Psyllid ID: psy5270

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350--
Protein Sequence
MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQSWYRR
Secondary Structure (PSIPRED)
cccccEEEccccccccccHHHHccccccEEEccccccccccccccccccccEEEccccccccccHHHcccccccEEEccccccccccccHHHHccccccEEcccccccccccHHHHHccccHHHHHcccccHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccHHHHccccccEEEccccccccccHHHHccccccEEccccccccccHHHHcccccccEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccEEEEccccccccccHHHcccccccEEEccccccccccHHHHHHHHccEEEccccccccccHHHHHHHcccEEEccccccccccccHHHHHHHcccEEEccccccccccHHHHHcHHHHHHHHHHHHHHHHcccEEEEEEccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHccccEEEccccccccccHHHHcHHHHHHHHcccEEEcccccccHccccHHHHHHHcccEEEccccccccccHHHHHHHcccEEEccccccccccccccccEEEEEEEEEcccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MLYITRitlshnklkeippglanlVNLEILTLFNNQietlptslsslpklriLNLGmnrlsslprgfgafpVLEVLDLTynnlneqslpgnfFMLETLRALYlgdndfevlpaeignLKNLQIILETFLpdmmeknrghivgissmagivglpnlvpycASKFAVRGLMEALAEELREDARnskikftsifpfmvdtglcknpkikmnrlsslprgfgafpvleafsfttILDLtynnlneqslpgnfFMLETLRALYlgdndfevlpaeignlknlqimleprwvismgscangggyyhysysvvrgcdriipvdiyvpgcpptAEALMYGILQLQKKVKRMKILQSWYRR
Flexible Loop (DISEMBL)
mlyitritlshnklkeippgLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQSWYRR
Low Complexity Region (SEG)
MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIEtlptslsslpKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVrglmealaeelredarNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIMLEPRWVISMGSCANgggyyhysysvvrgCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQSWYRR
Disordered region (IsUnstruct)
**YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQSWY**
Disordered Region (DISOPRED)
MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQK**KRMKILQSWY**
Disordered Region (DISEMBL)
MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQSWYRR
Disordered Region (DISPRO)
MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQSWYRR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQSWYRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	352	2.2.26 [Sep-21-2011]
Q5E9C0	277	Ras suppressor protein 1	yes	N/A	0.329	0.418	0.704	1e-43
Q15404	277	Ras suppressor protein 1	yes	N/A	0.329	0.418	0.696	8e-43
Q01730	277	Ras suppressor protein 1	yes	N/A	0.335	0.425	0.677	4e-42
P42026	216	NADH dehydrogenase [ubiqu	no	N/A	0.207	0.337	0.863	8e-34
Q0MQI0	213	NADH dehydrogenase [ubiqu	no	N/A	0.207	0.342	0.835	2e-33
P0CB83	213	NADH dehydrogenase [ubiqu	no	N/A	0.207	0.342	0.835	2e-33
P0CB84	213	NADH dehydrogenase [ubiqu	N/A	N/A	0.207	0.342	0.835	2e-33
Q0MQH9	213	NADH dehydrogenase [ubiqu	N/A	N/A	0.207	0.342	0.835	2e-33
O75251	213	NADH dehydrogenase [ubiqu	no	N/A	0.207	0.342	0.835	2e-33
Q9DC70	224	NADH dehydrogenase [ubiqu	no	N/A	0.207	0.325	0.835	3e-33

>sp|Q5E9C0|RSU1_BOVIN Ras suppressor protein 1 OS=Bos taurus GN=RSU1 PE=2 SV=1

 Score =  177 bits (448), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 86/122 (70%), Positives = 100/122 (81%)

Query: 3   YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSS 62
           +IT++ LSHNKL  +PP +A L NLE+L  FNNQIE LPT +SSL KL+ LNLGMNRL++
Sbjct: 41  HITQLVLSHNKLTTVPPNIAELKNLEVLNFFNNQIEELPTQISSLQKLKHLNLGMNRLNT 100

Query: 63  LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 122
           LPRGFG+ P LEVLDLTYNNLNE SLPGNFF L TLRALYL DNDFE+LP +IG L  LQ
Sbjct: 101 LPRGFGSLPALEVLDLTYNNLNENSLPGNFFYLTTLRALYLSDNDFEILPPDIGKLTKLQ 160

