Psyllid ID: psy5260

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
MVCLLVCSTPLQVWAPWLSHFYYLDYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSLVRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQALDPTSSLKSKL
cEEEEEcccEEEEEcccEEEEEEEccEEEEEEccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHccccccccEEEEEEcccccccccEEEEEEEccEEEEEEEccccccccccHHHHHHHHHHHHHHccccccccccc
ccEEccccEEEEEEcccEEEEEEcccccEEEcccccEEEEEcccccccccccccHHHHHHHHHHHHHHcHHHHccHHHHHHccccccccccEEEEEEccccEEEEEccccccccEEcHHHHHHHHHHHHHHHHHccccHccc
mvcllvcstplqvwapwlshfyyldydvyiiphsngavtlggcrhydsysrdisrHDTASILERCYSllprleeapvlyewcglrphrsLVRVEIEQIGRLKVihnyghggygvttapgtsRYAVQLVKQaldptsslkskl
MVCLLVCSTPLQVWAPWLSHFYYLDYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSLVRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVkqaldptsslkskl
MVCLLVCSTPLQVWAPWLSHFYYLDYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSLVRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQALDPTSSLKSKL
*VCLLVCSTPLQVWAPWLSHFYYLDYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSLVRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVK*************
MVCLLVCSTPLQVWAPWLSHFYYLDYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSLVRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQA***********
MVCLLVCSTPLQVWAPWLSHFYYLDYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSLVRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQAL**********
MVCLLVCSTPLQVWAPWLSHFYYLDYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSLVRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQALDPT*******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVCLLVCSTPLQVWAPWLSHFYYLDYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYEWCGLRPHRSLVRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQALDPTSSLKSKL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query142 2.2.26 [Sep-21-2011]
A8WXM1331 D-aspartate oxidase 1 OS= N/A N/A 0.908 0.389 0.367 3e-18
O45307334 D-aspartate oxidase 2 OS= yes N/A 0.880 0.374 0.371 1e-17
Q19564334 D-aspartate oxidase 1 OS= no N/A 0.915 0.389 0.357 2e-17
P22942347 D-amino-acid oxidase OS=O yes N/A 0.880 0.360 0.381 8e-16
O35078346 D-amino-acid oxidase OS=R yes N/A 0.852 0.349 0.4 2e-15
Q9Z302346 D-amino-acid oxidase OS=C yes N/A 0.852 0.349 0.385 5e-15
A3KCL7341 D-aspartate oxidase OS=Su yes N/A 0.929 0.387 0.376 7e-14
P00371347 D-amino-acid oxidase OS=S no N/A 0.887 0.363 0.364 7e-14
P14920347 D-amino-acid oxidase OS=H yes N/A 0.852 0.348 0.377 8e-14
Q9Z1M5347 D-amino-acid oxidase OS=C yes N/A 0.852 0.348 0.377 8e-14
>sp|A8WXM1|OXDD1_CAEBR D-aspartate oxidase 1 OS=Caenorhabditis briggsae GN=CBG04460 PE=3 SV=1 Back     alignment and function desciption
 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 71/136 (52%), Gaps = 7/136 (5%)

Query: 3   CLLVCSTPLQVWAPWLSHFYYLDYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASIL 62
           C  +    L+V APW  HF Y D+  + IP  N +V +G  +  + +  +I+  D   IL
Sbjct: 195 CYPIRGVILEVDAPWHKHFNYRDFTTFTIPKEN-SVVIGSTKQDNRWDLEITDEDRNDIL 253

Query: 63  ERCYSLLPRLEEAPVLYEWCGLRPHRSLVRVEIEQIGRLK------VIHNYGHGGYGVTT 116
            R   L P + E  +L EW  LRP R  VR+E +Q    +      V+H+YGHG  G T 
Sbjct: 254 SRYIELHPGMREPKILKEWSALRPGRKHVRIESQQRKTTETGKEYTVVHHYGHGSNGFTL 313

