634	0.258	0.525	4.1e-55
UNIPROTKB|F1RF13	625	SLC6A2 "Transporter" [Sus scro	0.634	0.256	0.525	4.6e-55
UNIPROTKB|Q9DGN5	635	SLC6A2 "Transporter" [Gallus g	0.634	0.251	0.531	8.9e-55
RGD|621822	597	Slc6a2 "solute carrier family	0.630	0.266	0.527	1.1e-54
UNIPROTKB|F1LNR9	597	Slc6a2 "Transporter" [Rattus n	0.630	0.266	0.527	1.1e-54
UNIPROTKB|F1LQW0	567	Slc6a2 "Transporter" [Rattus n	0.630	0.280	0.527	1.1e-54
UNIPROTKB|B4DX48	512	SLC6A2 "Transporter" [Homo sap	0.630	0.310	0.534	1.1e-54

FB|FBgn0034136 DAT "Dopamine transporter" [Drosophila melanogaster (taxid:7227)]

 Score = 655 (235.6 bits), Expect = 2.7e-90, Sum P(2) = 2.7e-90
 Identities = 128/160 (80%), Positives = 139/160 (86%)

Query:     3 DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
             DA+LTS INS TSFIAGFVIFSVLGYMAH  GV I +VA EGPGLVF+VYPAAIATMP S
Sbjct:   344 DALLTSFINSATSFIAGFVIFSVLGYMAHTLGVRIEDVATEGPGLVFVVYPAAIATMPAS 403

Query:    63 IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASC 122
              FW+LIFFMMLLTLGLDSSFGGSEAIITALSDEFP I  NRE+F+A LFSLYFVVGLASC
Sbjct:   404 TFWALIFFMMLLTLGLDSSFGGSEAIITALSDEFPKIKRNRELFVAGLFSLYFVVGLASC 463

Query:   123 AQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTY 162
              QGGFYFFHLLD+YAAGYSIL+AV FE+IA   +YG   +
Sbjct:   464 TQGGFYFFHLLDRYAAGYSILVAVFFEAIAVSWIYGTNRF 503

GO:0005330 "dopamine:sodium symporter activity" evidence=ISS

GO:0005329 "dopamine transmembrane transporter activity" evidence=IDA;NAS

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0019811 "cocaine binding" evidence=NAS;IDA

GO:0015872 "dopamine transport" evidence=IDA

GO:0006836 "neurotransmitter transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0042745 "circadian sleep/wake cycle" evidence=IDA

GO:0030431 "sleep" evidence=IMP

WB|WBGene00000934 dat-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 500 (181.1 bits), Expect = 1.1e-56, Sum P(2) = 1.1e-56
 Identities = 93/160 (58%), Positives = 119/160 (74%)

Query:     3 DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
             DA+ TS IN  TSF++GFVIFSVLGYM+  SG PI  VA EGPGLVF+VYP A++TMP +
Sbjct:   338 DALFTSFINCATSFLSGFVIFSVLGYMSCKSGKPIEAVAQEGPGLVFVVYPEALSTMPYA 397

Query:    63 IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASC 122
              FWS++FF+ML+TLGLDSSFGGSEAIIT LSDEFP++  NRE+F+ CLF+ Y V+G+A C
Sbjct:   398 PFWSVLFFLMLMTLGLDSSFGGSEAIITGLSDEFPILKKNREVFVGCLFAFYMVIGIAMC 457

Query:   123 AQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTY 162
              +GG      L  Y   + +LIAV  E++    +YGL  +
Sbjct:   458 TEGGILIMEWLIIYGTTWGLLIAVFCEAMVIAYIYGLRQF 497

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0006836 "neurotransmitter transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0051583 "dopamine uptake involved in synaptic transmission" evidence=IDA

GO:0015837 "amine transport" evidence=IMP

GO:0006821 "chloride transport" evidence=IDA

GO:0042734 "presynaptic membrane" evidence=IDA

GO:0005330 "dopamine:sodium symporter activity" evidence=IDA

GO:0005275 "amine transmembrane transporter activity" evidence=IMP

GO:0005254 "chloride channel activity" evidence=IDA

RGD|3715 Slc6a3 "solute carrier family 6 (neurotransmitter transporter, dopamine), member 3" [Rattus norvegicus (taxid:10116)]

 Score = 425 (154.7 bits), Expect = 5.9e-56, Sum P(2) = 5.9e-56
 Identities = 84/160 (52%), Positives = 110/160 (68%)

Query:     3 DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
             DAI+T+ INS TSF +GFV+FS LGYMA    VPI +VA +GPGL+FI+YP AIAT+P S
Sbjct:   344 DAIITTSINSLTSFSSGFVVFSFLGYMAQKHNVPIRDVATDGPGLIFIIYPEAIATLPLS 403

Query:    63 IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASC 122
               W+ +FF+MLLTLG+DS+ GG E++IT L DEF L+  +RE+F   +    F++ L   
Sbjct:   404 SAWAAVFFLMLLTLGIDSAMGGMESVITGLVDEFQLLHRHRELFTLGIVLATFLLSLFCV 463

Query:   123 AQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTY 162
               GG Y F LLD +AAG SIL  VL E+I     YG+  +
Sbjct:   464 TNGGIYVFTLLDHFAAGTSILFGVLIEAIGVAWFYGVQQF 503

GO:0002020 "protease binding" evidence=IPI

GO:0005102 "receptor binding" evidence=IPI

GO:0005329 "dopamine transmembrane transporter activity" evidence=ISO;IDA

GO:0005330 "dopamine:sodium symporter activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0007568 "aging" evidence=IEP

GO:0007595 "lactation" evidence=IEA;ISO

GO:0007608 "sensory perception of smell" evidence=IEA;ISO

GO:0007626 "locomotory behavior" evidence=IEA;ISO

GO:0008144 "drug binding" evidence=IDA

GO:0008504 "monoamine transmembrane transporter activity" evidence=ISO

GO:0010039 "response to iron ion" evidence=IEP

GO:0014070 "response to organic cyclic compound" evidence=IEP

GO:0015844 "monoamine transport" evidence=ISO

GO:0015872 "dopamine transport" evidence=ISO;IDA

GO:0021984 "adenohypophysis development" evidence=IEA;ISO

GO:0030424 "axon" evidence=IEA;ISO

GO:0032403 "protein complex binding" evidence=IDA

GO:0035094 "response to nicotine" evidence=IEP

GO:0035240 "dopamine binding" evidence=IEA;ISO

GO:0040018 "positive regulation of multicellular organism growth" evidence=IEA;ISO

GO:0042053 "regulation of dopamine metabolic process" evidence=IEA;ISO

GO:0042220 "response to cocaine" evidence=IEA;ISO

GO:0042416 "dopamine biosynthetic process" evidence=IEA;ISO

GO:0042420 "dopamine catabolic process" evidence=IEA;ISO

GO:0042493 "response to drug" evidence=IEP

GO:0043005 "neuron projection" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IEA;ISO

GO:0045471 "response to ethanol" evidence=IDA

GO:0047485 "protein N-terminus binding" evidence=IEA;ISO

GO:0051591 "response to cAMP" evidence=IDA

GO:0055085 "transmembrane transport" evidence=ISO

GO:0060134 "prepulse inhibition" evidence=IEA;ISO

MGI|MGI:94862 Slc6a3 "solute carrier family 6 (neurotransmitter transporter, dopamine), member 3" [Mus musculus (taxid:10090)]

 Score = 425 (154.7 bits), Expect = 4.1e-55, Sum P(2) = 4.1e-55
 Identities = 84/160 (52%), Positives = 110/160 (68%)

Query:     3 DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
             DAI+T+ INS TSF +GFV+FS LGYMA    VPI +VA +GPGL+FI+YP AIAT+P S
Sbjct:   344 DAIITTSINSLTSFSSGFVVFSFLGYMAQKHNVPIRDVATDGPGLIFIIYPEAIATLPLS 403

Query:    63 IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASC 122
               W+ +FF+MLLTLG+DS+ GG E++IT L DEF L+  +RE+F   +    F++ L   
Sbjct:   404 SAWAAVFFLMLLTLGIDSAMGGMESVITGLVDEFQLLHRHRELFTLGIVLATFLLSLFCV 463

Query:   123 AQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTY 162
               GG Y F LLD +AAG SIL  VL E+I     YG+  +
Sbjct:   464 TNGGIYVFTLLDHFAAGTSILFGVLIEAIGVAWFYGVQQF 503

GO:0002020 "protease binding" evidence=ISO

GO:0005102 "receptor binding" evidence=ISO

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0005329 "dopamine transmembrane transporter activity" evidence=ISO;IMP

GO:0005330 "dopamine:sodium symporter activity" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006836 "neurotransmitter transport" evidence=IEA

GO:0007595 "lactation" evidence=IMP

GO:0007608 "sensory perception of smell" evidence=IMP

GO:0007626 "locomotory behavior" evidence=IGI;IMP

GO:0008144 "drug binding" evidence=ISO

GO:0008504 "monoamine transmembrane transporter activity" evidence=ISO

GO:0015293 "symporter activity" evidence=IEA

GO:0015844 "monoamine transport" evidence=ISO

GO:0015872 "dopamine transport" evidence=ISO;IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0021984 "adenohypophysis development" evidence=IMP

GO:0030424 "axon" evidence=ISO;IDA

GO:0032403 "protein complex binding" evidence=ISO

GO:0035240 "dopamine binding" evidence=IDA

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0042053 "regulation of dopamine metabolic process" evidence=IMP

GO:0042220 "response to cocaine" evidence=IDA

GO:0042416 "dopamine biosynthetic process" evidence=IMP

GO:0042420 "dopamine catabolic process" evidence=IMP

GO:0043005 "neuron projection" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0045471 "response to ethanol" evidence=ISO

GO:0047485 "protein N-terminus binding" evidence=IPI

GO:0051591 "response to cAMP" evidence=ISO

GO:0055085 "transmembrane transport" evidence=IMP

GO:0060134 "prepulse inhibition" evidence=IMP

UNIPROTKB|F1RF13 SLC6A2 "Transporter" [Sus scrofa (taxid:9823)]

 Score = 424 (154.3 bits), Expect = 4.6e-55, Sum P(2) = 4.6e-55
 Identities = 84/160 (52%), Positives = 113/160 (70%)

Query:     3 DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
             DA+LTS IN  TSFI+GF IFS+LGYMAH   V I +VA EG GL+FI+YP AI+T+ GS
Sbjct:   350 DALLTSTINCVTSFISGFAIFSILGYMAHEHKVNIEDVATEGAGLIFILYPEAISTLSGS 409

Query:    63 IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASC 122
              FW+++FF+MLL LG+DSS GG EA+IT L+D+FP++  +R++F   +    F++ L   
Sbjct:   410 TFWAVVFFIMLLALGIDSSMGGMEAVITGLADDFPVLKRHRKLFTFGVSFGTFLLALFCI 469

Query:   123 AQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTY 162
              +GG Y   LLD +AAG SIL AVL E+I     YG+  +
Sbjct:   470 TKGGIYVLTLLDTFAAGTSILFAVLMEAIGVSWFYGVDRF 509

GO:0048265 "response to pain" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

UNIPROTKB|Q9DGN5 SLC6A2 "Transporter" [Gallus gallus (taxid:9031)]

 Score = 422 (153.6 bits), Expect = 8.9e-55, Sum P(2) = 8.9e-55
 Identities = 85/160 (53%), Positives = 112/160 (70%)

Query:     3 DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
             DA+LTS IN  TSFI+GF IFS+LGYMAH   V I +VA EG GLVFI+YP AI+T+ GS
Sbjct:   360 DALLTSTINCVTSFISGFAIFSILGYMAHEHKVKIEDVATEGAGLVFILYPEAISTLSGS 419

Query:    63 IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASC 122
              FW+++FF+MLLTLG+DSS GG EA+IT L+D+F ++  +R++F   +    F++ L   
Sbjct:   420 TFWAVVFFIMLLTLGIDSSMGGMEAVITGLADDFHILKQHRKLFTFGVSFGTFLLALFCI 479

Query:   123 AQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTY 162
               GG Y   LLD +AAG SIL AVL E+I     YG+  +
Sbjct:   480 TNGGIYVLTLLDTFAAGTSILFAVLMEAIGVSWFYGVDRF 519

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0048265 "response to pain" evidence=IEA

RGD|621822 Slc6a2 "solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2" [Rattus norvegicus (taxid:10116)]

 Score = 424 (154.3 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
 Identities = 85/161 (52%), Positives = 114/161 (70%)

Query:     3 DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
             DA+LTS IN  TSFI+GF IFS+LGYMAH   V I +VA EG GLVF++YP AI+T+ GS
Sbjct:   292 DALLTSTINCVTSFISGFAIFSILGYMAHEHKVKIEDVATEGAGLVFVLYPEAISTLSGS 351

Query:    63 IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSL-YFVVGLAS 121
              FW+++FF+MLL LGLDSS GG EA+IT L+D+F ++  +R++F  C  +L  F++ +  
Sbjct:   352 TFWAVLFFLMLLALGLDSSMGGMEAVITGLADDFQVLKRHRKLF-TCAVTLGTFLLAMFC 410