Query: 123 II 124
           I+
Sbjct: 161 IL 162

Potentially plays a role in the Ras signal transduction pathway. Capable of suppressing v-Ras transformation in vitro.
Bos taurus (taxid: 9913)

>sp|Q15404|RSU1_HUMAN Ras suppressor protein 1 OS=Homo sapiens GN=RSU1 PE=1 SV=3

 Score =  174 bits (442), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 85/122 (69%), Positives = 100/122 (81%)

Query: 3   YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSS 62
           +IT++ LSHNKL  +PP +A L NLE+L  FNNQIE LPT +SSL KL+ LNLGMNRL++
Sbjct: 41  HITQLVLSHNKLTMVPPNIAELKNLEVLNFFNNQIEELPTQISSLQKLKHLNLGMNRLNT 100

Query: 63  LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 122
           LPRGFG+ P LEVLDLTYNNL+E SLPGNFF L TLRALYL DNDFE+LP +IG L  LQ
Sbjct: 101 LPRGFGSLPALEVLDLTYNNLSENSLPGNFFYLTTLRALYLSDNDFEILPPDIGKLTKLQ 160

Query: 123 II 124
           I+
Sbjct: 161 IL 162

Potentially plays a role in the Ras signal transduction pathway. Capable of suppressing v-Ras transformation in vitro.

Homo sapiens (taxid: 9606)

>sp|Q01730|RSU1_MOUSE Ras suppressor protein 1 OS=Mus musculus GN=Rsu1 PE=2 SV=3

 Score =  172 bits (435), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 84/124 (67%), Positives = 101/124 (81%)

Query: 1   MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRL 60
           + +IT++ LSHNKL  +PP +A L NLE+L  FNNQIE LPT +SSL KL+ LNLGMNRL
Sbjct: 39  LAHITQLVLSHNKLTTVPPNVAELKNLEVLNFFNNQIEELPTQISSLQKLKHLNLGMNRL 98

Query: 61  SSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKN 120
           ++LPRGFG+  +LEVL+LTYNNLNE SLPGNFF L TLRALYL DNDFE+LP +IG L  
Sbjct: 99  NTLPRGFGSSRLLEVLELTYNNLNEHSLPGNFFYLTTLRALYLSDNDFEILPPDIGKLTK 158

Query: 121 LQII 124
           LQI+
Sbjct: 159 LQIL 162

Potentially plays a role in the Ras signal transduction pathway. Capable of suppressing v-Ras transformation in vitro.

Mus musculus (taxid: 10090)

>sp|P42026|NDUS7_BOVIN NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Bos taurus GN=NDUFS7 PE=1 SV=1

 Score =  144 bits (364), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 63/73 (86%), Positives = 69/73 (94%)

Query: 280 MLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKK 339
           M EPR+V+SMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YGILQLQKK
Sbjct: 144 MPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKK 203

Query: 340 VKRMKILQSWYRR 352
           +KR K L+ WYRR
Sbjct: 204 IKREKRLRIWYRR 216

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|Q0MQI0|NDUS7_PANTR NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Pan troglodytes GN=NDUFS7 PE=2 SV=1

 Score =  143 bits (361), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 61/73 (83%), Positives = 69/73 (94%)

Query: 280 MLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKK 339
           M EPR+V+SMGSCANGGGYYHYSYSVVRGCDRI+PVDIY+PGCPPTAEAL+YGILQLQ+K
Sbjct: 141 MPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRK 200

Query: 340 VKRMKILQSWYRR 352
           +KR + LQ WYRR
Sbjct: 201 IKRERRLQIWYRR 213

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pan troglodytes (taxid: 9598)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|P0CB83|NDUS7_PONAB NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Pongo abelii GN=NDUFS7 PE=2 SV=1

 Score =  143 bits (361), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 61/73 (83%), Positives = 69/73 (94%)

Query: 280 MLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKK 339
           M EPR+V+SMGSCANGGGYYHYSYSVVRGCDRI+PVDIY+PGCPPTAEAL+YGILQLQ+K
Sbjct: 141 MPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRK 200

Query: 340 VKRMKILQSWYRR 352
           +KR + LQ WYRR
Sbjct: 201 IKRERRLQIWYRR 213

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|P0CB84|NDUS7_PONPY NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Pongo pygmaeus GN=NDUFS7 PE=2 SV=1

 Score =  143 bits (361), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 61/73 (83%), Positives = 69/73 (94%)

