Psyllid ID: psy5266

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
Protein Sequence
TATDYYQRDLTGTPGQVHLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRGGT
Secondary Structure (PSIPRED)
ccccHHHHHccccccEEEEEEEccccccccccccccccHHHHHHHHHHccccEEEEEccccHHHHccccHHHHHccccccEEEEccccccccHHHHHHHHHccccEEEEccccccccccccccccccccccccHHcHHHHHHHHHHHHHHHccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHEEEEccEEEEEEccccHHHHHHcccEccHHHHHHHccEEEEcccccccccccEcHHHHHHccccEEEEEcccHHHEcHHHHHHHHHHccEEEEEEcccccccccccccccccccEEEccccHHHHHHHHHcHHcccccHHHccHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
tatdyyqrdltgtpgqVHLIVCVLIRYHvdltggskQVYLILVIRTRSAQSDFIFVTCALTKDTEQLigrkqfslmkPTAILintsrgglldQEALVEFLRDkkiggagldvmipeplpadhplvqldncgngllDQEALVEFLRDkkiggagldvmipepmpadhplvqldnceirggt
Flexible Loop (DISEMBL)
tatdyyqrdltgtpgqVHLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILIntsrggllDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNGLLDQEALVEFLRDKKIGGAGLDVMIPEpmpadhplvqldnceirggt
Low Complexity Region (SEG)
TATDYYQRDLTGTPGQVHLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRGGT
Disordered region (IsUnstruct)
*****YQRDLTGTPGQVHLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNGLLDQEALVEFLRDKKIGGAGLDVMIP*********************
Disordered Region (DISOPRED)
***DYYQRDLTGTPGQVHLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEI*G**
Disordered Region (DISEMBL)
TATDYYQRDLTGTPGQVHLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRGGT
Disordered Region (DISPRO)
**TDYYQRDLTGTPGQVHLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCE*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
TATDYYQRDLTGTPGQVHLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRGGT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	180	2.2.26 [Sep-21-2011]
Q9UBQ7	328	Glyoxylate reductase/hydr	yes	N/A	0.461	0.253	0.530	4e-18
C6DJ88	320	Glyoxylate/hydroxypyruvat	yes	N/A	0.45	0.253	0.543	5e-18
Q91Z53	328	Glyoxylate reductase/hydr	yes	N/A	0.461	0.253	0.530	7e-18
Q6DB24	320	Glyoxylate/hydroxypyruvat	yes	N/A	0.45	0.253	0.530	2e-17
B1L765	332	Glyoxylate reductase OS=K	yes	N/A	0.45	0.243	0.493	2e-16
P58000	323	Glyoxylate/hydroxypyruvat	N/A	N/A	0.45	0.250	0.493	3e-16
O32264	325	Probable 2-ketogluconate	yes	N/A	0.45	0.249	0.493	3e-16
Q663W4	326	Glyoxylate/hydroxypyruvat	yes	N/A	0.45	0.248	0.481	2e-15
A4TGN1	326	Glyoxylate/hydroxypyruvat	yes	N/A	0.45	0.248	0.481	2e-15
A9R4G6	326	Glyoxylate/hydroxypyruvat	yes	N/A	0.45	0.248	0.481	2e-15

>sp|Q9UBQ7|GRHPR_HUMAN Glyoxylate reductase/hydroxypyruvate reductase OS=Homo sapiens GN=GRHPR PE=1 SV=1

 Score = 90.9 bits (224), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 44/83 (53%), Positives = 55/83 (66%)

Query: 48  SAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGG 107
           +AQSDFI V C+LT  TE L  +  F  MK TA+ IN SRG +++Q+ L + L   KI  
Sbjct: 206 AAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAA 265

Query: 108 AGLDVMIPEPLPADHPLVQLDNC 130
           AGLDV  PEPLP +HPL+ L NC
Sbjct: 266 AGLDVTSPEPLPTNHPLLTLKNC 288

Enzyme with hydroxy-pyruvate reductase, glyoxylate reductase and D-glycerate dehydrogenase enzymatic activities. Reduces hydroxypyruvate to D-glycerate, glyoxylate to glycolate oxidizes D-glycerate to hydroxypyruvate.
Homo sapiens (taxid: 9606)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 8EC: 1

>sp|C6DJ88|GHRB_PECCP Glyoxylate/hydroxypyruvate reductase B OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=ghrB PE=3 SV=1

 Score = 90.5 bits (223), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 44/81 (54%), Positives = 57/81 (70%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           A+SDF+ +T  LT +T  LIGR+Q + MKP+AILIN  RG ++D++AL E L    I GA
Sbjct: 195 AESDFLCITLPLTTETHHLIGREQLAKMKPSAILINIGRGAVVDEDALTEALVKGTIQGA 254

Query: 109 GLDVMIPEPLPADHPLVQLDN 129
           GLDV + EPLP D PL+ L N
Sbjct: 255 GLDVFVKEPLPVDSPLLDLPN 275

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively.

Pectobacterium carotovorum subsp. carotovorum (strain PC1) (taxid: 561230)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

>sp|Q91Z53|GRHPR_MOUSE Glyoxylate reductase/hydroxypyruvate reductase OS=Mus musculus GN=Grhpr PE=1 SV=1

 Score = 90.1 bits (222), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 44/83 (53%), Positives = 55/83 (66%)

Query: 48  SAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGG 107
           +A+SDFI V+C+LT DT  L  +  F  MK TAI IN SRG +++QE L + L   +I  
Sbjct: 206 AAESDFIVVSCSLTPDTMGLCSKDFFQKMKNTAIFINISRGDVVNQEDLYQALASGQIAA 265

Query: 108 AGLDVMIPEPLPADHPLVQLDNC 130
           AGLDV  PEPLP  HPL+ L NC
Sbjct: 266 AGLDVTTPEPLPPSHPLLTLKNC 288

Enzyme with hydroxy-pyruvate reductase, glyoxylate reductase and D-glycerate dehydrogenase enzymatic activities. Reduces hydroxypyruvate to D-glycerate, glyoxylate to glycolate oxidizes D-glycerate to hydroxypyruvate.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

>sp|Q6DB24|GHRB_ERWCT Glyoxylate/hydroxypyruvate reductase B OS=Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=ghrB PE=3 SV=2

 Score = 88.6 bits (218), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/81 (53%), Positives = 56/81 (69%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           A+SDF+ +T  LT +T  LIGR+Q + MKP+AILIN  RG ++D++AL E L    I  A
Sbjct: 195 AESDFLCITLPLTAETHHLIGREQLAKMKPSAILINIGRGAVVDEDALTEALVKGTIQAA 254

Query: 109 GLDVMIPEPLPADHPLVQLDN 129
           GLDV + EPLP D PL+ L N
Sbjct: 255 GLDVFVKEPLPVDSPLLDLPN 275

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively.

Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) (taxid: 218491)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

>sp|B1L765|GYAR_KORCO Glyoxylate reductase OS=Korarchaeum cryptofilum (strain OPF8) GN=gyaR PE=3 SV=1

 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 58/81 (71%)

Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
           +SDF+ +   LT++T  +IG +Q   MK TAIL+NTSRG ++DQ+AL + L++  I GAG
Sbjct: 201 ESDFVSLHVPLTEETYHMIGEEQLRRMKRTAILVNTSRGKVVDQKALYKALKEGWIAGAG 260

Query: 110 LDVMIPEPLPADHPLVQLDNC 130
           LDV   EP+P D PL++L+N 
Sbjct: 261 LDVFEQEPIPPDDPLLKLENV 281

Korarchaeum cryptofilum (strain OPF8) (taxid: 374847)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|P58000|GHRB_ENTAG Glyoxylate/hydroxypyruvate reductase B OS=Enterobacter agglomerans GN=tkrA PE=1 SV=1

 Score = 84.7 bits (208), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 56/81 (69%)

Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
           +SDF+ ++  LT+ T  +IGR+Q + MKP+AILIN  RG ++D++AL+  L+DK I  AG
Sbjct: 199 ESDFLCISLPLTEQTHHMIGREQLAKMKPSAILINAGRGPVVDEQALIAALKDKTIHAAG 258

Query: 110 LDVMIPEPLPADHPLVQLDNC 130
           LDV   EPLP D  L+ L N 
Sbjct: 259 LDVFEQEPLPVDSELLTLPNV 279

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively.

Enterobacter agglomerans (taxid: 549)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

>sp|O32264|TKRA_BACSU Probable 2-ketogluconate reductase OS=Bacillus subtilis (strain 168) GN=yvcT PE=3 SV=1

 Score = 84.3 bits (207), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 56/81 (69%)

Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
           QSDFI +   LT +T  +IG ++F LMK +AI +N SRG  +D++AL+  L++  I GAG
Sbjct: 203 QSDFILLITPLTDETYHMIGEREFKLMKNSAIFVNISRGKTVDEKALIRALQEGWIRGAG 262

Query: 110 LDVMIPEPLPADHPLVQLDNC 130
           LDV   EP+  D+PL+QLDN 
Sbjct: 263 LDVYEKEPVTQDNPLLQLDNV 283

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 5

>sp|Q663W4|GHRB_YERPS Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=ghrB PE=3 SV=1

 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 56/81 (69%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           A++DF+ +T  +T+ T  +IGR+Q + MK +AILIN  RG ++D++AL+  L+D  I  A
Sbjct: 199 AEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAA 258

Query: 109 GLDVMIPEPLPADHPLVQLDN 129
           GLDV   EPLP D PL+ L N
Sbjct: 259 GLDVFEQEPLPVDSPLLTLRN 279

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively.

Yersinia pseudotuberculosis (taxid: 633)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

>sp|A4TGN1|GHRB_YERPP Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis (strain Pestoides F) GN=ghrB PE=3 SV=1

 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 56/81 (69%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           A++DF+ +T  +T+ T  +IGR+Q + MK +AILIN  RG ++D++AL+  L+D  I  A
Sbjct: 199 AEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAA 258

Query: 109 GLDVMIPEPLPADHPLVQLDN 129
           GLDV   EPLP D PL+ L N
Sbjct: 259 GLDVFEQEPLPVDSPLLTLRN 279

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively.

Yersinia pestis (strain Pestoides F) (taxid: 386656)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

>sp|A9R4G6|GHRB_YERPG Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis bv. Antiqua (strain Angola) GN=ghrB PE=3 SV=1

 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 56/81 (69%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           A++DF+ +T  +T+ T  +IGR+Q + MK +AILIN  RG ++D++AL+  L+D  I  A
Sbjct: 199 AEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAA 258

Query: 109 GLDVMIPEPLPADHPLVQLDN 129
           GLDV   EPLP D PL+ L N
Sbjct: 259 GLDVFEQEPLPVDSPLLTLRN 279

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively.

Yersinia pestis bv. Antiqua (strain Angola) (taxid: 349746)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
67043779	325	putative glyoxylate reductase/hydroxypyr	0.661	0.366	0.456	4e-21
320166407	342	glyoxylate reductase/hydroxypyruvate red	0.45	0.236	0.555	2e-20
421056881	343	D-isomer specific 2-hydroxyacid dehydrog	0.45	0.236	0.580	4e-20
392963323	343	D-isomer specific 2-hydroxyacid dehydrog	0.45	0.236	0.580	4e-20
363745151	199	PREDICTED: probable 2-ketogluconate redu	0.45	0.407	0.580	5e-20
193659821	330	PREDICTED: glyoxylate reductase/hydroxyp	0.555	0.303	0.471	5e-20
427784185	360	Putative d-3-phosphoglycerate dehydrogen	0.45	0.225	0.592	6e-20
260837447	326	hypothetical protein BRAFLDRAFT_104160 [	0.455	0.251	0.560	7e-20
195117570	401	GI23165 [Drosophila mojavensis] gi|19391	0.683	0.306	0.432	8e-20
239789714	182	ACYPI003712 [Acyrthosiphon pisum]	0.444	0.439	0.587	1e-19

>gi|67043779|gb|AAY63988.1| putative glyoxylate reductase/hydroxypyruvate reductase [Lysiphlebus testaceipes]

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/127 (45%), Positives = 80/127 (62%), Gaps = 8/127 (6%)

Query: 44  IRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDK 103
           + T   +SDFI VT ALT +T ++ G+  F +MK TAI IN SRG ++DQ AL++ L++ 
Sbjct: 197 LNTLLTESDFIIVTIALTPETREMFGKSSFDMMKSTAIFINISRGEIVDQPALIDALKNN 256

Query: 104 KIGGAGLDVMIPEPLPADHPLVQLDNC------GNGLLDQEALVEFLRDKKIGGAGLDVM 157
           KI GAGLDVM PEP+P DH L++LDNC      G+  ++    +  +  K I  A LD  
Sbjct: 257 KIRGAGLDVMTPEPIPLDHELLKLDNCVLLPHIGSAAIEARREMSVITAKNI-SAVLDGH 315

Query: 158 IPEPMPA 164
            PE MP+
Sbjct: 316 -PENMPS 321

Source: Lysiphlebus testaceipes

Species: Lysiphlebus testaceipes

Genus: Lysiphlebus

Family: Braconidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|320166407|gb|EFW43306.1| glyoxylate reductase/hydroxypyruvate reductase [Capsaspora owczarzaki ATCC 30864]

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/81 (55%), Positives = 61/81 (75%)

Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
           +SDF+  TCALT DT+ +  +++F+LMKPTA  +N++RGG++DQ+AL E L   +I  AG
Sbjct: 222 ESDFVIATCALTDDTKLMFNKERFALMKPTATFVNSARGGIVDQDALYEALTTGRIARAG 281

Query: 110 LDVMIPEPLPADHPLVQLDNC 130
           LDV  PEPLP  HPL+ LDNC
Sbjct: 282 LDVTSPEPLPPKHPLLTLDNC 302

Source: Capsaspora owczarzaki ATCC 30864

Species: Capsaspora owczarzaki

Genus: Capsaspora

Class: Ichthyosporea

Superkingdom: Eukaryota

>gi|421056881|ref|ZP_15519798.1| D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein [Pelosinus fermentans B4] gi|421060503|ref|ZP_15522972.1| D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein [Pelosinus fermentans B3] gi|421064754|ref|ZP_15526597.1| D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein [Pelosinus fermentans A12] gi|421069298|ref|ZP_15530470.1| D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein [Pelosinus fermentans A11] gi|392438061|gb|EIW15923.1| D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein [Pelosinus fermentans B4] gi|392450318|gb|EIW27371.1| D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein [Pelosinus fermentans A11] gi|392456841|gb|EIW33575.1| D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein [Pelosinus fermentans B3] gi|392460438|gb|EIW36739.1| D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein [Pelosinus fermentans A12]

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 47/81 (58%), Positives = 61/81 (75%)

Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
           QSDFI +   L+KDT  LIG++  S MKPTA LINT+R GL+D+EALVE L++K+IGGA 
Sbjct: 223 QSDFISIHARLSKDTAGLIGKEALSWMKPTAYLINTARAGLIDEEALVEALKNKQIGGAA 282

Query: 110 LDVMIPEPLPADHPLVQLDNC 130
           LDV   EP+  +HPL+ +DN 
Sbjct: 283 LDVFWTEPIAKEHPLLTMDNV 303

Source: Pelosinus fermentans B4

Species: Pelosinus fermentans

Genus: Pelosinus

Family: Veillonellaceae

Order: Selenomonadales

Class: Negativicutes

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|392963323|ref|ZP_10328749.1| D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein [Pelosinus fermentans DSM 17108] gi|392451147|gb|EIW28141.1| D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein [Pelosinus fermentans DSM 17108]

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 47/81 (58%), Positives = 61/81 (75%)

Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
           QSDFI +   L+KDT  LIG++  S MKPTA LINT+R GL+D+EALVE L++K+IGGA 
Sbjct: 223 QSDFISIHARLSKDTAGLIGKEALSWMKPTAYLINTARAGLIDEEALVETLKNKQIGGAA 282

Query: 110 LDVMIPEPLPADHPLVQLDNC 130
           LDV   EP+  +HPL+ +DN 
Sbjct: 283 LDVFWTEPIAKEHPLLTMDNV 303

Source: Pelosinus fermentans DSM 17108

Species: Pelosinus fermentans

Genus: Pelosinus

Family: Veillonellaceae

Order: Selenomonadales

Class: Negativicutes

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|363745151|ref|XP_003643208.1| PREDICTED: probable 2-ketogluconate reductase-like, partial [Gallus gallus]

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 47/81 (58%), Positives = 61/81 (75%)

Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
           QSDF+ +   LT  TE+LIG+K+  LMKPTA LIN SRG ++DQ+ALVE L++K I  A 
Sbjct: 78  QSDFVMLVVNLTPQTEKLIGKKELGLMKPTATLINISRGAVIDQDALVEALQNKTIKAAA 137

Query: 110 LDVMIPEPLPADHPLVQLDNC 130
           LDV  PEPLP +HPL++L+N 
Sbjct: 138 LDVTYPEPLPRNHPLLKLNNV 158

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|193659821|ref|XP_001952060.1| PREDICTED: glyoxylate reductase/hydroxypyruvate reductase-like isoform 1 [Acyrthosiphon pisum] gi|328704005|ref|XP_003242374.1| PREDICTED: glyoxylate reductase/hydroxypyruvate reductase-like isoform 2 [Acyrthosiphon pisum]

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 50/106 (47%), Positives = 73/106 (68%), Gaps = 6/106 (5%)

Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
           QSDFI ++ AL +DT+ +I R++ + MK  A+L+N  RGGL+DQ+AL+E L++ +IGGAG
Sbjct: 210 QSDFIILSIALNEDTKFIINRERIAKMKSHAVLVNIGRGGLIDQDALIEALQENRIGGAG 269

Query: 110 LDVMIPEPLPADHPLVQLDNC------GNGLLDQEALVEFLRDKKI 149
           LDVM PEPLP D PL+++DN       G+  ++  A +  L  K I
Sbjct: 270 LDVMTPEPLPLDSPLMKMDNVVLLPHIGSASIETRAEMAILTAKNI 315

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427784185|gb|JAA57544.1| Putative d-3-phosphoglycerate dehydrogen [Rhipicephalus pulchellus]

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 48/81 (59%), Positives = 60/81 (74%)

Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
           QSD+I V CALT +T ++  ++ FS+MK TA LIN SRG ++DQ+AL E L   KI  AG
Sbjct: 241 QSDYIIVCCALTPETTKMFDKEAFSMMKSTASLINISRGPVVDQQALYEALSSGKIRSAG 300

Query: 110 LDVMIPEPLPADHPLVQLDNC 130
           LDVM PEPLP DHPL++L NC
Sbjct: 301 LDVMTPEPLPKDHPLLKLPNC 321

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260837447|ref|XP_002613715.1| hypothetical protein BRAFLDRAFT_104160 [Branchiostoma floridae] gi|229299104|gb|EEN69724.1| hypothetical protein BRAFLDRAFT_104160 [Branchiostoma floridae]

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 59/82 (71%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           ++SDF+  TCALT +T+++  +  FS MK +AI INTSRGG++ QE L E L+   I  A
Sbjct: 205 SESDFVIATCALTPETKEMFNKTVFSKMKSSAIFINTSRGGVVHQEDLYEALKSGTIKAA 264

Query: 109 GLDVMIPEPLPADHPLVQLDNC 130
           GLDV  PEPLP DHPL+ LDNC
Sbjct: 265 GLDVTTPEPLPTDHPLLTLDNC 286

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|195117570|ref|XP_002003320.1| GI23165 [Drosophila mojavensis] gi|193913895|gb|EDW12762.1| GI23165 [Drosophila mojavensis]

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 54/125 (43%), Positives = 78/125 (62%), Gaps = 2/125 (1%)

Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
           +SDF+ +   LT  T+ +     F+ MK TA+LIN +RG +++Q  L + LR  +I  AG
Sbjct: 240 KSDFVVIAAPLTAATQGVFNATAFNKMKNTAVLINIARGKIVNQNDLYDALRSNRIFAAG 299

Query: 110 LDVMIPEPLPADHPLVQLDNCGNGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLV 169
           LDV+ PEPLP +  L+ LDN    L++Q  L + L   +I  AGLDV  PEP+PAD  ++
Sbjct: 300 LDVVDPEPLPPNSKLLTLDNI--SLVNQVDLHKALSSGQIFAAGLDVTTPEPLPADSLIL 357

Query: 170 QLDNC 174
           +L NC
Sbjct: 358 KLPNC 362

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239789714|dbj|BAH71462.1| ACYPI003712 [Acyrthosiphon pisum]

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/80 (58%), Positives = 62/80 (77%)

Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
           +SDF+ V  AL +DT+ ++ R++ + MK  AIL+N  RG L+DQ+ALVE LR+K+I GAG
Sbjct: 62  RSDFVVVAAALNEDTKFIVSRERIATMKSNAILVNIGRGQLVDQDALVEALREKRIRGAG 121

Query: 110 LDVMIPEPLPADHPLVQLDN 129
           LDVM PEPLP DHPL+ LDN
Sbjct: 122 LDVMTPEPLPLDHPLMGLDN 141

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
UNIPROTKB|E1BRZ3	292	LOC100858664 "Uncharacterized	0.444	0.273	0.587	1.7e-20
UNIPROTKB|E1C320	292	LOC100858664 "Uncharacterized	0.444	0.273	0.587	1.7e-20
UNIPROTKB|E1C321	284	LOC100858664 "Uncharacterized	0.444	0.281	0.587	1.7e-20
UNIPROTKB|F1NX57	345	GRHPR "Uncharacterized protein	0.472	0.246	0.546	1.9e-19
FB|FBgn0037370	362	CG1236 [Drosophila melanogaste	0.444	0.220	0.562	3.5e-19
UNIPROTKB|E1BRZ4	272	LOC420808 "Uncharacterized pro	0.444	0.294	0.575	4e-19
UNIPROTKB|G3N069	328	LOC515578 "Uncharacterized pro	0.438	0.240	0.582	8.3e-19
UNIPROTKB|F1RZA1	324	LOC100157017 "Uncharacterized	0.444	0.246	0.575	1.1e-18
UNIPROTKB|E1BRZ5	272	LOC420807 "Uncharacterized pro	0.444	0.294	0.562	1.7e-18
UNIPROTKB|Q9UBQ7	328	GRHPR "Glyoxylate reductase/hy	0.461	0.253	0.530	1e-17

UNIPROTKB|E1BRZ3 LOC100858664 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 47/80 (58%), Positives = 61/80 (76%)

Query:    50 QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
             QSDF+ +   LT  TE+LIG+K+  LMKPTA LIN SRG ++DQ+ALVE L++K I  A 
Sbjct:   171 QSDFVMLVVNLTPQTEKLIGKKELGLMKPTATLINISRGAVIDQDALVEALQNKTIKAAA 230

Query:   110 LDVMIPEPLPADHPLVQLDN 129
             LDV  PEPLP +HPL++L+N
Sbjct:   231 LDVTYPEPLPRNHPLLKLNN 250

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

UNIPROTKB|E1C320 LOC100858664 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 47/80 (58%), Positives = 61/80 (76%)

Query:    50 QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
             QSDF+ +   LT  TE+LIG+K+  LMKPTA LIN SRG ++DQ+ALVE L++K I  A 
Sbjct:   171 QSDFVMLVVNLTPQTEKLIGKKELGLMKPTATLINISRGAVIDQDALVEALQNKTIKAAA 230

Query:   110 LDVMIPEPLPADHPLVQLDN 129
             LDV  PEPLP +HPL++L+N
Sbjct:   231 LDVTYPEPLPRNHPLLKLNN 250

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

UNIPROTKB|E1C321 LOC100858664 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 47/80 (58%), Positives = 61/80 (76%)

Query:    50 QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
             QSDF+ +   LT  TE+LIG+K+  LMKPTA LIN SRG ++DQ+ALVE L++K I  A 
Sbjct:   163 QSDFVMLVVNLTPQTEKLIGKKELGLMKPTATLINISRGAVIDQDALVEALQNKTIKAAA 222

Query:   110 LDVMIPEPLPADHPLVQLDN 129
             LDV  PEPLP +HPL++L+N
Sbjct:   223 LDVTYPEPLPRNHPLLKLNN 242

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

UNIPROTKB|F1NX57 GRHPR "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 47/86 (54%), Positives = 61/86 (70%)

Query:    46 TRSAQ-SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKK 104
             T+ AQ SDF+ VTCALT DT+ +  +  FS MK T++ INTSRG +++QE L + L   +
Sbjct:   220 TKLAQESDFVVVTCALTPDTQGMCNKDFFSRMKKTSVFINTSRGAVVNQEDLYDALVGGQ 279

Query:   105 IGGAGLDVMIPEPLPADHPLVQLDNC 130
             I  AGLDV  PEPLP DHPL++L NC
Sbjct:   280 IAAAGLDVTTPEPLPTDHPLLKLRNC 305

GO:0051287 "NAD binding" evidence=IEA

GO:0016618 "hydroxypyruvate reductase activity" evidence=IEA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0051259 "protein oligomerization" evidence=IEA

GO:0070402 "NADPH binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007588 "excretion" evidence=IEA

GO:0008465 "glycerate dehydrogenase activity" evidence=IEA

FB|FBgn0037370 CG1236 [Drosophila melanogaster (taxid:7227)]

 Score = 231 (86.4 bits), Expect = 3.5e-19, P = 3.5e-19
 Identities = 45/80 (56%), Positives = 58/80 (72%)

Query:    50 QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
             +SD I V CALT +T+++     F  MKP  ILINT+RGG++DQ+AL E L+ K+I  AG
Sbjct:   242 ESDLIVVCCALTPETKEIFNATAFQKMKPNCILINTARGGVVDQKALYEALKTKRILAAG 301

Query:   110 LDVMIPEPLPADHPLVQLDN 129
             LDV  PEPLP D PL++LDN
Sbjct:   302 LDVTTPEPLPIDDPLLKLDN 321

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

UNIPROTKB|E1BRZ4 LOC420808 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 46/80 (57%), Positives = 57/80 (71%)

Query:    50 QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
             Q+DF+ V  +LT  T +LIG+++  LMKPTA LIN SRG ++DQEALV  LR   I  A 
Sbjct:   161 QADFVMVVVSLTPQTHKLIGKREMELMKPTATLINISRGAVVDQEALVIALRSGVIRAAA 220

Query:   110 LDVMIPEPLPADHPLVQLDN 129
             LDV  PEPLP DHPL++L N
Sbjct:   221 LDVTYPEPLPRDHPLLKLKN 240

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

UNIPROTKB|G3N069 LOC515578 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 46/79 (58%), Positives = 57/79 (72%)

Query:    51 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGL 110
             SDF+ +  +LT  T+ LIG+++  LMKPTAILIN  RG L+DQEALVE L+   I  A L
Sbjct:   208 SDFVMLAVSLTPQTQGLIGKRELRLMKPTAILINIGRGLLVDQEALVEALQTGLIKAAAL 267

Query:   111 DVMIPEPLPADHPLVQLDN 129
             DV  PEPLP DHPL++L N
Sbjct:   268 DVTYPEPLPRDHPLLELKN 286

GO:0051287 "NAD binding" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

UNIPROTKB|F1RZA1 LOC100157017 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 46/80 (57%), Positives = 57/80 (71%)

Query:    50 QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
             QSDF+ +   LT  ++ LIGR++ SLMKPTA LIN  RG L+DQ+ALVE L+   I  A 
Sbjct:   204 QSDFVMLAVNLTPQSQGLIGRRELSLMKPTATLINVGRGLLVDQDALVEALQTGVIKAAA 263

Query:   110 LDVMIPEPLPADHPLVQLDN 129
             LDV  PEPLP DHPL++L N
Sbjct:   264 LDVTYPEPLPRDHPLLELKN 283

GO:0051287 "NAD binding" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

UNIPROTKB|E1BRZ5 LOC420807 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 45/80 (56%), Positives = 59/80 (73%)

Query:    50 QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
             Q+DF+ +   LT  T +LIG+++  LMKPTAILIN SRG ++DQ+ALVE L++K I  A 
Sbjct:   152 QADFVMLVVNLTPQTHKLIGKRELQLMKPTAILINISRGLVVDQDALVEALQNKVIKAAA 211

Query:   110 LDVMIPEPLPADHPLVQLDN 129
             LDV  PEPLP DH L++L N
Sbjct:   212 LDVTYPEPLPRDHLLLKLKN 231

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

UNIPROTKB|Q9UBQ7 GRHPR "Glyoxylate reductase/hydroxypyruvate reductase" [Homo sapiens (taxid:9606)]

 Score = 216 (81.1 bits), Expect = 1.0e-17, P = 1.0e-17
 Identities = 44/83 (53%), Positives = 55/83 (66%)

Query:    48 SAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGG 107
             +AQSDFI V C+LT  TE L  +  F  MK TA+ IN SRG +++Q+ L + L   KI  
Sbjct:   206 AAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAA 265

Query:   108 AGLDVMIPEPLPADHPLVQLDNC 130
             AGLDV  PEPLP +HPL+ L NC
Sbjct:   266 AGLDVTSPEPLPTNHPLLTLKNC 288

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IDA;NAS

GO:0008152 "metabolic process" evidence=NAS

GO:0007588 "excretion" evidence=IMP

GO:0016618 "hydroxypyruvate reductase activity" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0051287 "NAD binding" evidence=TAS

GO:0008465 "glycerate dehydrogenase activity" evidence=IDA

GO:0051259 "protein oligomerization" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0070402 "NADPH binding" evidence=IDA

GO:0005782 "peroxisomal matrix" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046487 "glyoxylate metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9UBQ7	GRHPR_HUMAN	1, ., 1, ., 1, ., 8, 1	0.5301	0.4611	0.2530	yes	N/A
C6DJ88	GHRB_PECCP	1, ., 1, ., 1, ., 8, 1	0.5432	0.45	0.2531	yes	N/A
Q6DB24	GHRB_ERWCT	1, ., 1, ., 1, ., 8, 1	0.5308	0.45	0.2531	yes	N/A
Q91Z53	GRHPR_MOUSE	1, ., 1, ., 1, ., 8, 1	0.5301	0.4611	0.2530	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	180
cd05301	309	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr	2e-42
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	5e-39
cd12171	310	cd12171, 2-Hacid_dh_10, Putative D-isomer specific	4e-38
cd12173	304	cd12173, PGDH_4, Phosphoglycerate dehydrogenases,	4e-35
cd12172	306	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat	5e-35
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	3e-34
COG1052	324	COG1052, LdhA, Lactate dehydrogenase and related d	3e-34
cd05299	312	cd05299, CtBP_dh, C-terminal binding protein (CtBP	3e-34
cd12162	307	cd12162, 2-Hacid_dh_4, Putative D-isomer specific	7e-34
cd12159	303	cd12159, 2-Hacid_dh_2, Putative D-isomer specific	8e-33
cd12175	311	cd12175, 2-Hacid_dh_11, Putative D-isomer specific	1e-32
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	2e-32
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	5e-32
cd12177	321	cd12177, 2-Hacid_dh_12, Putative D-isomer specific	8e-29
cd12169	308	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat	5e-28
PRK13581	526	PRK13581, PRK13581, D-3-phosphoglycerate dehydroge	2e-27
cd05303	301	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P	6e-27
cd12161	315	cd12161, GDH_like_1, Putative glycerate dehydrogen	6e-27
cd12167	330	cd12167, 2-Hacid_dh_8, Putative D-isomer specific	3e-24
cd12178	317	cd12178, 2-Hacid_dh_13, Putative D-isomer specific	3e-24
cd12155	314	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2	3e-24
cd12165	314	cd12165, 2-Hacid_dh_6, Putative D-isomer specific	6e-24
cd12168	321	cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l	2e-23
PRK15409	323	PRK15409, PRK15409, bifunctional glyoxylate/hydrox	2e-23
cd12183	328	cd12183, LDH_like_2, D-Lactate and related Dehydro	2e-23
PRK13243	333	PRK13243, PRK13243, glyoxylate reductase; Reviewed	5e-23
TIGR01327	525	TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas	2e-22
PRK06932	314	PRK06932, PRK06932, glycerate dehydrogenase; Provi	2e-22
cd12180	308	cd12180, 2-Hacid_dh_15, Putative D-isomer specific	1e-21
PRK06487	317	PRK06487, PRK06487, glycerate dehydrogenase; Provi	1e-21
cd12163	334	cd12163, 2-Hacid_dh_5, Putative D-isomer specific	3e-21
cd12187	329	cd12187, LDH_like_1, D-Lactate and related Dehydro	3e-20
PRK08410	311	PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P	6e-20
cd12174	305	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat	1e-18
cd12156	301	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase,	2e-18
cd12186	329	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr	3e-18
cd12185	322	cd12185, HGDH_LDH_like, Putative Lactate dehydroge	5e-18
cd12176	304	cd12176, PGDH_3, Phosphoglycerate dehydrogenases,	6e-18
cd12166	300	cd12166, 2-Hacid_dh_7, Putative D-isomer specific	1e-17
cd05302	348	cd05302, FDH, NAD-dependent Formate Dehydrogenase	2e-17
cd12164	306	cd12164, GDH_like_2, Putative glycerate dehydrogen	2e-17
cd01619	323	cd01619, LDH_like, D-Lactate and related Dehydroge	2e-17
PRK11790	409	PRK11790, PRK11790, D-3-phosphoglycerate dehydroge	4e-16
PRK07574	385	PRK07574, PRK07574, formate dehydrogenase; Provisi	5e-16
pfam00389	312	pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy	8e-15
cd12157	318	cd12157, PTDH, Thermostable Phosphite Dehydrogenas	2e-14
PLN02928	347	PLN02928, PLN02928, oxidoreductase family protein	9e-14
cd12160	310	cd12160, 2-Hacid_dh_3, Putative D-isomer specific	5e-13
cd12158	343	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh	4e-12
cd12184	330	cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro	3e-11
PLN02306	386	PLN02306, PLN02306, hydroxypyruvate reductase	2e-10
PLN03139	386	PLN03139, PLN03139, formate dehydrogenase; Provisi	3e-10
cd12179	306	cd12179, 2-Hacid_dh_14, Putative D-isomer specific	3e-08
PRK06436	303	PRK06436, PRK06436, glycerate dehydrogenase; Provi	5e-07
PRK00257	381	PRK00257, PRK00257, erythronate-4-phosphate dehydr	6e-07
cd12160	310	cd12160, 2-Hacid_dh_3, Putative D-isomer specific	1e-06
PRK12480	330	PRK12480, PRK12480, D-lactate dehydrogenase; Provi	1e-06
PRK08605	332	PRK08605, PRK08605, D-lactate dehydrogenase; Valid	3e-05
PRK15469	312	PRK15469, ghrA, bifunctional glyoxylate/hydroxypyr	1e-04
PRK15438	378	PRK15438, PRK15438, erythronate-4-phosphate dehydr	0.003

>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)

 Score =  143 bits (364), Expect = 2e-42
 Identities = 50/82 (60%), Positives = 64/82 (78%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           A+SDF+ + C LT +T  LI  ++ +LMKPTAILINT+RGG++D++ALVE L+  KI GA
Sbjct: 197 AESDFVSLHCPLTPETRHLINAERLALMKPTAILINTARGGVVDEDALVEALKSGKIAGA 256

Query: 109 GLDVMIPEPLPADHPLVQLDNC 130
           GLDV  PEPLPADHPL+ L N 
Sbjct: 257 GLDVFEPEPLPADHPLLTLPNV 278

D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score =  130 bits (330), Expect = 5e-39
 Identities = 43/82 (52%), Positives = 59/82 (71%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           A+SD + +   LT +T  LI  ++ +LMKP AILINT+RGGL+D++AL+  L+  +I GA
Sbjct: 87  AESDVVSLHLPLTPETRHLINAERLALMKPGAILINTARGGLVDEDALIAALKSGRIAGA 146

Query: 109 GLDVMIPEPLPADHPLVQLDNC 130
            LDV  PEPLP DHPL++L N 
Sbjct: 147 ALDVFEPEPLPPDHPLLELPNV 168

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  132 bits (334), Expect = 4e-38
 Identities = 45/82 (54%), Positives = 61/82 (74%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
            +SD + +   LT +T  +IG ++F+LMKPTA  INT+R GL+D++AL+E L + KIGGA
Sbjct: 200 KRSDVVSLHARLTPETRGMIGAEEFALMKPTAYFINTARAGLVDEDALIEALEEGKIGGA 259

Query: 109 GLDVMIPEPLPADHPLVQLDNC 130
            LDV   EPLPADHPL++LDN 
Sbjct: 260 ALDVFPEEPLPADHPLLKLDNV 281

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  124 bits (314), Expect = 4e-35
 Identities = 41/81 (50%), Positives = 55/81 (67%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           A++DFI +   LT +T  LI  ++ + MKP AILINT+RGG++D+ AL + L+  KI GA
Sbjct: 191 AEADFISLHTPLTPETRGLINAEELAKMKPGAILINTARGGIVDEAALADALKSGKIAGA 250

Query: 109 GLDVMIPEPLPADHPLVQLDN 129
            LDV   EP PAD PL+ L N
Sbjct: 251 ALDVFEQEPPPADSPLLGLPN 271

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  124 bits (313), Expect = 5e-35
 Identities = 44/82 (53%), Positives = 56/82 (68%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
            +SDFI +   LT +T  LI   + +LMKP AILINT+RGGL+D+EAL E L+  +I GA
Sbjct: 195 KESDFISLHLPLTPETRHLINAAELALMKPGAILINTARGGLVDEEALYEALKSGRIAGA 254

Query: 109 GLDVMIPEPLPADHPLVQLDNC 130
            LDV   EP PAD PL++L N 
Sbjct: 255 ALDVFEEEPPPADSPLLELPNV 276

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score =  122 bits (308), Expect = 3e-34
 Identities = 36/82 (43%), Positives = 51/82 (62%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
            ++D++     LT +T  L   ++F+ MKP A+LIN  RG ++D++AL+E L   +I GA
Sbjct: 188 PEADYVVNALPLTPETRGLFNAERFAAMKPGAVLINVGRGSVVDEDALIEALESGRIAGA 247

Query: 109 GLDVMIPEPLPADHPLVQLDNC 130
            LDV   EPLPAD PL  L N 
Sbjct: 248 ALDVFEEEPLPADSPLWDLPNV 269

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

 Score =  122 bits (308), Expect = 3e-34
 Identities = 44/84 (52%), Positives = 60/84 (71%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           A+SD I + C LT +T  LI  ++ + MKP AIL+NT+RGGL+D++AL++ L+  KI GA
Sbjct: 199 AESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGA 258

Query: 109 GLDVMIPEPLPADHPLVQLDNCGN 132
           GLDV   EP   DHPL++LDN  N
Sbjct: 259 GLDVFENEPALFDHPLLRLDNFPN 282

Length = 324

>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

 Score =  122 bits (308), Expect = 3e-34
 Identities = 39/82 (47%), Positives = 53/82 (64%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           A+SD + + C LT +T  LI  +  +LMKP A L+NT+RGGL+D+ AL   L+  +I GA
Sbjct: 195 ARSDVVSLHCPLTPETRHLIDAEALALMKPGAFLVNTARGGLVDEAALARALKSGRIAGA 254

Query: 109 GLDVMIPEPLPADHPLVQLDNC 130
            LDV+  EP PAD PL+   N 
Sbjct: 255 ALDVLEEEPPPADSPLLSAPNV 276

The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312

>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  121 bits (305), Expect = 7e-34
 Identities = 43/83 (51%), Positives = 57/83 (68%), Gaps = 1/83 (1%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           AQSD I + C LT +T  LI  ++ + MKP AILINT+RGGL+D++AL + L   KI GA
Sbjct: 196 AQSDVISLHCPLTPETRNLINAEELAKMKPGAILINTARGGLVDEQALADALNSGKIAGA 255

Query: 109 GLDVMIPEPLPADHPLVQ-LDNC 130
           GLDV+  EP  AD+PL++   N 
Sbjct: 256 GLDVLSQEPPRADNPLLKAAPNL 278

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307

>gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  118 bits (298), Expect = 8e-33
 Identities = 36/82 (43%), Positives = 48/82 (58%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
             +D + +   LT +T  L+     + MKP A L+N +RG L+D +ALV+ LR  +I GA
Sbjct: 178 PDADHVVLAAPLTPETRHLVDAAALAAMKPHAWLVNVARGPLVDTDALVDALRSGEIAGA 237

Query: 109 GLDVMIPEPLPADHPLVQLDNC 130
            LDV  PEPLP  HPL  L N 
Sbjct: 238 ALDVTDPEPLPDGHPLWSLPNA 259

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303

>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  118 bits (297), Expect = 1e-32
 Identities = 44/81 (54%), Positives = 58/81 (71%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           A+SD + +   LT +T  LIG ++ + MKP AILINT+RGGL+D+EAL+  LR   + GA
Sbjct: 196 AESDVVSLHVPLTPETRHLIGAEELAAMKPGAILINTARGGLVDEEALLAALRSGHLAGA 255

Query: 109 GLDVMIPEPLPADHPLVQLDN 129
           GLDV   EPLP D PL++LDN
Sbjct: 256 GLDVFWQEPLPPDDPLLRLDN 276

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score =  117 bits (296), Expect = 2e-32
 Identities = 44/82 (53%), Positives = 60/82 (73%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           AQSD + +   LT +T  LI  ++ +LMKP A+L+NT+RGGL+D++AL+  L+  KI GA
Sbjct: 193 AQSDVVVLHLPLTPETRHLINEEELALMKPGAVLVNTARGGLVDEDALLRALKSGKIAGA 252

Query: 109 GLDVMIPEPLPADHPLVQLDNC 130
            LDV  PEPLPADHPL++L N 
Sbjct: 253 ALDVFEPEPLPADHPLLELPNV 274

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score =  116 bits (293), Expect = 5e-32
 Identities = 39/81 (48%), Positives = 53/81 (65%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           A++D + +   LT +T  LI  ++ + MKP AILIN +RGG++D++AL+  L   KI GA
Sbjct: 196 AEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGA 255

Query: 109 GLDVMIPEPLPADHPLVQLDN 129
            LDV   EPLPAD PL  L N
Sbjct: 256 ALDVFEEEPLPADSPLWDLPN 276

Length = 324

>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  108 bits (271), Expect = 8e-29
 Identities = 42/82 (51%), Positives = 57/82 (69%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           A+SD I +   LT++T  +I  K FS MK   IL+NT+RG L+D+EAL+E L+  KI GA
Sbjct: 201 AESDIISLHAPLTEETYHMINEKAFSKMKKGVILVNTARGELIDEEALIEALKSGKIAGA 260

Query: 109 GLDVMIPEPLPADHPLVQLDNC 130
           GLDV+  EP+ ADHPL+  +N 
Sbjct: 261 GLDVLEEEPIKADHPLLHYENV 282

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321

>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases

 Score =  105 bits (265), Expect = 5e-28
 Identities = 42/81 (51%), Positives = 54/81 (66%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           A SD + +   L+  T  L+G +  +LMKPTA+L+NTSRG L+D+ AL+  LR  +I GA
Sbjct: 196 ATSDVVSLHLVLSDRTRGLVGAEDLALMKPTALLVNTSRGPLVDEGALLAALRAGRIAGA 255

Query: 109 GLDVMIPEPLPADHPLVQLDN 129
            LDV   EPLPADHPL  L N
Sbjct: 256 ALDVFDVEPLPADHPLRGLPN 276

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308

>gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  106 bits (268), Expect = 2e-27
 Identities = 37/81 (45%), Positives = 52/81 (64%), Gaps = 1/81 (1%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           A++DFI +   LT +T  LIG ++ + MKP   +IN +RGG++D+ AL E L+  K+ GA
Sbjct: 193 ARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGA 252

Query: 109 GLDVMIPEPLPADHPLVQLDN 129
            LDV   EP P D PL +L N
Sbjct: 253 ALDVFEKEP-PTDSPLFELPN 272

Length = 526

>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains

 Score =  103 bits (258), Expect = 6e-27
 Identities = 39/80 (48%), Positives = 54/80 (67%), Gaps = 1/80 (1%)

Query: 51  SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGL 110
           SDFI +   LT +T+ +I +K+  LMK  AI+INTSRGG++D+EAL+E L+  K+ GA L
Sbjct: 194 SDFISLHVPLTPETKHMINKKELELMKDGAIIINTSRGGVIDEEALLEALKSGKLAGAAL 253

Query: 111 DVMIPEPLPADHPLVQLDNC 130
           DV   EP P    L++L N 
Sbjct: 254 DVFENEPPPG-SKLLELPNV 272

Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301

>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  103 bits (258), Expect = 6e-27
 Identities = 41/84 (48%), Positives = 59/84 (70%), Gaps = 3/84 (3%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           A+SD + +   L  +T+ LIG+++ +LMK +AILINT+RG ++D EAL + L + KI GA
Sbjct: 196 AESDIVSLHLPLNDETKGLIGKEKLALMKESAILINTARGPVVDNEALADALNEGKIAGA 255

Query: 109 GLDV--MIPEPLPADHPLVQLDNC 130
           G+DV  M P PLPAD+PL+   N 
Sbjct: 256 GIDVFDMEP-PLPADYPLLHAPNT 278

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315

>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 96.1 bits (240), Expect = 3e-24
 Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 1/81 (1%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           A+SD + +   LT +T  +I  +  +LM+  A  INT+RG L+D+ AL+  LR  ++  A
Sbjct: 203 ARSDVVSLHAPLTPETRGMIDARLLALMRDGATFINTARGALVDEAALLAELRSGRL-RA 261

Query: 109 GLDVMIPEPLPADHPLVQLDN 129
            LDV  PEPLP D PL  L N
Sbjct: 262 ALDVTDPEPLPPDSPLRTLPN 282

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330

>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 95.8 bits (239), Expect = 3e-24
 Identities = 37/81 (45%), Positives = 50/81 (61%), Gaps = 1/81 (1%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
            +SDF+ +    T +T  LI    F LMKPTA LIN +RG L+D++ALV+ L+  +I GA
Sbjct: 198 KESDFVSLHAPYTPETHHLIDAAAFKLMKPTAYLINAARGPLVDEKALVDALKTGEIAGA 257

Query: 109 GLDVMIPEPLPADHPLVQLDN 129
            LDV   EP  +   L +LDN
Sbjct: 258 ALDVFEFEPEVSPE-LKKLDN 277

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317

>gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family

 Score = 95.7 bits (239), Expect = 3e-24
 Identities = 35/81 (43%), Positives = 48/81 (59%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
            ++D +     LT++T  L     F  MK  A+ IN  RG  +D++AL+E L++K+I GA
Sbjct: 188 KEADIVVNVLPLTEETHHLFDEAFFEQMKKGALFINVGRGPSVDEDALIEALKNKQIRGA 247

Query: 109 GLDVMIPEPLPADHPLVQLDN 129
            LDV   EPLP D PL  LDN
Sbjct: 248 ALDVFEEEPLPKDSPLWDLDN 268

Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 95.4 bits (238), Expect = 6e-24
 Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 6/87 (6%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
            Q+D + V   LTK T  LIG  + + MKP AIL+N  RG ++D+EAL E L+++ I GA
Sbjct: 190 EQADVVVVALPLTKQTRGLIGAAELAAMKPGAILVNVGRGPVVDEEALYEALKERPIAGA 249

Query: 109 GLDVMIPEP------LPADHPLVQLDN 129
            +DV    P       P+ +P  +L N
Sbjct: 250 AIDVWWRYPSRGDPVAPSRYPFHELPN 276

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases

 Score = 94.2 bits (235), Expect = 2e-23
 Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 4/83 (4%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           AQSD + + C LT  T  LI +K+F+ MK   I++NT+RG ++D++ALV+ L   K+  A
Sbjct: 208 AQSDVVSLNCPLTAATRHLINKKEFAKMKDGVIIVNTARGAVIDEDALVDALESGKVASA 267

Query: 109 GLDVMIPEPLP----ADHPLVQL 127
           GLDV   EP         P V L
Sbjct: 268 GLDVFENEPEVNPGLLKMPNVTL 290

D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321

>gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

 Score = 94.0 bits (234), Expect = 2e-23
 Identities = 36/81 (44%), Positives = 50/81 (61%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
            +SDF+ +   LT +T  L G +QF+ MK +AI IN  RG ++D+ AL+  L+  +I  A
Sbjct: 199 QESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAA 258

Query: 109 GLDVMIPEPLPADHPLVQLDN 129
           GLDV   EPL  D PL+ L N
Sbjct: 259 GLDVFEQEPLSVDSPLLSLPN 279

Length = 323

>gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score = 93.7 bits (234), Expect = 2e-23
 Identities = 34/64 (53%), Positives = 44/64 (68%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           A+SD I + C LT +T  LI  +  + MK   +LINTSRGGL+D +AL+E L+  KIGG 
Sbjct: 196 AESDIISLHCPLTPETHHLINAETIAKMKDGVMLINTSRGGLIDTKALIEALKSGKIGGL 255

Query: 109 GLDV 112
           GLDV
Sbjct: 256 GLDV 259

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328

>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed

 Score = 92.9 bits (231), Expect = 5e-23
 Identities = 37/80 (46%), Positives = 53/80 (66%), Gaps = 1/80 (1%)

Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
           +SDF+ +   LTK+T  +I  ++  LMKPTAIL+NT+RG ++D +ALV+ L++  I GAG
Sbjct: 204 ESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAG 263

Query: 110 LDVMIPEPLPADHPLVQLDN 129
           LDV   EP   +  L  L N
Sbjct: 264 LDVFEEEPYY-NEELFSLKN 282

Length = 333

>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase

 Score = 92.8 bits (231), Expect = 2e-22
 Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 1/81 (1%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           A++DFI V   LT +T  LIG ++ + MK   I++N +RGG++D+ AL E L +  +  A
Sbjct: 192 ARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAA 251

Query: 109 GLDVMIPEPLPADHPLVQLDN 129
            LDV   EP P D+PL  LDN
Sbjct: 252 ALDVFEKEP-PTDNPLFDLDN 271

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525

>gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional

 Score = 91.0 bits (226), Expect = 2e-22
 Identities = 38/78 (48%), Positives = 55/78 (70%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
            Q+D + + C LT+ T+ LI  +  +LMKPTA LINT RG L+D++AL++ L + KI GA
Sbjct: 196 KQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGA 255

Query: 109 GLDVMIPEPLPADHPLVQ 126
            LDV++ EP   D+PL+Q
Sbjct: 256 ALDVLVKEPPEKDNPLIQ 273

Length = 314

>gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 88.9 bits (221), Expect = 1e-21
 Identities = 37/76 (48%), Positives = 46/76 (60%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           A+SD + +   LT +T  LI     +  KP   LIN +RGGL+DQEAL+E L   +I  A
Sbjct: 187 ARSDHLVLAAPLTPETRHLINADVLAQAKPGLHLINIARGGLVDQEALLEALDSGRISLA 246

Query: 109 GLDVMIPEPLPADHPL 124
            LDV  PEPLP  HPL
Sbjct: 247 SLDVTDPEPLPEGHPL 262

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308

>gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional

 Score = 89.0 bits (221), Expect = 1e-21
 Identities = 37/79 (46%), Positives = 53/79 (67%)

Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
           Q D + + C LT+ T  LIG ++ +LMKP A+LINT+RGGL+D++AL + LR   +GGA 
Sbjct: 197 QVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAA 256

Query: 110 LDVMIPEPLPADHPLVQLD 128
            DV+  EP    +PL+  D
Sbjct: 257 TDVLSVEPPVNGNPLLAPD 275

Length = 317

>gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 88.1 bits (219), Expect = 3e-21
 Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 48  SAQSDFIFVTCALTKDTEQLIGRKQFSLM-KPTAILINTSRGGLLDQEALVEFLRDKKIG 106
               D + V+  LT  T+ L+G ++F ++ K    + N +RG L+D +ALV  L   +I 
Sbjct: 208 RQDLDLLVVSLPLTPATKHLLGAEEFEILAKRKTFVSNIARGSLVDTDALVAALESGQIR 267

Query: 107 GAGLDVMIPEPLPADHPLVQLDNC 130
           GA LDV  PEPLPADHPL    N 
Sbjct: 268 GAALDVTDPEPLPADHPLWSAPNV 291

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334

>gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains

 Score = 85.4 bits (212), Expect = 3e-20
 Identities = 40/101 (39%), Positives = 54/101 (53%), Gaps = 20/101 (19%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
            +SD I +    T  T  LI R+ F+LMKP A+LINT+RG ++D EALV  L++ K+ GA
Sbjct: 192 QESDIISLHVPYTPQTHHLINRENFALMKPGAVLINTARGAVVDTEALVRALKEGKLAGA 251

Query: 109 GLDV------MIPE--------------PLPADHPLVQLDN 129
           GLDV      +  E               L ADH L++  N
Sbjct: 252 GLDVLEQEEVLREEAELFREDVSPEDLKKLLADHALLRKPN 292

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional

 Score = 84.3 bits (209), Expect = 6e-20
 Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 1/86 (1%)

Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
            SD I +   L + T+ LI  K+  L+K  AILIN  RGG+++++ L + L +K I  AG
Sbjct: 196 TSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDI-YAG 254

Query: 110 LDVMIPEPLPADHPLVQLDNCGNGLL 135
           LDV+  EP+  +HPL+ + N    L+
Sbjct: 255 LDVLEKEPMEKNHPLLSIKNKEKLLI 280

Length = 311

>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score = 80.3 bits (199), Expect = 1e-18
 Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           A +D+I +   LT +T  LI  +  + MKP AIL+N +RG ++D+EAL+E L + K+GG 
Sbjct: 191 ATADYITLHVPLTDETRGLINAELLAKMKPGAILLNFARGEIVDEEALLEALDEGKLGGY 250

Query: 109 GLDVMIPEPLPADHPLV 125
             D   P  L    P V
Sbjct: 251 VTDFPEPALLGH-LPNV 266

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305

>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase

 Score = 79.8 bits (198), Expect = 2e-18
 Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           A+SD + V C     T  L+  +    + P  +L+N +RG ++D+ AL+  L++ +I GA
Sbjct: 191 AESDVLVVACPGGPATRHLVNAEVLEALGPDGVLVNVARGSVVDEAALIAALQEGRIAGA 250

Query: 109 GLDVMIPEPLPADHPLVQLDN 129
           GLDV   EP      L+ LDN
Sbjct: 251 GLDVFENEPNVPA-ALLDLDN 270

Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301

>gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains

 Score = 79.9 bits (198), Expect = 3e-18
 Identities = 29/65 (44%), Positives = 40/65 (61%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
            Q+D I +   LTK+   LI  + F+ MK  AIL+N +RGGL+D +AL++ L   KI GA
Sbjct: 197 KQADIISLHVPLTKENHHLINAEAFAKMKDGAILVNAARGGLVDTKALIDALDSGKIAGA 256

Query: 109 GLDVM 113
            LD  
Sbjct: 257 ALDTY 261

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains

 Score = 79.2 bits (196), Expect = 5e-18
 Identities = 31/64 (48%), Positives = 42/64 (65%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
            +SD I +   LT++T  LI ++  + MK   I+INT+RG L+D EAL+E L   KIGGA
Sbjct: 194 KESDIITLHTPLTEETYHLINKESIAKMKDGVIIINTARGELIDTEALIEGLESGKIGGA 253

Query: 109 GLDV 112
            LDV
Sbjct: 254 ALDV 257

This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322

>gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score = 78.8 bits (195), Expect = 6e-18
 Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 4/85 (4%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           A++DF+ +    T  T+ +IG ++ + MK  AILIN SRG ++D +AL E LR   + GA
Sbjct: 191 AEADFVTLHVPATPSTKNMIGAEEIAQMKKGAILINASRGTVVDIDALAEALRSGHLAGA 250

Query: 109 GLDVMIPEPL----PADHPLVQLDN 129
            +DV   EP     P   PL  L N
Sbjct: 251 AVDVFPEEPASNGEPFSSPLQGLPN 275

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 78.0 bits (193), Expect = 1e-17
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
           ++D + +   LT +T  L+  +  + M   A+L+N +RG ++D +ALV  L   ++  A 
Sbjct: 183 EADVVVLIVPLTDETRGLVDAEFLARMPDGALLVNVARGPVVDTDALVAELASGRL-RAA 241

Query: 110 LDVMIPEPLPADHPLVQLDNC 130
           LDV  PEPLP  HPL      
Sbjct: 242 LDVTDPEPLPPGHPLWSAPGV 262

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300

>gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH)

 Score = 77.8 bits (192), Expect = 2e-17
 Identities = 29/75 (38%), Positives = 43/75 (57%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           ++ D + + C L  +TE L  ++  S MK  A L+NT+RG + D+EA+ E L    + G 
Sbjct: 217 SKCDVVTINCPLHPETEGLFNKELLSKMKKGAYLVNTARGKICDREAVAEALESGHLAGY 276

Query: 109 GLDVMIPEPLPADHP 123
             DV  P+P P DHP
Sbjct: 277 AGDVWFPQPAPKDHP 291

NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348

>gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score = 77.2 bits (191), Expect = 2e-17
 Identities = 29/76 (38%), Positives = 40/76 (52%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           AQ+D +     LT +T  ++  +  + +   A LIN  RG  L +  L+  L    + GA
Sbjct: 185 AQTDILVCLLPLTPETRGILNAELLARLPRGAALINVGRGPHLVEADLLAALDSGHLSGA 244

Query: 109 GLDVMIPEPLPADHPL 124
            LDV   EPLPADHPL
Sbjct: 245 VLDVFEQEPLPADHPL 260

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score = 77.3 bits (191), Expect = 2e-17
 Identities = 31/64 (48%), Positives = 39/64 (60%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
             SD I +   LT +   +I  + F LMK   I+INT+RG L+D EAL+E L   KI GA
Sbjct: 195 KNSDIISLHVPLTPENHHMINEEAFKLMKKGVIIINTARGSLVDTEALIEALDSGKIFGA 254

Query: 109 GLDV 112
           GLDV
Sbjct: 255 GLDV 258

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323

>gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase; Provisional

 Score = 74.4 bits (184), Expect = 4e-16
 Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 4/85 (4%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           AQSD + +    T  T+ +IG ++ +LMKP AILIN SRG ++D +AL + L+   + GA
Sbjct: 202 AQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGA 261

Query: 109 GLDVMIPEPLPADH----PLVQLDN 129
            +DV   EP         PL  LDN
Sbjct: 262 AIDVFPVEPKSNGDPFESPLRGLDN 286

Length = 409

>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional

 Score = 74.3 bits (183), Expect = 5e-16
 Identities = 28/73 (38%), Positives = 41/73 (56%)

Query: 51  SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGL 110
            D + + C L  +TE L      S MK  + L+NT+RG ++D++A+V  L    + G   
Sbjct: 249 CDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAG 308

Query: 111 DVMIPEPLPADHP 123
           DV  P+P PADHP
Sbjct: 309 DVWFPQPAPADHP 321

Length = 385

>gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

 Score = 70.4 bits (173), Expect = 8e-15
 Identities = 27/91 (29%), Positives = 44/91 (48%)

Query: 40  LILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEF 99
           L+ ++     +SD +      T      I   +   M   A+ IN +RGG + +EA ++ 
Sbjct: 183 LLDLLLLDLKESDDLINLAPPTTMKTGHIIINEARGMLKDAVAINNARGGGVIEEAALDA 242

Query: 100 LRDKKIGGAGLDVMIPEPLPADHPLVQLDNC 130
           L ++ I  A LDV+  EP P + PL+ L N 
Sbjct: 243 LLEEGIAAAALDVVEEEPPPVNSPLLDLPNV 273

This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312

>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase

 Score = 69.2 bits (170), Expect = 2e-14
 Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 5/91 (5%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
             SDF+ +   LT DT  LI  +  + MKP A+L+N  RG ++D+ A+ E L+   +GG 
Sbjct: 198 ESSDFLVLALPLTPDTLHLINAEALAKMKPGALLVNPCRGSVVDEAAVAEALKSGHLGGY 257

Query: 109 GLDVMIPEPLP-ADHPLVQLDNCGNGLLDQE 138
             DV   E     D P     +    LLDQ 
Sbjct: 258 AADVFEMEDWARPDRP----RSIPQELLDQH 284

Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318

>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein

 Score = 67.4 bits (165), Expect = 9e-14
 Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 6/101 (5%)

Query: 29  VDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRG 88
           VD  GG + +Y          ++D + + C LTK+T  ++  +  S MK  A+L+N +RG
Sbjct: 211 VDEKGGHEDIYEFA------GEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARG 264

Query: 89  GLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDN 129
           GLLD +A++  L    +GG  +DV   EP   D P+++  N
Sbjct: 265 GLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPN 305

Length = 347

>gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 65.1 bits (159), Expect = 5e-13
 Identities = 24/64 (37%), Positives = 35/64 (54%)

Query: 61  TKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPA 120
           T  T   +  +  + +   A ++N  RG  +D++ALV  L   ++GGA LDV   EPLPA
Sbjct: 207 TPSTAHALDAEVLAALPKHAWVVNVGRGATVDEDALVAALESGRLGGAALDVTATEPLPA 266

Query: 121 DHPL 124
             PL
Sbjct: 267 SSPL 270

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains

 Score = 62.9 bits (154), Expect = 4e-12
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 4/73 (5%)

Query: 49  AQSDFIFVTCALTKD----TEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKK 104
           A++D I +   LT+D    T  L+     + +KP  ILIN SRG ++D +AL+  L+  K
Sbjct: 165 AEADIITLHVPLTRDGEHPTYHLLDEDFLAALKPGQILINASRGAVIDNQALLALLQRGK 224

Query: 105 IGGAGLDVMIPEP 117
                LDV   EP
Sbjct: 225 DLRVVLDVWENEP 237

D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343

>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains

 Score = 60.4 bits (147), Expect = 3e-11
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query: 49  AQSDFIFVTCALTK-DTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGG 107
            +SD I +     K   ++LI ++  S MK  AILINT+RG L D+EA++E L   K+ G
Sbjct: 196 KKSDIISLHVPYIKGKNDKLINKEFISKMKDGAILINTARGELQDEEAILEALESGKLAG 255

Query: 108 AGLDVMIPE 116
            G DV+  E
Sbjct: 256 FGTDVLNNE 264

(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330

>gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase

 Score = 58.3 bits (141), Expect = 2e-10
 Identities = 28/68 (41%), Positives = 42/68 (61%)

Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
           ++D I +   L K T  LI +++ +LMK  A+L+N SRG ++D+ ALVE L+   +   G
Sbjct: 236 EADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVG 295

Query: 110 LDVMIPEP 117
           LDV   EP
Sbjct: 296 LDVFEDEP 303

Length = 386

>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional

 Score = 57.6 bits (139), Expect = 3e-10
 Identities = 23/75 (30%), Positives = 42/75 (56%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
            + D + +   LT+ T  +  +++ + MK   +++N +RG ++D +A+ +      IGG 
Sbjct: 254 PKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGY 313

Query: 109 GLDVMIPEPLPADHP 123
           G DV  P+P P DHP
Sbjct: 314 GGDVWYPQPAPKDHP 328

Length = 386

>gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 21/65 (32%), Positives = 37/65 (56%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
            ++D + +   LT +T  ++ ++  S  K     INT+RG ++  + LV+ L+  KI GA
Sbjct: 188 KEADILSLHIPLTPETRGMVNKEFISSFKKPFYFINTARGKVVVTKDLVKALKSGKILGA 247

Query: 109 GLDVM 113
            LDV+
Sbjct: 248 CLDVL 252

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional

 Score = 48.0 bits (114), Expect = 5e-07
 Identities = 17/54 (31%), Positives = 32/54 (59%)

Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDK 103
           +SDF+ ++  LT +T  +I  K  SL +    +IN +R  ++D+  ++ FLR+ 
Sbjct: 173 KSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNH 226

Length = 303

>gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase; Validated

 Score = 48.1 bits (115), Expect = 6e-07
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 49  AQSDFIFVTCALTKD----TEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKK 104
            + D I +   LTK+    T  L+     + ++P A LIN SRG ++D +AL E L   +
Sbjct: 166 EECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGE 225