Query:   122 CAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTY 162
               +GG Y   LLD +AAG SIL AVL E+I     YG+  +
Sbjct:   411 ITKGGIYVLTLLDTFAAGTSILFAVLMEAIGVSWFYGVDRF 451

GO:0005333 "norepinephrine transmembrane transporter activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0006836 "neurotransmitter transport" evidence=ISO

GO:0008504 "monoamine transmembrane transporter activity" evidence=ISO

GO:0009986 "cell surface" evidence=IDA

GO:0015844 "monoamine transport" evidence=ISO

GO:0015874 "norepinephrine transport" evidence=IDA

GO:0042493 "response to drug" evidence=IEP

GO:0043005 "neuron projection" evidence=IDA

GO:0043014 "alpha-tubulin binding" evidence=IDA

GO:0045121 "membrane raft" evidence=IDA

GO:0048265 "response to pain" evidence=ISO

GO:0048487 "beta-tubulin binding" evidence=IDA

UNIPROTKB|F1LNR9 Slc6a2 "Transporter" [Rattus norvegicus (taxid:10116)]

 Score = 424 (154.3 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
 Identities = 85/161 (52%), Positives = 114/161 (70%)

Query:     3 DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
             DA+LTS IN  TSFI+GF IFS+LGYMAH   V I +VA EG GLVF++YP AI+T+ GS
Sbjct:   292 DALLTSTINCVTSFISGFAIFSILGYMAHEHKVKIEDVATEGAGLVFVLYPEAISTLSGS 351

Query:    63 IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSL-YFVVGLAS 121
              FW+++FF+MLL LGLDSS GG EA+IT L+D+F ++  +R++F  C  +L  F++ +  
Sbjct:   352 TFWAVLFFLMLLALGLDSSMGGMEAVITGLADDFQVLKRHRKLF-TCAVTLGTFLLAMFC 410

Query:   122 CAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTY 162
               +GG Y   LLD +AAG SIL AVL E+I     YG+  +
Sbjct:   411 ITKGGIYVLTLLDTFAAGTSILFAVLMEAIGVSWFYGVDRF 451

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0048265 "response to pain" evidence=IEA

UNIPROTKB|F1LQW0 Slc6a2 "Transporter" [Rattus norvegicus (taxid:10116)]

 Score = 424 (154.3 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
 Identities = 85/161 (52%), Positives = 114/161 (70%)

Query:     3 DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
             DA+LTS IN  TSFI+GF IFS+LGYMAH   V I +VA EG GLVF++YP AI+T+ GS
Sbjct:   292 DALLTSTINCVTSFISGFAIFSILGYMAHEHKVKIEDVATEGAGLVFVLYPEAISTLSGS 351

Query:    63 IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSL-YFVVGLAS 121
              FW+++FF+MLL LGLDSS GG EA+IT L+D+F ++  +R++F  C  +L  F++ +  
Sbjct:   352 TFWAVLFFLMLLALGLDSSMGGMEAVITGLADDFQVLKRHRKLF-TCAVTLGTFLLAMFC 410

Query:   122 CAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTY 162
               +GG Y   LLD +AAG SIL AVL E+I     YG+  +
Sbjct:   411 ITKGGIYVLTLLDTFAAGTSILFAVLMEAIGVSWFYGVDRF 451

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

UNIPROTKB|B4DX48 SLC6A2 "Transporter" [Homo sapiens (taxid:9606)]

 Score = 421 (153.3 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
 Identities = 86/161 (53%), Positives = 113/161 (70%)

Query:     3 DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
             DA+LTS IN  TSF++GF IFS+LGYMAH   V I +VA EG GLVFI+YP AI+T+ GS
Sbjct:   237 DALLTSSINCITSFVSGFAIFSILGYMAHEHKVNIEDVATEGAGLVFILYPEAISTLSGS 296

Query:    63 IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIF-IACLFSLYFVVGLAS 121
              FW+++FF+MLL LGLDSS GG EA+IT L+D+F ++  +R++F     FS  F++ L  
Sbjct:   297 TFWAVVFFVMLLALGLDSSMGGMEAVITGLADDFQVLKRHRKLFTFGVTFST-FLLALFC 355

Query:   122 CAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTY 162
               +GG Y   LLD +AAG SIL AVL E+I     YG+  +
Sbjct:   356 ITKGGIYVLTLLDTFAAGTSILFAVLMEAIGVSWFYGVDRF 396

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	252
cd11556	552	cd11556, SLC6sbd_SERT-like_u1, uncharacterized sub	1e-111
cd11497	539	cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-depen	4e-95
cd11496	543	cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-depen	1e-75
pfam00209	506	pfam00209, SNF, Sodium:neurotransmitter symporter	8e-74
cd11513	537	cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent	8e-68
cd11512	560	cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent n	3e-64
cd11514	555	cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent	5e-64
cd11500	544	cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent	2e-60
cd10324	417	cd10324, SLC6sbd, Solute carrier 6 family, neurotr	2e-59
cd11510	542	cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent	2e-55
cd11499	606	cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent	4e-54
cd11506	598	cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent	4e-52
cd11501	601	cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent	4e-51
cd11507	544	cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent	8e-50
cd11509	592	cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent c	8e-49
cd11511	541	cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent	5e-48
cd11508	542	cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent	3e-47
cd11498	585	cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent	8e-42
cd10332	565	cd10332, SLC6sbd-B0AT-like, System B(0) neutral am	1e-36
cd10334	480	cd10334, SLC6sbd_u1, uncharacterized bacterial and	3e-33
cd11554	406	cd11554, SLC6sbd_u2, uncharacterized eukaryotic so	3e-27
cd11515	530	cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurot	4e-24
cd11502	543	cd11502, SLC6sbd_NTT5, Neurotransmitter transporte	7e-22
COG0733	439	COG0733, COG0733, Na+-dependent transporters of th	1e-20
cd11518	576	cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent	2e-20
cd11517	576	cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3	4e-20
cd11522	580	cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-ch	6e-20
cd11521	589	cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransm	9e-18
cd11516	581	cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral am	2e-15
cd10336	439	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfa	3e-10
cd10333	500	cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and	9e-08

>gnl|CDD|212094 cd11556, SLC6sbd_SERT-like_u1, uncharacterized subgroup of the SERT-like Na(+)- and Cl(-)-dependent monoamine transporter subfamily; solute binding domain

 Score =  329 bits (845), Expect = e-111
 Identities = 149/254 (58%), Positives = 180/254 (70%), Gaps = 39/254 (15%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
           DA++TS IN  TSF++GFVIFSVLGYMA  SG PI +VA EGPGLVF+VYP A++TMPGS
Sbjct: 299 DALVTSSINCLTSFLSGFVIFSVLGYMACRSGKPIEDVATEGPGLVFVVYPEALSTMPGS 358

Query: 63  IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASC 122
            FWSL+FF+ML+TLGLDSSFGGSEAIITALSDEFP+I  +RE+F+ CLF+ YFV+GLA C
Sbjct: 359 TFWSLLFFLMLMTLGLDSSFGGSEAIITALSDEFPIIKRHRELFVGCLFAFYFVIGLAMC 418

Query: 123 AQGGFYFFHLLDKYAAGYSILIAVLFESIA------------------------------ 152
            QGG YFFHLLD+YAAGYSILIAVLFE++A                              
Sbjct: 419 TQGGIYFFHLLDRYAAGYSILIAVLFEAVAVSWIYGLDRFCQDIKEMLGFRPGIYWKICW 478

Query: 153 ---------FIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIITP 203
                    F I YGL  Y+PL+Y+ Y YP WANVLG   A SS+ MIP +A+YQ++ TP
Sbjct: 479 KFIAPIFLLFNITYGLINYQPLTYDDYTYPTWANVLGWIFAGSSISMIPIVAIYQILNTP 538

Query: 204 GTFMQRLNTLLTPW 217
           GTF++R   L+TP 
Sbjct: 539 GTFIERKKKLVTPP 552

SERT-like Na(+)- and Cl(-)-dependent monoamine transporters, transport monoamine neurotransmitters from synaptic spaces into presynaptic neurons. Members include: the norepinephrine transporter NET, the serotonin transporter SERT , and the dopamine transporter DAT1. These latter may play a role in diseases or disorders including depression, anxiety disorders, and attention-deficit hyperactivity disorder, and in the control of human behavior and emotional states. They belongs to the solute carrier 6 (SLC6) transporter family. Members of this subgroup are uncharacterized. Length = 552

>gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine transporters, SERT, NET, DAT1 and related proteins; solute binding domain

 Score =  288 bits (740), Expect = 4e-95
 Identities = 124/255 (48%), Positives = 161/255 (63%), Gaps = 40/255 (15%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
           DA++TS IN  TSF +GFVIFSVLGYMAH   V I  VA EGPGLVFIVYP AIAT+PGS
Sbjct: 285 DALITSSINCLTSFFSGFVIFSVLGYMAHKQNVDIEVVATEGPGLVFIVYPEAIATLPGS 344

Query: 63  IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFP-LIGNNREIFIACLFSLYFVVGLAS 121
            FW++IFF+ML+TLGLDS+FGG EA+IT L DEFP ++G  RE+F+  +  + F++ L +
Sbjct: 345 TFWAIIFFLMLITLGLDSTFGGLEAVITGLCDEFPPVLGKRRELFVLGVVIICFLLALPT 404

Query: 122 CAQGGFYFFHLLDKYAAGYSILIAVLFESIA----------------------------- 152
              GG Y   LLD+YAAG SIL  V  E++A                             
Sbjct: 405 VTYGGIYVVTLLDRYAAGTSILFVVFLEAVAVSWFYGVDRFSDDIEEMLGFRPGLYWRVC 464

Query: 153 ----------FIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIIT 202
                     FI+++ L +YEPL Y+ YVYP W+ V+G  I  SS++ IP  A+Y++IIT
Sbjct: 465 WKFISPIFLLFIVIFSLVSYEPLQYQDYVYPYWSTVVGWCITCSSIVCIPIYAIYKLIIT 524

Query: 203 PGTFMQRLNTLLTPW 217
           PGTF +R+  L+TP 
Sbjct: 525 PGTFKERIVYLITPE 539

This subgroup represents the solute-binding domain of transmembrane transporters that transport monoamine neurotransmitters from synaptic spaces into presynaptic neurons. Members include: NET which transports norepinephrine, SERT which transports serotonin, and DAT1 which transports dopamine. These transporters may play a role in diseases including depression, anxiety disorders, attention-deficit hyperactivity disorder, and in the control of human behavior and emotional states. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 539

>gnl|CDD|212065 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-dependent taurine transporter TauT, and related proteins; solute-binding domain

 Score =  238 bits (609), Expect = 1e-75
 Identities = 105/258 (40%), Positives = 141/258 (54%), Gaps = 44/258 (17%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
           D+I+   +NS TSF AGF IFS+LG+MA   GVPI+EVA  GPGL FI YP A++ +P  
Sbjct: 286 DSIILCFLNSGTSFFAGFAIFSILGFMAQEQGVPISEVAESGPGLAFIAYPRAVSLLPLP 345

Query: 63  IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLI---GNNREIFIACLFSLYFVVGL 119
             W+++FF+MLL LGLDS F G E  +TA+ D +P +      REIF+A +  + F++GL
Sbjct: 346 QLWAVLFFIMLLLLGLDSQFVGVEGFVTAIVDLYPNVLRLRYRREIFVAIVCLVCFLIGL 405

Query: 120 ASCAQGGFYFFHLLDKYAA-GYSILIAVLFESIA-------------------------- 152
               +GG Y F L D YAA G  +L    FE IA                          
Sbjct: 406 PMVTEGGIYVFQLFDYYAASGICLLWLAFFECIAISWVYGADRFYDNIEDMIGYRPGPWW 465

Query: 153 -------------FIIVYGLTTYEPLSY-ESYVYPQWANVLGVAIASSSVIMIPGMAVYQ 198
                         I V+ L  Y PL+Y  +YVYP WA  +G  +A SS++ IPG A+Y 
Sbjct: 466 KYCWKFLTPAICLGIFVFSLVKYTPLTYGNTYVYPWWAEAIGWFLALSSMLCIPGYAIYI 525

Query: 199 MIITPGTFMQRLNTLLTP 216
           ++ TPG+  +RL  L TP
Sbjct: 526 LLKTPGSLKERLRKLTTP 543

This subgroup represents the solute-binding domain of TauT-like Na(+)- and Cl(-)-dependent transporters. Family members include: human TauT which transports taurine, human GAT1, GAT2, and GAT3, and BGT1, which transport gamma-aminobutyric acid (GABA), and human CT1 which transports creatine. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 543

>gnl|CDD|215790 pfam00209, SNF, Sodium:neurotransmitter symporter family

 Score =  232 bits (595), Expect = 8e-74
 Identities = 107/238 (44%), Positives = 142/238 (59%), Gaps = 40/238 (16%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
           DA++ S INS TSF+AGFVIFSVLG+MA   GVPI+EVA  GPGL FI YP A+  +P S
Sbjct: 267 DALIVSFINSATSFLAGFVIFSVLGFMAQEQGVPISEVAESGPGLAFIAYPEAVTMLPLS 326