Query: 280 MLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKK 339
           M EPR+V+SMGSCANGGGYYHYSYSVVRGCDRI+PVDIY+PGCPPTAEAL+YGILQLQ+K
Sbjct: 141 MPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRK 200

Query: 340 VKRMKILQSWYRR 352
           +KR + LQ WYRR
Sbjct: 201 IKRERRLQIWYRR 213

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo pygmaeus (taxid: 9600)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|Q0MQH9|NDUS7_GORGO NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS7 PE=2 SV=1

 Score =  143 bits (361), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 61/73 (83%), Positives = 69/73 (94%)

Query: 280 MLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKK 339
           M EPR+V+SMGSCANGGGYYHYSYSVVRGCDRI+PVDIY+PGCPPTAEAL+YGILQLQ+K
Sbjct: 141 MPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRK 200

Query: 340 VKRMKILQSWYRR 352
           +KR + LQ WYRR
Sbjct: 201 IKRERRLQIWYRR 213

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gorilla gorilla gorilla (taxid: 9595)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|O75251|NDUS7_HUMAN NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Homo sapiens GN=NDUFS7 PE=1 SV=3

 Score =  143 bits (361), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 61/73 (83%), Positives = 69/73 (94%)

Query: 280 MLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKK 339
           M EPR+V+SMGSCANGGGYYHYSYSVVRGCDRI+PVDIY+PGCPPTAEAL+YGILQLQ+K
Sbjct: 141 MPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRK 200

Query: 340 VKRMKILQSWYRR 352
           +KR + LQ WYRR
Sbjct: 201 IKRERRLQIWYRR 213

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|Q9DC70|NDUS7_MOUSE NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Mus musculus GN=Ndufs7 PE=1 SV=1

 Score =  142 bits (359), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 61/73 (83%), Positives = 69/73 (94%)

Query: 280 MLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKK 339
           M EPR+V+SMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YGILQLQ+K
Sbjct: 152 MPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRK 211

Query: 340 VKRMKILQSWYRR 352
           +KR + L+ WYRR
Sbjct: 212 IKREQKLKIWYRR 224

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	352
321461540	271	hypothetical protein DAPPUDRAFT_200985 [	0.323	0.420	0.8	2e-50
91076586	284	PREDICTED: similar to icarus CG9031-PA [	0.338	0.419	0.8	1e-49
270002622	270	hypothetical protein TcasGA2_TC004946 [T	0.338	0.440	0.8	1e-49
350405379	503	PREDICTED: ras suppressor protein 1-like	0.338	0.236	0.784	3e-49
193613134	287	PREDICTED: ras suppressor protein 1-like	0.292	0.358	0.792	3e-49
239790406	199	ACYPI003499 [Acyrthosiphon pisum]	0.292	0.517	0.792	4e-49
383862509	283	PREDICTED: ras suppressor protein 1-like	0.323	0.402	0.792	5e-49
340726496	294	PREDICTED: ras suppressor protein 1-like	0.323	0.387	0.784	6e-49
328778234	290	PREDICTED: ras suppressor protein 1 [Api	0.323	0.393	0.784	6e-49
380024743	283	PREDICTED: LOW QUALITY PROTEIN: ras supp	0.323	0.402	0.784	7e-49

>gi|321461540|gb|EFX72571.1| hypothetical protein DAPPUDRAFT_200985 [Daphnia pulex]

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 100/125 (80%), Positives = 114/125 (91%)

Query: 1   MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRL 60
           ML +TRITL+HN++  + P LANL NLEIL LFNNQ+E LPTSLSS+PKLRILNLGMN+L
Sbjct: 38  MLNLTRITLTHNRISVVTPALANLTNLEILNLFNNQVEELPTSLSSMPKLRILNLGMNKL 97

Query: 61  SSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKN 120
           S+LPRGFGAFPVLEVLDLTYNNLNE SLPGNFFM+ETLRALYLGDNDFE +P EIG+LKN
Sbjct: 98  SALPRGFGAFPVLEVLDLTYNNLNESSLPGNFFMIETLRALYLGDNDFERIPPEIGHLKN 157

Query: 121 LQIIL 125
           LQI++
Sbjct: 158 LQILV 162

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91076586|ref|XP_968109.1| PREDICTED: similar to icarus CG9031-PA [Tribolium castaneum]