Query: 105 IGGAGLDVMIPEP 117
              A LDV   EP
Sbjct: 226 DLDAVLDVWEGEP 238

Length = 381

>gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 129 NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPL 168
           N G G  +D++ALV  L   ++GGA LDV   EP+PA  PL
Sbjct: 230 NVGRGATVDEDALVAALESGRLGGAALDVTATEPLPASSPL 270

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 6/101 (5%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
             +D I +     K++  L  +  F  +K  AIL+N +RG +++   L+  + D  + GA
Sbjct: 197 KDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGA 256

Query: 109 GLDVMIPEPLPADHPLVQLDNCGNGLLDQEALVEFLRDKKI 149
            +D    E           D   N  +D + L+E +  ++I
Sbjct: 257 AIDTYENEA-----AYFTND-WTNKDIDDKTLLELIEHERI 291

Length = 330

>gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
            +D + +    TK    L     F   K  A+ +N +RG L+D +AL++ L +  I GA 
Sbjct: 200 GADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAA 259

Query: 110 LD 111
           LD
Sbjct: 260 LD 261

Length = 332

>gnl|CDD|185366 PRK15469, ghrA, bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 22/64 (34%), Positives = 35/64 (54%)

Query: 61  TKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPA 120
           T +T  +I ++    +   A L+N +RG  + ++ L+  L   K+ GA LDV   EPLP 
Sbjct: 201 TPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPP 260

Query: 121 DHPL 124
           + PL
Sbjct: 261 ESPL 264

Length = 312

>gnl|CDD|185335 PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional

 Score = 37.2 bits (86), Expect = 0.003
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 65  EQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEP 117
           E+LI       +KP AILIN  RG ++D  AL+  L + +     LDV   EP
Sbjct: 191 EKLIRS-----LKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEP 238

Length = 378

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	180
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	99.98
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	99.97
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	99.97
PRK06487	317	glycerate dehydrogenase; Provisional	99.96
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	99.96
KOG0068|consensus	406		99.96
PRK06932	314	glycerate dehydrogenase; Provisional	99.96
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	99.96
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	99.96
PLN02306	386	hydroxypyruvate reductase	99.95
PLN02928	347	oxidoreductase family protein	99.95
PLN03139	386	formate dehydrogenase; Provisional	99.94
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	99.94
PRK07574	385	formate dehydrogenase; Provisional	99.94
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	99.94
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	99.94
PRK13243	333	glyoxylate reductase; Reviewed	99.93
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	99.92
PRK06436	303	glycerate dehydrogenase; Provisional	99.91
KOG0069|consensus	336		99.91
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	99.91
PRK12480	330	D-lactate dehydrogenase; Provisional	99.9
PRK08605	332	D-lactate dehydrogenase; Validated	99.88
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	99.82
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	99.78
PRK06932	314	glycerate dehydrogenase; Provisional	99.77
PRK06487	317	glycerate dehydrogenase; Provisional	99.76
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	99.76
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	99.75
PLN02928	347	oxidoreductase family protein	99.74
PRK07574	385	formate dehydrogenase; Provisional	99.7
PLN03139	386	formate dehydrogenase; Provisional	99.7
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	99.69
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	99.67
PRK13243	333	glyoxylate reductase; Reviewed	99.66
PLN02306	386	hydroxypyruvate reductase	99.64
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	99.64
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	99.6
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	99.6
KOG0068|consensus	406		99.56
KOG0069|consensus	336		99.55
PRK06436	303	glycerate dehydrogenase; Provisional	99.5
PRK12480	330	D-lactate dehydrogenase; Provisional	99.5
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	99.48
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	99.45
PRK08605	332	D-lactate dehydrogenase; Validated	99.44
KOG0067|consensus	435		99.14
PTZ00075	476	Adenosylhomocysteinase; Provisional	98.64
PLN02494	477	adenosylhomocysteinase	98.64
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.19
PRK13403	335	ketol-acid reductoisomerase; Provisional	98.11
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.31
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	97.17
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	97.15
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	97.06
PRK05225	487	ketol-acid reductoisomerase; Validated	96.73
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	96.72
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	96.3
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	95.98
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	95.73
PRK08306	296	dipicolinate synthase subunit A; Reviewed	95.66
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	95.37
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	95.36
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	95.31
PLN02712	667	arogenate dehydrogenase	94.49
PRK05479	330	ketol-acid reductoisomerase; Provisional	94.45
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	94.17
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	93.83
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	92.93
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	92.87
PLN02858	1378	fructose-bisphosphate aldolase	92.79
PRK15059	292	tartronate semialdehyde reductase; Provisional	92.55
PLN02712	667	arogenate dehydrogenase	92.16
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	92.02
PLN02256	304	arogenate dehydrogenase	91.4
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	91.0
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	90.85
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	90.73
PLN02858	1378	fructose-bisphosphate aldolase	90.31
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	89.84
PTZ00075	476	Adenosylhomocysteinase; Provisional	89.7
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	88.95
PRK08655	437	prephenate dehydrogenase; Provisional	88.5
PRK08818	370	prephenate dehydrogenase; Provisional	88.49
KOG0067|consensus	435		87.99
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	87.76
KOG1370|consensus	434		87.71
PLN02494	477	adenosylhomocysteinase	87.65
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	86.23
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	84.91
PRK08306	296	dipicolinate synthase subunit A; Reviewed	84.52
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	84.49
PF05222	136	AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal	84.07
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	81.76
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	80.21

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=99.98  E-value=1.5e-32  Score=232.16  Aligned_cols=123  Identities=37%  Similarity=0.497  Sum_probs=113.4

Q ss_pred             cCCcccc-----ceeeeEEEeccccccC---CccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTG---GSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL   82 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~l   82 (180)
                      .|+||+.     ..|||++++||+....   ...+.+...+|++++++||||++|+|+|++|+||||++.|++||+|+++
T Consensus       150 ~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gail  229 (324)
T COG0111         150 LGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAIL  229 (324)
T ss_pred             CCHHHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEE
Confidence            7888885     4789999999995554   2344667889999999999999999999999999999999999999999


Q ss_pred             EecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266          83 INTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG  133 (180)
Q Consensus        83 vn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g  133 (180)
                      ||++||++||+++|.++|++|+|.+|+||||++||++.++|||.+|||++|
T Consensus       230 IN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~T  280 (324)
T COG0111         230 INAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILT  280 (324)
T ss_pred             EECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEEC
Confidence            999999999999999999999999999999999999999999999999986

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=99.97  E-value=1.8e-30  Score=218.75  Aligned_cols=121  Identities=31%  Similarity=0.476  Sum_probs=109.9

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEec
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINT   85 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~   85 (180)
                      +|+||+.     +.|||++++||+..... +..+...+|++++++||||++|+|+|++|+||||++.|++||+|+++||+
T Consensus       153 ~G~IG~~vA~~~~~fgm~V~~~d~~~~~~-~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~  231 (311)
T PRK08410        153 LGTIGKRVAKIAQAFGAKVVYYSTSGKNK-NEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINV  231 (311)
T ss_pred             CCHHHHHHHHHHhhcCCEEEEECCCcccc-ccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEEC
Confidence            8899985     57899999998864322 22346779999999999999999999999999999999999999999999


Q ss_pred             CCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCC---Cceeec
Q psy5266          86 SRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQL---DNCGNG  133 (180)
Q Consensus        86 ~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~---~Nv~~g  133 (180)
                      +||++||+++|.++|++|++. ++||||++||++.++||+.+   |||+++
T Consensus       232 aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilT  281 (311)
T PRK08410        232 GRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLIT  281 (311)
T ss_pred             CCccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEEC
Confidence            999999999999999999999 99999999999889999986   899996

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.97  E-value=2.7e-31  Score=207.27  Aligned_cols=125  Identities=34%  Similarity=0.455  Sum_probs=110.2

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCc---cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGS---KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL   82 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~l   82 (180)
                      .|+||+.     +.|||++.+|++......   +......+|+|++++||||++|+|+|++|+++||++.|++||+|+++
T Consensus        44 ~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~l  123 (178)
T PF02826_consen   44 YGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVL  123 (178)
T ss_dssp             TSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEE
T ss_pred             EcCCcCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEE
Confidence            7889985     578999999999888532   23357889999999999999999999999999999999999999999


Q ss_pred             EecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeeccc
Q psy5266          83 INTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNGLL  135 (180)
Q Consensus        83 vn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g~~  135 (180)
                      ||++||++||+++|.++|+++++.+++||||+.||++.++||+++||++.+++
T Consensus       124 vN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nvi~TPH  176 (178)
T PF02826_consen  124 VNVARGELVDEDALLDALESGKIAGAALDVFEPEPLPADSPLWDLPNVILTPH  176 (178)
T ss_dssp             EESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSSSTTHHHHTSTTEEEESS
T ss_pred             EeccchhhhhhhHHHHHHhhccCceEEEECCCCCCCCCCChHHcCCCEEEeCc
Confidence            99999999999999999999999999999999999998899999999999865

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK06487 glycerate dehydrogenase; Provisional

Probab=99.96  E-value=1.2e-29  Score=214.28  Aligned_cols=120  Identities=33%  Similarity=0.459  Sum_probs=108.0

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEec
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINT   85 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~   85 (180)
                      .|+||+.     +.|||++++|++...   +......+|++++++||||++|+|+|++|+||||++.|++||+|+++||+
T Consensus       156 ~G~IG~~vA~~l~~fgm~V~~~~~~~~---~~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~  232 (317)
T PRK06487        156 HGELGGAVARLAEAFGMRVLIGQLPGR---PARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINT  232 (317)
T ss_pred             CCHHHHHHHHHHhhCCCEEEEECCCCC---cccccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEEC
Confidence            7899985     467888888876532   12234579999999999999999999999999999999999999999999


Q ss_pred             CCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCC--CCceeec
Q psy5266          86 SRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQ--LDNCGNG  133 (180)
Q Consensus        86 ~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~--~~Nv~~g  133 (180)
                      +||++||+++|.++|+++++.+++||||++||++.++||++  +|||+.|
T Consensus       233 aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilT  282 (317)
T PRK06487        233 ARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVT  282 (317)
T ss_pred             CCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEEC
Confidence            99999999999999999999999999999999988899995  8999997

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=99.96  E-value=9.4e-30  Score=215.36  Aligned_cols=123  Identities=33%  Similarity=0.443  Sum_probs=110.1

Q ss_pred             cCCcccc-----c-eeeeEEEeccccccCCc--cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEE
Q psy5266          11 TGTPGQV-----H-LIVCVLIRYHVDLTGGS--KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL   82 (180)
Q Consensus        11 ~G~iG~~-----~-~~~~~~~~~~~~~~~~~--~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~l   82 (180)
                      .|+||+.     + .|||++++|++......  .....+.+|++++++||+|++|+|+|++|+||||++.|++||+|+++
T Consensus       153 ~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~l  232 (323)
T PRK15409        153 MGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIF  232 (323)
T ss_pred             ccHHHHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEE
Confidence            7889985     4 78888888887643211  11135679999999999999999999999999999999999999999


Q ss_pred             EecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266          83 INTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG  133 (180)
Q Consensus        83 vn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g  133 (180)
                      ||++||++||+++|.++|+++++.+++||||++||++.++||+++|||+++
T Consensus       233 IN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilT  283 (323)
T PRK15409        233 INAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAV  283 (323)
T ss_pred             EECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEc
Confidence            999999999999999999999999999999999999889999999999996

>KOG0068|consensus

Probab=99.96  E-value=5e-30  Score=213.64  Aligned_cols=159  Identities=26%  Similarity=0.370  Sum_probs=130.9

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCcccee--eccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQVY--LILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILI   83 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lv   83 (180)
                      +|+||+.     ..+||+++.||+-.++.-.+-+  .+.+++|+++.||||++|+||+|+|.+|++.+.|++||+|+.+|
T Consensus       154 ~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriI  233 (406)
T KOG0068|consen  154 LGRIGSEVAVRAKAMGMHVIGYDPITPMALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRII  233 (406)
T ss_pred             cccchHHHHHHHHhcCceEEeecCCCchHHHHhccceeeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEE
Confidence            8999985     3689999999998876443333  78999999999999999999999999999999999999999999


Q ss_pred             ecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCC--CCCCCCCCceeec----ccCHHH-----------HHHHHHc
Q psy5266          84 NTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPA--DHPLVQLDNCGNG----LLDQEA-----------LVEFLRD  146 (180)
Q Consensus        84 n~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~--~~~l~~~~Nv~~g----~~~~~a-----------l~~~L~~  146 (180)
                      |++||++||+.+|.+++++|++.++|+|||++||...  ++.|.++|||+.+    .+|.||           +.+++..
T Consensus       234 N~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~iaievaea~~~~~~~  313 (406)
T KOG0068|consen  234 NVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVSDYING  313 (406)
T ss_pred             EecCCceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999544  8899999999985    566655           5556555


Q ss_pred             cccccc-cccCCCCCCCCCCCCccc
Q psy5266         147 KKIGGA-GLDVMIPEPMPADHPLVQ  170 (180)
Q Consensus       147 g~l~ga-~ldV~~~Eplp~~~pl~~  170 (180)
                       ...++ +..-...|-++..+|+.-
T Consensus       314 -~~~g~Vna~~v~~~~l~~~~~~~~  337 (406)
T KOG0068|consen  314 -NSAGSVNAPEVALESLTELKPNIV  337 (406)
T ss_pred             -CccceechhhhhhhhhhccCchhH
Confidence             33232 333334445666666653

>PRK06932 glycerate dehydrogenase; Provisional

Probab=99.96  E-value=1.8e-29  Score=212.94  Aligned_cols=121  Identities=34%  Similarity=0.463  Sum_probs=107.2

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEec
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINT   85 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~   85 (180)
                      .|+||+.     +.|||++++|++.....  ....+.+|++++++||||++|+|+|++|+||||++.|++||+|+++||+
T Consensus       155 ~G~IG~~va~~l~~fg~~V~~~~~~~~~~--~~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~  232 (314)
T PRK06932        155 KGCLGTEVGRLAQALGMKVLYAEHKGASV--CREGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINT  232 (314)
T ss_pred             CCHHHHHHHHHHhcCCCEEEEECCCcccc--cccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEEC
Confidence            7889985     46788888777543211  1124679999999999999999999999999999999999999999999


Q ss_pred             CCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCC----CCCceeec
Q psy5266          86 SRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLV----QLDNCGNG  133 (180)
Q Consensus        86 ~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~----~~~Nv~~g  133 (180)
                      +||++||+++|.++|+++++.+++||||++||++.++||+    ++|||+.+
T Consensus       233 aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvilT  284 (314)
T PRK06932        233 GRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLIT  284 (314)
T ss_pred             CCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEEC
Confidence            9999999999999999999999999999999998899998    48999996

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=99.96  E-value=1.7e-29  Score=213.53  Aligned_cols=123  Identities=38%  Similarity=0.553  Sum_probs=110.8

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCccc--eeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQ--VYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILI   83 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lv   83 (180)
                      +|+|||.     ++|||+++.|+++.....+.  ...+.+|+|++++||+|++|||++++|+|+||++.|++||+|+++|
T Consensus       154 ~GrIG~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lV  233 (324)
T COG1052         154 LGRIGQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILV  233 (324)
T ss_pred             CCHHHHHHHHHHhcCCCEEEEECCCCChHHHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEE
Confidence            8999996     58999999999887522212  2566679999999999999999999999999999999999999999


Q ss_pred             ecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCc---eeec
Q psy5266          84 NTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDN---CGNG  133 (180)
Q Consensus        84 n~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~N---v~~g  133 (180)
                      |++||++||+++|.++|++|+|.+++||||+.||.+.+++|+.++|   |+.+
T Consensus       234 NtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvlt  286 (324)
T COG1052         234 NTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLT  286 (324)
T ss_pred             ECCCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEc
Confidence            9999999999999999999999999999999999777899998877   9886

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=99.96  E-value=1.2e-28  Score=214.53  Aligned_cols=142  Identities=30%  Similarity=0.362  Sum_probs=119.8

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEec
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINT   85 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~   85 (180)
                      +|+||+.     +.|||++++||+.............+|+|++++||+|++|+|++++|+||||++.|++||+|+++||+
T Consensus       159 ~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~  238 (409)
T PRK11790        159 YGHIGTQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINA  238 (409)
T ss_pred             CCHHHHHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEEC
Confidence            7889985     57899999999764322222345569999999999999999999999999999999999999999999


Q ss_pred             CCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCC----CCCCCCCCceeec----ccCH-----------HHHHHHHHc
Q psy5266          86 SRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPA----DHPLVQLDNCGNG----LLDQ-----------EALVEFLRD  146 (180)
Q Consensus        86 ~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~----~~~l~~~~Nv~~g----~~~~-----------~al~~~L~~  146 (180)
                      +||+++|+++|.++|+++++.+++||||++||++.    ++||+++|||+.+    ..+.           +.+.+++++
T Consensus       239 aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~~  318 (409)
T PRK11790        239 SRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEAQENIGLEVAGKLVKYSDN  318 (409)
T ss_pred             CCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999865    4699999999986    2233           336667777


Q ss_pred             cccccc
Q psy5266         147 KKIGGA  152 (180)
Q Consensus       147 g~l~ga  152 (180)
                      |.+.+.
T Consensus       319 ~~~~~~  324 (409)
T PRK11790        319 GSTLSA  324 (409)
T ss_pred             CCcCcc
Confidence            766544

>PLN02306 hydroxypyruvate reductase

Probab=99.95  E-value=3.2e-28  Score=210.16  Aligned_cols=143  Identities=26%  Similarity=0.299  Sum_probs=117.2

Q ss_pred             cCCcccc------ceeeeEEEeccccccCCcc------------------ceeeccCHHHHhccCCEEEEccCCCCCCcc
Q psy5266          11 TGTPGQV------HLIVCVLIRYHVDLTGGSK------------------QVYLILVIRTRSAQSDFIFVTCALTKDTEQ   66 (180)
Q Consensus        11 ~G~iG~~------~~~~~~~~~~~~~~~~~~~------------------~~~~~~~l~~l~~~~D~v~~h~pl~~~T~g   66 (180)
                      +|+||+.      +.|||++++||+......+                  ......+|+|++++||||++|+|+|++|+|
T Consensus       173 ~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~  252 (386)
T PLN02306        173 AGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYH  252 (386)
T ss_pred             CCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhh
Confidence            7889974      3789999999987542110                  011235899999999999999999999999


Q ss_pred             eeCHhHHhccCCCcEEEecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec----ccCH-----
Q psy5266          67 LIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG----LLDQ-----  137 (180)
Q Consensus        67 lIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g----~~~~-----  137 (180)
                      |||++.|++||+|+++||++||++||+++|.++|+++++.+++||||++||+ .+++|+++|||++|    ..+.     
T Consensus       253 lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~-~~~~L~~~pNVilTPHiag~T~e~~~~  331 (386)
T PLN02306        253 LINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPY-MKPGLADMKNAVVVPHIASASKWTREG  331 (386)
T ss_pred             hcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCC-CcchHhhCCCEEECCccccCcHHHHHH
Confidence            9999999999999999999999999999999999999999999999999996 45789999999996    2233     


Q ss_pred             ------HHHHHHHHccccccccc
Q psy5266         138 ------EALVEFLRDKKIGGAGL  154 (180)
Q Consensus       138 ------~al~~~L~~g~l~ga~l  154 (180)
                            +.+.++++++.+.+..-
T Consensus       332 ~~~~~~~ni~~~~~g~~~~~~~~  354 (386)
T PLN02306        332 MATLAALNVLGKLKGYPVWGDPN  354 (386)
T ss_pred             HHHHHHHHHHHHHcCCCCccccc
Confidence                  33555666665555543

>PLN02928 oxidoreductase family protein

Probab=99.95  E-value=3.4e-28  Score=207.64  Aligned_cols=123  Identities=28%  Similarity=0.397  Sum_probs=109.7

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCc---------------cceeeccCHHHHhccCCEEEEccCCCCCCcceeCH
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGS---------------KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGR   70 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~   70 (180)
                      .|+||+.     +.|||++.+|++......               .......+|++++++||+|++|+|+|++|++|||.
T Consensus       167 ~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~  246 (347)
T PLN02928        167 YGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVND  246 (347)
T ss_pred             CCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCH
Confidence            7888885     578899999887632111               01125679999999999999999999999999999


Q ss_pred             hHHhccCCCcEEEecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266          71 KQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG  133 (180)
Q Consensus        71 ~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g  133 (180)
                      +.|++||+|+++||++||++||+++|.++|++|++.+|+||||++||++.++||+++|||+++
T Consensus       247 ~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiT  309 (347)
T PLN02928        247 EFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIIT  309 (347)
T ss_pred             HHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEEC
Confidence            999999999999999999999999999999999999999999999999889999999999997

>PLN03139 formate dehydrogenase; Provisional

Probab=99.94  E-value=1.5e-27  Score=205.69  Aligned_cols=123  Identities=23%  Similarity=0.397  Sum_probs=110.0

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCC--c--cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGG--S--KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAI   81 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~--~--~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~   81 (180)
                      .|+||+.     +.|||++..||+.....  .  .+.....++++++++||+|++|+|++++|+++||.+.|++||+|++
T Consensus       207 ~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~  286 (386)
T PLN03139        207 AGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVL  286 (386)
T ss_pred             ecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeE
Confidence            7888885     46889999998764321  1  1123456999999999999999999999999999999999999999


Q ss_pred             EEecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266          82 LINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG  133 (180)
Q Consensus        82 lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g  133 (180)
                      +||++||+++|+++|.++|++|++.+++||||++||++.++||+.+||++++
T Consensus       287 lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilT  338 (386)
T PLN03139        287 IVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMT  338 (386)
T ss_pred             EEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEc
Confidence            9999999999999999999999999999999999999999999999999997

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=99.94  E-value=1.6e-27  Score=200.95  Aligned_cols=123  Identities=22%  Similarity=0.217  Sum_probs=109.9

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCC--ccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGG--SKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILI   83 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lv   83 (180)
                      +|+||+.     +.|||++.+|++.....  ........+|++++++||+|++|+|++++|+++||.+.|++||+|+++|
T Consensus       144 ~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lI  223 (312)
T PRK15469        144 AGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLL  223 (312)
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEE
Confidence            7888885     46888888888765432  1222345789999999999999999999999999999999999999999


Q ss_pred             ecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266          84 NTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG  133 (180)
Q Consensus        84 n~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g  133 (180)
                      |++||++||+++|.++|+++++.+++||||++||++.++||+++|||+.+
T Consensus       224 N~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~T  273 (312)
T PRK15469        224 NLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAIT  273 (312)
T ss_pred             ECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEEC
Confidence            99999999999999999999999999999999999999999999999986

>PRK07574 formate dehydrogenase; Provisional

Probab=99.94  E-value=8e-28  Score=207.44  Aligned_cols=123  Identities=26%  Similarity=0.380  Sum_probs=110.1

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCc----cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGS----KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAI   81 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~   81 (180)
                      .|+||+.     +.|||++.+||+......    .+.....+++|++++||+|++|+|++++|++|||++.|++||+|++
T Consensus       200 ~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~  279 (385)
T PRK07574        200 AGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSY  279 (385)
T ss_pred             CCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcE
Confidence            7889985     468888888887653211    1223467999999999999999999999999999999999999999


Q ss_pred             EEecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266          82 LINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG  133 (180)
Q Consensus        82 lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g  133 (180)
                      +||++||.++|+++|.++|+++++.+|+||||++||++.++||+.+|||+++
T Consensus       280 lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilT  331 (385)
T PRK07574        280 LVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMT  331 (385)
T ss_pred             EEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEEC
Confidence            9999999999999999999999999999999999999999999999999997

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=99.94  E-value=2.5e-27  Score=211.91  Aligned_cols=160  Identities=29%  Similarity=0.437  Sum_probs=129.0

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCC---ccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGG---SKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL   82 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~l   82 (180)
                      .|+||+.     +.|||++.+||+.....   ........+|+|++++||+|++|+|++++|+++||.+.|++||+|+++
T Consensus       146 ~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~l  225 (525)
T TIGR01327       146 LGRIGSIVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVII  225 (525)
T ss_pred             CCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEE
Confidence            7888885     46888888888753321   111223458999999999999999999999999999999999999999


Q ss_pred             EecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec----ccCH-----------HHHHHHHHcc
Q psy5266          83 INTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG----LLDQ-----------EALVEFLRDK  147 (180)
Q Consensus        83 vn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g----~~~~-----------~al~~~L~~g  147 (180)
                      ||++||+++|+++|.++|+++++.+|+||||++|| +.++||+++|||+.+    ..+.           +.+.++++.+
T Consensus       226 IN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP-~~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~~g~  304 (525)
T TIGR01327       226 VNCARGGIIDEAALYEALEEGHVRAAALDVFEKEP-PTDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGL  304 (525)
T ss_pred             EEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCC-CCCChhhcCCCeEECCCccccHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999 568999999999986    2222           4466677776


Q ss_pred             ccccc-cccCCCCCCCCCCCCcccC
Q psy5266         148 KIGGA-GLDVMIPEPMPADHPLVQL  171 (180)
Q Consensus       148 ~l~ga-~ldV~~~Eplp~~~pl~~~  171 (180)
                      .+.+. ......++.++...||++|
T Consensus       305 ~~~~~vn~~~~~~~~~~~~~~~~~l  329 (525)
T TIGR01327       305 PVPNAVNAPGIDADVMEKLKPYLDL  329 (525)
T ss_pred             CCCceeeCCCCCchhhhhhhhHHHH
Confidence            66554 4555555656667777765

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=99.94  E-value=4e-27  Score=210.65  Aligned_cols=161  Identities=30%  Similarity=0.437  Sum_probs=130.1

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCC--ccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGG--SKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILI   83 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lv   83 (180)
                      .|+||+.     +.|||++.+||+.....  .+......+++|++++||+|++|+|++++|+++||.+.|++||+|+++|
T Consensus       148 ~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lI  227 (526)
T PRK13581        148 LGRIGSEVAKRAKAFGMKVIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRII  227 (526)
T ss_pred             CCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEE
Confidence            7888885     46888888888754321  1111234499999999999999999999999999999999999999999


Q ss_pred             ecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec----ccCH-----------HHHHHHHHccc
Q psy5266          84 NTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG----LLDQ-----------EALVEFLRDKK  148 (180)
Q Consensus        84 n~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g----~~~~-----------~al~~~L~~g~  148 (180)
                      |++||+++|+++|.++|+++++.+|+||||++||.+ ++||+++|||+++    ..+.           +.+.++++.+.
T Consensus       228 N~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~  306 (526)
T PRK13581        228 NCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPT-DSPLFELPNVVVTPHLGASTAEAQENVAIQVAEQVIDALRGGP  306 (526)
T ss_pred             ECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCC-CchhhcCCCeeEcCccccchHHHHHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999965 8999999999996    2232           33666777766


Q ss_pred             cccc-cccCCCCCCCCCCCCcccCC
Q psy5266         149 IGGA-GLDVMIPEPMPADHPLVQLD  172 (180)
Q Consensus       149 l~ga-~ldV~~~Eplp~~~pl~~~~  172 (180)
                      +.+. .+....++-++..+||+++.
T Consensus       307 ~~~~vn~~~~~~~~~~~~~~~~~la  331 (526)
T PRK13581        307 VPNAVNLPSITAEEAEKLKPYLDLA  331 (526)
T ss_pred             cCceeeCCCCchhhhHHhHHHHHHH
Confidence            6555 45555566667777877653

>PRK13243 glyoxylate reductase; Reviewed

Probab=99.93  E-value=1.7e-26  Score=196.24  Aligned_cols=122  Identities=34%  Similarity=0.446  Sum_probs=108.3

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCccc--eeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQ--VYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILI   83 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lv   83 (180)
                      .|+||+.     +.|||++.+||+........  .....++++++++||+|++|+|++++|+++||.+.|++||+|+++|
T Consensus       158 ~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lI  237 (333)
T PRK13243        158 FGRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILV  237 (333)
T ss_pred             cCHHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE
Confidence            7888885     46888888888765432111  1245699999999999999999999999999999999999999999


Q ss_pred             ecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266          84 NTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG  133 (180)
Q Consensus        84 n~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g  133 (180)
                      |++||+++|+++|.++|++|++.+|+||||++||++ ++||+++|||+++
T Consensus       238 N~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~-~~pL~~~~nvilT  286 (333)
T PRK13243        238 NTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYY-NEELFSLKNVVLA  286 (333)
T ss_pred             ECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCC-CchhhcCCCEEEC
Confidence            999999999999999999999999999999999987 8999999999996

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=99.92  E-value=4.1e-25  Score=190.11  Aligned_cols=120  Identities=23%  Similarity=0.234  Sum_probs=104.1

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCccceeeccCHHHHhccCCEEEEccCCCCC----CcceeCHhHHhccCCCcE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKD----TEQLIGRKQFSLMKPTAI   81 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~----T~glIg~~~i~~mk~g~~   81 (180)
                      .|+||+.     +.|||++++||+.+.... ....+.+|++++++||||++|+|||++    |+||||.+.|++||+|++
T Consensus       124 ~G~IG~~vA~~l~a~G~~V~~~dp~~~~~~-~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gai  202 (378)
T PRK15438        124 VGNVGRRLQARLEALGIKTLLCDPPRADRG-DEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAI  202 (378)
T ss_pred             cCHHHHHHHHHHHHCCCEEEEECCcccccc-cccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcE
Confidence            7888885     478999999997654321 113567999999999999999999986    999999999999999999


Q ss_pred             EEecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266          82 LINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG  133 (180)
Q Consensus        82 lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g  133 (180)
                      +||++||++||+++|.++|+++++.+++||||++||. .+.+|+..+| +.|
T Consensus       203 lIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~-~~~~Ll~~~~-i~T  252 (378)
T PRK15438        203 LINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPE-LNVELLKKVD-IGT  252 (378)
T ss_pred             EEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCC-CchhhhhcCC-EEC
Confidence            9999999999999999999999999999999999995 5677877665 443

>PRK06436 glycerate dehydrogenase; Provisional

Probab=99.91  E-value=2.3e-24  Score=181.02  Aligned_cols=118  Identities=22%  Similarity=0.321  Sum_probs=104.1

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCcccee-eccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEe
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQVY-LILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILIN   84 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn   84 (180)
                      .|+||+.     +.|||++.+|+++...  ++.. ...++++++++||+|++|+|++++|+++|+.+.|++||+|+++||
T Consensus       130 ~G~IG~~vA~~l~afG~~V~~~~r~~~~--~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN  207 (303)
T PRK06436        130 YGGIGRRVALLAKAFGMNIYAYTRSYVN--DGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIIN  207 (303)
T ss_pred             cCHHHHHHHHHHHHCCCEEEEECCCCcc--cCcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEE
Confidence            7889985     4688888888876432  1222 257999999999999999999999999999999999999999999


Q ss_pred             cCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266          85 TSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG  133 (180)
Q Consensus        85 ~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g  133 (180)
                      ++||+++|+++|.++|+++++.+++||||++||++.++   .+|||+.+
T Consensus       208 ~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~---~~~nviiT  253 (303)
T PRK06436        208 VARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITET---NPDNVILS  253 (303)
T ss_pred             CCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccC---CCCCEEEC
Confidence            99999999999999999999999999999999986554   68999987

>KOG0069|consensus

Probab=99.91  E-value=1.1e-25  Score=189.67  Aligned_cols=120  Identities=43%  Similarity=0.611  Sum_probs=103.6

Q ss_pred             cCCccccceeeeEEEeccc------cccCCccce----eeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCc
Q psy5266          11 TGTPGQVHLIVCVLIRYHV------DLTGGSKQV----YLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTA   80 (180)
Q Consensus        11 ~G~iG~~~~~~~~~~~~~~------~~~~~~~~~----~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~   80 (180)
                      .|+|||.  ++.|+.+|++      +.....+..    ..+.++++++++||+|++|||||++|+|+||++.|.+||+|+
T Consensus       170 ~G~IG~~--ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~  247 (336)
T KOG0069|consen  170 LGRIGKA--IAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGA  247 (336)
T ss_pred             CcHHHHH--HHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCe
Confidence            7999997  5555555542      222211111    246699999999999999999999999999999999999999


Q ss_pred             EEEecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266          81 ILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG  133 (180)
Q Consensus        81 ~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g  133 (180)
                      ++||++||.++|++++.++|++|++.+++||||++|| +.+++++.++||+..
T Consensus       248 vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP-~~~~~l~~~dnvv~~  299 (336)
T KOG0069|consen  248 VLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEP-PVDHPLLTLDNVVIL  299 (336)
T ss_pred             EEEeccccccccHHHHHHHHhcCCcccccccccCCCC-CCCcchhcccceeEe
Confidence            9999999999999999999999999999999999999 899999999999885

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=99.91  E-value=2.4e-24  Score=185.65  Aligned_cols=120  Identities=26%  Similarity=0.236  Sum_probs=105.5

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCccceeeccCHHHHhccCCEEEEccCCCC----CCcceeCHhHHhccCCCcE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTK----DTEQLIGRKQFSLMKPTAI   81 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~----~T~glIg~~~i~~mk~g~~   81 (180)
                      .|+||+.     ..||+++++||+.... .+....+.+|+|++++||+|++|+|+|+    +|+||||.+.|++||+|++
T Consensus       124 ~G~IG~~va~~l~a~G~~V~~~Dp~~~~-~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gai  202 (381)
T PRK00257        124 AGHVGGRLVRVLRGLGWKVLVCDPPRQE-AEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAW  202 (381)
T ss_pred             CCHHHHHHHHHHHHCCCEEEEECCcccc-cccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeE
Confidence            6788874     3689999999986543 2222456799999999999999999998    5999999999999999999


Q ss_pred             EEecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266          82 LINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG  133 (180)
Q Consensus        82 lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g  133 (180)
                      +||++||++||+++|.++|+++++.+++||||++||. .+++|+.. |++.|
T Consensus       203 lIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~-~~~~L~~~-nvi~T  252 (381)
T PRK00257        203 LINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQ-IDLELADL-CTIAT  252 (381)
T ss_pred             EEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCC-CChhhhhC-CEEEc
Confidence            9999999999999999999999999999999999994 57788886 98886

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=99.90  E-value=2.4e-24  Score=182.95  Aligned_cols=123  Identities=20%  Similarity=0.256  Sum_probs=105.3

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEec
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINT   85 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~   85 (180)
                      .|+||+.     ..||+++.+||++............++++++++||+|++|+|++++|.++++.+.+.+||+|+++||+
T Consensus       154 ~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~  233 (330)
T PRK12480        154 TGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNA  233 (330)
T ss_pred             CCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEc
Confidence            6888885     35788888888765432211223458999999999999999999999999999999999999999999


Q ss_pred             CCCCccCHHHHHHHHhcCCcceEEeecCCCCCCC---------CC----CCCCCCCceeec
Q psy5266          86 SRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLP---------AD----HPLVQLDNCGNG  133 (180)
Q Consensus        86 ~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~---------~~----~~l~~~~Nv~~g  133 (180)
                      +||.++|+++|.++|++|++.+++||||++||..         .+    ++|+++|||++|
T Consensus       234 aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilT  294 (330)
T PRK12480        234 ARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVT  294 (330)
T ss_pred             CCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEEC
Confidence            9999999999999999999999999999999952         11    369999999996

>PRK08605 D-lactate dehydrogenase; Validated

Probab=99.88  E-value=2.4e-22  Score=170.77  Aligned_cols=123  Identities=24%  Similarity=0.289  Sum_probs=104.8

Q ss_pred             cCCcccc------ceeeeEEEeccccccCCcccee-eccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEE
Q psy5266          11 TGTPGQV------HLIVCVLIRYHVDLTGGSKQVY-LILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILI   83 (180)
Q Consensus        11 ~G~iG~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lv   83 (180)
                      .|+||+.      ..||+++.+||++......... ...++++++++||+|++|+|+++.|.++++.+.+++||+|+++|
T Consensus       154 ~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailI  233 (332)
T PRK08605        154 TGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFV  233 (332)
T ss_pred             CCHHHHHHHHHHHhcCCCEEEEECCCccHhHHhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEE
Confidence            6888874      2477888888876543222222 34589999999999999999999999999999999999999999


Q ss_pred             ecCCCCccCHHHHHHHHhcCCcceEEeecCCCCC--CCCCC-----------CCCCCCceeec
Q psy5266          84 NTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEP--LPADH-----------PLVQLDNCGNG  133 (180)
Q Consensus        84 n~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep--~~~~~-----------~l~~~~Nv~~g  133 (180)
                      |++||.++|+++|.++|++|++.+++||||+.||  ++.++           +|+++|||+.|
T Consensus       234 N~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilT  296 (332)
T PRK08605        234 NCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILT  296 (332)
T ss_pred             ECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEEC
Confidence            9999999999999999999999999999999998  34443           49999999996

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=99.82  E-value=6.4e-21  Score=161.44  Aligned_cols=114  Identities=32%  Similarity=0.508  Sum_probs=97.4

Q ss_pred             CCCCCCcceeCHhHHhc-----cCC-CcEEEecCC--CC-------ccCHHHHHHHHhcCCcceEEeecCCCCCC-CCCC
Q psy5266          59 ALTKDTEQLIGRKQFSL-----MKP-TAILINTSR--GG-------LLDQEALVEFLRDKKIGGAGLDVMIPEPL-PADH  122 (180)
Q Consensus        59 pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~R--g~-------~vd~~al~~~L~~~~i~~~~lDv~~~ep~-~~~~  122 (180)
                      -|.++|.|+||.+.|++     ++. |+.++...+  ..       .....+|.+.|+++|+      ++.|.|+ ++++
T Consensus       139 el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDi------v~lh~PlT~eT~  212 (324)
T COG0111         139 ELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADI------LTLHLPLTPETR  212 (324)
T ss_pred             cccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCE------EEEcCCCCcchh
Confidence            46689999999999996     777 888887776  22       2334569999999999      6666665 6677


Q ss_pred             CCCCCC------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266         123 PLVQLD------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       123 ~l~~~~------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~  178 (180)
                      .|++..            |++|| .++++||+++|++|+|+||++|||++||+|+++|||++|||++|+
T Consensus       213 g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TP  281 (324)
T COG0111         213 GLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTP  281 (324)
T ss_pred             cccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECC
Confidence            777633            99997 999999999999999999999999999999999999999999997

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.78  E-value=3e-20  Score=144.96  Aligned_cols=116  Identities=33%  Similarity=0.490  Sum_probs=91.9

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc---------cCHHHHHHHHhcCCcceEEeecCCCCCCCCCC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL---------LDQEALVEFLRDKKIGGAGLDVMIPEPLPADH  122 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~---------vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~  122 (180)
                      ..+.++|.|+||.+.+++     +++ |+.++...|..-         +...++.++++++|++...++.+     +.+.
T Consensus        32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt-----~~T~  106 (178)
T PF02826_consen   32 RELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLT-----PETR  106 (178)
T ss_dssp             S-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSS-----TTTT
T ss_pred             cccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhccc-----cccc
Confidence            356789999999999997     777 888888877643         12346999999999955444443     4566


Q ss_pred             CCCCCC------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266         123 PLVQLD------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       123 ~l~~~~------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~  178 (180)
                      .+++.+            |++|| +++++||+++|++|++++|++|||++||+|+++|||++|||++|+
T Consensus       107 ~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nvi~TP  175 (178)
T PF02826_consen  107 GLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEPLPADSPLWDLPNVILTP  175 (178)
T ss_dssp             TSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSSSTTHHHHTSTTEEEES
T ss_pred             eeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCCCCCCChHHcCCCEEEeC
Confidence            777633            89998 999999999999999999999999999999999999999999997

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK06932 glycerate dehydrogenase; Provisional

Probab=99.77  E-value=2.8e-19  Score=151.01  Aligned_cols=114  Identities=29%  Similarity=0.480  Sum_probs=95.6

Q ss_pred             CCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc----cCHHHHHHHHhcCCcceEEeecCCCCCC-CCCCCCCCC
Q psy5266          59 ALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL----LDQEALVEFLRDKKIGGAGLDVMIPEPL-PADHPLVQL  127 (180)
Q Consensus        59 pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~----vd~~al~~~L~~~~i~~~~lDv~~~ep~-~~~~~l~~~  127 (180)
                      .+.++|.|+||.+.|++     +|. |+.++...|...    ....+|.++|+++|+      |+.+.|+ +.++.|++.
T Consensus       144 ~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~~~~~~~~l~ell~~sDi------v~l~~Plt~~T~~li~~  217 (314)
T PRK06932        144 DVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASVCREGYTPFEEVLKQADI------VTLHCPLTETTQNLINA  217 (314)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccccccccCCHHHHHHhCCE------EEEcCCCChHHhcccCH
Confidence            57799999999999997     788 998888776432    123469999999999      5555554 456677763


Q ss_pred             C------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcc----cCCcEEEcC
Q psy5266         128 D------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLV----QLDNCEIRG  178 (180)
Q Consensus       128 ~------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~----~~~nv~it~  178 (180)
                      +            |++|| ++|++||+++|++|+|+||++|||++||+|+++|||    ++|||++|+
T Consensus       218 ~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvilTP  285 (314)
T PRK06932        218 ETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITP  285 (314)
T ss_pred             HHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEECC
Confidence            3            99998 999999999999999999999999999999999999    599999997

>PRK06487 glycerate dehydrogenase; Provisional

Probab=99.76  E-value=3.3e-19  Score=150.74  Aligned_cols=114  Identities=25%  Similarity=0.361  Sum_probs=95.9

Q ss_pred             CCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCC---ccCHHHHHHHHhcCCcceEEeecCCCCCC-CCCCCCCCCC
Q psy5266          59 ALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGG---LLDQEALVEFLRDKKIGGAGLDVMIPEPL-PADHPLVQLD  128 (180)
Q Consensus        59 pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~---~vd~~al~~~L~~~~i~~~~lDv~~~ep~-~~~~~l~~~~  128 (180)
                      .+.++|.|+||.+.|++     ++. |+.++...|..   .....+|.++|+++|+      |+.+.|+ +.++.+++.+
T Consensus       145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~~~~~~~l~ell~~sDi------v~l~lPlt~~T~~li~~~  218 (317)
T PRK06487        145 ELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPARPDRLPLDELLPQVDA------LTLHCPLTEHTRHLIGAR  218 (317)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcccccccCHHHHHHhCCE------EEECCCCChHHhcCcCHH
Confidence            57899999999999986     777 88888776642   2334579999999999      5556665 5567777643


Q ss_pred             ------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCccc--CCcEEEcC
Q psy5266         129 ------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQ--LDNCEIRG  178 (180)
Q Consensus       129 ------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~--~~nv~it~  178 (180)
                                  |++|| +++++||+++|++|+|+||++|||++||+|+++|||+  +|||++|+
T Consensus       219 ~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTP  283 (317)
T PRK06487        219 ELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTP  283 (317)
T ss_pred             HHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECC
Confidence                        99998 9999999999999999999999999999999999995  89999997

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=99.76  E-value=5.2e-19  Score=149.20  Aligned_cols=114  Identities=28%  Similarity=0.464  Sum_probs=95.5

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCC-----ccCHHHHHHHHhcCCcceEEeecCCCCCC-CCCCCCC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGG-----LLDQEALVEFLRDKKIGGAGLDVMIPEPL-PADHPLV  125 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~-----~vd~~al~~~L~~~~i~~~~lDv~~~ep~-~~~~~l~  125 (180)
                      ..|.++|.|+||.+.|++     ++. |+.++...|..     .+...+|+++|+++|+      |+.+.|+ ++++.|+
T Consensus       141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDv------v~lh~Plt~~T~~li  214 (311)
T PRK08410        141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDI------ISIHAPLNEKTKNLI  214 (311)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCE------EEEeCCCCchhhccc
Confidence            357899999999999987     777 88888877642     1234479999999999      4455554 5567777


Q ss_pred             CCC------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccC---CcEEEcC
Q psy5266         126 QLD------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQL---DNCEIRG  178 (180)
Q Consensus       126 ~~~------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~---~nv~it~  178 (180)
                      +.+            |++|| ++|++||+++|++|+|+ |++|||++||+|+++|||++   |||++|+
T Consensus       215 ~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTP  282 (311)
T PRK08410        215 AYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITP  282 (311)
T ss_pred             CHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECC
Confidence            643            99998 99999999999999999 99999999999999999997   8999997

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=99.75  E-value=8.1e-19  Score=148.72  Aligned_cols=115  Identities=27%  Similarity=0.418  Sum_probs=94.2

Q ss_pred             cCCCCCCcceeCHhHHhc-----cC-C-CcEEEecCCCCc--------cCHHHHHHHHhcCCcceEEeecCCCCCC-CCC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MK-P-TAILINTSRGGL--------LDQEALVEFLRDKKIGGAGLDVMIPEPL-PAD  121 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk-~-g~~lvn~~Rg~~--------vd~~al~~~L~~~~i~~~~lDv~~~ep~-~~~  121 (180)
                      ..|.++|.|+||.+.|++     ++ . |+.++...|..-        +...++.++++++|+      |+.+.|+ +.+
T Consensus       141 ~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDv------v~lh~plt~~T  214 (323)
T PRK15409        141 TDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDF------VCIILPLTDET  214 (323)
T ss_pred             CCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCE------EEEeCCCChHH
Confidence            357899999999999996     76 6 887776555311        122368999999999      5555554 456


Q ss_pred             CCCCCCC------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266         122 HPLVQLD------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       122 ~~l~~~~------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~  178 (180)
                      +.|++.+            |++|| +++++||+++|++|+|+||++|||++||+|.++|||++|||++|+
T Consensus       215 ~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTP  284 (323)
T PRK15409        215 HHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVP  284 (323)
T ss_pred             hhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcC
Confidence            6666632            99998 999999999999999999999999999999999999999999997

>PLN02928 oxidoreductase family protein

Probab=99.74  E-value=9.9e-19  Score=149.50  Aligned_cols=116  Identities=25%  Similarity=0.363  Sum_probs=94.7

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc---------------------cCHHHHHHHHhcCCcceEEe
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL---------------------LDQEALVEFLRDKKIGGAGL  110 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~---------------------vd~~al~~~L~~~~i~~~~l  110 (180)
                      ..+.++|.|+||.+.+++     ++. |+.++...|..-                     ....+|.++++++|++...+
T Consensus       155 ~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~l  234 (347)
T PLN02928        155 DTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCC  234 (347)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECC
Confidence            357799999999999986     777 888887766310                     13347899999999954444


Q ss_pred             ecCCCCCCCCCCCCCCCC------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEc
Q psy5266         111 DVMIPEPLPADHPLVQLD------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIR  177 (180)
Q Consensus       111 Dv~~~ep~~~~~~l~~~~------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it  177 (180)
                      +.+     +.++.+++..            |++|| +++++||+++|++|+|+||++|||++||+|+++|||++|||++|
T Consensus       235 Plt-----~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiT  309 (347)
T PLN02928        235 TLT-----KETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIIT  309 (347)
T ss_pred             CCC-----hHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEEC
Confidence            443     4456666532            99998 99999999999999999999999999999999999999999999


Q ss_pred             C
Q psy5266         178 G  178 (180)
Q Consensus       178 ~  178 (180)
                      +
T Consensus       310 P  310 (347)
T PLN02928        310 P  310 (347)
T ss_pred             C
Confidence            7

>PRK07574 formate dehydrogenase; Provisional

Probab=99.70  E-value=2.5e-18  Score=148.54  Aligned_cols=115  Identities=28%  Similarity=0.432  Sum_probs=93.2

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc----------cCHHHHHHHHhcCCcceEEeecCCCCCC-CC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL----------LDQEALVEFLRDKKIGGAGLDVMIPEPL-PA  120 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~----------vd~~al~~~L~~~~i~~~~lDv~~~ep~-~~  120 (180)
                      ..+.++|.|+||.+.+++     +++ |+.++...|...          .-..++.++++++|+      |+.+.|+ +.
T Consensus       188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDv------V~l~lPlt~~  261 (385)
T PRK07574        188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDV------VTIHCPLHPE  261 (385)
T ss_pred             eecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCE------EEEcCCCCHH
Confidence            457899999999999986     777 888887776531          112468899999999      5555554 33


Q ss_pred             CCCCCCC------C------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266         121 DHPLVQL------D------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       121 ~~~l~~~------~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~  178 (180)
                      ++.+++.      +      |++|| +++++||+++|++|+|+||++|||++||+|+++|||++|||++|+
T Consensus       262 T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTP  332 (385)
T PRK07574        262 TEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTP  332 (385)
T ss_pred             HHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECC
Confidence            4445442      2      88998 999999999999999999999999999999999999999999996

>PLN03139 formate dehydrogenase; Provisional

Probab=99.70  E-value=3.7e-18  Score=147.55  Aligned_cols=115  Identities=25%  Similarity=0.373  Sum_probs=92.3

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc----------cCHHHHHHHHhcCCcceEEeecCCCCCC-CC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL----------LDQEALVEFLRDKKIGGAGLDVMIPEPL-PA  120 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~----------vd~~al~~~L~~~~i~~~~lDv~~~ep~-~~  120 (180)
                      ..|.++|.|+||.+.+++     |++ |+.++...|...          ...+++.++++++|++..      +.|+ +.
T Consensus       195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l------~lPlt~~  268 (386)
T PLN03139        195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVI------NTPLTEK  268 (386)
T ss_pred             cCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEE------eCCCCHH
Confidence            457899999999999986     666 888877766421          112368999999999444      5554 33


Q ss_pred             CCCCCCC------C------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266         121 DHPLVQL------D------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       121 ~~~l~~~------~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~  178 (180)
                      +..+++.      +      |+.|| +++++||+++|++|+|+||++|||++||+|+++|||++|||++|+
T Consensus       269 T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTP  339 (386)
T PLN03139        269 TRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTP  339 (386)
T ss_pred             HHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEcc
Confidence            4445442      2      88897 999999999999999999999999999999999999999999997

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=99.69  E-value=6.7e-18  Score=142.51  Aligned_cols=115  Identities=25%  Similarity=0.304  Sum_probs=91.0

Q ss_pred             CCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCC--------ccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCC
Q psy5266          59 ALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGG--------LLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPL  124 (180)
Q Consensus        59 pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~--------~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l  124 (180)
                      .+.++|.|+||.+.+++     +++ |+.++...|..        .....++.++++++|++...++.+     +.++.+
T Consensus       133 ~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt-----~~T~~l  207 (312)
T PRK15469        133 HREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNT-----PETVGI  207 (312)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCC-----HHHHHH
Confidence            46789999999999985     776 77776555421        112457999999999955544443     233444


Q ss_pred             CC------CC------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266         125 VQ------LD------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       125 ~~------~~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~  178 (180)
                      ++      ++      |++|| +++++||+++|++|+|+||++|||++||+|.++|||++|||++|+
T Consensus       208 i~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TP  274 (312)
T PRK15469        208 INQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITP  274 (312)
T ss_pred             hHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECC
Confidence            43      22      89998 999999999999999999999999999999999999999999997

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=99.67  E-value=2e-17  Score=144.17  Aligned_cols=115  Identities=22%  Similarity=0.350  Sum_probs=94.1

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCC------ccCHHHHHHHHhcCCcceEEeecCCCCCC-CCCCCC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGG------LLDQEALVEFLRDKKIGGAGLDVMIPEPL-PADHPL  124 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~------~vd~~al~~~L~~~~i~~~~lDv~~~ep~-~~~~~l  124 (180)
                      ..|.++|.|+||.+.+++     ++. |+.++...|..      .....++.++++++|+      |+.+.|+ +.++.+
T Consensus       147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDi------Vslh~Plt~~T~~l  220 (409)
T PRK11790        147 FEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDV------VSLHVPETPSTKNM  220 (409)
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCE------EEEcCCCChHHhhc
Confidence            457899999999999997     667 88888776532      1122379999999999      5556665 446666


Q ss_pred             CCCC------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCC----CCCcccCCcEEEcC
Q psy5266         125 VQLD------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPA----DHPLVQLDNCEIRG  178 (180)
Q Consensus       125 ~~~~------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~----~~pl~~~~nv~it~  178 (180)
                      ++.+            |++|| ++|++||.++|++|+|+||++|||++||+|.    ++|||++|||++|+
T Consensus       221 i~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTP  291 (409)
T PRK11790        221 IGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTP  291 (409)
T ss_pred             cCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECC
Confidence            6532            88897 9999999999999999999999999999887    47999999999997

>PRK13243 glyoxylate reductase; Reviewed

Probab=99.66  E-value=4.6e-17  Score=138.55  Aligned_cols=115  Identities=25%  Similarity=0.330  Sum_probs=90.8

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc--------cCHHHHHHHHhcCCcceEEeecCCCCCCCCCCC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL--------LDQEALVEFLRDKKIGGAGLDVMIPEPLPADHP  123 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~--------vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~  123 (180)
                      ..|.++|.|+||.+.+++     ++. |+.++...|..-        +...++.++++++|++...++.+     +.+..
T Consensus       146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t-----~~T~~  220 (333)
T PRK13243        146 YDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLT-----KETYH  220 (333)
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCC-----hHHhh
Confidence            357899999999999996     566 777776665421        11235888999999955555444     33444


Q ss_pred             CCCC------C------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266         124 LVQL------D------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       124 l~~~------~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~  178 (180)
                      +++.      +      |+.|| +++++||.++|++|+|+||++|||++||+| ++|||++|||++|+
T Consensus       221 ~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~-~~pL~~~~nvilTP  287 (333)
T PRK13243        221 MINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYY-NEELFSLKNVVLAP  287 (333)
T ss_pred             ccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCC-CchhhcCCCEEECC
Confidence            5542      2      88887 999999999999999999999999999987 89999999999997

>PLN02306 hydroxypyruvate reductase

Probab=99.64  E-value=1.2e-16  Score=138.21  Aligned_cols=115  Identities=24%  Similarity=0.268  Sum_probs=91.1

Q ss_pred             cCCCCCCcceeCHhHHhc-----cC-C-CcEEEecCCCC---c---------------------cCHHHHHHHHhcCCcc
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MK-P-TAILINTSRGG---L---------------------LDQEALVEFLRDKKIG  106 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk-~-g~~lvn~~Rg~---~---------------------vd~~al~~~L~~~~i~  106 (180)
                      ..+.++|.|+||.+.|++     ++ . |+.++...|..   .                     ....+|.++|+++|++
T Consensus       161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV  240 (386)
T PLN02306        161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVI  240 (386)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEE
Confidence            357899999999999996     43 6 88888665431   0                     0023789999999994


Q ss_pred             eEEeecCCCCCCCCCCCCCCCC------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCc
Q psy5266         107 GAGLDVMIPEPLPADHPLVQLD------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDN  173 (180)
Q Consensus       107 ~~~lDv~~~ep~~~~~~l~~~~------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~n  173 (180)
                      ...++.+     +.++.|++.+            |++|| +++++||+++|++|+++||++|||++||++ ++|||++||
T Consensus       241 ~lh~Plt-----~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~-~~~L~~~pN  314 (386)
T PLN02306        241 SLHPVLD-----KTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYM-KPGLADMKN  314 (386)
T ss_pred             EEeCCCC-----hhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCC-cchHhhCCC
Confidence            4444443     4566666633            99998 999999999999999999999999999975 589999999


Q ss_pred             EEEcC
Q psy5266         174 CEIRG  178 (180)
Q Consensus       174 v~it~  178 (180)
                      |++|+
T Consensus       315 VilTP  319 (386)
T PLN02306        315 AVVVP  319 (386)
T ss_pred             EEECC
Confidence            99997

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=99.64  E-value=1.1e-16  Score=135.68  Aligned_cols=131  Identities=30%  Similarity=0.441  Sum_probs=104.7

Q ss_pred             cCHHHHhccCCEEEE-------ccCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc--------cCHHHHHHHH
Q psy5266          42 LVIRTRSAQSDFIFV-------TCALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL--------LDQEALVEFL  100 (180)
Q Consensus        42 ~~l~~l~~~~D~v~~-------h~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~--------vd~~al~~~L  100 (180)
                      ..-++..++.++-..       ...+.++|.|+||.+.|++     +|. |+.++...|...        ...-++.+++
T Consensus       119 ~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~l~ell  198 (324)
T COG1052         119 HEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDELL  198 (324)
T ss_pred             HHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCChHHHhhcCceeccHHHHH
Confidence            344455555554433       2345689999999999997     788 888888877642        1222399999


Q ss_pred             hcCCcceEEeecCCCCCC-CCCCCCCCCC------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCC
Q psy5266         101 RDKKIGGAGLDVMIPEPL-PADHPLVQLD------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADH  166 (180)
Q Consensus       101 ~~~~i~~~~lDv~~~ep~-~~~~~l~~~~------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~  166 (180)
                      +++|+      ++.+.|+ ++++.|++.+            |++|| ++|++|++++|++|+|++|++|||+.||.+.++
T Consensus       199 ~~sDi------i~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~  272 (324)
T COG1052         199 AESDI------ISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDH  272 (324)
T ss_pred             HhCCE------EEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCCh
Confidence            99999      6667776 6677888743            99998 999999999999999999999999999988899


Q ss_pred             CcccCCc---EEEcC
Q psy5266         167 PLVQLDN---CEIRG  178 (180)
Q Consensus       167 pl~~~~n---v~it~  178 (180)
                      ||++++|   |++|+
T Consensus       273 ~l~~l~~~~~vvltP  287 (324)
T COG1052         273 PLLRLDNFPNVVLTP  287 (324)
T ss_pred             hHhhccCCCCEEEcc
Confidence            9999999   99997

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=99.60  E-value=3.1e-16  Score=140.68  Aligned_cols=115  Identities=28%  Similarity=0.370  Sum_probs=91.1

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc--------cCHHHHHHHHhcCCcceEEeecCCCCCCCCCCC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL--------LDQEALVEFLRDKKIGGAGLDVMIPEPLPADHP  123 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~--------vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~  123 (180)
                      ..|.++|.|+||.+.+++     +++ |+.++...|..-        +...++.++++++|+....++.+     +.+..
T Consensus       136 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t-----~~t~~  210 (526)
T PRK13581        136 VELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLT-----PETRG  210 (526)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEccCCC-----hHhhc
Confidence            457899999999999986     777 888887766310        11126889999999944444443     34555


Q ss_pred             CCCC------C------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266         124 LVQL------D------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       124 l~~~------~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~  178 (180)
                      +++.      +      |+.|| +++++||+++|++|+|+||++|||++||++ ++|||++|||++|+
T Consensus       211 li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~-~~pL~~~~nvilTP  277 (526)
T PRK13581        211 LIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPT-DSPLFELPNVVVTP  277 (526)
T ss_pred             CcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCC-CchhhcCCCeeEcC
Confidence            6642      1      88887 999999999999999999999999999976 89999999999997

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=99.60  E-value=5.6e-16  Score=139.01  Aligned_cols=115  Identities=27%  Similarity=0.376  Sum_probs=90.6

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc--------cC-HHHHHHHHhcCCcceEEeecCCCCCCCCCC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL--------LD-QEALVEFLRDKKIGGAGLDVMIPEPLPADH  122 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~--------vd-~~al~~~L~~~~i~~~~lDv~~~ep~~~~~  122 (180)
                      ..|.++|.|+||.+.+++     +++ |+.++...|..-        +. .+++.++++++|+....++.+     +.+.
T Consensus       134 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt-----~~T~  208 (525)
T TIGR01327       134 TELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLT-----PETR  208 (525)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCC-----hhhc
Confidence            468899999999999886     676 888877765310        11 135899999999954444433     3455


Q ss_pred             CCCCC------C------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266         123 PLVQL------D------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       123 ~l~~~------~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~  178 (180)
                      .+++.      +      |++|| +++++||+++|++|+|+||++|||++|| |+++|||++|||++|+
T Consensus       209 ~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP-~~~~pL~~~~nvi~TP  276 (525)
T TIGR01327       209 GLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEP-PTDNPLFDLDNVIATP  276 (525)
T ss_pred             cCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCC-CCCChhhcCCCeEECC
Confidence            56542      1      88887 9999999999999999999999999999 5589999999999997

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>KOG0068|consensus

Probab=99.56  E-value=1e-15  Score=128.30  Aligned_cols=118  Identities=25%  Similarity=0.357  Sum_probs=98.3

Q ss_pred             EEccCCCCCCcceeCHhHHhc-----cCC-CcEEEecC------CCC--ccCHHHHHHHHhcCCcceEEeecCCCCCC-C
Q psy5266          55 FVTCALTKDTEQLIGRKQFSL-----MKP-TAILINTS------RGG--LLDQEALVEFLRDKKIGGAGLDVMIPEPL-P  119 (180)
Q Consensus        55 ~~h~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~------Rg~--~vd~~al~~~L~~~~i~~~~lDv~~~ep~-~  119 (180)
                      .....+.++|.|+||.+++++     ||. |..+|..-      +++  =|..-.+++++..+|+      ++.|.|+ |
T Consensus       139 ~~G~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADF------itlH~PLtP  212 (406)
T KOG0068|consen  139 YLGWELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEAFGVQLVSLEEILPKADF------ITLHVPLTP  212 (406)
T ss_pred             eeeeEEeccEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHHhccceeeeHHHHHhhcCE------EEEccCCCc
Confidence            455678899999999999986     776 66666441      222  2455678999999999      8889997 7


Q ss_pred             CCCCCCCCC------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCC--CCCcccCCcEEEcC
Q psy5266         120 ADHPLVQLD------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPA--DHPLVQLDNCEIRG  178 (180)
Q Consensus       120 ~~~~l~~~~------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~--~~pl~~~~nv~it~  178 (180)
                      .++.+++.+            |+.|| ++|+.||+++|++|+++||++|||..||...  ++.|.++|||++|+
T Consensus       213 ~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~Tp  286 (406)
T KOG0068|consen  213 STEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTP  286 (406)
T ss_pred             chhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecC
Confidence            788888755            99996 9999999999999999999999999999554  89999999999997

>KOG0069|consensus

Probab=99.55  E-value=2.3e-15  Score=127.28  Aligned_cols=112  Identities=35%  Similarity=0.569  Sum_probs=93.1

Q ss_pred             CCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc-cCHH--------HHHHHHhcCCcceEEeecCCCCCCCCCCCCC
Q psy5266          61 TKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL-LDQE--------ALVEFLRDKKIGGAGLDVMIPEPLPADHPLV  125 (180)
Q Consensus        61 ~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~-vd~~--------al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~  125 (180)
                      ..+|.|++|.+.|++     |++ |+.+...+|-.. -++.        ++++.+.++|+...+++.+     +.++.++
T Consensus       161 ~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt-----~~T~~li  235 (336)
T KOG0069|consen  161 EGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLT-----KETRHLI  235 (336)
T ss_pred             cCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCCC-----HHHHHHh
Confidence            478999999999986     888 877888888543 2222        7999999999966655555     4455566


Q ss_pred             CCC------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266         126 QLD------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       126 ~~~------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~  178 (180)
                      +.+            |++|| +++++++.++|++|+++++++|||++|| +.++||++++||++|+
T Consensus       236 Nk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP-~~~~~l~~~dnvv~~P  300 (336)
T KOG0069|consen  236 NKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEP-PVDHPLLTLDNVVILP  300 (336)
T ss_pred             hHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCC-CCCcchhcccceeEec
Confidence            533            99998 9999999999999999999999999999 9999999999999986

>PRK06436 glycerate dehydrogenase; Provisional

Probab=99.50  E-value=1.4e-14  Score=121.95  Aligned_cols=113  Identities=14%  Similarity=0.176  Sum_probs=88.9