Query: 63  IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFP-LIGNNREIFIACLFSLYFVVGLAS 121
            FWS++FF+ML+TLGLDS FGG E IITAL DEFP L+   RE+F   +  + F++GL  
Sbjct: 327 PFWSVLFFLMLITLGLDSQFGGVEGIITALVDEFPILLRKRRELFTLIVCVISFLIGLIL 386

Query: 122 CAQGGFYFFHLLDKYAAGYSILIAVLFESIA----------------------------- 152
             +GG Y F L D YAA + +L  V FE IA                             
Sbjct: 387 VTEGGIYVFTLFDYYAASFGLLFVVFFECIAVAWVYGLDRFYDDIKEMLGFRPGLFWRLC 446

Query: 153 ----------FIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMI 200
                     F+ ++ +  Y+PL+Y +YVYP WAN LG  +A SS++ IP  ++Y+++
Sbjct: 447 WKFVSPLILLFLFIFSIVQYKPLTYNNYVYPNWANALGWLMALSSMLCIPLYSIYKLL 504

Length = 506

>gnl|CDD|212082 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent serotonin transporter SERT; solute-binding domain

 Score =  218 bits (556), Expect = 8e-68
 Identities = 109/255 (42%), Positives = 149/255 (58%), Gaps = 41/255 (16%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVE-GPGLVFIVYPAAIATMPG 61
           DA++TS++N  TSF++GFVIF+VLGYMA +    + EVA + GP L+FI Y  AIA MPG
Sbjct: 282 DALVTSVVNCLTSFVSGFVIFTVLGYMAEMRNEDVIEVATDAGPSLLFITYAEAIANMPG 341

Query: 62  SIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFP-LIGNNREIFIACLFSLYFVVGLA 120
           S F+++IFF+M++TLGLDS+FGG E +ITA+ DEFP +IG  REIF+  L  + F+  LA
Sbjct: 342 STFFAIIFFLMIITLGLDSTFGGLEGVITAVLDEFPHVIGKRREIFVLGLVIVCFLGSLA 401

Query: 121 SCAQGGFYFFHLLDKYAAGYSILIAVLFESIA---------------------------- 152
           +   GG Y   LL++YA G ++L  VL E+IA                            
Sbjct: 402 TLTFGGAYVVKLLEEYATGPAVLTVVLLEAIAVSWFYGITQFCSDIKEMLGFTPGWFWRV 461

Query: 153 -----------FIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMII 201
                      FIIV  L     L    Y YP W+ V+G  I  SS+I IP  A+Y++II
Sbjct: 462 CWVAISPLFLLFIIVSFLMNPPQLRLFDYNYPYWSIVVGYCIGMSSIICIPIYALYKLII 521

Query: 202 TPGTFMQRLNTLLTP 216
           TPG+  +R+   +TP
Sbjct: 522 TPGSLKERIIKSITP 536

SERT (also called 5-HTT), is a transmembrane transporter that transports the neurotransmitter serotonin from synaptic spaces into presynaptic neurons. The antiport of a K+ ion is believed to follow the transport of serotonin and promote the reorientation of SERT for another transport cycle. Human SERT is encoded by the SLC6A4 gene. SERT is expressed in brain, peripheral nervous system, placenta, epithelium, and platelets. SERT may play a role in diseases or disorders including anxiety, depression, autism, gastrointestinal disorders, premature ejaculation, and obesity. It may also have a role in social cognition. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 537

>gnl|CDD|212081 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent norepinephrine transporter NET; solute-binding domain

 Score =  209 bits (533), Expect = 3e-64
 Identities = 109/265 (41%), Positives = 154/265 (58%), Gaps = 39/265 (14%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
           DA+LTS IN  TSFI+GF IFS+LGYMAH   V I +VA EG GLVFI+YP AI+T+ GS
Sbjct: 287 DALLTSTINCVTSFISGFAIFSILGYMAHEHKVKIEDVATEGAGLVFILYPEAISTLSGS 346

Query: 63  IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASC 122
            FW+++FF+MLLTLG+DSS GG EA+IT L+D+F ++  +R++F   +  + F++ L   
Sbjct: 347 TFWAVVFFIMLLTLGIDSSMGGMEAVITGLADDFSILKKHRKLFTFGVAFITFLLALFCI 406

Query: 123 AQGGFYFFHLLDKYAAGYSILIAVLFESIA------------------------------ 152
             GG Y   LLD +AAG SIL AVL E+I                               
Sbjct: 407 TNGGIYVLTLLDTFAAGTSILFAVLMEAIGVSWFYGVDRFSDDIQQMMGFRPGLYWRLCW 466

Query: 153 ---------FIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIITP 203
                    F+++  +  ++PL+Y+ Y +P WAN  G  IA SS++++P   +Y+    P
Sbjct: 467 KFVSPAFLLFVVIVSIINFKPLTYDDYNFPPWANRTGWGIALSSMLLVPIYVIYKFFTVP 526

Query: 204 GTFMQRLNTLLTPWRDHQTVLARSL 228
           GTF +RL   +TP  +H  V    +
Sbjct: 527 GTFEERLAYCITPENEHYLVAQGDI 551

NET (also called NAT1, NET1), is a transmembrane transporter that transports the neurotransmitter norepinephrine from synaptic spaces into presynaptic neurons. Human NET is encoded by the SLC6A2 gene. NET is expressed in brain, peripheral nervous system, adrenal gland, and placenta. NET may play a role in diseases or disorders including depression, orthostatic intolerance, anorexia nervosa, cardiovascular diseases, alcoholism, and attention-deficit hyperactivity disorder. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 560

>gnl|CDD|212083 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine transporter 1; solute-binding domain

 Score =  208 bits (531), Expect = 5e-64
 Identities = 109/260 (41%), Positives = 153/260 (58%), Gaps = 39/260 (15%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
           DAI+T+ INS TSF +GFV+FS LGYMA    VPI +VA +GPGL+FI+YP AIAT+P S
Sbjct: 286 DAIITTSINSLTSFFSGFVVFSFLGYMAQKHNVPIGDVAKDGPGLIFIIYPEAIATLPLS 345

Query: 63  IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASC 122
             W++IFF+MLLTLG+DS+ GG E++IT L DEF  +  +RE+F   +    F++ L   
Sbjct: 346 SVWAVIFFIMLLTLGIDSAMGGMESVITGLIDEFKFLHRHRELFTLFIVLSTFLISLFCV 405

Query: 123 AQGGFYFFHLLDKYAAGYSILIAVLFESIA------------------------------ 152
             GG Y F LLD +AAG SIL  VL E+I                               
Sbjct: 406 TNGGIYVFTLLDHFAAGTSILFGVLIEAIGIAWFYGVGRFSDDIEEMIGQRPGLYWRLCW 465

Query: 153 ---------FIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIITP 203
                    F++V  + T+ P  Y SY++P WAN++G  +A SS+ M+P  A+Y+    P
Sbjct: 466 KFVSPCFLLFVVVVSIVTFRPPKYGSYIFPDWANMVGWCLAISSMAMVPLYAIYKFCSLP 525

Query: 204 GTFMQRLNTLLTPWRDHQTV 223
           G+F ++L   +TP ++H+ V
Sbjct: 526 GSFREKLAYAITPEKEHELV 545

DAT1 (also called DAT), is a plasma membrane transport protein that functions at the dopaminergic synapses to transport dopamine from the extracellular space back into the presynaptic nerve terminal. Human DAT1 is encoded by the SLC6A3 gene, and is expressed in the brain. DAT1 may play a role in diseases or disorders related to dopaminergic neurons, including attention-deficit hyperactivity disorder (ADHD), Tourette syndrome, Parkinson's disease, alcoholism, drug abuse, schizophrenia, extraversion, and risky behavior. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 555

>gnl|CDD|212069 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent L-proline transporter PROT; solute-binding domain

 Score =  198 bits (506), Expect = 2e-60
 Identities = 94/257 (36%), Positives = 135/257 (52%), Gaps = 40/257 (15%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
           D ++ +L N  TS  AGF IFSVLG+MAH  GVP+ +VA  GPGL F+ YP A+  +P S
Sbjct: 285 DTLIITLGNCITSVFAGFAIFSVLGHMAHELGVPVKDVADAGPGLAFVAYPEALTLLPVS 344

Query: 63  IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFP-LIGNNREIFIACLFSLYFVVGLAS 121
            FWS++FF MLLTLGLDS F   E I+TA++DEFP L+   +  F+  +    +++GL  
Sbjct: 345 PFWSILFFFMLLTLGLDSQFAMLETIVTAVTDEFPYLLRKYKTWFLGLICVGMYLLGLLL 404

Query: 122 CAQGGFYFFHLLDKYAAGYSILIAVLFESIA----------------------------- 152
              GG Y+  L+D Y+A + +++  LF  +A                             
Sbjct: 405 VTDGGMYWLTLMDWYSASFGLMVLALFMCLAISWVYGIQRFCRDIKMMIGFEPNLYFKAC 464

Query: 153 ----------FIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIIT 202
                     FI+VY +  Y+P  Y SY YP WA +LG+ +   S +MIP  A+  ++  
Sbjct: 465 WMFISPALLLFILVYSIVKYQPSEYGSYRYPPWAELLGILMGLLSCLMIPIGAIVAILRE 524

Query: 203 PGTFMQRLNTLLTPWRD 219
            G+  +RL     P  D
Sbjct: 525 EGSLWERLKQACRPAMD 541

PROT is a high-affinity L-proline transporter that transports L-proline, and may have a role in excitatory neurotransmission. Human PROT is encoded by the SLC6A7 gene, a potential susceptible gene for asthma. PROT is expressed in the brain. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 544

>gnl|CDD|212034 cd10324, SLC6sbd, Solute carrier 6 family, neurotransmitter transporters; solute-binding domain

 Score =  193 bits (492), Expect = 2e-59
 Identities = 77/157 (49%), Positives = 104/157 (66%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
           DA++ S++N+ TS +AGFVIFSVLG++AH  GVP+ +V   GPGL F+VYP AIA MP  
Sbjct: 222 DALIVSILNTLTSLLAGFVIFSVLGFLAHELGVPVADVVKGGPGLAFVVYPEAIAKMPVP 281

Query: 63  IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASC 122
             WS++FF ML  LGLDS F   E I+TA+ DEFP +   + +    +  + F++GL   
Sbjct: 282 QLWSVLFFFMLFLLGLDSQFAIVETIVTAIVDEFPKLRKRKWLVTLGVCVVGFLLGLPYV 341

Query: 123 AQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGL 159
            QGG Y   LLD YAA +S+L+  LFE IA   +YG+
Sbjct: 342 TQGGIYILDLLDYYAATFSLLVLALFELIAISWIYGV 378

This family represents the solute-binding domain of SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family). These use sodium and chloride electrochemical gradients to catalyze the thermodynamically uphill movement of a variety of substrates, and include neurotransmitter transporters (NTTs). The latter are Na+/Cl--dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. NTTs are widely expressed in the mammalian brain, and are involved in regulating neurotransmitter signaling and homeostasis, through facilitating the uptake of released neurotransmitters from the extracellular space into neurons and glial cells. NTTs are the target of a range of therapeutic drugs for the treatment of psychiatric diseases, such as major depression, anxiety disorders, attention deficit hyperactivity disorder and epilepsy. In addition, they are the primary targets of cocaine, amphetamines and other psychostimulants. This family also includes Drosophila Blot which is expressed primarily in epithelial tissues of ectodermal origin and in the nervous system of the embryo and larvae, but in addition found in the developing oocyte and the freshly laid egg. A lack or reduction of Blot function during oogenesis results in early arrest of embryonic development. 12 transmembrane helices (TMs) appears to be common for eukaryotic and some prokaryotic and archaeal SLC6s, (a core inverted topology repeat, TM1-5 and TM6-10, plus TMs11-12; TMs numbered to conform to the SLC6 Aquifex aeolicus LeuT), although a majority of bacterial, and some archaeal SLC6s lack TM12, for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1. Length = 417

>gnl|CDD|212079 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent taurine transporter; solute-binding domain

 Score =  185 bits (472), Expect = 2e-55
 Identities = 105/258 (40%), Positives = 138/258 (53%), Gaps = 44/258 (17%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
           D +L   +NS TSF++GF IFSVLG+MA   GV I +VA  GPGL FI YP A+  MP  
Sbjct: 285 DCMLLGCLNSGTSFVSGFAIFSVLGFMAQEQGVDIADVAESGPGLAFIAYPKAVTMMPLP 344

Query: 63  IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLI---GNNREIFIACLFSLYFVVGL 119
            FW+++FF+MLL LGLDS F   E  IT+L D +P     G  REIFIA +  + +++GL
Sbjct: 345 TFWAILFFIMLLLLGLDSQFVEVEGQITSLVDLYPSFLRKGYRREIFIAIVCFISYLLGL 404