 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 100/125 (80%), Positives = 111/125 (88%)

Query: 1   MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRL 60
           M YITR+TLSHNK+K +PP LANL NLEIL L NN IE LP SLSS+PKLRILNL +NRL
Sbjct: 52  MTYITRLTLSHNKIKSVPPALANLTNLEILNLTNNHIEELPLSLSSMPKLRILNLAINRL 111

Query: 61  SSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKN 120
            +LPRGFGAFPVLEVLDLTYNNLNE+SLPGNFFM+ETLRALYLGDNDFE LP E+ NLKN
Sbjct: 112 YNLPRGFGAFPVLEVLDLTYNNLNEKSLPGNFFMMETLRALYLGDNDFEYLPPEVKNLKN 171

Query: 121 LQIIL 125
           LQI++
Sbjct: 172 LQILV 176

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270002622|gb|EEZ99069.1| hypothetical protein TcasGA2_TC004946 [Tribolium castaneum]

 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 100/125 (80%), Positives = 111/125 (88%)

Query: 1   MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRL 60
           M YITR+TLSHNK+K +PP LANL NLEIL L NN IE LP SLSS+PKLRILNL +NRL
Sbjct: 38  MTYITRLTLSHNKIKSVPPALANLTNLEILNLTNNHIEELPLSLSSMPKLRILNLAINRL 97

Query: 61  SSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKN 120
            +LPRGFGAFPVLEVLDLTYNNLNE+SLPGNFFM+ETLRALYLGDNDFE LP E+ NLKN
Sbjct: 98  YNLPRGFGAFPVLEVLDLTYNNLNEKSLPGNFFMMETLRALYLGDNDFEYLPPEVKNLKN 157

Query: 121 LQIIL 125
           LQI++
Sbjct: 158 LQILV 162

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350405379|ref|XP_003487417.1| PREDICTED: ras suppressor protein 1-like [Bombus impatiens]

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 98/125 (78%), Positives = 111/125 (88%)

Query: 1   MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRL 60
           M+ ITR+TLSHNK++ +PPGLANLVNLEIL LFNN I  LP SLS +PKLRILN+GMNRL
Sbjct: 271 MINITRLTLSHNKIQAVPPGLANLVNLEILNLFNNHITELPISLSQMPKLRILNVGMNRL 330

Query: 61  SSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKN 120
             LPRGFGAFPVLEVLDLTYNNL+E++LPGNFFM+ETLRALYL DNDFE LP EIG LKN
Sbjct: 331 DVLPRGFGAFPVLEVLDLTYNNLSEKNLPGNFFMMETLRALYLADNDFEYLPPEIGQLKN 390

Query: 121 LQIIL 125
           LQI++
Sbjct: 391 LQILV 395

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193613134|ref|XP_001951023.1| PREDICTED: ras suppressor protein 1-like [Acyrthosiphon pisum]

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 99/125 (79%), Positives = 111/125 (88%)

Query: 1   MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRL 60
           M  ITRITLSHNK++++PPG+ANL  LE+L LFNN IE LP SLSS+PKLRILN+GMNRL
Sbjct: 52  MHNITRITLSHNKIQKVPPGIANLTQLEMLNLFNNHIEELPVSLSSMPKLRILNVGMNRL 111

Query: 61  SSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKN 120
            SLPRGFGAF VLEVLDLTYNNL+E SLPGNFFMLETLRALYLGDNDFE +P EIG LKN
Sbjct: 112 DSLPRGFGAFAVLEVLDLTYNNLSETSLPGNFFMLETLRALYLGDNDFETIPPEIGQLKN 171

Query: 121 LQIIL 125
           LQI++
Sbjct: 172 LQILV 176

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239790406|dbj|BAH71767.1| ACYPI003499 [Acyrthosiphon pisum]

 Score =  201 bits (512), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 99/125 (79%), Positives = 111/125 (88%)

Query: 1   MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRL 60
           M  ITRITLSHNK++++PPG+ANL  LE+L LFNN IE LP SLSS+PKLRILN+GMNRL
Sbjct: 38  MHNITRITLSHNKIQKVPPGIANLTQLEMLNLFNNHIEELPVSLSSMPKLRILNVGMNRL 97