Query: 117 APGTSRYAVQLVKQAL 132
             GT+  A +LVK+AL
Sbjct: 314 GWGTAIEATKLVKKAL 329
Selectively catalyzes the oxidative deamination of D-aspartate and its N-methylated derivative, N-methyl D-aspartate.
Caenorhabditis briggsae (taxid: 6238)
EC: 1EC: .EC: 4EC: .EC: 3EC: .EC: 1
>sp|O45307|OXDD2_CAEEL D-aspartate oxidase 2 OS=Caenorhabditis elegans GN=C47A10.5 PE=1 SV=2 Back     alignment and function description
>sp|Q19564|OXDD1_CAEEL D-aspartate oxidase 1 OS=Caenorhabditis elegans GN=F18E3.7 PE=1 SV=1 Back     alignment and function description
>sp|P22942|OXDA_RABIT D-amino-acid oxidase OS=Oryctolagus cuniculus GN=DAO PE=2 SV=1 Back     alignment and function description
>sp|O35078|OXDA_RAT D-amino-acid oxidase OS=Rattus norvegicus GN=Dao PE=2 SV=1 Back     alignment and function description
>sp|Q9Z302|OXDA_CRIGR D-amino-acid oxidase OS=Cricetulus griseus GN=DAO PE=2 SV=1 Back     alignment and function description
>sp|A3KCL7|OXDD_PIG D-aspartate oxidase OS=Sus scrofa GN=DDO PE=2 SV=1 Back     alignment and function description
>sp|P00371|OXDA_PIG D-amino-acid oxidase OS=Sus scrofa GN=DAO PE=1 SV=2 Back     alignment and function description
>sp|P14920|OXDA_HUMAN D-amino-acid oxidase OS=Homo sapiens GN=DAO PE=1 SV=3 Back     alignment and function description
>sp|Q9Z1M5|OXDA_CAVPO D-amino-acid oxidase OS=Cavia porcellus GN=DAO PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query142
312376514 296 hypothetical protein AND_12652 [Anophele 0.887 0.425 0.625 2e-38
58387114 334 AGAP005323-PB [Anopheles gambiae str. PE 0.894 0.380 0.590 6e-38
157133215 334 d-amino acid oxidase [Aedes aegypti] gi| 0.894 0.380 0.583 9e-37
157119089 334 d-amino acid oxidase [Aedes aegypti] gi| 0.894 0.380 0.575 4e-36
125811087 335 GA11563 [Drosophila pseudoobscura pseudo 0.894 0.379 0.533 6e-34
194884189 335 GG22723 [Drosophila erecta] gi|190659365 0.894 0.379 0.556 7e-34
195120786 335 GI20172 [Drosophila mojavensis] gi|19390 0.894 0.379 0.548 9e-34
170047888 338 d-amino acid oxidase [Culex quinquefasci 0.894 0.375 0.552 1e-33
170062616236 d-amino acid oxidase [Culex quinquefasci 0.894 0.538 0.552 1e-33
195383708 335 GJ20129 [Drosophila virilis] gi|19414536 0.894 0.379 0.548 2e-33
>gi|312376514|gb|EFR23574.1| hypothetical protein AND_12652 [Anopheles darlingi] Back     alignment and taxonomy information
 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 82/131 (62%), Positives = 97/131 (74%), Gaps = 5/131 (3%)

Query: 12  QVWAPWLSHFYYLDYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPR 71
           +V APW+   +Y D+D Y+IP   G VTLGGCR+YDSY+ D+ RHD A+I ERC SLLP 
Sbjct: 167 KVRAPWVKTAFYADFDTYVIPGFEG-VTLGGCRNYDSYNTDVCRHDAAAIRERCESLLPS 225

Query: 72  LEEAPVLYEWCGLRPHRSLVRVEIEQI----GRLKVIHNYGHGGYGVTTAPGTSRYAVQL 127
           L+ APVL E  GLRPHR  VRVEIE +    G L+V+HNYGHGGYGVTTAPGT++YAVQL
Sbjct: 226 LKSAPVLREAVGLRPHRDPVRVEIELVSTTEGALRVVHNYGHGGYGVTTAPGTAKYAVQL 285