Query: 120 ASCAQGGFYFFHLLDKYAA-GYSILIAVLFESIAFIIVYG-------------------- 158
               +GG Y F L D YAA G  +L    FE IA   VYG                    
Sbjct: 405 TMVTEGGMYVFQLFDYYAASGVCLLWVAFFECIAVAWVYGADNFYDAIEDMIGYRPGPWM 464

Query: 159 -------------------LTTYEPLSY-ESYVYPQWANVLGVAIASSSVIMIPGMAVYQ 198
                              L  Y+PL+Y + YVYP+WA  LG  +A SS+I IP + V +
Sbjct: 465 KWSWIVITPVLCVGCFIFSLVKYKPLTYNKVYVYPEWAIGLGWVLALSSMICIPMVVVIR 524

Query: 199 MIITPGTFMQRLNTLLTP 216
           +I + G  ++R+  L TP
Sbjct: 525 IIQSDGPLIERIKALATP 542

TauT is a Na(+)- and Cl(-)-dependent, high-affinity, low-capacity transporter of taurine and beta-alanine. Human TauT is encoded by the SLC6A6 gene. TauT is expressed in brain, retina, liver, kidney, heart, spleen, and pancreas. It may play a part in the supply of taurine to the intestinal epithelium and in the between-meal-capture of taurine. It may also participate in re-absorbing taurine that has been deconjugated from bile acids in the distal lumen. Functional TauT protects kidney cells from nephrotoxicity caused by the chemotherapeutic agent cisplatin; cisplatin down-regulates TauT in a p53-dependent manner. In mice, TauT has been shown to be important for the maintenance of skeletal muscle function and total exercise capacity. TauT-/- mice develop additional clinically important diseases, some of which are characterized by apoptosis, including vision loss, olfactory dysfunction, and chronic liver disease. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 542

>gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine transporter GlyT2; solute-binding domain

 Score =  183 bits (466), Expect = 4e-54
 Identities = 101/264 (38%), Positives = 145/264 (54%), Gaps = 40/264 (15%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
           D ++ +  NS TS  AGFVIFSV+G+MAH   V I  VA +GPG+ F+VYP A+  +P S
Sbjct: 311 DTLIVTCTNSATSIFAGFVIFSVIGFMAHELKVNIESVADQGPGIAFVVYPEALTRLPLS 370

Query: 63  IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFP-LIGNNREIFIACLFSLYFVVGLAS 121
            FW++IFF+MLLTLGLD+ F   E I+T++SDEFP  +  ++ +F       +F++G   
Sbjct: 371 PFWAIIFFLMLLTLGLDTMFATIETIVTSVSDEFPKYLRTHKPLFTLVCCISFFIMGFPM 430

Query: 122 CAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTY------------------- 162
             QGG Y   L+D YAA YS++I  +FE +    +YGL  +                   
Sbjct: 431 ITQGGMYMLQLVDTYAASYSLVIIAIFELVGISYIYGLQRFCEDIEMMIGFQPNKFWRVC 490

Query: 163 --------------------EPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIIT 202
                               EP++Y SY YP W+ VLG  + + SVI IP M V +M + 
Sbjct: 491 WAFVTPTILTFILCFSFYQWEPMTYGSYHYPNWSMVLGWLMLACSVIWIPIMFVIKMHLA 550

Query: 203 PGTFMQRLNTLLTPWRDHQTVLAR 226
           PG+F++RL  + +P  D    LA+
Sbjct: 551 PGSFIERLKLVCSPQPDWGPFLAK 574

GlyT2 (also called NET1) is a membrane-bound transporter that re-uptakes glycine from the synaptic cleft. Human GlyT2 is encoded by the SLC6A5 gene. GlyT2 is expressed in brain and spinal cord. GlyT2 may play a role in pain, and in spasticity. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 606

>gnl|CDD|212075 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent GABA transporter 1; solute-binding domain

 Score =  177 bits (451), Expect = 4e-52
 Identities = 100/258 (38%), Positives = 142/258 (55%), Gaps = 41/258 (15%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
           D+I+   INSCTS  AGFVIFS++G+MAH++  PI +VA  GPGL F+ YP A+  +P S
Sbjct: 318 DSIIVCCINSCTSMFAGFVIFSIVGFMAHVTKRPIADVAASGPGLAFLAYPEAVTQLPIS 377

Query: 63  IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFP-LIGNNREIFIACLFSLYFVVGLAS 121
             W+++FF MLL LG+DS F   E  ITAL DEFP L+ N REIFIA +  + +++GL++
Sbjct: 378 PLWAVLFFSMLLMLGIDSQFCTVEGFITALVDEFPRLLRNRREIFIAVVCIVSYLIGLSN 437

Query: 122 CAQGGFYFFHLLDKY-AAGYSILIAVLFESIAFIIVYGLTTY------------------ 162
             QGG Y F L D Y A+G S+L  V FE ++    YG+  +                  
Sbjct: 438 ITQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFYGVNRFYDNIEEMVGYRPCIWWKL 497

Query: 163 ---------------------EPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMII 201
                                 PL+  +YV+P+W   +G  +A SS+++IPG   Y  + 
Sbjct: 498 CWSFFTPIIVAGVFLFSAVQMTPLTMGNYVFPKWGQGVGWFMALSSMVLIPGYMAYMFLT 557

Query: 202 TPGTFMQRLNTLLTPWRD 219
             G+  QRL  ++ P  D
Sbjct: 558 LKGSLKQRLQVMIQPTED 575

GAT1 transports gamma-aminobutyric acid (GABA). GABA is the main inhibitory neurotransmitter within the mammalian CNS. Human GAT1 is encoded by the SLC6A1 gene. GAT1 is expressed in brain and peripheral nervous system. The antiepileptic drug, Tiagabine, inhibits GAT1. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 598

>gnl|CDD|212070 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent beta-alanine transporter ATB0+; solute-binding domain

 Score =  175 bits (445), Expect = 4e-51
 Identities = 93/257 (36%), Positives = 126/257 (49%), Gaps = 43/257 (16%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
           DAI+  + N  TS  AGF IFSVLG+MAH+   P++EV   G  L FI YP A+A +P S
Sbjct: 306 DAIVVCVTNCLTSVFAGFAIFSVLGHMAHVLKKPVSEVVDSGFDLAFIAYPEALAKLPIS 365

Query: 63  IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIAC-LFSLYFVVGLAS 121
             WS++FF MLLTLGLDS F G E I T + D FP +   + I I   +  + F++GL  
Sbjct: 366 PLWSILFFFMLLTLGLDSQFAGIETITTTIQDAFPKVMKKKRIPITLGVCIILFLLGLPC 425

Query: 122 CAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYG----------------------- 158
             Q G Y+ +L+D + AG+ IL A + E I  I +YG                       
Sbjct: 426 VTQAGIYWVNLIDHFCAGWGILFAAVLELIGIIWIYGGNRFIEDIEMMIGKKSWIFWLWW 485

Query: 159 -------------------LTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQM 199
                              L T+   +Y S  YP W   LG  + +  +I IP +AVY++
Sbjct: 486 RACWFFITPVLLIAILIWSLVTFHSPTYGSVPYPDWGTALGWCMIAFCLIWIPIVAVYKI 545

Query: 200 IITPGTFMQRLNTLLTP 216
           I   G   QRL +   P
Sbjct: 546 IKAKGNIFQRLKSCCRP 562

ATB0+ (also known as the beta-alanine carrier) is a transmembrane transporter with a broad substrate specificity; it can transport non-alpha-amino acids such as beta-alanine with low affinity, and can transport dipolar and cationic amino acids such as leucine and lysine, with a higher affinity. It may have a role in the absorption of essential nutrients and drugs in the distal regions of the human gastrointestinal tract. Human ATB0+ is encoded by the SLC6A14 gene. ATB0+ is expressed in the lung, trachea, salivary gland, mammary gland, stomach, and pituitary gland. ATB0+ may play a role in obesity, and its upregulation may have a pathogenic role in colorectal cancer. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 601

>gnl|CDD|212076 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent GABA transporter 2; solute-binding domain

 Score =  170 bits (433), Expect = 8e-50
 Identities = 99/261 (37%), Positives = 139/261 (53%), Gaps = 44/261 (16%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
           D I    +NS TSF+AGF IFS+LG+MA+  GVPI+EVA  GPGL FI YP A++ MP S
Sbjct: 282 DCIALCFLNSGTSFVAGFAIFSILGFMAYEQGVPISEVAESGPGLAFIAYPRAVSMMPFS 341

Query: 63  IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLI---GNNREIFIACLFSLYFVVGL 119
             W+  FF+M++ LGLDS F   E+++TA+ D +P +    N RE+ I  +  + F+VGL
Sbjct: 342 PLWACFFFIMIVLLGLDSQFVCVESLVTAMVDMYPEVFRKKNRRELLILFVSIVSFLVGL 401

Query: 120 ASCAQGGFYFFHLLDKYAA-GYSILIAVLFESIAFIIVYG-------------------- 158
               +GG Y F L D YAA G  +L   +FE++    VYG                    
Sbjct: 402 IMLTEGGMYVFQLFDYYAASGMCLLFVAIFETLCIAWVYGADRFYDNIEDMIGYRPGPYI 461

Query: 159 -------------------LTTYEPLSY-ESYVYPQWANVLGVAIASSSVIMIPGMAVYQ 198
                              L  Y PL Y + YVYP W + +G  +A SS++ IP   +Y+
Sbjct: 462 KYCWLFITPAVCVATFLFSLIKYTPLKYNKEYVYPWWGDAIGWLLALSSMVCIPLWIIYK 521

Query: 199 MIITPGTFMQRLNTLLTPWRD 219
           +  T G+  +R++ LL P  D
Sbjct: 522 LSTTKGSLRERIHQLLCPSPD 542

This family includes human GAT2 (hGAT2) which transports gamma-aminobutyric acid (GABA). GABA is the main inhibitory neurotransmitter within the mammalian CNS. hGAT2 is encoded by the SLC6A13 gene, and is similar to mouse GAT-3, and rat GAT2. hGAT2 is expressed in brain, kidney, lung, and testis. hGAT2 is a potential drug target for treatment of epilepsy. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 544

>gnl|CDD|212078 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent creatine transporter 1; solute-binding domain

 Score =  168 bits (428), Expect = 8e-49
 Identities = 102/264 (38%), Positives = 136/264 (51%), Gaps = 45/264 (17%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
           DA + +LINS TSF AGFV+FSVLG+MA   GV I++VA  GPGL FI YP A+  MP +
Sbjct: 297 DAFILALINSGTSFFAGFVVFSVLGFMASEQGVDISKVAESGPGLAFIAYPKAVTLMPVA 356

Query: 63  IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGN---NREIFIACLFSLYFVVGL 119
             W+ +FF MLL LGLDS F G E  IT + D FP        REI  A    L F++ L
Sbjct: 357 PLWAALFFFMLLLLGLDSQFVGVEGFITGILDLFPQKYYGRLRREITAALCCLLCFLIDL 416

Query: 120 ASCAQGGFYFFHLLDKY-AAGYSILIAVLFESIAFIIVYG-------------------- 158
           +   QGG Y F L D Y A+G ++L    +E +    VYG                    
Sbjct: 417 SMVTQGGMYVFQLFDYYSASGITLLWQAFWECVVIAWVYGADRFMDDIARMIGYRPLPWM 476

Query: 159 -------------------LTTYEPLSY-ESYVYPQWANVLGVAIASSSVIMIPGMAVYQ 198
                              +  Y+PL+Y ++YVYP W   +G A+A SS++ IP   +Y+
Sbjct: 477 KWCWSVITPLVCVGIFLFHVVNYKPLTYNKTYVYPWWGEAIGWALALSSMLCIPLTVLYK 536

Query: 199 MIITPGTFMQRLNTLLTP-WRDHQ 221
           ++   G+F +R   L TP W  H 
Sbjct: 537 LLRAKGSFRERWQLLTTPVWGHHH 560

CT1 (also called CRTR, CRT) transports creatine. Human CT1 is encoded by the SLC6A8 gene. CT1 is ubiquitously expressed, with highest levels found in skeletal muscle and kidney. Creatine is absorbed from food or synthesized from arginine and plays an important role in energy metabolism. Deficiency in human CT1 leads to X-linked cerebral creatine transporter deficiency. In males, this disorder is characterized by language and speech delays, autistic-like behavior, seizures in about 50% of cases, and can also involve midfacial hypoplasia, and short stature. In females, it is characterized by mild cognitive impairment with behavior and learning problems. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 592

>gnl|CDD|212080 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent betaine/GABA transporter-1, and related proteins; solute-binding domain

 Score =  165 bits (420), Expect = 5e-48
 Identities = 104/258 (40%), Positives = 136/258 (52%), Gaps = 44/258 (17%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
           D I+   +NS TSF+AGF IFSVLG+MA   GVPI+EVA  GPGL FI YP A+  MP S
Sbjct: 284 DCIMLCFLNSATSFVAGFAIFSVLGFMAREQGVPISEVAESGPGLAFIAYPTAVTMMPVS 343