Query: 61  SSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKN 120
            SLPRGFGAF VLEVLDLTYNNL+E SLPGNFFMLETLRALYLGDNDFE +P EIG LKN
Sbjct: 98  DSLPRGFGAFAVLEVLDLTYNNLSETSLPGNFFMLETLRALYLGDNDFETIPPEIGQLKN 157

Query: 121 LQIIL 125
           LQI++
Sbjct: 158 LQILV 162

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862509|ref|XP_003706726.1| PREDICTED: ras suppressor protein 1-like [Megachile rotundata]

 Score =  201 bits (511), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 99/125 (79%), Positives = 111/125 (88%)

Query: 1   MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRL 60
           M+ ITR+TLSHNKL+ +PPGLANLVNLEIL LFNN I  LP SLS +PKLRILN+GMNRL
Sbjct: 51  MINITRLTLSHNKLQAVPPGLANLVNLEILNLFNNHITELPISLSQMPKLRILNVGMNRL 110

Query: 61  SSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKN 120
             LPRGFGAFPVLEVLDLTYNNL+E++LPGNFFM+ETLRALYL DNDFE LP EIG LKN
Sbjct: 111 DVLPRGFGAFPVLEVLDLTYNNLSEKNLPGNFFMMETLRALYLADNDFEYLPPEIGQLKN 170

Query: 121 LQIIL 125
           LQI++
Sbjct: 171 LQILV 175

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340726496|ref|XP_003401593.1| PREDICTED: ras suppressor protein 1-like [Bombus terrestris]

 Score =  201 bits (510), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 98/125 (78%), Positives = 111/125 (88%)

Query: 1   MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRL 60
           M+ ITR+TLSHNK++ +PPGLANLVNLEIL LFNN I  LP SLS +PKLRILN+GMNRL
Sbjct: 51  MINITRLTLSHNKIQAVPPGLANLVNLEILNLFNNHITELPISLSQMPKLRILNVGMNRL 110

Query: 61  SSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKN 120
             LPRGFGAFPVLEVLDLTYNNL+E++LPGNFFM+ETLRALYL DNDFE LP EIG LKN
Sbjct: 111 DVLPRGFGAFPVLEVLDLTYNNLSEKNLPGNFFMMETLRALYLADNDFEYLPPEIGQLKN 170

Query: 121 LQIIL 125
           LQI++
Sbjct: 171 LQILV 175

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328778234|ref|XP_395612.3| PREDICTED: ras suppressor protein 1 [Apis mellifera]

 Score =  201 bits (510), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 98/125 (78%), Positives = 111/125 (88%)

Query: 1   MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRL 60
           M+ ITR+TLSHNK++ +PPGLANLVNLEIL LFNN I  LP SLS +PKLRILN+GMNRL
Sbjct: 58  MINITRLTLSHNKIQAVPPGLANLVNLEILNLFNNHITELPISLSQMPKLRILNVGMNRL 117

Query: 61  SSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKN 120
             LPRGFGAFPVLEVLDLTYNNL+E++LPGNFFM+ETLRALYL DNDFE LP EIG LKN
Sbjct: 118 DVLPRGFGAFPVLEVLDLTYNNLSEKNLPGNFFMMETLRALYLADNDFEYLPPEIGQLKN 177

Query: 121 LQIIL 125
           LQI++
Sbjct: 178 LQILV 182

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380024743|ref|XP_003696151.1| PREDICTED: LOW QUALITY PROTEIN: ras suppressor protein 1-like [Apis florea]

 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 98/125 (78%), Positives = 111/125 (88%)

Query: 1   MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRL 60
           M+ ITR+TLSHNK++ +PPGLANLVNLEIL LFNN I  LP SLS +PKLRILN+GMNRL
Sbjct: 51  MINITRLTLSHNKIQAVPPGLANLVNLEILNLFNNHITELPISLSQMPKLRILNVGMNRL 110

Query: 61  SSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKN 120
             LPRGFGAFPVLEVLDLTYNNL+E++LPGNFFM+ETLRALYL DNDFE LP EIG LKN
Sbjct: 111 DVLPRGFGAFPVLEVLDLTYNNLSEKNLPGNFFMMETLRALYLADNDFEYLPPEIGQLKN 170