Query: 128 VKQALDPTSSL 138
           V  AL   S L
Sbjct: 286 VYDALKSNSKL 296

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|58387114|ref|XP_315337.2| AGAP005323-PB [Anopheles gambiae str. PEST] gi|158293988|ref|XP_001688634.1| AGAP005323-PA [Anopheles gambiae str. PEST] gi|55238139|gb|EAA11815.2| AGAP005323-PB [Anopheles gambiae str. PEST] gi|157015356|gb|EDO63640.1| AGAP005323-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|157133215|ref|XP_001662804.1| d-amino acid oxidase [Aedes aegypti] gi|108870913|gb|EAT35138.1| AAEL012674-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|157119089|ref|XP_001659331.1| d-amino acid oxidase [Aedes aegypti] gi|108875482|gb|EAT39707.1| AAEL008512-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|125811087|ref|XP_001361743.1| GA11563 [Drosophila pseudoobscura pseudoobscura] gi|195153509|ref|XP_002017668.1| GL17186 [Drosophila persimilis] gi|54636919|gb|EAL26322.1| GA11563 [Drosophila pseudoobscura pseudoobscura] gi|194113464|gb|EDW35507.1| GL17186 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|194884189|ref|XP_001976178.1| GG22723 [Drosophila erecta] gi|190659365|gb|EDV56578.1| GG22723 [Drosophila erecta] Back     alignment and taxonomy information
>gi|195120786|ref|XP_002004902.1| GI20172 [Drosophila mojavensis] gi|193909970|gb|EDW08837.1| GI20172 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|170047888|ref|XP_001851437.1| d-amino acid oxidase [Culex quinquefasciatus] gi|167870135|gb|EDS33518.1| d-amino acid oxidase [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|170062616|ref|XP_001866747.1| d-amino acid oxidase [Culex quinquefasciatus] gi|167880481|gb|EDS43864.1| d-amino acid oxidase [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|195383708|ref|XP_002050568.1| GJ20129 [Drosophila virilis] gi|194145365|gb|EDW61761.1| GJ20129 [Drosophila virilis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query142
FB|FBgn0033543335 CG12338 [Drosophila melanogast 0.894 0.379 0.563 2.8e-34
UNIPROTKB|E1BUW4328 E1BUW4 "Uncharacterized protei 0.908 0.393 0.409 2.1e-20
WB|WBGene00008127334 ddo-1 [Caenorhabditis elegans 0.859 0.365 0.395 3.8e-18
UNIPROTKB|O45307334 C47A10.5 "D-aspartate oxidase 0.859 0.365 0.395 3.8e-18
UNIPROTKB|A8WXM1331 CBG04460 "D-aspartate oxidase 0.908 0.389 0.375 6.1e-18
WB|WBGene00017565334 ddo-2 [Caenorhabditis elegans 0.908 0.386 0.360 2e-17
UNIPROTKB|Q19564334 F18E3.7 "D-aspartate oxidase 1 0.908 0.386 0.360 2e-17
ZFIN|ZDB-GENE-080204-116339 zgc:172341 "zgc:172341" [Danio 0.852 0.356 0.401 2.2e-17
UNIPROTKB|F1Q3Q2375 DAO "Uncharacterized protein" 0.887 0.336 0.385 1.1e-16
ZFIN|ZDB-GENE-040426-2634348 dao.2 "D-amino-acid oxidase 2" 0.922 0.376 0.401 2.2e-16
FB|FBgn0033543 CG12338 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 75/133 (56%), Positives = 95/133 (71%)

Query:    11 LQVWAPWLSHFYYLDYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLP 70
             L+V APW+   +Y DYD Y++P     VTLGGCR +DSY+ +  ++D+ +I ERCY LLP
Sbjct:   204 LKVRAPWVKTAFYGDYDTYVLPGFE-TVTLGGCRQFDSYNTEWCKYDSMAIRERCYDLLP 262

Query:    71 RLEEAPVLYEWCGLRPHRSLVRVEIEQI----GR-LKVIHNYGHGGYGVTTAPGTSRYAV 125
              L +A ++ E  GLRPHRS+VRVE E I    GR LKV+HNYGHGGYGVTTAPGT+ YAV
Sbjct:   263 SLRKAEIVRECVGLRPHRSVVRVEPELITNPEGRRLKVVHNYGHGGYGVTTAPGTAMYAV 322

Query:   126 QLVKQALDPTSSL 138
             +LV+  L   S L
Sbjct:   323 RLVRDLLAGNSKL 335
GO:0008445 "D-aspartate oxidase activity" evidence=ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0003884 "D-amino-acid oxidase activity" evidence=IEA
UNIPROTKB|E1BUW4 E1BUW4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
WB|WBGene00008127 ddo-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|O45307 C47A10.5 "D-aspartate oxidase 2" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|A8WXM1 CBG04460 "D-aspartate oxidase 1" [Caenorhabditis briggsae (taxid:6238)] Back     alignment and assigned GO terms
WB|WBGene00017565 ddo-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q19564 F18E3.7 "D-aspartate oxidase 1" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080204-116 zgc:172341 "zgc:172341" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q3Q2 DAO "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2634 dao.2 "D-amino-acid oxidase 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O07727DAO_MYCTU1, ., 4, ., 3, ., 30.56330.50.2218yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query142
COG0665387 COG0665, DadA, Glycine/D-amino acid oxidases (deam 9e-12
TIGR02352337 TIGR02352, thiamin_ThiO, glycine oxidase ThiO 7e-09
>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] Back     alignment and domain information 
 Score = 60.7 bits (147), Expect = 9e-12
 Identities = 36/126 (28%), Positives = 49/126 (38%), Gaps = 9/126 (7%)