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc---cC--HHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL---LD--QEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQ  126 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~---vd--~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~  126 (180)
                      ..|.++|.|+||.+.+++     +|. |+.++...|...   +.  ..++.++++++|+....++.+     ++++.+++
T Consensus       118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~~~~l~ell~~aDiv~~~lp~t-----~~T~~li~  192 (303)
T PRK06436        118 KLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVNDGISSIYMEPEDIMKKSDFVLISLPLT-----DETRGMIN  192 (303)
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcccCcccccCCHHHHHhhCCEEEECCCCC-----chhhcCcC
Confidence            357899999999999986     777 888877776321   11  246899999999944444433     34555555


Q ss_pred             C------C------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266         127 L------D------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       127 ~------~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~  178 (180)
                      .      +      |+.|| +++++||.++|++|+++++++|||++||+|+++   .+|||++|+
T Consensus       193 ~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~---~~~nviiTP  254 (303)
T PRK06436        193 SKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITET---NPDNVILSP  254 (303)
T ss_pred             HHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccC---CCCCEEECC
Confidence            2      2      88887 999999999999999999999999999998876   689999997

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=99.50  E-value=3.1e-15  Score=127.20  Aligned_cols=121  Identities=15%  Similarity=0.158  Sum_probs=86.9

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc-----cC-HHHHHHHHhcCCcceEEeecCCCCCCCCCCCCC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL-----LD-QEALVEFLRDKKIGGAGLDVMIPEPLPADHPLV  125 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~-----vd-~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~  125 (180)
                      ..+.++|.|+||.+.+++     ++. |..++...|..-     +. ..++.++++++|++..+++....+-...+..++
T Consensus       142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l  221 (330)
T PRK12480        142 KPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMF  221 (330)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHH
Confidence            357788999999999996     555 777776655321     11 125888999999966665554321100011111


Q ss_pred             -CC------Cceeec-ccCHHHHHHHHHccccccccccCCCCCCCC-------------CCCCcccCCcEEEcC
Q psy5266         126 -QL------DNCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMP-------------ADHPLVQLDNCEIRG  178 (180)
Q Consensus       126 -~~------~Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp-------------~~~pl~~~~nv~it~  178 (180)
                       .+      -|++|| .++++||+++|++|+|+||++|||++||++             ..+|||++|||++|+
T Consensus       222 ~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTP  295 (330)
T PRK12480        222 DHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTP  295 (330)
T ss_pred             hcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECC
Confidence             11      288887 999999999999999999999999999962             224799999999997

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=99.48  E-value=3.8e-14  Score=122.32  Aligned_cols=118  Identities=18%  Similarity=0.134  Sum_probs=89.4

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCC-----ccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGG-----LLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQ  126 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~-----~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~  126 (180)
                      ..+.++|.|+||.+.+++     ++. |+.++...+..     .....+|.++++++|++...++.+...+ .++..|++
T Consensus       112 ~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~-~~T~~li~  190 (378)
T PRK15438        112 FSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGP-YKTLHLAD  190 (378)
T ss_pred             CCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcc-cccccccC
Confidence            356789999999999986     666 77776654421     1223469999999999665555554322 23566665


Q ss_pred             CC------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266         127 LD------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       127 ~~------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~  178 (180)
                      .+            |+.|| ++|++||+++|++|++.+|++|||++||+ +++|||..++ ++|+
T Consensus       191 ~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~-~~~~Ll~~~~-i~TP  253 (378)
T PRK15438        191 EKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPE-LNVELLKKVD-IGTP  253 (378)
T ss_pred             HHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCC-CchhhhhcCC-EECC
Confidence            32            88998 99999999999999999999999999995 5688988765 8886

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=99.45  E-value=7.4e-14  Score=120.72  Aligned_cols=118  Identities=20%  Similarity=0.147  Sum_probs=89.7

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCC-----CccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRG-----GLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQ  126 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg-----~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~  126 (180)
                      ..+.++|.|+||.+.+++     ++. |..++...+.     ......++.++++++|++...++.+...+ ..+..|++
T Consensus       112 ~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~-~~T~~li~  190 (381)
T PRK00257        112 VDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGE-HPTRHLLD  190 (381)
T ss_pred             CCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCcc-ccccccCC
Confidence            456789999999999986     555 7666655432     12334468999999999555555543211 13566665


Q ss_pred             CC------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266         127 LD------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       127 ~~------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~  178 (180)
                      .+            |+.|| +++++||.++|++|++.+|++|||++||+ +++|||+. ||++|+
T Consensus       191 ~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~-~~~~L~~~-nvi~TP  253 (381)
T PRK00257        191 EAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQ-IDLELADL-CTIATP  253 (381)
T ss_pred             HHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCC-CChhhhhC-CEEEcC
Confidence            32            88887 99999999999999999999999999995 57899996 999997

>PRK08605 D-lactate dehydrogenase; Validated

Probab=99.44  E-value=8.6e-14  Score=118.46  Aligned_cols=115  Identities=23%  Similarity=0.331  Sum_probs=88.0

Q ss_pred             CCCCCCcceeCHhHHhc-----c-CC-CcEEEecCCCCc------cCH-HHHHHHHhcCCcceEEeecCCCCCCCCCCCC
Q psy5266          59 ALTKDTEQLIGRKQFSL-----M-KP-TAILINTSRGGL------LDQ-EALVEFLRDKKIGGAGLDVMIPEPLPADHPL  124 (180)
Q Consensus        59 pl~~~T~glIg~~~i~~-----m-k~-g~~lvn~~Rg~~------vd~-~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l  124 (180)
                      .|.++|.|+||.+.+++     + +. |+.++...|..-      +.. .++.++++++|+...+++....+     ..+
T Consensus       143 ~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~~t-----~~l  217 (332)
T PRK08605        143 SIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATKYN-----HYL  217 (332)
T ss_pred             eeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHHhhccccCCHHHHHHhCCEEEEeCCCCcch-----hhh
Confidence            57789999999999886     5 65 777776665321      111 36889999999976666555333     333


Q ss_pred             CC------CC------ceeec-ccCHHHHHHHHHccccccccccCCCCCC--CCCCC-----------CcccCCcEEEcC
Q psy5266         125 VQ------LD------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEP--MPADH-----------PLVQLDNCEIRG  178 (180)
Q Consensus       125 ~~------~~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Ep--lp~~~-----------pl~~~~nv~it~  178 (180)
                      ++      ++      |+.|| .++++++.++|++|+|+||++|||++||  +|.++           |||++|||++|+
T Consensus       218 i~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTP  297 (332)
T PRK08605        218 FNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTP  297 (332)
T ss_pred             cCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEECC
Confidence            32      11      77887 9999999999999999999999999998  46665           499999999997

>KOG0067|consensus

Probab=99.14  E-value=5.3e-11  Score=101.15  Aligned_cols=117  Identities=29%  Similarity=0.395  Sum_probs=92.0

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCccce---eeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQV---YLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL   82 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~l   82 (180)
                      -|++||.     ..||..++.||+......+..   ....+|++++.++|.+|+|+-+++.++++|+.-.+.+|++|+.+
T Consensus       186 ~gr~g~av~~~A~afg~~~ifydp~~~~g~~~~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGafl  265 (435)
T KOG0067|consen  186 FGRTGQAVALRAKAFGFVVIFYDPYLIDGIDKSLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFL  265 (435)
T ss_pred             cccccceehhhhhcccceeeeecchhhhhhhhhcccceecccchhhhhccceeeecccCcccccccccccceeecccceE
Confidence            5666765     125566666676666433332   45668999999999999999999999999999999999999999


Q ss_pred             EecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266          83 INTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG  133 (180)
Q Consensus        83 vn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g  133 (180)
                      +|++||.++|+++|.++|++|++.+++=.-      ....++.+.||.+..
T Consensus       266 vnta~gglvdekaLaqaLk~G~i~~aa~~~------~~~~~l~d~pn~ic~  310 (435)
T KOG0067|consen  266 VNTARGGLVDEKALAQALKSGRIRGAAPRS------FKQGPLKDAPNLICT  310 (435)
T ss_pred             eeecccccCChHHHHhhhccCceecccCcc------cccccccCCCCCCCC
Confidence            999999999999999999999998777111      223456666666664

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=98.64  E-value=5.7e-08  Score=86.04  Aligned_cols=97  Identities=18%  Similarity=0.218  Sum_probs=73.3

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCc---cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGS---KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL   82 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~l   82 (180)
                      .|+||+.     +.||+++..++.+.....   ..-+...+++++++.||+|+.|.    .|.++|+.+.|++||+|+++
T Consensus       262 ~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~at----Gt~~iI~~e~~~~MKpGAiL  337 (476)
T PTZ00075        262 YGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTAT----GNKDIITLEHMRRMKNNAIV  337 (476)
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECC----CcccccCHHHHhccCCCcEE
Confidence            5777775     467888888865543210   11234568999999999999984    58899999999999999999


Q ss_pred             EecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCC
Q psy5266          83 INTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPL  118 (180)
Q Consensus        83 vn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~  118 (180)
                      +|++|+   |.+.+.+.|+++.    ++|+++.+|.
T Consensus       338 INvGr~---d~Ei~i~aL~~~~----~vdv~evep~  366 (476)
T PTZ00075        338 GNIGHF---DNEIQVAELEAYP----GIEIVEIKPQ  366 (476)
T ss_pred             EEcCCC---chHHhHHHHHhcC----CceeecccCC
Confidence            999999   5666666666543    5678888885

>PLN02494 adenosylhomocysteinase

Probab=98.64  E-value=2.5e-08  Score=88.20  Aligned_cols=101  Identities=18%  Similarity=0.216  Sum_probs=80.8

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCc---cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGS---KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL   82 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~l   82 (180)
                      .|.||+.     +.||++++.++.+.....   ...+...+++++++.+|+|+.    +..|.++|+...|.+||+|+++
T Consensus       262 yG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI~----tTGt~~vI~~e~L~~MK~GAiL  337 (477)
T PLN02494        262 YGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVT----TTGNKDIIMVDHMRKMKNNAIV  337 (477)
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEEE----CCCCccchHHHHHhcCCCCCEE
Confidence            6778875     467888888876654211   111344589999999999997    5578899999999999999999


Q ss_pred             EecCC-CCccCHHHHHHH--HhcCCcceEEeecCCCC
Q psy5266          83 INTSR-GGLLDQEALVEF--LRDKKIGGAGLDVMIPE  116 (180)
Q Consensus        83 vn~~R-g~~vd~~al~~~--L~~~~i~~~~lDv~~~e  116 (180)
                      +|++| +..||+.+|.++  ++...+. ..+|++..+
T Consensus       338 iNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~  373 (477)
T PLN02494        338 CNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFP  373 (477)
T ss_pred             EEcCCCCCccCHHHHhhccccceeccC-CCceEEEcC
Confidence            99999 579999999998  8888886 889988654

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.19  E-value=1.6e-06  Score=75.76  Aligned_cols=99  Identities=20%  Similarity=0.238  Sum_probs=78.0

Q ss_pred             cCCcccc-----ceeeeEEEeccccccC----CccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTG----GSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAI   81 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~   81 (180)
                      .|.||+.     +.+|+++..++.+...    ..++ +...++++.++.+|+++...    .+.++|+...+..||+|++
T Consensus       203 ~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G-~~v~~leeal~~aDVVItaT----G~~~vI~~~~~~~mK~Gai  277 (406)
T TIGR00936       203 YGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDG-FRVMTMEEAAKIGDIFITAT----GNKDVIRGEHFENMKDGAI  277 (406)
T ss_pred             CCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcC-CEeCCHHHHHhcCCEEEECC----CCHHHHHHHHHhcCCCCcE
Confidence            5677765     3578888888655432    1111 34567899999999997643    4789999999999999999


Q ss_pred             EEecCCCCc-cCHHHHHHHHhcCCcceEEeecCC
Q psy5266          82 LINTSRGGL-LDQEALVEFLRDKKIGGAGLDVMI  114 (180)
Q Consensus        82 lvn~~Rg~~-vd~~al~~~L~~~~i~~~~lDv~~  114 (180)
                      ++|++|+.+ ||.++|.+++.+.......+|.|.
T Consensus       278 liN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~  311 (406)
T TIGR00936       278 VANIGHFDVEIDVKALEELAVEKRNVRPQVDEYI  311 (406)
T ss_pred             EEEECCCCceeCHHHHHHHHhhccccccceEEEE
Confidence            999999998 999999998888777788888764

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=98.11  E-value=1.5e-06  Score=73.75  Aligned_cols=76  Identities=8%  Similarity=0.045  Sum_probs=56.4

Q ss_pred             cCCccccc-----eeeeEEEeccccccCCc--cc-eeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEE
Q psy5266          11 TGTPGQVH-----LIVCVLIRYHVDLTGGS--KQ-VYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL   82 (180)
Q Consensus        11 ~G~iG~~~-----~~~~~~~~~~~~~~~~~--~~-~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~l   82 (180)
                      .|+||+.|     .+|+++..|+.......  .. -....++++++++||+|++|+|. ++|.++++.+.+..||+|+++
T Consensus        24 ~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd-~~t~~V~~~eil~~MK~GaiL  102 (335)
T PRK13403         24 YGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPD-EQQAHVYKAEVEENLREGQML  102 (335)
T ss_pred             EcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCC-hHHHHHHHHHHHhcCCCCCEE
Confidence            68888863     57888878764322111  11 12456999999999999999997 678999999999999999877


Q ss_pred             EecCCC
Q psy5266          83 INTSRG   88 (180)
Q Consensus        83 vn~~Rg   88 (180)
                      +. ++|
T Consensus       103 ~f-~hg  107 (335)
T PRK13403        103 LF-SHG  107 (335)
T ss_pred             EE-CCC
Confidence            53 344

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.31  E-value=0.00016  Score=60.62  Aligned_cols=78  Identities=13%  Similarity=0.113  Sum_probs=56.5

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCC------ccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCC
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGG------SKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPT   79 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g   79 (180)
                      .|+||+.     +.+|+++..++++....      ........+++++++++|+|+.|+|+.     +++.+.+++||++
T Consensus       159 ~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~-----ii~~~~l~~~k~~  233 (287)
T TIGR02853       159 FGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPAL-----VLTADVLSKLPKH  233 (287)
T ss_pred             ChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChH-----HhCHHHHhcCCCC
Confidence            6788885     34677777776654321      011224557889999999999999974     7889999999999


Q ss_pred             cEEEecCCC-CccCH
Q psy5266          80 AILINTSRG-GLLDQ   93 (180)
Q Consensus        80 ~~lvn~~Rg-~~vd~   93 (180)
                      +++||++-. .-.|.
T Consensus       234 aliIDlas~Pg~tdf  248 (287)
T TIGR02853       234 AVIIDLASKPGGTDF  248 (287)
T ss_pred             eEEEEeCcCCCCCCH
Confidence            999999764 33444

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=97.17  E-value=0.00016  Score=60.21  Aligned_cols=103  Identities=17%  Similarity=0.138  Sum_probs=71.4

Q ss_pred             cCCccccc-----eeeeEEEeccccccCCc----cceeeccCHHHHhccCCEEEEccCCCCCCccee-C-HhHHhccCCC
Q psy5266          11 TGTPGQVH-----LIVCVLIRYHVDLTGGS----KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLI-G-RKQFSLMKPT   79 (180)
Q Consensus        11 ~G~iG~~~-----~~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glI-g-~~~i~~mk~g   79 (180)
                      .|.+|+..     -.|..+..||++.....    .+.....+.++++++||+|++++|..+....++ + .+.+..++++
T Consensus         7 ~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~g   86 (291)
T TIGR01505         7 LGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKPG   86 (291)
T ss_pred             ecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHhhcCCCC
Confidence            46777641     12456677776643211    122345688999999999999999876666554 3 3456778999


Q ss_pred             cEEEecCCCCccCHHHHHHHHhcCCcceEEeecC
Q psy5266          80 AILINTSRGGLLDQEALVEFLRDKKIGGAGLDVM  113 (180)
Q Consensus        80 ~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~  113 (180)
                      .+++|+++....+...+.+.+++..+..+.-+++
T Consensus        87 ~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~  120 (291)
T TIGR01505        87 KTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVS  120 (291)
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCC
Confidence            9999999988777788999888766554444444

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=97.15  E-value=0.00045  Score=57.51  Aligned_cols=105  Identities=15%  Similarity=0.088  Sum_probs=72.7

Q ss_pred             cCCccccc-----eeeeEEEeccccccCCc----cceeeccCHHHHhccCCEEEEccCCCCCCcceeC--HhHHhccCCC
Q psy5266          11 TGTPGQVH-----LIVCVLIRYHVDLTGGS----KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIG--RKQFSLMKPT   79 (180)
Q Consensus        11 ~G~iG~~~-----~~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg--~~~i~~mk~g   79 (180)
                      +|.+|+.+     -.|..+..||++.....    .+.....++++++++||+|++++|-......++.  .+.+..+++|
T Consensus        10 ~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g   89 (296)
T PRK11559         10 LGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPG   89 (296)
T ss_pred             cCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhcCCCC
Confidence            56777651     12456677877653211    1223456899999999999999998777666653  2356678999


Q ss_pred             cEEEecCCCCccCHHHHHHHHhcCCcceEEeecCCC
Q psy5266          80 AILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIP  115 (180)
Q Consensus        80 ~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~  115 (180)
                      .++++++........++.+.+++..+.++-.+|+-.
T Consensus        90 ~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~  125 (296)
T PRK11559         90 TVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGG  125 (296)
T ss_pred             cEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCC
Confidence            999999998877777888888876665544455533

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=97.06  E-value=0.00063  Score=59.99  Aligned_cols=85  Identities=20%  Similarity=0.237  Sum_probs=63.6

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCcc---ceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGSK---QVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL   82 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~l   82 (180)
                      .|.||+.     ..+|+++..+|.+......   .-+...+++++++.+|+|+.+.    .+.++|+...+..||+|+++
T Consensus       220 ~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDVVI~aT----G~~~vI~~~~~~~mK~Gail  295 (425)
T PRK05476        220 YGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIFVTAT----GNKDVITAEHMEAMKDGAIL  295 (425)
T ss_pred             CCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCEEEECC----CCHHHHHHHHHhcCCCCCEE
Confidence            5777774     3567888888766543111   1124568999999999998764    46789999999999999999


Q ss_pred             EecCCCCc-cCHHHHHHH
Q psy5266          83 INTSRGGL-LDQEALVEF   99 (180)
Q Consensus        83 vn~~Rg~~-vd~~al~~~   99 (180)
                      +|+++... ++.++|.+.
T Consensus       296 iNvG~~d~Eid~~~L~~~  313 (425)
T PRK05476        296 ANIGHFDNEIDVAALEEL  313 (425)
T ss_pred             EEcCCCCCccChHHHhhc
Confidence            99999764 788877653

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=96.73  E-value=0.00047  Score=61.09  Aligned_cols=75  Identities=17%  Similarity=0.090  Sum_probs=58.4

Q ss_pred             cCCccccceeeeEEEeccccc-----------cCCcc---ceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhcc
Q psy5266          11 TGTPGQVHLIVCVLIRYHVDL-----------TGGSK---QVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLM   76 (180)
Q Consensus        11 ~G~iG~~~~~~~~~~~~~~~~-----------~~~~~---~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~m   76 (180)
                      +|++|+.|.++++..+.+..+           ..+..   .-+...+++|.+++||+|.+.+|.+ . .+.+..+.+..|
T Consensus        44 yGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADvVviLlPDt-~-q~~v~~~i~p~L  121 (487)
T PRK05225         44 CGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDK-Q-HSDVVRAVQPLM  121 (487)
T ss_pred             cCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCEEEEcCChH-H-HHHHHHHHHhhC
Confidence            799999999999988876651           11111   2246678999999999999999999 4 888889999999


Q ss_pred             CCCcEEEecCCC
Q psy5266          77 KPTAILINTSRG   88 (180)
Q Consensus        77 k~g~~lvn~~Rg   88 (180)
                      |+|+.+. .++|
T Consensus       122 K~Ga~L~-fsHG  132 (487)
T PRK05225        122 KQGAALG-YSHG  132 (487)
T ss_pred             CCCCEEE-ecCC
Confidence            9997774 3444

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=96.72  E-value=0.0012  Score=50.80  Aligned_cols=84  Identities=18%  Similarity=0.209  Sum_probs=55.1

Q ss_pred             CCcccc-----ceeeeEEEeccccccCCccc---eeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEE
Q psy5266          12 GTPGQV-----HLIVCVLIRYHVDLTGGSKQ---VYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILI   83 (180)
Q Consensus        12 G~iG~~-----~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lv   83 (180)
                      |.+|+.     +.+|+++..++.+.....+.   -++..++++.++++|+++...    -...+|..+.|.+||+|+++.
T Consensus        32 G~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vtaT----G~~~vi~~e~~~~mkdgail~  107 (162)
T PF00670_consen   32 GKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTAT----GNKDVITGEHFRQMKDGAILA  107 (162)
T ss_dssp             SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-S----SSSSSB-HHHHHHS-TTEEEE
T ss_pred             CcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEECC----CCccccCHHHHHHhcCCeEEe
Confidence            566664     35677777777766542221   245678999999999988773    346889999999999999999


Q ss_pred             ecCCC-CccCHHHHHHH
Q psy5266          84 NTSRG-GLLDQEALVEF   99 (180)
Q Consensus        84 n~~Rg-~~vd~~al~~~   99 (180)
                      |++.. .-+|.+.|.+.
T Consensus       108 n~Gh~d~Eid~~~L~~~  124 (162)
T PF00670_consen  108 NAGHFDVEIDVDALEAN  124 (162)
T ss_dssp             ESSSSTTSBTHHHHHTC
T ss_pred             ccCcCceeEeecccccc
Confidence            99874 34777766654

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.30  E-value=0.0022  Score=53.70  Aligned_cols=102  Identities=16%  Similarity=0.160  Sum_probs=72.4

Q ss_pred             cCCccccc-----eeeeEEEeccccccCCc----cceeeccCHHHHhcc---CCEEEEccCCCCCCcceeCHhHHhccCC
Q psy5266          11 TGTPGQVH-----LIVCVLIRYHVDLTGGS----KQVYLILVIRTRSAQ---SDFIFVTCALTKDTEQLIGRKQFSLMKP   78 (180)
Q Consensus        11 ~G~iG~~~-----~~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~---~D~v~~h~pl~~~T~glIg~~~i~~mk~   78 (180)
                      .|++|+.+     -.+..+..||++.....    .+.....+.+++.++   +|+|++++|-.+.+..++ .+.+..+++
T Consensus         8 lG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~-~~i~~~l~~   86 (299)
T PRK12490          8 LGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI-KDLYPLLSP   86 (299)
T ss_pred             ccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH-HHHhccCCC
Confidence            46677641     12345667776643211    123356689999876   699999999776777777 356667889


Q ss_pred             CcEEEecCCCCccCHHHHHHHHhcCCcceEEeecC
Q psy5266          79 TAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVM  113 (180)
Q Consensus        79 g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~  113 (180)
                      |.++|+++.....+..++.+.+++..+..+-.+|+
T Consensus        87 g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~  121 (299)
T PRK12490         87 GDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTS  121 (299)
T ss_pred             CCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCC
Confidence            99999999999888889999888877765554555

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=95.98  E-value=0.01  Score=49.67  Aligned_cols=105  Identities=14%  Similarity=0.071  Sum_probs=73.7

Q ss_pred             cCCccccc---e--eeeEEEeccccccCCc----cceeeccCHHHHhccCCEEEEccCCCCCCcceeC--HhHHhccCCC
Q psy5266          11 TGTPGQVH---L--IVCVLIRYHVDLTGGS----KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIG--RKQFSLMKPT   79 (180)
Q Consensus        11 ~G~iG~~~---~--~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg--~~~i~~mk~g   79 (180)
                      .|.+|...   +  -|..+..||++.....    .+.....+..+++++||+|++++|-.......+.  .+.+..+++|
T Consensus         9 lG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g   88 (296)
T PRK15461          9 LGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSRD   88 (296)
T ss_pred             eCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccHhhcCCCC
Confidence            46666641   0  1346777877654311    1223466889999999999999997765555543  2345668889


Q ss_pred             cEEEecCCCCccCHHHHHHHHhcCCcceEEeecCCC
Q psy5266          80 AILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIP  115 (180)
Q Consensus        80 ~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~  115 (180)
                      .++|+++.........+.+.+++..+...-.+|+-.
T Consensus        89 ~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~  124 (296)
T PRK15461         89 ALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRT  124 (296)
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCC
Confidence            999999999988888999999888876665556543

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=95.73  E-value=0.0071  Score=50.32  Aligned_cols=103  Identities=10%  Similarity=-0.021  Sum_probs=65.9

Q ss_pred             cCCcccc---ce--eeeEEEeccccccCCc----cceeeccCHHHHhccCCEEEEccCCCCCCcceeC--HhHHhccCCC
Q psy5266          11 TGTPGQV---HL--IVCVLIRYHVDLTGGS----KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIG--RKQFSLMKPT   79 (180)
Q Consensus        11 ~G~iG~~---~~--~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg--~~~i~~mk~g   79 (180)
                      +|.+|+.   ++  -|..+..||++.....    .+.....++.++.++||+|++++|-......++.  .+....+++|
T Consensus         4 lG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~~~g   83 (288)
T TIGR01692         4 LGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKVAKG   83 (288)
T ss_pred             ccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcCCCC
Confidence            4666664   11  1345677776644211    1223456899999999999999997666565552  3455678889


Q ss_pred             cEEEecCCCCccCHHHHHHHHhcCCcceEEeecC
Q psy5266          80 AILINTSRGGLLDQEALVEFLRDKKIGGAGLDVM  113 (180)
Q Consensus        80 ~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~  113 (180)
                      .++|+++--..-....+.+.+++..+.+.-.+|+
T Consensus        84 ~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~  117 (288)
T TIGR01692        84 SLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVS  117 (288)
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCC
Confidence            9999998444334456777777666655444454

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=95.66  E-value=0.01  Score=49.92  Aligned_cols=72  Identities=15%  Similarity=0.188  Sum_probs=53.1

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCc------cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCC
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGS------KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPT   79 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g   79 (180)
                      .|.+|+.     +.+|+.+..++.+.....      .....+.++.+.++++|+|+.++|.     .+++++.++.|+++
T Consensus       160 ~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~~i~~~~l~~~~~g  234 (296)
T PRK08306        160 FGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-----LVLTKEVLSKMPPE  234 (296)
T ss_pred             CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-----hhhhHHHHHcCCCC
Confidence            5777764     357888888877754210      0112345788999999999999883     57899999999999


Q ss_pred             cEEEecCC
Q psy5266          80 AILINTSR   87 (180)
Q Consensus        80 ~~lvn~~R   87 (180)
                      .++|+++-
T Consensus       235 ~vIIDla~  242 (296)
T PRK08306        235 ALIIDLAS  242 (296)
T ss_pred             cEEEEEcc
Confidence            99998864

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=95.37  E-value=0.017  Score=50.91  Aligned_cols=84  Identities=21%  Similarity=0.259  Sum_probs=59.6

Q ss_pred             cCCcccc-----ceeeeEEEeccccccC--Cccce-eeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTG--GSKQV-YLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL   82 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~--~~~~~-~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~l   82 (180)
                      .|.||+.     +.+|+++..+|.+...  ..... +...++++.++.+|+|+.+.    .+.++|+.+.+..||+|.++
T Consensus       210 ~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDVVI~at----G~~~~i~~~~l~~mk~Ggil  285 (413)
T cd00401         210 YGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFVTTT----GNKDIITGEHFEQMKDGAIV  285 (413)
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCEEEECC----CCHHHHHHHHHhcCCCCcEE
Confidence            5677764     3577788877665432  11111 23446788999999998763    35678999999999999999


Q ss_pred             EecCCCCc-cCHHHHHH
Q psy5266          83 INTSRGGL-LDQEALVE   98 (180)
Q Consensus        83 vn~~Rg~~-vd~~al~~   98 (180)
                      +|+++..+ ++...+..
T Consensus       286 vnvG~~~~eId~~~L~~  302 (413)
T cd00401         286 CNIGHFDVEIDVKGLKE  302 (413)
T ss_pred             EEeCCCCCccCHHHHHh
Confidence            99999764 66666554

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=95.36  E-value=0.011  Score=49.49  Aligned_cols=102  Identities=15%  Similarity=0.102  Sum_probs=71.6

Q ss_pred             cCCccccc-----eeeeEEEeccccccCCc----cceeeccCHHHHhcc---CCEEEEccCCCCCCcceeCHhHHhccCC
Q psy5266          11 TGTPGQVH-----LIVCVLIRYHVDLTGGS----KQVYLILVIRTRSAQ---SDFIFVTCALTKDTEQLIGRKQFSLMKP   78 (180)
Q Consensus        11 ~G~iG~~~-----~~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~---~D~v~~h~pl~~~T~glIg~~~i~~mk~   78 (180)
                      +|.+|+.+     --|.++..||++.....    .+.....+.+++.+.   +|+|++++|-...+..++ .+....+++
T Consensus         8 lG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~l~~~l~~   86 (301)
T PRK09599          8 LGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DELAPLLSP   86 (301)
T ss_pred             ccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HHHHhhCCC
Confidence            56777741     12345677777654311    123345688898876   699999999766667776 356677899


Q ss_pred             CcEEEecCCCCccCHHHHHHHHhcCCcceEEeecC
Q psy5266          79 TAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVM  113 (180)
Q Consensus        79 g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~  113 (180)
                      |.++|+.+.........+.+.+++..+.++-.+|+
T Consensus        87 g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvs  121 (301)
T PRK09599         87 GDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTS  121 (301)
T ss_pred             CCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCC
Confidence            99999999988877888888888888765544454

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=95.31  E-value=0.0074  Score=46.05  Aligned_cols=103  Identities=16%  Similarity=0.121  Sum_probs=68.7

Q ss_pred             cCCcccc---cee--eeEEEeccccccC----CccceeeccCHHHHhccCCEEEEccCCCCCCcceeCH-hHHhccCCCc
Q psy5266          11 TGTPGQV---HLI--VCVLIRYHVDLTG----GSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGR-KQFSLMKPTA   80 (180)
Q Consensus        11 ~G~iG~~---~~~--~~~~~~~~~~~~~----~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~-~~i~~mk~g~   80 (180)
                      +|++|+.   |+.  |..+..||++...    ...+.....++.|+.++||+|++++|-..+...++.. +.+..+++|.
T Consensus         9 lG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~~~l~~g~   88 (163)
T PF03446_consen    9 LGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENILAGLRPGK   88 (163)
T ss_dssp             -SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHGGGS-TTE
T ss_pred             hHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHhhccccce
Confidence            4666664   111  4566778866543    1234567889999999999999999976666555432 3567789999


Q ss_pred             EEEecCCCCccCHHHHHHHHhcCCcceEEeecC
Q psy5266          81 ILINTSRGGLLDQEALVEFLRDKKIGGAGLDVM  113 (180)
Q Consensus        81 ~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~  113 (180)
                      ++|+++-...-....+.+.+++..+.+.-.+|+
T Consensus        89 iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~  121 (163)
T PF03446_consen   89 IIIDMSTISPETSRELAERLAAKGVRYVDAPVS  121 (163)
T ss_dssp             EEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             EEEecCCcchhhhhhhhhhhhhccceeeeeeee
Confidence            999998877777778888888877765555554

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PLN02712 arogenate dehydrogenase

Probab=94.49  E-value=0.012  Score=54.72  Aligned_cols=92  Identities=12%  Similarity=0.147  Sum_probs=63.4

Q ss_pred             cCCccccc-----eeeeEEEeccccccC-Cc--cceeeccCHHHHhc-cCCEEEEccCCCCCCcceeCHhHHhccCCCcE
Q psy5266          11 TGTPGQVH-----LIVCVLIRYHVDLTG-GS--KQVYLILVIRTRSA-QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAI   81 (180)
Q Consensus        11 ~G~iG~~~-----~~~~~~~~~~~~~~~-~~--~~~~~~~~l~~l~~-~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~   81 (180)
                      .|.||+.+     -.|..+.+|+.+... ..  .+.....+++++++ .+|+|++++| ...+..++..-....||+|++
T Consensus       377 lG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP-~~~~~~vi~~l~~~~lk~g~i  455 (667)
T PLN02712        377 FGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTS-ILSTEKVLKSLPFQRLKRSTL  455 (667)
T ss_pred             cCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCC-hHHHHHHHHHHHHhcCCCCcE
Confidence            67788762     134567777766321 00  11223568888876 5999999999 467888887765557999999


Q ss_pred             EEecCCCCccCHHHHHHHHhcC
Q psy5266          82 LINTSRGGLLDQEALVEFLRDK  103 (180)
Q Consensus        82 lvn~~Rg~~vd~~al~~~L~~~  103 (180)
                      +++++...-...+.+.+.+..+
T Consensus       456 vvDv~SvK~~~~~~~~~~l~~~  477 (667)
T PLN02712        456 FVDVLSVKEFPRNLFLQHLPQD  477 (667)
T ss_pred             EEECCCccHHHHHHHHHhccCC
Confidence            9999887755566677776654

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=94.45  E-value=0.0065  Score=51.96  Aligned_cols=46  Identities=15%  Similarity=0.184  Sum_probs=37.4

Q ss_pred             ccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCC
Q psy5266          41 ILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRG   88 (180)
Q Consensus        41 ~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg   88 (180)
                      ..+.++++++||+|++++|.+.. ..+++.+.+..||+|+++ .++.|
T Consensus        64 ~~s~~eaa~~ADVVvLaVPd~~~-~~V~~~~I~~~Lk~g~iL-~~a~G  109 (330)
T PRK05479         64 VLTVAEAAKWADVIMILLPDEVQ-AEVYEEEIEPNLKEGAAL-AFAHG  109 (330)
T ss_pred             eCCHHHHHhcCCEEEEcCCHHHH-HHHHHHHHHhcCCCCCEE-EECCC
Confidence            45899999999999999997654 777777778889999877 55555

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=94.17  E-value=0.11  Score=44.54  Aligned_cols=78  Identities=13%  Similarity=0.047  Sum_probs=56.1

Q ss_pred             eeEEEeccccccCCc---------cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCcc
Q psy5266          21 VCVLIRYHVDLTGGS---------KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLL   91 (180)
Q Consensus        21 ~~~~~~~~~~~~~~~---------~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~v   91 (180)
                      |-.+..||+++....         .+.....+..++.++||+|++++|-...+..++ .+.+..+++|.++|+++-   +
T Consensus        43 GheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~GaIVID~ST---I  118 (341)
T TIGR01724        43 GHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENAVICNTCT---V  118 (341)
T ss_pred             CCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCCEEEECCC---C
Confidence            344677777654321         233566789999999999999999777777777 568888999999999854   4


Q ss_pred             CHHHHHHHHhc
Q psy5266          92 DQEALVEFLRD  102 (180)
Q Consensus        92 d~~al~~~L~~  102 (180)
                      +.+.+.+.|+.
T Consensus       119 sP~t~~~~~e~  129 (341)
T TIGR01724       119 SPVVLYYSLEK  129 (341)
T ss_pred             CHHHHHHHHHH
Confidence            45555555444

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=93.83  E-value=0.084  Score=44.34  Aligned_cols=107  Identities=16%  Similarity=0.096  Sum_probs=80.8

Q ss_pred             cCCcccc---cee--eeEEEeccccccCCc-----cceeeccCHHHHhccCCEEEEccCCCCCCcceeC--HhHHhccCC
Q psy5266          11 TGTPGQV---HLI--VCVLIRYHVDLTGGS-----KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIG--RKQFSLMKP   78 (180)
Q Consensus        11 ~G~iG~~---~~~--~~~~~~~~~~~~~~~-----~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg--~~~i~~mk~   78 (180)
                      +|..|+-   |++  |-.+..||.+..+..     .+.....+..|..+++|+|+.++|-.+.-+.++-  .+.++.+|+
T Consensus         8 LG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~   87 (286)
T COG2084           8 LGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKP   87 (286)
T ss_pred             CchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccchhhcCCC
Confidence            5666664   122  355677777766511     2345677889999999999999998877666664  678888999


Q ss_pred             CcEEEecCCCCccCHHHHHHHHhcCCcceEEeecCCCCC
Q psy5266          79 TAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEP  117 (180)
Q Consensus        79 g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep  117 (180)
                      |.++|+.+--..-....+.+.+++.-+..+--+|+-..+
T Consensus        88 G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~  126 (286)
T COG2084          88 GAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVP  126 (286)
T ss_pred             CCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCch
Confidence            999999988877778889999999888777667765555

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=92.93  E-value=0.2  Score=44.80  Aligned_cols=96  Identities=15%  Similarity=0.118  Sum_probs=75.0

Q ss_pred             eeEEEeccccccCC---cc------ceeeccCHHHHhcc---CCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCC
Q psy5266          21 VCVLIRYHVDLTGG---SK------QVYLILVIRTRSAQ---SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRG   88 (180)
Q Consensus        21 ~~~~~~~~~~~~~~---~~------~~~~~~~l~~l~~~---~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg   88 (180)
                      |-.+..||.+....   .+      +.....+++++.++   +|+|.+.+|-.+.+..+| .+.+..|++|.++|..+-.
T Consensus        13 G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l~~GdiiID~gn~   91 (459)
T PRK09287         13 GYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLLEKGDIIIDGGNS   91 (459)
T ss_pred             CCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcCCCCCEEEECCCC
Confidence            34567787776531   11      25567899999985   899999999888888888 4678889999999999887


Q ss_pred             CccCHHHHHHHHhcCCcceEEeecCCCCC
Q psy5266          89 GLLDQEALVEFLRDKKIGGAGLDVMIPEP  117 (180)
Q Consensus        89 ~~vd~~al~~~L~~~~i~~~~lDv~~~ep  117 (180)
                      ..-+.....+.+++..+.++..+|+-.++
T Consensus        92 ~~~~t~~~~~~l~~~Gi~fvdapVSGG~~  120 (459)
T PRK09287         92 NYKDTIRREKELAEKGIHFIGMGVSGGEE  120 (459)
T ss_pred             CHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence            77778888888988888888888876554

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=92.87  E-value=0.12  Score=46.55  Aligned_cols=106  Identities=13%  Similarity=0.060  Sum_probs=79.6

Q ss_pred             cCCccccc---e--eeeEEEeccccccCCc---c-----c---eeeccCHHHHhcc---CCEEEEccCCCCCCcceeCHh
Q psy5266          11 TGTPGQVH---L--IVCVLIRYHVDLTGGS---K-----Q---VYLILVIRTRSAQ---SDFIFVTCALTKDTEQLIGRK   71 (180)
Q Consensus        11 ~G~iG~~~---~--~~~~~~~~~~~~~~~~---~-----~---~~~~~~l~~l~~~---~D~v~~h~pl~~~T~glIg~~   71 (180)
                      +|.+|+.+   +  =|..+..||++.....   +     +   .....+++|+.+.   +|+|++++|-.+....++ .+
T Consensus        14 LG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~~Vi-~g   92 (493)
T PLN02350         14 LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVDQTI-KA   92 (493)
T ss_pred             eHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHHHHH-HH
Confidence            56666641   1  1456777877654311   1     1   1245689998876   999999999888888888 56


Q ss_pred             HHhccCCCcEEEecCCCCccCHHHHHHHHhcCCcceEEeecCCCCC
Q psy5266          72 QFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEP  117 (180)
Q Consensus        72 ~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep  117 (180)
                      .+..|++|.++|+.+-...-+...+.+.+++..+.++..+|+-.++
T Consensus        93 l~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~  138 (493)
T PLN02350         93 LSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE  138 (493)
T ss_pred             HHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence            7888999999999988887888889999999889888888886555

>PLN02858 fructose-bisphosphate aldolase

Probab=92.79  E-value=0.05  Score=54.64  Aligned_cols=104  Identities=13%  Similarity=-0.045  Sum_probs=73.2

Q ss_pred             cCCccccc-----eeeeEEEeccccccCCc----cceeeccCHHHHhccCCEEEEccCCCCCCccee--CHhHHhccCCC
Q psy5266          11 TGTPGQVH-----LIVCVLIRYHVDLTGGS----KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLI--GRKQFSLMKPT   79 (180)
Q Consensus        11 ~G~iG~~~-----~~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glI--g~~~i~~mk~g   79 (180)
                      +|.+|..+     -.|..+..||.+.....    .+.....+..++.++||+|++++|-...+..++  ..+.+..+++|
T Consensus       332 lG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g  411 (1378)
T PLN02858        332 LGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLGAVSALPAG  411 (1378)
T ss_pred             chHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhhHHhcCCCC
Confidence            56666531     12446777876654311    122346789999999999999999888777776  34577889999


Q ss_pred             cEEEecCCCCccCHHHHHHHHhc--CCcceEEeecCC
Q psy5266          80 AILINTSRGGLLDQEALVEFLRD--KKIGGAGLDVMI  114 (180)
Q Consensus        80 ~~lvn~~Rg~~vd~~al~~~L~~--~~i~~~~lDv~~  114 (180)
                      .++|+.+-...-....+.+.+++  ..+..+--+|+-
T Consensus       412 ~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsG  448 (1378)
T PLN02858        412 ASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSG  448 (1378)
T ss_pred             CEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCC
Confidence            99999987766666678888877  666555555653

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=92.55  E-value=0.064  Score=44.93  Aligned_cols=76  Identities=13%  Similarity=0.096  Sum_probs=54.4

Q ss_pred             eeccCHHHHhccCCEEEEccCCCCCCccee-C-HhHHhccCCCcEEEecCCCCccCHHHHHHHHhcCCcceEEeecCC
Q psy5266          39 YLILVIRTRSAQSDFIFVTCALTKDTEQLI-G-RKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMI  114 (180)
Q Consensus        39 ~~~~~l~~l~~~~D~v~~h~pl~~~T~glI-g-~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~  114 (180)
                      ....+..++.++||+|++++|-.+.....+ + .+.+..+++|.++|+++-...-....+.+.+++..+.++--+|+-
T Consensus        44 ~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsG  121 (292)
T PRK15059         44 VSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSG  121 (292)
T ss_pred             eecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCC
Confidence            356688899999999999999765555544 2 234566888999999977666666677777777666555445554

>PLN02712 arogenate dehydrogenase

Probab=92.16  E-value=0.046  Score=50.98  Aligned_cols=91  Identities=14%  Similarity=0.184  Sum_probs=58.0

Q ss_pred             cCCccccc-----eeeeEEEeccccccC-C--ccceeeccCHHHHh-ccCCEEEEccCCCCCCcceeCHhHHhccCCCcE
Q psy5266          11 TGTPGQVH-----LIVCVLIRYHVDLTG-G--SKQVYLILVIRTRS-AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAI   81 (180)
Q Consensus        11 ~G~iG~~~-----~~~~~~~~~~~~~~~-~--~~~~~~~~~l~~l~-~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~   81 (180)
                      .|.||+.+     -.|..+.+|+.+... .  ..+.....++++++ .+||+|++++|. ..+..++..-.+..+|++++
T Consensus        60 ~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~l~~~~l~~g~i  138 (667)
T PLN02712         60 FGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKSLPLQRLKRNTL  138 (667)
T ss_pred             cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHhhhhhcCCCCeE
Confidence            68888862     123466677665321 0  01223456788866 569999999995 46788887654567899999


Q ss_pred             EEecCCCCccCHHHHHHHHhc
Q psy5266          82 LINTSRGGLLDQEALVEFLRD  102 (180)
Q Consensus        82 lvn~~Rg~~vd~~al~~~L~~  102 (180)
                      +++++.-...-.+.+.+.+.+
T Consensus       139 VvDv~SvK~~~~~~l~~~l~~  159 (667)
T PLN02712        139 FVDVLSVKEFAKNLLLDYLPE  159 (667)
T ss_pred             EEECCCCcHHHHHHHHHhcCC
Confidence            999964332223455666544

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=92.02  E-value=0.045  Score=49.02  Aligned_cols=106  Identities=15%  Similarity=0.094  Sum_probs=77.9

Q ss_pred             cCCccccc-----eeeeEEEeccccccCC---cc-----c--eeeccCHHHHhc---cCCEEEEccCCCCCCcceeCHhH
Q psy5266          11 TGTPGQVH-----LIVCVLIRYHVDLTGG---SK-----Q--VYLILVIRTRSA---QSDFIFVTCALTKDTEQLIGRKQ   72 (180)
Q Consensus        11 ~G~iG~~~-----~~~~~~~~~~~~~~~~---~~-----~--~~~~~~l~~l~~---~~D~v~~h~pl~~~T~glIg~~~   72 (180)
                      +|.+|+..     --|..+..||.+....   .+     +  .....+++|+++   ++|+|.+.+|-...+..+| .+.
T Consensus         9 LG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~~vi-~~l   87 (470)
T PTZ00142          9 LAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVDETI-DNL   87 (470)
T ss_pred             EhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHHHHH-HHH
Confidence            46666641     0134677787766541   11     1  235678999987   4899999999888888888 456


Q ss_pred             HhccCCCcEEEecCCCCccCHHHHHHHHhcCCcceEEeecCCCCC
Q psy5266          73 FSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEP  117 (180)
Q Consensus        73 i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep  117 (180)
                      +..+++|.++|+.+.+..-+.....+.+++..+.++..+|+-.++
T Consensus        88 ~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~  132 (470)
T PTZ00142         88 LPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE  132 (470)
T ss_pred             HhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH
Confidence            778999999999998888888888888988888877777776544

>PLN02256 arogenate dehydrogenase

Probab=91.40  E-value=0.06  Score=45.49  Aligned_cols=92  Identities=11%  Similarity=0.121  Sum_probs=59.9

Q ss_pred             cCCccccc-----eeeeEEEeccccccCC---ccceeeccCHHHHh-ccCCEEEEccCCCCCCcceeCHhHHhccCCCcE
Q psy5266          11 TGTPGQVH-----LIVCVLIRYHVDLTGG---SKQVYLILVIRTRS-AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAI   81 (180)
Q Consensus        11 ~G~iG~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~l~~l~-~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~   81 (180)
                      .|.||+.+     -.|..+.+|+++....   ..+.....++++++ ..+|+|++++|-. .+..++..-....++++++
T Consensus        44 ~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~-~~~~vl~~l~~~~l~~~~i  122 (304)
T PLN02256         44 FGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSIL-STEAVLRSLPLQRLKRSTL  122 (304)
T ss_pred             eCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHH-HHHHHHHhhhhhccCCCCE
Confidence            57778762     1234566777664210   01122356788886 4799999999954 6677775543556889999


Q ss_pred             EEecCCCCccCHHHHHHHHhcC
Q psy5266          82 LINTSRGGLLDQEALVEFLRDK  103 (180)
Q Consensus        82 lvn~~Rg~~vd~~al~~~L~~~  103 (180)
                      +++++...-...+++.+.+..+
T Consensus       123 viDv~SvK~~~~~~~~~~l~~~  144 (304)
T PLN02256        123 FVDVLSVKEFPKNLLLQVLPEE  144 (304)
T ss_pred             EEecCCchHHHHHHHHHhCCCC
Confidence            9999886555566777776553

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=91.00  E-value=0.039  Score=46.39  Aligned_cols=72  Identities=17%  Similarity=0.222  Sum_probs=45.8

Q ss_pred             cCCccccceeeeEEEeccccccCCccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHh--ccCCCcEEEecCCC
Q psy5266          11 TGTPGQVHLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFS--LMKPTAILINTSRG   88 (180)
Q Consensus        11 ~G~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~--~mk~g~~lvn~~Rg   88 (180)
                      +|.+|+.  ++.++...+.++..|.+.  ...++++++++||+|++++|. .....++.  .+.  .++++.++++.++|
T Consensus        12 ~G~~G~~--lA~~l~~~G~~V~~~~r~--~~~~~~~~~~~advvi~~vp~-~~~~~v~~--~l~~~~~~~~~ivi~~s~g   84 (308)
T PRK14619         12 AGAWGST--LAGLASANGHRVRVWSRR--SGLSLAAVLADADVIVSAVSM-KGVRPVAE--QVQALNLPPETIIVTATKG   84 (308)
T ss_pred             ccHHHHH--HHHHHHHCCCEEEEEeCC--CCCCHHHHHhcCCEEEEECCh-HHHHHHHH--HHHHhcCCCCcEEEEeCCc
Confidence            5777776  544443222222222211  126789999999999999996 46666663  343  47788999998875


Q ss_pred             C
Q psy5266          89 G   89 (180)
Q Consensus        89 ~   89 (180)
                      -
T Consensus        85 i   85 (308)
T PRK14619         85 L   85 (308)
T ss_pred             c
Confidence            3

>TIGR00518 alaDH alanine dehydrogenase

Probab=90.85  E-value=0.35  Score=41.97  Aligned_cols=76  Identities=12%  Similarity=0.235  Sum_probs=52.9

Q ss_pred             cCCcccc-----ceeeeEEEeccccccC-------Cccce----eeccCHHHHhccCCEEEEccCCC-CCCcceeCHhHH
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTG-------GSKQV----YLILVIRTRSAQSDFIFVTCALT-KDTEQLIGRKQF   73 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~-------~~~~~----~~~~~l~~l~~~~D~v~~h~pl~-~~T~glIg~~~i   73 (180)
                      .|.+|+.     ..+|+++..+|.+...       +....    ....++.+.++++|+|+.+++.. ..+..+|+.+.+
T Consensus       175 aG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~p~lit~~~l  254 (370)
T TIGR00518       175 GGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKAPKLVSNSLV  254 (370)
T ss_pred             CCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCCCcCcCHHHH
Confidence            4555553     2467788888876421       11111    11246788899999999998764 346678999999


Q ss_pred             hccCCCcEEEecC
Q psy5266          74 SLMKPTAILINTS   86 (180)
Q Consensus        74 ~~mk~g~~lvn~~   86 (180)
                      ++||++.++++++
T Consensus       255 ~~mk~g~vIvDva  267 (370)
T TIGR00518       255 AQMKPGAVIVDVA  267 (370)
T ss_pred             hcCCCCCEEEEEe
Confidence            9999999998875

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=90.73  E-value=0.19  Score=43.67  Aligned_cols=71  Identities=14%  Similarity=0.168  Sum_probs=45.5

Q ss_pred             cCCccccceeeeEEEeccccccCCccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCC
Q psy5266          11 TGTPGQVHLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRG   88 (180)
Q Consensus        11 ~G~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg   88 (180)
                      +|.+|+.  |+..+...+..+..+...  ...+.++++++||+|++++|... +..++. + +..+++|++++.++.-
T Consensus       107 ~GlmG~s--lA~~l~~~G~~V~~~d~~--~~~~~~~~~~~aDlVilavP~~~-~~~~~~-~-l~~l~~~~iv~Dv~Sv  177 (374)
T PRK11199        107 KGQLGRL--FAKMLTLSGYQVRILEQD--DWDRAEDILADAGMVIVSVPIHL-TEEVIA-R-LPPLPEDCILVDLTSV  177 (374)
T ss_pred             CChhhHH--HHHHHHHCCCeEEEeCCC--cchhHHHHHhcCCEEEEeCcHHH-HHHHHH-H-HhCCCCCcEEEECCCc
Confidence            5777787  554444333333222211  12467889999999999999763 456662 2 4448889999988543

>PLN02858 fructose-bisphosphate aldolase

Probab=90.31  E-value=0.14  Score=51.47  Aligned_cols=104  Identities=10%  Similarity=-0.054  Sum_probs=72.6

Q ss_pred             cCCcccc---ce--eeeEEEeccccccCCc----cceeeccCHHHHhccCCEEEEccCCCCCCccee--CHhHHhccCCC
Q psy5266          11 TGTPGQV---HL--IVCVLIRYHVDLTGGS----KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLI--GRKQFSLMKPT   79 (180)
Q Consensus        11 ~G~iG~~---~~--~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glI--g~~~i~~mk~g   79 (180)
                      +|.+|..   ++  =|-.+..||.+.....    .+.....+..|+.++||+|++++|-.+....++  ..+.+..+++|
T Consensus        12 LG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g~~~~l~~g   91 (1378)
T PLN02858         12 LDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGAAKGLQKG   91 (1378)
T ss_pred             hhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhhHHhcCCCc
Confidence            5666664   11  1344567777654311    223467799999999999999999887777775  34667789999


Q ss_pred             cEEEecCCCCccCHHHHHHHHhcCC--cceEEeecCC
Q psy5266          80 AILINTSRGGLLDQEALVEFLRDKK--IGGAGLDVMI  114 (180)
Q Consensus        80 ~~lvn~~Rg~~vd~~al~~~L~~~~--i~~~~lDv~~  114 (180)
                      .++|+++--..-....+.+.+++..  +..+-.+|+-
T Consensus        92 ~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsG  128 (1378)
T PLN02858         92 AVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSK  128 (1378)
T ss_pred             CEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcC
Confidence            9999998766666677887777766  6555555653

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=89.84  E-value=0.43  Score=40.09  Aligned_cols=42  Identities=14%  Similarity=0.312  Sum_probs=35.1

Q ss_pred             ccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCC
Q psy5266          41 ILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGG   89 (180)
Q Consensus        41 ~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~   89 (180)
                      ..+|++.+++||||+..++    +.++|+.   ..+|+|+++|+++-..
T Consensus       192 t~~l~~~~~~ADIVV~avG----~~~~i~~---~~ik~gavVIDVGin~  233 (285)
T PRK14189        192 TRDLAAHTRQADIVVAAVG----KRNVLTA---DMVKPGATVIDVGMNR  233 (285)
T ss_pred             CCCHHHHhhhCCEEEEcCC----CcCccCH---HHcCCCCEEEEccccc
Confidence            3579999999999999999    5578887   6689999999987443

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=89.70  E-value=0.36  Score=43.36  Aligned_cols=102  Identities=16%  Similarity=0.196  Sum_probs=63.4

Q ss_pred             HHHHhccCCEEEEccCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc---------cCHHHHHHHHhcCCcceE
Q psy5266          44 IRTRSAQSDFIFVTCALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL---------LDQEALVEFLRDKKIGGA  108 (180)
Q Consensus        44 l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~---------vd~~al~~~L~~~~i~~~  108 (180)
                      ++.+++..+     ..+.++|.+++|.+.+++     ++. |+.++-+.+...         +....+.++++.+|++..
T Consensus       241 ~d~~~R~~~-----~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~  315 (476)
T PTZ00075        241 IDGIFRATD-----VMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVT  315 (476)
T ss_pred             HHHHHHhcC-----CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEE
Confidence            455665553     478899999999999996     454 766655533211         112347788999999544


Q ss_pred             EeecCCCCCCCCCCCCCC------C-Cceee---cccCHHHHHHHHHccccccccccCCCCCCCC
Q psy5266         109 GLDVMIPEPLPADHPLVQ------L-DNCGN---GLLDQEALVEFLRDKKIGGAGLDVMIPEPMP  163 (180)
Q Consensus       109 ~lDv~~~ep~~~~~~l~~------~-~Nv~~---g~~~~~al~~~L~~g~l~ga~ldV~~~Eplp  163 (180)
                      +      .   .+..+++      + ++.++   |..+.+..+++|+.+.    ++|+++.+|..
T Consensus       316 a------t---Gt~~iI~~e~~~~MKpGAiLINvGr~d~Ei~i~aL~~~~----~vdv~evep~v  367 (476)
T PTZ00075        316 A------T---GNKDIITLEHMRRMKNNAIVGNIGHFDNEIQVAELEAYP----GIEIVEIKPQV  367 (476)
T ss_pred             C------C---CcccccCHHHHhccCCCcEEEEcCCCchHHhHHHHHhcC----CceeecccCCC
Confidence            3      1   1223333      2 22222   3447888888888652    68888888744

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=88.95  E-value=0.87  Score=39.64  Aligned_cols=57  Identities=21%  Similarity=0.374  Sum_probs=48.0

Q ss_pred             eeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCC-ccCHHHHHHH
Q psy5266          39 YLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGG-LLDQEALVEF   99 (180)
Q Consensus        39 ~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~-~vd~~al~~~   99 (180)
                      +++.++++..+.+||++-+.    .+.++|..+.+..||.|+++-|.++=. -|+...|++.
T Consensus       253 f~V~~m~~Aa~~gDifiT~T----GnkdVi~~eh~~~MkDgaIl~N~GHFd~EI~~~~L~~~  310 (420)
T COG0499         253 FRVMTMEEAAKTGDIFVTAT----GNKDVIRKEHFEKMKDGAILANAGHFDVEIDVAGLEEL  310 (420)
T ss_pred             cEEEEhHHhhhcCCEEEEcc----CCcCccCHHHHHhccCCeEEecccccceeccHHHHHHh
Confidence            67889999999999988763    578999999999999999999998643 4777777754

>PRK08655 prephenate dehydrogenase; Provisional

Probab=88.50  E-value=0.24  Score=43.86  Aligned_cols=90  Identities=18%  Similarity=0.161  Sum_probs=55.2

Q ss_pred             cCCccccc-----eeeeEEEeccccccCCc-----cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCc
Q psy5266          11 TGTPGQVH-----LIVCVLIRYHVDLTGGS-----KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTA   80 (180)
Q Consensus        11 ~G~iG~~~-----~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~   80 (180)
                      +|.+|+..     -.|..+..|+++.....     .+.....++++.+++||+|++++|.. .+..++ .+....+++++
T Consensus         9 ~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~-~~~~vl-~~l~~~l~~~~   86 (437)
T PRK08655          9 TGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPIN-VTEDVI-KEVAPHVKEGS   86 (437)
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHH-HHHHHH-HHHHhhCCCCC
Confidence            46677751     01334566665533210     11223457888999999999999964 344555 33445688899


Q ss_pred             EEEecCCCCccCHHHHHHHHhc
Q psy5266          81 ILINTSRGGLLDQEALVEFLRD  102 (180)
Q Consensus        81 ~lvn~~Rg~~vd~~al~~~L~~  102 (180)
                      +++.++.-.....+.+.+.+..
T Consensus        87 iViDvsSvK~~~~~~l~~~~~~  108 (437)
T PRK08655         87 LLMDVTSVKERPVEAMEEYAPE  108 (437)
T ss_pred             EEEEcccccHHHHHHHHHhcCC
Confidence            9999886544445566666554

>PRK08818 prephenate dehydrogenase; Provisional

Probab=88.49  E-value=0.074  Score=46.25  Aligned_cols=67  Identities=13%  Similarity=0.107  Sum_probs=43.2

Q ss_pred             cCCccccceeee--------EEEeccccccCCccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHh-HH-hccCCCc
Q psy5266          11 TGTPGQVHLIVC--------VLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRK-QF-SLMKPTA   80 (180)
Q Consensus        11 ~G~iG~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~-~i-~~mk~g~   80 (180)
                      +|-||+.  |+.        .+.+||+.       .....++++.+++||+|++++|.. .+..+|..- .+ ..+|+++
T Consensus        13 ~GliGgs--lA~alk~~~~~~V~g~D~~-------d~~~~~~~~~v~~aDlVilavPv~-~~~~~l~~l~~~~~~l~~~~   82 (370)
T PRK08818         13 AGAYGRW--LARFLRTRMQLEVIGHDPA-------DPGSLDPATLLQRADVLIFSAPIR-HTAALIEEYVALAGGRAAGQ   82 (370)
T ss_pred             CCHHHHH--HHHHHHhcCCCEEEEEcCC-------ccccCCHHHHhcCCCEEEEeCCHH-HHHHHHHHHhhhhcCCCCCe
Confidence            4778876  433        44455542       122456889999999999999965 344444321 11 3478999


Q ss_pred             EEEecCC
Q psy5266          81 ILINTSR   87 (180)
Q Consensus        81 ~lvn~~R   87 (180)
                      +++.++.
T Consensus        83 iVtDVgS   89 (370)
T PRK08818         83 LWLDVTS   89 (370)
T ss_pred             EEEECCC
Confidence            9998754

>KOG0067|consensus

Probab=87.99  E-value=0.24  Score=43.13  Aligned_cols=35  Identities=11%  Similarity=0.071  Sum_probs=27.8

Q ss_pred             ccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhc
Q psy5266          41 ILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSL   75 (180)
Q Consensus        41 ~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~   75 (180)
                      -.+..++.+-+|+.+.||-+...+.-.++..-+.+
T Consensus       105 g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~h  139 (435)
T KOG0067|consen  105 GYDNIDIKAASELGIAVCNIPSDAVEETADSTLCH  139 (435)
T ss_pred             ccchhhhhhhhhheeeeecccchhHHHHHHHHHHH
Confidence            44788899999999999999888777777765443

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=87.76  E-value=0.76  Score=39.52  Aligned_cols=79  Identities=11%  Similarity=0.060  Sum_probs=53.5

Q ss_pred             eEEEeccccccC---------CccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccC
Q psy5266          22 CVLIRYHVDLTG---------GSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLD   92 (180)
Q Consensus        22 ~~~~~~~~~~~~---------~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd   92 (180)
                      -.+..||++...         ...+.....+..+..++||+|++++|-......++ .+....++++.++++++.+....
T Consensus        44 ~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~IVId~ST~~~~~  122 (342)
T PRK12557         44 HDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENAVICNTCTVSPVV  122 (342)
T ss_pred             CeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCCEEEEecCCCHHH
Confidence            456777765531         11223345688899999999999999443366666 35667788899999998776444


Q ss_pred             H-HHHHHHHh
Q psy5266          93 Q-EALVEFLR  101 (180)
Q Consensus        93 ~-~al~~~L~  101 (180)
                      . +.+.+.+.
T Consensus       123 ~s~~l~~~l~  132 (342)
T PRK12557        123 LYYSLEGELR  132 (342)
T ss_pred             HHHHHHHHhc
Confidence            3 55666664

>KOG1370|consensus

Probab=87.71  E-value=0.91  Score=38.84  Aligned_cols=79  Identities=19%  Similarity=0.236  Sum_probs=57.7

Q ss_pred             CCcccc-----ceeeeEEEeccccccCC---ccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEE
Q psy5266          12 GTPGQV-----HLIVCVLIRYHVDLTGG---SKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILI   83 (180)
Q Consensus        12 G~iG~~-----~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lv   83 (180)
                      |..|+-     .+||++++.-..+...-   +-+-++..+|+|..+++||++-..    ..+.+|-.+.+.+||.++++-
T Consensus       223 GdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~tm~ea~~e~difVTtT----Gc~dii~~~H~~~mk~d~IvC  298 (434)
T KOG1370|consen  223 GDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVTTLEEAIREVDIFVTTT----GCKDIITGEHFDQMKNDAIVC  298 (434)
T ss_pred             CccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEeeeHHHhhhcCCEEEEcc----CCcchhhHHHHHhCcCCcEEe
Confidence            555653     46777777666665531   122368889999999999987653    567899999999999999999


Q ss_pred             ecCCCCc-cCHH
Q psy5266          84 NTSRGGL-LDQE   94 (180)
Q Consensus        84 n~~Rg~~-vd~~   94 (180)
                      |++.-.+ +|..
T Consensus       299 N~Ghfd~EiDv~  310 (434)
T KOG1370|consen  299 NIGHFDTEIDVK  310 (434)
T ss_pred             ccccccceeehh
Confidence            9987542 4443

>PLN02494 adenosylhomocysteinase

Probab=87.65  E-value=0.4  Score=43.01  Aligned_cols=111  Identities=14%  Similarity=0.088  Sum_probs=69.6

Q ss_pred             ccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc---------cCHHHHHHHHhcCCc
Q psy5266          41 ILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL---------LDQEALVEFLRDKKI  105 (180)
Q Consensus        41 ~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~---------vd~~al~~~L~~~~i  105 (180)
                      .+.++-+++..++     .+.++|.+++|.+.+++     ++. |+.++-+.+...         +....+.++++.+|+
T Consensus       238 qS~~d~i~r~t~i-----~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADV  312 (477)
T PLN02494        238 HSLPDGLMRATDV-----MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADI  312 (477)
T ss_pred             ccHHHHHHHhcCC-----ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCE
Confidence            4567888877664     26689999999999996     454 666665544321         111136778888998