Query: 63  IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLI---GNNREIFIACLFSLYFVVGL 119
             WS +FF+ML+ LGLDS F   E+++TA  D FP +      RE+ I  +  + +++GL
Sbjct: 344 QLWSCLFFLMLIFLGLDSQFVCVESMVTASIDMFPGVFRKKGRRELLILAIAVICYLLGL 403

Query: 120 ASCAQGGFYFFHLLDKYAA-GYSILIAVLFESIAFIIVYG-------------------- 158
               +GG Y F L D YAA G  +L   +FE I    VYG                    
Sbjct: 404 LLVTEGGMYIFQLFDYYAASGTCLLFLAIFEVICIGWVYGANRFYDNIEDMIGYRPWPLI 463

Query: 159 -------------------LTTYEPLSY-ESYVYPQWANVLGVAIASSSVIMIPGMAVYQ 198
                              L  Y PL Y  SYVYP W  VLG  +A SS++ IP  A++ 
Sbjct: 464 KICWLVFTPGLCLAVFLFSLIKYTPLKYNNSYVYPPWGYVLGWLMALSSMVCIPLYAIFI 523

Query: 199 MIITPGTFMQRLNTLLTP 216
           ++ T G+  QRL  L++P
Sbjct: 524 LLKTKGSLKQRLMQLISP 541

BGT1 is a relatively low-affinity transporter of gamma-aminobutyric acid (GABA), and can also transport betaine. GABA is the main inhibitory neurotransmitter within the mammalian CNS. Human BGT1 is encoded by the SLC6A12 gene, and is similar to mouse GAT2. Mouse GAT2 plays a role in transporting GABA across the blood-brain barrier. In addition to being expressed in cells of the central nervous system, BGT1 is expressed in peripheral tissues, including kidney, liver, and heart. An association has been shown between the SLC6A12 gene and the occurrence of aspirin-intolerant asthma, and BGT1 is a drug target for antiepileptic drugs. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 541

>gnl|CDD|212077 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent GABA transporter 3; solute-binding domain

 Score =  164 bits (415), Expect = 3e-47
 Identities = 103/258 (39%), Positives = 133/258 (51%), Gaps = 44/258 (17%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
           D I+   +NS TSF+AGF IFSVLG+MA+  GVPI EVA  GPGL FI YP A+  MP S
Sbjct: 285 DCIMLCCLNSGTSFVAGFAIFSVLGFMAYEQGVPIAEVAESGPGLAFIAYPKAVTMMPLS 344

Query: 63  IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLI---GNNREIFIACLFSLYFVVGL 119
             W+ +FFMML+ LGLDS F   E+++TA+ D +P +   G  RE+ I  L  + + +GL
Sbjct: 345 PLWATLFFMMLIFLGLDSQFVCVESLVTAVVDMYPKVFRRGYRRELLILALSIVSYFLGL 404

Query: 120 ASCAQGGFYFFHLLDKYAA-GYSILIAVLFESIAFIIVYG-------------------- 158
               +GG Y F L D YAA G  +L   +FE I    VYG                    
Sbjct: 405 VMLTEGGMYIFQLFDSYAASGMCLLFVAIFECICIGWVYGSNRFYDNIEDMIGYRPLSLI 464

Query: 159 -------------------LTTYEPLSYES-YVYPQWANVLGVAIASSSVIMIPGMAVYQ 198
                              L  Y+PL Y + Y YP W   +G  +A SS+I IP     +
Sbjct: 465 KWCWMVITPGICAGIFIFFLVKYKPLKYNNVYTYPDWGYGIGWLMALSSMICIPLWICIK 524

Query: 199 MIITPGTFMQRLNTLLTP 216
           M  T GTF ++L  L TP
Sbjct: 525 MWKTEGTFPEKLQKLTTP 542

This family includes human GAT3 (hGAT3) a high-affinity transporter of gamma-aminobutyric acid (GABA). GABA is the main inhibitory neurotransmitter within the mammalian CNS. hGAT3 is encoded by the SLC6A11 gene, and is similar to mouse GAT4, and rat GAT3/GATB. GAT3 is expressed primarily in the glia of the brain, and is a potential drug target for antiepileptic drugs. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 542

>gnl|CDD|212067 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain

 Score =  150 bits (379), Expect = 8e-42
 Identities = 95/262 (36%), Positives = 140/262 (53%), Gaps = 48/262 (18%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
           D+I+ S+ N  TS  AGFVIFS+LG+MA+  GV ++EVA  GPGL F+ YP A+  +P S
Sbjct: 313 DSIIISITNCATSVYAGFVIFSILGFMANHLGVDVSEVADHGPGLAFVAYPEALTLLPIS 372

Query: 63  IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLY-----FVV 117
             WSL+FF ML+ LGL + F   E ++TA+ DE   IGN+  I      +L      F++
Sbjct: 373 PLWSLLFFFMLILLGLGTQFCLLETLVTAVVDE---IGNDWIIRNKTYVTLGVAIIGFLL 429

Query: 118 GLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIA------------------------- 152
           G+    Q G Y+  L+D YAA +S++I      IA                         
Sbjct: 430 GIPLTTQAGIYWLLLMDNYAASFSLVIISCIMCIAIMYIYGHRNYFKDIEMMLGFPPPLF 489

Query: 153 --------------FIIVYGLTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQ 198
                         FI+++ +  Y P++Y  YVYP WA V+G  +A SSVI IP  A+++
Sbjct: 490 FQICWRFVSPAIIFFILIFTVIQYRPITYNDYVYPGWAIVIGFLMALSSVICIPIYAIFK 549

Query: 199 MIITPG-TFMQRLNTLLTPWRD 219
           + ++ G TF++RL   + P +D
Sbjct: 550 ICMSEGDTFLERLKNAVKPSKD 571

GlyT1 is a membrane-bound transporter that re-uptakes glycine from the synaptic cleft. Human GlyT1 is encoded by the SLC6A9 gene. GlyT1 is expressed in brain, pancreas, uterus, stomach, spleen, liver, and retina. GlyT1 may play a role in schizophrenia. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 585

>gnl|CDD|212040 cd10332, SLC6sbd-B0AT-like, System B(0) neutral amino acid transporter AT1, 2 and 3, and related proteins; solute-binding domain

 Score =  135 bits (342), Expect = 1e-36
 Identities = 84/295 (28%), Positives = 116/295 (39%), Gaps = 99/295 (33%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMA-------------------------------- 30
           DA+L SLIN  TS  A  V+FSVLG+ A                                
Sbjct: 271 DAVLVSLINCFTSIFASIVVFSVLGFKATTRYDRCVDSNILILVINFLLNSTEDYVDNYT 330

Query: 31  HISGVPINEV----------------AVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLL 74
            I+ V + E                 AVEG GL FIV+  AI   PG+ FWS++FF+MLL
Sbjct: 331 AINNVTLTENQTLGLTNCSLEDELDEAVEGTGLAFIVFTEAIVKFPGAPFWSVLFFLMLL 390

Query: 75  TLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLD 134
           TLGL S FG  E ++T L D   L    +E     +  + F++GL    + G Y+  + D
Sbjct: 391 TLGLGSMFGTLEGVLTPLFDSKILPKVPKEYLTGLVCLVCFLIGLIFTQRSGNYWVQMFD 450

Query: 135 KYAAGYSILIAVLFESIAFIIVYGLTTYE------------------------------- 163
            Y+    +LI  LFE IA   VYGL  +E                               
Sbjct: 451 SYSGTLPLLIIALFEMIAVSYVYGLDRFEDDIEYMTGKRPGWYWKITWRYVSPLAMLVIL 510

Query: 164 ----------PLSY----------ESYVYPQWANVLGVAIASSSVIMIPGMAVYQ 198
                     P +Y          ES  YP W   + + +   S++ IP +A+ +
Sbjct: 511 VASIVQLVTKPPTYSAWNAELASTESLPYPGWGLAVIILLILLSILPIPVVALLR 565

This subgroup includes the solute-binding domain of transmembrane transporters, which transport, i) neutral amino acids: NTT4 (also called XT1), SBAT1 (also called B0AT2, v7-3, NTT7-3), and B0AT1 (also called HND); the human genes encoding these are SLC6A17, SLC6A15, and SLC6A19 respectively, ii) glycine: B0AT3 (also called Xtrp2, XT2), iii) imino acids, such as proline, pipecolate, MeAIB, and sarcosine: SIT1 (also called XTRP3, XT3, IMINO). The human genes encoding B0AT3 and SIT1 are SLC6A18 and SLC6A20 respectively. Transporters in this subgroup may play a role in disorders including major depression, Hartnup disorder, increased susceptibility to myocardial infarction, and iminoglycinuria. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 565

>gnl|CDD|212042 cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute carrier 6 subfamily; solute-binding domain

 Score =  125 bits (316), Expect = 3e-33
 Identities = 55/159 (34%), Positives = 86/159 (54%), Gaps = 6/159 (3%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMP-- 60
           +A++ +  NS    +AG  +FS+LG+MA   GVP++EV   G GL F+ +P AI  MP  
Sbjct: 252 NALIVAFANSSFEILAGIGVFSILGFMAQAQGVPVSEVVSSGIGLAFVAFPKAINLMPPG 311

Query: 61  GSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLA 120
           G++F  ++FF+ L+  GL S     E +I+AL D+F  +   + + I CL    F+V L 
Sbjct: 312 GALF-GVLFFLSLVFAGLTSLISLVEVVISALQDKFG-LSRKKAVTIVCLVG--FLVSLL 367

Query: 121 SCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGL 159
                G Y   ++D +   Y I++  L E I    V+G 
Sbjct: 368 FATGAGLYLLDIVDHFINNYGIVLVGLVEVIVVGWVFGA 406

SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. Length = 480

>gnl|CDD|212092 cd11554, SLC6sbd_u2, uncharacterized eukaryotic solute carrier 6 subfamily; solute-binding domain

 Score =  107 bits (270), Expect = 3e-27
 Identities = 50/158 (31%), Positives = 82/158 (51%), Gaps = 2/158 (1%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
           DA++ +  NS    IAGF +F ++GY+    GV     A+ G  L F+ YP AIA MPGS
Sbjct: 219 DALIIAGSNSLFEIIAGFAVFGIVGYLGMTPGV--EGEALGGFVLGFVTYPEAIAQMPGS 276

Query: 63  IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASC 122
            F++++FF+ L  LG+ S+F   EA++T + D        R      +  + F++ L  C
Sbjct: 277 NFFAVLFFLTLFLLGISSAFALLEAVVTLICDSGWGRKVKRWWIATVVCFVSFLLSLPYC 336

Query: 123 AQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLT 160
            + G+Y    +D + +  +++  V  E +A   VY   
Sbjct: 337 TRFGYYLLDAVDAWISNVALVFVVWAECVAATTVYRFE 374

SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, and are involved in regulating neurotransmitter signaling and homeostasis, and are the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. Length = 406

>gnl|CDD|212084 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurotransmitter transporter 4, and related proteins; solute-binding domain

 Score =   99 bits (249), Expect = 4e-24
 Identities = 66/176 (37%), Positives = 95/176 (53%), Gaps = 21/176 (11%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGY-----------MAHISGVPINE---VAVEGPGLV 48
           DA+L S IN  TS +A  V+F+VLG+              +    I +    AV+G GL 
Sbjct: 273 DAVLVSFINFFTSVLATLVVFAVLGFKIQKVKEEEFSALGLDSCLIEDELDKAVQGTGLA 332

Query: 49  FIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIF-- 106
           FI +  A+   P S FWS++FF+ML+ LGL S FG  E I T + D F +    +EI   
Sbjct: 333 FIAFTEAMTHFPASPFWSVMFFLMLVNLGLGSMFGTIEGITTPIVDTFKV---RKEILTV 389

Query: 107 IACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTY 162
           I CLF+  F++GL    + G YF  + D Y+A   +LI V+ E+IA   +YG+  +
Sbjct: 390 ICCLFA--FLIGLIFVQRSGNYFVTMFDDYSATLPLLIVVILENIAVAWIYGIKKF 443

This subgroup includes the solute-binding domain of NTT4 (also called XT1) and SBAT1 (also called B0AT2, v7-3, NTT7-3); both these proteins can transport neutral amino acids. Human SBAT1 is encoded by the SLC6A15 gene, a susceptibility gene for major depression. SBAT1 is expressed in brain, and may have a role in transporting neurotransmitter precursors into neurons. Human NTT4 is encoded by the SLC6A17 gene. NTT4 is specifically expressed in the nervous system, in synaptic vesicles of glutamatergic and GABAergic neurons, and may play an important role in synaptic transmission. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 530

>gnl|CDD|212071 cd11502, SLC6sbd_NTT5, Neurotransmitter transporter 5; solute-binding domain

 Score = 93.6 bits (233), Expect = 7e-22
 Identities = 58/192 (30%), Positives = 83/192 (43%), Gaps = 36/192 (18%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVE------------------- 43
           DA + +L+N  TS IA  + F+V+G+ A +S     E  VE                   
Sbjct: 269 DAFVVALVNLLTSLIATPIFFAVMGFWATVSTHRCCEKNVENLLMLGVLPPEAKPPADLS 328