Query: 10  PLQVWAPWLSHFYYLDYDVYIIPHSNGAVTLGGC-RHYDSYSRDISRHDT--ASILERCY 66
            L             D   YI P  +G + +GG          D  R D   A +L    
Sbjct: 241 GLLADGLAPVVLVVDDGGGYIRPRGDGRLRVGGTDEEGGDDPSDPEREDLVIAELLRVAR 300

Query: 67  SLLPRLEEAPVLYEWCGLRPHRSLVRVEIEQIGRL----KVIHNYGHGGYGVTTAPGTSR 122
           +LLP L +A +   W GLRP  +   + +  IGR      +    GHGG+G T AP   R
Sbjct: 301 ALLPGLADAGIEAAWAGLRPPTTPDGLPV--IGRAAPLPNLYVATGHGGHGFTLAPALGR 358

Query: 123 YAVQLV 128
               L+
Sbjct: 359 LLADLI 364

Length = 387
>gnl|CDD|233831 TIGR02352, thiamin_ThiO, glycine oxidase ThiO Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 142
TIGR02352337 thiamin_ThiO glycine oxidase ThiO. This family con 99.89
TIGR03197381 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri 99.89
KOG3923|consensus342 99.88
PRK01747662 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans 99.86
TIGR01373407 soxB sarcosine oxidase, beta subunit family, heter 99.85
COG0665387 DadA Glycine/D-amino acid oxidases (deaminating) [ 99.85
PRK00711416 D-amino acid dehydrogenase small subunit; Validate 99.83
PRK11259376 solA N-methyltryptophan oxidase; Provisional 99.81
PRK12409410 D-amino acid dehydrogenase small subunit; Provisio 99.81
TIGR03329460 Phn_aa_oxid putative aminophosphonate oxidoreducta 99.79
TIGR03364365 HpnW_proposed FAD dependent oxidoreductase TIGR033 99.76
TIGR01377380 soxA_mon sarcosine oxidase, monomeric form. Sarcos 99.73
PF01266358 DAO: FAD dependent oxidoreductase; InterPro: IPR00 99.69
PRK11728393 hydroxyglutarate oxidase; Provisional 99.58
TIGR03377 516 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase 99.48
PRK11101 546 glpA sn-glycerol-3-phosphate dehydrogenase subunit 99.48
PRK13369 502 glycerol-3-phosphate dehydrogenase; Provisional 99.41
KOG2853|consensus509 99.38
PLN02464 627 glycerol-3-phosphate dehydrogenase 99.35
PRK12266 508 glpD glycerol-3-phosphate dehydrogenase; Reviewed 99.32
KOG2852|consensus380 99.26
KOG2844|consensus 856 98.82
KOG2820|consensus399 98.79
COG0578 532 GlpA Glycerol-3-phosphate dehydrogenase [Energy pr 98.44
COG0579429 Predicted dehydrogenase [General function predicti 97.9
KOG0042|consensus 680 97.7
KOG2665|consensus453 97.57
PRK13339497 malate:quinone oxidoreductase; Reviewed 95.6
TIGR02032295 GG-red-SF geranylgeranyl reductase family. This mo 95.3
TIGR01320483 mal_quin_oxido malate:quinone-oxidoreductase. This 94.84
TIGR01790388 carotene-cycl lycopene cyclase family protein. Thi 88.37
PRK06185407 hypothetical protein; Provisional 82.79
PRK05257494 malate:quinone oxidoreductase; Validated 80.93
PF05834374 Lycopene_cycl: Lycopene cyclase protein; InterPro: 80.72
>TIGR02352 thiamin_ThiO glycine oxidase ThiO Back     alignment and domain information 
Probab=99.89  E-value=7.5e-23  Score=158.80  Aligned_cols=128  Identities=25%  Similarity=0.400  Sum_probs=109.4

Q ss_pred             eeeccceEEEEeCCC---cce---EEEeCCeEEEEEccCCeEEEccceecCCCCCCCCHHHHHHHHHHHHhhCCCCCCCc
Q psy5260           3 CLLVCSTPLQVWAPW---LSH---FYYLDYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAP   76 (142)
Q Consensus         3 ~~p~rGqv~~~~~p~---~~~---~i~~~~~~y~~p~~~g~~~iG~t~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~   76 (142)
                      +.|+|||++.++.+.   ...   ....+...|++|+.+|++++|++.+...++..++.+..+.+.+++.++||.+.+.+
T Consensus       201 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~  280 (337)
T TIGR02352       201 LRPVRGQPLRLEAPAVPLLNRPLRAVVYGRRVYIVPRRDGRLVVGATMEESGFDTTPTLGGIKELLRDAYTILPALKEAR  280 (337)
T ss_pred             ccccCceEEEeeccccccCCcccceEEEcCCEEEEEcCCCeEEEEEeccccCccCCCCHHHHHHHHHHHHHhCCCcccCc
Confidence            579999999998651   111   12223457999999999999999887767777888899999999999999999999