Q ss_pred             ceEEeecCCCCCCCCCCCCCCCC------ceeec--ccCHHHHHHH--HHccccccccccCCCCC
Q psy5266         106 GGAGLDVMIPEPLPADHPLVQLD------NCGNG--LLDQEALVEF--LRDKKIGGAGLDVMIPE  160 (180)
Q Consensus       106 ~~~~lDv~~~ep~~~~~~l~~~~------Nv~~g--~~~~~al~~~--L~~g~l~ga~ldV~~~E  160 (180)
                      +..   ............|-.++      |+.+.  .++.++|.++  ++.+.++ ..+|++.-+
T Consensus       313 VI~---tTGt~~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~  373 (477)
T PLN02494        313 FVT---TTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFP  373 (477)
T ss_pred             EEE---CCCCccchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcC
Confidence            432   11111111111222232      66662  8999999998  8888887 889988653

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=86.23  E-value=2.1  Score=32.06  Aligned_cols=40  Identities=20%  Similarity=0.314  Sum_probs=32.9

Q ss_pred             CHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCC
Q psy5266          43 VIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGG   89 (180)
Q Consensus        43 ~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~   89 (180)
                      ++++..++||+|+...+..    ++|..+.   +|+|+++++++...
T Consensus        64 ~l~~~v~~ADIVvsAtg~~----~~i~~~~---ikpGa~Vidvg~~~  103 (140)
T cd05212          64 QLQSKVHDADVVVVGSPKP----EKVPTEW---IKPGATVINCSPTK  103 (140)
T ss_pred             CHHHHHhhCCEEEEecCCC----CccCHHH---cCCCCEEEEcCCCc
Confidence            7999999999999998744    5676554   78999999987665

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=84.91  E-value=2.1  Score=35.76  Aligned_cols=101  Identities=12%  Similarity=0.073  Sum_probs=64.7

Q ss_pred             cCCccccc-----eeeeEEEeccccccCCc----cceeeccCHHHH---hccCCEEEEccCCCCCCcceeCHhHHhccCC
Q psy5266          11 TGTPGQVH-----LIVCVLIRYHVDLTGGS----KQVYLILVIRTR---SAQSDFIFVTCALTKDTEQLIGRKQFSLMKP   78 (180)
Q Consensus        11 ~G~iG~~~-----~~~~~~~~~~~~~~~~~----~~~~~~~~l~~l---~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~   78 (180)
                      .|++|+.+     --|..+..||++.....    .......+++++   +.++|+|++++|-. .+..++ .+....+++
T Consensus         8 lG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~l~~~l~~   85 (298)
T TIGR00872         8 LGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EELAPTLEK   85 (298)
T ss_pred             chHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HHHHhhCCC
Confidence            46666641     01335566776654211    112233455554   45689999999976 777777 355667889


Q ss_pred             CcEEEecCCCCccCHHHHHHHHhcCCcceEEeecC
Q psy5266          79 TAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVM  113 (180)
Q Consensus        79 g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~  113 (180)
                      |.++|+++-+...+...+.+.+++..+..+...|+
T Consensus        86 g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vs  120 (298)
T TIGR00872        86 GDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTS  120 (298)
T ss_pred             CCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCC
Confidence            99999998877667777777777766655555554

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=84.52  E-value=5.7  Score=33.31  Aligned_cols=66  Identities=11%  Similarity=0.149  Sum_probs=41.7

Q ss_pred             ceeeccCHHHHhccCCEEEEccCCCCCC---cc-------eeCHhHHhccCCCcEEEecCCCCccCHHHHHHHHhcCCcc
Q psy5266          37 QVYLILVIRTRSAQSDFIFVTCALTKDT---EQ-------LIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIG  106 (180)
Q Consensus        37 ~~~~~~~l~~l~~~~D~v~~h~pl~~~T---~g-------lIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i~  106 (180)
                      +.....+.++.+++||+|.+-+|.+.+.   ..       -++.+.+++||+++.++ ++   ..+.. +.+.+++..+.
T Consensus        42 g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G---~~~~~-~~~~~~~~gi~  116 (296)
T PRK08306         42 GATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SG---IANPY-LKELAKETNRK  116 (296)
T ss_pred             CceeeccHHHHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCCCEEE-Ee---cCCHH-HHHHHHHCCCe
Confidence            3344557889999999999999975332   11       23678899999997444 22   22222 33555555654


Q ss_pred             e
Q psy5266         107 G  107 (180)
Q Consensus       107 ~  107 (180)
                      .
T Consensus       117 ~  117 (296)
T PRK08306        117 L  117 (296)
T ss_pred             E
Confidence            4

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=84.49  E-value=1.8  Score=38.85  Aligned_cols=106  Identities=15%  Similarity=0.096  Sum_probs=72.0

Q ss_pred             cCCccccc---e--eeeEEEeccccccCCc---c------ceeeccCHHHHh---ccCCEEEEccCCCCCCcceeCHhHH
Q psy5266          11 TGTPGQVH---L--IVCVLIRYHVDLTGGS---K------QVYLILVIRTRS---AQSDFIFVTCALTKDTEQLIGRKQF   73 (180)
Q Consensus        11 ~G~iG~~~---~--~~~~~~~~~~~~~~~~---~------~~~~~~~l~~l~---~~~D~v~~h~pl~~~T~glIg~~~i   73 (180)
                      +|.+|+..   +  -|-.+..|+.+.....   +      ......+++++.   +++|+|.+++|-...+..++ .+.+
T Consensus         7 LG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~Vi-~~l~   85 (467)
T TIGR00873         7 LAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVI-NQLL   85 (467)
T ss_pred             eHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHHH-HHHH
Confidence            46666641   0  1335677776655311   1      123456777776   46899999999777777777 4566


Q ss_pred             hccCCCcEEEecCCCCccCHHHHHHHHhcCCcceEEeecCCCCC
Q psy5266          74 SLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEP  117 (180)
Q Consensus        74 ~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep  117 (180)
                      ..+++|.++|+.+....-+.....+.+++..+.++..+|+-.++
T Consensus        86 ~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~  129 (467)
T TIGR00873        86 PLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEE  129 (467)
T ss_pred             hhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHH
Confidence            67889999999988776677777777887778777777775544

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1

Probab=84.07  E-value=3.7  Score=30.51  Aligned_cols=63  Identities=21%  Similarity=0.281  Sum_probs=45.4

Q ss_pred             cCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccCHHHHHHHHhcCCcceEEeecCC
Q psy5266          42 LVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMI  114 (180)
Q Consensus        42 ~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~  114 (180)
                      .+-++++++||+|.---|..        .+.+++|++|.+++....-.  ....+.+.|.+..+...++|...
T Consensus        56 ~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~li~~~~~~--~~~~~~~~l~~~~it~~a~E~ip  118 (136)
T PF05222_consen   56 SRAEEVYSDADIILKVKPPS--------EEELALLKPGQTLIGFLHPA--QNKELLEALAKKGITAFALELIP  118 (136)
T ss_dssp             SSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEEEE--GG--GHHHHHHHHHHCTEEEEEGGGSB
T ss_pred             cCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEEEEeeccc--cCHHHHHHHHHCCCEEEEhhhCc
Confidence            35669999999998776653        67888999999999776544  46677777888888888887653

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=81.76  E-value=2.5  Score=36.30  Aligned_cols=45  Identities=7%  Similarity=0.014  Sum_probs=38.3

Q ss_pred             ccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCC
Q psy5266          41 ILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRG   88 (180)
Q Consensus        41 ~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg   88 (180)
                      ..++++++..+|+|+.|.   +.+.++.+++.+.+|+.+++++..-..
T Consensus        66 ~g~~eeLl~~vDiVve~T---p~~~~~~na~~~~~~GakaVl~~~p~~  110 (333)
T TIGR01546        66 AGTLEDLLEKVDIVVDAT---PGGIGAKNKPLYEKAGVKAIFQGGEKA  110 (333)
T ss_pred             cCCHHHHhhcCCEEEECC---CCCCChhhHHHHHhCCcCEEEECCCCC
Confidence            447999999999999885   588999999999999999999876443

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=80.21  E-value=26  Score=30.54  Aligned_cols=63  Identities=11%  Similarity=0.017  Sum_probs=38.7

Q ss_pred             eccCHHHHhccCCEEEEccCCCCCCcceeCH--------hHHhccCCCcEEEecCCCCccCHHHHH-HHHhc
Q psy5266          40 LILVIRTRSAQSDFIFVTCALTKDTEQLIGR--------KQFSLMKPTAILINTSRGGLLDQEALV-EFLRD  102 (180)
Q Consensus        40 ~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~--------~~i~~mk~g~~lvn~~Rg~~vd~~al~-~~L~~  102 (180)
                      ...++++.+++||+|++++|-.....+-.+.        +....+++|.++++.+--..-....+. .++++
T Consensus        66 ~~~~~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~  137 (411)
T TIGR03026        66 ATTDYEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILER  137 (411)
T ss_pred             EECCHHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHh
Confidence            4457888899999999999965432222222        233457889999987632222334453 44444

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	180
2gcg_A	330	Ternary Crystal Structure Of Human Glyoxylate Reduc		3e-19
2h1s_A	328	Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE RE		2e-18
1wwk_A	307	Crystal Structure Of Phosphoglycerate Dehydrogenase		2e-17
2cuk_A	311	Crystal Structure Of Tt0316 Protein From Thermus Th		1e-14
2dbr_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		2e-13
2dbq_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		9e-13
3hg7_A	324	Crystal Structure Of D-Isomer Specific 2-Hydroxyaci		3e-11
3fn4_A	401	Apo-form Of Nad-dependent Formate Dehydrogenase Fro		4e-11
2gsd_A	402	Nad-dependent Formate Dehydrogenase From Bacterium		4e-11
2nac_A	393	High Resolution Structures Of Holo And Apo Formate		4e-10
2go1_A	401	Nad-Dependent Formate Dehydrogenase From Pseudomona		5e-10
2gug_A	401	Nad-dependent Formate Dehydrogenase From Pseudomona		5e-10
2p9c_A	410	Crystal Structure Of Serine Bound G336v Mutant Of E		6e-10
2p9g_A	410	Crystal Structure Of Serine Bound G336v,G337v Doubl		6e-10
3gg9_A	352	Crystal Structure Of Putative D-3-Phosphoglycerate		1e-09
1psd_A	409	The Allosteric Ligand Site In The Vmax-Type Coopera		2e-09
3evt_A	324	Crystal Structure Of Phosphoglycerate Dehydrogenase		2e-09
3evt_A	324	Crystal Structure Of Phosphoglycerate Dehydrogenase		2e-04
3ba1_A	333	Structure Of Hydroxyphenylpyruvate Reductase From C		2e-09
2j6i_A	364	Candida Boidinii Formate Dehydrogenase (Fdh) C-Term		2e-09
2fss_A	365	Candida Boidinii Formate Dehydrogenase (Fdh) K47e M		2e-09
3ddn_A	528	Crystal Structure Of Hydroxypyruvic Acid Phosphate		4e-09
1ygy_A	529	Crystal Structure Of D-3-Phosphoglycerate Dehydroge		4e-09
2yq4_A	343	Crystal Structure Of D-isomer Specific 2-hydroxyaci		5e-09
1hl3_A	358	CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK		9e-09
3ga0_A	358	Ctbp1BARS GLY172->glu Mutant Structure: Impairing N		9e-09
1hku_A	358	CtbpBARS: A DUAL-Function Protein Involved In Trans		9e-09
2ome_A	336	Crystal Structure Of Human Ctbp2 Dehydrogenase Comp		9e-09
1mx3_A	347	Crystal Structure Of Ctbp Dehydrogenase Core Holo F		1e-08
1sc6_A	404	Crystal Structure Of W139g D-3-Phosphoglycerate Deh		2e-08
3naq_A	357	Apo-Form Of Nad-Dependent Formate Dehydrogenase Fro		3e-08
3n7u_A	351	Nad-Dependent Formate Dehydrogenase From Higher-Pla		3e-08
4dgs_A	340	The Crystals Structure Of Dehydrogenase From Rhizob		3e-08
1yba_A	410	The Active Form Of Phosphoglycerate Dehydrogenase L		4e-08
4hy3_A	365	Crystal Structure Of A Phosphoglycerate Oxidoreduct		1e-07
2w2k_A	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		4e-07
2w2l_D	348	Crystal Structure Of The Holo Forms Of Rhodotorula		4e-07
2w2k_B	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		4e-07
4ebf_A	334	Semet Thermostable Phosphite Dehydrogenase Glu175-A		7e-07
4e5m_A	329	Thermostable Phosphite Dehydrogenase E175aA176R IN		8e-07
4e5k_A	329	Thermostable Phosphite Dehydrogenase In Complex Wit		8e-07
4e5p_A	332	Thermostable Phosphite Dehydrogenase A176r Variant		9e-07
4e5n_A	330	Thermostable Phosphite Dehydrogenase In Complex Wit		9e-07
2g76_A	335	Crystal Structure Of Human 3-Phosphoglycerate Dehyd		1e-06
1dxy_A	333	Structure Of D-2-Hydroxyisocaproate Dehydrogenase L		1e-06
2ekl_A	313	Structure Of St1218 Protein From Sulfolobus Tokodai		2e-06
1xdw_A	331	Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase		4e-06
3k5p_A	416	Crystal Structure Of Amino Acid-Binding Act: D-Isom		4e-06
3kb6_A	334	Crystal Structure Of D-lactate Dehydrogenase From A		6e-06
2d0i_A	333	Crystal Structure Ph0520 Protein From Pyrococcus Ho		4e-05
4g2n_A	345	Crystal Structure Of Putative D-Isomer Specific 2-H		5e-05
1gdh_A	320	Crystal Structure Of A Nad-Dependent D-Glycerate De		4e-04

>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate ReductaseHYDROXYPYRUVATE REDUCTASE Length = 330

Iteration: 1
 Score = 90.9 bits (224), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/83 (53%), Positives = 55/83 (66%)
Query: 48  SAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGG 107
           +AQSDFI V C+LT  TE L  +  F  MK TA+ IN SRG +++Q+ L + L   KI  
Sbjct: 208 AAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAA 267
Query: 108 AGLDVMIPEPLPADHPLVQLDNC 130
           AGLDV  PEPLP +HPL+ L NC
Sbjct: 268 AGLDVTSPEPLPTNHPLLTLKNC 290

>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO Sapiens Length = 328

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/83 (51%), Positives = 54/83 (65%)
Query: 48  SAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGG 107
           +AQSDFI V C+LT  TE L  +  F   K TA+ IN SRG +++Q+ L + L   KI  
Sbjct: 206 AAQSDFIVVACSLTPATEGLCNKDFFQKXKETAVFINISRGDVVNQDDLYQALASGKIAA 265
Query: 108 AGLDVMIPEPLPADHPLVQLDNC 130
           AGLDV  PEPLP +HPL+ L NC
Sbjct: 266 AGLDVTSPEPLPTNHPLLTLKNC 288

>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/81 (50%), Positives = 53/81 (65%)
Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
           +SD + +   L + T  LI  ++  LMK TAILINTSRG ++D  ALV+ L++  I GAG
Sbjct: 196 ESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAG 255
Query: 110 LDVMIPEPLPADHPLVQLDNC 130
           LDV   EPLP DHPL + DN 
Sbjct: 256 LDVFEEEPLPKDHPLTKFDNV 276

>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus Thermophilus Hb8 Length = 311

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 39  YLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVE 98
           Y  L +     ++D + +   LT +T +L+ R++   MK  AIL+NT+RG L+D EALVE
Sbjct: 182 YPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVE 241
Query: 99  FLRDKKIGGAGLDVMIPEPLPADHPLVQLDNC 130
            LR   + GAGLDV  PEPLP  HPL  L N 
Sbjct: 242 ALRG-HLFGAGLDVTDPEPLPPGHPLYALPNA 272

>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1) Length = 334

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
           +SDF+ +   LT++T  LI  ++  LMK TAILIN +RG ++D  ALV+ L++  I GAG
Sbjct: 204 ESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAG 263
Query: 110 LDVMIPEPLPADHPLVQLDNC 130
           LDV   EP   +  L +LDN 
Sbjct: 264 LDVFEEEPY-YNEELFKLDNV 283

>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41) Length = 334

Iteration: 1
 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
           +SDF+ +   LT++T  LI  ++  L K TAILIN +RG ++D  ALV+ L++  I GAG
Sbjct: 204 ESDFVVLAVPLTRETYHLINEERLKLXKKTAILINIARGKVVDTNALVKALKEGWIAGAG 263
Query: 110 LDVMIPEPLPADHPLVQLDNC 130
           LDV   EP   +  L +LDN 
Sbjct: 264 LDVFEEEPY-YNEELFKLDNV 283

>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid Dehydrogenase Family Protein From Aeromonas Salmonicida Subsp. Salmonicida A449 Length = 324

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 48/92 (52%)
Query: 33  GGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLD 92
            G  QVY +  +    AQ+D I      T++T  L    +F   KP AIL N  RG  ++
Sbjct: 177 AGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAIN 236
Query: 93  QEALVEFLRDKKIGGAGLDVMIPEPLPADHPL 124
           +  L+  LR  K+G A LDV   EPLPAD PL
Sbjct: 237 EGDLLTALRTGKLGMAVLDVFEQEPLPADSPL 268

>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c-1 In Closed Conformation Length = 401

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 52  DFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLD 111
           D + + C L  +TE +I  +   L K  A L+NT+RG L D++A+V  L   ++ G   D
Sbjct: 249 DVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTARGKLCDRDAIVRALESGRLAGYAGD 308
Query: 112 VMIPEPLPADHPLVQLDNCG 131
           V  P+P P DHP   + + G
Sbjct: 309 VWFPQPAPNDHPWRTMPHNG 328

>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c2 In Complex With Nad And Azide Length = 402

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 52  DFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLD 111
           D + + C L  +TE +I  +   L K  A L+NT+RG L D++A+V  L   ++ G   D
Sbjct: 250 DVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTARGKLCDRDAIVRALESGRLAGYAGD 309
Query: 112 VMIPEPLPADHPLVQLDNCG 131
           V  P+P P DHP   + + G
Sbjct: 310 VWFPQPAPNDHPWRTMPHNG 329

>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate Dehydrogenase Length = 393

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 52  DFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLD 111
           D + + C L  +TE +I  +   L K  A ++NT+RG L D++A+   L   ++ G   D
Sbjct: 249 DVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGD 308
Query: 112 VMIPEPLPADHPL 124
           V  P+P P DHP 
Sbjct: 309 VWFPQPAPKDHPW 321

>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101 Length = 401

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 52  DFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLD 111
           D + + C L  +TE +I  +   L K  A ++NT+RG L D++A+   L   ++ G   D
Sbjct: 250 DVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGD 309
Query: 112 VMIPEPLPADHPL 124
           V  P+P P DHP 
Sbjct: 310 VWFPQPAPKDHPW 322

>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101 In Complex With Formate Length = 401

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 52  DFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLD 111
           D + + C L  +TE +I  +   L K  A ++NT+RG L D++A+   L   ++ G   D
Sbjct: 250 DVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGD 309
Query: 112 VMIPEPLPADHPL 124
           V  P+P P DHP 
Sbjct: 310 VWFPQPAPKDHPW 322

>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 51  SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGL 110
           SD + +       T+ ++G K+ SLMKP ++LIN SRG ++D  AL + L  K + GA +
Sbjct: 204 SDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAI 263
Query: 111 DVMIPEPL----PADHPLVQLDNC 130
           DV   EP     P   PL + DN 
Sbjct: 264 DVFPTEPATNSDPFTSPLAEFDNV 287

>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 51  SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGL 110
           SD + +       T+ ++G K+ SLMKP ++LIN SRG ++D  AL + L  K + GA +
Sbjct: 204 SDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAI 263
Query: 111 DVMIPEPL----PADHPLVQLDNC 130
           DV   EP     P   PL + DN 
Sbjct: 264 DVFPTEPATNSDPFTSPLAEFDNV 287

>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate Dehydrogenase Oxidoreductase From Ralstonia Solanacearum Length = 352

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
           QSD + V   L  +T  +I     + MKPTA+ +NTSR  L+++  +V  L   + G A 
Sbjct: 215 QSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAA 274
Query: 110 LDVMIPEPLPADHPLVQLDNC 130
           +DV   EP+   H L++++NC
Sbjct: 275 IDVFETEPILQGHTLLRMENC 295

>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative Enzyme Phosphoglycerate Dehydrogenase Length = 409

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 51  SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGL 110
           SD + +       T+ ++G K+ SLMKP ++LIN SRG ++D  AL + L  K + GA +
Sbjct: 203 SDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLAGAAI 262
Query: 111 DVMIPEPL----PADHPLVQLDN 129
           DV   EP     P   PL + DN
Sbjct: 263 DVFPTEPATNSDPFTSPLCEFDN 285

>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Lactobacillus Plantarum Length = 324

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 40/79 (50%)
Query: 52  DFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLD 111
           +FI     LT  T  L   + F   K   +LIN  RG  +D  AL+  L   ++  A LD
Sbjct: 193 NFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALD 252
Query: 112 VMIPEPLPADHPLVQLDNC 130
           V  PEPLP DHPL Q D+ 
Sbjct: 253 VTEPEPLPTDHPLWQRDDV 271

>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Lactobacillus Plantarum Length = 324

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 127 LDNCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEI 176
           L N G G  +D  AL+  L   ++  A LDV  PEP+P DHPL Q D+  I
Sbjct: 223 LINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLI 273

>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 48  SAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGG 107
           ++ SD + V C LT +T  +I R+    + P  +LIN  RG  +D+  LV  L + ++GG
Sbjct: 213 ASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGG 272
Query: 108 AGLDVM-----IPEPLPADHPLVQLDNCGNGLLD 136
           AGLDV      +PE L     +V L + G+G ++
Sbjct: 273 AGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVE 306

>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal Mutant Length = 364

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           AQ+D + V   L   T+ LI ++  S  K  A L+NT+RG +   E +   L   ++ G 
Sbjct: 220 AQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGY 279
Query: 109 GLDVMIPEPLPADHPLVQLDN---CGNGL 134
           G DV  P+P P DHP   + N    GN +
Sbjct: 280 GGDVWFPQPAPKDHPWRDMRNKYGAGNAM 308

>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant Length = 365

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           AQ+D + V   L   T+ LI ++  S  K  A L+NT+RG +   E +   L   ++ G 
Sbjct: 221 AQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGY 280
Query: 109 GLDVMIPEPLPADHPLVQLDN---CGNGL 134
           G DV  P+P P DHP   + N    GN +
Sbjct: 281 GGDVWFPQPAPKDHPWRDMRNKYGAGNAM 309

>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           A++DFI V    T +T  LI ++  +  KP  I++N +RGGL+D+ AL + +    +  A
Sbjct: 194 ARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAA 253
Query: 109 GLDVMIPEPLPADHPLVQL 127
           GLDV   EP   D PL +L
Sbjct: 254 GLDVFATEPC-TDSPLFEL 271

>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           A++DFI V    T +T  LI ++  +  KP  I++N +RGGL+D+ AL + +    +  A
Sbjct: 195 ARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAA 254
Query: 109 GLDVMIPEPLPADHPLVQL 127
           GLDV   EP   D PL +L
Sbjct: 255 GLDVFATEPC-TDSPLFEL 272

>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid Dehydrogenase From Lactobacillus Delbrueckii Ssp. Bulgaricus Length = 343

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 42/67 (62%)
Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
           ++D + +   L   TE +IG KQ   MK +A LIN +RG L+D  AL++ L+D +I GAG
Sbjct: 200 EADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAG 259
Query: 110 LDVMIPE 116
           LD +  E
Sbjct: 260 LDTLAGE 266

>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
            SD + + C L +    LI       M+  A L+NT+RGGL+D++AL + L++ +I GA 
Sbjct: 226 HSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAA 285
Query: 110 LDVMIPEPL 118
           LDV   EP 
Sbjct: 286 LDVHESEPF 294

>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
            SD + + C L +    LI       M+  A L+NT+RGGL+D++AL + L++ +I GA 
Sbjct: 226 HSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAA 285
Query: 110 LDVMIPEPL 118
           LDV   EP 
Sbjct: 286 LDVHESEPF 294

>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
            SD + + C L +    LI       M+  A L+NT+RGGL+D++AL + L++ +I GA 
Sbjct: 226 HSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAA 285
Query: 110 LDVMIPEPL 118
           LDV   EP 
Sbjct: 286 LDVHESEPF 294

>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
           QSD + + C L +    LI       M+  A L+N +RGGL+D++AL + L++ +I GA 
Sbjct: 207 QSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAA 266
Query: 110 LDVMIPEPLP-ADHPL 124
           LDV   EP   A  PL
Sbjct: 267 LDVHESEPFSFAQGPL 282

>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
            SD + + C L +    LI       M+  A L+NT+RGGL+D++AL + L++ +I GA 
Sbjct: 223 HSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAA 282
Query: 110 LDVMIPEPLP 119
           LDV   EP  
Sbjct: 283 LDVHESEPFS 292

>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate Dehydrogenase Complexed With Nad+ Length = 404

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 51  SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGL 110
           SD + +       T+   G K+ SL KP ++LIN SRG ++D  AL + L  K + GA +
Sbjct: 198 SDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPALADALASKHLAGAAI 257
Query: 111 DVMIPEPL----PADHPLVQLDNC 130
           DV   EP     P   PL + DN 
Sbjct: 258 DVFPTEPATNSDPFTSPLAEFDNV 281

>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabidopsis Thaliana Length = 357

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 44/80 (55%)
Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
           + D I +   LT+ T  +  ++    +K   +++N +RG +++++A+V+ +    IGG  
Sbjct: 226 KCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYS 285
Query: 110 LDVMIPEPLPADHPLVQLDN 129
            DV  P+P P DHP   + N
Sbjct: 286 GDVWDPQPAPKDHPWRYMPN 305

>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid Thaliana In Complex With Nad And Azide Length = 351

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 44/80 (55%)
Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
           + D I +   LT+ T  +  ++    +K   +++N +RG +++++A+V+ +    IGG  
Sbjct: 220 KCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYS 279
Query: 110 LDVMIPEPLPADHPLVQLDN 129
            DV  P+P P DHP   + N
Sbjct: 280 GDVWDPQPAPKDHPWRYMPN 299

>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 51  SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGL 110
           SD + V  A +  T+ ++       + P  I++N +RG ++D++AL+E L+   I GAGL
Sbjct: 223 SDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGL 282
Query: 111 DVMIPEP 117
           DV + EP
Sbjct: 283 DVFVNEP 289

>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 51  SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGL 110
           SD + +       T+   G K+ SL KP ++LIN SRG ++D  AL + L  K + GA +
Sbjct: 204 SDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPALCDALASKHLAGAAI 263
Query: 111 DVMIPEPL----PADHPLVQLDN 129
           DV   EP     P   PL + DN
Sbjct: 264 DVFPTEPATNSDPFTSPLCEFDN 286

>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase From Rhizobium Etli Length = 365

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
           +SDFIFV  A+T + ++ +G + FS  +  A  I  SR  ++D +AL   +    I  A 
Sbjct: 230 KSDFIFVVAAVTSENKRFLGAEAFSSXRRGAAFILLSRADVVDFDALXAAVSSGHIVAAS 289
Query: 110 LDVMIPEPLPADHPLVQL 127
            DV   EPLP DHP+  L
Sbjct: 290 -DVYPEEPLPLDHPVRSL 306

>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a. Length = 348

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
           +SD + V+    K T  LI    F+ MKP + ++NT+RG ++ Q+AL+  L+  K+  AG
Sbjct: 220 RSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAG 279
Query: 110 LDVMIPEP 117
           LDV   EP
Sbjct: 280 LDVHEFEP 287

>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 2.5a Length = 348

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
           +SD + V+    K T  LI    F+ MKP + ++NT+RG ++ Q+AL+  L+  K+  AG
Sbjct: 220 RSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAG 279
Query: 110 LDVMIPEP 117
           LDV   EP
Sbjct: 280 LDVHEFEP 287

>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a Length = 348

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
           +SD + V+    K T  LI    F+ MKP + ++NT+RG ++ Q+AL+  L+  K+  AG
Sbjct: 220 RSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAG 279
Query: 110 LDVMIPEP 117
           LDV   EP
Sbjct: 280 LDVHEFEP 287

>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant Length = 334

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           A SDFI +   L  DT  L+  +  +L++P A+L+N  RG ++D+ A++  L   ++GG 
Sbjct: 200 ASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGY 259
Query: 109 GLDVMIPEPLP-ADHP 123
             DV   E    AD P
Sbjct: 260 AADVFEXEDWARADRP 275

>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX WITH NADP Length = 329

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           A SDFI +   L  DT  L+  +  +L++P A+L+N  RG ++D+ A++  L   ++GG 
Sbjct: 199 ASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGY 258
Query: 109 GLDVMIPEPLP-ADHP 123
             DV   E    AD P
Sbjct: 259 AADVFEMEDWARADRP 274

>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad And Sulfite Length = 329

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           A SDFI +   L  DT  L+  +  +L++P A+L+N  RG ++D+ A++  L   ++GG 
Sbjct: 199 ASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGY 258
Query: 109 GLDVMIPEPLP-ADHP 123
             DV   E    AD P
Sbjct: 259 AADVFEMEDWARADRP 274

>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In Complex With Nad Length = 332

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           A SDFI +   L  DT  L+  +  +L++P A+L+N  RG ++D+ A++  L   ++GG 
Sbjct: 199 ASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGY 258
Query: 109 GLDVMIPEPLP-ADHP 123
             DV   E    AD P
Sbjct: 259 AADVFEMEDWARADRP 274

>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad Length = 330

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           A SDFI +   L  DT  L+  +  +L++P A+L+N  RG ++D+ A++  L   ++GG 
Sbjct: 199 ASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGY 258
Query: 109 GLDVMIPEPLP-ADHP 123
             DV   E    AD P
Sbjct: 259 AADVFEMEDWARADRP 274

>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase Length = 335

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 52  DFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLD 111
           DFI V   L   T  L+    F+  K    ++N +RGG++D+ AL+  L+  +  GA LD
Sbjct: 221 DFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALD 280
Query: 112 VMIPEPLPADHPLVQLDN 129
           V   EP P D  LV  +N
Sbjct: 281 VFTEEP-PRDRALVDHEN 297

>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase Length = 333

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
           QSD I +     +    +I    F+LMKP AI+INT+R  L+D +A++  L+  K+ G G
Sbjct: 197 QSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVG 256
Query: 110 LD 111
           +D
Sbjct: 257 ID 258

>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii Length = 313

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
            SD I +   ++KD + +I   QF LMK   I++NTSR   ++ +AL+++++  K+    
Sbjct: 196 NSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYA 255
Query: 110 LDVMIPEP 117
            DV   EP
Sbjct: 256 TDVFWNEP 263

>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From Acidaminococcus Fermentans Length = 331

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
           +SD I +     K+   ++ R     MK  AIL+N +RG L+D EA++E +   K+GG G
Sbjct: 198 KSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYG 257
Query: 110 LDVM 113
            DV+
Sbjct: 258 CDVL 261

>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain From Brucella Melitensis Length = 416

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 51  SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGL 110
           SD + +    +K T +LI   +   MK  A LIN +RG  +D EAL + L++  + GA +
Sbjct: 209 SDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAI 268
Query: 111 DVMIPEPLPADH----PLVQLDNC 130
           DV   EP         PL  L+N 
Sbjct: 269 DVFPVEPASNGERFSTPLQGLENV 292

>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%)
Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
           +SD I +    TK+T   I  ++ SL K    LINT+RG ++D +AL    +  K  G G
Sbjct: 194 ESDVISLHVPYTKETHHXINEERISLXKDGVYLINTARGKVVDTDALYRAYQRGKFSGLG 253
Query: 110 LDVMIPEPL 118
           LDV   E +
Sbjct: 254 LDVFEDEEI 262

>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 50  QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAG 109
           +SD + +   LT+DT  +I  ++   ++    L+N  RG L+D++A+ E ++  K+ G  
Sbjct: 200 KSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYA 258
Query: 110 LDVMIPEPLPADHPLVQLD 128
            DV   EP+  +H L + +
Sbjct: 259 TDVFEKEPV-REHELFKYE 276

>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. Js6 66 Length = 345

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 51  SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGL 110
           SD   +      + +  +   + + +   A++IN SRG L++ +AL+E LR K +  AGL
Sbjct: 228 SDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGL 287
Query: 111 DVMIPEP 117
           DV   EP
Sbjct: 288 DVFANEP 294

>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 32/67 (47%)
Query: 51  SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGL 110
           S F  +    T +T     +     +   AI++NT+RG L+D E +V  L   ++  AG 
Sbjct: 203 SQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGF 262
Query: 111 DVMIPEP 117
           DV   EP
Sbjct: 263 DVFAGEP 269

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	180
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	5e-41
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	2e-38
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	5e-38
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	7e-38
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	2e-37
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	5e-37
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	3e-36
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	7e-36
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	4e-35
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	5e-35
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	5e-33
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	7e-33
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	8e-33
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	9e-33
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	1e-32
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	4e-32
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	5e-31
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	5e-31
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	5e-30
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	1e-29
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	2e-29
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	1e-28
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	3e-28
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	8e-28
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	2e-27
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	2e-26
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	3e-26
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	7e-26
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	7e-26
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	2e-25
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	9e-23
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	6e-21
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	6e-04

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330

 Score =  139 bits (353), Expect = 5e-41
 Identities = 44/82 (53%), Positives = 54/82 (65%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           AQSDFI V C+LT  TE L  +  F  MK TA+ IN SRG +++Q+ L + L   KI  A
Sbjct: 209 AQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAA 268

Query: 109 GLDVMIPEPLPADHPLVQLDNC 130
           GLDV  PEPLP +HPL+ L NC
Sbjct: 269 GLDVTSPEPLPTNHPLLTLKNC 290

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311

 Score =  132 bits (334), Expect = 2e-38
 Identities = 40/82 (48%), Positives = 53/82 (64%), Gaps = 1/82 (1%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
            ++D + +   LT +T +L+ R++   MK  AIL+NT+RG L+D EALVE LR   + GA
Sbjct: 192 KEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALR-GHLFGA 250

Query: 109 GLDVMIPEPLPADHPLVQLDNC 130
           GLDV  PEPLP  HPL  L N 
Sbjct: 251 GLDVTDPEPLPPGHPLYALPNA 272

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303

 Score =  131 bits (331), Expect = 5e-38
 Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 1/83 (1%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
            ++        L K T  L+  +  +LM   A+ +N  R  +LD++ ++  L+++     
Sbjct: 173 REARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIF 232

Query: 109 GLDVMI-PEPLPADHPLVQLDNC 130
             DV         D     L N 
Sbjct: 233 ASDVWWGRNDFAKDAEFFSLPNV 255

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334

 Score =  131 bits (333), Expect = 7e-38
 Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 1/82 (1%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
            +SDF+ +   LT++T  LI  ++  LMK TAILIN +RG ++D  ALV+ L++  I GA
Sbjct: 203 RESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGA 262

Query: 109 GLDVMIPEPLPADHPLVQLDNC 130
           GLDV   EP   +  L +LDN 
Sbjct: 263 GLDVFEEEPYY-NEELFKLDNV 283

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320

 Score =  129 bits (328), Expect = 2e-37
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 1/82 (1%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           + S F  +    T +T     +     +   AI++NT+RG L+D E +V  L   ++  A
Sbjct: 201 SVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYA 260

Query: 109 GLDVMIPEPLPADHPLVQLDNC 130
           G DV   EP   +     L N 
Sbjct: 261 GFDVFAGEP-NINEGYYDLPNT 281

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score =  129 bits (326), Expect = 5e-37
 Identities = 33/82 (40%), Positives = 42/82 (51%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           A ++FI     LT  T  L   + F   K   +LIN  RG  +D  AL+  L   ++  A
Sbjct: 190 ATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMA 249

Query: 109 GLDVMIPEPLPADHPLVQLDNC 130
            LDV  PEPLP DHPL Q D+ 
Sbjct: 250 ALDVTEPEPLPTDHPLWQRDDV 271

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352

 Score =  127 bits (322), Expect = 3e-36
 Identities = 29/82 (35%), Positives = 46/82 (56%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
            QSD + V   L  +T  +I     + MKPTA+ +NTSR  L+++  +V  L   + G A
Sbjct: 214 EQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMA 273

Query: 109 GLDVMIPEPLPADHPLVQLDNC 130
            +DV   EP+   H L++++NC
Sbjct: 274 AIDVFETEPILQGHTLLRMENC 295

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345

 Score =  126 bits (319), Expect = 7e-36
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
             SD   +      + +  +   + + +   A++IN SRG L++ +AL+E LR K +  A
Sbjct: 226 GASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAA 285

Query: 109 GLDVMIPEPLPADHPLVQLDNC 130
           GLDV   EP   D     LDN 
Sbjct: 286 GLDVFANEP-AIDPRYRSLDNI 306

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330

 Score =  124 bits (313), Expect = 4e-35
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           A SDFI +   L  DT  L+  +  +L++P A+L+N  RG ++D+ A++  L   ++GG 
Sbjct: 199 ASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGY 258

Query: 109 GLDVMIPE-------PLPADHPLVQLDNC 130
             DV   E       P   D  L+   N 
Sbjct: 259 AADVFEMEDWARADRPQQIDPALLAHPNT 287

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393

 Score =  125 bits (316), Expect = 5e-35
 Identities = 26/81 (32%), Positives = 41/81 (50%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
              D + + C L  +TE +I  +   L K  A ++NT+RG L D++A+   L   ++ G 
Sbjct: 246 PVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGY 305

Query: 109 GLDVMIPEPLPADHPLVQLDN 129
             DV  P+P P DHP   +  
Sbjct: 306 AGDVWFPQPAPKDHPWRTMPY 326

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307

 Score =  118 bits (298), Expect = 5e-33
 Identities = 41/81 (50%), Positives = 53/81 (65%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
            +SD + +   L + T  LI  ++  LMK TAILINTSRG ++D  ALV+ L++  I GA
Sbjct: 195 KESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGA 254

Query: 109 GLDVMIPEPLPADHPLVQLDN 129
           GLDV   EPLP DHPL + DN
Sbjct: 255 GLDVFEEEPLPKDHPLTKFDN 275

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351

 Score =  118 bits (299), Expect = 7e-33
 Identities = 23/81 (28%), Positives = 44/81 (54%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
            + D I +   LT+ T  +  ++    +K   +++N +RG +++++A+V+ +    IGG 
Sbjct: 219 PKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGY 278

Query: 109 GLDVMIPEPLPADHPLVQLDN 129
             DV  P+P P DHP   + N
Sbjct: 279 SGDVWDPQPAPKDHPWRYMPN 299

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290

 Score =  117 bits (296), Expect = 8e-33
 Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
            QSDF+ +   LT  T  ++  +  +  +    ++N +R  ++ +  ++ FL+++     
Sbjct: 172 RQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWY 231

Query: 109 GLDVMIPEPLPADHPLVQLDNC 130
             DV   EP   +     L N 
Sbjct: 232 LSDVWWNEPEITETN---LRNA 250

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347

 Score =  118 bits (298), Expect = 9e-33
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
             SD + + C L +    LI       M+  A L+NT+RGGL+D++AL + L++ +I GA
Sbjct: 222 FHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGA 281

Query: 109 GLDVMIPEPLP-ADHPLVQLDNC 130
            LDV   EP   +  PL    N 
Sbjct: 282 ALDVHESEPFSFSQGPLKDAPNL 304

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364

 Score =  118 bits (299), Expect = 1e-32
 Identities = 29/81 (35%), Positives = 42/81 (51%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           AQ+D + V   L   T+ LI ++  S  K  A L+NT+RG +   E +   L   ++ G 
Sbjct: 220 AQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGY 279

Query: 109 GLDVMIPEPLPADHPLVQLDN 129
           G DV  P+P P DHP   + N
Sbjct: 280 GGDVWFPQPAPKDHPWRDMRN 300

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348

 Score =  116 bits (294), Expect = 4e-32
 Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
            +SD + V+    K T  LI    F+ MKP + ++NT+RG ++ Q+AL+  L+  K+  A
Sbjct: 219 RRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSA 278

Query: 109 GLDVMIPEPLPADHPLVQLDNC 130
           GLDV   EP      L+++ + 
Sbjct: 279 GLDVHEFEP-QVSKELIEMKHV 299

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333

 Score =  113 bits (285), Expect = 5e-31
 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
            +SD + +   LT+DT  +I  ++   ++    L+N  RG L+D++A+ E ++  K+ G 
Sbjct: 199 EKSDIVILALPLTRDTYHIINEERVKKLE-GKYLVNIGRGALVDEKAVTEAIKQGKLKGY 257

Query: 109 GLDVMIPEPLPADHPLVQLDN 129
             DV   EP+           
Sbjct: 258 ATDVFEKEPVREHELFKYEWE 278

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333

 Score =  113 bits (285), Expect = 5e-31
 Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           + SD + V C LT +T  +I R+    + P  +LIN  RG  +D+  LV  L + ++GGA
Sbjct: 214 SNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGA 273

Query: 109 GLDVMIPEPLPADHPLVQLDNC 130
           GLDV   EP      L  L+N 
Sbjct: 274 GLDVFEREPEV-PEKLFGLENV 294

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340

 Score =  111 bits (279), Expect = 5e-30
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
             SD + V  A +  T+ ++       + P  I++N +RG ++D++AL+E L+   I GA
Sbjct: 221 RDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGA 280

Query: 109 GLDVMIPEPLPADHPLVQLDNC 130
           GLDV + EP           N 
Sbjct: 281 GLDVFVNEPAI-RSEFHTTPNT 301

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335

 Score =  110 bits (277), Expect = 1e-29
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
              DFI V   L   T  L+    F+  K    ++N +RGG++D+ AL+  L+  +  GA
Sbjct: 218 PLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGA 277

Query: 109 GLDVMIPEPLPADHPLVQLDN 129
            LDV   EP P D  LV  +N
Sbjct: 278 ALDVFTEEP-PRDRALVDHEN 297

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324

 Score =  109 bits (274), Expect = 2e-29
 Identities = 34/82 (41%), Positives = 43/82 (52%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           AQ+D I      T++T  L    +F   KP AIL N  RG  +++  L+  LR  K+G A
Sbjct: 193 AQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMA 252

Query: 109 GLDVMIPEPLPADHPLVQLDNC 130
            LDV   EPLPAD PL    N 
Sbjct: 253 VLDVFEQEPLPADSPLWGQPNL 274

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315

 Score =  107 bits (268), Expect = 1e-28
 Identities = 22/81 (27%), Positives = 36/81 (44%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
            Q+  +      T  T  +I  +    +   A ++N +RG  + +  L+  L   K+ GA
Sbjct: 192 NQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGA 251

Query: 109 GLDVMIPEPLPADHPLVQLDN 129
            LDV   EPLP + PL +   
Sbjct: 252 MLDVFSQEPLPQESPLWRHPR 272

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313

 Score =  106 bits (266), Expect = 3e-28
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
             SD I +   ++KD + +I   QF LMK   I++NTSR   ++ +AL+++++  K+   
Sbjct: 195 KNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAY 254

Query: 109 GLDVMIPEPLPADH--PLVQLDN 129
             DV   EP   +    L++ + 
Sbjct: 255 ATDVFWNEPPKEEWELELLKHER 277

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333

 Score =  104 bits (261), Expect = 2e-27
 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 13/94 (13%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
            Q+D I +          +I  +  + MK   +++N SRG L+D +A++  L   KI G 
Sbjct: 198 KQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGY 257

Query: 109 GLDVMIPE-------------PLPADHPLVQLDN 129
            +DV   E             P      L+   N
Sbjct: 258 AMDVYEGEVGIFNEDWEGKEFPDARLADLIARPN 291

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333

 Score =  101 bits (254), Expect = 2e-26
 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 13/94 (13%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
            QSD I +     +    +I    F+LMKP AI+INT+R  L+D +A++  L+  K+ G 
Sbjct: 196 KQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGV 255

Query: 109 GLDVMIPEPL-------------PADHPLVQLDN 129
           G+D    E               P    L+ + N
Sbjct: 256 GIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPN 289

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529

 Score =  102 bits (257), Expect = 3e-26
 Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           A++DFI V    T +T  LI ++  +  KP  I++N +RGGL+D+ AL + +    +  A
Sbjct: 195 ARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAA 254

Query: 109 GLDVMIPEPLPADHPLVQLDN 129
           GLDV   EP   D PL +L  
Sbjct: 255 GLDVFATEP-CTDSPLFELAQ 274

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331

 Score =  100 bits (250), Expect = 7e-26
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
            +SD I +     K+   ++ R     MK  AIL+N +RG L+D EA++E +   K+GG 
Sbjct: 197 EKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGY 256

Query: 109 GLDVMIPEP--LPADHPLVQLDN 129
           G DV+  E      D    +L+N
Sbjct: 257 GCDVLDGEASVFGKDLEGQKLEN 279

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416

 Score =  101 bits (253), Expect = 7e-26
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 4/85 (4%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
             SD + +    +K T +LI   +   MK  A LIN +RG  +D EAL + L++  + GA
Sbjct: 207 KTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGA 266

Query: 109 GLDVMIPEPL----PADHPLVQLDN 129
            +DV   EP         PL  L+N
Sbjct: 267 AIDVFPVEPASNGERFSTPLQGLEN 291

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404

 Score =   99 bits (250), Expect = 2e-25
 Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 4/85 (4%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
             SD + +       T+ ++G K+ SLMKP ++LIN SRG ++D  AL + L  K + GA
Sbjct: 196 NMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGA 255

Query: 109 GLDVMIPEPL----PADHPLVQLDN 129
            +DV   EP     P   PL + DN
Sbjct: 256 AIDVFPTEPATNSDPFTSPLAEFDN 280

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381

 Score = 92.3 bits (230), Expect = 9e-23
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 49  AQSDFIFVTCALTKD----TEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKK 104
            ++D +     L KD    T  L        +KP AILIN  RG ++D  AL+  L   +
Sbjct: 169 QEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQ 228

Query: 105 IGGAGLDVMIPEPLPADHPLVQLDN 129
                LDV   EP   +  L++  +
Sbjct: 229 PLSVVLDVWEGEP-DLNVALLEAVD 252

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380

 Score = 87.4 bits (217), Expect = 6e-21
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 49  AQSDFIFVTCALTKD----TEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKK 104
           A++D I +   L +D    T  L+   + + ++P   L+N SRG ++D +AL   L    
Sbjct: 166 AEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGA 225

Query: 105 IGGAGLDVMIPEPLPADHPLVQLDN 129
                LDV   E  P   P +    
Sbjct: 226 DLEVALDVWEGE--PQADPELAARC 248

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 38.4 bits (89), Expect = 6e-04
 Identities = 8/62 (12%), Positives = 15/62 (24%), Gaps = 5/62 (8%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
              D    T         ++     + M     +I+ +           E    K +   
Sbjct: 212 RDVDVCINTI-----PALVVTANVLAEMPSHTFVIDLASKPGGTDFRYAEKRGIKALLVP 266

Query: 109 GL 110
           GL
Sbjct: 267 GL 268

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	180
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	99.96
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	99.94
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	99.94
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	99.94
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	99.93
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	99.93
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	99.93
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	99.93
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	99.93
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	99.93
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	99.92
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	99.92
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	99.91
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	99.91
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	99.9
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	99.9
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	99.9
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	99.9
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	99.9
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	99.89
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	99.89
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	99.88
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	99.88
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	99.88
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	99.88
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	99.87
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	99.86
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	99.85
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	99.85
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	99.84
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	99.83
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	99.79
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	99.78
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	99.77
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	99.76
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	99.71
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	99.71
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	99.69
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	99.66
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	99.66
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	99.66
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	99.63
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	99.61
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	99.59
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	99.58
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	99.56
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	99.56
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	99.56
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	99.56
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	99.55
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	99.51
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	99.5
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	99.49
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	99.49
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	99.47
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	99.47
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	99.45
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	99.45
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	99.45
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	99.44
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	99.43
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	99.4
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	99.4
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	99.36
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	99.32
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	99.3
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	99.26
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	99.22
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	99.21
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	99.21
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	99.18
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	99.06
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	98.7
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	98.63
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	98.54
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	98.39
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	98.36
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	98.33
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.32
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	98.09
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	98.05
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	97.98
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	97.35
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	97.28
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	97.17
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	97.11
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	97.07
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	97.0
3qha_A	296	Putative oxidoreductase; seattle structural genomi	96.99
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	96.98
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	96.89
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	96.74
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	96.55
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	96.53
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	96.48
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	96.27
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	96.09
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	96.04
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	95.91
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	95.9
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	95.79
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	95.77
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	95.75
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	95.46
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	95.35
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	94.31
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	95.21
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	95.13
4ezb_A	317	Uncharacterized conserved protein; structural geno	95.04
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	94.82
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	94.73
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	94.72
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	94.29
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	94.24
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	94.04
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	93.8
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	93.58
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	92.75
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	92.53
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	92.34
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	90.58
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	90.2
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	89.75
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	89.57
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	87.5
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	86.68
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	85.92
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	85.59
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	85.06
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	84.88
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	84.75
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	84.75
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	83.62
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	83.55
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	83.53
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	82.35
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	80.21
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	80.04

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=99.96  E-value=1.1e-30  Score=220.67  Aligned_cols=129  Identities=27%  Similarity=0.312  Sum_probs=111.9

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCc-cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEe
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGS-KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILIN   84 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn   84 (180)
                      .|+||+.     +.|||++++||+...... +....+.+|+|++++||||++|+|+|++|+||||++.|++||+|+++||
T Consensus       149 ~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~~l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN  228 (334)
T 3kb6_A          149 TGRIGSRVAMYGLAFGMKVLCYDVVKREDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLIN  228 (334)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEE
T ss_pred             cchHHHHHHHhhcccCceeeecCCccchhhhhcCceecCHHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEe
Confidence            6888885     468999999997654322 2234678999999999999999999999999999999999999999999


Q ss_pred             cCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCC---------------CCCCCCceeec----ccCHHH
Q psy5266          85 TSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADH---------------PLVQLDNCGNG----LLDQEA  139 (180)
Q Consensus        85 ~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~---------------~l~~~~Nv~~g----~~~~~a  139 (180)
                      ++||++||+++|.++|++|+|.+|+||||++||++.++               +|+++|||+.|    ..+.++
T Consensus       229 ~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EPl~~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~T~ea  302 (334)
T 3kb6_A          229 TARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVIITPHIAYYTDKS  302 (334)
T ss_dssp             CSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHHHHTTGGGGTCCCHHHHHHHHHHTSTTEEECCSCTTCBHHH
T ss_pred             cCccccccHHHHHHHHHhCCceEEEEeCCCCCCCcccccccccccccccccchhhccCCCEEECCchhhChHHH
Confidence            99999999999999999999999999999999975554               67889999996    445554

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=99.94  E-value=8e-27  Score=201.86  Aligned_cols=142  Identities=27%  Similarity=0.292  Sum_probs=117.3

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEec
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINT   85 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~   85 (180)
                      .|+||+.     +.|||++.+||++............++++++++||+|++|+|++++|+++|+.+.|++||+|+++||+
T Consensus       164 lG~IG~~vA~~l~~~G~~V~~yd~~~~~~~~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~  243 (416)
T 3k5p_A          164 YGNIGSQVGNLAESLGMTVRYYDTSDKLQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINN  243 (416)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECTTCCCCBTTBEECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEEC
T ss_pred             eCHHHHHHHHHHHHCCCEEEEECCcchhcccCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEEC
Confidence            6778875     36899999999875433333456789999999999999999999999999999999999999999999


Q ss_pred             CCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCC----CCCCCCCceeec----ccCH-----------HHHHHHHHc
Q psy5266          86 SRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPAD----HPLVQLDNCGNG----LLDQ-----------EALVEFLRD  146 (180)
Q Consensus        86 ~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~----~~l~~~~Nv~~g----~~~~-----------~al~~~L~~  146 (180)
                      +||+++|+++|.++|+++++.+++||||++||++.+    +||+++|||+.+    ..+.           +.+.+++++
T Consensus       244 aRG~vvd~~aL~~aL~~g~i~gAalDVf~~EP~~~~~~~~~pL~~~~nvilTPHig~~T~ea~~~~~~~~~~nl~~~l~~  323 (416)
T 3k5p_A          244 ARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQERIGTEVTRKLVEYSDV  323 (416)
T ss_dssp             SCTTSBCHHHHHHHHHTTSEEEEEECCCSSCCSSTTSCCCCTTTTCTTEEECCSCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCChhhhHHHHHHHHHcCCccEEEeCCCCCCCCCcccccchhHhcCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999998654    789999999996    3444           347778888


Q ss_pred             cccccc
Q psy5266         147 KKIGGA  152 (180)
Q Consensus       147 g~l~ga  152 (180)
                      |...+.
T Consensus       324 g~~~~~  329 (416)
T 3k5p_A          324 GSTVGA  329 (416)
T ss_dssp             CCCTTB
T ss_pred             CCCCce
Confidence            876544

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=99.94  E-value=7.4e-27  Score=196.58  Aligned_cols=123  Identities=34%  Similarity=0.421  Sum_probs=111.3

Q ss_pred             cCCcccc-----ceeeeEEEeccccccC--CccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTG--GSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILI   83 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lv   83 (180)
                      .|+||+.     ..||+++.+||++...  .........++++++++||+|++|+|++++|+++|+.+.|++||+|+++|
T Consensus       148 lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailI  227 (324)
T 3hg7_A          148 TGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILF  227 (324)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSSCCCCTTCSEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEE
T ss_pred             ECHHHHHHHHHHHhCCCEEEEEcCChHHhhhhhcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEE
Confidence            6888885     3678999999887643  22334567899999999999999999999999999999999999999999


Q ss_pred             ecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266          84 NTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG  133 (180)
Q Consensus        84 n~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g  133 (180)
                      |++||+++|+++|.++|+++.+.+++||||++||++.++||+++|||++|
T Consensus       228 N~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilT  277 (324)
T 3hg7_A          228 NVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIIT  277 (324)
T ss_dssp             ECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTCTTEEEC
T ss_pred             ECCCchhhCHHHHHHHHHcCCceEEEeccCCCCCCCCCChhhcCCCEEEe
Confidence            99999999999999999999999999999999999999999999999996

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=99.94  E-value=5.2e-27  Score=196.86  Aligned_cols=123  Identities=21%  Similarity=0.215  Sum_probs=109.4

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCc--cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGS--KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILI   83 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lv   83 (180)
                      .|+||+.     +.||+++.+|+++.....  .......+|++++++||+|++|+|++++|+++|+.+.+++||+|+++|
T Consensus       147 ~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailI  226 (315)
T 3pp8_A          147 AGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVL  226 (315)
T ss_dssp             CSHHHHHHHHHHHTTTCCEEEEESSCCCCTTCEEEESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEE
T ss_pred             eCHHHHHHHHHHHHCCCEEEEEcCCchhhhhhhhhcccCCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEE
Confidence            6888885     357888888887655321  112234689999999999999999999999999999999999999999


Q ss_pred             ecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266          84 NTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG  133 (180)
Q Consensus        84 n~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g  133 (180)
                      |++||+++|+++|.++|+++.+.+++||||++||++.++||+++|||++|
T Consensus       227 N~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilT  276 (315)
T 3pp8_A          227 NLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMT  276 (315)
T ss_dssp             ECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGGCTTEEEC
T ss_pred             ECCCChhhhHHHHHHHHHhCCccEEEcCCCCCCCCCCCChhhcCCCEEEC
Confidence            99999999999999999999999999999999999999999999999996

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=99.93  E-value=2e-26  Score=193.96  Aligned_cols=123  Identities=31%  Similarity=0.379  Sum_probs=111.3

Q ss_pred             cCCcccc-----ceeeeEEEeccccccC--CccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTG--GSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILI   83 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lv   83 (180)
                      .|+||+.     +.||+++.+|+++...  .....+...+|++++++||+|++|+|++++|+++|+.+.+++||+|+++|
T Consensus       145 lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailI  224 (324)
T 3evt_A          145 TGQIGQSLAAKASALGMHVIGVNTTGHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLI  224 (324)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCSEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEE
T ss_pred             cCHHHHHHHHHHHhCCCEEEEECCCcchhHhHhhccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEE
Confidence            6788875     3678899999877543  22334567899999999999999999999999999999999999999999


Q ss_pred             ecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266          84 NTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG  133 (180)
Q Consensus        84 n~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g  133 (180)
                      |++||+++|+++|.++|+++.+.+++||||++||++.++||+++|||+++
T Consensus       225 N~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilT  274 (324)
T 3evt_A          225 NIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLIT  274 (324)
T ss_dssp             ECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSEEEC
T ss_pred             EcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcCCCEEEc
Confidence            99999999999999999999999999999999999999999999999996

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=99.93  E-value=2.8e-26  Score=194.57  Aligned_cols=122  Identities=23%  Similarity=0.290  Sum_probs=109.0

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCC--ccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGG--SKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILI   83 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lv   83 (180)
                      .|+||+.     +.||+++.+||++....  ..+.....++++++++||+|++|+|++++|+++|+.+.|++||+|+++|
T Consensus       181 lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailI  260 (345)
T 4g2n_A          181 MGRIGRAIATRARGFGLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVI  260 (345)
T ss_dssp             CSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHTTCEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEE
T ss_pred             eChhHHHHHHHHHHCCCEEEEECCCCcchhhhcCCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEE
Confidence            6888885     46889999998875321  1123334699999999999999999999999999999999999999999


Q ss_pred             ecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266          84 NTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG  133 (180)
Q Consensus        84 n~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g  133 (180)
                      |++||+++|+++|.++|+++++.+++||||++|| +.++||+++|||+++
T Consensus       261 N~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP-~~~~pL~~~~nvilT  309 (345)
T 4g2n_A          261 NISRGDLINDDALIEALRSKHLFAAGLDVFANEP-AIDPRYRSLDNIFLT  309 (345)
T ss_dssp             ECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT-SCCTTGGGCTTEEEC
T ss_pred             ECCCCchhCHHHHHHHHHhCCceEEEecCCCCCC-CCCchHHhCCCEEEc
Confidence            9999999999999999999999999999999999 889999999999996

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=99.93  E-value=5.3e-26  Score=193.23  Aligned_cols=123  Identities=22%  Similarity=0.389  Sum_probs=109.8

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCC--c--cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGG--S--KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAI   81 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~--~--~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~   81 (180)
                      .|+||+.     +.||+++.+||++....  .  .+.....++++++++||+|++|+|++++|+++|+.+.+++||+|++
T Consensus       172 ~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gai  251 (351)
T 3jtm_A          172 AGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVL  251 (351)
T ss_dssp             CSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEE
T ss_pred             eCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCE
Confidence            6788885     46888999998765321  1  1233456999999999999999999999999999999999999999


Q ss_pred             EEecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266          82 LINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG  133 (180)
Q Consensus        82 lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g  133 (180)
                      +||++||+++|+++|.++|+++.+.+++||||++||++.++||+++|||+++
T Consensus       252 lIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~pL~~~~nvilT  303 (351)
T 3jtm_A          252 IVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMT  303 (351)
T ss_dssp             EEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGTSTTBCCC
T ss_pred             EEECcCchhhCHHHHHHHHHhCCccEEEeCCCCCCCCCCCChhhcCCCEEEC
Confidence            9999999999999999999999999999999999999999999999999997

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=99.93  E-value=2.8e-26  Score=194.41  Aligned_cols=129  Identities=29%  Similarity=0.399  Sum_probs=112.7

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEec
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINT   85 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~   85 (180)
                      .|+||+.     +.||+++.+||++.....+....+.++++++++||+|++|+|++++|+++|+.+.|++||+|+++||+
T Consensus       156 lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~  235 (343)
T 2yq5_A          156 VGHIGSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINC  235 (343)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSSCCGGGTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEEC
T ss_pred             cCHHHHHHHHHHhhCCCEEEEECCChhhhhhccccccCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEEC
Confidence            6888885     46889999999887643333345669999999999999999999999999999999999999999999


Q ss_pred             CCCCccCHHHHHHHHhcCCcceEEeecCCCCC--CCCC-----------CCCCCCCceeec----ccCHHH
Q psy5266          86 SRGGLLDQEALVEFLRDKKIGGAGLDVMIPEP--LPAD-----------HPLVQLDNCGNG----LLDQEA  139 (180)
Q Consensus        86 ~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep--~~~~-----------~~l~~~~Nv~~g----~~~~~a  139 (180)
                      +||+++|+++|.++|+++.+.+++||||++||  ++.+           +||+++|||+++    ..+.++
T Consensus       236 aRg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~l~~~~~pL~~~~nvilTPHia~~t~ea  306 (343)
T 2yq5_A          236 ARGELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPHSAFYTETS  306 (343)
T ss_dssp             SCGGGBCHHHHHHHHHHTSSSCEEESCCTTGGGTTTCCSCCTTTSCHHHHHHTTCTTEEECSSCTTCBHHH
T ss_pred             CCChhhhHHHHHHHHHcCCCcEEEecccccCCCccccccccccccccchhHHhcCCCEEECCccccchHHH
Confidence            99999999999999999999999999999999  4444           379999999996    455544

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=99.93  E-value=8.8e-26  Score=192.70  Aligned_cols=122  Identities=28%  Similarity=0.361  Sum_probs=105.7

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCc--cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGS--KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILI   83 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lv   83 (180)
                      .|+||+.     ..||+++++||++.....  +......+|++++++||+|++|+|++++|+++|+.+.|++||+|+++|
T Consensus       184 lG~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailI  263 (365)
T 4hy3_A          184 FGDLGKALRRVLSGFRARIRVFDPWLPRSMLEENGVEPASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFI  263 (365)
T ss_dssp             CSHHHHHHHHHHTTSCCEEEEECSSSCHHHHHHTTCEECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEE
T ss_pred             CCcccHHHHHhhhhCCCEEEEECCCCCHHHHhhcCeeeCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEE
Confidence            6778875     468999999998753211  112346799999999999999999999999999999999999999999


Q ss_pred             ecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266          84 NTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG  133 (180)
Q Consensus        84 n~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g  133 (180)
                      |++||+++|+++|.++|++++|. ++||||++||++.++||+++|||+++
T Consensus       264 N~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~EPl~~~~pL~~~~nvilT  312 (365)
T 4hy3_A          264 LLSRADVVDFDALMAAVSSGHIV-AASDVYPEEPLPLDHPVRSLKGFIRS  312 (365)
T ss_dssp             ECSCGGGSCHHHHHHHHHTTSSE-EEESCCSSSSCCTTCGGGTCTTEEEC
T ss_pred             ECcCCchhCHHHHHHHHHcCCce-EEeeCCCCCCCCCCChhhcCCCEEEC
Confidence            99999999999999999999998 99999999999899999999999996

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=99.93  E-value=1.2e-25  Score=194.20  Aligned_cols=142  Identities=27%  Similarity=0.356  Sum_probs=113.2

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEec
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINT   85 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~   85 (180)
                      .|+||+.     +.|||++.+||+.............++++++++||+|++|+|++++|+++|+.+.|++||+|+++||+
T Consensus       153 lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~  232 (404)
T 1sc6_A          153 YGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINA  232 (404)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEEC
T ss_pred             ECHHHHHHHHHHHHCCCEEEEEcCCchhccCCceecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEEC
Confidence            6778874     36899999999876532222345569999999999999999999999999999999999999999999


Q ss_pred             CCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCC----CCCCCCCCceeec----ccCHH-----------HHHHHHHc
Q psy5266          86 SRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPA----DHPLVQLDNCGNG----LLDQE-----------ALVEFLRD  146 (180)
Q Consensus        86 ~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~----~~~l~~~~Nv~~g----~~~~~-----------al~~~L~~  146 (180)
                      +||+++|+++|.++|+++.+.+++||||++||++.    ++||+++|||+++    ..+.|           .+.++++.
T Consensus       233 aRg~~vd~~aL~~aL~~g~i~gA~lDVf~~EP~~~~~~~~~pL~~~~nvilTPHi~~~T~ea~~~~~~~~~~nl~~~l~g  312 (404)
T 1sc6_A          233 SRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDN  312 (404)
T ss_dssp             SCSSSBCHHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECCCSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCChHHhHHHHHHHHHcCCccEEEEeecCCCCCCccccccchhhcCCCEEECCCCCCCcHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999753    4799999999996    34443           46677777