Query: 44  -----------------GPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSE 86
                            GPG  F+ +  AI+  PGS FW+++FF+ LL  GL + FG  +
Sbjct: 329 LDPASIYLLWLFNLPMEGPGFAFLAFSEAISLAPGSAFWAIVFFLALLLAGLSTMFGIMQ 388

Query: 87  AIITALSDEFPLIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAV 146
            I T L D F     + ++    +    F+ GL      G YF  LLD Y     I+  V
Sbjct: 389 GIYTPLQDTFSFFRKHPKLLTVLVCVGLFLGGLVFTQPSGSYFRSLLDDYLVPLPIIFIV 448

Query: 147 LFESIAFIIVYG 158
           +FE+IA    YG
Sbjct: 449 VFENIALAWAYG 460

Human NTT5 is encoded by the SLC6A16 gene. NTT5 is expressed in testis, pancreas, and prostate; its expression is predominantly intracellular, indicative of a vesicular location. Its substrates are unknown. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 543

>gnl|CDD|223805 COG0733, COG0733, Na+-dependent transporters of the SNF family [General function prediction only]

 Score = 89.6 bits (223), Expect = 1e-20
 Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 11/157 (7%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
            A+   L+N+  S +AG VIF  L      +         +GPGLVFIV PA    MP  
Sbjct: 250 SALSIVLLNTLISLLAGLVIFPALFSFGADAS--------QGPGLVFIVLPAVFNQMPLG 301

Query: 63  IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASC 122
             + ++FF++LL   L S+    E ++ AL D+F   G +R+     +  L F++G+ S 
Sbjct: 302 TLFGILFFLLLLFAALTSAISMLEVLVAALIDKF---GISRKKATWLIGILIFLLGIPSI 358

Query: 123 AQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGL 159
              G   F L+D   +   + +  L  +I    V   
Sbjct: 359 LSFGLSIFDLVDFVVSNILMPLGALLIAIFVGWVLKK 395

Length = 439

>gnl|CDD|212087 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent imino acid transporter SIT1; solute-binding domain

 Score = 89.1 bits (221), Expect = 2e-20
 Identities = 51/129 (39%), Positives = 76/129 (58%), Gaps = 7/129 (5%)

Query: 39  EVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPL 98
           + AV+G GL FIVY  AI  M  S  WS+++F MLL LG+ S  G + AI+T L+D   +
Sbjct: 364 DTAVQGTGLAFIVYSEAIKNMEVSQLWSVLYFFMLLMLGIGSMLGNTAAILTPLTD-SKI 422

Query: 99  IGNN--REIF--IACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFI 154
           I ++  +E    + C  +   ++GL    + G Y+F + + YAA  S+L+ VL E+IA  
Sbjct: 423 ISSHLPKEAISGLVCFINC--IIGLVFTMEAGNYWFDIFNDYAATLSLLLIVLVETIAVC 480

Query: 155 IVYGLTTYE 163
            VYGL  +E
Sbjct: 481 YVYGLRRFE 489

SIT1 (also called XTRP3, XT3, IMINO) transports imino acids, such as proline, pipecolate, MeAIB, and sarcosine. It has weak affinity for neutral amino acids such as phenylalanine. Human SIT1 is encoded by the SLC6A20 gene. SIT1 is expressed in brain, kidney, small intestine, thymus, spleen, ovary, and lung. SLC6A20 is a candidate gene for the rare disorder iminoglycinuria. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 576

>gnl|CDD|212086 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3; solute-binding domain

 Score = 88.7 bits (220), Expect = 4e-20
 Identities = 73/307 (23%), Positives = 115/307 (37%), Gaps = 111/307 (36%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMA-------------------------------- 30
           DA+  +L+NS TS  A   +FSVLG+ A                                
Sbjct: 272 DAVTIALVNSMTSLYASIPVFSVLGFKATNDYEHCLDRNILSLINEFDFPEQSISRDNYP 331

Query: 31  ------------HISGVPIN--------EVAVEGPGLVFIVYPAAIATMPGSIFWSLIFF 70
                        ++ +P+         + +  GPGL FIV+  A+  MPG+  W+++FF
Sbjct: 332 SVLMHLNATWPERVAQLPLKACLLEDFLDKSASGPGLAFIVFTEAVLHMPGAQVWAVLFF 391

Query: 71  MMLLTLGLDSSFGGSEAIITALSDEFPLI-GNNREIF--IACLFSLYFVVGLASCAQGGF 127
            ML TLGL S FG  E +IT L D   L     +E    + CL    F+  L    Q G 
Sbjct: 392 GMLFTLGLSSMFGNVEGVITPLLDVGVLPRWVPKEALTGLVCLVC--FLSALCFTLQSGN 449

Query: 128 YFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTTY------------------------- 162
           Y+  + D +AA  ++L+   FE +  + VYG+  +                         
Sbjct: 450 YWLEIFDSFAASLNLLVIAFFEVVGVVYVYGIKRFCDDIEWMTGRRPSLYWRLTWRVVSP 509

Query: 163 ----------------EPLSY-------------ESYVYPQWANVLGVAIASSSVIMIPG 193
                           +P SY             E  +YP W   + V ++   V+ +P 
Sbjct: 510 LLLLTIFVAYIILLFQKPPSYKAWNPKYELFPSREEKLYPGWVQAICVLLSLLPVLWVPV 569

Query: 194 MAVYQMI 200
           +A+ Q++
Sbjct: 570 VALAQLL 576

B0AT3 (also called Xtrp2, XT2) transports glycine. Human B0AT3 is encoded by the SLC6A18 gene. B0AT3 is expressed in the kidney. Mutations in the SLC6A18 gene may contribute to the autosomal recessive disorder iminoglycinuria and its related disorder hyperglycinuria. SLC6A18 or its neighboring genes are associated with increased susceptibility to myocardial infarction. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 576

>gnl|CDD|212091 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-chain amino-acid transporter 1; solute-binding domain

 Score = 88.4 bits (219), Expect = 6e-20
 Identities = 50/122 (40%), Positives = 69/122 (56%), Gaps = 3/122 (2%)

Query: 41  AVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIG 100
           AV+G GL FI +  A+   P S FWS++FF+ML+ LGL S FG  E IIT + D F +  
Sbjct: 375 AVQGTGLAFIAFTEAMTHFPASPFWSVMFFLMLVNLGLGSMFGTIEGIITPIVDTFKV-- 432

Query: 101 NNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLT 160
             +EI       L F +GL    + G YF  + D Y+A   +LI V+ E+IA   VYG+ 
Sbjct: 433 -RKEILTVICCLLAFCIGLIFVQRSGNYFVTMFDDYSATLPLLIVVILENIAVSFVYGID 491

Query: 161 TY 162
            +
Sbjct: 492 KF 493

SBAT1 (also called B0AT2, v7-3, NTT7-3) is a high-affinity Na(+)-dependent transporter for large neutral amino acids, including leucine, isoleucine, valine, proline and methionine. Human SBAT1 is encoded by the SLC6A15 gene, a susceptibility gene for major depression. SBAT1 is expressed in brain, and may have a role in transporting neurotransmitter precursors into neurons. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 580

>gnl|CDD|212090 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransmitter transporter 4; solute-binding domain

 Score = 81.9 bits (202), Expect = 9e-18
 Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 21/173 (12%)

Query: 41  AVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIG 100
           +V+G GL FI +  A+   P S FWS++FF+ML+ LGL S  G    I T + D F +  
Sbjct: 375 SVQGTGLAFIAFTEAMTHFPASPFWSVMFFLMLINLGLGSMIGTMSGITTPIIDTFKV-- 432

Query: 101 NNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYG-- 158
             +E+F        F+VGL    + G YF  + D Y+A   + I V+ E+IA   +YG  
Sbjct: 433 -RKEVFTVGCCIFAFLVGLIFVQRSGNYFVTMFDDYSATLPLTIVVILENIAVAWIYGTK 491

Query: 159 --------LTTYEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIITP 203
                   +  + P S+  Y +   + +    + ++S+I        Q+ ++P
Sbjct: 492 KFMQELTEMLGFRPYSFYFYTWKYVSPICMAVLMTASII--------QLGVSP 536

NTT4 (also called XT1) transports the neutral amino acids, proline, glycine, leucine, and alanine, and may play an important role in synaptic transmission. Human NTT4 is encoded by the SLC6A17 gene. NTT4 is specifically expressed in the nervous system, in synaptic vesicles of glutamatergic and GABAergic neurons. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 589

>gnl|CDD|212085 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral amino acids transporter, B0AT1; solute-binding domain

 Score = 74.9 bits (184), Expect = 2e-15
 Identities = 45/125 (36%), Positives = 63/125 (50%), Gaps = 11/125 (8%)

Query: 41  AVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSD------ 94
            VEG GL FIV+  AI  MP S  WS++FF+ML  LGL S FG  E ++  L D      
Sbjct: 361 GVEGTGLAFIVFTEAITKMPLSPLWSVLFFIMLFCLGLSSMFGNMEGVLVPLQDLKVIPK 420

Query: 95  EFPLIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFI 154
            +P     +EI    +  + F++GL      G Y+  L D +A    +LI    E  + +
Sbjct: 421 SWP-----KEIITGLICLVSFLIGLIFVLGSGNYWLALFDSFAGSIPLLIIAFCEMFSVV 475

Query: 155 IVYGL 159
            VYG+
Sbjct: 476 YVYGI 480

B0AT1 (also called HND) transports neutral amino acids. Human B0AT1 is encoded by the SLC6A19 gene. B0AT1 is expressed primarily in the kidney and intestine; it requires collectrin for expression in the kidney, and angiotensin-converting enzyme 2 for expression in the intestine. Interaction with these two proteins implicates B0AT1 in more complex processes such as glomerular structure, exocytosis, and blood pressure control. The autosomal recessive disorder, Hartnup disorder, is caused by mutations in B0AT1. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 581

>gnl|CDD|212043 cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain

 Score = 59.4 bits (145), Expect = 3e-10
 Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 25/160 (15%)

Query: 3   DAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGS 62
            A++ +++++  + +AG VIF  + +   +           GPGL+FI  PA  A MPG 
Sbjct: 246 SALIVAILDTLVALLAGLVIFPAV-FAFGLE-------PAAGPGLLFITLPAVFAQMPGG 297

Query: 63  IFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNRE---------IFIACLFSL 113
             + ++FF++LL   L S+    E  +  L DEF   G +R+         IF+  + S 
Sbjct: 298 RLFGILFFLLLLFAALTSAISLLEVPVAYLIDEF---GWSRKKATLIVGIIIFLLGIPSA 354

Query: 114 YFVVGLASCAQGGFYFFHLLDKYAAGY-----SILIAVLF 148
                L+     G   F LLD   +        +LIA+  
Sbjct: 355 LSFGVLSDPTIFGKTIFDLLDFLVSNILLPLGGLLIAIFV 394

SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1. Length = 439

>gnl|CDD|212041 cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and related proteins; solute binding domain

 Score = 51.9 bits (125), Expect = 9e-08
 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 4/114 (3%)

Query: 46  GLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREI 105
           GL FI  P   + MPG  F+  ++F +L   G+ SS    + +I  L +E      +R+ 
Sbjct: 300 GLGFIALPNVFSQMPGGQFFGFLWFFLLFFAGITSSIAMLQPLIAFLEEEL---KWSRKH 356

Query: 106 FIACLFSLYFVVGLASCA-QGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYG 158
               +F+L  +VGL              LD +     +++  L E I F  ++G
Sbjct: 357 AALWIFALVIIVGLPVAFEFIDLKALDELDFWVGTILLVVLGLIEVIVFAWIFG 410

LeuT is a bacterial amino acid transporter with specificity for the hydrophobic amino acids glycine, alanine, methionine, and leucine. This subgroup belongs to the solute carrier 6 (SLC6) transporter family; LeuT has been used as a structural template for understanding fundamental aspects of SLC6 function. It has an arrangement of 12 transmembrane helices (TMs), which appears to be a common motif for eukaryotic and some prokaryotic and archaeal SLC6s: an inverted topology repeat: TMs1-5 and TMs6-10, and TMs11-12. Length = 500

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	252
KOG3660|consensus	629		100.0
KOG3659|consensus	629		100.0
PF00209	523	SNF: Sodium:neurotransmitter symporter family; Int	100.0
COG0733	439	Na+-dependent transporters of the SNF family [Gene	99.94

>KOG3660|consensus

Probab=100.00  E-value=1.7e-48  Score=379.25  Aligned_cols=229  Identities=45%  Similarity=0.799  Sum_probs=218.3