Q ss_pred             eeeeeEeeecCCCC--ceeeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhh
Q psy5260          77 VLYEWCGLRPHRSL--VRVEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQA  131 (142)
Q Consensus        77 v~~~w~G~Rp~t~D--p~ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~  131 (142)
                      +.+.|+|+||+|+|  |+||.. +..+|+|+++||+|+||+++|++|+.+|++|.+.
T Consensus       281 ~~~~~~g~r~~t~D~~piig~~-~~~~~~~~~~g~~g~G~~~~p~~g~~la~~i~~~  336 (337)
T TIGR02352       281 LLETWAGLRPGTPDNLPYIGEH-PEDRRLLIATGHYRNGILLAPATAEVIADLILGK  336 (337)
T ss_pred             HHHheecCCCCCCCCCCEeCcc-CCCCCEEEEcccccCceehhhHHHHHHHHHHhcC
Confidence            99999999999999  999975 4568999999999999999999999999999863

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain Back     alignment and domain information
>KOG3923|consensus Back     alignment and domain information
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed Back     alignment and domain information
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form Back     alignment and domain information
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] Back     alignment and domain information
>PRK00711 D-amino acid dehydrogenase small subunit; Validated Back     alignment and domain information
>PRK11259 solA N-methyltryptophan oxidase; Provisional Back     alignment and domain information
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional Back     alignment and domain information
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase Back     alignment and domain information
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 Back     alignment and domain information
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form Back     alignment and domain information
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 Back     alignment and domain information
>PRK11728 hydroxyglutarate oxidase; Provisional Back     alignment and domain information
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit Back     alignment and domain information
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional Back     alignment and domain information
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional Back     alignment and domain information
>KOG2853|consensus Back     alignment and domain information
>PLN02464 glycerol-3-phosphate dehydrogenase Back     alignment and domain information
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed Back     alignment and domain information
>KOG2852|consensus Back     alignment and domain information
>KOG2844|consensus Back     alignment and domain information
>KOG2820|consensus Back     alignment and domain information
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] Back     alignment and domain information
>COG0579 Predicted dehydrogenase [General function prediction only] Back     alignment and domain information
>KOG0042|consensus Back     alignment and domain information
>KOG2665|consensus Back     alignment and domain information
>PRK13339 malate:quinone oxidoreductase; Reviewed Back     alignment and domain information
>TIGR02032 GG-red-SF geranylgeranyl reductase family Back     alignment and domain information
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase Back     alignment and domain information
>TIGR01790 carotene-cycl lycopene cyclase family protein Back     alignment and domain information
>PRK06185 hypothetical protein; Provisional Back     alignment and domain information
>PRK05257 malate:quinone oxidoreductase; Validated Back     alignment and domain information
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query142
1an9_A340 D-Amino Acid Oxidase Complex With O-Aminobenzoate L 7e-15
1kif_A347 D-Amino Acid Oxidase From Pig Kidney Length = 347 7e-15
2du8_A347 Crystal Structure Of Human D-Amino Acid Oxidase Len 8e-15
3g3e_A351 Crystal Structure Of Human D-Amino Acid Oxidase In 9e-15
>pdb|1AN9|A Chain A, D-Amino Acid Oxidase Complex With O-Aminobenzoate Length = 340 Back     alignment and structure 
Iteration: 1