Query: 121 LQIIL 125
           LQI++
Sbjct: 171 LQILV 175

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	352
FB|FBgn0028546	283	ics "icarus" [Drosophila melan	0.352	0.438	0.693	2.3e-46
UNIPROTKB|E2R9R1	277	RSU1 "Uncharacterized protein"	0.346	0.440	0.655	2.9e-44
UNIPROTKB|Q5E9C0	277	RSU1 "Ras suppressor protein 1	0.346	0.440	0.655	2.9e-44
UNIPROTKB|Q15404	277	RSU1 "Ras suppressor protein 1	0.346	0.440	0.647	1.2e-43
RGD|1591781	247	Rsu1 "Ras suppressor protein 1	0.352	0.502	0.645	1.6e-43
UNIPROTKB|E1BS02	277	RSU1 "Uncharacterized protein"	0.346	0.440	0.639	3.2e-43
UNIPROTKB|E1BWI3	204	RSU1 "Uncharacterized protein"	0.346	0.598	0.639	3.2e-43
MGI|MGI:103040	277	Rsu1 "Ras suppressor protein 1	0.352	0.447	0.629	8.5e-43
UNIPROTKB|Q09497	268	rsu-1 "Protein RSU-1" [Caenorh	0.346	0.455	0.663	1.6e-40
FB|FBgn0030718	221	CG9172 [Drosophila melanogaste	0.207	0.330	0.739	2.9e-25

FB|FBgn0028546 ics "icarus" [Drosophila melanogaster (taxid:7227)]

 Score = 438 (159.2 bits), Expect = 2.3e-46, Sum P(2) = 2.3e-46
 Identities = 86/124 (69%), Positives = 99/124 (79%)

Query:     1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIEXXXXXXXXXXKLRILNLGMNRL 60
             M  ITR+TLSHNK+  I PG+ANL+NLEIL L NNQ+           KLRILN+ +NRL
Sbjct:    49 MSNITRLTLSHNKISVISPGIANLLNLEILNLSNNQLTELPVSLSSMPKLRILNVSINRL 108

Query:    61 SSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKN 120
              +LPRGFGAFPVLEVLDL+YNNLNEQ LPGNFF +ETLRALYLGDNDFE +P E+G LKN
Sbjct:   109 INLPRGFGAFPVLEVLDLSYNNLNEQVLPGNFFGMETLRALYLGDNDFEYIPKEVGQLKN 168

Query:   121 LQII 124
             LQI+
Sbjct:   169 LQIL 172

GO:0005083 "small GTPase regulator activity" evidence=ISS

GO:0046329 "negative regulation of JNK cascade" evidence=IGI

GO:0043508 "negative regulation of JUN kinase activity" evidence=IMP

GO:0007475 "apposition of dorsal and ventral imaginal disc-derived wing surfaces" evidence=IMP

GO:0007229 "integrin-mediated signaling pathway" evidence=IGI

UNIPROTKB|E2R9R1 RSU1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 418 (152.2 bits), Expect = 2.9e-44, Sum P(2) = 2.9e-44
 Identities = 80/122 (65%), Positives = 93/122 (76%)

Query:     3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIEXXXXXXXXXXKLRILNLGMNRLSS 62
             +IT++ LSHNKL  +PP +A L NLE+L  FNNQIE          KL+ LNLGMNRL++
Sbjct:    41 HITQLVLSHNKLTTVPPNIAELKNLEVLNFFNNQIEELPTQISSLQKLKHLNLGMNRLNT 100

Query:    63 LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 122
             LPRGFG+ P LEVLDLTYNNLNE SLPGNFF L TLRALYL DNDFE+LP +IG L  LQ
Sbjct:   101 LPRGFGSLPALEVLDLTYNNLNENSLPGNFFYLTTLRALYLSDNDFEILPPDIGKLTKLQ 160

Query:   123 II 124
             I+
Sbjct:   161 IL 162

GO:0007265 "Ras protein signal transduction" evidence=IEA

UNIPROTKB|Q5E9C0 RSU1 "Ras suppressor protein 1" [Bos taurus (taxid:9913)]

 Score = 418 (152.2 bits), Expect = 2.9e-44, Sum P(2) = 2.9e-44
 Identities = 80/122 (65%), Positives = 93/122 (76%)

Query:     3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIEXXXXXXXXXXKLRILNLGMNRLSS 62
             +IT++ LSHNKL  +PP +A L NLE+L  FNNQIE          KL+ LNLGMNRL++
Sbjct:    41 HITQLVLSHNKLTTVPPNIAELKNLEVLNFFNNQIEELPTQISSLQKLKHLNLGMNRLNT 100