Q ss_pred             cccccc
Q psy5266         147 KKIGGA  152 (180)
Q Consensus       147 g~l~ga  152 (180)
                      |.+.+.
T Consensus       313 ~~~~~~  318 (404)
T 1sc6_A          313 GSTLSA  318 (404)
T ss_dssp             CCCTTB
T ss_pred             CCCcce
Confidence            765433

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=99.92  E-value=1.2e-25  Score=191.17  Aligned_cols=123  Identities=26%  Similarity=0.379  Sum_probs=109.5

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCC---ccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGG---SKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL   82 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~l   82 (180)
                      .|+||+.     +.||+++.+||++....   ..+.....++++++++||+|++|+|++++|+++|+.+.+++||+|+++
T Consensus       168 lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gail  247 (352)
T 3gg9_A          168 YGKIGQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALF  247 (352)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEE
T ss_pred             ECHHHHHHHHHHHhCCCEEEEECCCCCHHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEE
Confidence            6778875     35788888888875321   122334459999999999999999999999999999999999999999


Q ss_pred             EecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266          83 INTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG  133 (180)
Q Consensus        83 vn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g  133 (180)
                      ||++||+++|+++|.++|+++.+.+++||||++||++.++||+++|||+++
T Consensus       248 IN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilT  298 (352)
T 3gg9_A          248 VNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICT  298 (352)
T ss_dssp             EECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSCCCSCCGGGGCTTEEEC
T ss_pred             EECCCchhhcHHHHHHHHHhCCccEEEecccCCCCCCCCChhhcCCCEEEC
Confidence            999999999999999999999999999999999999999999999999996

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=99.91  E-value=5.8e-25  Score=186.13  Aligned_cols=121  Identities=23%  Similarity=0.324  Sum_probs=84.1

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEec
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINT   85 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~   85 (180)
                      .|+||+.     ..||+++..||++.... .......+++|++++||+|++|+|++++|+++|+.+.+++||+++++||+
T Consensus       179 lG~IG~~vA~~l~~~G~~V~~~dr~~~~~-~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~  257 (340)
T 4dgs_A          179 LGQIGRALASRAEAFGMSVRYWNRSTLSG-VDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNV  257 (340)
T ss_dssp             CSHHHHHHHHHHHTTTCEEEEECSSCCTT-SCCEECSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEEC
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEcCCcccc-cCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEEC
Confidence            6778875     35788888998876542 23345679999999999999999999999999999999999999999999


Q ss_pred             CCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266          86 SRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG  133 (180)
Q Consensus        86 ~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g  133 (180)
                      +||+++|+++|.++|+++.+.+++||||++||++. +||+++|||+++
T Consensus       258 aRG~vvde~aL~~aL~~g~i~gA~LDVf~~EP~~~-~~L~~~~nvilT  304 (340)
T 4dgs_A          258 ARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIR-SEFHTTPNTVLM  304 (340)
T ss_dssp             SCC--------------CCSSEEEESCCSSSSSCC-SHHHHSSSEEEC
T ss_pred             CCCcccCHHHHHHHHHcCCceEEEeCCcCCCCCCc-cchhhCCCEEEc
Confidence            99999999999999999999999999999999754 599999999996

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=99.91  E-value=3.4e-25  Score=186.89  Aligned_cols=123  Identities=25%  Similarity=0.322  Sum_probs=109.7

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCc---cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGS---KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL   82 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~l   82 (180)
                      .|+||+.     +.||+++.+||++.....   +......++++++++||+|++|+|++++|+++|+.+.+++||+|+++
T Consensus       153 ~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gail  232 (330)
T 4e5n_A          153 MGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALL  232 (330)
T ss_dssp             CSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEE
T ss_pred             eCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCceeCCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEE
Confidence            7788875     468999999998763211   11134569999999999999999999999999999999999999999


Q ss_pred             EecCCCCccCHHHHHHHHhcCCcceEEeecCCCC-------CCCCCCCCCCCCceeec
Q psy5266          83 INTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPE-------PLPADHPLVQLDNCGNG  133 (180)
Q Consensus        83 vn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~e-------p~~~~~~l~~~~Nv~~g  133 (180)
                      ||++||+++|+++|.++|+++.+.+++||||++|       |++.++||+++|||+++
T Consensus       233 IN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~E~~~~~~~Pl~~~~~L~~~~nvilT  290 (330)
T 4e5n_A          233 VNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFT  290 (330)
T ss_dssp             EECSCGGGBCHHHHHHHHHHTSEEEEEESCCGGGCTTCTTCCSSCCHHHHTCSSEEEC
T ss_pred             EECCCCchhCHHHHHHHHHhCCccEEEecccccccccccCCCCCCCchHHcCCCEEEC
Confidence            9999999999999999999999999999999999       98889999999999996

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=99.90  E-value=5.8e-24  Score=183.01  Aligned_cols=123  Identities=25%  Similarity=0.357  Sum_probs=109.0

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCc----cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGS----KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAI   81 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~   81 (180)
                      .|+||+.     +.||+++.+||++.....    .+.....++++++++||+|++|+|++++|+++|+.+.+++||+|++
T Consensus       199 lG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gai  278 (393)
T 2nac_A          199 AGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAY  278 (393)
T ss_dssp             CSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEE
T ss_pred             ECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCE
Confidence            7788885     367888888887753211    1223346899999999999999999999999999999999999999


Q ss_pred             EEecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266          82 LINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG  133 (180)
Q Consensus        82 lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g  133 (180)
                      +||++||.++|+++|.++|+++.+.+++||||.+||++.++||++++|++++
T Consensus       279 lIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~pL~~~~nvilT  330 (393)
T 2nac_A          279 IVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMT  330 (393)
T ss_dssp             EEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSCCTTCGGGTSTTBCCC
T ss_pred             EEECCCchHhhHHHHHHHHHcCCeeEEEEEecCCCCCCCCChhHcCCCEEEC
Confidence            9999999999999999999999999999999999999889999999999996

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=99.90  E-value=6.2e-24  Score=181.31  Aligned_cols=123  Identities=27%  Similarity=0.342  Sum_probs=108.6

Q ss_pred             cCCcccc-----ceeeeE-EEeccccccCCc----cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCc
Q psy5266          11 TGTPGQV-----HLIVCV-LIRYHVDLTGGS----KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTA   80 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~-~~~~~~~~~~~~----~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~   80 (180)
                      .|+||+.     +.||++ +.+||++.....    .+.....++++++++||+|++|+|++++|+++|+.+.+++||+|+
T Consensus       172 ~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga  251 (364)
T 2j6i_A          172 AGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGA  251 (364)
T ss_dssp             CSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTE
T ss_pred             cCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCC
Confidence            7888885     367886 888886653211    122344689999999999999999999999999999999999999


Q ss_pred             EEEecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCC--C---ceeec
Q psy5266          81 ILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQL--D---NCGNG  133 (180)
Q Consensus        81 ~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~--~---Nv~~g  133 (180)
                      ++||++||+++|+++|.++|+++.+.+++||||++||++.++||+.+  |   ||++|
T Consensus       252 ~lIn~arG~~vd~~aL~~aL~~g~i~gA~LDVf~~EP~~~~~pL~~~~~~~~~nvilT  309 (364)
T 2j6i_A          252 WLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMT  309 (364)
T ss_dssp             EEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCHHHHCCCTTSCCEEEC
T ss_pred             EEEECCCCchhCHHHHHHHHHcCCCcEEEEecCCCCCCCCCChHHhccCCccCcEEEC
Confidence            99999999999999999999999999999999999999999999999  9   99996

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=99.90  E-value=2.5e-24  Score=181.72  Aligned_cols=123  Identities=28%  Similarity=0.359  Sum_probs=107.6

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEec
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINT   85 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~   85 (180)
                      .|+||+.     +.||+++.+||++.....+....+.++++++++||+|++|+|++++|+++|+.+.+++||+|+++||+
T Consensus       153 ~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~  232 (333)
T 1dxy_A          153 TGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINT  232 (333)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSSCCSSCCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEEC
T ss_pred             cCHHHHHHHHHHHHCCCEEEEECCCcchhhHhccccCCHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEEC
Confidence            6888885     36899999999877643222234569999999999999999999999999999999999999999999


Q ss_pred             CCCCccCHHHHHHHHhcCCcceEEeecCCCCCC--C-------CC----CCCCCCCceeec
Q psy5266          86 SRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPL--P-------AD----HPLVQLDNCGNG  133 (180)
Q Consensus        86 ~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~--~-------~~----~~l~~~~Nv~~g  133 (180)
                      +||+++|+++|.++|+++.+.+++||||++||.  +       ..    +||+++|||++|
T Consensus       233 srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~pL~~~~nvi~T  293 (333)
T 1dxy_A          233 ARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLS  293 (333)
T ss_dssp             SCTTSBCHHHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEEC
T ss_pred             CCCcccCHHHHHHHHHhCCccEEEEecCCCCCCcccccccccccCccchhHHhcCCCEEEC
Confidence            999999999999999999999999999999983  1       12    479999999996

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=99.90  E-value=4.1e-24  Score=180.22  Aligned_cols=123  Identities=29%  Similarity=0.364  Sum_probs=107.6

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEec
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINT   85 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~   85 (180)
                      .|+||+.     +.||+++.+||++.....+......++++++++||+|++|+|++++|+++|+.+.+++||+|+++||+
T Consensus       154 ~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~  233 (331)
T 1xdw_A          154 LGRIGRVAAQIFHGMGATVIGEDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNC  233 (331)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSSCCCSCTTTCEECCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEEC
T ss_pred             cCHHHHHHHHHHHHCCCEEEEECCCccHHHHhccccCCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEEC
Confidence            6788875     35889999999877543222245669999999999999999999999999999999999999999999


Q ss_pred             CCCCccCHHHHHHHHhcCCcceEEeecCCCCCC--CCC-------C----CCCCC-Cceeec
Q psy5266          86 SRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPL--PAD-------H----PLVQL-DNCGNG  133 (180)
Q Consensus        86 ~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~--~~~-------~----~l~~~-~Nv~~g  133 (180)
                      +||+++|+++|.++|+++.+.+++||||++||.  +.+       +    ||+++ |||+++
T Consensus       234 srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~~nvilT  295 (331)
T 1xdw_A          234 ARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLIT  295 (331)
T ss_dssp             SCGGGBCHHHHHHHHHHTSEEEEEESCCTTGGGTTTCCCTTSCCSSHHHHHHHHTTTTEEEC
T ss_pred             CCcccccHHHHHHHHHhCCceEEEEecCCCCCCcccccccccccCccchHHHHhCCCCEEEc
Confidence            999999999999999999999999999999994  332       3    69999 999996

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=99.90  E-value=1.3e-23  Score=174.33  Aligned_cols=119  Identities=18%  Similarity=0.197  Sum_probs=106.7

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEec
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINT   85 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~   85 (180)
                      .|+||+.     ..||+++.+||++..... ......++++++++||+|++|+|++++|+++|+.+.+++||+|+++||+
T Consensus       130 lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~-~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~  208 (290)
T 3gvx_A          130 YGGIGRRVAHLAKAFGMRVIAYTRSSVDQN-VDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNV  208 (290)
T ss_dssp             CSHHHHHHHHHHHHHTCEEEEECSSCCCTT-CSEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEEC
T ss_pred             cCchhHHHHHHHHhhCcEEEEEeccccccc-cccccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEe
Confidence            6778875     357888999988765322 2334569999999999999999999999999999999999999999999


Q ss_pred             CCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266          86 SRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG  133 (180)
Q Consensus        86 ~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g  133 (180)
                      +||.++|+++|.++|+++.+.++++|||+.||+   +||+++||++++
T Consensus       209 aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~---~pL~~~~nvilT  253 (290)
T 3gvx_A          209 ARADVVSKPDMIGFLKERSDVWYLSDVWWNEPE---ITETNLRNAILS  253 (290)
T ss_dssp             SCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTS---CCSCCCSSEEEC
T ss_pred             ehhcccCCcchhhhhhhccceEEeeccccCCcc---cchhhhhhhhcC
Confidence            999999999999999999999999999999996   899999999997

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=99.89  E-value=6.7e-24  Score=179.08  Aligned_cols=123  Identities=24%  Similarity=0.267  Sum_probs=105.9

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCccceeecc-CHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEe
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQVYLIL-VIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILIN   84 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn   84 (180)
                      .|+||+.     +.||+++.+||++.....+...... ++++++++||+|++|+|++++|+++|+.+.+++||+|+++||
T Consensus       154 ~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn  233 (333)
T 1j4a_A          154 TGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVN  233 (333)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEE
T ss_pred             cCHHHHHHHHHHHHCCCEEEEECCCcchhHHhhCeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEE
Confidence            7788875     3578899999887653211112334 899999999999999999999999999999999999999999


Q ss_pred             cCCCCccCHHHHHHHHhcCCcceEEeecCCCCC--CCCCC-----------CCCCCCceeec
Q psy5266          85 TSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEP--LPADH-----------PLVQLDNCGNG  133 (180)
Q Consensus        85 ~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep--~~~~~-----------~l~~~~Nv~~g  133 (180)
                      ++||+++|+++|.++|+++.+.+|+||||++||  ++.++           +|+++|||+++
T Consensus       234 ~arg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~l~~~~~~~~~~~p~~~~L~~~~nvilT  295 (333)
T 1j4a_A          234 VSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVT  295 (333)
T ss_dssp             CSCGGGBCHHHHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEEC
T ss_pred             CCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCccccccccccCCccchhhHHhCCCEEEC
Confidence            999999999999999999999999999999999  44443           59999999996

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=99.89  E-value=2.8e-23  Score=173.26  Aligned_cols=121  Identities=16%  Similarity=0.187  Sum_probs=109.2

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEec
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINT   85 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~   85 (180)
                      .|+||+.     +.||+++.+|+++...  .+.....++++++++||+|++|+|++++|+++|+.+.+++||+|+++||+
T Consensus       132 ~G~IG~~~A~~l~~~G~~V~~~dr~~~~--~~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~  209 (303)
T 1qp8_A          132 LGEIGTRVGKILAALGAQVRGFSRTPKE--GPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNV  209 (303)
T ss_dssp             CSTHHHHHHHHHHHTTCEEEEECSSCCC--SSSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEEC
T ss_pred             cCHHHHHHHHHHHHCCCEEEEECCCccc--cCcccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEEC
Confidence            7888885     3578889999877651  13345678999999999999999999999999999999999999999999


Q ss_pred             CCCCccCHHHHHHHHhcCCcceEEeecC-CCCCCCCCCCCCCCCceeec
Q psy5266          86 SRGGLLDQEALVEFLRDKKIGGAGLDVM-IPEPLPADHPLVQLDNCGNG  133 (180)
Q Consensus        86 ~Rg~~vd~~al~~~L~~~~i~~~~lDv~-~~ep~~~~~~l~~~~Nv~~g  133 (180)
                      +||.++|+++|.++|+++.+.++++||| ++||++.+++|++++|++++
T Consensus       210 srg~~vd~~aL~~aL~~g~i~gA~lDv~~~~ep~~~~~~L~~~~nvilt  258 (303)
T 1qp8_A          210 GRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVAT  258 (303)
T ss_dssp             SCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEEEC
T ss_pred             CCCcccCHHHHHHHHHhCCceEEEeccCCCCCCCCCCChhhcCCCEEEC
Confidence            9999999999999999999999999999 88998888999999999996

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=99.88  E-value=2.4e-23  Score=178.29  Aligned_cols=120  Identities=23%  Similarity=0.185  Sum_probs=103.6

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCccceeeccCHHHHhccCCEEEEccCCCCC----CcceeCHhHHhccCCCcE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKD----TEQLIGRKQFSLMKPTAI   81 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~----T~glIg~~~i~~mk~g~~   81 (180)
                      .|+||+.     +.||+++.+||+...... ....+.++++++++||+|++|+|++++    |+++|+.+.|++||+|++
T Consensus       127 lG~IG~~vA~~l~a~G~~V~~~d~~~~~~~-~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gai  205 (381)
T 3oet_A          127 VGNVGSRLQTRLEALGIRTLLCDPPRAARG-DEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAI  205 (381)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECHHHHHTT-CCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEE
T ss_pred             ECHHHHHHHHHHHHCCCEEEEECCChHHhc-cCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHHHhcCCCCcE
Confidence            6888885     367888888887654221 234678999999999999999999999    999999999999999999


Q ss_pred             EEecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266          82 LINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG  133 (180)
Q Consensus        82 lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g  133 (180)
                      +||++||+++|+++|.++|+++++.+++||||++||++ +++|+.++ ++.+
T Consensus       206 lIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e~EP~~-~~~L~~~~-~i~T  255 (381)
T 3oet_A          206 LINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDL-NVALLEAV-DIGT  255 (381)
T ss_dssp             EEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSC-CHHHHHHS-SEEC
T ss_pred             EEECCCCcccCHHHHHHHHHhCCCeEEEeeccccCCCC-cchhhhCC-EEEC
Confidence            99999999999999999999999999999999999975 45677664 5554

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=99.88  E-value=7.4e-23  Score=172.92  Aligned_cols=128  Identities=28%  Similarity=0.355  Sum_probs=110.2

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCc--cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGS--KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILI   83 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lv   83 (180)
                      .|+||+.     +.||+++.+||++.....  +.-....++++++++||+|++|+|++++|+++|+.+.+++||+|+++|
T Consensus       173 lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailI  252 (335)
T 2g76_A          173 LGRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVV  252 (335)
T ss_dssp             CSHHHHHHHHHHHTTTCEEEEECSSSCHHHHHHTTCEECCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEE
T ss_pred             ECHHHHHHHHHHHHCCCEEEEECCCcchhhhhhcCceeCCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEE
Confidence            7888875     357899999998754310  001234689999999999999999999999999999999999999999


Q ss_pred             ecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec----ccCHHH
Q psy5266          84 NTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG----LLDQEA  139 (180)
Q Consensus        84 n~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g----~~~~~a  139 (180)
                      |++||.++|+++|.++|+++.+.+++||||+.|| +.+++|++++|++++    ..+.++
T Consensus       253 N~arg~vvd~~aL~~aL~~g~i~gA~lDV~~~EP-~~~~~L~~~~nvilTPH~~~~t~e~  311 (335)
T 2g76_A          253 NCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALVDHENVISCPHLGASTKEA  311 (335)
T ss_dssp             ECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSS-CSCCHHHHSTTEEECSSCTTCBHHH
T ss_pred             ECCCccccCHHHHHHHHHhCCccEEEEeecCCCC-CCCchHHhCCCEEECCcCCCCCHHH
Confidence            9999999999999999999999999999999999 678999999999996    445544

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=99.88  E-value=2.6e-22  Score=170.32  Aligned_cols=123  Identities=29%  Similarity=0.445  Sum_probs=107.9

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCcc---ceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGSK---QVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL   82 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~l   82 (180)
                      .|+||+.     +.||+++.+||++......   +.....++++++++||+|++|+|++++|+++|+.+.+++||+|+++
T Consensus       176 ~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gail  255 (347)
T 1mx3_A          176 LGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFL  255 (347)
T ss_dssp             CSHHHHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEE
T ss_pred             ECHHHHHHHHHHHHCCCEEEEECCCcchhhHhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEE
Confidence            6778875     3578899999877543211   1233458999999999999999999999999999999999999999


Q ss_pred             EecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCC-CCCCCCCCCceeec
Q psy5266          83 INTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLP-ADHPLVQLDNCGNG  133 (180)
Q Consensus        83 vn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~-~~~~l~~~~Nv~~g  133 (180)
                      ||++||.++|+++|.++|+++.+.++++||++.||++ .+++|+.++|++.+
T Consensus       256 IN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~~L~~~~nvi~t  307 (347)
T 1mx3_A          256 VNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICT  307 (347)
T ss_dssp             EECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEEC
T ss_pred             EECCCChHHhHHHHHHHHHhCCCcEEEEeecccCCCCCCCchHHhCCCEEEE
Confidence            9999999999999999999999999999999999976 46899999999996

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=99.88  E-value=5.2e-23  Score=171.86  Aligned_cols=130  Identities=36%  Similarity=0.458  Sum_probs=112.2

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCc--cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGS--KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILI   83 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lv   83 (180)
                      .|+||+.     +.||+++.+||++.....  +.-....++++++++||+|++|+|++++|+++|+.+.+++||+|+++|
T Consensus       150 ~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~li  229 (307)
T 1wwk_A          150 FGRIGYQVAKIANALGMNILLYDPYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILI  229 (307)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEE
T ss_pred             cCHHHHHHHHHHHHCCCEEEEECCCCChhhHhhcCccccCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEE
Confidence            6778875     357889999998765310  001234589999999999999999999999999999999999999999


Q ss_pred             ecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec----ccCHHHH
Q psy5266          84 NTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG----LLDQEAL  140 (180)
Q Consensus        84 n~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g----~~~~~al  140 (180)
                      |++||.++|+++|.++|+++.+.++++|||+.||++.+++|++++|++++    ..+.++.
T Consensus       230 n~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~  290 (307)
T 1wwk_A          230 NTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQ  290 (307)
T ss_dssp             ECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECSSCTTCBHHHH
T ss_pred             ECCCCcccCHHHHHHHHHhCCCcEEEEecCCCCCCCCCChHHhCCCEEECCccccCcHHHH
Confidence            99999999999999999999999999999999998889999999999996    4555553

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=99.87  E-value=4.3e-22  Score=166.64  Aligned_cols=119  Identities=38%  Similarity=0.497  Sum_probs=107.7

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEec
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINT   85 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~   85 (180)
                      .|+||+.     +.||+++.+|+++.....   ....++++++++||+|++|+|++++|.++|+.+.+++||+|+++||+
T Consensus       152 ~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~---~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~  228 (311)
T 2cuk_A          152 MGRIGQAVAKRALAFGMRVVYHARTPKPLP---YPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNT  228 (311)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSSCCSSS---SCBCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEEC
T ss_pred             ECHHHHHHHHHHHHCCCEEEEECCCCcccc---cccCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEEC
Confidence            6777875     357888888888765432   34678999999999999999999999999999999999999999999


Q ss_pred             CCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266          86 SRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG  133 (180)
Q Consensus        86 ~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g  133 (180)
                      +||.++|+++|.++|+ +.+.++++|||+.||++.+++|++++|++++
T Consensus       229 srg~~vd~~aL~~aL~-g~i~ga~lDv~~~eP~~~~~~L~~~~nvilt  275 (311)
T 2cuk_A          229 ARGALVDTEALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNAVIT  275 (311)
T ss_dssp             SCGGGBCHHHHHHHHT-TTSSEEEESSCSSSSCCTTSGGGGCTTEEEC
T ss_pred             CCCCccCHHHHHHHHh-CcCCEEEEeeCCCCCCCCCChhhhCCCEEEC
Confidence            9999999999999999 9999999999999999889999999999996

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=99.86  E-value=3.2e-22  Score=167.97  Aligned_cols=122  Identities=22%  Similarity=0.261  Sum_probs=107.1

Q ss_pred             cCCcccc-----ceeeeEEEeccc-cccCCc---cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHV-DLTGGS---KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAI   81 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~-~~~~~~---~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~   81 (180)
                      .|+||+.     +.||+++.+||+ +.....   .+.....++++++++||+|++|+|++++|+++|+.+.+++||+|++
T Consensus       154 ~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gai  233 (320)
T 1gdh_A          154 FGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAI  233 (320)
T ss_dssp             CSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEE
T ss_pred             cCHHHHHHHHHHHHCCCEEEEECCCCcChhhhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcE
Confidence            6778875     357889999998 654310   1222334899999999999999999999999999999999999999


Q ss_pred             EEecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266          82 LINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG  133 (180)
Q Consensus        82 lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g  133 (180)
                      +||++||.++|+++|.++|+++.+.++++||++.|| +.+++|++++|++++
T Consensus       234 lIn~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~eP-~~~~~L~~~~nvilt  284 (320)
T 1gdh_A          234 VVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFLF  284 (320)
T ss_dssp             EEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT-SCCTTGGGCTTEEEC
T ss_pred             EEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCC-CCCChhhhCCCEEEC
Confidence            999999999999999999999999999999999999 889999999999996

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=99.85  E-value=7.9e-22  Score=165.11  Aligned_cols=122  Identities=23%  Similarity=0.311  Sum_probs=106.6

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCc--cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGS--KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILI   83 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lv   83 (180)
                      .|+||+.     +.+|+++.+||++.....  +.-....++++++++||+|++|+|++++|.++|+.+.+++||+|+++|
T Consensus       150 ~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lI  229 (313)
T 2ekl_A          150 FGRIGTKVGIIANAMGMKVLAYDILDIREKAEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIV  229 (313)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEE
T ss_pred             eCHHHHHHHHHHHHCCCEEEEECCCcchhHHHhcCceecCHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEE
Confidence            6888885     357889999988765310  001223589999999999999999999999999999999999999999


Q ss_pred             ecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCC---CCCCCCceeec
Q psy5266          84 NTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADH---PLVQLDNCGNG  133 (180)
Q Consensus        84 n~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~---~l~~~~Nv~~g  133 (180)
                      |++||.++|+++|.++|+++.+.+++|||++.||++ ++   +|++++|++++
T Consensus       230 n~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~-~~~~~~L~~~~nvilt  281 (313)
T 2ekl_A          230 NTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPK-EEWELELLKHERVIVT  281 (313)
T ss_dssp             ESSCGGGBCHHHHHHHHHTTCEEEEEESCCSSSSCC-SHHHHHHHHSTTEEEC
T ss_pred             ECCCCcccCHHHHHHHHHcCCCcEEEEecCCCCCCC-CcccchHhhCCCEEEC
Confidence            999999999999999999999999999999999976 66   99999999996

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=99.85  E-value=9.9e-22  Score=168.42  Aligned_cols=120  Identities=23%  Similarity=0.271  Sum_probs=103.3

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCccceeeccCHHHHhccCCEEEEccCCCCC----CcceeCHhHHhccCCCcE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKD----TEQLIGRKQFSLMKPTAI   81 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~----T~glIg~~~i~~mk~g~~   81 (180)
                      .|+||+.     +.||+++.+||+.......+ ....++++++++||+|++|+|++++    |+++|+.+.+++||+|++
T Consensus       124 lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~g-~~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gai  202 (380)
T 2o4c_A          124 AGQVGGRLVEVLRGLGWKVLVCDPPRQAREPD-GEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTW  202 (380)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECHHHHHHSTT-SCCCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEE
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEcCChhhhccC-cccCCHHHHHHhCCEEEEeccCccccccchhhhcCHHHHhhCCCCcE
Confidence            6888885     35788888888765422111 2467999999999999999999999    999999999999999999


Q ss_pred             EEecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266          82 LINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG  133 (180)
Q Consensus        82 lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g  133 (180)
                      +||++||+++|+++|.++|+++.+.+++||||++||. .+++++. +|++.+
T Consensus       203 lIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~~EP~-~~~~l~~-~nvi~T  252 (380)
T 2o4c_A          203 LVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQ-ADPELAA-RCLIAT  252 (380)
T ss_dssp             EEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTS-CCHHHHT-TCSEEC
T ss_pred             EEECCCCcccCHHHHHHHHHhCCCceEEeeeeccCCC-Cchhhcc-CCEEEc
Confidence            9999999999999999999999999999999999995 4566776 488886

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=99.84  E-value=5e-21  Score=161.61  Aligned_cols=121  Identities=28%  Similarity=0.427  Sum_probs=106.7

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEec
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINT   85 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~   85 (180)
                      .|+||+.     ..+|+++..||++.... .+.....++++++++||+|++|+|++++|+++|+.+.+++||+++++||+
T Consensus       172 ~G~iG~~vA~~l~~~G~~V~~~dr~~~~~-~g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~  250 (333)
T 3ba1_A          172 LGRIGLAVAERAEAFDCPISYFSRSKKPN-TNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINI  250 (333)
T ss_dssp             CSHHHHHHHHHHHTTTCCEEEECSSCCTT-CCSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEEC
T ss_pred             CCHHHHHHHHHHHHCCCEEEEECCCchhc-cCceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEEC
Confidence            6777774     24678888888776532 23345678999999999999999999999999999999999999999999


Q ss_pred             CCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266          86 SRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG  133 (180)
Q Consensus        86 ~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g  133 (180)
                      +||.++|+++|.++|+++.+.++++|||+.||.+. ++|+.++||+++
T Consensus       251 srG~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~-~~L~~~~nvilt  297 (333)
T 3ba1_A          251 GRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVP-EKLFGLENVVLL  297 (333)
T ss_dssp             SCGGGBCHHHHHHHHHHTSSCEEEESCCTTTTCCC-GGGGGCTTEEEC
T ss_pred             CCCchhCHHHHHHHHHcCCCeEEEEecCCCCCCCc-chhhcCCCEEEC
Confidence            99999999999999999999999999999999755 999999999986

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=99.83  E-value=9.7e-21  Score=160.59  Aligned_cols=122  Identities=27%  Similarity=0.351  Sum_probs=105.8

Q ss_pred             cCCcccc-----c-eeeeEEEeccccccCCc--c--ceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCc
Q psy5266          11 TGTPGQV-----H-LIVCVLIRYHVDLTGGS--K--QVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTA   80 (180)
Q Consensus        11 ~G~iG~~-----~-~~~~~~~~~~~~~~~~~--~--~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~   80 (180)
                      .|+||+.     + .+|+++..||++.....  .  +.....++++++++||+|++|+|++++|.++|+.+.+++||+++
T Consensus       171 ~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~~~~l~~mk~ga  250 (348)
T 2w2k_A          171 LGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGS  250 (348)
T ss_dssp             CSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTTCBCHHHHHHSCTTE
T ss_pred             ECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHHHhhHHHHhcCCCCC
Confidence            6777774     4 57888989988764211  1  22233489999999999999999999999999999999999999


Q ss_pred             EEEecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266          81 ILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG  133 (180)
Q Consensus        81 ~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g  133 (180)
                      ++||++||.++++++|.++|+++.+.++++|||..|| ..+.+|+.++|++++
T Consensus       251 ilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP-~~~~~L~~~~nvilt  302 (348)
T 2w2k_A          251 RIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEP-QVSKELIEMKHVTLT  302 (348)
T ss_dssp             EEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTT-SCCHHHHTSSSEEEC
T ss_pred             EEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCCC-CCCchhhcCCCEEEc
Confidence            9999999999999999999999999999999999999 667889999999986

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=99.79  E-value=1.3e-19  Score=152.74  Aligned_cols=121  Identities=23%  Similarity=0.337  Sum_probs=105.1

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCc-cc-eeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGS-KQ-VYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILI   83 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~-~~-~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lv   83 (180)
                      .|+||+.     +.+|+++..||++..... .. .....++++++++||+|++|+|++++|.++|+.+.++.||++ ++|
T Consensus       154 ~G~iG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ili  232 (333)
T 2d0i_A          154 MGAIGKAIARRLIPFGVKLYYWSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLV  232 (333)
T ss_dssp             CSHHHHHHHHHHGGGTCEEEEECSSCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEE
T ss_pred             cCHHHHHHHHHHHHCCCEEEEECCCcchhhhhhcCceecCHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEE
Confidence            6677774     357888999988765310 00 123458999999999999999999999999999999999999 999


Q ss_pred             ecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCC-ceeec
Q psy5266          84 NTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLD-NCGNG  133 (180)
Q Consensus        84 n~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~-Nv~~g  133 (180)
                      |++||.++|+++|.++|+++.+.++++|||..||.+ +++|+.++ |++++
T Consensus       233 n~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~-~~~L~~~~~nvilt  282 (333)
T 2d0i_A          233 NIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVR-EHELFKYEWETVLT  282 (333)
T ss_dssp             ECSCGGGBCHHHHHHHHHTTCBCEEEESCCSSSSCS-CCGGGGCTTTEEEC
T ss_pred             ECCCCcccCHHHHHHHHHcCCceEEEecCCCCCCCC-CchHHcCCCCEEEc
Confidence            999999999999999999999999999999999977 89999999 99986

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=99.78  E-value=2e-19  Score=151.37  Aligned_cols=123  Identities=39%  Similarity=0.540  Sum_probs=105.9

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCc--cc-eeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGS--KQ-VYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL   82 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~--~~-~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~l   82 (180)
                      .|+||+.     ..+|+++..||++.....  .. .....++++++++||+|++|+|++++|.++|+.+.++.||+++++
T Consensus       163 ~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gail  242 (330)
T 2gcg_A          163 LGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVF  242 (330)
T ss_dssp             CSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEE
T ss_pred             cCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeCCHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEE
Confidence            5677774     246788888887653211  11 122348999999999999999999999999999999999999999


Q ss_pred             EecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266          83 INTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG  133 (180)
Q Consensus        83 vn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g  133 (180)
                      ||++||.++++++|.++|+++.+.++++||+.+||++.+++|++++|++.+
T Consensus       243 In~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~epl~~~~~l~~~~nvi~t  293 (330)
T 2gcg_A          243 INISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVIL  293 (330)
T ss_dssp             EECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEEC
T ss_pred             EECCCCcccCHHHHHHHHHcCCccEEEeCCCCCCCCCCCChhhcCCCEEEC
Confidence            999999999999999999999999999999999999889999999999985

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=99.77  E-value=1.3e-19  Score=152.82  Aligned_cols=122  Identities=34%  Similarity=0.435  Sum_probs=105.9

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCc--cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGS--KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILI   83 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lv   83 (180)
                      .|+||+.     ..+|+++..||++.....  +.-....++++++++||+|++|+|++++|.++|+.+.+..||+++++|
T Consensus       158 ~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailI  237 (334)
T 2dbq_A          158 LGRIGQAIAKRAKGFNMRILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILI  237 (334)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHCCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEE
T ss_pred             cCHHHHHHHHHHHhCCCEEEEECCCcchhhHhhcCcccCCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEE
Confidence            6777774     246888999988765310  001234689999999999999999999999999999999999999999


Q ss_pred             ecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266          84 NTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG  133 (180)
Q Consensus        84 n~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g  133 (180)
                      |++||.++++++|.++|+++.+.++++|||..|| +.+++|+.++|++++
T Consensus       238 n~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~EP-~~~~~L~~~~~vi~t  286 (334)
T 2dbq_A          238 NIARGKVVDTNALVKALKEGWIAGAGLDVFEEEP-YYNEELFKLDNVVLT  286 (334)
T ss_dssp             ECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSS-CCCHHHHHCTTEEEC
T ss_pred             ECCCCcccCHHHHHHHHHhCCeeEEEecCCCCCC-CCCchhhcCCCEEEC
Confidence            9999999999999999999999999999999999 788999999999985

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=99.76  E-value=1.1e-18  Score=155.33  Aligned_cols=122  Identities=30%  Similarity=0.467  Sum_probs=105.4

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCC-ccc-eeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGG-SKQ-VYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILI   83 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~-~~~-~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lv   83 (180)
                      +|+||+.     ..+|+++.+||++.... ... -....++++++++||+|++|+|++++|.++|+.+.+.+||+|++++
T Consensus       150 ~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ili  229 (529)
T 1ygy_A          150 LGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIV  229 (529)
T ss_dssp             CSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEE
T ss_pred             eCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCcEEcCHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEE
Confidence            6778875     24678888998865320 000 1233489999999999999999999999999999999999999999


Q ss_pred             ecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeec
Q psy5266          84 NTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNG  133 (180)
Q Consensus        84 n~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g  133 (180)
                      |++||.++++++|.++|+++.+.++++||+..||. .+++|++++|++.+
T Consensus       230 n~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~-~~~~L~~~~~vilT  278 (529)
T 1ygy_A          230 NAARGGLVDEAALADAITGGHVRAAGLDVFATEPC-TDSPLFELAQVVVT  278 (529)
T ss_dssp             ECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSC-SCCGGGGCTTEEEC
T ss_pred             ECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCC-CCchHHhCCCEEEc
Confidence            99999999999999999999999999999999994 68999999999986

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=99.71  E-value=8.1e-18  Score=141.46  Aligned_cols=121  Identities=26%  Similarity=0.298  Sum_probs=93.4

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCC--------ccCHHHHHHHHhcCCcceEEeecCCCCCCCCC-C
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGG--------LLDQEALVEFLRDKKIGGAGLDVMIPEPLPAD-H  122 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~--------~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~-~  122 (180)
                      ..+.++|.|+||.+.+++     ++. |..++...|..        .....++.++++++|++...++.+..+....+ .
T Consensus       136 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~  215 (324)
T 3hg7_A          136 QGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTAS  215 (324)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTCSEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTT
T ss_pred             cccccceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhhhcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHH
Confidence            457799999999999986     555 77777666542        12345799999999996665555433221111 1


Q ss_pred             CCCCCC------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266         123 PLVQLD------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       123 ~l~~~~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~  178 (180)
                      .+-.++      |+.|| ++++++|.++|++|+|+||++|||++||+|+++|||++|||++|+
T Consensus       216 ~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTP  278 (324)
T 3hg7_A          216 RFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITP  278 (324)
T ss_dssp             TTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTCTTEEECC
T ss_pred             HHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEeccCCCCCCCCCChhhcCCCEEEeC
Confidence            222232      88887 999999999999999999999999999999999999999999997

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=99.71  E-value=6.2e-18  Score=141.67  Aligned_cols=116  Identities=22%  Similarity=0.283  Sum_probs=92.4

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCC--------ccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGG--------LLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHP  123 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~--------~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~  123 (180)
                      ..+.++|.|+||.+.+++     ++. |..++...|..        .....++.++++++|++...++.+     +.+..
T Consensus       135 ~~l~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt-----~~t~~  209 (315)
T 3pp8_A          135 YTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNT-----AQTVG  209 (315)
T ss_dssp             CCSTTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTCEEEESHHHHHHHHHTCSEEEECCCCC-----GGGTT
T ss_pred             CCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhhhhhcccCCHHHHHhhCCEEEEecCCc-----hhhhh
Confidence            457789999999999986     565 77776665532        122478999999999954444433     33455


Q ss_pred             CCC------CC------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266         124 LVQ------LD------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       124 l~~------~~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~  178 (180)
                      +++      ++      |++|| +++++||+++|++|+++||++|||++||+|+++|||++|||++|+
T Consensus       210 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTP  277 (315)
T 3pp8_A          210 IINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTP  277 (315)
T ss_dssp             CBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGGCTTEEECS
T ss_pred             hccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccEEEcCCCCCCCCCCCChhhcCCCEEECC
Confidence            553      22      88887 999999999999999999999999999999999999999999997

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=99.69  E-value=2.3e-18  Score=145.33  Aligned_cols=115  Identities=22%  Similarity=0.257  Sum_probs=94.0

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc-------cCHHHHHHHHhcCCcceEEeecCCCCCC-CCCCC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL-------LDQEALVEFLRDKKIGGAGLDVMIPEPL-PADHP  123 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~-------vd~~al~~~L~~~~i~~~~lDv~~~ep~-~~~~~  123 (180)
                      ..+.++|.|+||.+.+++     ++. |+.++...|..-       +...++.++|+++|+      |+.+.|+ ++++.
T Consensus       137 ~~l~g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~~l~ell~~sDi------vslh~Plt~~T~~  210 (334)
T 3kb6_A          137 RELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKREDLKEKGCVYTSLDELLKESDV------ISLHVPYTKETHH  210 (334)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHTTCEECCHHHHHHHCSE------EEECCCCCTTTTT
T ss_pred             ceecCcEEEEECcchHHHHHHHhhcccCceeeecCCccchhhhhcCceecCHHHHHhhCCE------EEEcCCCChhhcc
Confidence            346788999999999996     666 777777665421       112358899999999      6666666 66788


Q ss_pred             CCCCC------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCC---------------CcccCCcEE
Q psy5266         124 LVQLD------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADH---------------PLVQLDNCE  175 (180)
Q Consensus       124 l~~~~------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~---------------pl~~~~nv~  175 (180)
                      |++.+            |++|| +++++||+++|++|+|+||++|||++||+|.++               |||++|||+
T Consensus       211 li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EPl~~~~~~~~~~~~~~~~~~~~L~~~~nvi  290 (334)
T 3kb6_A          211 MINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVI  290 (334)
T ss_dssp             CBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHHHHTTGGGGTCCCHHHHHHHHHHTSTTEE
T ss_pred             CcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCCCcccccccccccccccccchhhccCCCEE
Confidence            88743            99998 999999999999999999999999999998777               688899999


Q ss_pred             EcC
Q psy5266         176 IRG  178 (180)
Q Consensus       176 it~  178 (180)
                      +|+
T Consensus       291 lTP  293 (334)
T 3kb6_A          291 ITP  293 (334)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            997

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=99.66  E-value=1.6e-17  Score=140.97  Aligned_cols=115  Identities=26%  Similarity=0.409  Sum_probs=94.3

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCcc----------CHHHHHHHHhcCCcceEEeecCCCCCC-CC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGLL----------DQEALVEFLRDKKIGGAGLDVMIPEPL-PA  120 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~v----------d~~al~~~L~~~~i~~~~lDv~~~ep~-~~  120 (180)
                      ..+.++|.|+||.+.+++     ++. |+.++...|...-          ..+++.++++++|+      |+.+.|+ +.
T Consensus       160 ~~l~gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDv------V~l~~Plt~~  233 (351)
T 3jtm_A          160 YDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDV------IVINMPLTEK  233 (351)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSE------EEECSCCCTT
T ss_pred             ccccCCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCE------EEECCCCCHH
Confidence            357899999999999986     666 8888777765311          11368899999999      5556665 45


Q ss_pred             CCCCCCCC------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266         121 DHPLVQLD------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       121 ~~~l~~~~------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~  178 (180)
                      +..+++..            |++|| +++++||.++|++|+|+||++|||++||+|+++|||++|||++|+
T Consensus       234 t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~pL~~~~nvilTP  304 (351)
T 3jtm_A          234 TRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTP  304 (351)
T ss_dssp             TTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCC
T ss_pred             HHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhCCccEEEeCCCCCCCCCCCChhhcCCCEEECC
Confidence            66676522            88887 999999999999999999999999999999999999999999997

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=99.66  E-value=1.9e-17  Score=139.23  Aligned_cols=117  Identities=30%  Similarity=0.404  Sum_probs=92.5

Q ss_pred             ccCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCC--------ccCHHHHHHHHhcCCcceEEeecCCCCCCCCCC
Q psy5266          57 TCALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGG--------LLDQEALVEFLRDKKIGGAGLDVMIPEPLPADH  122 (180)
Q Consensus        57 h~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~--------~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~  122 (180)
                      ...+.++|.|+||.+.+++     ++. |..++...|..        .+...++.++++++|++...++.+     +.+.
T Consensus       132 ~~~l~gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt-----~~t~  206 (324)
T 3evt_A          132 TSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHETVAFTATADALATANFIVNALPLT-----PTTH  206 (324)
T ss_dssp             CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCSEEEEGGGCHHHHHHCSEEEECCCCC-----GGGT
T ss_pred             CccccCCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhHhhccccCCHHHHHhhCCEEEEcCCCc-----hHHH
Confidence            3457899999999999986     555 77777665532        122357889999999955444443     3345


Q ss_pred             CCCC------CC------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266         123 PLVQ------LD------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       123 ~l~~------~~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~  178 (180)
                      .+++      ++      |+.|| .+++++|.++|++|+++||++|||++||+|+++|||++|||++|+
T Consensus       207 ~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTP  275 (324)
T 3evt_A          207 HLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITP  275 (324)
T ss_dssp             TCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSEEECC
T ss_pred             HhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcCCCEEEcC
Confidence            5554      22      88887 999999999999999999999999999999999999999999997

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=99.66  E-value=3.5e-17  Score=138.67  Aligned_cols=114  Identities=27%  Similarity=0.360  Sum_probs=92.4

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCcc-------C-HHHHHHHHhcCCcceEEeecCCCCCC-CCCC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGLL-------D-QEALVEFLRDKKIGGAGLDVMIPEPL-PADH  122 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~v-------d-~~al~~~L~~~~i~~~~lDv~~~ep~-~~~~  122 (180)
                      ..+.++|.|+||.+.+++     ++. |+.++...|...-       . .+++.++++++|+      |+.+.|+ +.+.
T Consensus       169 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~g~~~~~~l~ell~~sDv------V~l~~Plt~~T~  242 (345)
T 4g2n_A          169 MGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDI------FLIAAPGRPELK  242 (345)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHTTCEECSSHHHHHHTCSE------EEECSCCCGGGT
T ss_pred             cccCCCEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhhcCCeEeCCHHHHHhhCCE------EEEecCCCHHHH
Confidence            457789999999999986     666 8888877765311       1 1368899999999      5555554 3455


Q ss_pred             CCCCC------C------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266         123 PLVQL------D------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       123 ~l~~~------~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~  178 (180)
                      .+++.      +      |+.|| +++++||+++|++|+|+||++|||++|| |.++|||++|||++|+
T Consensus       243 ~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP-~~~~pL~~~~nvilTP  310 (345)
T 4g2n_A          243 GFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEP-AIDPRYRSLDNIFLTP  310 (345)
T ss_dssp             TCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT-SCCTTGGGCTTEEECC
T ss_pred             HHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCceEEEecCCCCCC-CCCchHHhCCCEEEcC
Confidence            66642      2      88887 9999999999999999999999999999 8999999999999997

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=99.63  E-value=2.8e-16  Score=134.01  Aligned_cols=114  Identities=16%  Similarity=0.212  Sum_probs=89.9

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc--------cCHHHHHHHHhcCCcceEEeecCCCCCC-CCCC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL--------LDQEALVEFLRDKKIGGAGLDVMIPEPL-PADH  122 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~--------vd~~al~~~L~~~~i~~~~lDv~~~ep~-~~~~  122 (180)
                      ..+.++|.|+||.+.+++     ++. |+.++...|..-        +...++.++++++|++      +.+.|+ +.+.
T Consensus       172 ~~l~gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV------~l~~Plt~~T~  245 (365)
T 4hy3_A          172 RLIAGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPRSMLEENGVEPASLEDVLTKSDFI------FVVAAVTSENK  245 (365)
T ss_dssp             CCSSSSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCHHHHHHTTCEECCHHHHHHSCSEE------EECSCSSCC--
T ss_pred             cccCCCEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCHHHHhhcCeeeCCHHHHHhcCCEE------EEcCcCCHHHH
Confidence            346789999999999986     777 888887776521        1122588999999994      445554 3455


Q ss_pred             CCCC------CC------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266         123 PLVQ------LD------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       123 ~l~~------~~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~  178 (180)
                      .+++      ++      |++|| +++++||.++|++|+|+ |++|||++||+|+++|||++|||++|+
T Consensus       246 ~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~EPl~~~~pL~~~~nvilTP  313 (365)
T 4hy3_A          246 RFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIV-AASDVYPEEPLPLDHPVRSLKGFIRSA  313 (365)
T ss_dssp             -CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE-EEESCCSSSSCCTTCGGGTCTTEEECC
T ss_pred             hhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCce-EEeeCCCCCCCCCCChhhcCCCEEECC
Confidence            5554      22      88887 99999999999999998 899999999999999999999999997

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=99.61  E-value=1.4e-16  Score=135.20  Aligned_cols=116  Identities=17%  Similarity=0.288  Sum_probs=91.4

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc--------c-CHHHHHHHHhcCCcceEEeecCCCCCCCCCC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL--------L-DQEALVEFLRDKKIGGAGLDVMIPEPLPADH  122 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~--------v-d~~al~~~L~~~~i~~~~lDv~~~ep~~~~~  122 (180)
                      ..+.++|.|+||.+.+++     ++. |..++...|..-        + ..+++.++++++|++...++.+     +.+.
T Consensus       156 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt-----~~t~  230 (352)
T 3gg9_A          156 RVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLN-----DETR  230 (352)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCCCS-----TTTT
T ss_pred             ccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCHHHHHhcCceEeCCHHHHHhhCCEEEEeccCc-----HHHH
Confidence            456789999999999986     555 888877766421        1 1126888999999955444443     3344


Q ss_pred             CCCC------CC------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266         123 PLVQ------LD------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       123 ~l~~------~~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~  178 (180)
                      .+++      ++      |+.|| ++++++|.++|++|+|+||++|||++||+|+++|||++|||++|+
T Consensus       231 ~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTP  299 (352)
T 3gg9_A          231 SIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTP  299 (352)
T ss_dssp             TCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSCCCSCCGGGGCTTEEECC
T ss_pred             HhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCCCCCCCCChhhcCCCEEECC
Confidence            4543      22      88887 999999999999999999999999999999999999999999997

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=99.59  E-value=6.2e-16  Score=130.25  Aligned_cols=116  Identities=24%  Similarity=0.276  Sum_probs=92.5

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc---------cCHHHHHHHHhcCCcceEEeecCCCCCCCCCC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL---------LDQEALVEFLRDKKIGGAGLDVMIPEPLPADH  122 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~---------vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~  122 (180)
                      ..+.++|.|+||.+.+++     ++. |+.++...|...         +...++.++++++|++..+++.+     +.+.
T Consensus       141 ~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t-----~~t~  215 (330)
T 4e5n_A          141 TGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQVACSELFASSDFILLALPLN-----ADTL  215 (330)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCS-----TTTT
T ss_pred             CccCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCceeCCHHHHHhhCCEEEEcCCCC-----HHHH
Confidence            357789999999999986     777 888887777541         11124888999999954444443     3445


Q ss_pred             CCCC------CC------ceeec-ccCHHHHHHHHHccccccccccCCCCC-------CCCCCCCcccCCcEEEcC
Q psy5266         123 PLVQ------LD------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPE-------PMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       123 ~l~~------~~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~E-------plp~~~pl~~~~nv~it~  178 (180)
                      .+++      ++      |+.|| +++++++.++|++|+|+||++|||++|       |+|.++|||++|||++|+
T Consensus       216 ~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~E~~~~~~~Pl~~~~~L~~~~nvilTP  291 (330)
T 4e5n_A          216 HLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTP  291 (330)
T ss_dssp             TCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCGGGCTTCTTCCSSCCHHHHTCSSEEECS
T ss_pred             HHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCccEEEecccccccccccCCCCCCCchHHcCCCEEECC
Confidence            5554      22      88887 999999999999999999999999999       999999999999999997

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=99.58  E-value=3.5e-16  Score=133.34  Aligned_cols=115  Identities=23%  Similarity=0.386  Sum_probs=89.7

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcE-EEecCCCCc----------cCHHHHHHHHhcCCcceEEeecCCCCCC-C
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAI-LINTSRGGL----------LDQEALVEFLRDKKIGGAGLDVMIPEPL-P  119 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~-lvn~~Rg~~----------vd~~al~~~L~~~~i~~~~lDv~~~ep~-~  119 (180)
                      ..+.++|.|+||.+.+++     ++. |+. ++...|...          ....++.++++++|++      +.+.|+ +
T Consensus       160 ~~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV------~l~~P~t~  233 (364)
T 2j6i_A          160 YDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIV------TVNAPLHA  233 (364)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEE------EECCCCST
T ss_pred             ccCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEE------EECCCCCh
Confidence            357899999999999986     665 774 665555421          1113588899999994      445554 2


Q ss_pred             CCCCCCC------CC------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccC--C---cEEEcC
Q psy5266         120 ADHPLVQ------LD------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQL--D---NCEIRG  178 (180)
Q Consensus       120 ~~~~l~~------~~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~--~---nv~it~  178 (180)
                      .+..+++      ++      |+.|| ++++++|.++|++|+|+||+||||++||+|+++|||++  |   ||++|+
T Consensus       234 ~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g~i~gA~LDVf~~EP~~~~~pL~~~~~~~~~nvilTP  310 (364)
T 2j6i_A          234 GTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTP  310 (364)
T ss_dssp             TTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCHHHHCCCTTSCCEEECC
T ss_pred             HHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHHcCCCcEEEEecCCCCCCCCCChHHhccCCccCcEEECC
Confidence            3445543      22      77787 89999999999999999999999999999999999999  9   999997

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=99.56  E-value=7.5e-16  Score=133.23  Aligned_cols=115  Identities=22%  Similarity=0.320  Sum_probs=89.8

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCC------ccCHHHHHHHHhcCCcceEEeecCCCCCC-CCCCCC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGG------LLDQEALVEFLRDKKIGGAGLDVMIPEPL-PADHPL  124 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~------~vd~~al~~~L~~~~i~~~~lDv~~~ep~-~~~~~l  124 (180)
                      ..+.++|.|+||.+.+++     ++. |..++...|..      .....++.++++++|+      |+.+.|+ +.+..+
T Consensus       152 ~el~gktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~~~~~~~~~sl~ell~~aDv------V~lhvPlt~~T~~l  225 (416)
T 3k5p_A          152 REVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQYGNVKPAASLDELLKTSDV------VSLHVPSSKSTSKL  225 (416)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCCBTTBEECSSHHHHHHHCSE------EEECCCC-----CC
T ss_pred             ccCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhcccCcEecCCHHHHHhhCCE------EEEeCCCCHHHhhh
Confidence            457789999999999986     555 77777665532      1223468999999999      5556665 445666


Q ss_pred             CCC------C------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCC----CCcccCCcEEEcC
Q psy5266         125 VQL------D------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPAD----HPLVQLDNCEIRG  178 (180)
Q Consensus       125 ~~~------~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~----~pl~~~~nv~it~  178 (180)
                      ++.      +      |+.|| +++++|+.++|++|+++||++|||+.||++++    +|||++|||++|+
T Consensus       226 i~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~EP~~~~~~~~~pL~~~~nvilTP  296 (416)
T 3k5p_A          226 ITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTP  296 (416)
T ss_dssp             BCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSCCSSTTSCCCCTTTTCTTEEECC
T ss_pred             cCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCCCCCCCCcccccchhHhcCCCEEECC
Confidence            652      2      88887 99999999999999999999999999998876    7999999999997

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=99.56  E-value=4e-16  Score=132.03  Aligned_cols=115  Identities=28%  Similarity=0.424  Sum_probs=90.3

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCC------ccCHHHHHHHHhcCCcceEEeecCCCCCC-CCCCCC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGG------LLDQEALVEFLRDKKIGGAGLDVMIPEPL-PADHPL  124 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~------~vd~~al~~~L~~~~i~~~~lDv~~~ep~-~~~~~l  124 (180)
                      ..+.++|.|+||.+.+++     ++. |+.++...|..      .+...++.++++++|+      |+.+.|+ +.+..+
T Consensus       144 ~~l~gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDv------V~l~~Plt~~t~~l  217 (343)
T 2yq5_A          144 NEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTVLKEADI------VSLHTPLFPSTENM  217 (343)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGGGTTTCEECCHHHHHHHCSE------EEECCCCCTTTTTC
T ss_pred             cccCCCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhhhhccccccCHHHHHhcCCE------EEEcCCCCHHHHHH
Confidence            346789999999999986     565 78777766642      1222368899999999      4445554 445666


Q ss_pred             CCC------C------ceeec-ccCHHHHHHHHHccccccccccCCCCCC--CCCC-----------CCcccCCcEEEcC
Q psy5266         125 VQL------D------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEP--MPAD-----------HPLVQLDNCEIRG  178 (180)
Q Consensus       125 ~~~------~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Ep--lp~~-----------~pl~~~~nv~it~  178 (180)
                      ++.      +      |+.|| +++++||.++|++|+++||++|||++||  +|.+           +|||++|||++|+
T Consensus       218 i~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~l~~~~~pL~~~~nvilTP  297 (343)
T 2yq5_A          218 IGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITP  297 (343)
T ss_dssp             BCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEESCCTTGGGTTTCCSCCTTTSCHHHHHHTTCTTEEECS
T ss_pred             hhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEecccccCCCccccccccccccccchhHHhcCCCEEECC
Confidence            652      2      88887 9999999999999999999999999999  5665           4899999999997

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=99.56  E-value=1.1e-15  Score=131.34  Aligned_cols=114  Identities=23%  Similarity=0.363  Sum_probs=90.1

Q ss_pred             CCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCcc----------CHHHHHHHHhcCCcceEEeecCCCCCC-CCC
Q psy5266          59 ALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGLL----------DQEALVEFLRDKKIGGAGLDVMIPEPL-PAD  121 (180)
Q Consensus        59 pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~v----------d~~al~~~L~~~~i~~~~lDv~~~ep~-~~~  121 (180)
                      .+.++|.|+||.+.+++     ++. |+.++...|...-          ...++.++++++|+      |+.+.|+ +.+
T Consensus       188 ~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~ell~~aDv------V~l~~Plt~~t  261 (393)
T 2nac_A          188 DLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDV------VTLNCPLHPET  261 (393)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSE------EEECSCCCTTT
T ss_pred             cCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHHHhcCCE------EEEecCCchHH
Confidence            57789999999999986     666 7777766654210          01257889999999      4445554 344


Q ss_pred             CCCCC------CC------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266         122 HPLVQ------LD------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       122 ~~l~~------~~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~  178 (180)
                      ..+++      ++      |+.|| +++++++.++|++|+|+||++|||++||+|.++|||++|||++|+
T Consensus       262 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~pL~~~~nvilTP  331 (393)
T 2nac_A          262 EHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTP  331 (393)
T ss_dssp             TTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCC
T ss_pred             HHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCeeEEEEEecCCCCCCCCChhHcCCCEEECC
Confidence            55553      22      77777 899999999999999999999999999999999999999999997

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=99.55  E-value=4.6e-16  Score=131.57  Aligned_cols=115  Identities=23%  Similarity=0.345  Sum_probs=72.0

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc-----cCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL-----LDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQ  126 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~-----vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~  126 (180)
                      ..+.++|.|+||.+.+++     ++. |..++...|..-     ....++.++++++|++..+++..     +.+..+++
T Consensus       167 ~~l~gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~sl~ell~~aDvVil~vP~t-----~~t~~li~  241 (340)
T 4dgs_A          167 HSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAAS-----AATQNIVD  241 (340)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCTTSCCEECSSHHHHHHTCSEEEECC---------------C
T ss_pred             ccccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCcccccCceecCCHHHHHhcCCEEEEeCCCC-----HHHHHHhh
Confidence            457789999999999986     555 777776655421     11346889999999954444333     34455553


Q ss_pred             ------CC------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266         127 ------LD------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       127 ------~~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~  178 (180)
                            ++      |+.|| +++++++.++|++|+|+||++|||++||+|+ +|||++|||++|+
T Consensus       242 ~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~EP~~~-~~L~~~~nvilTP  305 (340)
T 4dgs_A          242 ASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIR-SEFHTTPNTVLMP  305 (340)
T ss_dssp             HHHHHHTTTTCEEEECSCC--------------CCSSEEEESCCSSSSSCC-SHHHHSSSEEECS
T ss_pred             HHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcCCCCCCc-cchhhCCCEEEcC
Confidence                  11      88887 9999999999999999999999999999876 6999999999997

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=99.51  E-value=2.4e-15  Score=129.82  Aligned_cols=116  Identities=21%  Similarity=0.330  Sum_probs=84.3

Q ss_pred             ccCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCC------ccCHHHHHHHHhcCCcceEEeecCCCCCC-CCCCC
Q psy5266          57 TCALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGG------LLDQEALVEFLRDKKIGGAGLDVMIPEPL-PADHP  123 (180)
Q Consensus        57 h~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~------~vd~~al~~~L~~~~i~~~~lDv~~~ep~-~~~~~  123 (180)
                      ...+.++|.|+||.+.+++     ++. |..++...|..      +....++.++++++|+      |+.+.|+ +.+..
T Consensus       140 ~~el~gktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDv------V~l~~P~t~~t~~  213 (404)
T 1sc6_A          140 SFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDV------VSLHVPENPSTKN  213 (404)
T ss_dssp             CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHHHCSE------EEECCCSSTTTTT
T ss_pred             ccccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhccCCceecCCHHHHHhcCCE------EEEccCCChHHHH
Confidence            3467899999999999986     554 77776655521      1112368899999999      5666665 45666


Q ss_pred             CCCC------C------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCC----CCCcccCCcEEEcC
Q psy5266         124 LVQL------D------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPA----DHPLVQLDNCEIRG  178 (180)
Q Consensus       124 l~~~------~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~----~~pl~~~~nv~it~  178 (180)
                      +++.      +      |+.|| +++++++.++|++|+++||++|||+.||++.    ++|||++|||++|+
T Consensus       214 li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gA~lDVf~~EP~~~~~~~~~pL~~~~nvilTP  285 (404)
T 1sc6_A          214 MMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTP  285 (404)
T ss_dssp             CBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEEC
T ss_pred             HhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcCCccEEEEeecCCCCCCccccccchhhcCCCEEECC
Confidence            7652      1      78887 9999999999999999999999999999875    57999999999997

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=99.50  E-value=3e-15  Score=126.14  Aligned_cols=115  Identities=20%  Similarity=0.228  Sum_probs=86.7

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc------cCHH-HHHHHHhcCCcceEEeecCCCCCC-CCCCC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL------LDQE-ALVEFLRDKKIGGAGLDVMIPEPL-PADHP  123 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~------vd~~-al~~~L~~~~i~~~~lDv~~~ep~-~~~~~  123 (180)
                      ..+.++|.|+||.+.+++     ++. |+.++...|..-      +... ++.++++++|++..      +.|. +.+..
T Consensus       142 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvV~l------~~p~~~~t~~  215 (333)
T 1j4a_A          142 REVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISL------HVPDVPANVH  215 (333)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHTTCBCSCHHHHHHHCSEEEE------CSCCCGGGTT
T ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchhHHhhCeecCCHHHHHhhCCEEEE------cCCCcHHHHH
Confidence            356788999999999987     454 777766655421      1111 57888999999544      4454 23445


Q ss_pred             CCC------CC------ceeec-ccCHHHHHHHHHccccccccccCCCCCC--CCCCC-----------CcccCCcEEEc
Q psy5266         124 LVQ------LD------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEP--MPADH-----------PLVQLDNCEIR  177 (180)
Q Consensus       124 l~~------~~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Ep--lp~~~-----------pl~~~~nv~it  177 (180)
                      +++      ++      |+.|| ++++++|.++|++|+|+||++|||++||  +|+++           |||++|||++|
T Consensus       216 li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~l~~~~~~~~~~~p~~~~L~~~~nvilT  295 (333)
T 1j4a_A          216 MINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVT  295 (333)
T ss_dssp             CBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEEC
T ss_pred             HHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCccccccccccCCccchhhHHhCCCEEEC
Confidence            553      11      77777 8999999999999999999999999999  56654           69999999999


Q ss_pred             C
Q psy5266         178 G  178 (180)
Q Consensus       178 ~  178 (180)
                      +
T Consensus       296 P  296 (333)
T 1j4a_A          296 P  296 (333)
T ss_dssp             S
T ss_pred             C
Confidence            7

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=99.49  E-value=8.2e-15  Score=122.17  Aligned_cols=115  Identities=29%  Similarity=0.419  Sum_probs=89.7

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc--------cCHHHHHHHHhcCCcceEEeecCCCCCC-CCCC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL--------LDQEALVEFLRDKKIGGAGLDVMIPEPL-PADH  122 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~--------vd~~al~~~L~~~~i~~~~lDv~~~ep~-~~~~  122 (180)
                      ..+.++|.|+||.+.+++     ++. |..++...|..-        +...++.++++++|++.      .+.|. +.+.
T Consensus       138 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~------l~~p~~~~t~  211 (307)
T 1wwk_A          138 IELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNEERAKEVNGKFVDLETLLKESDVVT------IHVPLVESTY  211 (307)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEE------ECCCCSTTTT
T ss_pred             cccCCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCChhhHhhcCccccCHHHHHhhCCEEE------EecCCChHHh
Confidence            457789999999999996     554 777776665431        11124778899999944      44454 3345