Q ss_pred             CCceEEeHhHHHHHHHHHHHHHHHHhhHHHHhhCC-CcccccccCCceEeehhHHHHhcCCChhHHHHHHHHHHHHHhhh
Q psy5258           1 MPDAILTSLINSCTSFIAGFVIFSVLGYMAHISGV-PINEVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLD   79 (252)
Q Consensus         1 ~rda~~i~~~n~~~Si~ag~~iFs~lG~~a~~~g~-~~~~v~~~G~gL~Fi~~P~a~~~mp~~~~wa~lFF~~l~~~gl~   79 (252)
                      .||+.++++.|+.+|+++|+++||++||||++.|+ ++++++++|+||+|++||+++++||.+++|+.|||+|++++|++
T Consensus       319 yrDa~lv~~~~~~tS~~~g~~iFsilGfla~~~~v~~~~~v~~~g~~LaFi~YP~a~~~~p~~plWs~LfF~ml~~LG~~  398 (629)
T KOG3660|consen  319 YRDAILVVLLDTITSLLAGFAIFSILGFLAHEQGVSDIAEVAKSGPGLAFIAYPEALAQMPLSPLWSGLFFFMLLLLGLD  398 (629)
T ss_pred             eeeeeeeeecccHHHHHHHHHHHHHHHHHHHHhCCcchhhccCCCCchhhhhhHHHHHhCcccHHHHHHHHHHHHHHHhh
Confidence            48999999999999999999999999999999999 89999999999999999999999999999999999999999999


Q ss_pred             cCCCCCcchhhhhhhccCCCCCchHHHHHHHHHHHHHhhhccccccccccccchhhhhhhhHHHHHHHHHHhhceeEEee
Q psy5258          80 SSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGL  159 (252)
Q Consensus        80 S~i~~~E~ivt~l~d~f~~~~~~R~~~~~~~c~~~fllgl~~~t~~G~y~~~l~D~~~~~~~ll~~~l~e~l~~~~i~~~  159 (252)
                      |+++++|.++|++.|+||+.|++|+.+++.+|+++|++|++++|++|.|+++++|+|++++.+++++++|++.+.|+|+.
T Consensus       399 s~~~~ve~i~t~i~D~Fp~~~~~~~~~vl~vcv~~fllGl~~~t~~G~y~~~l~D~y~a~~~~~~~~~~e~~~i~wiYG~  478 (629)
T KOG3660|consen  399 SQFAIVETIVTAIVDEFPRLRNRRWIVVLFVCVVGFLLGLPLVTEGGIYWFQLFDYYAASWSLLFIAIFECFAIAWVYGA  478 (629)
T ss_pred             hHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHcchheecCcchhHHHHHHHHhchHHHHHHHHHHHHHHhheecc
Confidence            99999999999999999977889999999999999999999999999999999999999999999999999888888864


Q ss_pred             c----------------------------------------ccccCCCC-CcccchhhhhhhhHhhhhhhHHHHHHHHHH
Q psy5258         160 T----------------------------------------TYEPLSYE-SYVYPQWANVLGVAIASSSVIMIPGMAVYQ  198 (252)
Q Consensus       160 ~----------------------------------------~~~~l~y~-~~~~p~W~~~igw~i~~~~~l~IP~~~i~~  198 (252)
                      .                                        +|+|.+|+ .|.||.|.+.+||+++++|+++||++++++
T Consensus       479 ~~~~~di~~M~g~~~~~~~~~~~W~f~tP~~~~~i~v~s~~~~~p~~y~~~~~yP~w~~~~Gw~~a~~~~~~iP~~ai~~  558 (629)
T KOG3660|consen  479 DRFRDDIHEMIGCGRPSPYWKLCWKFVTPILLLGILVFSLVKYYPLKYNKVYVYPPWGDIVGWLVALSPLLVIPLYAIIQ  558 (629)
T ss_pred             cchHhhHHHHhCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHhccCccCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3                                        36788899 789999999999999999999999999999


Q ss_pred             HHcCCCC-HHHhhhhhcccCCCcccccccccc
Q psy5258         199 MIITPGT-FMQRLNTLLTPWRDHQTVLARSLS  229 (252)
Q Consensus       199 ~~~~~Gt-~~~r~~~~~~P~~~~~p~~~~~~~  229 (252)
                      ++|.+|+ .+||+|+.++|++||+|.++++++
T Consensus       559 ~~~~~~~~~~~R~~~~~~p~~~~~~~~~~~~~  590 (629)
T KOG3660|consen  559 ILRAKGTKLKERIKFLLRPLSDWGPRDAEAPP  590 (629)
T ss_pred             HHHccCCcHHHHHHHHhcCCcccCCccccccc
Confidence            9999996 999999999999999999986443

>KOG3659|consensus

Probab=100.00  E-value=8.7e-42  Score=323.83  Aligned_cols=221  Identities=53%  Similarity=0.851  Sum_probs=207.3

Q ss_pred             CCceEEeHhHHHHHHHHHHHHHHHHhhHHHHh---hCCCccc-ccccCCceEeehhHHHHhcCCChhHHHHHHHHHHHHH
Q psy5258           1 MPDAILTSLINSCTSFIAGFVIFSVLGYMAHI---SGVPINE-VAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTL   76 (252)
Q Consensus         1 ~rda~~i~~~n~~~Si~ag~~iFs~lG~~a~~---~g~~~~~-v~~~G~gL~Fi~~P~a~~~mp~~~~wa~lFF~~l~~~   76 (252)
                      .|||++++.+|+.||+++|+++|+++|+||+.   .+.+.++ ++.+||||+|++|||++++||.+.+|+++||+|+..+
T Consensus       357 ~rDAll~S~in~~ts~~sgfviFsvLg~~a~~~y~~~~~~e~~~~~~gp~lafivy~Eait~~~~s~fWs~iFFlmL~~l  436 (629)
T KOG3659|consen  357 YRDALLTSIINCLTSFLSGFVIFSVLGYMATLIYPCNEEIEELVAVAGPGLAFIVYPEAITNMPYSSFWSVIFFLMLLTL  436 (629)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccHHHhhhhcCCceEEEehhhHHhcCCchHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999   7778777 6789999999999999999999999999999999999


Q ss_pred             hhhcCCCCCcchhhhhhhccC-CCCCchHHHHHHHHHHHHHhhhccccccccccccchhhhhhhhHHHHHHHHHHhhcee
Q psy5258          77 GLDSSFGGSEAIITALSDEFP-LIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFII  155 (252)
Q Consensus        77 gl~S~i~~~E~ivt~l~d~f~-~~~~~R~~~~~~~c~~~fllgl~~~t~~G~y~~~l~D~~~~~~~ll~~~l~e~l~~~~  155 (252)
                      |++|+++.+|.++|.+.|+++ .+|++|+..++.+|+..+++|+++++.+|.|++++.|+|+.++++++.+++|++.+.|
T Consensus       437 gl~s~~g~~e~iit~l~d~~~~~l~~~~e~~~~~~~l~~~~~~l~~~~~~g~y~~~ll~~y~~~~~vl~~Vlie~i~Vsw  516 (629)
T KOG3659|consen  437 GLDSMFGGIEAIITPLLDEFYLSLRKHRELFTLLVCLFSFLLGLPFITAGGGYVFPLLIDYAAGLLVLFVVLIEAIAVSW  516 (629)
T ss_pred             hhHhhhhhHHHHhccccchhhhHhhhhHHHHHHHHHHHHHhhhhhhccccceeeehhhHHHhhhhHHHHHHHHHHHHHHh
Confidence            999999999999999999996 6789999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecc---------------------------------------cccCCCCCcccchhhhhhhhHhhhhhhHHHHHHHH
Q psy5258         156 VYGLTT---------------------------------------YEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAV  196 (252)
Q Consensus       156 i~~~~~---------------------------------------~~~l~y~~~~~p~W~~~igw~i~~~~~l~IP~~~i  196 (252)
                      +||..+                                       ++|.++..|.||+|+.++||.+.++++++||.+++
T Consensus       517 vYG~~rf~~d~~~Mlg~~P~~yw~v~w~~vsp~~ll~if~~~~~~~~~~~~~~y~yp~Wa~~l~~~i~~ss~~~ip~~~~  596 (629)
T KOG3659|consen  517 VYGVRRFSADVKQMLGFRPGWYWRVCWPCVSPVFLLFIFVFSLRNFSPIQVVIYAYPDWALVLGWAIRASSKICIPLYAI  596 (629)
T ss_pred             hhhHhHHHHHHHHHhCCCCchhHHHHHhhhhHHHHHHHHHHHHhccccceEEeecCCchHHHHHHHHHhhHHHHHhHHhh
Confidence            988653                                       34555567899999999999999999999999999


Q ss_pred             HHHHcCCC-CHHHhhhhhcccCCCcc
Q psy5258         197 YQMIITPG-TFMQRLNTLLTPWRDHQ  221 (252)
Q Consensus       197 ~~~~~~~G-t~~~r~~~~~~P~~~~~  221 (252)
                      |++++.+| +.+||+++.++|++++.
T Consensus       597 y~~~~~~~~~~~~~~~~~~~p~~~~~  622 (629)
T KOG3659|consen  597 YKFVSRRGVSGKERLHRWITPEEGHA  622 (629)
T ss_pred             heeeecCCCCchhhcccccCCCCCCc
Confidence            99999887 99999999999997665

>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses

Probab=100.00  E-value=1.2e-39  Score=314.88  Aligned_cols=201  Identities=46%  Similarity=0.841  Sum_probs=159.0

Q ss_pred             CceEEeHhHHHHHHHHHHHHHHHHhhHHHHhhCCCcccccccCCceEeehhHHHHhcCCChhHHHHHHHHHHHHHhhhcC
Q psy5258           2 PDAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSS   81 (252)
Q Consensus         2 rda~~i~~~n~~~Si~ag~~iFs~lG~~a~~~g~~~~~v~~~G~gL~Fi~~P~a~~~mp~~~~wa~lFF~~l~~~gl~S~   81 (252)
                      ||++++++.|+++|++||+++|+++||++++.|.+++++.++||||+|+++|+++++||.+++|+++||+|++++|++|+
T Consensus       284 ~~a~~v~~~~~~~sllag~~if~~~g~~a~~~~~~i~~v~~~g~~L~Fi~~P~~~~~~p~~~~~~~lFFl~l~~agl~S~  363 (523)
T PF00209_consen  284 RDALIVAFINTLVSLLAGLVIFSVLGFLANELGVPISDVPESGPGLAFIVLPEAFSQMPGGRFWAILFFLMLFLAGLTSQ  363 (523)
T ss_dssp             HHHHHHHHHHHHHHHTTGTHHHHHHHHHHHHHHHHHHH--H-CHHHHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceEEEcCchhhhHhHHHHHHhHHhhcccCCCCChhHhhCcCCCchHHHHHHHHHcCCCCcChHHHHHHHHHHHHhhhc
Confidence            68999999999999999999999999999999999988889999999999999999999999999999999999999999


Q ss_pred             CCCCcchhhhhhhccCCCCCchHHHHHHHHHHHHHhhhccccccccccccchhhhhhhhHHHHHHHHHHhhceeEEeecc
Q psy5258          82 FGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTT  161 (252)
Q Consensus        82 i~~~E~ivt~l~d~f~~~~~~R~~~~~~~c~~~fllgl~~~t~~G~y~~~l~D~~~~~~~ll~~~l~e~l~~~~i~~~~~  161 (252)
                      ++++|++++.+.|+++..|++|++++..+|+.++++|+|+++++|.|+++++|++.+++.+++++++|++.+.|+|+..+
T Consensus       364 i~~~E~iv~~l~d~~~~~~~~r~~~~~~v~~~~~l~gl~~~t~~G~~~~~~~d~~~~~~~l~~~~l~e~i~v~wvyG~~~  443 (523)
T PF00209_consen  364 ISMLEVIVSALMDEFPISRKKRKKVTLIVCLVGFLLGLPFCTQGGIYIFDLLDDYVGSISLLIIALLECIAVGWVYGWDR  443 (523)
T ss_dssp             HHHHHHHHHHHHHTST----HHHHHHHHHHHHHHHHHHHHHBT---THHHHHHHHTTTHHHHHHHHHHHHHHHTTSTHHH
T ss_pred             CCceeceeEeeeecCccchhhccceeHHHhhhHeEeccccccccHHHhcchHhhcchhHHHHHHHHHHHHheecccccee
Confidence            99999999999999997677899999999999999999999999999999999999999999999999988888887543


Q ss_pred             ---------------------------------------cccCCCCCcccchhhhhhhhHhhhhhhHHHHHHHHHHHHcC
Q psy5258         162 ---------------------------------------YEPLSYESYVYPQWANVLGVAIASSSVIMIPGMAVYQMIIT  202 (252)
Q Consensus       162 ---------------------------------------~~~l~y~~~~~p~W~~~igw~i~~~~~l~IP~~~i~~~~~~  202 (252)
                                                             +++.+|++|.||.|+..+||++.++++++||++++|+++|+
T Consensus       444 ~~~di~~~~g~~~~~~w~~~w~~v~Pi~ll~ili~~i~~~~~~~~~~~~yp~w~~~igw~i~~~~~l~Ip~~~i~~~~~~  523 (523)
T PF00209_consen  444 FREDINEMLGFKPGKFWKFLWKYVTPIILLVILIWSIIDYKPLSYNSYIYPWWAIAIGWLIALSPLLPIPIYAIYKICRT  523 (523)
T ss_dssp             HHHHHHTT-SS---THHHHHHHTHHHHHHHHHHHHHHHHTHHHHHHSS-TTHHHHHHHH---------------------
T ss_pred             hhhhhcccccccHHHHHHhhEEEeecccccceeeeeEEecCCCCCcceEEhHheEEEEEEecccccccccccccccccCC
Confidence                                                   33445567889999999999999999999999999999974

High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....