Query:    63 LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 122
             LPRGFG+ P LEVLDLTYNNLNE SLPGNFF L TLRALYL DNDFE+LP +IG L  LQ
Sbjct:   101 LPRGFGSLPALEVLDLTYNNLNENSLPGNFFYLTTLRALYLSDNDFEILPPDIGKLTKLQ 160

Query:   123 II 124
             I+
Sbjct:   161 IL 162

GO:0007265 "Ras protein signal transduction" evidence=IEA

UNIPROTKB|Q15404 RSU1 "Ras suppressor protein 1" [Homo sapiens (taxid:9606)]

 Score = 412 (150.1 bits), Expect = 1.2e-43, Sum P(2) = 1.2e-43
 Identities = 79/122 (64%), Positives = 93/122 (76%)

Query:     3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIEXXXXXXXXXXKLRILNLGMNRLSS 62
             +IT++ LSHNKL  +PP +A L NLE+L  FNNQIE          KL+ LNLGMNRL++
Sbjct:    41 HITQLVLSHNKLTMVPPNIAELKNLEVLNFFNNQIEELPTQISSLQKLKHLNLGMNRLNT 100

Query:    63 LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 122
             LPRGFG+ P LEVLDLTYNNL+E SLPGNFF L TLRALYL DNDFE+LP +IG L  LQ
Sbjct:   101 LPRGFGSLPALEVLDLTYNNLSENSLPGNFFYLTTLRALYLSDNDFEILPPDIGKLTKLQ 160

Query:   123 II 124
             I+
Sbjct:   161 IL 162

GO:0007265 "Ras protein signal transduction" evidence=IEA

GO:0007165 "signal transduction" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0034329 "cell junction assembly" evidence=TAS

RGD|1591781 Rsu1 "Ras suppressor protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 418 (152.2 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
 Identities = 80/124 (64%), Positives = 94/124 (75%)

Query:     1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIEXXXXXXXXXXKLRILNLGMNRL 60
             + +IT++ LSHNKL  +PP +A L NLE+L  FNNQIE          KL+ LNLGMNRL
Sbjct:    39 LAHITQLVLSHNKLTTVPPNVAELKNLEVLNFFNNQIEELPTQISSLQKLKHLNLGMNRL 98

Query:    61 SSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKN 120
             ++LPRGFG+ P LEVLDLTYNNLNE SLPGNFF L TLRALYL DNDFE+LP +IG L  
Sbjct:    99 NTLPRGFGSLPALEVLDLTYNNLNEHSLPGNFFYLTTLRALYLSDNDFEILPPDIGKLTK 158

Query:   121 LQII 124
             LQI+
Sbjct:   159 LQIL 162

GO:0007265 "Ras protein signal transduction" evidence=ISO

UNIPROTKB|E1BS02 RSU1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 408 (148.7 bits), Expect = 3.2e-43, Sum P(2) = 3.2e-43
 Identities = 78/122 (63%), Positives = 93/122 (76%)

Query:     3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIEXXXXXXXXXXKLRILNLGMNRLSS 62
             +IT++ LSHNKL  +P  +A+L N+E+L  FNNQIE          KL+ LNLGMNRL++
Sbjct:    41 HITQLVLSHNKLTTVPANIADLRNIEVLNFFNNQIEELPTQISSLQKLKHLNLGMNRLNT 100

Query:    63 LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 122
             LPRGFG+ P LEVLDLTYNNLNE SLPGNFF L TLRALYL DNDFE+LP +IG L  LQ
Sbjct:   101 LPRGFGSLPALEVLDLTYNNLNENSLPGNFFYLTTLRALYLSDNDFEILPPDIGKLTKLQ 160

Query:   123 II 124
             I+
Sbjct:   161 IL 162

GO:0007265 "Ras protein signal transduction" evidence=IEA

UNIPROTKB|E1BWI3 RSU1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 408 (148.7 bits), Expect = 3.2e-43, Sum P(2) = 3.2e-43
 Identities = 78/122 (63%), Positives = 93/122 (76%)

Query:     3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIEXXXXXXXXXXKLRILNLGMNRLSS 62
             +IT++ LSHNKL  +P  +A+L N+E+L  FNNQIE          KL+ LNLGMNRL++
Sbjct:    41 HITQLVLSHNKLTTVPANIADLRNIEVLNFFNNQIEELPTQISSLQKLKHLNLGMNRLNT 100