 Score = 75.9 bits (185), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 76/140 (54%), Gaps = 14/140 (10%)
Query: 11  LQVWAPWLSHFYYLDYDV--------YIIPHSNGAVTLGGCRHYDSYSRDISRHDTASIL 62
           ++V APWL +F  + +D+        YIIP    AVTLGG     +++   +  D  +I 
Sbjct: 203 IKVDAPWLKNFI-ITHDLERGIYNSPYIIPGLQ-AVTLGGTFQVGNWNEINNIQDHNTIW 260
Query: 63  ERCYSLLPRLEEAPVLYEWCGLRPHRSLVRVEIEQI----GRLKVIHNYGHGGYGVTTAP 118
           E C  L P L++A ++ E+ G RP R  VR+E EQ+       +VIHNYGHGGYG+T   
Sbjct: 261 EGCCRLEPTLKDAKIVGEYTGFRPVRPQVRLEREQLRFGSSNTEVIHNYGHGGYGLTIHW 320
Query: 119 GTSRYAVQLVKQALDPTSSL 138
           G +    +L  + L+  + L
Sbjct: 321 GCALEVAKLFGKVLEERNLL 340
>pdb|1KIF|A Chain A, D-Amino Acid Oxidase From Pig Kidney Length = 347 Back     alignment and structure
>pdb|2DU8|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase Length = 347 Back     alignment and structure
>pdb|3G3E|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase In Complex With Hydroxyquinolin-2(1h) Length = 351 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query142
3g3e_A351 D-amino-acid oxidase; FAD, flavoprotein, oxidoredu 1e-30
1c0p_A363 D-amino acid oxidase; alpha-beta-alpha motif, flav 5e-26
1ryi_A382 Glycine oxidase; flavoprotein, protein-inhibitor c 5e-12
3nyc_A381 D-arginine dehydrogenase; FAD, imino-arginine, oxi 6e-04
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* Length = 351 Back     alignment and structure
 Score =  111 bits (279), Expect = 1e-30
 Identities = 52/146 (35%), Positives = 73/146 (50%), Gaps = 15/146 (10%)

Query: 11  LQVWAPWLSHFYYL-------DYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILE 63
           ++V APW+ HF              YIIP +   VTLGG     ++S   +  D  +I E
Sbjct: 203 MKVDAPWMKHFILTHDPERGIYNSPYIIPGTQT-VTLGGIFQLGNWSELNNIQDHNTIWE 261

Query: 64  RCYSLLPRLEEAPVLYEWCGLRPHRSLVRVEIEQI----GRLKVIHNYGHGGYGVTTAPG 119
            C  L P L+ A ++ E  G RP R  +R+E EQ+       +VIHNYGHGGYG+T   G
Sbjct: 262 GCCRLEPTLKNARIIGERTGFRPVRPQIRLEREQLRTGPSNTEVIHNYGHGGYGLTIHWG 321

Query: 120 TSRYAVQLVKQALD--PTSSL-KSKL 142
            +  A +L  + L+    S +  S L
Sbjct: 322 CALEAAKLFGRILEEKKLSRMPPSHL 347
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* Length = 363 Back     alignment and structure
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Length = 382 Back     alignment and structure
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Length = 381 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query142
3g3e_A351 D-amino-acid oxidase; FAD, flavoprotein, oxidoredu 99.91
1c0p_A363 D-amino acid oxidase; alpha-beta-alpha motif, flav 99.9
3nyc_A381 D-arginine dehydrogenase; FAD, imino-arginine, oxi 99.88
1y56_B382 Sarcosine oxidase; dehydrogenase, protein-protein 99.87
2gf3_A389 MSOX, monomeric sarcosine oxidase; flavoprotein ox 99.87
3pvc_A689 TRNA 5-methylaminomethyl-2-thiouridine biosynthes 99.86
3axb_A448 Putative oxidoreductase; dinucleotide-binding fold 99.86
1ryi_A382 Glycine oxidase; flavoprotein, protein-inhibitor c 99.86
3dme_A369 Conserved exported protein; structural genomics, P 99.85
3ps9_A676 TRNA 5-methylaminomethyl-2-thiouridine biosynthes 99.85
2gag_B405 Heterotetrameric sarcosine oxidase beta-subunit; f 99.82
2uzz_A372 N-methyl-L-tryptophan oxidase; N-methyltryptophan 99.82
3c4n_A405 Uncharacterized protein DR_0571; alpha-beta protei 99.79
2oln_A397 NIKD protein; flavoprotein, rossmann fold, oxidore 99.77
3dje_A438 Fructosyl amine: oxygen oxidoreductase; fructosyl- 99.76
1pj5_A 830 N,N-dimethylglycine oxidase; channelling, FAD bind 99.64
2qcu_A 501 Aerobic glycerol-3-phosphate dehydrogenase; glycer 99.57
2rgh_A 571 Alpha-glycerophosphate oxidase; flavoprotein oxida 99.47
3da1_A 561 Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 99.38
3cgv_A397 Geranylgeranyl reductase related protein; NP_39399 96.28
3atr_A 453 Conserved archaeal protein; saturating double bond 94.57
3oz2_A397 Digeranylgeranylglycerophospholipid reductase; str 93.8
3i6d_A470 Protoporphyrinogen oxidase; protein-inhibitor comp 91.52
3nix_A421 Flavoprotein/dehydrogenase; structural genomics, P 90.49
2weu_A 511 Tryptophan 5-halogenase; regioselectivity, antifun 89.88
2ivd_A478 PPO, PPOX, protoporphyrinogen oxidase; porphyrin b 85.14
3ka7_A425 Oxidoreductase; structural genomics, PSI-2, protei 84.08
2gmh_A 584 Electron transfer flavoprotein-ubiquinone oxidored 81.99
3lov_A475 Protoporphyrinogen oxidase; structural genomics, J 81.96
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* Back     alignment and structure
Probab=99.91  E-value=4.1e-24  Score=165.72  Aligned_cols=130  Identities=35%  Similarity=0.528  Sum_probs=113.0