>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]

Probab=99.94  E-value=3.5e-27  Score=219.90  Aligned_cols=174  Identities=28%  Similarity=0.424  Sum_probs=155.1

Q ss_pred             CceEEeHhHHHHHHHHHHHHHHHHhhHHHHhhCCCcccccccCCceEeehhHHHHhcCCChhHHHHHHHHHHHHHhhhcC
Q psy5258           2 PDAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSS   81 (252)
Q Consensus         2 rda~~i~~~n~~~Si~ag~~iFs~lG~~a~~~g~~~~~v~~~G~gL~Fi~~P~a~~~mp~~~~wa~lFF~~l~~~gl~S~   81 (252)
                      ++++.+++.|+..|++||++|||.++.+.    .+    +++||||+|+++|++|++||.+++++++||+.+.+||+||.
T Consensus       249 ~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g----~~----~~~GpgL~Fi~LP~if~~mp~G~~~~~lFFl~l~fAalTS~  320 (439)
T COG0733         249 SSALSIVLLNTLISLLAGLVIFPALFSFG----AD----ASQGPGLVFIVLPAVFNQMPLGTLFGILFFLLLLFAALTSA  320 (439)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhc----cC----CCCCCeeehhHHHHHHHhCchhHHHHHHHHHHHHHHHHHHH
Confidence            67889999999999999999999997654    34    37899999999999999999999999999999999999999


Q ss_pred             CCCCcchhhhhhhccCCCCCchHHHHHHHHHHHHHhhhccccccccccccchhhhhhhhHHHHHHHHHHhhceeEEeecc
Q psy5258          82 FGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTT  161 (252)
Q Consensus        82 i~~~E~ivt~l~d~f~~~~~~R~~~~~~~c~~~fllgl~~~t~~G~y~~~l~D~~~~~~~ll~~~l~e~l~~~~i~~~~~  161 (252)
                      ++++|++++.++|+++   .+|+++++.++.+.+++|+|+.++.|.+++|.+|+.++++.++.+++++++++.|+++..+
T Consensus       321 iSmlE~~va~l~~~~~---~~R~~a~~~~~~~~fl~gi~~~ls~g~~~fD~~D~~~s~~l~plgaL~~~i~~~w~~~~~~  397 (439)
T COG0733         321 ISMLEVLVAALIDKFG---ISRKKATWLIGILIFLLGIPSILSFGLSIFDLVDFVVSNILMPLGALLIAIFVGWVLKKEL  397 (439)
T ss_pred             HHHHHHHHHHHHHHhC---cchHHHHHHHHHHHHHHhHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            9999999999999986   6899999999999999999999999999999999999999999999999999999997554


Q ss_pred             c-ccCCCC-CcccchhhhhhhhHhhhh
Q psy5258         162 Y-EPLSYE-SYVYPQWANVLGVAIASS  186 (252)
Q Consensus       162 ~-~~l~y~-~~~~p~W~~~igw~i~~~  186 (252)
                      . ++++-+ +....+|...++++.+..
T Consensus       398 ~~~~~~~~s~~~~~~w~~~vr~i~Pi~  424 (439)
T COG0733         398 LREELNAGSAKLFKIWLYLVRYIAPIV  424 (439)
T ss_pred             HHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence            3 344433 345567888888876633

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	252
2a65_A	519	Leutaa, Na(+):neurotransmitter symporter (SNF fami	2e-18

>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Length = 519

 Score = 82.8 bits (205), Expect = 2e-18
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 9/157 (5%)

Query: 4   AILTSLINSCTSFIAGFVI--FSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPG 61
            +  + +N     I G  I   + + +    + V I +       L FI  PA  +   G
Sbjct: 279 GLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAG--AFNLGFITLPAIFSQTAG 336

Query: 62  SIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLAS 121
             F   ++F +L   GL SS    + +I  L DE      +R+  +    ++ F      
Sbjct: 337 GTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDEL---KLSRKHAVLWTAAIVFFSAHLV 393

Query: 122 CAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYG 158
                      +D +A    ++   L E I F  ++G
Sbjct: 394 M--FLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFG 428

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	252
2a65_A	519	Leutaa, Na(+):neurotransmitter symporter (SNF fami	100.0

>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...

Probab=100.00  E-value=2.4e-36  Score=289.46  Aligned_cols=177  Identities=21%  Similarity=0.291  Sum_probs=159.4

Q ss_pred             CceEEeHhHHHHHHHHHHHHHHHHhhHHHHhhCCC-cccccccC-CceEeehhHHHHhcCCChhHHHHHHHHHHHHHhhh
Q psy5258           2 PDAILTSLINSCTSFIAGFVIFSVLGYMAHISGVP-INEVAVEG-PGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLD   79 (252)
Q Consensus         2 rda~~i~~~n~~~Si~ag~~iFs~lG~~a~~~g~~-~~~v~~~G-~gL~Fi~~P~a~~~mp~~~~wa~lFF~~l~~~gl~   79 (252)
                      ||++++++.|+.+|++||++||+.+||++  +|.+ +++++++| |||+|++||+++++||++++|+++||+|++++|+|
T Consensus       277 ~~a~~v~~~n~~~sllaG~~IF~~lgf~a--~g~~~~~~v~~~G~pgL~Fi~~P~af~~mp~g~~~~~lFF~~l~~aglt  354 (519)
T 2a65_A          277 LSGLTAATLNEKAEVILGGSISIPAAVAF--FGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLT  354 (519)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHHH--HCHHHHHHHHHHCSSHHHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcchHHHhcCCCCceeHHHHHHHHHhCCCccchHHHHHHHHHHHHHH
Confidence            78999999999999999999999999997  5777 77778899 99999999999999999999999999999999999


Q ss_pred             cCCCCCcchhhhhhhccCCCCCchHHHHHHHHHHHHHhhhcccccc-ccccccchhhhhhhhHHHHHHHHHHhhceeEEe
Q psy5258          80 SSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASCAQG-GFYFFHLLDKYAAGYSILIAVLFESIAFIIVYG  158 (252)
Q Consensus        80 S~i~~~E~ivt~l~d~f~~~~~~R~~~~~~~c~~~fllgl~~~t~~-G~y~~~l~D~~~~~~~ll~~~l~e~l~~~~i~~  158 (252)
                      |+++++|++++.++|+++   ++|++++..+|++++++|+|++|++ |   +|++|++++++.+++++++|++.+.|+|+
T Consensus       355 S~i~~~E~~vt~l~D~~~---~~R~~~~~~v~~~~fllgl~~~~~~~g---~~~~D~~~~~~~l~~~~l~~~i~v~wv~g  428 (519)
T 2a65_A          355 SSIAIMQPMIAFLEDELK---LSRKHAVLWTAAIVFFSAHLVMFLNKS---LDEMDFWAGTIGVVFFGLTELIIFFWIFG  428 (519)
T ss_dssp             HHHHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHHHHHBTTH---HHHHHHHTTTHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHhhHhHHHHHHhhC---CcHHHHHHHHHHHHHHHHHHHHcCCCC---cchHHHHHhHHHHHHHHHHHHHhhheeee
Confidence            999999999999999986   5899999999999999999999998 7   99999999999999999999988888887


Q ss_pred             ecc---------------------------------------cccCCCCCcccchhhhhhhhHhhhhhhH
Q psy5258         159 LTT---------------------------------------YEPLSYESYVYPQWANVLGVAIASSSVI  189 (252)
Q Consensus       159 ~~~---------------------------------------~~~l~y~~~~~p~W~~~igw~i~~~~~l  189 (252)
                      ..+                                       +.|.+|++|.||.|.   ||++.+++++
T Consensus       429 ~~~~~~~i~~~~~~~~~~~w~~~~~~v~P~~l~~i~~~~~~~~~~~~y~~y~~~~~~---Gw~~~~~~~i  495 (519)
T 2a65_A          429 ADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWI---TRFYIIGLFL  495 (519)
T ss_dssp             HHHHHHHHHTTCSSCCCTHHHHHHHTHHHHHHHHHHHHHHHHTHHHHHHSSCTTHHH---HHHHHHHHHH
T ss_pred             hhHHHHHHHcccCCchHHHHHHeEEehHHHHHHHHHHHHHHhCcCCCCCCccCccHH---HHHHHHHHHH
Confidence            543                                       234455567788884   9988877444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	252
d2a65a1	509	f.54.1.1 (A:5-513) Na(+):neurotransmitter symporte	4e-16

>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Length = 509

class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

 Score = 74.8 bits (183), Expect = 4e-16
 Identities = 35/233 (15%), Positives = 65/233 (27%), Gaps = 47/233 (20%)

Query: 1   MPDAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMP 60
           +   +  + +N     I G  I              +         L FI  PA  +   
Sbjct: 272 VLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFITLPAIFSQTA 331

Query: 61  GSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLA 120
           G  F   ++F +L   GL SS    + +I  L DE  L   +  ++ A +          
Sbjct: 332 GGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAVLWTAAIVFFSA----- 386

Query: 121 SCAQGGFYFFHLLDKYAAGYSILIAVLFESIAF--------------------------- 153
                       +D +A    ++   L E I F                           
Sbjct: 387 HLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYY 446

Query: 154 ------------IIVYGLTTYEPLSYESYVYPQWAN---VLGVAIASSSVIMI 191
                       ++V     Y P   E   +  W     ++G+ +  + ++ +
Sbjct: 447 VMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFYIIGLFLFLTFLVFL 499

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	252
d2a65a1	509	Na(+):neurotransmitter symporter homologue LeuT {A	99.93

>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}

class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.93  E-value=2.8e-28  Score=231.12  Aligned_cols=157  Identities=20%  Similarity=0.263  Sum_probs=139.2

Q ss_pred             CceEEeHhHHHHHHHHHHHHHHHHhhHHHHhhCCCcccccccCCceEeehhHHHHhcCCChhHHHHHHHHHHHHHhhhcC
Q psy5258           2 PDAILTSLINSCTSFIAGFVIFSVLGYMAHISGVPINEVAVEGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSS   81 (252)
Q Consensus         2 rda~~i~~~n~~~Si~ag~~iFs~lG~~a~~~g~~~~~v~~~G~gL~Fi~~P~a~~~mp~~~~wa~lFF~~l~~~gl~S~   81 (252)
                      ||+++++..|+.+|+++|.+++...|+++.....+.+....+||||+|++||+++++||++++|+++||+|++++|++|+
T Consensus       273 rda~~v~~~~~~~si~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~L~Fv~~P~~fs~~~~~~~~~~lFF~~l~~~gl~s~  352 (509)
T d2a65a1         273 LSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSS  352 (509)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHCHHHHHHHHHHCSSHHHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceEEEecccceeeccccchhhhhheeeeccccccccccccCCCchhhhhHHHhhcCCcchhHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999998888877655444455567899999999999999999999999999999999999999


Q ss_pred             CCCCcchhhhhhhccCCCCCchHHHHHHHHHHHHHhhhccccccccccccchhhhhhhhHHHHHHHHHHhhceeEEeecc
Q psy5258          82 FGGSEAIITALSDEFPLIGNNREIFIACLFSLYFVVGLASCAQGGFYFFHLLDKYAAGYSILIAVLFESIAFIIVYGLTT  161 (252)
Q Consensus        82 i~~~E~ivt~l~d~f~~~~~~R~~~~~~~c~~~fllgl~~~t~~G~y~~~l~D~~~~~~~ll~~~l~e~l~~~~i~~~~~  161 (252)
                      ++++|++++.+.|+++.  .||+..++..|+++++.++++.+++|   ++++|++++++++++++++|++.+.|+|+..+
T Consensus       353 i~~~e~~v~~l~d~~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~D~~~~~~~l~~~~l~e~i~v~w~yg~~r  427 (509)
T d2a65a1         353 IAIMQPMIAFLEDELKL--SRKHAVLWTAAIVFFSAHLVMFLNKS---LDEMDFWAGTIGVVFFGLTELIIFFWIFGADK  427 (509)
T ss_dssp             HHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHHHHHHHHHBTTH---HHHHHHHTTTHHHHHHHHHHHHHHHTTSCHHH
T ss_pred             hccccchhHHHHHhcCC--chhhhhhheeEEEEhhhhHHHHhcch---HHHHHHHHHHHHHHHHHHHHHheeeeEecHHH
Confidence            99999999999999883  45666777889999999999999877   56889999999999999999999999998765


Q ss_pred             cc
Q psy5258         162 YE  163 (252)
Q Consensus       162 ~~  163 (252)
                      ++
T Consensus       428 ~~  429 (509)
T d2a65a1         428 AW  429 (509)
T ss_dssp             HH
T ss_pred             HH
Confidence            43