Q ss_pred             CCCC------CC------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266         123 PLVQ------LD------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       123 ~l~~------~~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~  178 (180)
                      .+++      ++      |+.+| +++++++.++|++|+++||++||+++||+|+++|||++|||++|+
T Consensus       212 ~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~L~~~~nviltP  280 (307)
T 1wwk_A          212 HLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTP  280 (307)
T ss_dssp             TCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECS
T ss_pred             hhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEecCCCCCCCCCChHHhCCCEEECC
Confidence            5554      11      77777 899999999999999999999999999999999999999999997

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=99.49  E-value=1.1e-14  Score=120.53  Aligned_cols=113  Identities=15%  Similarity=0.157  Sum_probs=88.4

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc----c-CHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL----L-DQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQ  126 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~----v-d~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~  126 (180)
                      ..+.++|.|+||.+.+++     ++. |..++...|..-    + ..+++.++++++|++...++.+     +.+..+++
T Consensus       118 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t-----~~t~~li~  192 (290)
T 3gvx_A          118 TLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNVDVISESPADLFRQSDFVLIAIPLT-----DKTRGMVN  192 (290)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTCSEECSSHHHHHHHCSEEEECCCCC-----TTTTTCBS
T ss_pred             eeeecchheeeccCchhHHHHHHHHhhCcEEEEEeccccccccccccCChHHHhhccCeEEEEeecc-----ccchhhhh
Confidence            357789999999999986     666 777777666431    1 1237889999999955444443     33444543


Q ss_pred             ------CC------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266         127 ------LD------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       127 ------~~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~  178 (180)
                            ++      |+.|| +++++++.++|++|++++|++|||++||+   +|||++|||++|+
T Consensus       193 ~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~---~pL~~~~nvilTP  254 (290)
T 3gvx_A          193 SRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPE---ITETNLRNAILSP  254 (290)
T ss_dssp             HHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTS---CCSCCCSSEEECC
T ss_pred             HHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccCCcc---cchhhhhhhhcCc
Confidence                  22      88887 99999999999999999999999999997   9999999999997

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=99.47  E-value=6.2e-15  Score=122.77  Aligned_cols=115  Identities=18%  Similarity=0.219  Sum_probs=89.6

Q ss_pred             CCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCC----ccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCC--
Q psy5266          59 ALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGG----LLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQ--  126 (180)
Q Consensus        59 pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~----~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~--  126 (180)
                      .+.++|.|+||.+.+++     ++. |..++...|..    .....++.++++++|++..+++..     +.+..+++  
T Consensus       121 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~~l~ell~~aDvV~l~~P~~-----~~t~~~i~~~  195 (303)
T 1qp8_A          121 LIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLN-----KHTRGLVKYQ  195 (303)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCSSSCCBSCSHHHHTTCSEEEECCCCS-----TTTTTCBCHH
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCccccCcccCCCHHHHHhhCCEEEEeCcCc-----hHHHHHhCHH
Confidence            57789999999999986     554 77776666532    222346788999999955444443     23445554  


Q ss_pred             ----CC------ceeec-ccCHHHHHHHHHccccccccccCC-CCCCCCCCCCcccCCcEEEcC
Q psy5266         127 ----LD------NCGNG-LLDQEALVEFLRDKKIGGAGLDVM-IPEPMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       127 ----~~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~-~~Eplp~~~pl~~~~nv~it~  178 (180)
                          ++      |+.|| +++++++.++|++|+++||++||| ++||+|+++|||++|||++|+
T Consensus       196 ~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~~~~ep~~~~~~L~~~~nviltP  259 (303)
T 1qp8_A          196 HLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATP  259 (303)
T ss_dssp             HHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEEECC
T ss_pred             HHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccCCCCCCCCCCChhhcCCCEEECC
Confidence                22      77777 899999999999999999999999 889999999999999999997

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=99.47  E-value=5.1e-15  Score=124.58  Aligned_cols=114  Identities=28%  Similarity=0.399  Sum_probs=86.4

Q ss_pred             CCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCC------ccCHHHHHHHHhcCCcceEEeecCCCCCC-CCCCCCC
Q psy5266          59 ALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGG------LLDQEALVEFLRDKKIGGAGLDVMIPEPL-PADHPLV  125 (180)
Q Consensus        59 pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~------~vd~~al~~~L~~~~i~~~~lDv~~~ep~-~~~~~l~  125 (180)
                      .+.++|.|+||.+.+++     ++. |+.++...|..      .+...++.++++++|+      |+.+.|+ +.+..++
T Consensus       143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDv------V~~~~p~t~~t~~li  216 (331)
T 1xdw_A          143 EVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKGIEDYCTQVSLDEVLEKSDI------ITIHAPYIKENGAVV  216 (331)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSCTTTCEECCHHHHHHHCSE------EEECCCCCTTTCCSB
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHHHHhccccCCHHHHHhhCCE------EEEecCCchHHHHHh
Confidence            46788999999999987     454 77666555432      1222368889999999      4445554 3455555


Q ss_pred             C------CC------ceeec-ccCHHHHHHHHHccccccccccCCCCCCC--CCC-------C----CcccC-CcEEEcC
Q psy5266         126 Q------LD------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPM--PAD-------H----PLVQL-DNCEIRG  178 (180)
Q Consensus       126 ~------~~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Epl--p~~-------~----pl~~~-~nv~it~  178 (180)
                      +      ++      |+.|| ++++++|.++|++|+|+||++|||++||+  |++       +    |||++ |||++|+
T Consensus       217 ~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~~nvilTP  296 (331)
T 1xdw_A          217 TRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITP  296 (331)
T ss_dssp             CHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTGGGTTTCCCTTSCCSSHHHHHHHHTTTTEEECC
T ss_pred             CHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCceEEEEecCCCCCCcccccccccccCccchHHHHhCCCCEEEcC
Confidence            4      22      77787 99999999999999999999999999994  333       3    79999 9999997

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=99.45  E-value=2.4e-15  Score=132.54  Aligned_cols=114  Identities=14%  Similarity=0.160  Sum_probs=94.0

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCc---cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGS---KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL   82 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~l   82 (180)
                      .|+||+.     +.||+++..||++.....   .......++++++++||+|++|+    .|.++|+.+.+++||+|+++
T Consensus       285 ~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~~~l~ell~~aDiVi~~~----~t~~lI~~~~l~~MK~gAil  360 (494)
T 3d64_A          285 YGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTMEYAADKADIFVTAT----GNYHVINHDHMKAMRHNAIV  360 (494)
T ss_dssp             CSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECS----SSSCSBCHHHHHHCCTTEEE
T ss_pred             cCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEeCCHHHHHhcCCEEEECC----CcccccCHHHHhhCCCCcEE
Confidence            6778875     468899999998875321   11235679999999999999997    79999999999999999999


Q ss_pred             EecCCCCc-cCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCC--Cceeec
Q psy5266          83 INTSRGGL-LDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQL--DNCGNG  133 (180)
Q Consensus        83 vn~~Rg~~-vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~--~Nv~~g  133 (180)
                      ||++||.+ ||+++| ++|++++|. .++|   .+|++.+++++.+  +|++.+
T Consensus       361 INvgrg~veID~~aL-~AL~~g~I~-~~~D---v~plp~~~pL~~l~~~nvv~t  409 (494)
T 3d64_A          361 CNIGHFDSEIDVAST-RQYQWENIK-PQVD---HIIFPDGKRVILLAEGRLVNL  409 (494)
T ss_dssp             EECSSSSCSBCCGGG-TTSEEEEEE-TTEE---EEECTTSCEEEEEGGGSBHHH
T ss_pred             EEcCCCcchhchHHH-HhhhcCccc-eeEE---EEECCCCCchhhcCCCCEEEE
Confidence            99999999 699999 899999986 4444   4576778899888  998874

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=99.45  E-value=6.1e-15  Score=129.49  Aligned_cols=115  Identities=14%  Similarity=0.157  Sum_probs=96.3

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCC---ccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGG---SKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL   82 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~l   82 (180)
                      .|+||+.     +.||+++..||++....   ....+...++++++++||+|++|.    .|.++|+.+.+++||+|+++
T Consensus       265 ~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~~~l~ell~~aDiVi~~~----~t~~lI~~~~l~~MK~gail  340 (479)
T 1v8b_A          265 YGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCT----GNVDVIKLEHLLKMKNNAVV  340 (479)
T ss_dssp             CSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECC----SSSSSBCHHHHTTCCTTCEE
T ss_pred             eCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEecCHHHHHhcCCEEEECC----ChhhhcCHHHHhhcCCCcEE
Confidence            6777875     46789999999887531   112235679999999999999994    89999999999999999999


Q ss_pred             EecCCCCc-cCHHHHHH--HHhcCCcceEEeecCCCCCCCCCCCCCCC--Cceeec
Q psy5266          83 INTSRGGL-LDQEALVE--FLRDKKIGGAGLDVMIPEPLPADHPLVQL--DNCGNG  133 (180)
Q Consensus        83 vn~~Rg~~-vd~~al~~--~L~~~~i~~~~lDv~~~ep~~~~~~l~~~--~Nv~~g  133 (180)
                      +|++|+.+ ||+++|.+  +|+++.|. +++|++   |++.+++++.+  +|++.+
T Consensus       341 iNvgrg~~EId~~aL~~~~AL~~g~I~-a~lDv~---plp~~~~l~~l~~~nvv~t  392 (479)
T 1v8b_A          341 GNIGHFDDEIQVNELFNYKGIHIENVK-PQVDRI---TLPNGNKIIVLARGRLLNL  392 (479)
T ss_dssp             EECSSTTTSBCHHHHHTSTTCEEEEEE-TTEEEE---ECTTSCEEEEEGGGSBHHH
T ss_pred             EEeCCCCccccchhhhccccceeeeEe-eeEEEE---ECCCCCeeeEecCCCEEEE
Confidence            99999999 99999999  99999997 889998   34457888887  898774

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=99.45  E-value=3.2e-14  Score=118.82  Aligned_cols=114  Identities=33%  Similarity=0.461  Sum_probs=88.1

Q ss_pred             CCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc---cCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCC---
Q psy5266          59 ALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL---LDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQ---  126 (180)
Q Consensus        59 pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~---vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~---  126 (180)
                      .+.++|.|+||.+.+++     ++. |..++...|..-   +...++.++++++|++..+++..     +.+..+++   
T Consensus       141 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~l~ell~~aDvV~l~~p~~-----~~t~~li~~~~  215 (311)
T 2cuk_A          141 DLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLPYPFLSLEELLKEADVVSLHTPLT-----PETHRLLNRER  215 (311)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSSSCBCCHHHHHHHCSEEEECCCCC-----TTTTTCBCHHH
T ss_pred             CCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccccccCCHHHHHhhCCEEEEeCCCC-----hHHHhhcCHHH
Confidence            56788999999999987     454 766666655421   33446888999999955444433     23344443   


Q ss_pred             ---CC------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266         127 ---LD------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       127 ---~~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~  178 (180)
                         ++      |+.+| +++++++.++|+ |+++|+++|||++||++.++|||++|||++|+
T Consensus       216 l~~mk~ga~lin~srg~~vd~~aL~~aL~-g~i~ga~lDv~~~eP~~~~~~L~~~~nviltP  276 (311)
T 2cuk_A          216 LFAMKRGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNAVITP  276 (311)
T ss_dssp             HTTSCTTCEEEECSCGGGBCHHHHHHHHT-TTSSEEEESSCSSSSCCTTSGGGGCTTEEECC
T ss_pred             HhhCCCCcEEEECCCCCccCHHHHHHHHh-CcCCEEEEeeCCCCCCCCCChhhhCCCEEECC
Confidence               22      77776 899999999999 99999999999999999999999999999997

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=99.44  E-value=5e-15  Score=124.79  Aligned_cols=115  Identities=18%  Similarity=0.274  Sum_probs=86.7

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCC------ccCHHHHHHHHhcCCcceEEeecCCCCCC-CCCCCC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGG------LLDQEALVEFLRDKKIGGAGLDVMIPEPL-PADHPL  124 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~------~vd~~al~~~L~~~~i~~~~lDv~~~ep~-~~~~~l  124 (180)
                      ..+.++|.|+||.+.+++     ++. |+.++...|..      .+...++.++++++|+      |+.+.|+ +.+..+
T Consensus       141 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDv------V~~~~P~~~~t~~l  214 (333)
T 1dxy_A          141 KELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDV------IDLHVPGIEQNTHI  214 (333)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSCCTTCEECCHHHHHHHCSE------EEECCCCCGGGTTS
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchhhHhccccCCHHHHHhcCCE------EEEcCCCchhHHHH
Confidence            457789999999999987     554 77776555432      1122368889999999      4445554 234555


Q ss_pred             CC------CC------ceeec-ccCHHHHHHHHHccccccccccCCCCCCC--CCC-----------CCcccCCcEEEcC
Q psy5266         125 VQ------LD------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPM--PAD-----------HPLVQLDNCEIRG  178 (180)
Q Consensus       125 ~~------~~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Epl--p~~-----------~pl~~~~nv~it~  178 (180)
                      ++      ++      |+.|| ++++++|.++|++|+|+||++|||++||+  |++           +|||++|||++|+
T Consensus       215 i~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~pL~~~~nvi~TP  294 (333)
T 1dxy_A          215 INEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSP  294 (333)
T ss_dssp             BCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECS
T ss_pred             hCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCccEEEEecCCCCCCcccccccccccCccchhHHhcCCCEEECC
Confidence            54      22      77787 99999999999999999999999999983  221           5899999999997

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=99.43  E-value=2.6e-14  Score=120.57  Aligned_cols=115  Identities=25%  Similarity=0.308  Sum_probs=88.6

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCcc--------CHHHHHHHHhcCCcceEEeecCCCCCCCCCCC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGLL--------DQEALVEFLRDKKIGGAGLDVMIPEPLPADHP  123 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~v--------d~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~  123 (180)
                      ..+.++|.|+||.+.+++     ++. |..++...|..--        ...++.++++++|++..+++..     +.+..
T Consensus       161 ~~l~g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t-----~~t~~  235 (335)
T 2g76_A          161 TELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLL-----PSTTG  235 (335)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCHHHHHHTTCEECCHHHHGGGCSEEEECCCCC-----TTTTT
T ss_pred             cCCCcCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhhhhhcCceeCCHHHHHhcCCEEEEecCCC-----HHHHH
Confidence            457789999999999986     565 8777766664211        1125778999999954444443     23444


Q ss_pred             CCC------CC------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266         124 LVQ------LD------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       124 l~~------~~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~  178 (180)
                      +++      ++      |+.|| +++++++.++|++|+++||++|||+.|| ++++|||++|||++|+
T Consensus       236 li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~gA~lDV~~~EP-~~~~~L~~~~nvilTP  302 (335)
T 2g76_A          236 LLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALVDHENVISCP  302 (335)
T ss_dssp             SBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSS-CSCCHHHHSTTEEECS
T ss_pred             hhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCccEEEEeecCCCC-CCCchHHhCCCEEECC
Confidence            553      22      77777 8999999999999999999999999999 6779999999999997

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=99.40  E-value=2.2e-13  Score=115.38  Aligned_cols=114  Identities=25%  Similarity=0.327  Sum_probs=88.2

Q ss_pred             CCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc--cC-------HHHHHHHHhcCCcceEEeecCCCCCC-CCCC
Q psy5266          59 ALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL--LD-------QEALVEFLRDKKIGGAGLDVMIPEPL-PADH  122 (180)
Q Consensus        59 pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~--vd-------~~al~~~L~~~~i~~~~lDv~~~ep~-~~~~  122 (180)
                      .+.++|.|+||.+.+++     ++. |..++...|..-  ..       ..++.++++++|+      |+.+.|+ +.+.
T Consensus       165 ~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDv------V~l~~P~t~~t~  238 (347)
T 1mx3_A          165 RIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDC------VTLHCGLNEHNH  238 (347)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSE------EEECCCCCTTCT
T ss_pred             CCCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhhHhhcCCeecCCHHHHHhcCCE------EEEcCCCCHHHH
Confidence            57789999999999987     555 777776655321  00       1257889999999      5555554 3345


Q ss_pred             CCCC------CC------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCC-CCCCcccCCcEEEcC
Q psy5266         123 PLVQ------LD------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMP-ADHPLVQLDNCEIRG  178 (180)
Q Consensus       123 ~l~~------~~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp-~~~pl~~~~nv~it~  178 (180)
                      .+++      ++      |+.|| +++++++.++|++|+++||++||++.||++ .++|||.+|||++|+
T Consensus       239 ~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~~L~~~~nvi~tP  308 (347)
T 1mx3_A          239 HLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTP  308 (347)
T ss_dssp             TSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECS
T ss_pred             HHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCcEEEEeecccCCCCCCCchHHhCCCEEEEc
Confidence            5553      22      77777 899999999999999999999999999987 479999999999997

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=99.40  E-value=1.7e-13  Score=114.84  Aligned_cols=114  Identities=19%  Similarity=0.204  Sum_probs=87.4

Q ss_pred             CCCCCCcceeCHhHHhc-----cCC-CcEEEecCC-CCcc--------C-HHHHHHHHhcCCcceEEeecCCCCCCCCCC
Q psy5266          59 ALTKDTEQLIGRKQFSL-----MKP-TAILINTSR-GGLL--------D-QEALVEFLRDKKIGGAGLDVMIPEPLPADH  122 (180)
Q Consensus        59 pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~R-g~~v--------d-~~al~~~L~~~~i~~~~lDv~~~ep~~~~~  122 (180)
                      .+.++|.|+||.+.+++     ++. |..++...| ..--        . .+++.++++++|++..+++..     +.+.
T Consensus       143 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~~p~~-----~~t~  217 (320)
T 1gdh_A          143 KLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPST-----PETR  217 (320)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCC-----TTTT
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChhhhhhcCcEEcCCHHHHHhhCCEEEEeccCc-----hHHH
Confidence            56789999999999987     555 777776666 3210        0 115778899999955544443     2234


Q ss_pred             CCCC------CC------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266         123 PLVQ------LD------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       123 ~l~~------~~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~  178 (180)
                      .+++      ++      |+.+| +++++++.++|++|+++||++||++.|| +.++|||++|||++|+
T Consensus       218 ~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~eP-~~~~~L~~~~nviltP  285 (320)
T 1gdh_A          218 YFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFLFP  285 (320)
T ss_dssp             TCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT-SCCTTGGGCTTEEECS
T ss_pred             hhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCC-CCCChhhhCCCEEECC
Confidence            4442      21      77776 8999999999999999999999999999 8899999999999997

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=99.36  E-value=1.1e-13  Score=115.59  Aligned_cols=115  Identities=15%  Similarity=0.268  Sum_probs=87.2

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCcc--------CHHHHHHHHhcCCcceEEeecCCCCCCCCCCC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGLL--------DQEALVEFLRDKKIGGAGLDVMIPEPLPADHP  123 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~v--------d~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~  123 (180)
                      ..+.++|.|+||.+.+++     ++. |..++...|..--        ...++.++++++|++..+++..     +.+..
T Consensus       138 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvVvl~~P~~-----~~t~~  212 (313)
T 2ekl_A          138 LELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREKAEKINAKAVSLEELLKNSDVISLHVTVS-----KDAKP  212 (313)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCC-----TTSCC
T ss_pred             CCCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchhHHHhcCceecCHHHHHhhCCEEEEeccCC-----hHHHH
Confidence            457789999999999987     554 7777766654311        0125778899999954444433     23444


Q ss_pred             CCC------CC------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCC---CcccCCcEEEcC
Q psy5266         124 LVQ------LD------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADH---PLVQLDNCEIRG  178 (180)
Q Consensus       124 l~~------~~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~---pl~~~~nv~it~  178 (180)
                      +++      ++      |+.+| +++++++.++|++|+++||++||+++||++ ++   |||++|||++|+
T Consensus       213 li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~-~~~~~~L~~~~nviltP  282 (313)
T 2ekl_A          213 IIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPK-EEWELELLKHERVIVTT  282 (313)
T ss_dssp             SBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEEEEEESCCSSSSCC-SHHHHHHHHSTTEEECC
T ss_pred             hhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCcEEEEecCCCCCCC-CcccchHhhCCCEEECC
Confidence            553      11      77776 899999999999999999999999999988 56   999999999997

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=99.32  E-value=5.2e-13  Score=112.52  Aligned_cols=114  Identities=26%  Similarity=0.414  Sum_probs=86.4

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCC-----ccCHHHHHHHHhcCCcceEEeecCCCCCC-CCCCCCC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGG-----LLDQEALVEFLRDKKIGGAGLDVMIPEPL-PADHPLV  125 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~-----~vd~~al~~~L~~~~i~~~~lDv~~~ep~-~~~~~l~  125 (180)
                      ..+.++|.|+||.+.+++     ++. |..++...|..     .....++.++++++|+      |+.+.|. +.+..++
T Consensus       160 ~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~g~~~~~~l~ell~~aDv------Vil~vP~~~~t~~li  233 (333)
T 3ba1_A          160 TKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNTNYTYYGSVVELASNSDI------LVVACPLTPETTHII  233 (333)
T ss_dssp             CCCTTCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTCCSEEESCHHHHHHTCSE------EEECSCCCGGGTTCB
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhccCceecCCHHHHHhcCCE------EEEecCCChHHHHHh
Confidence            457789999999999986     444 65555444432     1112357889999999      4555554 2345555


Q ss_pred             CC-------C-----ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266         126 QL-------D-----NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       126 ~~-------~-----Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~  178 (180)
                      +.       +     |+.+| .++++++.++|++|+++++++|||.+||++. +|||++|||++|+
T Consensus       234 ~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~-~~L~~~~nviltP  298 (333)
T 3ba1_A          234 NREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVP-EKLFGLENVVLLP  298 (333)
T ss_dssp             CHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCTTTTCCC-GGGGGCTTEEECS
T ss_pred             hHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCCCCCCCc-chhhcCCCEEECC
Confidence            31       1     77777 8999999999999999999999999999876 9999999999997

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=99.30  E-value=1.6e-13  Score=117.49  Aligned_cols=118  Identities=17%  Similarity=0.091  Sum_probs=87.7

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCC-----CccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRG-----GLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQ  126 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg-----~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~  126 (180)
                      ..+.++|.|+||.+.+++     ++. |..++...|.     ......++.++++++|++...++.+...+ ..+..+++
T Consensus       115 ~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~g~-~~T~~li~  193 (381)
T 3oet_A          115 FSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARGDEGDFRTLDELVQEADVLTFHTPLYKDGP-YKTLHLAD  193 (381)
T ss_dssp             CCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHTTCCSCBCCHHHHHHHCSEEEECCCCCCSST-TCCTTSBC
T ss_pred             CccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHhccCcccCCHHHHHhhCCEEEEcCcCCcccc-ccchhhcC
Confidence            356688999999999986     555 7777766542     12233468899999999555554443211 11555665


Q ss_pred             CC------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266         127 LD------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       127 ~~------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~  178 (180)
                      ..            |+.|| +++++||.++|++|+++||++|||++||+|. +|||.++ +++|+
T Consensus       194 ~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e~EP~~~-~~L~~~~-~i~TP  256 (381)
T 3oet_A          194 ETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLN-VALLEAV-DIGTS  256 (381)
T ss_dssp             HHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSCC-HHHHHHS-SEECS
T ss_pred             HHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeeccccCCCCc-chhhhCC-EEECC
Confidence            22            88887 9999999999999999999999999999764 6799885 88887

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=99.26  E-value=3.5e-12  Score=107.11  Aligned_cols=116  Identities=30%  Similarity=0.471  Sum_probs=85.5

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCC--c-------cCHHHHHHHHhcCCcceEEeecCCCCCC-CCC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGG--L-------LDQEALVEFLRDKKIGGAGLDVMIPEPL-PAD  121 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~--~-------vd~~al~~~L~~~~i~~~~lDv~~~ep~-~~~  121 (180)
                      ..+.++|.|+||.+.+++     ++. |..++...|..  .       +...++.++++++|++      +.+.|. +.+
T Consensus       151 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~e~l~~aDvV------i~~vp~~~~t  224 (330)
T 2gcg_A          151 YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFI------VVACSLTPAT  224 (330)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEECCHHHHHHHCSEE------EECCCCCTTT
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeCCHHHHHhhCCEE------EEeCCCChHH
Confidence            356788999999999886     444 65555444321  1       0011577889999994      444443 233


Q ss_pred             CCCCC------C-C-----ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcCC
Q psy5266         122 HPLVQ------L-D-----NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRGG  179 (180)
Q Consensus       122 ~~l~~------~-~-----Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~~  179 (180)
                      ..+++      + +     |+.+| .++++++.++|++|+++|+++||+.+||+++++|||++|||++|+-
T Consensus       225 ~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~epl~~~~~l~~~~nvi~tPh  295 (330)
T 2gcg_A          225 EGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPH  295 (330)
T ss_dssp             TTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECCS
T ss_pred             HHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccEEEeCCCCCCCCCCCChhhcCCCEEECCC
Confidence            44543      1 1     66666 8999999999999999999999999999999999999999999873

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=99.22  E-value=3.8e-12  Score=107.70  Aligned_cols=115  Identities=21%  Similarity=0.284  Sum_probs=87.5

Q ss_pred             cCCCCCCcceeCHhHHhc-----cC-C-CcEEEecCCCCcc-C---------HHHHHHHHhcCCcceEEeecCCCCCCC-
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MK-P-TAILINTSRGGLL-D---------QEALVEFLRDKKIGGAGLDVMIPEPLP-  119 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk-~-g~~lvn~~Rg~~v-d---------~~al~~~L~~~~i~~~~lDv~~~ep~~-  119 (180)
                      ..+.++|.|+||.+.+++     ++ . |..++...|..-- +         ..++.++++++|+      |+.+.|.. 
T Consensus       159 ~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDv------Vil~vp~~~  232 (348)
T 2w2k_A          159 HNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDC------VSVSVPYMK  232 (348)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSE------EEECCCCSG
T ss_pred             cCCCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCE------EEEeCCCCh
Confidence            357789999999999986     55 5 8777766654211 0         1257788999999      55555542 


Q ss_pred             CCCCCCC------CC------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcCC
Q psy5266         120 ADHPLVQ------LD------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRGG  179 (180)
Q Consensus       120 ~~~~l~~------~~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~~  179 (180)
                      .+..+++      ++      |+.+| .++++++.++|++|+++||++|||.+|| +.++|||++|||++|+-
T Consensus       233 ~t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP-~~~~~L~~~~nviltPH  304 (348)
T 2w2k_A          233 LTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEP-QVSKELIEMKHVTLTTH  304 (348)
T ss_dssp             GGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTT-SCCHHHHTSSSEEECCS
T ss_pred             HHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCCC-CCCchhhcCCCEEEcCc
Confidence            2444553      11      77776 8999999999999999999999999998 77889999999999973

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=99.21  E-value=1.7e-12  Score=111.20  Aligned_cols=118  Identities=17%  Similarity=0.112  Sum_probs=85.9

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCC-----ccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGG-----LLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQ  126 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~-----~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~  126 (180)
                      ..+.++|.|+||.+.+++     ++. |..++...|..     -....++.++++++|++...++.....+. .+..+++
T Consensus       112 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~g~~-~T~~li~  190 (380)
T 2o4c_A          112 ADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAREPDGEFVSLERLLAEADVISLHTPLNRDGEH-PTRHLLD  190 (380)
T ss_dssp             CCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHHSTTSCCCCHHHHHHHCSEEEECCCCCSSSSS-CCTTSBC
T ss_pred             cccCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhhccCcccCCHHHHHHhCCEEEEeccCcccccc-chhhhcC
Confidence            356788999999999986     555 77766554421     11234588899999995555555433111 1455554


Q ss_pred             C------C------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266         127 L------D------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       127 ~------~------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~  178 (180)
                      .      +      |+.|| +++++++.++|++|++++|++|||++||+| ++|++.. ||++|+
T Consensus       191 ~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~~EP~~-~~~l~~~-nvi~TP  253 (380)
T 2o4c_A          191 EPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQA-DPELAAR-CLIATP  253 (380)
T ss_dssp             HHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSC-CHHHHTT-CSEECS
T ss_pred             HHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCceEEeeeeccCCCC-chhhccC-CEEEcc
Confidence            2      2      77777 899999999999999999999999999954 5788884 999997

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=99.21  E-value=1.2e-11  Score=104.11  Aligned_cols=115  Identities=23%  Similarity=0.330  Sum_probs=85.7

Q ss_pred             CCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCccC--------HHHHHHHHhcCCcceEEeecCCCCCCCCCCCC
Q psy5266          59 ALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGLLD--------QEALVEFLRDKKIGGAGLDVMIPEPLPADHPL  124 (180)
Q Consensus        59 pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~vd--------~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l  124 (180)
                      .+.++|.|+||.+.+++     ++. |..++...|..-.+        ..++.++++++|++..+++..     +.+..+
T Consensus       143 ~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~e~l~~aDiVil~vp~~-----~~t~~~  217 (333)
T 2d0i_A          143 SLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLT-----RDTYHI  217 (333)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCC-----TTTTTS
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchhhhhhcCceecCHHHHHhhCCEEEEcCCCC-----hHHHHH
Confidence            57789999999999986     555 77776665543111        114678899999954444333     234444


Q ss_pred             CC------C-C----ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCC-cEEEcCC
Q psy5266         125 VQ------L-D----NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLD-NCEIRGG  179 (180)
Q Consensus       125 ~~------~-~----Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~-nv~it~~  179 (180)
                      ++      + +    |+.+| .++++++.++|++|+++||++||+.+||+| ++|||++| ||++|+-
T Consensus       218 i~~~~~~~mk~gilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~-~~~L~~~~~nviltPh  284 (333)
T 2d0i_A          218 INEERVKKLEGKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVR-EHELFKYEWETVLTPH  284 (333)
T ss_dssp             BCHHHHHHTBTCEEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCSSSSCS-CCGGGGCTTTEEECCS
T ss_pred             hCHHHHhhCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEecCCCCCCCC-CchHHcCCCCEEEcCc
Confidence            43      1 2    55555 899999999999999999999999999988 89999999 9999973

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=99.18  E-value=9e-12  Score=104.78  Aligned_cols=113  Identities=28%  Similarity=0.409  Sum_probs=85.6

Q ss_pred             CCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCccC--------HHHHHHHHhcCCcceEEeecCCCCCCCC-CCC
Q psy5266          59 ALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGLLD--------QEALVEFLRDKKIGGAGLDVMIPEPLPA-DHP  123 (180)
Q Consensus        59 pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~vd--------~~al~~~L~~~~i~~~~lDv~~~ep~~~-~~~  123 (180)
                      .+..+|.|+||.+.+++     ++. |..++...|..--+        ..++.++++++|++      +.+.|... +..
T Consensus       147 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~~~l~~aDvV------il~vp~~~~t~~  220 (334)
T 2dbq_A          147 DVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKEEVERELNAEFKPLEDLLRESDFV------VLAVPLTRETYH  220 (334)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHCCEECCHHHHHHHCSEE------EECCCCCTTTTT
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcchhhHhhcCcccCCHHHHHhhCCEE------EECCCCChHHHH
Confidence            56788999999999986     444 66666665543111        12477889999994      44455422 344


Q ss_pred             CCC------C-C-----ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266         124 LVQ------L-D-----NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       124 l~~------~-~-----Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~  178 (180)
                      +++      + +     |+.+| .++++++.++|++|+++|+++||+.+|| +.++|||++|||++|+
T Consensus       221 ~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~EP-~~~~~L~~~~~vi~tP  287 (334)
T 2dbq_A          221 LINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEP-YYNEELFKLDNVVLTP  287 (334)
T ss_dssp             CBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSS-CCCHHHHHCTTEEECS
T ss_pred             hhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCCCCCC-CCCchhhcCCCEEECC
Confidence            543      1 1     66676 8999999999999999999999999999 8899999999999987

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=99.06  E-value=9.7e-11  Score=104.05  Aligned_cols=115  Identities=21%  Similarity=0.278  Sum_probs=86.4

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCccC--------HHHHHHHHhcCCcceEEeecCCCCCCCCCCC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGLLD--------QEALVEFLRDKKIGGAGLDVMIPEPLPADHP  123 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~vd--------~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~  123 (180)
                      ..+.++|.|+||.+.+++     ++. |..++...|..-..        ..++.++++++|++..+++...     .+..
T Consensus       138 ~~l~g~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~e~~~~aDvV~l~~P~~~-----~t~~  212 (529)
T 1ygy_A          138 TEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTP-----ETAG  212 (529)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHHHTCEECCHHHHHHHCSEEEECCCCST-----TTTT
T ss_pred             cccCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCcEEcCHHHHHhcCCEEEECCCCch-----HHHH
Confidence            457789999999999886     555 77777665532100        0147788999999555544431     3344


Q ss_pred             CCC------C-C-----ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266         124 LVQ------L-D-----NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       124 l~~------~-~-----Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~  178 (180)
                      +++      + +     |+.+| +++++++.++|++|+++||++||+..||+ .++|||++|||++|+
T Consensus       213 ~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~-~~~~L~~~~~vilTP  279 (529)
T 1ygy_A          213 LIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPC-TDSPLFELAQVVVTP  279 (529)
T ss_dssp             CBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSC-SCCGGGGCTTEEECS
T ss_pred             HhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCC-CCchHHhCCCEEEcc
Confidence            433      2 2     66666 89999999999999999999999999995 689999999999996

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=98.70  E-value=3.8e-09  Score=91.85  Aligned_cols=84  Identities=15%  Similarity=0.128  Sum_probs=67.1

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCc---cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGS---KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL   82 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~l   82 (180)
                      .|+||+.     +.||++++.++.+.....   ..-+...++++++++||||+.+.    .|.++|+.+.|++||+|+++
T Consensus       255 ~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~vv~LeElL~~ADIVv~at----gt~~lI~~e~l~~MK~GAIL  330 (464)
T 3n58_A          255 YGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVVTLDDAASTADIVVTTT----GNKDVITIDHMRKMKDMCIV  330 (464)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECCHHHHGGGCSEEEECC----SSSSSBCHHHHHHSCTTEEE
T ss_pred             cCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCceeccHHHHHhhCCEEEECC----CCccccCHHHHhcCCCCeEE
Confidence            6888885     468888888876543210   11235679999999999999863    58999999999999999999


Q ss_pred             EecCCCCc-cCHHHHHH
Q psy5266          83 INTSRGGL-LDQEALVE   98 (180)
Q Consensus        83 vn~~Rg~~-vd~~al~~   98 (180)
                      +|++|+.+ +|.++|.+
T Consensus       331 INvGRgdvEID~~aL~~  347 (464)
T 3n58_A          331 GNIGHFDNEIQVAALRN  347 (464)
T ss_dssp             EECSSSTTTBTCGGGTT
T ss_pred             EEcCCCCcccCHHHHHh
Confidence            99999997 89888864

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=98.63  E-value=1.5e-08  Score=87.95  Aligned_cols=85  Identities=16%  Similarity=0.207  Sum_probs=68.6

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCc---cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGS---KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL   82 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~l   82 (180)
                      .|.||+.     ..||+++..+|++.....   ..-+...++++++++||+|++    +..|.++|+.+.+++||+|+++
T Consensus       219 ~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~~sL~eal~~ADVVil----t~gt~~iI~~e~l~~MK~gAIV  294 (436)
T 3h9u_A          219 YGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLVEDVVEEAHIFVT----TTGNDDIITSEHFPRMRDDAIV  294 (436)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEE----CSSCSCSBCTTTGGGCCTTEEE
T ss_pred             eCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCeecCHHHHHhhCCEEEE----CCCCcCccCHHHHhhcCCCcEE
Confidence            5777774     357888888888754211   112356799999999999996    5689999999999999999999


Q ss_pred             EecCCCCc-cCHHHHHHH
Q psy5266          83 INTSRGGL-LDQEALVEF   99 (180)
Q Consensus        83 vn~~Rg~~-vd~~al~~~   99 (180)
                      +|++|+.. ||.++|.+.
T Consensus       295 INvgRg~vEID~~~L~~~  312 (436)
T 3h9u_A          295 CNIGHFDTEIQVAWLKAN  312 (436)
T ss_dssp             EECSSSGGGBCHHHHHHH
T ss_pred             EEeCCCCCccCHHHHHhh
Confidence            99999986 999988764

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=98.54  E-value=1.1e-09  Score=94.71  Aligned_cols=110  Identities=7%  Similarity=-0.017  Sum_probs=80.4

Q ss_pred             cCCcccc-----ce-eeeEEEec-cccccCCccceeeccCHHHHhccCCE-EEEccCCCCCCcceeCHhHHhccCCCcEE
Q psy5266          11 TGTPGQV-----HL-IVCVLIRY-HVDLTGGSKQVYLILVIRTRSAQSDF-IFVTCALTKDTEQLIGRKQFSLMKPTAIL   82 (180)
Q Consensus        11 ~G~iG~~-----~~-~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~~D~-v~~h~pl~~~T~glIg~~~i~~mk~g~~l   82 (180)
                      .|+||+.     +. ||++++++ |+....+.   ....+++++++.+|. .++ +|+ ++|.+ |+.+.|.+||. .++
T Consensus       220 ~G~VG~~vA~~l~~~~G~kVv~~sD~~g~~~~---~~gvdl~~L~~~~d~~~~l-~~l-~~t~~-i~~~~l~~mk~-dil  292 (419)
T 1gtm_A          220 YGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYN---PDGLNADEVLKWKNEHGSV-KDF-PGATN-ITNEELLELEV-DVL  292 (419)
T ss_dssp             CSHHHHHHHHHHHHTTCCEEEEEECSSCEEEE---EEEECHHHHHHHHHHHSSS-TTC-TTSEE-ECHHHHHHSCC-SEE
T ss_pred             CCHHHHHHHHHHHHhcCCEEEEEeCCCccccC---ccCCCHHHHHHHHHhcCEe-ecC-ccCee-eCHHHHHhCCC-CEE
Confidence            6788885     45 77777777 44321111   122367777775554 333 577 68888 89999999998 599


Q ss_pred             EecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCC-CCCCCCCceeec
Q psy5266          83 INTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPAD-HPLVQLDNCGNG  133 (180)
Q Consensus        83 vn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~-~~l~~~~Nv~~g  133 (180)
                      ||++||.++|+++ .++|+.+.|..++     +||++.. ++++.++|+..+
T Consensus       293 In~ArG~~Vde~a-~~aL~~~~I~~aA-----neP~t~~a~~ll~~~~V~it  338 (419)
T 1gtm_A          293 APAAIEEVITKKN-ADNIKAKIVAEVA-----NGPVTPEADEILFEKGILQI  338 (419)
T ss_dssp             EECSCSCCBCTTG-GGGCCCSEEECCS-----SSCBCHHHHHHHHHTTCEEE
T ss_pred             EECCCcccCCHHH-HHHhcCCEEEEee-----CCCCCcchHHHHhcCCEEEE
Confidence            9999999999999 5888888887776     7886433 688999999875

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=98.39  E-value=9.6e-08  Score=82.73  Aligned_cols=83  Identities=14%  Similarity=0.251  Sum_probs=65.3

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCC---ccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGG---SKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL   82 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~l   82 (180)
                      .|.||+.     +.||++++.+|.+....   ...-+...++++++++||+|+.+    ..|.++|+.+.|.+||+|+++
T Consensus       228 ~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v~~Leeal~~ADIVi~a----tgt~~lI~~e~l~~MK~gail  303 (435)
T 3gvp_A          228 YGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQVDIVITC----TGNKNVVTREHLDRMKNSCIV  303 (435)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEEC----SSCSCSBCHHHHHHSCTTEEE
T ss_pred             eCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEeccHHHHHhcCCEEEEC----CCCcccCCHHHHHhcCCCcEE
Confidence            5778875     36788888888764310   01123567999999999999994    578999999999999999999


Q ss_pred             EecCCCCc-cCHHHHH
Q psy5266          83 INTSRGGL-LDQEALV   97 (180)
Q Consensus        83 vn~~Rg~~-vd~~al~   97 (180)
                      +|++|+.. +|.+.+.
T Consensus       304 INvgrg~~EId~~~L~  319 (435)
T 3gvp_A          304 CNMGHSNTEIDVASLR  319 (435)
T ss_dssp             EECSSTTTTBTGGGGC
T ss_pred             EEecCCCccCCHHHHH
Confidence            99999986 7776654

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=98.36  E-value=2.2e-07  Score=76.40  Aligned_cols=75  Identities=9%  Similarity=0.060  Sum_probs=59.2

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCc------cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCC
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGS------KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPT   79 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g   79 (180)
                      .|+||+.     +.+|+++..||++.....      .......++++++++||+|++|+|+     ++++.+.+++||++
T Consensus       165 ~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-----~~i~~~~~~~mk~g  239 (300)
T 2rir_A          165 LGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPS-----MILNQTVLSSMTPK  239 (300)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSS-----CCBCHHHHTTSCTT
T ss_pred             ccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCCh-----hhhCHHHHHhCCCC
Confidence            6777774     357888999988764211      1122357899999999999999997     79999999999999


Q ss_pred             cEEEecCCCCc
Q psy5266          80 AILINTSRGGL   90 (180)
Q Consensus        80 ~~lvn~~Rg~~   90 (180)
                      +++||++|+..
T Consensus       240 ~~lin~a~g~~  250 (300)
T 2rir_A          240 TLILDLASRPG  250 (300)
T ss_dssp             CEEEECSSTTC
T ss_pred             CEEEEEeCCCC
Confidence            99999999753

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=98.33  E-value=3.1e-07  Score=75.38  Aligned_cols=75  Identities=9%  Similarity=-0.014  Sum_probs=58.8

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCc------cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCC
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGS------KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPT   79 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g   79 (180)
                      .|+||+.     +.+|+++..|+++.....      .......++++++++||+|++|+|+     ++++.+.+++||++
T Consensus       163 ~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-----~~i~~~~l~~mk~~  237 (293)
T 3d4o_A          163 LGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPA-----LVVTANVLAEMPSH  237 (293)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSS-----CCBCHHHHHHSCTT
T ss_pred             eCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCCh-----HHhCHHHHHhcCCC
Confidence            6777774     357888888888754210      0112346899999999999999996     79999999999999


Q ss_pred             cEEEecCCCCc
Q psy5266          80 AILINTSRGGL   90 (180)
Q Consensus        80 ~~lvn~~Rg~~   90 (180)
                      +++||++|+..
T Consensus       238 ~~lin~ar~~~  248 (293)
T 3d4o_A          238 TFVIDLASKPG  248 (293)
T ss_dssp             CEEEECSSTTC
T ss_pred             CEEEEecCCCC
Confidence            99999999753

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.32  E-value=7.8e-08  Score=84.76  Aligned_cols=113  Identities=12%  Similarity=0.095  Sum_probs=82.7

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCC----ccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGG----SKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAI   81 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~   81 (180)
                      .|.||+.     ..+|++++.+|++....    ..+ ....+++++++.+|+|+.|.+    |.++|+...++.||+|++
T Consensus       282 ~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~G-a~~~~l~e~l~~aDvVi~atg----t~~~i~~~~l~~mk~ggi  356 (494)
T 3ce6_A          282 YGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEG-FDVVTVEEAIGDADIVVTATG----NKDIIMLEHIKAMKDHAI  356 (494)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-CEECCHHHHGGGCSEEEECSS----SSCSBCHHHHHHSCTTCE
T ss_pred             cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-CEEecHHHHHhCCCEEEECCC----CHHHHHHHHHHhcCCCcE
Confidence            5777764     34678888888765431    111 235689999999999999964    667899999999999999


Q ss_pred             EEecCCCCc-cCHHHHHH-HHhcCCcceEEeecCCCCCCCCCCC--CCCCCcee
Q psy5266          82 LINTSRGGL-LDQEALVE-FLRDKKIGGAGLDVMIPEPLPADHP--LVQLDNCG  131 (180)
Q Consensus        82 lvn~~Rg~~-vd~~al~~-~L~~~~i~~~~lDv~~~ep~~~~~~--l~~~~Nv~  131 (180)
                      ++|++|+.. +|..+|.+ .++++.+. ..+|++..++.  .++  ++...|+.
T Consensus       357 lvnvG~~~~eId~~aL~~~aL~~~~I~-~~ldv~~~~~~--~~~l~LL~~grlv  407 (494)
T 3ce6_A          357 LGNIGHFDNEIDMAGLERSGATRVNVK-PQVDLWTFGDT--GRSIIVLSEGRLL  407 (494)
T ss_dssp             EEECSSSGGGBCHHHHHHTTCEEEEEE-TTEEEEECTTT--CCEEEEEGGGSCH
T ss_pred             EEEeCCCCCccCHHHHHHhhhccceEE-EEEEEeecCCc--chHHHHHhCCCEE
Confidence            999999998 89999887 77777775 56787654221  233  44455553

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=98.09  E-value=1.2e-07  Score=83.29  Aligned_cols=106  Identities=12%  Similarity=0.114  Sum_probs=79.6

Q ss_pred             CCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCcc---------CHHHHHHHHhcCCcceEEeecCCCCCCCCCCC
Q psy5266          59 ALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGLL---------DQEALVEFLRDKKIGGAGLDVMIPEPLPADHP  123 (180)
Q Consensus        59 pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~v---------d~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~  123 (180)
                      .+.++|.++||.+.+++     ++. |+.++-..|...-         ...++.++++++|++..+.         .+..
T Consensus       254 ~l~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~~~l~ell~~aDiVi~~~---------~t~~  324 (479)
T 1v8b_A          254 LISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCT---------GNVD  324 (479)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECC---------SSSS
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEecCHHHHHhcCCEEEECC---------Chhh
Confidence            57799999999999986     555 7777776665321         1124788899999965542         1222


Q ss_pred             CCC------CC------ceeec-c-cCHHHHHH--HHHccccccccccCCCCCCCCCCCCcccC--CcEEEc
Q psy5266         124 LVQ------LD------NCGNG-L-LDQEALVE--FLRDKKIGGAGLDVMIPEPMPADHPLVQL--DNCEIR  177 (180)
Q Consensus       124 l~~------~~------Nv~~g-~-~~~~al~~--~L~~g~l~ga~ldV~~~Eplp~~~pl~~~--~nv~it  177 (180)
                      +++      ++      |+.++ . ++++++.+  +|++|+|+ +++||+   |+|+++|+|.+  |||++|
T Consensus       325 lI~~~~l~~MK~gailiNvgrg~~EId~~aL~~~~AL~~g~I~-a~lDv~---plp~~~~l~~l~~~nvv~t  392 (479)
T 1v8b_A          325 VIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVK-PQVDRI---TLPNGNKIIVLARGRLLNL  392 (479)
T ss_dssp             SBCHHHHTTCCTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEE-TTEEEE---ECTTSCEEEEEGGGSBHHH
T ss_pred             hcCHHHHhhcCCCcEEEEeCCCCccccchhhhccccceeeeEe-eeEEEE---ECCCCCeeeEecCCCEEEE
Confidence            332      22      77776 6 79999999  99999998 889997   66778999999  999998

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=98.05  E-value=7.4e-08  Score=84.85  Aligned_cols=105  Identities=10%  Similarity=0.052  Sum_probs=77.5

Q ss_pred             CCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCcc---------CHHHHHHHHhcCCcceEEeecCCCCCCCCCCC
Q psy5266          59 ALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGLL---------DQEALVEFLRDKKIGGAGLDVMIPEPLPADHP  123 (180)
Q Consensus        59 pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~v---------d~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~  123 (180)
                      .+.++|.++||.+.+++     ++. |+.++-..|...-         ...++.++++++|++..++         .+..
T Consensus       274 ~L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~~~l~ell~~aDiVi~~~---------~t~~  344 (494)
T 3d64_A          274 MIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTMEYAADKADIFVTAT---------GNYH  344 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECS---------SSSC
T ss_pred             ccCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEeCCHHHHHhcCCEEEECC---------Cccc
Confidence            47789999999999986     566 8888777665321         1124788999999965553         2333


Q ss_pred             CCC------CC------ceeec-c-cCHHHHHHHHHccccccccccCCCCCCCCCCCCcccC--CcEEEc
Q psy5266         124 LVQ------LD------NCGNG-L-LDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQL--DNCEIR  177 (180)
Q Consensus       124 l~~------~~------Nv~~g-~-~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~--~nv~it  177 (180)
                      +++      ++      |+++| . +++++| ++|++|+|+ +++|+   +|+|.++|||.+  |||++|
T Consensus       345 lI~~~~l~~MK~gAilINvgrg~veID~~aL-~AL~~g~I~-~~~Dv---~plp~~~pL~~l~~~nvv~t  409 (494)
T 3d64_A          345 VINHDHMKAMRHNAIVCNIGHFDSEIDVAST-RQYQWENIK-PQVDH---IIFPDGKRVILLAEGRLVNL  409 (494)
T ss_dssp             SBCHHHHHHCCTTEEEEECSSSSCSBCCGGG-TTSEEEEEE-TTEEE---EECTTSCEEEEEGGGSBHHH
T ss_pred             ccCHHHHhhCCCCcEEEEcCCCcchhchHHH-HhhhcCccc-eeEEE---EECCCCCchhhcCCCCEEEE
Confidence            443      22      77777 5 599999 999999997 55555   588889999999  999998

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=97.98  E-value=1.8e-06  Score=73.37  Aligned_cols=98  Identities=16%  Similarity=0.296  Sum_probs=72.1

Q ss_pred             cCCcccc-----ceeeeEEEeccccccC--Cccc-----e----eeccCHHHHhccCCEEEEcc--CCCCCCcceeCHhH
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTG--GSKQ-----V----YLILVIRTRSAQSDFIFVTC--ALTKDTEQLIGRKQ   72 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~--~~~~-----~----~~~~~l~~l~~~~D~v~~h~--pl~~~T~glIg~~~   72 (180)
                      .|.||+.     ..+|+++..+|++...  ...+     .    ....+++++++.+|+|+.++  |.+ +|.++|+.+.
T Consensus       176 ~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~-~t~~li~~~~  254 (377)
T 2vhw_A          176 AGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGA-KAPKLVSNSL  254 (377)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTS-CCCCCBCHHH
T ss_pred             CCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCC-CCcceecHHH
Confidence            4666663     3578888898876542  1111     0    12457889999999999955  665 8999999999


Q ss_pred             HhccCCCcEEEecC--CCCccCHHHHHHHHhcCCcceEEeecCCC-CCCCCCCCCCCCCcee
Q psy5266          73 FSLMKPTAILINTS--RGGLLDQEALVEFLRDKKIGGAGLDVMIP-EPLPADHPLVQLDNCG  131 (180)
Q Consensus        73 i~~mk~g~~lvn~~--Rg~~vd~~al~~~L~~~~i~~~~lDv~~~-ep~~~~~~l~~~~Nv~  131 (180)
                      ++.||+|.++||++  +|+                      +++. ||.+.+.+++..+|+.
T Consensus       255 l~~mk~g~~iV~va~~~Gg----------------------v~e~~ep~~~~~~~~~~~~v~  294 (377)
T 2vhw_A          255 VAHMKPGAVLVDIAIDQGG----------------------CFEGSRPTTYDHPTFAVHDTL  294 (377)
T ss_dssp             HTTSCTTCEEEEGGGGTTC----------------------SBTTCCCBCSSSCEEEETTEE
T ss_pred             HhcCCCCcEEEEEecCCCC----------------------ccccccCCCCCCCEEEECCEE
Confidence            99999999999998  332                      4555 6766678888888887

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=97.35  E-value=8.8e-06  Score=70.31  Aligned_cols=116  Identities=14%  Similarity=0.246  Sum_probs=80.0

Q ss_pred             CHHHHhccCCEEEEccC-CCCCCcceeCHhHHhc-----cC--CCcEEEecCC--CCc-----cCHHHHHHHHhcCCcce
Q psy5266          43 VIRTRSAQSDFIFVTCA-LTKDTEQLIGRKQFSL-----MK--PTAILINTSR--GGL-----LDQEALVEFLRDKKIGG  107 (180)
Q Consensus        43 ~l~~l~~~~D~v~~h~p-l~~~T~glIg~~~i~~-----mk--~g~~lvn~~R--g~~-----vd~~al~~~L~~~~i~~  107 (180)
                      .+++.++..     ... +.++|.+++|.+.+++     ++  -|+.++.+++  +.+     ++.++|.+..+..+.  
T Consensus       197 ~~~~~~~~~-----G~~~l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g~~~~~~gvdl~~L~~~~d~~~~--  269 (419)
T 1gtm_A          197 TIREAAKVL-----GWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGS--  269 (419)
T ss_dssp             HHHHHHHHT-----TCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSS--
T ss_pred             HHHHHHHHh-----CCcccCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCccccCccCCCHHHHHHHHHhcCE--
Confidence            455656542     356 7899999999999886     32  4778876643  322     467777777665333  


Q ss_pred             EEeecCCCCCCCCCC-----CCCCCC-----ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCC-CCcccCCcEE
Q psy5266         108 AGLDVMIPEPLPADH-----PLVQLD-----NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPAD-HPLVQLDNCE  175 (180)
Q Consensus       108 ~~lDv~~~ep~~~~~-----~l~~~~-----Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~-~pl~~~~nv~  175 (180)
                          +   .|++.++     .++.++     |++|| .+++++ .++|+.+.|++++     +||++++ +|+|+++||+
T Consensus       270 ----l---~~l~~t~~i~~~~l~~mk~dilIn~ArG~~Vde~a-~~aL~~~~I~~aA-----neP~t~~a~~ll~~~~V~  336 (419)
T 1gtm_A          270 ----V---KDFPGATNITNEELLELEVDVLAPAAIEEVITKKN-ADNIKAKIVAEVA-----NGPVTPEADEILFEKGIL  336 (419)
T ss_dssp             ----S---TTCTTSEEECHHHHHHSCCSEEEECSCSCCBCTTG-GGGCCCSEEECCS-----SSCBCHHHHHHHHHTTCE
T ss_pred             ----e---ecCccCeeeCHHHHHhCCCCEEEECCCcccCCHHH-HHHhcCCEEEEee-----CCCCCcchHHHHhcCCEE
Confidence                1   1222222     233333     77776 899999 6899999999988     7887664 7999999999


Q ss_pred             EcC
Q psy5266         176 IRG  178 (180)
Q Consensus       176 it~  178 (180)
                      +|+
T Consensus       337 itP  339 (419)
T 1gtm_A          337 QIP  339 (419)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            997

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=97.28  E-value=0.00014  Score=61.51  Aligned_cols=88  Identities=11%  Similarity=0.104  Sum_probs=67.1

Q ss_pred             cCCcccc-----ceeeeEEEeccccccC--Cccc-eeeccCHHHHhc-cCCEEEEccCCCCCCcceeCHhHHhccCCCcE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTG--GSKQ-VYLILVIRTRSA-QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAI   81 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~--~~~~-~~~~~~l~~l~~-~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~   81 (180)
                      -|+||+.     +.+|++++.+|.+...  +.+. -....+++++++ .|||++-+     +|.++|+.+.+.+|| ..+
T Consensus       183 ~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v~~~ell~~~~DIliP~-----A~~~~I~~~~~~~lk-~~i  256 (355)
T 1c1d_A          183 LGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPC-----AMGGVITTEVARTLD-CSV  256 (355)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGGGCCCSEEEEC-----SCSCCBCHHHHHHCC-CSE
T ss_pred             cCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEeChHHhhcCccceecHh-----HHHhhcCHHHHhhCC-CCE
Confidence            4667763     4688999999887532  1111 123457789998 99999743     789999999999998 679


Q ss_pred             EEecCCCCccCHHHHHHHHhcCCc
Q psy5266          82 LINTSRGGLLDQEALVEFLRDKKI  105 (180)
Q Consensus        82 lvn~~Rg~~vd~~al~~~L~~~~i  105 (180)
                      ++|.+++.+.++++ .++|+++.+
T Consensus       257 Vie~AN~p~t~~eA-~~~L~~~gI  279 (355)
T 1c1d_A          257 VAGAANNVIADEAA-SDILHARGI  279 (355)
T ss_dssp             ECCSCTTCBCSHHH-HHHHHHTTC
T ss_pred             EEECCCCCCCCHHH-HHHHHhCCE
Confidence            99999999999777 578888877

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=97.17  E-value=7.4e-05  Score=63.10  Aligned_cols=102  Identities=18%  Similarity=0.248  Sum_probs=57.5

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCC--cc-----ce----eeccCHHHHhccCCEEEEccCCCC-CCcceeCHhHH
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGG--SK-----QV----YLILVIRTRSAQSDFIFVTCALTK-DTEQLIGRKQF   73 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~--~~-----~~----~~~~~l~~l~~~~D~v~~h~pl~~-~T~glIg~~~i   73 (180)
                      .|.||+.     ..+|+++..+|.+....  ..     ..    ....+++++++.+|+|+.+++... .+..++....+
T Consensus       174 aG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~~~~li~~~~l  253 (369)
T 2eez_A          174 GGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPGAKAPKLVTRDML  253 (369)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC-------CCSCHHHH
T ss_pred             CCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCccccchhHHHHHH
Confidence            3566653     24678888888764320  10     11    124568899999999999999876 68899999999


Q ss_pred             hccCCCcEEEecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCcee
Q psy5266          74 SLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCG  131 (180)
Q Consensus        74 ~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~  131 (180)
                      ..||++.++||++-.             .+   ++ +|++  ||.+.+.+++..+|+.
T Consensus       254 ~~mk~gg~iV~v~~~-------------~g---g~-~d~~--ep~~~~~~~~~~~~v~  292 (369)
T 2eez_A          254 SLMKEGAVIVDVAVD-------------QG---GC-VETI--RPTTHAEPTYVVDGVV  292 (369)
T ss_dssp             TTSCTTCEEEECC--------------------------------------CEETTEE
T ss_pred             HhhcCCCEEEEEecC-------------CC---CC-CCcc--cCCCCCCCEEEECCEE
Confidence            999999999999721             11   33 7777  5555567777778776

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=97.11  E-value=0.00037  Score=59.68  Aligned_cols=50  Identities=22%  Similarity=0.375  Sum_probs=42.8

Q ss_pred             CHHHHhccCCEEEEc--cCCCCCCcceeCHhHHhccCCCcEEEecC--CCCccCH
Q psy5266          43 VIRTRSAQSDFIFVT--CALTKDTEQLIGRKQFSLMKPTAILINTS--RGGLLDQ   93 (180)
Q Consensus        43 ~l~~l~~~~D~v~~h--~pl~~~T~glIg~~~i~~mk~g~~lvn~~--Rg~~vd~   93 (180)
                      +++++++.+|+|+.+  +|. .++..+|+.+.+++||+|.++|+++  ||+.+++
T Consensus       248 ~l~e~~~~aDvVI~~~~~pg-~~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~  301 (401)
T 1x13_A          248 LFAAQAKEVDIIVTTALIPG-KPAPKLITREMVDSMKAGSVIVDLAAQNGGNCEY  301 (401)
T ss_dssp             HHHHHHHHCSEEEECCCCTT-SCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTT
T ss_pred             HHHHHhCCCCEEEECCccCC-CCCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCc
Confidence            478899999999999  443 3477999999999999999999999  8887765

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=97.07  E-value=0.00043  Score=59.48  Aligned_cols=52  Identities=21%  Similarity=0.512  Sum_probs=42.2

Q ss_pred             cCHHHHhccCCEEEEccCCC-CCCcceeCHhHHhccCCCcEEEecC--CCCccCH
Q psy5266          42 LVIRTRSAQSDFIFVTCALT-KDTEQLIGRKQFSLMKPTAILINTS--RGGLLDQ   93 (180)
Q Consensus        42 ~~l~~l~~~~D~v~~h~pl~-~~T~glIg~~~i~~mk~g~~lvn~~--Rg~~vd~   93 (180)
                      .+|++.+++||+|+.++... ..+..+|+++.+++||+|+++|+++  +|+.++.
T Consensus       267 ~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e~  321 (405)
T 4dio_A          267 ALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVERGGNIEG  321 (405)
T ss_dssp             HHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGGGTCSBTT
T ss_pred             hHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCCCCCCccc
Confidence            37899999999998764322 2577899999999999999999998  7776544

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=97.00  E-value=8.8e-05  Score=60.92  Aligned_cols=104  Identities=8%  Similarity=-0.011  Sum_probs=74.3

Q ss_pred             cCCccccc-----eeeeEEEeccccccCCc----cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcE
Q psy5266          11 TGTPGQVH-----LIVCVLIRYHVDLTGGS----KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAI   81 (180)
Q Consensus        11 ~G~iG~~~-----~~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~   81 (180)
                      +|.+|+.+     -.|..+..||++.....    .+.....++++++++||+|++++|-...+..+++.+.+..+++|.+
T Consensus        17 ~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~~l~~~~~g~i   96 (306)
T 3l6d_A           17 LGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLGMPGVARALAHRT   96 (306)
T ss_dssp             CSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHTSTTHHHHTTTCE
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhcccchhhccCCCE
Confidence            56777751     12346677776654211    1334567999999999999999997766777775435667889999


Q ss_pred             EEecCCCCccCHHHHHHHHhcCCcceEEeecCC
Q psy5266          82 LINTSRGGLLDQEALVEFLRDKKIGGAGLDVMI  114 (180)
Q Consensus        82 lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~  114 (180)
                      +|+++.........+.+.+++..+.++-.+|+-
T Consensus        97 vid~st~~~~~~~~l~~~~~~~g~~~vdapv~g  129 (306)
T 3l6d_A           97 IVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVA  129 (306)
T ss_dssp             EEECCCCCTTHHHHHHHHHHHTTCEEEEEEEES
T ss_pred             EEECCCCCHHHHHHHHHHHHHcCCeEEeccccc
Confidence            999999888888888888887666555445653

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=96.99  E-value=0.0006  Score=55.58  Aligned_cols=101  Identities=15%  Similarity=0.101  Sum_probs=72.8

Q ss_pred             cCCccccc-----eeeeEEEeccccccCCc----cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcE
Q psy5266          11 TGTPGQVH-----LIVCVLIRYHVDLTGGS----KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAI   81 (180)
Q Consensus        11 ~G~iG~~~-----~~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~   81 (180)
                      +|.+|+.+     --|..+..||.+.....    .+.....+++++.+ ||+|++++|-......++ .+....++++.+
T Consensus        23 ~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~-~~l~~~l~~g~i  100 (296)
T 3qha_A           23 LGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVV-GELAGHAKPGTV  100 (296)
T ss_dssp             CSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHH-HHHHTTCCTTCE
T ss_pred             cCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHH-HHHHHhcCCCCE
Confidence            67777751     12456777877665321    22345679999999 999999999766666666 666777999999


Q ss_pred             EEecCCCCccCHHHHHHHHhcCCcceEEeecC
Q psy5266          82 LINTSRGGLLDQEALVEFLRDKKIGGAGLDVM  113 (180)
Q Consensus        82 lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~  113 (180)
                      +|+.+.........+.+.+++..+.+...+++
T Consensus       101 vv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~  132 (296)
T 3qha_A          101 IAIHSTISDTTAVELARDLKARDIHIVDAPVS  132 (296)
T ss_dssp             EEECSCCCHHHHHHHHHHHGGGTCEEEECCEE
T ss_pred             EEEeCCCCHHHHHHHHHHHHHcCCEEEeCCCc
Confidence            99999888777788888888766655444454

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=96.98  E-value=0.00039  Score=57.36  Aligned_cols=103  Identities=12%  Similarity=0.041  Sum_probs=73.6

Q ss_pred             cCCccccc-----eeeeEEEeccccccCC----ccceeeccCHHHHhccCCEEEEccCCCCCCcceeCH-hHHhccCCCc
Q psy5266          11 TGTPGQVH-----LIVCVLIRYHVDLTGG----SKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGR-KQFSLMKPTA   80 (180)
Q Consensus        11 ~G~iG~~~-----~~~~~~~~~~~~~~~~----~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~-~~i~~mk~g~   80 (180)
                      +|.+|+.+     -.|..+..||++....    ..+.....++++++++||+|++++|-......++.. +.+..++++.
T Consensus        39 ~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~~~~~~l~~~~  118 (320)
T 4dll_A           39 TGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFAQGVAAAMKPGS  118 (320)
T ss_dssp             CTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTTTCHHHHCCTTC
T ss_pred             ccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcchhHHhhCCCCC
Confidence            67888751     1245677887765431    123455679999999999999999976555555533 4566789999