Q ss_pred             eeeccceEEEEeCCCcceEEEe-------CCeEEEEEccCCeEEEccceecCCCCCCCCHHHHHHHHHHHHhhCCCCCCC
Q psy5260           3 CLLVCSTPLQVWAPWLSHFYYL-------DYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEA   75 (142)
Q Consensus         3 ~~p~rGqv~~~~~p~~~~~i~~-------~~~~y~~p~~~g~~~iG~t~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~   75 (142)
                      +.|+|||++.+++|.+++.++.       +...|++|+.+ ++++|++.+..+++..++++..+++++.+.+++|.+.+.
T Consensus       195 l~p~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~-~~~iGg~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~  273 (351)
T 3g3e_A          195 LQPGRGQIMKVDAPWMKHFILTHDPERGIYNSPYIIPGTQ-TVTLGGIFQLGNWSELNNIQDHNTIWEGCCRLEPTLKNA  273 (351)
T ss_dssp             CEEEEEEEEEEECTTCCSEEEECCTTTCTTCSCEEEECSS-CEEEECCCEETCCCCSCCHHHHHHHHHHHHHHCGGGGGC
T ss_pred             eeecCCcEEEEeCCCcceEEEeccccCCCCceeEEEeCCC-cEEEeeeeecCCCCCCCCHHHHHHHHHHHHHhCCCccCC
Confidence            6899999999998766655541       23579999988 899999998877888889999999999999999999989


Q ss_pred             ceeeeeEeeecCCCC-ce----eeEeeeCcceEEEEeccCCCccchhHHHHHHHHHHHHhhcCC
Q psy5260          76 PVLYEWCGLRPHRSL-VR----VEIEQIGRLKVIHNYGHGGYGVTTAPGTSRYAVQLVKQALDP  134 (142)
Q Consensus        76 ~v~~~w~G~Rp~t~D-p~----ig~~~~~~~~l~~~~G~gg~G~t~ap~~a~~la~~i~g~~~~  134 (142)
                      ++.+.|+|+||+|+| |+    ||.. ++.+|+|+++||+|+|+++||++|+.+|++|.+.+.+
T Consensus       274 ~i~~~w~G~r~~t~D~p~~~~~ig~~-~~~~~~~~~~G~~g~G~~~ap~~g~~la~li~~~~~~  336 (351)
T 3g3e_A          274 RIIGERTGFRPVRPQIRLEREQLRTG-PSNTEVIHNYGHGGYGLTIHWGCALEAAKLFGRILEE  336 (351)
T ss_dssp             EEEEEEEEEEEECSSCEEEEEEECCS-SSCEEEEEEECCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEeeeeEeeCCCCCCccceeeeccCC-CCCCeEEEEeCCCcchHhhhHHHHHHHHHHHHHHHHh
Confidence            999999999999999 64    4432 3468999999999999999999999999999998764
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* Back     alignment and structure
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Back     alignment and structure
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Back     alignment and structure
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Back     alignment and structure
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* Back     alignment and structure
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Back     alignment and structure
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Back     alignment and structure
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Back     alignment and structure
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* Back     alignment and structure
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* Back     alignment and structure
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Back     alignment and structure
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} Back     alignment and structure
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Back     alignment and structure
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* Back     alignment and structure
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Back     alignment and structure
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* Back     alignment and structure
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* Back     alignment and structure
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} Back     alignment and structure
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Back     alignment and structure
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} Back     alignment and structure
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Back     alignment and structure
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Back     alignment and structure
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* Back     alignment and structure
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Back     alignment and structure
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Back     alignment and structure
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* Back     alignment and structure
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 142
d1ryia288 d.16.1.3 (A:219-306) Glycine oxidase ThiO {Bacillu 6e-15
d1c0pa295 d.16.1.3 (A:1194-1288) D-aminoacid oxidase {Rhodot 2e-14
d1kifa293 d.16.1.3 (A:195-287) D-aminoacid oxidase {Pig (Sus 2e-12
d1kifa1246 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N 6e-12
d1c0pa1268 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida 7e-11
>d1ryia2 d.16.1.3 (A:219-306) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 88 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 63.5 bits (154), Expect = 6e-15
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 11 LQVWAPWLSHFYYLDYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLP 70
          +      L+   Y D   YI+P  +G + +G       +S         S++++  ++LP
Sbjct: 11 VWNDDIPLTKTLYHD-HCYIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLP 69

Query: 71 RLEEAPVLYEWCGLRP 86
           ++   V   W GLRP
Sbjct: 70 AIQNMKVDRFWAGLRP 85
>d1c0pa2 d.16.1.3 (A:1194-1288) D-aminoacid oxidase {Rhodotorula gracilis [TaxId: 5286]} Length = 95 Back     information, alignment and structure
>d1kifa2 d.16.1.3 (A:195-287) D-aminoacid oxidase {Pig (Sus scrofa) [TaxId: 9823]} Length = 93 Back     information, alignment and structure
>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246 Back     information, alignment and structure
>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query142
d1ryia288 Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} 99.85
d1kifa293 D-aminoacid oxidase {Pig (Sus scrofa) [TaxId: 9823 99.85
d1c0pa295 D-aminoacid oxidase {Rhodotorula gracilis [TaxId: 99.81
d1pj5a3119 N,N-dimethylglycine oxidase {Arthrobacter globifor 97.18
d1kifa1246 D-aminoacid oxidase, N-terminal domain {Pig (Sus s 97.07
d1c0pa1268 D-aminoacid oxidase, N-terminal domain {Rhodotorul 96.98
d1ryia1276 Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} 96.73
d2gf3a1281 Sarcosine oxidase {Bacillus sp., strain b0618 [Tax 95.19
d2gf3a2104 Sarcosine oxidase {Bacillus sp., strain b0618 [Tax 93.07
>d1ryia2 d.16.1.3 (A:219-306) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.85  E-value=1.8e-21  Score=123.05  Aligned_cols=86  Identities=27%  Similarity=0.487  Sum_probs=78.0

Q ss_pred             eeeccceEEEEeCCC--cceEEEeCCeEEEEEccCCeEEEccceecCCCCCCCCHHHHHHHHHHHHhhCCCCCCCceeee
Q psy5260           3 CLLVCSTPLQVWAPW--LSHFYYLDYDVYIIPHSNGAVTLGGCRHYDSYSRDISRHDTASILERCYSLLPRLEEAPVLYE   80 (142)
Q Consensus         3 ~~p~rGqv~~~~~p~--~~~~i~~~~~~y~~p~~~g~~~iG~t~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~v~~~   80 (142)
                      ++|+|||++.++.+.  +.+.++.+ +.|++|+.+|.++||+|++.+++|..++++..++|++++.+++|.+.+++++++
T Consensus         1 l~PvKGq~l~v~~~~~~~~~~i~~~-~~yiip~~~g~~~iG~T~e~~~~d~~~~~~~~~~l~~~a~~~~P~l~~~~v~~~   79 (88)
T d1ryia2           1 FLPVKGECLSVWNDDIPLTKTLYHD-HCYIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRF   79 (88)
T ss_dssp             CEEEEEEEEEEECCSSCCCSEEEET-TEEEEECTTSEEEEECCCEETCCCCSCCHHHHHHHHHHHHHHCGGGGGSEEEEE
T ss_pred             CCCCCcEEEEEECCCCccCCEEeCC-CEEEEECCCCCEEEccEEEECCCCCCCCHHHHHHHHHHHHHHCCCcCCCcEeEE
Confidence            479999999999753  55666665 479999999999999999999999999999999999999999999999999999


Q ss_pred             eEeeecCCC
Q psy5260          81 WCGLRPHRS   89 (142)
Q Consensus        81 w~G~Rp~t~   89 (142)
                      |+|+||.|.
T Consensus        80 waGlRP~t~   88 (88)
T d1ryia2          80 WAGLRPGTK   88 (88)
T ss_dssp             EEEEEEECS
T ss_pred             EEeeCCCCC
Confidence            999999874
>d1kifa2 d.16.1.3 (A:195-287) D-aminoacid oxidase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1c0pa2 d.16.1.3 (A:1194-1288) D-aminoacid oxidase {Rhodotorula gracilis [TaxId: 5286]} Back     information, alignment and structure
>d1pj5a3 d.16.1.5 (A:220-338) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Back     information, alignment and structure
>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Back     information, alignment and structure
>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Back     information, alignment and structure
>d2gf3a2 d.16.1.3 (A:218-321) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Back     information, alignment and structure