Q ss_pred             EEEecCCCCccCHHHHHHHHhcCCcceEEeecC
Q psy5266          81 ILINTSRGGLLDQEALVEFLRDKKIGGAGLDVM  113 (180)
Q Consensus        81 ~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~  113 (180)
                      ++|+++.......+.+.+.+++..+..+..+|+
T Consensus       119 ~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~  151 (320)
T 4dll_A          119 LFLDMASITPREARDHAARLGALGIAHLDTPVS  151 (320)
T ss_dssp             EEEECSCCCHHHHHHHHHHHHHTTCEEEECCEE
T ss_pred             EEEecCCCCHHHHHHHHHHHHHcCCEEEeCCCc
Confidence            999999988878888888888776654444444

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=96.89  E-value=0.00044  Score=58.97  Aligned_cols=81  Identities=15%  Similarity=0.224  Sum_probs=58.6

Q ss_pred             cCCcccc-----ceeeeEEEeccccccC--Cccce---------------------------eeccCHHHHhccCCEEEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTG--GSKQV---------------------------YLILVIRTRSAQSDFIFV   56 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~--~~~~~---------------------------~~~~~l~~l~~~~D~v~~   56 (180)
                      .|.+|..     +.+|+++..||.+...  ..++.                           ....++++.+++||+|+.
T Consensus       192 ~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~l~~aDIVI~  271 (381)
T 3p2y_A          192 VGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDAITKFDIVIT  271 (381)
T ss_dssp             CSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred             chHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHHHhcCCEEEE
Confidence            4666663     4678899999887642  11100                           012468899999999987


Q ss_pred             cc--CCCCCCcceeCHhHHhccCCCcEEEecC--CCCccC
Q psy5266          57 TC--ALTKDTEQLIGRKQFSLMKPTAILINTS--RGGLLD   92 (180)
Q Consensus        57 h~--pl~~~T~glIg~~~i~~mk~g~~lvn~~--Rg~~vd   92 (180)
                      ++  |. .++..+|+++.+++||+|+++|+++  +|+.+.
T Consensus       272 tv~iPg-~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~e  310 (381)
T 3p2y_A          272 TALVPG-RPAPRLVTAAAATGMQPGSVVVDLAGETGGNCE  310 (381)
T ss_dssp             CCCCTT-SCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBT
T ss_pred             CCCCCC-cccceeecHHHHhcCCCCcEEEEEeCCCCCccc
Confidence            65  53 3467899999999999999999997  666655

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=96.74  E-value=0.00072  Score=54.61  Aligned_cols=103  Identities=10%  Similarity=-0.090  Sum_probs=70.4

Q ss_pred             cCCccccc-----eeeeEEEeccccccCCc----cceeeccCHHHHhccCCEEEEccCCCCCCccee-C-HhHHhccCCC
Q psy5266          11 TGTPGQVH-----LIVCVLIRYHVDLTGGS----KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLI-G-RKQFSLMKPT   79 (180)
Q Consensus        11 ~G~iG~~~-----~~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glI-g-~~~i~~mk~g   79 (180)
                      +|.+|+.+     -.|..+..||++.....    .+.....++++++++||+|++++|-...+..++ + .+.+..++++
T Consensus         9 ~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l~~~l~~g   88 (287)
T 3pdu_A            9 LGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGVLEGIGGG   88 (287)
T ss_dssp             CSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGTCCTT
T ss_pred             cCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhhhhcccCC
Confidence            57777751     12456777877655321    123456799999999999999999765555544 1 3445668899


Q ss_pred             cEEEecCCCCccCHHHHHHHHhcCCcceEEeecC
Q psy5266          80 AILINTSRGGLLDQEALVEFLRDKKIGGAGLDVM  113 (180)
Q Consensus        80 ~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~  113 (180)
                      .++|+++.........+.+.+++..+.+...+++
T Consensus        89 ~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~  122 (287)
T 3pdu_A           89 RGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVS  122 (287)
T ss_dssp             CEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEE
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHcCCEEEECCcc
Confidence            9999999988777778888887765544333333

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=96.55  E-value=0.0018  Score=53.06  Aligned_cols=104  Identities=11%  Similarity=0.056  Sum_probs=74.3

Q ss_pred             cCCccccc---ee--eeEEEeccccccCCc----cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcE
Q psy5266          11 TGTPGQVH---LI--VCVLIRYHVDLTGGS----KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAI   81 (180)
Q Consensus        11 ~G~iG~~~---~~--~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~   81 (180)
                      +|.+|+-+   +.  |-.+..||++.....    .+.....++.|+.+.||+|++++|-.......+....+..++++.+
T Consensus        13 LG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~~~~~~~i   92 (297)
T 4gbj_A           13 LGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELVEKLGKDGV   92 (297)
T ss_dssp             CSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHHHHHCTTCE
T ss_pred             cHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHHhhcCCCeE
Confidence            57777651   11  346778887765422    2345677999999999999999997777777777788889999999


Q ss_pred             EEecCCCCccCHHHHHHHHhcCCcceEEeecCC
Q psy5266          82 LINTSRGGLLDQEALVEFLRDKKIGGAGLDVMI  114 (180)
Q Consensus        82 lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~  114 (180)
                      +|+.+-...-....+.+.+++..+.++-.+|+-
T Consensus        93 iid~sT~~p~~~~~~~~~~~~~g~~~ldapVsG  125 (297)
T 4gbj_A           93 HVSMSTISPETSRQLAQVHEWYGAHYVGAPIFA  125 (297)
T ss_dssp             EEECSCCCHHHHHHHHHHHHHTTCEEEECCEEC
T ss_pred             EEECCCCChHHHHHHHHHHHhcCCceecCCcCC
Confidence            999987776667788888888888766666653

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=96.53  E-value=0.0036  Score=52.93  Aligned_cols=47  Identities=21%  Similarity=0.337  Sum_probs=39.0

Q ss_pred             HHHHhccCCEEEEcc--CCCCCCcceeCHhHHhccCCCcEEEecC--CCCcc
Q psy5266          44 IRTRSAQSDFIFVTC--ALTKDTEQLIGRKQFSLMKPTAILINTS--RGGLL   91 (180)
Q Consensus        44 l~~l~~~~D~v~~h~--pl~~~T~glIg~~~i~~mk~g~~lvn~~--Rg~~v   91 (180)
                      ++++++.+|+|+.+.  |.. .+.++++.+.++.||+|.++++++  ||+.+
T Consensus       251 l~~~~~~aDvVi~~~~~pg~-~~~~li~~~~l~~mk~g~vivdva~~~gg~~  301 (384)
T 1l7d_A          251 VLKELVKTDIAITTALIPGK-PAPVLITEEMVTKMKPGSVIIDLAVEAGGNC  301 (384)
T ss_dssp             HHHHHTTCSEEEECCCCTTS-CCCCCSCHHHHTTSCTTCEEEETTGGGTCSS
T ss_pred             HHHHhCCCCEEEECCccCCC-CCCeeeCHHHHhcCCCCCEEEEEecCCCCCe
Confidence            888999999999766  332 356889999999999999999998  77654

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=96.48  E-value=0.0018  Score=54.57  Aligned_cols=102  Identities=11%  Similarity=0.106  Sum_probs=74.8

Q ss_pred             cCCccccc-----eeeeEEEeccccccCC----ccceeeccCHHHHhccC---CEEEEccCCCCCCcceeCHhHHhccCC
Q psy5266          11 TGTPGQVH-----LIVCVLIRYHVDLTGG----SKQVYLILVIRTRSAQS---DFIFVTCALTKDTEQLIGRKQFSLMKP   78 (180)
Q Consensus        11 ~G~iG~~~-----~~~~~~~~~~~~~~~~----~~~~~~~~~l~~l~~~~---D~v~~h~pl~~~T~glIg~~~i~~mk~   78 (180)
                      +|.+|+.+     --|..+..||.+....    ..+.....+++++++.+   |+|++++|-. .+..++ .+.+..+++
T Consensus        30 lG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v~~vl-~~l~~~l~~  107 (358)
T 4e21_A           30 LGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-VVDSML-QRMTPLLAA  107 (358)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-GHHHHH-HHHGGGCCT
T ss_pred             chHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-HHHHHH-HHHHhhCCC
Confidence            56777651     1245677787765421    12234567899999999   9999999977 767666 456667899


Q ss_pred             CcEEEecCCCCccCHHHHHHHHhcCCcceEEeecCC
Q psy5266          79 TAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMI  114 (180)
Q Consensus        79 g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~  114 (180)
                      +.++|+.+.....+...+.+.+++..+.+...+|+-
T Consensus       108 g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsG  143 (358)
T 4e21_A          108 NDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSG  143 (358)
T ss_dssp             TCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEEC
T ss_pred             CCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCC
Confidence            999999999887788888888888877766666654

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=96.09  E-value=0.0042  Score=50.78  Aligned_cols=102  Identities=8%  Similarity=-0.083  Sum_probs=69.7

Q ss_pred             cCCccccc-----eeeeEEEeccccccCCc----cceeeccCHHHHhccCCEEEEccCCCCCCccee--CHhHHhccCCC
Q psy5266          11 TGTPGQVH-----LIVCVLIRYHVDLTGGS----KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLI--GRKQFSLMKPT   79 (180)
Q Consensus        11 ~G~iG~~~-----~~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glI--g~~~i~~mk~g   79 (180)
                      +|.+|+.+     --|..+..||++.....    .+.....++++++++||+|++++|-...+..++  ..+.+..++++
T Consensus        29 ~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g  108 (310)
T 3doj_A           29 LGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVVFDKGGVLEQICEG  108 (310)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCTT
T ss_pred             ccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHhCchhhhhccCCC
Confidence            56667651     12456778887655321    123456799999999999999999765555554  23445678999


Q ss_pred             cEEEecCCCCccCHHHHHHHHhcCCcceEEeec
Q psy5266          80 AILINTSRGGLLDQEALVEFLRDKKIGGAGLDV  112 (180)
Q Consensus        80 ~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv  112 (180)
                      .++|+++.........+.+.+++..+..+..+|
T Consensus       109 ~~vv~~st~~~~~~~~~~~~~~~~g~~~v~~pv  141 (310)
T 3doj_A          109 KGYIDMSTVDAETSLKINEAITGKGGRFVEGPV  141 (310)
T ss_dssp             CEEEECSCCCHHHHHHHHHHHHHTTCEEEECCE
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHcCCEEEeCCC
Confidence            999999987777777888888776554433333

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=96.04  E-value=0.0046  Score=49.80  Aligned_cols=103  Identities=9%  Similarity=-0.069  Sum_probs=70.3

Q ss_pred             cCCccccc-----eeeeEEEeccccccCCc----cceeeccCHHHHhccCCEEEEccCCCCCCccee--CHhHHhccCCC
Q psy5266          11 TGTPGQVH-----LIVCVLIRYHVDLTGGS----KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLI--GRKQFSLMKPT   79 (180)
Q Consensus        11 ~G~iG~~~-----~~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glI--g~~~i~~mk~g   79 (180)
                      +|.+|+.+     -.|..+..||++.....    .+.....++++++++||+|++++|-......++  ..+....++++
T Consensus         9 ~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~~   88 (287)
T 3pef_A            9 LGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGVLEGIGEG   88 (287)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCTT
T ss_pred             ecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchHhhcCCCC
Confidence            46666651     12456778887765321    133456799999999999999999655555554  13455668999


Q ss_pred             cEEEecCCCCccCHHHHHHHHhcCCcceEEeecC
Q psy5266          80 AILINTSRGGLLDQEALVEFLRDKKIGGAGLDVM  113 (180)
Q Consensus        80 ~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~  113 (180)
                      .++|+++.........+.+.+++..+.....+++
T Consensus        89 ~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~  122 (287)
T 3pef_A           89 RGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVS  122 (287)
T ss_dssp             CEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEE
T ss_pred             CEEEeCCCCCHHHHHHHHHHHHHhCCEEEECCCc
Confidence            9999998877777778888887765544333333

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=95.91  E-value=0.00045  Score=56.41  Aligned_cols=103  Identities=13%  Similarity=0.039  Sum_probs=68.3

Q ss_pred             cCCccccc-----eeeeEEEeccccccCCc----cceee-ccCHHHHhccCCEEEEccCCCCCCcceeC--HhHHhccCC
Q psy5266          11 TGTPGQVH-----LIVCVLIRYHVDLTGGS----KQVYL-ILVIRTRSAQSDFIFVTCALTKDTEQLIG--RKQFSLMKP   78 (180)
Q Consensus        11 ~G~iG~~~-----~~~~~~~~~~~~~~~~~----~~~~~-~~~l~~l~~~~D~v~~h~pl~~~T~glIg--~~~i~~mk~   78 (180)
                      +|.+|+..     --|..+..||++.....    .+... ..++++++++||+|++++|-......++-  .+....+++
T Consensus        15 ~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~   94 (303)
T 3g0o_A           15 LGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGEDGVAHLMKP   94 (303)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--CCCGGGSCT
T ss_pred             CCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhChhhHHhhCCC
Confidence            56667651     12346777776654211    12233 67899999999999999997655555442  344566889


Q ss_pred             CcEEEecCCCCccCHHHHHHHHhcCCcceEEeecC
Q psy5266          79 TAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVM  113 (180)
Q Consensus        79 g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~  113 (180)
                      +.++|+++.........+.+.+++..+.+...+++
T Consensus        95 g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~  129 (303)
T 3g0o_A           95 GSAVMVSSTISSADAQEIAAALTALNLNMLDAPVS  129 (303)
T ss_dssp             TCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEE
T ss_pred             CCEEEecCCCCHHHHHHHHHHHHHcCCeEEeCCCC
Confidence            99999999887777778888887765544333333

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=95.90  E-value=0.0025  Score=52.32  Aligned_cols=102  Identities=12%  Similarity=0.060  Sum_probs=67.2

Q ss_pred             cCCccccc-----eeee-EEEeccccc--cC----CccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCC
Q psy5266          11 TGTPGQVH-----LIVC-VLIRYHVDL--TG----GSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKP   78 (180)
Q Consensus        11 ~G~iG~~~-----~~~~-~~~~~~~~~--~~----~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~   78 (180)
                      +|.+|+..     --|. .+..||.+.  ..    ...+.....++++++++||+|++++|-..... .+ .+....+++
T Consensus        32 ~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~-~~-~~l~~~l~~  109 (312)
T 3qsg_A           32 FGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECDVIFSLVTAQAALE-VA-QQAGPHLCE  109 (312)
T ss_dssp             CSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHHHHCSEEEECSCTTTHHH-HH-HHHGGGCCT
T ss_pred             ccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHHhcCCEEEEecCchhHHH-HH-HhhHhhcCC
Confidence            56666641     0144 777888752  11    11233456789999999999999999664333 33 455566889


Q ss_pred             CcEEEecCCCCccCHHHHHHHHhcC--CcceEEeecCC
Q psy5266          79 TAILINTSRGGLLDQEALVEFLRDK--KIGGAGLDVMI  114 (180)
Q Consensus        79 g~~lvn~~Rg~~vd~~al~~~L~~~--~i~~~~lDv~~  114 (180)
                      +.++|+.+.........+.+.+.+.  .+..+.-+|+-
T Consensus       110 ~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~pv~g  147 (312)
T 3qsg_A          110 GALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAVMS  147 (312)
T ss_dssp             TCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEEECS
T ss_pred             CCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEeccccC
Confidence            9999999887777777777777765  44444345554

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=95.79  E-value=0.0034  Score=54.82  Aligned_cols=102  Identities=10%  Similarity=0.002  Sum_probs=70.4

Q ss_pred             cCCccccc-----eeeeEEEeccccccC---Ccc-----ceeeccCHHHHhcc---CCEEEEccCCCCCCcceeCHhHHh
Q psy5266          11 TGTPGQVH-----LIVCVLIRYHVDLTG---GSK-----QVYLILVIRTRSAQ---SDFIFVTCALTKDTEQLIGRKQFS   74 (180)
Q Consensus        11 ~G~iG~~~-----~~~~~~~~~~~~~~~---~~~-----~~~~~~~l~~l~~~---~D~v~~h~pl~~~T~glIg~~~i~   74 (180)
                      +|.+|+..     --|..+..|+++...   ..+     +.....+++++++.   +|+|++++|-...+..++ .+...
T Consensus        23 lG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~vl-~~l~~  101 (480)
T 2zyd_A           23 MAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAI-DSLKP  101 (480)
T ss_dssp             CSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSHHHHHH-HHHGG
T ss_pred             cHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHHHHHHH-HHHHh
Confidence            56666651     013356677665432   111     34456789999887   999999999877777787 35556


Q ss_pred             ccCCCcEEEecCCCCccCHHHHHHHHhcCCcceEEeecC
Q psy5266          75 LMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVM  113 (180)
Q Consensus        75 ~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~  113 (180)
                      .+++|.++|+++.+...+...+.+.+++..+.....+|+
T Consensus       102 ~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv~  140 (480)
T 2zyd_A          102 YLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVS  140 (480)
T ss_dssp             GCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             hcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCccc
Confidence            788899999999987777777888887755544444554

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=95.77  E-value=0.00084  Score=54.20  Aligned_cols=96  Identities=15%  Similarity=0.103  Sum_probs=65.0

Q ss_pred             cCCccccc-----eeeeEEEeccccccCC----ccceeeccCHHHHhccCCEEEEccCCCCCCcceeC--HhHHhccCCC
Q psy5266          11 TGTPGQVH-----LIVCVLIRYHVDLTGG----SKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIG--RKQFSLMKPT   79 (180)
Q Consensus        11 ~G~iG~~~-----~~~~~~~~~~~~~~~~----~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg--~~~i~~mk~g   79 (180)
                      .|.+|+.+     -.|..+..||++....    ..+.....+++++++++|+|++++|-......++.  .+....++++
T Consensus        13 ~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l~~~l~~~   92 (299)
T 1vpd_A           13 LGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPG   92 (299)
T ss_dssp             CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCTT
T ss_pred             chHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchHhhcCCCC
Confidence            57777752     1134566777654321    01234567899999999999999996655555552  2344568899


Q ss_pred             cEEEecCCCCccCHHHHHHHHhcCCcc
Q psy5266          80 AILINTSRGGLLDQEALVEFLRDKKIG  106 (180)
Q Consensus        80 ~~lvn~~Rg~~vd~~al~~~L~~~~i~  106 (180)
                      .++|+++.+...+.+.+.+.+.+..+.
T Consensus        93 ~~vv~~s~~~~~~~~~l~~~~~~~g~~  119 (299)
T 1vpd_A           93 TVLIDMSSIAPLASREISDALKAKGVE  119 (299)
T ss_dssp             CEEEECSCCCHHHHHHHHHHHHTTTCE
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            999999888766677888888775443

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=95.75  E-value=0.0036  Score=50.26  Aligned_cols=94  Identities=11%  Similarity=-0.001  Sum_probs=62.8

Q ss_pred             cCCccccc-----eeeeEEEeccccccCCc----cceeeccCHHHHhccCCEEEEccCCCCCCcceeCH--hHHhccCCC
Q psy5266          11 TGTPGQVH-----LIVCVLIRYHVDLTGGS----KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGR--KQFSLMKPT   79 (180)
Q Consensus        11 ~G~iG~~~-----~~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~--~~i~~mk~g   79 (180)
                      .|.+|+.+     -.|..+..|+ +.....    .+.....+++++++++|+|++++|-...+..++..  +....++++
T Consensus        11 ~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~   89 (295)
T 1yb4_A           11 LGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGCAKTSLQG   89 (295)
T ss_dssp             CSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSSTTSCCTT
T ss_pred             cCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhHhhcCCCC
Confidence            57788752     1244667777 543211    12334568999999999999999966544444432  333458889


Q ss_pred             cEEEecCCCCccCHHHHHHHHhcCCc
Q psy5266          80 AILINTSRGGLLDQEALVEFLRDKKI  105 (180)
Q Consensus        80 ~~lvn~~Rg~~vd~~al~~~L~~~~i  105 (180)
                      .++++++.+...+.+.+.+.+++..+
T Consensus        90 ~~vv~~s~~~~~~~~~l~~~~~~~g~  115 (295)
T 1yb4_A           90 KTIVDMSSISPIETKRFAQRVNEMGA  115 (295)
T ss_dssp             EEEEECSCCCHHHHHHHHHHHHTTTE
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            99999998876667788888876433

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=95.46  E-value=0.007  Score=49.65  Aligned_cols=103  Identities=12%  Similarity=0.109  Sum_probs=74.3

Q ss_pred             cCCcccc---cee--eeEEEeccccccCCc----cceeeccCHHHHhccCCEEEEccCCCCCCcceeC--HhHHhccCCC
Q psy5266          11 TGTPGQV---HLI--VCVLIRYHVDLTGGS----KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIG--RKQFSLMKPT   79 (180)
Q Consensus        11 ~G~iG~~---~~~--~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg--~~~i~~mk~g   79 (180)
                      +|.+|+-   +++  |-.+..||.+.....    .+.....|+.|+.+.||+|+.++|-.+....++.  .+.+..+++|
T Consensus        11 lG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~~~~~~~g   90 (300)
T 3obb_A           11 LGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGLLAHIAPG   90 (300)
T ss_dssp             CSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSSTTSCCC-
T ss_pred             ehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhhhhcCCCC
Confidence            5777765   111  346677877765421    2345678999999999999999997766555542  2456779999


Q ss_pred             cEEEecCCCCccCHHHHHHHHhcCCcceEEeecC
Q psy5266          80 AILINTSRGGLLDQEALVEFLRDKKIGGAGLDVM  113 (180)
Q Consensus        80 ~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~  113 (180)
                      .++|+.+-...-+...+.+.+++..+.++-.+|+
T Consensus        91 ~iiId~sT~~p~~~~~~a~~~~~~G~~~lDaPVs  124 (300)
T 3obb_A           91 TLVLECSTIAPTSARKIHAAARERGLAMLDAPVS  124 (300)
T ss_dssp             CEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEE
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHcCCEEEecCCC
Confidence            9999999887777888999999888866655555

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=95.35  E-value=0.0023  Score=51.63  Aligned_cols=95  Identities=14%  Similarity=0.102  Sum_probs=64.2

Q ss_pred             cCCccccc-----eeeeEEEeccccccCC----ccceeeccCHHHHhccCCEEEEccCCCCCCcceeC--HhHHhccCCC
Q psy5266          11 TGTPGQVH-----LIVCVLIRYHVDLTGG----SKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIG--RKQFSLMKPT   79 (180)
Q Consensus        11 ~G~iG~~~-----~~~~~~~~~~~~~~~~----~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg--~~~i~~mk~g   79 (180)
                      .|.+|+.+     -.|..+..|+++....    ..+.....+++++++++|+|++++|-...+..++.  .+....++++
T Consensus        12 ~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~   91 (301)
T 3cky_A           12 LGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGVLSACKAG   91 (301)
T ss_dssp             CCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHSCTT
T ss_pred             ccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcchHhhcCCCC
Confidence            57788762     0134566777654321    11334567899999999999999996655555653  2445568899


Q ss_pred             cEEEecCCCCccCHHHHHHHHhcCCc
Q psy5266          80 AILINTSRGGLLDQEALVEFLRDKKI  105 (180)
Q Consensus        80 ~~lvn~~Rg~~vd~~al~~~L~~~~i  105 (180)
                      .++++++.+...+.+.+.+.+++..+
T Consensus        92 ~~vv~~~~~~~~~~~~l~~~~~~~g~  117 (301)
T 3cky_A           92 TVIVDMSSVSPSSTLKMAKVAAEKGI  117 (301)
T ss_dssp             CEEEECCCCCHHHHHHHHHHHHHTTC
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            99999988765567778888876444

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=94.31  E-value=0.0029  Score=48.86  Aligned_cols=74  Identities=18%  Similarity=0.197  Sum_probs=48.0

Q ss_pred             cCCccccceeeeEEEeccccccCCccc---------eeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcE
Q psy5266          11 TGTPGQVHLIVCVLIRYHVDLTGGSKQ---------VYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAI   81 (180)
Q Consensus        11 ~G~iG~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~   81 (180)
                      .|++|+.  ++..+...+.++..+.+.         -....+++++++++|+|++++|.. .+..++   .+..++++.+
T Consensus        27 ~G~mG~~--la~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~aDvVilav~~~-~~~~v~---~l~~~~~~~i  100 (201)
T 2yjz_A           27 TGDFGKS--LGLKMLQCGYSVVFGSRNPQVSSLLPRGAEVLCYSEAASRSDVIVLAVHRE-HYDFLA---ELADSLKGRV  100 (201)
Confidence            6888887  555443332222221110         112237888999999999999964 566776   2455677899


Q ss_pred             EEecCCCCc
Q psy5266          82 LINTSRGGL   90 (180)
Q Consensus        82 lvn~~Rg~~   90 (180)
                      +|++++|--
T Consensus       101 vI~~~~G~~  109 (201)
T 2yjz_A          101 LIDVSNNQK  109 (201)
Confidence            999998864

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=95.21  E-value=0.014  Score=48.05  Aligned_cols=119  Identities=13%  Similarity=0.047  Sum_probs=68.6

Q ss_pred             cCCccccc-----eeee--EEEeccccccCCc----cce--eeccCHHH-HhccCCEEEEccCCCCCCcceeCHhHHhcc
Q psy5266          11 TGTPGQVH-----LIVC--VLIRYHVDLTGGS----KQV--YLILVIRT-RSAQSDFIFVTCALTKDTEQLIGRKQFSLM   76 (180)
Q Consensus        11 ~G~iG~~~-----~~~~--~~~~~~~~~~~~~----~~~--~~~~~l~~-l~~~~D~v~~h~pl~~~T~glIg~~~i~~m   76 (180)
                      +|.||+..     --|.  .+..||++.....    .+.  ....++++ ++++||+|++++|... +..++ .+....+
T Consensus        41 ~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~~~-~~~vl-~~l~~~l  118 (314)
T 3ggo_A           41 VGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRT-FREIA-KKLSYIL  118 (314)
T ss_dssp             CSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCGGG-HHHHH-HHHHHHS
T ss_pred             eCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCHHH-HHHHH-HHHhhcc
Confidence            57777751     0123  6777777653211    111  23467888 8999999999999653 34444 3445568


Q ss_pred             CCCcEEEecCCCCccCHHHHHHHHhcCCcceEEeecCCCC---CCCCCCCCCCCCceeec
Q psy5266          77 KPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPE---PLPADHPLVQLDNCGNG  133 (180)
Q Consensus        77 k~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~e---p~~~~~~l~~~~Nv~~g  133 (180)
                      ++++++++++.......+.+.+.+.. .+.+ .-+++-.+   |......|+.-..++.+
T Consensus       119 ~~~~iv~d~~Svk~~~~~~~~~~l~~-~~v~-~hPm~G~e~sG~~~A~~~Lf~g~~~il~  176 (314)
T 3ggo_A          119 SEDATVTDQGSVKGKLVYDLENILGK-RFVG-GHPIAGTEKSGVEYSLDNLYEGKKVILT  176 (314)
T ss_dssp             CTTCEEEECCSCCTHHHHHHHHHHGG-GEEC-EEECCCCCCCSGGGCCTTTTTTCEEEEC
T ss_pred             CCCcEEEECCCCcHHHHHHHHHhcCC-CEEe-cCcccCCcccchhhhhhhhhcCCEEEEE
Confidence            99999999876544445667777755 3321 23444322   11123345555555554

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=95.13  E-value=0.018  Score=50.38  Aligned_cols=103  Identities=16%  Similarity=0.106  Sum_probs=73.7

Q ss_pred             cCCccccc-----eeeeEEEeccccccCCc---------cceeeccCHHHHhc---cCCEEEEccCCCCCCcceeCHhHH
Q psy5266          11 TGTPGQVH-----LIVCVLIRYHVDLTGGS---------KQVYLILVIRTRSA---QSDFIFVTCALTKDTEQLIGRKQF   73 (180)
Q Consensus        11 ~G~iG~~~-----~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~l~~---~~D~v~~h~pl~~~T~glIg~~~i   73 (180)
                      +|.+|+..     --|..+..||++.....         .......+++++.+   .+|+|++++|-...+..++ .+..
T Consensus        12 lG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~vl-~~l~   90 (484)
T 4gwg_A           12 LAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVDDFI-EKLV   90 (484)
T ss_dssp             CSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHHHHHH-HHHG
T ss_pred             hhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHHHHHH-HHHH
Confidence            56666651     01346778877754311         01234578999987   4999999999876777777 5666


Q ss_pred             hccCCCcEEEecCCCCccCHHHHHHHHhcCCcceEEeecCC
Q psy5266          74 SLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMI  114 (180)
Q Consensus        74 ~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~  114 (180)
                      ..|++|.++|+.+.+...+...+.+.+++..+.....+|+-
T Consensus        91 ~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsG  131 (484)
T 4gwg_A           91 PLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSG  131 (484)
T ss_dssp             GGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred             HhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccC
Confidence            78999999999999988787888888887777666666653

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=95.04  E-value=0.028  Score=46.17  Aligned_cols=89  Identities=12%  Similarity=-0.013  Sum_probs=63.4

Q ss_pred             eEEEecccccc------CCc-----cceeecc-CHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCC
Q psy5266          22 CVLIRYHVDLT------GGS-----KQVYLIL-VIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGG   89 (180)
Q Consensus        22 ~~~~~~~~~~~------~~~-----~~~~~~~-~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~   89 (180)
                      ..+..||.+..      ...     .+.  .. ++++++++||+|++++|-......+  .+....++++.++|+++...
T Consensus        49 ~~V~~~dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~~~~aDvVi~avp~~~~~~~~--~~i~~~l~~~~ivv~~st~~  124 (317)
T 4ezb_A           49 ARLAAYDLRFNDPAASGALRARAAELGV--EPLDDVAGIACADVVLSLVVGAATKAVA--ASAAPHLSDEAVFIDLNSVG  124 (317)
T ss_dssp             SEEEEECGGGGCTTTHHHHHHHHHHTTC--EEESSGGGGGGCSEEEECCCGGGHHHHH--HHHGGGCCTTCEEEECCSCC
T ss_pred             CeEEEEeCCCccccchHHHHHHHHHCCC--CCCCHHHHHhcCCEEEEecCCHHHHHHH--HHHHhhcCCCCEEEECCCCC
Confidence            57778887752      000     112  45 8899999999999999976544433  55566789999999999877


Q ss_pred             ccCHHHHHHHHhcCCcceEEeecCC
Q psy5266          90 LLDQEALVEFLRDKKIGGAGLDVMI  114 (180)
Q Consensus        90 ~vd~~al~~~L~~~~i~~~~lDv~~  114 (180)
                      ......+.+.+++..+.....+|+-
T Consensus       125 p~~~~~~~~~l~~~g~~~~d~pv~g  149 (317)
T 4ezb_A          125 PDTKALAAGAIATGKGSFVEGAVMA  149 (317)
T ss_dssp             HHHHHHHHHHHHTSSCEEEEEEECS
T ss_pred             HHHHHHHHHHHHHcCCeEEeccCCC
Confidence            7778888888887655544445654

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=94.82  E-value=0.0075  Score=52.45  Aligned_cols=102  Identities=16%  Similarity=0.094  Sum_probs=67.9

Q ss_pred             cCCccccc-----eeeeEEEeccccccC---Ccc-----ceeeccCHHHHhcc---CCEEEEccCCCCCCcceeCHhHHh
Q psy5266          11 TGTPGQVH-----LIVCVLIRYHVDLTG---GSK-----QVYLILVIRTRSAQ---SDFIFVTCALTKDTEQLIGRKQFS   74 (180)
Q Consensus        11 ~G~iG~~~-----~~~~~~~~~~~~~~~---~~~-----~~~~~~~l~~l~~~---~D~v~~h~pl~~~T~glIg~~~i~   74 (180)
                      .|.+|+.+     --|..+..|+++...   ..+     +.....+++++++.   +|+|++++|-...+..++ .+...
T Consensus        13 ~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~vl-~~l~~   91 (474)
T 2iz1_A           13 MAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDATI-KSLLP   91 (474)
T ss_dssp             CSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHHH-HHHGG
T ss_pred             eHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHHH-HHHHh
Confidence            56666651     013356677765432   111     34456789999876   999999999766666666 34455


Q ss_pred             ccCCCcEEEecCCCCccCHHHHHHHHhcCCcceEEeecC
Q psy5266          75 LMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVM  113 (180)
Q Consensus        75 ~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~  113 (180)
                      .+++|.++|+++.+...+...+.+.+++..+.....+++
T Consensus        92 ~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv~  130 (474)
T 2iz1_A           92 LLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVS  130 (474)
T ss_dssp             GCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEEC
T ss_pred             hCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCCC
Confidence            688899999998876666677778777655544444554

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=94.73  E-value=0.028  Score=47.81  Aligned_cols=90  Identities=11%  Similarity=0.130  Sum_probs=58.9

Q ss_pred             cCCcccc-----ceeee-EEEeccccccC---Ccc----ceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhc--
Q psy5266          11 TGTPGQV-----HLIVC-VLIRYHVDLTG---GSK----QVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSL--   75 (180)
Q Consensus        11 ~G~iG~~-----~~~~~-~~~~~~~~~~~---~~~----~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~--   75 (180)
                      .|.||+.     +.+|+ ++..++++...   ...    ......++.++++.+|+|+.+.|   .+..+++...+..  
T Consensus       175 aG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~---~~~~~~~~~~l~~~~  251 (404)
T 1gpj_A          175 AGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATA---APHPVIHVDDVREAL  251 (404)
T ss_dssp             CCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCS---SSSCCBCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccC---CCCceecHHHHHHHH
Confidence            5666664     23576 78888876532   111    12234678899999999999976   5667788888887  


Q ss_pred             cC----CCcEEEecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceee
Q psy5266          76 MK----PTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGN  132 (180)
Q Consensus        76 mk----~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~  132 (180)
                      ||    ++.++++++                             +|.+.+.++++++||..
T Consensus       252 lk~r~~~~~v~vdia-----------------------------~P~~i~~~l~~l~~v~l  283 (404)
T 1gpj_A          252 RKRDRRSPILIIDIA-----------------------------NPRDVEEGVENIEDVEV  283 (404)
T ss_dssp             HHCSSCCCEEEEECC-----------------------------SSCSBCTTGGGSTTEEE
T ss_pred             HhccCCCCEEEEEcc-----------------------------CCCCCCccccccCCeEE
Confidence            43    345555543                             35444677888888876

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=94.72  E-value=0.011  Score=51.95  Aligned_cols=83  Identities=18%  Similarity=0.187  Sum_probs=58.7

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCC---ccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGG---SKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL   82 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~l   82 (180)
                      .|.||+.     ..+|+++..+|++....   ........+++++++.+|+++.+    ..+.++|+.+.+.+||+++++
T Consensus       273 aGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv~~lee~~~~aDvVi~a----tG~~~vl~~e~l~~mk~gaiV  348 (488)
T 3ond_A          273 YGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQVLTLEDVVSEADIFVTT----TGNKDIIMLDHMKKMKNNAIV  348 (488)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGTTTTCSEEEEC----SSCSCSBCHHHHTTSCTTEEE
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCccCCHHHHHHhcCEEEeC----CCChhhhhHHHHHhcCCCeEE
Confidence            3566664     23677888877764321   11123567899999999999864    357889999999999999999


Q ss_pred             EecCCCC-ccCHHHHH
Q psy5266          83 INTSRGG-LLDQEALV   97 (180)
Q Consensus        83 vn~~Rg~-~vd~~al~   97 (180)
                      +|++++. -++...+.
T Consensus       349 vNaG~~~~Ei~~~~l~  364 (488)
T 3ond_A          349 CNIGHFDNEIDMLGLE  364 (488)
T ss_dssp             EESSSTTTTBTHHHHH
T ss_pred             EEcCCCCcccchHHHH
Confidence            9999973 24444444

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=94.29  E-value=0.0067  Score=48.43  Aligned_cols=92  Identities=14%  Similarity=0.174  Sum_probs=59.6

Q ss_pred             cCCccccc-----eeeeEEEeccccccCCc----cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcE
Q psy5266          11 TGTPGQVH-----LIVCVLIRYHVDLTGGS----KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAI   81 (180)
Q Consensus        11 ~G~iG~~~-----~~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~   81 (180)
                      .|.+|+.+     - |..+..|+++.....    .+..... ++++++++|+|++++|-...+..++ .+....++++.+
T Consensus         9 ~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~-~~l~~~l~~~~~   85 (289)
T 2cvz_A            9 LGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTTREVYEVA-EALYPYLREGTY   85 (289)
T ss_dssp             CSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSHHHHHHHH-HHHTTTCCTTEE
T ss_pred             ccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccC-HHHHHhCCCEEEEeCCChHHHHHHH-HHHHhhCCCCCE
Confidence            57777761     1 345556665433210    0112223 7788899999999999665455555 344456888999


Q ss_pred             EEecCCCCccCHHHHHHHHhcCCc
Q psy5266          82 LINTSRGGLLDQEALVEFLRDKKI  105 (180)
Q Consensus        82 lvn~~Rg~~vd~~al~~~L~~~~i  105 (180)
                      +++++.+...+.+.+.+.+++..+
T Consensus        86 vv~~s~~~~~~~~~l~~~~~~~g~  109 (289)
T 2cvz_A           86 WVDATSGEPEASRRLAERLREKGV  109 (289)
T ss_dssp             EEECSCCCHHHHHHHHHHHHTTTE
T ss_pred             EEECCCCCHHHHHHHHHHHHHcCC
Confidence            999988776677788888876543

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=94.24  E-value=0.012  Score=51.53  Aligned_cols=102  Identities=17%  Similarity=0.112  Sum_probs=68.7

Q ss_pred             cCCccccc---e--eeeEEEeccccccCC---c------cceeeccCHHHHhcc---CCEEEEccCCCCCCcceeCHhHH
Q psy5266          11 TGTPGQVH---L--IVCVLIRYHVDLTGG---S------KQVYLILVIRTRSAQ---SDFIFVTCALTKDTEQLIGRKQF   73 (180)
Q Consensus        11 ~G~iG~~~---~--~~~~~~~~~~~~~~~---~------~~~~~~~~l~~l~~~---~D~v~~h~pl~~~T~glIg~~~i   73 (180)
                      +|.+|+..   +  -|..+..|+++....   .      .+.....+++++++.   +|+|++++|-...+..++ .+..
T Consensus        18 lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~vl-~~l~   96 (497)
T 2p4q_A           18 LAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVDALI-NQIV   96 (497)
T ss_dssp             CSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHHHHHH-HHHG
T ss_pred             eHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHHHHH-HHHH
Confidence            56666641   0  133566777654321   1      134456789999887   999999999766677777 4555


Q ss_pred             hccCCCcEEEecCCCCccCHHHHHHHHhcCCcceEEeecC
Q psy5266          74 SLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVM  113 (180)
Q Consensus        74 ~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~  113 (180)
                      ..+++|.++|+++.+...+...+.+.+++..+.....+|+
T Consensus        97 ~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVs  136 (497)
T 2p4q_A           97 PLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVS  136 (497)
T ss_dssp             GGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             HhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCCcc
Confidence            6788999999998877666677888887755544444544

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=94.04  E-value=0.0085  Score=48.13  Aligned_cols=92  Identities=14%  Similarity=0.064  Sum_probs=58.4

Q ss_pred             cCCccccc-----eeeeEEEeccccccCC----ccceeeccCHHHHhccCCEEEEccCCCCCCcceeCH--hHHhccCCC
Q psy5266          11 TGTPGQVH-----LIVCVLIRYHVDLTGG----SKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGR--KQFSLMKPT   79 (180)
Q Consensus        11 ~G~iG~~~-----~~~~~~~~~~~~~~~~----~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~--~~i~~mk~g   79 (180)
                      .|.+|+.+     -.|..+..|+++....    ..+.....+++++++++|+|++++|-...+..++..  ..+..++++
T Consensus         8 ~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~~~~l~~~   87 (296)
T 2gf2_A            8 LGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKG   87 (296)
T ss_dssp             CSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSGGGTCCTT
T ss_pred             ccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhHHhcCCCC
Confidence            57777752     0134566776654321    112334568999999999999999866555555432  234467889


Q ss_pred             cEEEecCCCCccCHHHHHHHHhc
Q psy5266          80 AILINTSRGGLLDQEALVEFLRD  102 (180)
Q Consensus        80 ~~lvn~~Rg~~vd~~al~~~L~~  102 (180)
                      .++|+.+....-+...+.+.+.+
T Consensus        88 ~~vv~~s~~~~~~~~~~~~~~~~  110 (296)
T 2gf2_A           88 SLLIDSSTIDPAVSKELAKEVEK  110 (296)
T ss_dssp             CEEEECSCCCHHHHHHHHHHHHH
T ss_pred             CEEEECCCCCHHHHHHHHHHHHH
Confidence            99999766555445556666654

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=93.80  E-value=0.016  Score=50.40  Aligned_cols=75  Identities=13%  Similarity=0.148  Sum_probs=55.0

Q ss_pred             eeeccCHHHHhcc---CCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccCHHHHHHHHhcCCcceEEeecC
Q psy5266          38 VYLILVIRTRSAQ---SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVM  113 (180)
Q Consensus        38 ~~~~~~l~~l~~~---~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~  113 (180)
                      .....+++++++.   +|+|++++|-...+..++ .+....+++|.++|+.+.+...+...+.+.+++..+.....+++
T Consensus        53 i~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~vl-~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~  130 (478)
T 1pgj_A           53 LKAFETMEAFAASLKKPRKALILVQAGAATDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGIS  130 (478)
T ss_dssp             EEECSCHHHHHHHBCSSCEEEECCCCSHHHHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEE
T ss_pred             eEEECCHHHHHhcccCCCEEEEecCChHHHHHHH-HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeecc
Confidence            4456789998874   999999999765666666 34455688899999998877666677888887755544444554

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=93.58  E-value=0.012  Score=47.91  Aligned_cols=56  Identities=14%  Similarity=0.159  Sum_probs=38.9

Q ss_pred             cCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccCHHHHHHH
Q psy5266          42 LVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEF   99 (180)
Q Consensus        42 ~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~   99 (180)
                      .++++.+++||+|++++|... +..++. +....+++++++++++.......+.+.+.
T Consensus        57 ~~~~~~~~~aDvVilavp~~~-~~~vl~-~l~~~l~~~~iv~~~~svk~~~~~~~~~~  112 (298)
T 2pv7_A           57 AVAESILANADVVIVSVPINL-TLETIE-RLKPYLTENMLLADLTSVKREPLAKMLEV  112 (298)
T ss_dssp             GGHHHHHTTCSEEEECSCGGG-HHHHHH-HHGGGCCTTSEEEECCSCCHHHHHHHHHH
T ss_pred             cCHHHHhcCCCEEEEeCCHHH-HHHHHH-HHHhhcCCCcEEEECCCCCcHHHHHHHHh
Confidence            368889999999999999654 666663 33445888999999876543333444443

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=92.75  E-value=0.24  Score=39.27  Aligned_cols=79  Identities=11%  Similarity=0.093  Sum_probs=53.2

Q ss_pred             EEEeccccccCCc----cce--eeccCHHHHhc-cCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccCHHH
Q psy5266          23 VLIRYHVDLTGGS----KQV--YLILVIRTRSA-QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEA   95 (180)
Q Consensus        23 ~~~~~~~~~~~~~----~~~--~~~~~l~~l~~-~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~a   95 (180)
                      .+..||++.....    .+.  ....++++.++ +||+|++++|.. .+..++. +....++++.++++++.......+.
T Consensus        28 ~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~-~~~~v~~-~l~~~l~~~~iv~~~~~~~~~~~~~  105 (281)
T 2g5c_A           28 KIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFREIAK-KLSYILSEDATVTDQGSVKGKLVYD  105 (281)
T ss_dssp             EEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH-HHHHHHH-HHHHHSCTTCEEEECCSCCTHHHHH
T ss_pred             EEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHH-HHHHHHH-HHHhhCCCCcEEEECCCCcHHHHHH
Confidence            6777776543210    011  12457888999 999999999965 4445553 3445688999999988776555677


Q ss_pred             HHHHHhcC
Q psy5266          96 LVEFLRDK  103 (180)
Q Consensus        96 l~~~L~~~  103 (180)
                      +.+.+.++
T Consensus       106 l~~~l~~~  113 (281)
T 2g5c_A          106 LENILGKR  113 (281)
T ss_dssp             HHHHHGGG
T ss_pred             HHHhcccc
Confidence            88888764

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=92.53  E-value=0.062  Score=43.53  Aligned_cols=97  Identities=10%  Similarity=0.018  Sum_probs=61.9

Q ss_pred             cCCccccc-----eeeeEEEeccccccCCc----cceeeccCHHHHhccCCEEEEccCCCCCCcceeCH--hHHhccCCC
Q psy5266          11 TGTPGQVH-----LIVCVLIRYHVDLTGGS----KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGR--KQFSLMKPT   79 (180)
Q Consensus        11 ~G~iG~~~-----~~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~--~~i~~mk~g   79 (180)
                      .|.+|+.+     -.|..+..|+++.....    .+.....++++.++++|+|++++|....+..++..  +.+..++++
T Consensus        38 ~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~~~~~l~~~  117 (316)
T 2uyy_A           38 LGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPG  117 (316)
T ss_dssp             CSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCTT
T ss_pred             ccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchhHhhcCCCC
Confidence            56677651     01345667776543211    12234568999999999999999965444444432  234568889


Q ss_pred             cEEEecCCCCccCHHHHHHHHhcCCcce
Q psy5266          80 AILINTSRGGLLDQEALVEFLRDKKIGG  107 (180)
Q Consensus        80 ~~lvn~~Rg~~vd~~al~~~L~~~~i~~  107 (180)
                      ..+|+++.+.....+.+.+.+.+..+..
T Consensus       118 ~~vv~~s~~~~~~~~~l~~~~~~~~~~~  145 (316)
T 2uyy_A          118 KCYVDMSTVDADTVTELAQVIVSRGGRF  145 (316)
T ss_dssp             CEEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHcCCEE
Confidence            9999998766555677778776544433

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=92.34  E-value=0.15  Score=44.02  Aligned_cols=65  Identities=12%  Similarity=0.148  Sum_probs=46.0

Q ss_pred             eccCHHHHhccCCEEEEccCCCCCCccee-----------C--HhHHhccCCCcEEEecCCCCccCHHHHHHHHhcCC
Q psy5266          40 LILVIRTRSAQSDFIFVTCALTKDTEQLI-----------G--RKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKK  104 (180)
Q Consensus        40 ~~~~l~~l~~~~D~v~~h~pl~~~T~glI-----------g--~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~  104 (180)
                      ...++++.++.||+|++++|-.....+.+           .  ......|+++.++|+.+....-..+.+.+.+++..
T Consensus        72 ~t~~~~e~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~  149 (467)
T 2q3e_A           72 FSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANT  149 (467)
T ss_dssp             EESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTC
T ss_pred             EECCHHHHHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhC
Confidence            34678889999999999998544333321           1  12334589999999998776666777888887753

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=90.58  E-value=0.014  Score=48.50  Aligned_cols=73  Identities=14%  Similarity=0.048  Sum_probs=45.6

Q ss_pred             cCCccccc-----eeeeEEEeccccccC-C--c--cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCc
Q psy5266          11 TGTPGQVH-----LIVCVLIRYHVDLTG-G--S--KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTA   80 (180)
Q Consensus        11 ~G~iG~~~-----~~~~~~~~~~~~~~~-~--~--~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~   80 (180)
                      .|.||+.+     -.|..+..|+++... .  .  .+. ...++++.+++||+|++++|... ...++..+....|++++
T Consensus        24 ~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~-~~~~~~e~~~~aDvVilavp~~~-~~~v~~~~i~~~l~~~~  101 (338)
T 1np3_A           24 YGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGL-KVADVKTAVAAADVVMILTPDEF-QGRLYKEEIEPNLKKGA  101 (338)
T ss_dssp             CSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTC-EEECHHHHHHTCSEEEECSCHHH-HHHHHHHHTGGGCCTTC
T ss_pred             chHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCC-EEccHHHHHhcCCEEEEeCCcHH-HHHHHHHHHHhhCCCCC
Confidence            67777762     123455666665432 0  0  112 22388999999999999999653 24555434445688999


Q ss_pred             EEEec
Q psy5266          81 ILINT   85 (180)
Q Consensus        81 ~lvn~   85 (180)
                      +++.+
T Consensus       102 ivi~~  106 (338)
T 1np3_A          102 TLAFA  106 (338)
T ss_dssp             EEEES
T ss_pred             EEEEc
Confidence            99865

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=90.20  E-value=0.76  Score=36.65  Aligned_cols=72  Identities=15%  Similarity=0.060  Sum_probs=50.1

Q ss_pred             eeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccCHHHHHHHHhcCCcceEEeecC
Q psy5266          39 YLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVM  113 (180)
Q Consensus        39 ~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~  113 (180)
                      ....++++.+++||+|+.++|-+.+....+-.+....+++++++++...+  +...++.+.+.... ..+++..+
T Consensus        74 ~~~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~--~~~~~la~~~~~~~-~~ig~h~~  145 (283)
T 4e12_A           74 RYSDDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSST--LLPSDLVGYTGRGD-KFLALHFA  145 (283)
T ss_dssp             EEESCHHHHTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHHHHSCGG-GEEEEEEC
T ss_pred             EEeCCHHHHhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCCCc-ceEEEccC
Confidence            34578999999999999999977555555555666679999999844333  35677777775433 44555555

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=89.75  E-value=0.14  Score=43.05  Aligned_cols=88  Identities=10%  Similarity=0.098  Sum_probs=60.5

Q ss_pred             cCCcccc-----ceeeeEEEeccccccC---Cccc-eeeccCHHHHhc-cCCEEEEccCCCCCCcceeCHhHHhccCCCc
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTG---GSKQ-VYLILVIRTRSA-QSDFIFVTCALTKDTEQLIGRKQFSLMKPTA   80 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~---~~~~-~~~~~~l~~l~~-~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~   80 (180)
                      .|++|+.     +-+|++++.+|.+...   +.+. -....+.++++. +||+++.+     .+.++|+.+.+++|+ ..
T Consensus       181 ~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v~~~~ll~~~~DIvip~-----a~~~~I~~~~~~~lg-~~  254 (364)
T 1leh_A          181 LGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPC-----ALGAVLNDFTIPQLK-AK  254 (364)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGTTTCCCSEEEEC-----SCSCCBSTTHHHHCC-CS
T ss_pred             chHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEChHHHhccCCcEeecc-----chHHHhCHHHHHhCC-Cc
Confidence            4666664     3467888888877542   1111 123456778777 99999876     477899999999985 45


Q ss_pred             EEEecCCCCccCHHHHHHHHhcCCc
Q psy5266          81 ILINTSRGGLLDQEALVEFLRDKKI  105 (180)
Q Consensus        81 ~lvn~~Rg~~vd~~al~~~L~~~~i  105 (180)
                      ++++.+++.+.++++ .+.|++..+
T Consensus       255 iV~e~An~p~t~~ea-~~~L~~~Gi  278 (364)
T 1leh_A          255 VIAGSADNQLKDPRH-GKYLHELGI  278 (364)
T ss_dssp             EECCSCSCCBSSHHH-HHHHHHHTC
T ss_pred             EEEeCCCCCcccHHH-HHHHHhCCC
Confidence            888999998887664 455665555

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=89.57  E-value=0.41  Score=41.48  Aligned_cols=102  Identities=17%  Similarity=0.099  Sum_probs=67.1

Q ss_pred             cCCccccc-----eeeeEEEeccccccC---Cc------cceeeccCHHHHhc---cCCEEEEccCCCCCCcceeCHhHH
Q psy5266          11 TGTPGQVH-----LIVCVLIRYHVDLTG---GS------KQVYLILVIRTRSA---QSDFIFVTCALTKDTEQLIGRKQF   73 (180)
Q Consensus        11 ~G~iG~~~-----~~~~~~~~~~~~~~~---~~------~~~~~~~~l~~l~~---~~D~v~~h~pl~~~T~glIg~~~i   73 (180)
                      .|.+|+.+     --|..+..|+++...   ..      .+.....+++++++   .+|+|++++|-...+..++. +..
T Consensus        10 ~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~vl~-~l~   88 (482)
T 2pgd_A           10 LAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDNFIE-KLV   88 (482)
T ss_dssp             CSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHHHHH-HHH
T ss_pred             hHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHHHHH-HHH
Confidence            46666651     013356677765432   11      22345678999874   89999999997656666663 445


Q ss_pred             hccCCCcEEEecCCCCccCHHHHHHHHhcCCcceEEeecC
Q psy5266          74 SLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVM  113 (180)
Q Consensus        74 ~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~  113 (180)
                      ..+++|.++|+.+.+...+...+.+.+++..+.....+++
T Consensus        89 ~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~  128 (482)
T 2pgd_A           89 PLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVS  128 (482)
T ss_dssp             HHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             hhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCC
Confidence            5688899999988877666667777787655544445554

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=87.50  E-value=2.1  Score=30.13  Aligned_cols=85  Identities=11%  Similarity=0.135  Sum_probs=53.5

Q ss_pred             cCCccccc-----eeeeEEEeccccccCC---cc----ceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCC
Q psy5266          11 TGTPGQVH-----LIVCVLIRYHVDLTGG---SK----QVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKP   78 (180)
Q Consensus        11 ~G~iG~~~-----~~~~~~~~~~~~~~~~---~~----~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~   78 (180)
                      +|.+|+.+     -.|..+..++++....   .+    ......++++.++++|+|+.+.|..   ..++..   ..+++
T Consensus        29 ~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~---~~~~~~---~~l~~  102 (144)
T 3oj0_A           29 NGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSK---TPIVEE---RSLMP  102 (144)
T ss_dssp             CSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCS---SCSBCG---GGCCT
T ss_pred             CCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCC---CcEeeH---HHcCC
Confidence            56677652     1234456666554321   11    1235678999999999999998855   345554   45778


Q ss_pred             CcEEEecCCCC-------ccCHHHHHHHHh
Q psy5266          79 TAILINTSRGG-------LLDQEALVEFLR  101 (180)
Q Consensus        79 g~~lvn~~Rg~-------~vd~~al~~~L~  101 (180)
                      |..+++.+...       +++.+++.+.++
T Consensus       103 g~~vid~~~p~~~~~~~~~~~~d~l~~~~~  132 (144)
T 3oj0_A          103 GKLFIDLGNPPNIERGNNVITLDEIYEISK  132 (144)
T ss_dssp             TCEEEECCSSCSBCCSTTSEEHHHHHHHHH
T ss_pred             CCEEEEccCCccCCCCCEEEeHHHHHHHHH
Confidence            99999887642       345666666554

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=86.68  E-value=1.7  Score=37.33  Aligned_cols=64  Identities=6%  Similarity=0.135  Sum_probs=40.6

Q ss_pred             eeccCHHHHhccCCEEEEccCCCCCC-cceeC--------HhHHhccCCCcEEEecCCCCccCHHHHHHHHhc
Q psy5266          39 YLILVIRTRSAQSDFIFVTCALTKDT-EQLIG--------RKQFSLMKPTAILINTSRGGLLDQEALVEFLRD  102 (180)
Q Consensus        39 ~~~~~l~~l~~~~D~v~~h~pl~~~T-~glIg--------~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~  102 (180)
                      ....++++.++.||+|++++|-.... .|-.|        .+....|++|.++|+.+--..-..+.+.+.+++
T Consensus        73 ~~ttd~~ea~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e  145 (446)
T 4a7p_A           73 SFTTDLAEGVKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGDEVERIIAE  145 (446)
T ss_dssp             EEESCHHHHHTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEECCHHHHHhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHH
Confidence            34568999999999999998844321 22222        233446899999999873222234455555544

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=85.92  E-value=0.93  Score=35.91  Aligned_cols=90  Identities=17%  Similarity=0.168  Sum_probs=56.9

Q ss_pred             cCCccccc-------eeeeEEEeccccccCCc----cce--eeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhc-c
Q psy5266          11 TGTPGQVH-------LIVCVLIRYHVDLTGGS----KQV--YLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSL-M   76 (180)
Q Consensus        11 ~G~iG~~~-------~~~~~~~~~~~~~~~~~----~~~--~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~-m   76 (180)
                      .|.+|+.+       +.+..+..||++.....    .+.  ....++++.+++||+|++++|-.. ...++. +.... +
T Consensus        14 ~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~~-~~~v~~-~l~~~~l   91 (290)
T 3b1f_A           14 LGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIKK-TIDFIK-ILADLDL   91 (290)
T ss_dssp             CSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHHH-HHHHHH-HHHTSCC
T ss_pred             eCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHHH-HHHHHH-HHHhcCC
Confidence            56666651       22456777776543211    111  234578888999999999999543 244442 23345 7


Q ss_pred             CCCcEEEecCCCCccCHHHHHHHHhc
Q psy5266          77 KPTAILINTSRGGLLDQEALVEFLRD  102 (180)
Q Consensus        77 k~g~~lvn~~Rg~~vd~~al~~~L~~  102 (180)
                      +++.++++++.......+.+.+.+.+
T Consensus        92 ~~~~ivi~~~~~~~~~~~~l~~~l~~  117 (290)
T 3b1f_A           92 KEDVIITDAGSTKYEIVRAAEYYLKD  117 (290)
T ss_dssp             CTTCEEECCCSCHHHHHHHHHHHHTT
T ss_pred             CCCCEEEECCCCchHHHHHHHHhccc
Confidence            88999998877655455778888775

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=85.59  E-value=0.33  Score=40.72  Aligned_cols=102  Identities=12%  Similarity=0.107  Sum_probs=57.2

Q ss_pred             CCCCCcceeCHhHHhc-----cCC-CcEEEecCCCC------------cc-----CHHHHHHHHhcCCcceEEeecCCCC
Q psy5266          60 LTKDTEQLIGRKQFSL-----MKP-TAILINTSRGG------------LL-----DQEALVEFLRDKKIGGAGLDVMIPE  116 (180)
Q Consensus        60 l~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~------------~v-----d~~al~~~L~~~~i~~~~lDv~~~e  116 (180)
                      +.++|.++||.+.+++     ++. |+.++-+.|..            -+     +.+++.+.++..|++..+..    .
T Consensus       166 l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~----~  241 (377)
T 2vhw_A          166 VEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVL----V  241 (377)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCC----C
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCC----c
Confidence            5678999999998886     444 66665554421            01     35678888888898433221    1


Q ss_pred             CCCCCCCCCCCCceeecccCHHHHHHHHHc-ccccccccc---CCCC-CCCCCCCCcccCCcEEE
Q psy5266         117 PLPADHPLVQLDNCGNGLLDQEALVEFLRD-KKIGGAGLD---VMIP-EPMPADHPLVQLDNCEI  176 (180)
Q Consensus       117 p~~~~~~l~~~~Nv~~g~~~~~al~~~L~~-g~l~ga~ld---V~~~-Eplp~~~pl~~~~nv~i  176 (180)
                      |...+..++          +.+.+ +.++. +.+...+.|   |++. ||++.++|+|.++||.+
T Consensus       242 p~~~t~~li----------~~~~l-~~mk~g~~iV~va~~~Ggv~e~~ep~~~~~~~~~~~~v~i  295 (377)
T 2vhw_A          242 PGAKAPKLV----------SNSLV-AHMKPGAVLVDIAIDQGGCFEGSRPTTYDHPTFAVHDTLF  295 (377)
T ss_dssp             TTSCCCCCB----------CHHHH-TTSCTTCEEEEGGGGTTCSBTTCCCBCSSSCEEEETTEEE
T ss_pred             CCCCCccee----------cHHHH-hcCCCCcEEEEEecCCCCccccccCCCCCCCEEEECCEEE
Confidence            211111121          22221 22221 222222211   5555 88888999999999985

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=85.06  E-value=0.91  Score=38.34  Aligned_cols=97  Identities=14%  Similarity=0.281  Sum_probs=55.2

Q ss_pred             CCCCCcceeCHhHHhc-----cCC-Cc-EEEecCCCC-------------ccCHHHHHHHHhcCCcceEEeecCCCCCCC
Q psy5266          60 LTKDTEQLIGRKQFSL-----MKP-TA-ILINTSRGG-------------LLDQEALVEFLRDKKIGGAGLDVMIPEPLP  119 (180)
Q Consensus        60 l~~~T~glIg~~~i~~-----mk~-g~-~lvn~~Rg~-------------~vd~~al~~~L~~~~i~~~~lDv~~~ep~~  119 (180)
                      +.+++.++||.+.+++     ++. |+ .++-++|..             .++.+++.+.+...|+      |+...|. 
T Consensus       165 l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDv------Vi~at~~-  237 (404)
T 1gpj_A          165 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDV------VVSATAA-  237 (404)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSE------EEECCSS-
T ss_pred             ccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCE------EEEccCC-
Confidence            5678999999988876     444 65 565555532             1223345566666666      3322221 


Q ss_pred             CCCCCCCCCceeecccCHHHHHH-HHHccccc-cccccCCCCCCCCCCCCcccCCcEEE
Q psy5266         120 ADHPLVQLDNCGNGLLDQEALVE-FLRDKKIG-GAGLDVMIPEPMPADHPLVQLDNCEI  176 (180)
Q Consensus       120 ~~~~l~~~~Nv~~g~~~~~al~~-~L~~g~l~-ga~ldV~~~Eplp~~~pl~~~~nv~i  176 (180)
                       +.+          ..+.+.+.. .++..+-+ -..+|+..  |.+.+.+++++|||++
T Consensus       238 -~~~----------~~~~~~l~~~~lk~r~~~~~v~vdia~--P~~i~~~l~~l~~v~l  283 (404)
T 1gpj_A          238 -PHP----------VIHVDDVREALRKRDRRSPILIIDIAN--PRDVEEGVENIEDVEV  283 (404)
T ss_dssp             -SSC----------CBCHHHHHHHHHHCSSCCCEEEEECCS--SCSBCTTGGGSTTEEE
T ss_pred             -CCc----------eecHHHHHHHHHhccCCCCEEEEEccC--CCCCCccccccCCeEE
Confidence             111          234455544 35421111 23577754  6566789999999987

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=84.88  E-value=0.041  Score=42.34  Aligned_cols=41  Identities=7%  Similarity=0.113  Sum_probs=29.7

Q ss_pred             HhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCc
Q psy5266          47 RSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGL   90 (180)
Q Consensus        47 l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~   90 (180)
                      .+++||+|++++| ...+..++. +....++ +.++++++.|--
T Consensus        54 ~~~~aD~vi~av~-~~~~~~v~~-~l~~~~~-~~~vi~~~~g~~   94 (209)
T 2raf_A           54 ATTLGEIVIMAVP-YPALAALAK-QYATQLK-GKIVVDITNPLN   94 (209)
T ss_dssp             CSSCCSEEEECSC-HHHHHHHHH-HTHHHHT-TSEEEECCCCBC
T ss_pred             HhccCCEEEEcCC-cHHHHHHHH-HHHHhcC-CCEEEEECCCCC
Confidence            5789999999999 555555554 2233577 899999988643

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=84.75  E-value=0.079  Score=46.49  Aligned_cols=105  Identities=14%  Similarity=0.090  Sum_probs=62.8

Q ss_pred             CCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCcc---------CHHHHHHHHhcCCcceEEeecCCCCCCCCCCC
Q psy5266          59 ALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGLL---------DQEALVEFLRDKKIGGAGLDVMIPEPLPADHP  123 (180)
Q Consensus        59 pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~v---------d~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~  123 (180)
                      .+.++|.+++|.+.+++     +|. |+.++-+.|...-         +..++.++++.+|++..+      .+   +..
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~~~l~e~l~~aDvVi~a------tg---t~~  341 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVVTVEEAIGDADIVVTA------TG---NKD  341 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHGGGCSEEEEC------SS---SSC
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEEecHHHHHhCCCEEEEC------CC---CHH
Confidence            45688999999998886     554 7777766654210         111245667888884333      22   122


Q ss_pred             CCC------C-C-----ceeec-c-cCHHHHHH-HHHccccccccccCCCCCCCCCCCC--cccCCcEE
Q psy5266         124 LVQ------L-D-----NCGNG-L-LDQEALVE-FLRDKKIGGAGLDVMIPEPMPADHP--LVQLDNCE  175 (180)
Q Consensus       124 l~~------~-~-----Nv~~g-~-~~~~al~~-~L~~g~l~ga~ldV~~~Eplp~~~p--l~~~~nv~  175 (180)
                      +++      + +     |+.++ . ++.+++.+ +++++.+. ..+|++..++.  .++  ++..++++
T Consensus       342 ~i~~~~l~~mk~ggilvnvG~~~~eId~~aL~~~aL~~~~I~-~~ldv~~~~~~--~~~l~LL~~grlv  407 (494)
T 3ce6_A          342 IIMLEHIKAMKDHAILGNIGHFDNEIDMAGLERSGATRVNVK-PQVDLWTFGDT--GRSIIVLSEGRLL  407 (494)
T ss_dssp             SBCHHHHHHSCTTCEEEECSSSGGGBCHHHHHHTTCEEEEEE-TTEEEEECTTT--CCEEEEEGGGSCH
T ss_pred             HHHHHHHHhcCCCcEEEEeCCCCCccCHHHHHHhhhccceEE-EEEEEeecCCc--chHHHHHhCCCEE
Confidence            332      1 1     55554 3 78888888 78888887 56788654221  344  44455664

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=84.75  E-value=0.028  Score=46.98  Aligned_cols=118  Identities=8%  Similarity=-0.005  Sum_probs=64.9

Q ss_pred             cCCccccc-----eeeeEEEeccccccCCc----cceeeccCHHHHhcc----CCEEEEccCCCCCCcceeCHhHHhccC
Q psy5266          11 TGTPGQVH-----LIVCVLIRYHVDLTGGS----KQVYLILVIRTRSAQ----SDFIFVTCALTKDTEQLIGRKQFSLMK   77 (180)
Q Consensus        11 ~G~iG~~~-----~~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~----~D~v~~h~pl~~~T~glIg~~~i~~mk   77 (180)
                      +|.||+..     -.|..+..||++.....    .+.....++++++++    ||+|++++|. ..+..++  ..+..++
T Consensus        16 ~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~-~~~~~vl--~~l~~~~   92 (341)
T 3ktd_A           16 LGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPM-TAIDSLL--DAVHTHA   92 (341)
T ss_dssp             CSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCH-HHHHHHH--HHHHHHC
T ss_pred             ecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCH-HHHHHHH--HHHHccC
Confidence            67777761     12456777776653211    112235688888875    6999999995 3566666  3455568


Q ss_pred             CCcEEEecCCCCccCHHHHHHHHhcCCcceEE-eecCCCC---CCCCCCCCCCCCceeec
Q psy5266          78 PTAILINTSRGGLLDQEALVEFLRDKKIGGAG-LDVMIPE---PLPADHPLVQLDNCGNG  133 (180)
Q Consensus        78 ~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~-lDv~~~e---p~~~~~~l~~~~Nv~~g  133 (180)
                      +++++++++--.....+.+.+.+.  .+.++. -+++-.|   |...+..|+.-.+++++
T Consensus        93 ~~~iv~Dv~Svk~~i~~~~~~~~~--~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~ilt  150 (341)
T 3ktd_A           93 PNNGFTDVVSVKTAVYDAVKARNM--QHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVT  150 (341)
T ss_dssp             TTCCEEECCSCSHHHHHHHHHTTC--GGGEECEEECCSCC-CCGGGCCSSTTTTCEEEEC
T ss_pred             CCCEEEEcCCCChHHHHHHHHhCC--CCcEecCCccccccccchhhhhhHHhcCCeEEEE
Confidence            899999886543222334444432  222222 2444322   11123455555566664

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=83.62  E-value=0.46  Score=37.16  Aligned_cols=58  Identities=3%  Similarity=-0.047  Sum_probs=42.1

Q ss_pred             cCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccCHHHHHHHHhcC
Q psy5266          42 LVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDK  103 (180)
Q Consensus        42 ~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~  103 (180)
                      .++++++++||+|++++|-......+  .+....+++  ++++++.....+.+.+.+.+.+.
T Consensus        48 ~~~~~~~~~aDvvi~~v~~~~~~~~~--~~~~~~~~~--~vi~~s~~~~~~~~~l~~~~~~~  105 (264)
T 1i36_A           48 ETSEEDVYSCPVVISAVTPGVALGAA--RRAGRHVRG--IYVDINNISPETVRMASSLIEKG  105 (264)
T ss_dssp             ECCHHHHHTSSEEEECSCGGGHHHHH--HHHHTTCCS--EEEECSCCCHHHHHHHHHHCSSS
T ss_pred             CCHHHHHhcCCEEEEECCCHHHHHHH--HHHHHhcCc--EEEEccCCCHHHHHHHHHHHhhC
Confidence            67888999999999999976444433  345556776  88998766655566787777653

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=83.55  E-value=3.2  Score=32.45  Aligned_cols=59  Identities=5%  Similarity=0.065  Sum_probs=41.3

Q ss_pred             ccCHHHHhccCCEEEEccCCC--CCCcceeCHhHHhccCCCcEEEecCCCCccCHHHHHHHHhcCCc
Q psy5266          41 ILVIRTRSAQSDFIFVTCALT--KDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKI  105 (180)
Q Consensus        41 ~~~l~~l~~~~D~v~~h~pl~--~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i  105 (180)
                      ..+++++ +++|+|++++|..  +.+...+.   ...+++|.++++++.+.. +. .+.+.+++..+
T Consensus       163 ~~~~~~~-~~~Divi~~tp~~~~~~~~~~l~---~~~l~~g~~viD~~~~p~-~t-~l~~~a~~~g~  223 (263)
T 2d5c_A          163 AVPLEKA-REARLLVNATRVGLEDPSASPLP---AELFPEEGAAVDLVYRPL-WT-RFLREAKAKGL  223 (263)
T ss_dssp             ECCGGGG-GGCSEEEECSSTTTTCTTCCSSC---GGGSCSSSEEEESCCSSS-SC-HHHHHHHHTTC
T ss_pred             hhhHhhc-cCCCEEEEccCCCCCCCCCCCCC---HHHcCCCCEEEEeecCCc-cc-HHHHHHHHCcC
Confidence            4578888 9999999999976  33334554   456888999999887643 22 46666665443

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=83.53  E-value=0.042  Score=44.06  Aligned_cols=75  Identities=11%  Similarity=0.073  Sum_probs=46.2

Q ss_pred             CCccccc-----eeeeEEEeccccccCCc----cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEE
Q psy5266          12 GTPGQVH-----LIVCVLIRYHVDLTGGS----KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL   82 (180)
Q Consensus        12 G~iG~~~-----~~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~l   82 (180)
                      |.+|+..     --|..+..|+++.....    .+ ....++.+.+++||+|++++|-.. +..++ .+....++++.++
T Consensus        21 G~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g-~~~~~~~~~~~~aDvVi~av~~~~-~~~v~-~~l~~~l~~~~iv   97 (286)
T 3c24_A           21 GKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMG-IPLTDGDGWIDEADVVVLALPDNI-IEKVA-EDIVPRVRPGTIV   97 (286)
T ss_dssp             SHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTT-CCCCCSSGGGGTCSEEEECSCHHH-HHHHH-HHHGGGSCTTCEE
T ss_pred             CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcC-CCcCCHHHHhcCCCEEEEcCCchH-HHHHH-HHHHHhCCCCCEE
Confidence            7777751     11345667766543210    01 122367788999999999999543 44444 2333457889999


Q ss_pred             EecCCCC
Q psy5266          83 INTSRGG   89 (180)
Q Consensus        83 vn~~Rg~   89 (180)
                      ++++.+.
T Consensus        98 v~~s~~~  104 (286)
T 3c24_A           98 LILDAAA  104 (286)
T ss_dssp             EESCSHH
T ss_pred             EECCCCc
Confidence            9987764

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=82.35  E-value=0.11  Score=40.97  Aligned_cols=79  Identities=8%  Similarity=0.029  Sum_probs=48.2

Q ss_pred             cCCccccc-----eeeeE-EEeccccccCC---cc--ceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCC
Q psy5266          11 TGTPGQVH-----LIVCV-LIRYHVDLTGG---SK--QVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPT   79 (180)
Q Consensus        11 ~G~iG~~~-----~~~~~-~~~~~~~~~~~---~~--~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g   79 (180)
                      .|++|+.+     -.|.. +..|+++....   .+  +.....+++++++++|+|++++|-. ....++ .+....++++
T Consensus        18 ~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~-~~~~v~-~~l~~~~~~~   95 (266)
T 3d1l_A           18 AGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDS-AFAELL-QGIVEGKREE   95 (266)
T ss_dssp             CSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHH-HHHHHH-HHHHTTCCTT
T ss_pred             CCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHH-HHHHHH-HHHHhhcCCC
Confidence            56667652     01233 55666553321   01  2234568889999999999999955 223344 2333457789


Q ss_pred             cEEEecCCCCcc
Q psy5266          80 AILINTSRGGLL   91 (180)
Q Consensus        80 ~~lvn~~Rg~~v   91 (180)
                      .++++++.+.-.
T Consensus        96 ~ivv~~s~~~~~  107 (266)
T 3d1l_A           96 ALMVHTAGSIPM  107 (266)
T ss_dssp             CEEEECCTTSCG
T ss_pred             cEEEECCCCCch
Confidence            999999887543

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=80.21  E-value=2.8  Score=33.92  Aligned_cols=72  Identities=17%  Similarity=0.157  Sum_probs=48.0

Q ss_pred             cCCccccce------eee-EEEeccccccC---Ccc--c--eeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhcc
Q psy5266          11 TGTPGQVHL------IVC-VLIRYHVDLTG---GSK--Q--VYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLM   76 (180)
Q Consensus        11 ~G~iG~~~~------~~~-~~~~~~~~~~~---~~~--~--~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~m   76 (180)
                      +|.+|+.|.      ++. .+..|+++...   ..+  +  .....++++++++||+|++++|-   +..++..   ..+
T Consensus       143 ~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~---~~~v~~~---~~l  216 (312)
T 2i99_A          143 AGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLA---TEPILFG---EWV  216 (312)
T ss_dssp             CSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCC---SSCCBCG---GGS
T ss_pred             CcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCC---CCcccCH---HHc
Confidence            566666531      233 67777776542   111  1  33467899999999999999994   4556654   568


Q ss_pred             CCCcEEEecCCC
Q psy5266          77 KPTAILINTSRG   88 (180)
Q Consensus        77 k~g~~lvn~~Rg   88 (180)
                      ++|.++++++..
T Consensus       217 ~~g~~vi~~g~~  228 (312)
T 2i99_A          217 KPGAHINAVGAS  228 (312)
T ss_dssp             CTTCEEEECCCC
T ss_pred             CCCcEEEeCCCC
Confidence            899999988544

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=80.04  E-value=1.8  Score=36.83  Aligned_cols=62  Identities=11%  Similarity=0.186  Sum_probs=47.4

Q ss_pred             ceeee---EEEeccccccCCccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhcc-CCCcEEEecC
Q psy5266          18 HLIVC---VLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLM-KPTAILINTS   86 (180)
Q Consensus        18 ~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~m-k~g~~lvn~~   86 (180)
                      ..+|+   .+..+|.+..... .  +   ++ .++++|+|+.++....+.--+|.++.+++| |+|+++|.++
T Consensus       235 ~~lGa~~~~V~v~D~~~~~~g-~--~---~~-~i~~aDivIn~vlig~~aP~Lvt~e~v~~m~k~gsVIVDVA  300 (394)
T 2qrj_A          235 HKVGIPDANILKWDIKETSRG-G--P---FD-EIPQADIFINCIYLSKPIAPFTNMEKLNNPNRRLRTVVDVS  300 (394)
T ss_dssp             HHTTCCGGGEEEECHHHHTTC-S--C---CT-HHHHSSEEEECCCCCSSCCCSCCHHHHCCTTCCCCEEEETT
T ss_pred             HhCCCCcCceEEeeccccccC-C--c---hh-hHhhCCEEEECcCcCCCCCcccCHHHHhcCcCCCeEEEEEe
Confidence            35676   7888888762211 1  1   13 356999999999997778899999999999 9999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	180
d1sc6a1	188	c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase	4e-21
d2naca1	188	c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom	6e-21
d1ygya1	184	c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase	4e-17
d1gdha1	191	c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp	3e-16
d1mx3a1	193	c.2.1.4 (A:126-318) Transcription corepressor CtbP	8e-16
d1mx3a1	193	c.2.1.4 (A:126-318) Transcription corepressor CtbP	4e-09
d1dxya1	199	c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro	2e-06
d1qp8a1	181	c.2.1.4 (A:83-263) Putative formate dehydrogenase	2e-06
d1qp8a1	181	c.2.1.4 (A:83-263) Putative formate dehydrogenase	5e-06
d1j4aa1	197	c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto	3e-06

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 83.5 bits (205), Expect = 4e-21
 Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 4/86 (4%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
             SD + +       T+ ++G K+ SLMKP ++LIN SRG ++D  AL + L  K + GA
Sbjct: 95  NMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGA 154

Query: 109 GLDVMIPEPL----PADHPLVQLDNC 130
            +DV   EP     P   PL + DN 
Sbjct: 155 AIDVFPTEPATNSDPFTSPLAEFDNV 180

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score = 82.8 bits (203), Expect = 6e-21
 Identities = 26/82 (31%), Positives = 41/82 (50%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
              D + + C L  +TE +I  +   L K  A ++NT+RG L D++A+   L   ++ G 
Sbjct: 99  PVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGY 158

Query: 109 GLDVMIPEPLPADHPLVQLDNC 130
             DV  P+P P DHP   +   
Sbjct: 159 AGDVWFPQPAPKDHPWRTMPYN 180

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 72.7 bits (177), Expect = 4e-17
 Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           A++DFI V    T +T  LI ++  +  KP  I++N +RGGL+D+ AL + +    +  A
Sbjct: 97  ARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAA 156

Query: 109 GLDVMIPEPLPADHPLVQLDNC 130
           GLDV   EP   D PL +L   
Sbjct: 157 GLDVFATEPCT-DSPLFELAQV 177

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score = 70.7 bits (172), Expect = 3e-16
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 1/82 (1%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
           + S F  +    T +T     +     +   AI++NT+RG L+D E +V  L   ++  A
Sbjct: 102 SVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYA 161

Query: 109 GLDVMIPEPLPADHPLVQLDNC 130
           G DV   EP   +     L N 
Sbjct: 162 GFDVFAGEP-NINEGYYDLPNT 182

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 69.7 bits (169), Expect = 8e-16
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
             SD + + C L +    LI       M+  A L+NT+RGGL+D++AL + L++ +I GA
Sbjct: 103 FHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGA 162

Query: 109 GLDVMIPEPLP-ADHPLVQLDNC 130
            LDV   EP   +  PL    N 
Sbjct: 163 ALDVHESEPFSFSQGPLKDAPNL 185

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 4e-09
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 127 LDNCGNGLLDQEALVEFLRDKKIGGAGLDVMIPEPMP-ADHPLVQLDNC 174
           ++    GL+D++AL + L++ +I GA LDV   EP   +  PL    N 
Sbjct: 137 VNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNL 185

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 44.4 bits (103), Expect = 2e-06
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 13/95 (13%)

Query: 49  AQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGA 108
            QSD I +     +    +I    F+LMKP AI+INT+R  L+D +A++  L+  K+ G 
Sbjct: 96  KQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGV 155

Query: 109 GLDVMIPEPL-------------PADHPLVQLDNC 130
           G+D    E               P    L+ + N 
Sbjct: 156 GIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNV 190

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 43.6 bits (101), Expect = 2e-06
 Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 1/80 (1%)

Query: 52  DFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLD 111
                   L K T  L+  +  +LM   A+ +N  R  +LD++ ++  L+++       D
Sbjct: 94  RAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASD 153

Query: 112 VMI-PEPLPADHPLVQLDNC 130
           V         D     L N 
Sbjct: 154 VWWGRNDFAKDAEFFSLPNV 173

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 42.4 bits (98), Expect = 5e-06
 Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 1/48 (2%)

Query: 128 DNCGNGLLDQEALVEFLRDKKIGGAGLDVMI-PEPMPADHPLVQLDNC 174
           +     +LD++ ++  L+++       DV         D     L N 
Sbjct: 126 NVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNV 173

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 43.3 bits (100), Expect = 3e-06
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 13/92 (14%)

Query: 52  DFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLD 111
           D I +          +I  +  + MK   +++N SRG L+D +A++  L   KI G  +D
Sbjct: 98  DVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMD 157

Query: 112 VMIPEP-------------LPADHPLVQLDNC 130
           V   E                    L+   N 
Sbjct: 158 VYEGEVGIFNEDWEGKEFPDARLADLIARPNV 189

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	180
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.97
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	99.96
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	99.96
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.96
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	99.96
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	99.96
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.95
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	99.95
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.76
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.74
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	99.74
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	99.73
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.65
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	99.65
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	99.63
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	99.33
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	98.46
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	97.04
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	96.84
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.91
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	95.86
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	95.08
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	93.75
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	92.6
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	91.93
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	89.2
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	85.23
d1l7da2	194	Nicotinamide nucleotide transhydrogenase dI compon	83.98
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	83.06

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.97  E-value=4.6e-32  Score=209.87  Aligned_cols=124  Identities=29%  Similarity=0.437  Sum_probs=110.6

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCc--cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGS--KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILI   83 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lv   83 (180)
                      .|+||+.     ..|||++++||+......  +......+++|++++||+|++|+|+|++|++|||.+.|++||+++++|
T Consensus        52 ~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lI  131 (184)
T d1ygya1          52 LGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIV  131 (184)
T ss_dssp             CSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEE
T ss_pred             ccchhHHHHHHhhhccceEEeecCCCChhHHhhcCceeccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEE
Confidence            6788884     468999999988765311  222467899999999999999999999999999999999999999999


Q ss_pred             ecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeeccc
Q psy5266          84 NTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNGLL  135 (180)
Q Consensus        84 n~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g~~  135 (180)
                      |++||++||+++|.++|+++++.+|+||||++||++ ++||+++|||+.+++
T Consensus       132 N~sRG~iVde~aL~~aL~~~~i~~a~lDV~~~EP~~-~~~l~~~~nviiTPH  182 (184)
T d1ygya1         132 NAARGGLVDEAALADAITGGHVRAAGLDVFATEPCT-DSPLFELAQVVVTPH  182 (184)
T ss_dssp             ECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCS-CCGGGGCTTEEECSS
T ss_pred             EecchhhhhhHHHHHHHhcCcEeEEEEeCCCCCCCC-CchHhcCCCEEECCC
Confidence            999999999999999999999999999999999975 899999999998754

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=2.5e-30  Score=200.48  Aligned_cols=125  Identities=28%  Similarity=0.383  Sum_probs=108.4

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEec
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINT   85 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~   85 (180)
                      .|+||+.     +.|+|++..||+.............+|+|++++||||++|+|++++|+++||.+.|++||+++++||+
T Consensus        52 ~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~  131 (188)
T d1sc6a1          52 YGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINA  131 (188)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEEC
T ss_pred             cccchhhhhhhcccccceEeeccccccchhhhhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEc
Confidence            6788885     47899999999887766666678889999999999999999999999999999999999999999999


Q ss_pred             CCCCccCHHHHHHHHhcCCcceEEeecCCCCCC----CCCCCCCCCCceeeccc
Q psy5266          86 SRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPL----PADHPLVQLDNCGNGLL  135 (180)
Q Consensus        86 ~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~----~~~~~l~~~~Nv~~g~~  135 (180)
                      +||++||+++|.++|+++++.+++||||++||.    +..++++++|||+.+++
T Consensus       132 aRG~lvde~aL~~aL~~~~~~~a~lDV~~~EP~~~~~~~~~~l~~~~nv~~TPH  185 (188)
T d1sc6a1         132 SRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPH  185 (188)
T ss_dssp             SCSSSBCHHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECC
T ss_pred             CcHHhhhhHHHHHHHHcCCceEEEEecCCCCCCCcCCccchhHhcCCCEEEcCC
Confidence            999999999999999999999999999999997    34568999999998754

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.96  E-value=3.5e-30  Score=200.66  Aligned_cols=125  Identities=29%  Similarity=0.427  Sum_probs=112.7

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCcc---ceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGSK---QVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL   82 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~l   82 (180)
                      .|+||+.     +.|||++.+||+.......   +.....+|++++++||+|++|+|++++|++|||.+.|++||+++++
T Consensus        57 ~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~l  136 (193)
T d1mx3a1          57 LGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFL  136 (193)
T ss_dssp             CSHHHHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEE
T ss_pred             cccccccceeeeeccccceeeccCcccccchhhhccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeE
Confidence            6788885     4789999999988765332   3456789999999999999999999999999999999999999999


Q ss_pred             EecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCC-CCCCCCCCCceeeccc
Q psy5266          83 INTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLP-ADHPLVQLDNCGNGLL  135 (180)
Q Consensus        83 vn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~-~~~~l~~~~Nv~~g~~  135 (180)
                      ||++||++||+++|.++|+++++.++++|||++||++ .+++|+++|||+.|++
T Consensus       137 IN~sRG~ivde~aL~~aL~~~~i~~a~lDV~~~EP~~~~~~~l~~~~nvi~TPH  190 (193)
T d1mx3a1         137 VNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPH  190 (193)
T ss_dssp             EECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSS
T ss_pred             EecCCceEEcHHHHHHHHHcCCceEEEEEcCCCCCCCCCchhHHcCCCEEEcCC
Confidence            9999999999999999999999999999999999985 5789999999999855

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.96  E-value=2.6e-30  Score=201.11  Aligned_cols=124  Identities=23%  Similarity=0.247  Sum_probs=111.2

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCc----cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGS----KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAI   81 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~   81 (180)
                      .|+||+.     +.|||++..||+......    .......+|++++++||+|++|+|+|++|++|||++.|++||+|++
T Consensus        55 ~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~  134 (191)
T d1gdha1          55 FGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAI  134 (191)
T ss_dssp             CSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEE
T ss_pred             cccchHHHHHHHHhhccccccccccccccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccE
Confidence            5888874     478999999998766422    1234678999999999999999999999999999999999999999


Q ss_pred             EEecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeeccc
Q psy5266          82 LINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNGLL  135 (180)
Q Consensus        82 lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g~~  135 (180)
                      +||++||++||+++|.++|+++++.+++||||++|| +.+++|+++|||+.+++
T Consensus       135 lIN~sRG~ivde~aL~~aL~~g~i~~a~lDV~~~EP-~~~~~l~~~~nvi~TPH  187 (191)
T d1gdha1         135 VVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFLFPH  187 (191)
T ss_dssp             EEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT-SCCTTGGGCTTEEECSS
T ss_pred             EEecCCccchhhHHHHHHHHcCCceEEEEECCCCCC-CCCchHHcCCCEEECCc
Confidence            999999999999999999999999999999999999 66899999999998854

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.96  E-value=6.3e-30  Score=198.25  Aligned_cols=125  Identities=25%  Similarity=0.341  Sum_probs=110.9

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCc----cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGS----KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAI   81 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~   81 (180)
                      .|+||+.     ..|+|++..||+......    .+.....+|++++++||+|++|+|++++|++|||++.|++||+|++
T Consensus        52 ~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~  131 (188)
T d2naca1          52 AGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAY  131 (188)
T ss_dssp             CSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEE
T ss_pred             ccccchhhhhhhhccCceEEEEeeccccccccccccccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCE
Confidence            7888875     256777777777654321    2246788999999999999999999999999999999999999999


Q ss_pred             EEecCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeeccc
Q psy5266          82 LINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNGLL  135 (180)
Q Consensus        82 lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g~~  135 (180)
                      +||++||++||+++|.++|+++++.+|+||||++||++.++||+++||++.+++
T Consensus       132 lIN~aRG~ivd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nv~~TPH  185 (188)
T d2naca1         132 IVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPH  185 (188)
T ss_dssp             EEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCS
T ss_pred             EEecCchhhhhHHHHHHHHhCCCceeEEEeCCCCCCCCCCChHHcCCCeEEccc
Confidence            999999999999999999999999999999999999999999999999998754

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.96  E-value=1.5e-30  Score=203.38  Aligned_cols=137  Identities=23%  Similarity=0.218  Sum_probs=116.2

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCc-cceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEe
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGS-KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILIN   84 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn   84 (180)
                      .|+||+.     +.|||++++||+...... ...+...+|++++++||+|++|+|+|++|+++||++.|++||+++++||
T Consensus        51 ~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~~~~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN  130 (197)
T d1j4aa1          51 TGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVN  130 (197)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEE
T ss_pred             ccccchhHHHhHhhhcccccccCcccccccccceeeeccccccccccccccccCCccccccccccHHHHhhhCCccEEEe
Confidence            7888885     478999999998765322 2234678999999999999999999999999999999999999999999


Q ss_pred             cCCCCccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCCceeecccCHHHHHHHHHccccccccccCCCCCCCCC
Q psy5266          85 TSRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLDNCGNGLLDQEALVEFLRDKKIGGAGLDVMIPEPMPA  164 (180)
Q Consensus        85 ~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~Nv~~g~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~  164 (180)
                      ++||++||+++|.++|+++++.+|+||||+.||...++++.                               ....|++.
T Consensus       131 ~sRG~ivde~aL~~aL~~~~i~~a~lDV~~~Ep~~~~~~~~-------------------------------~~~~p~~~  179 (197)
T d1j4aa1         131 VSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWE-------------------------------GKEFPDAR  179 (197)
T ss_dssp             CSCGGGBCHHHHHHHHHHTSEEEEEESCCTTCTTTTTSBCT-------------------------------TSCCSCHH
T ss_pred             cCchhhhhhHHHHHHHhcccchheeeeccccCCcccccccc-------------------------------cccCCccc
Confidence            99999999999999999999999999999999964433332                               11246778


Q ss_pred             CCCcccCCcEEEcC
Q psy5266         165 DHPLVQLDNCEIRG  178 (180)
Q Consensus       165 ~~pl~~~~nv~it~  178 (180)
                      ++|||++|||++|+
T Consensus       180 ~~~L~~~~nviiTP  193 (197)
T d1j4aa1         180 LADLIARPNVLVTP  193 (197)
T ss_dssp             HHHHHHCTTEEECS
T ss_pred             hhhhhcCCCEEeCc
Confidence            88999999999987

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.95  E-value=4e-30  Score=201.15  Aligned_cols=125  Identities=28%  Similarity=0.334  Sum_probs=112.1

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEec
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINT   85 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~   85 (180)
                      .|+||+.     ..|||++++||+.............+|++++++||+|++|+|++++|++|||++.|++||+++++||+
T Consensus        53 ~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~  132 (199)
T d1dxya1          53 TGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINT  132 (199)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSSCCSSCCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEEC
T ss_pred             cccccccccccccccceeeeccCCccchhhhcchhHHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEec
Confidence            7888885     47899999999987765555567889999999999999999999999999999999999999999999


Q ss_pred             CCCCccCHHHHHHHHhcCCcceEEeecCCCCCCC-------------CCCCCCCCCceeeccc
Q psy5266          86 SRGGLLDQEALVEFLRDKKIGGAGLDVMIPEPLP-------------ADHPLVQLDNCGNGLL  135 (180)
Q Consensus        86 ~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~ep~~-------------~~~~l~~~~Nv~~g~~  135 (180)
                      +||++||+++|.++|+++++.+++||||++||.+             ..++|+.+|||+.+++
T Consensus       133 aRG~vvde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~~~~~~~~~p~~~~L~~~~nviiTPH  195 (199)
T d1dxya1         133 ARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPH  195 (199)
T ss_dssp             SCTTSBCHHHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSS
T ss_pred             ccHhhhhhHHHHHHHhcCCcceEeccccCCCCcchhhccccccccChhhHHHhcCCCEEECCc
Confidence            9999999999999999999999999999999951             2246788999998854

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.95  E-value=2.9e-28  Score=187.99  Aligned_cols=123  Identities=16%  Similarity=0.200  Sum_probs=109.3

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCccceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEec
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINT   85 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~   85 (180)
                      .|+||+.     ..|||++.+||+.......  ....+|+|++++||+|++|+|++++|+++||++.|++||+++++||+
T Consensus        50 ~G~IG~~va~~l~~~g~~v~~~d~~~~~~~~--~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~  127 (181)
T d1qp8a1          50 LGEIGTRVGKILAALGAQVRGFSRTPKEGPW--RFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNV  127 (181)
T ss_dssp             CSTHHHHHHHHHHHTTCEEEEECSSCCCSSS--CCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEEC
T ss_pred             cccccccceeeeeccccccccccccccccce--eeeechhhhhhccchhhcccccccccccccccceeeeccccceEEec
Confidence            7888986     3579999999987654322  24578999999999999999999999999999999999999999999


Q ss_pred             CCCCccCHHHHHHHHhcCCcceEEeecCCCC-CCCCCCCCCCCCceeeccc
Q psy5266          86 SRGGLLDQEALVEFLRDKKIGGAGLDVMIPE-PLPADHPLVQLDNCGNGLL  135 (180)
Q Consensus        86 ~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~e-p~~~~~~l~~~~Nv~~g~~  135 (180)
                      +||+++|+++|.++|+++.+.++++||++.| |++.++||+++|||+.|++
T Consensus       128 ~RG~ivd~~aL~~aL~~~~i~~aalDV~~~e~p~~~~~~l~~~~nvi~TPH  178 (181)
T d1qp8a1         128 GRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPW  178 (181)
T ss_dssp             SCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEEECCS
T ss_pred             cccccccchhhhhhcccCcEEEEEEecCCCCCCCCCCChHHcCCCEEeccc
Confidence            9999999999999999999999999998755 5677889999999998854

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.76  E-value=1.7e-19  Score=138.56  Aligned_cols=114  Identities=22%  Similarity=0.371  Sum_probs=92.7

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc--------cCHHHHHHHHhcCCcceEEeecCCCCCC-CCCC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL--------LDQEALVEFLRDKKIGGAGLDVMIPEPL-PADH  122 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~--------vd~~al~~~L~~~~i~~~~lDv~~~ep~-~~~~  122 (180)
                      ..+.++|.|++|.+.+++     +++ |+.++...|..-        +...++.++++++|+      |+.+.|+ +++.
T Consensus        40 ~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~~~l~ell~~sDi------v~~~~Plt~~T~  113 (184)
T d1ygya1          40 TEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADF------ISVHLPKTPETA  113 (184)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHHHTCEECCHHHHHHHCSE------EEECCCCSTTTT
T ss_pred             ccccceeeeeccccchhHHHHHHhhhccceEEeecCCCChhHHhhcCceeccHHHHHhhCCE------EEEcCCCCchhh
Confidence            456789999999999987     677 887877765421        122358889999999      4455555 5566


Q ss_pred             CCCCCC------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266         123 PLVQLD------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       123 ~l~~~~------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~  178 (180)
                      .|++.+            |++|| +++++||+++|++|++++|++|||++||++ ++|||++|||++|+
T Consensus       114 ~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i~~a~lDV~~~EP~~-~~~l~~~~nviiTP  181 (184)
T d1ygya1         114 GLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCT-DSPLFELAQVVVTP  181 (184)
T ss_dssp             TCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCS-CCGGGGCTTEEECS
T ss_pred             hhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcEeEEEEeCCCCCCCC-CchHhcCCCEEECC
Confidence            677632            89998 999999999999999999999999999986 89999999999997

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.74  E-value=3e-19  Score=138.00  Aligned_cols=113  Identities=19%  Similarity=0.220  Sum_probs=92.0

Q ss_pred             CCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc----------cCHHHHHHHHhcCCcceEEeecCCCCCC-CCC
Q psy5266          59 ALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL----------LDQEALVEFLRDKKIGGAGLDVMIPEPL-PAD  121 (180)
Q Consensus        59 pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~----------vd~~al~~~L~~~~i~~~~lDv~~~ep~-~~~  121 (180)
                      .+.++|.|+||.+.+++     +++ |+.++...+...          ...+++.++++++|+      |+.+.|+ +++
T Consensus        44 ~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~ll~~sD~------v~l~~plt~~T  117 (191)
T d1gdha1          44 KLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQF------FSLNAPSTPET  117 (191)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSE------EEECCCCCTTT
T ss_pred             eecccceEEeecccchHHHHHHHHhhccccccccccccccchhhcccccccCCHHHHHhhCCe------EEecCCCCchH
Confidence            35689999999999985     677 777776554321          223468999999999      5556665 556


Q ss_pred             CCCCCCC------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266         122 HPLVQLD------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       122 ~~l~~~~------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~  178 (180)
                      ..+++.+            |+.|| +++++||+++|++|++++|++|||++|| ++++|||++|||++|+
T Consensus       118 ~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~~a~lDV~~~EP-~~~~~l~~~~nvi~TP  186 (191)
T d1gdha1         118 RYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFLFP  186 (191)
T ss_dssp             TTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT-SCCTTGGGCTTEEECS
T ss_pred             hheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCCceEEEEECCCCCC-CCCchHHcCCCEEECC
Confidence            7777633            89998 9999999999999999999999999999 6789999999999997

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.74  E-value=8.7e-19  Score=135.59  Aligned_cols=115  Identities=24%  Similarity=0.275  Sum_probs=93.1

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc---------cCHHHHHHHHhcCCcceEEeecCCCCCC-CCC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL---------LDQEALVEFLRDKKIGGAGLDVMIPEPL-PAD  121 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~---------vd~~al~~~L~~~~i~~~~lDv~~~ep~-~~~  121 (180)
                      ..+.++|.|+||.+.+++     +++ |+.++...|..-         ....++.++++++|+      |+.+.|+ +.+
T Consensus        45 ~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~l~~ll~~sD~------i~~~~plt~~T  118 (193)
T d1mx3a1          45 ARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDC------VTLHCGLNEHN  118 (193)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSE------EEECCCCCTTC
T ss_pred             eeeeCceEEEeccccccccceeeeeccccceeeccCcccccchhhhccccccchhhccccCCE------EEEeecccccc
Confidence            447889999999999987     777 888877665422         122368999999999      4445554 456


Q ss_pred             CCCCCCC------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCC-CCCCcccCCcEEEcC
Q psy5266         122 HPLVQLD------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMP-ADHPLVQLDNCEIRG  178 (180)
Q Consensus       122 ~~l~~~~------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp-~~~pl~~~~nv~it~  178 (180)
                      ..+++.+            |++|| +++++||.++|++|++.+|++|||++||++ .++||+++|||++|+
T Consensus       119 ~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~~~EP~~~~~~~l~~~~nvi~TP  189 (193)
T d1mx3a1         119 HHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTP  189 (193)
T ss_dssp             TTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECS
T ss_pred             hhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcCCceEEEEEcCCCCCCCCCchhHHcCCCEEEcC
Confidence            6666532            88898 999999999999999999999999999987 578999999999997

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.73  E-value=1e-18  Score=134.53  Aligned_cols=115  Identities=23%  Similarity=0.350  Sum_probs=94.3

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCCc----------cCHHHHHHHHhcCCcceEEeecCCCCCC-CC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGGL----------LDQEALVEFLRDKKIGGAGLDVMIPEPL-PA  120 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~~----------vd~~al~~~L~~~~i~~~~lDv~~~ep~-~~  120 (180)
                      ..+..++.|++|.+.+++     +++ |+.++...|...          ....++.++++++|+      |+.+.|+ +.
T Consensus        40 ~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~sD~------v~~~~plt~~  113 (188)
T d2naca1          40 YDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDV------VTLNCPLHPE  113 (188)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSE------EEECSCCCTT
T ss_pred             eeccccceeeccccccchhhhhhhhccCceEEEEeeccccccccccccccccCCHHHHHHhccc------hhhccccccc
Confidence            357789999999999985     666 777776665432          223358899999999      5555554 45


Q ss_pred             CCCCCCCC------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcccCCcEEEcC
Q psy5266         121 DHPLVQLD------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       121 ~~~l~~~~------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~~~~nv~it~  178 (180)
                      +..+++.+            |++|| +++++||+++|++|++.+|++|||++||+|+++|||++|||++|+
T Consensus       114 T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nv~~TP  184 (188)
T d2naca1         114 TEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTP  184 (188)
T ss_dssp             TTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCC
T ss_pred             chhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCceeEEEeCCCCCCCCCCChHHcCCCeEEcc
Confidence            66777643            99998 999999999999999999999999999999999999999999997

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.65  E-value=1.2e-18  Score=135.34  Aligned_cols=115  Identities=19%  Similarity=0.278  Sum_probs=92.1

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCC------ccCHHHHHHHHhcCCcceEEeecCCCCCC-CCCCCC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGG------LLDQEALVEFLRDKKIGGAGLDVMIPEPL-PADHPL  124 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~------~vd~~al~~~L~~~~i~~~~lDv~~~ep~-~~~~~l  124 (180)
                      -.+.++|.|+||.+.+++     +|+ |+.++...|..      .+...++.++++++|+      ++.+.|+ +.++.+
T Consensus        41 ~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~l~~l~~~~D~------v~~~~plt~~T~~l  114 (199)
T d1dxya1          41 KELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDV------IDLHVPGIEQNTHI  114 (199)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSCCTTCEECCHHHHHHHCSE------EEECCCCCGGGTTS
T ss_pred             ccccceeeeeeecccccccccccccccceeeeccCCccchhhhcchhHHHHHHHHHhccc------ceeeeccccccccc
Confidence            457789999999999986     677 78877665532      2334478999999999      4555554 456667


Q ss_pred             CCCC------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCC-------------CCCCCcccCCcEEEcC
Q psy5266         125 VQLD------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPM-------------PADHPLVQLDNCEIRG  178 (180)
Q Consensus       125 ~~~~------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Epl-------------p~~~pl~~~~nv~it~  178 (180)
                      ++..            |++|| +++++||+++|++|+|+||++|||++||+             |..+|||++|||++|+
T Consensus       115 i~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~~~~~~~~~p~~~~L~~~~nviiTP  194 (199)
T d1dxya1         115 INEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSP  194 (199)
T ss_dssp             BCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECS
T ss_pred             ccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCcceEeccccCCCCcchhhccccccccChhhHHHhcCCCEEECC
Confidence            7632            88898 99999999999999999999999999996             3346788999999997

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=1.3e-17  Score=128.20  Aligned_cols=115  Identities=21%  Similarity=0.325  Sum_probs=86.3

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCC------ccCHHHHHHHHhcCCcceEEeecCCCCCC-CCCCCC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGG------LLDQEALVEFLRDKKIGGAGLDVMIPEPL-PADHPL  124 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~------~vd~~al~~~L~~~~i~~~~lDv~~~ep~-~~~~~l  124 (180)
                      ..+.+++.|+||.+.+++     ++. |+.++...|..      ....+.+.++++++|+.      +.+.|+ +.+..+
T Consensus        40 ~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~l~ell~~sDii------~i~~plt~~T~~l  113 (188)
T d1sc6a1          40 FEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVV------SLHVPENPSTKNM  113 (188)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHHHCSEE------EECCCSSTTTTTC
T ss_pred             ccccceEEEEeecccchhhhhhhcccccceEeeccccccchhhhhhhhhhHHHHHhhccce------eecccCCcchhhh
Confidence            357899999999999987     555 77776665532      12234688999999994      445554 556777


Q ss_pred             CCCC------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCC----CCCCCcccCCcEEEcC
Q psy5266         125 VQLD------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPM----PADHPLVQLDNCEIRG  178 (180)
Q Consensus       125 ~~~~------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Epl----p~~~pl~~~~nv~it~  178 (180)
                      ++.+            |++|| ++++++|+++|++|++.+|++|||++||+    |..+|||++|||++|+
T Consensus       114 i~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~~a~lDV~~~EP~~~~~~~~~~l~~~~nv~~TP  184 (188)
T d1sc6a1         114 MGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTP  184 (188)
T ss_dssp             BCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEEC
T ss_pred             ccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCceEEEEecCCCCCCCcCCccchhHhcCCCEEEcC
Confidence            7743            89998 99999999999999999999999999998    4556999999999997

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.63  E-value=1.9e-17  Score=126.78  Aligned_cols=114  Identities=18%  Similarity=0.224  Sum_probs=91.7

Q ss_pred             CCCCCcceeCHhHHhc-----cCC-CcEEEecCCCC----ccCHHHHHHHHhcCCcceEEeecCCCCCCCCCCCCCCCC-
Q psy5266          60 LTKDTEQLIGRKQFSL-----MKP-TAILINTSRGG----LLDQEALVEFLRDKKIGGAGLDVMIPEPLPADHPLVQLD-  128 (180)
Q Consensus        60 l~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~----~vd~~al~~~L~~~~i~~~~lDv~~~ep~~~~~~l~~~~-  128 (180)
                      +.++|.|+||.+.+++     +++ |+.++...|..    ..-.+++++.++++|+....++.+     +.+..+++.+ 
T Consensus        40 l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~~~~~~~~l~ell~~sDiv~~~~pl~-----~~t~~li~~~~  114 (181)
T d1qp8a1          40 IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLN-----KHTRGLVKYQH  114 (181)
T ss_dssp             CTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCSSSCCBSCSHHHHTTCSEEEECCCCS-----TTTTTCBCHHH
T ss_pred             ccCceEEEeccccccccceeeeeccccccccccccccccceeeeechhhhhhccchhhcccccc-----cccccccccce
Confidence            6789999999999996     666 77777776642    122346899999999966555554     3455566532 


Q ss_pred             -----------ceeec-ccCHHHHHHHHHccccccccccCCCCC-CCCCCCCcccCCcEEEcC
Q psy5266         129 -----------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPE-PMPADHPLVQLDNCEIRG  178 (180)
Q Consensus       129 -----------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~E-plp~~~pl~~~~nv~it~  178 (180)
                                 |++|| ++++++|+++|++|++.++++||+++| |++.++||+++|||++|+
T Consensus       115 l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~~aalDV~~~e~p~~~~~~l~~~~nvi~TP  177 (181)
T d1qp8a1         115 LALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATP  177 (181)
T ss_dssp             HTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEEECC
T ss_pred             eeeccccceEEeccccccccchhhhhhcccCcEEEEEEecCCCCCCCCCCChHHcCCCEEecc
Confidence                       88887 999999999999999999999999765 678899999999999997

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.33  E-value=1e-13  Score=107.00  Aligned_cols=106  Identities=19%  Similarity=0.227  Sum_probs=82.3

Q ss_pred             cCCCCCCcceeCHhHHhc-----cCC-CcEEEecCCCC-------ccCHHHHHHHHhcCCcceEEeecCCCCCC-CCCCC
Q psy5266          58 CALTKDTEQLIGRKQFSL-----MKP-TAILINTSRGG-------LLDQEALVEFLRDKKIGGAGLDVMIPEPL-PADHP  123 (180)
Q Consensus        58 ~pl~~~T~glIg~~~i~~-----mk~-g~~lvn~~Rg~-------~vd~~al~~~L~~~~i~~~~lDv~~~ep~-~~~~~  123 (180)
                      ..+.++|.|+||.+.+++     +++ |+.++...+..       .+..+++.+.++++|+      ++.+.|+ +.+..
T Consensus        39 ~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~~~~~~~~~l~~~l~~sDi------i~~~~plt~~T~~  112 (197)
T d1j4aa1          39 REVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADV------ISLHVPDVPANVH  112 (197)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHTTCBCSCHHHHHHHCSE------EEECSCCCGGGTT
T ss_pred             ccccCCeEEEecccccchhHHHhHhhhcccccccCcccccccccceeeecccccccccccc------ccccCCccccccc
Confidence            346789999999999997     677 77777665432       1223468999999999      4555554 44666


Q ss_pred             CCCCC------------ceeec-ccCHHHHHHHHHccccccccccCCCCCCCCCCCCcc
Q psy5266         124 LVQLD------------NCGNG-LLDQEALVEFLRDKKIGGAGLDVMIPEPMPADHPLV  169 (180)
Q Consensus       124 l~~~~------------Nv~~g-~~~~~al~~~L~~g~l~ga~ldV~~~Eplp~~~pl~  169 (180)
                      +++.+            |++|| +++++||.++|++|++++|++|||++||....+++.
T Consensus       113 li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~~~Ep~~~~~~~~  171 (197)
T d1j4aa1         113 MINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWE  171 (197)
T ss_dssp             CBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTCTTTTTSBCT
T ss_pred             cccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccchheeeeccccCCcccccccc
Confidence            77633            89998 999999999999999999999999999977665554

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=6.2e-08  Score=71.80  Aligned_cols=88  Identities=18%  Similarity=0.166  Sum_probs=71.2

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCccc---eeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQ---VYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL   82 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~l   82 (180)
                      +|.||+.     ++|||++..|+.+...-.+.   -+...++++.++.||+|+.+    ..++++|+.+.|.+||+|+++
T Consensus        32 yG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~~~~~a~~~adivvta----TGn~~vI~~eh~~~MKdgaIL  107 (163)
T d1li4a1          32 YGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIFVTT----TGCIDIILGRHFEQMKDDAIV  107 (163)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEEC----SSCSCSBCHHHHTTCCTTEEE
T ss_pred             cccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEeeehhhhhhhccEEEec----CCCccchhHHHHHhccCCeEE
Confidence            6888885     67899999998887642222   25778999999999988766    358899999999999999999


Q ss_pred             EecC-CCCccCHHHHHHHHhc
Q psy5266          83 INTS-RGGLLDQEALVEFLRD  102 (180)
Q Consensus        83 vn~~-Rg~~vd~~al~~~L~~  102 (180)
                      .|++ +..-+|.++|.+...+
T Consensus       108 ~N~Ghfd~EId~~~L~~~~~~  128 (163)
T d1li4a1         108 CNIGHFDVEIDVKWLNENAVE  128 (163)
T ss_dssp             EECSSSTTSBCHHHHHHHCSE
T ss_pred             EEeccccceecHHHHhhccce
Confidence            9986 5678999998875433

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=97.04  E-value=0.00035  Score=50.97  Aligned_cols=83  Identities=13%  Similarity=0.162  Sum_probs=61.2

Q ss_pred             CCcccc-----ceeeeEEEeccccccCCcc---ceeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEE
Q psy5266          12 GTPGQV-----HLIVCVLIRYHVDLTGGSK---QVYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILI   83 (180)
Q Consensus        12 G~iG~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lv   83 (180)
                      |.+|+-     +++|+++...+.+...-.+   .-++..+++|.++.+|+++....    ..++|+.+.|.+||+|+++-
T Consensus        32 G~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v~~~~~a~~~aDi~vTaTG----n~~vI~~~h~~~MKdgaIl~  107 (163)
T d1v8ba1          32 GDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTG----NVDVIKLEHLLKMKNNAVVG  107 (163)
T ss_dssp             SHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECCS----SSSSBCHHHHTTCCTTCEEE
T ss_pred             cccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCccCchhHccccCcEEEEcCC----CCccccHHHHHHhhCCeEEE
Confidence            455554     3456666666666553111   12678999999999999998865    44699999999999999999


Q ss_pred             ecCCCC-ccCHHHHHH
Q psy5266          84 NTSRGG-LLDQEALVE   98 (180)
Q Consensus        84 n~~Rg~-~vd~~al~~   98 (180)
                      |+++-. -+|.++|.+
T Consensus       108 N~GHfd~EIdv~~L~~  123 (163)
T d1v8ba1         108 NIGHFDDEIQVNELFN  123 (163)
T ss_dssp             ECSSTTTSBCHHHHHT
T ss_pred             eccccchhhhhHHHHh
Confidence            998764 477776654

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.84  E-value=0.00025  Score=50.99  Aligned_cols=103  Identities=17%  Similarity=0.145  Sum_probs=73.3

Q ss_pred             cCCcccc---ce--eeeEEEeccccccCCc----cceeeccCHHHHhccCCEEEEccCCCCCCccee-C-HhHHhccCCC
Q psy5266          11 TGTPGQV---HL--IVCVLIRYHVDLTGGS----KQVYLILVIRTRSAQSDFIFVTCALTKDTEQLI-G-RKQFSLMKPT   79 (180)
Q Consensus        11 ~G~iG~~---~~--~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glI-g-~~~i~~mk~g   79 (180)
                      +|.+|+.   ++  =|-.+..||.+.....    .......+.+|+.++||+|++++|-.+....++ + .+.+..+++|
T Consensus         8 lG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~~~~~~~g   87 (161)
T d1vpda2           8 LGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPG   87 (161)
T ss_dssp             CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCTT
T ss_pred             hhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcchhhccCCC
Confidence            5777775   11  1345677877665311    233467789999999999999999777766655 2 3567789999


Q ss_pred             cEEEecCCCCccCHHHHHHHHhcCCcceEEeecC
Q psy5266          80 AILINTSRGGLLDQEALVEFLRDKKIGGAGLDVM  113 (180)
Q Consensus        80 ~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~  113 (180)
                      .++|+.+-...-....+.+.+++..+..+-.+++
T Consensus        88 ~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapv~  121 (161)
T d1vpda2          88 TVLIDMSSIAPLASREISDALKAKGVEMLDAPVS  121 (161)
T ss_dssp             CEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEE
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHcCCceeccccc
Confidence            9999998776666677888888888865554444

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.91  E-value=0.0036  Score=45.62  Aligned_cols=69  Identities=12%  Similarity=0.204  Sum_probs=52.1

Q ss_pred             ceeeeEEEeccccccCC-------ccce---e-eccCHHHHhccCCEEEEccCC-CCCCcceeCHhHHhccCCCcEEEec
Q psy5266          18 HLIVCVLIRYHVDLTGG-------SKQV---Y-LILVIRTRSAQSDFIFVTCAL-TKDTEQLIGRKQFSLMKPTAILINT   85 (180)
Q Consensus        18 ~~~~~~~~~~~~~~~~~-------~~~~---~-~~~~l~~l~~~~D~v~~h~pl-~~~T~glIg~~~i~~mk~g~~lvn~   85 (180)
                      +.+|+.+..||.+....       ....   + ....+++.+++||+|+-.+=. ..+.-.+|.++.+++||+|+++|.+
T Consensus        52 ~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~aP~lIt~~mv~~Mk~GSVIVDv  131 (168)
T d1pjca1          52 VGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDV  131 (168)
T ss_dssp             HHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEET
T ss_pred             hhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCcccCeeecHHHHhhcCCCcEEEEe
Confidence            35888999999886641       1111   1 233689999999999766554 3668899999999999999999987


Q ss_pred             C
Q psy5266          86 S   86 (180)
Q Consensus        86 ~   86 (180)
                      +
T Consensus       132 a  132 (168)
T d1pjca1         132 A  132 (168)
T ss_dssp             T
T ss_pred             e
Confidence            4

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.86  E-value=0.00079  Score=48.36  Aligned_cols=101  Identities=11%  Similarity=0.110  Sum_probs=72.2

Q ss_pred             cCCcccccee-------eeEEEeccccccC----CccceeeccCHHHHhccCCEEEEccCCCCCCccee--CHhHHhccC
Q psy5266          11 TGTPGQVHLI-------VCVLIRYHVDLTG----GSKQVYLILVIRTRSAQSDFIFVTCALTKDTEQLI--GRKQFSLMK   77 (180)
Q Consensus        11 ~G~iG~~~~~-------~~~~~~~~~~~~~----~~~~~~~~~~l~~l~~~~D~v~~h~pl~~~T~glI--g~~~i~~mk   77 (180)
                      +|.+|..  +       |-.+..||.+...    .........++.|.+..+|+|++++|-.+....++  ..+.+..++
T Consensus         9 lG~MG~~--iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~~~~l~   86 (162)
T d3cuma2           9 LGHMGAP--MATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGLLAHIA   86 (162)
T ss_dssp             CSTTHHH--HHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCHHHHSC
T ss_pred             EHHHHHH--HHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhccccccccCC
Confidence            5777775  2       2355677766554    11233566789999999999999999776655544  244677789


Q ss_pred             CCcEEEecCCCCccCHHHHHHHHhcCCcceEEeecC
Q psy5266          78 PTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVM  113 (180)
Q Consensus        78 ~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~  113 (180)
                      +|.++|+++-...-....+.+.+++..+.+.-.+|+
T Consensus        87 ~g~iiid~st~~p~~~~~~~~~~~~~gi~~~dapv~  122 (162)
T d3cuma2          87 PGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVS  122 (162)
T ss_dssp             TTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEE
T ss_pred             CCCEEEECCCCCHHHHHHHHHHHHHCCCcEEecccc
Confidence            999999998877666778888998888865555444

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=95.08  E-value=0.022  Score=43.58  Aligned_cols=68  Identities=10%  Similarity=0.028  Sum_probs=55.1

Q ss_pred             eeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccCHHHHHHHHhcCCcce
Q psy5266          39 YLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGG  107 (180)
Q Consensus        39 ~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~  107 (180)
                      ....+..|..++||+|++++|-.+.+..++ .+....+++|+++++++-........+.+.+++..+..
T Consensus       130 ~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi-~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~v  197 (242)
T d2b0ja2         130 KVTSDDREAVEGADIVITWLPKGNKQPDII-KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNI  197 (242)
T ss_dssp             EEESCHHHHHTTCSEEEECCTTCTTHHHHH-HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEE
T ss_pred             EEECCHHHHHhcCCeEEEeeecHHHHHHHH-HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCEE
Confidence            345789999999999999999666677787 67778899999999988876666667777787777643

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=93.75  E-value=0.0071  Score=42.86  Aligned_cols=75  Identities=17%  Similarity=0.109  Sum_probs=47.6

Q ss_pred             cCCcccccee-------eeEEEeccccccCC----ccc-eeeccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCC
Q psy5266          11 TGTPGQVHLI-------VCVLIRYHVDLTGG----SKQ-VYLILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKP   78 (180)
Q Consensus        11 ~G~iG~~~~~-------~~~~~~~~~~~~~~----~~~-~~~~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~   78 (180)
                      +|.+|+.  +       |-.+.+||++....    ..+ .....+..+.+++||+|++++|.. .+..++. +....+++
T Consensus         8 ~G~mG~~--lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~~-~~~~vl~-~l~~~l~~   83 (165)
T d2f1ka2           8 LGLIGAS--LAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQ-LILPTLE-KLIPHLSP   83 (165)
T ss_dssp             CSHHHHH--HHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCHH-HHHHHHH-HHGGGSCT
T ss_pred             ecHHHHH--HHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcHh-hhhhhhh-hhhhhccc
Confidence            4666664  3       34567777764321    111 113334456789999999999954 5666663 45566888


Q ss_pred             CcEEEecCCCC
Q psy5266          79 TAILINTSRGG   89 (180)
Q Consensus        79 g~~lvn~~Rg~   89 (180)
                      +.++++++-..
T Consensus        84 ~~iv~~~~s~~   94 (165)
T d2f1ka2          84 TAIVTDVASVK   94 (165)
T ss_dssp             TCEEEECCSCC
T ss_pred             ccceeeccccc
Confidence            99999986543

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=92.60  E-value=0.0082  Score=43.25  Aligned_cols=72  Identities=18%  Similarity=0.179  Sum_probs=57.0

Q ss_pred             ccCHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccCHHHHHHHHhcCCcceEEeecC
Q psy5266          41 ILVIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVM  113 (180)
Q Consensus        41 ~~~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~  113 (180)
                      ..++.+....+|.+++.+|-.+...-.+ .+.+..+++|.++|+.+-...-+...+.+.+++..+.....+|+
T Consensus        57 ~~~~~~~~~~~~~ii~~~~~~~~v~~v~-~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ldapvs  128 (176)
T d2pgda2          57 LEEMVSKLKKPRRIILLVKAGQAVDNFI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVS  128 (176)
T ss_dssp             HHHHHHHBCSSCEEEECSCTTHHHHHHH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             hhhhhhhhcccceEEEecCchHHHHHHH-HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceeccccc
Confidence            4467788889999999999776665554 46778899999999998887777778888888888866666565

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=91.93  E-value=0.14  Score=37.38  Aligned_cols=50  Identities=22%  Similarity=0.364  Sum_probs=38.3

Q ss_pred             CHHHHhccCCEEEEccCC-CCCCcceeCHhHHhccCCCcEEEecC--CCCccC
Q psy5266          43 VIRTRSAQSDFIFVTCAL-TKDTEQLIGRKQFSLMKPTAILINTS--RGGLLD   92 (180)
Q Consensus        43 ~l~~l~~~~D~v~~h~pl-~~~T~glIg~~~i~~mk~g~~lvn~~--Rg~~vd   92 (180)
                      .|.+.+++||+|+-..=. ..+.--+|.++.++.||+|+++|..+  .|+.+.
T Consensus       107 ~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaidqGGn~E  159 (183)
T d1l7da1         107 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCP  159 (183)
T ss_dssp             HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSST
T ss_pred             HHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeecCCCccc
Confidence            366778899999754433 34577889999999999999999774  566554

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.20  E-value=0.38  Score=33.29  Aligned_cols=121  Identities=12%  Similarity=0.028  Sum_probs=69.1

Q ss_pred             cCCcccc-------ceeeeEEEeccccccCCc----cce--eeccCHH-HHhccCCEEEEccCCCCCCcceeCHhHHhcc
Q psy5266          11 TGTPGQV-------HLIVCVLIRYHVDLTGGS----KQV--YLILVIR-TRSAQSDFIFVTCALTKDTEQLIGRKQFSLM   76 (180)
Q Consensus        11 ~G~iG~~-------~~~~~~~~~~~~~~~~~~----~~~--~~~~~l~-~l~~~~D~v~~h~pl~~~T~glIg~~~i~~m   76 (180)
                      .|.||..       .++..++.+||++.....    .+.  ....+.+ .....+|+|++++|.. .+..++. +....+
T Consensus         9 ~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~~-~~~~vl~-~l~~~~   86 (171)
T d2g5ca2           9 VGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFREIAK-KLSYIL   86 (171)
T ss_dssp             CSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH-HHHHHHH-HHHHHS
T ss_pred             cCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCch-hhhhhhh-hhhccc
Confidence            4667775       133446777777654211    111  1223333 3345899999999943 3444552 344558


Q ss_pred             CCCcEEEecCCCCccCHHHHHHHHhcCCcceEEeecCCCC-CCCCCCCCCCCCceeec
Q psy5266          77 KPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVMIPE-PLPADHPLVQLDNCGNG  133 (180)
Q Consensus        77 k~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~~~e-p~~~~~~l~~~~Nv~~g  133 (180)
                      +++++++.++.....-.+++.+.+...-+.+--+.-.+.. |......|++-.+++++
T Consensus        87 ~~~~ii~d~~s~k~~~~~~~~~~~~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~  144 (171)
T d2g5ca2          87 SEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILT  144 (171)
T ss_dssp             CTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEEC
T ss_pred             cccccccccccccHHHHHHHHHhhcccccccccccccccccHHHHHHHhhCCCeEEEe
Confidence            8899999988765555667777777654433333333222 22334556776777765

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=85.23  E-value=0.23  Score=36.51  Aligned_cols=88  Identities=11%  Similarity=0.093  Sum_probs=57.6

Q ss_pred             cCCcccc-----ceeeeEEEeccccccCCccc---eeeccCHHHHhc-cCCEEEEccCCCCCCcceeCHhHHhccCCCcE
Q psy5266          11 TGTPGQV-----HLIVCVLIRYHVDLTGGSKQ---VYLILVIRTRSA-QSDFIFVTCALTKDTEQLIGRKQFSLMKPTAI   81 (180)
Q Consensus        11 ~G~iG~~-----~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~l~~-~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~   81 (180)
                      .|++|+.     |-.|+++..+|.+.....+.   -....+.+++++ .|||++-|     .+-+.|+.+.+.++|.. .
T Consensus        35 ~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~~~~~~~~~~~DI~iPc-----A~~~~I~~~~a~~i~ak-~  108 (201)
T d1c1da1          35 LGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPC-----AMGGVITTEVARTLDCS-V  108 (201)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGGGCCCSEEEEC-----SCSCCBCHHHHHHCCCS-E
T ss_pred             CCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhcccccCccccccccceeeecc-----cccccccHHHHhhhhhh-e
Confidence            4666663     34578888888765532211   135667788887 78988865     46689999999999732 4


Q ss_pred             EEecCCCCccCHHHHHHHHhcCCc
Q psy5266          82 LINTSRGGLLDQEALVEFLRDKKI  105 (180)
Q Consensus        82 lvn~~Rg~~vd~~al~~~L~~~~i  105 (180)
                      ++..+-+.+.++ +..+.|++..|
T Consensus       109 i~e~AN~p~~~~-~~~~~L~~rgI  131 (201)
T d1c1da1         109 VAGAANNVIADE-AASDILHARGI  131 (201)
T ss_dssp             ECCSCTTCBCSH-HHHHHHHHTTC
T ss_pred             eeccCCCCcchh-hHHHHhcccce
Confidence            444444555444 45677777776

>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=83.98  E-value=0.95  Score=32.82  Aligned_cols=67  Identities=24%  Similarity=0.373  Sum_probs=50.2

Q ss_pred             ccCHHHHhccCCEEE-EccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccCHHHHHHHHhcCCcceEEeecC
Q psy5266          41 ILVIRTRSAQSDFIF-VTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVM  113 (180)
Q Consensus        41 ~~~l~~l~~~~D~v~-~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~  113 (180)
                      ..+-++++.++|+|+ +..|+..+    .+.+.+.+||+|+++|..--  .....++.+.|.+.++...+++..
T Consensus        58 ~~~~~~~~~~~diilkV~~P~~~e----~~~~ei~~lk~g~~li~~l~--p~~~~~~~~~l~~~~it~~a~e~i  125 (194)
T d1l7da2          58 ASTAAQALSQADVVWKVQRPMTAE----EGTDEVALIKEGAVLMCHLG--ALTNRPVVEALTKRKITAYAMELM  125 (194)
T ss_dssp             ESSHHHHHSSCSEEEEEECCCCGG----GSCCGGGGSCTTCEEEEECC--GGGCHHHHHHHHHTTCEEEEGGGC
T ss_pred             chhhhhhhhcccceeEecCCcccc----cchhHhhhccCceEEEEecc--cccchhHHHHHHhcCceEEeeecc
Confidence            456789999999875 66675543    34567889999999997532  234567788888889998888875

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=83.06  E-value=0.39  Score=33.13  Aligned_cols=70  Identities=19%  Similarity=0.259  Sum_probs=53.3

Q ss_pred             CHHHHhccCCEEEEccCCCCCCcceeCHhHHhccCCCcEEEecCCCCccCHHHHHHHHhcCCcceEEeecC
Q psy5266          43 VIRTRSAQSDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLRDKKIGGAGLDVM  113 (180)
Q Consensus        43 ~l~~l~~~~D~v~~h~pl~~~T~glIg~~~i~~mk~g~~lvn~~Rg~~vd~~al~~~L~~~~i~~~~lDv~  113 (180)
                      +..+.+.++|++++++|-..+.... ..+.+..++++.++|+.+....-....+.+.+++..+..+-.+|+
T Consensus        47 ~~~~~~~~~~~~i~~~~~~~~v~~~-~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldapVs  116 (156)
T d2cvza2          47 VPLERVAEARVIFTCLPTTREVYEV-AEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVS  116 (156)
T ss_dssp             CCGGGGGGCSEEEECCSSHHHHHHH-HHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEE
T ss_pred             cccccccceeEEEecccchhhhhhh-hccccccccccccccccccCCHHHHHHHHHHHHHcCCeEEecccc
Confidence            3456667899999999976655443 346677899999999998887777778999999988865555554