Query:    63 LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 122
             LPRGFG+ P LEVLDLTYNNLNE SLPGNFF L TLRALYL DNDFE+LP +IG L  LQ
Sbjct:   101 LPRGFGSLPALEVLDLTYNNLNENSLPGNFFYLTTLRALYLSDNDFEILPPDIGKLTKLQ 160

Query:   123 II 124
             I+
Sbjct:   161 IL 162

GO:0007265 "Ras protein signal transduction" evidence=IEA

MGI|MGI:103040 Rsu1 "Ras suppressor protein 1" [Mus musculus (taxid:10090)]

 Score = 404 (147.3 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
 Identities = 78/124 (62%), Positives = 94/124 (75%)

Query:     1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIEXXXXXXXXXXKLRILNLGMNRL 60
             + +IT++ LSHNKL  +PP +A L NLE+L  FNNQIE          KL+ LNLGMNRL
Sbjct:    39 LAHITQLVLSHNKLTTVPPNVAELKNLEVLNFFNNQIEELPTQISSLQKLKHLNLGMNRL 98

Query:    61 SSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKN 120
             ++LPRGFG+  +LEVL+LTYNNLNE SLPGNFF L TLRALYL DNDFE+LP +IG L  
Sbjct:    99 NTLPRGFGSSRLLEVLELTYNNLNEHSLPGNFFYLTTLRALYLSDNDFEILPPDIGKLTK 158

Query:   121 LQII 124
             LQI+
Sbjct:   159 LQIL 162

GO:0003674 "molecular_function" evidence=ND

GO:0007265 "Ras protein signal transduction" evidence=IMP

UNIPROTKB|Q09497 rsu-1 "Protein RSU-1" [Caenorhabditis elegans (taxid:6239)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 81/122 (66%), Positives = 101/122 (82%)

Query:     4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIEXXXXXXXXXXKLRILNLGMNRLSSL 63
             ITR+TLSHNKL  +PP +A+LV+L+ L L+NNQIE          KLRILN+GMN+LS L
Sbjct:    35 ITRLTLSHNKLTSVPPNIADLVSLQSLNLWNNQIEDLPPSISSLPKLRILNVGMNKLSIL 94

Query:    64 PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
             PRGFG+FP LE+LDLTYNNL+E+SLPGNFF ++TLRALYLGDNDFE+LP ++ NL NLQI
Sbjct:    95 PRGFGSFPELEILDLTYNNLSERSLPGNFFFMQTLRALYLGDNDFEMLPGDVENLTNLQI 154

Query:   124 IL 125
             ++
Sbjct:   155 LV 156

GO:0005515 "protein binding" evidence=IPI

FB|FBgn0030718 CG9172 [Drosophila melanogaster (taxid:7227)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 54/73 (73%), Positives = 56/73 (76%)

Query:   280 MLEPRWVISMGSCANXXXXXXXXXXXXXXCDRIIPVDIYVPGCPPTAEALMYGILQLQKK 339
             M EPRWVISMGSCAN              CDRIIPVDIYVPGCPPTAEALMYG+LQLQKK
Sbjct:   149 MPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQKK 208

Query:   340 VKRMKILQSWYRR 352
             VKRMK LQ WYR+
Sbjct:   209 VKRMKTLQMWYRK 221

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=ISS

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0048038 "quinone binding" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IMP

GO:0000302 "response to reactive oxygen species" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1LPW2	NUOB_RALME	1, ., 6, ., 9, 9, ., 5	0.8358	0.1903	0.4187	yes	N/A
A4G643	NUOB_HERAR	1, ., 6, ., 9, 9, ., 5	0.8208	0.1903	0.4240	yes	N/A
Q5P1E9	NUOB_AROAE	1, ., 6, ., 9, 9, ., 5	0.8358	0.1903	0.4240	yes	N/A
A9BNB3	NUOB_DELAS	1, ., 6, ., 9, 9, ., 5	0.8208	0.1903	0.4213	yes	N/A
Q0KCS9	NUOB_CUPNH	1, ., 6, ., 9, 9, ., 5	0.8358	0.1903	0.4187	yes	N/A
Q8XXQ2	NUOB_RALSO	1, ., 6, ., 9, 9, ., 5	0.8208	0.1903	0.4187	yes	N/A
B2U7R0	NUOB_RALPJ	1, ., 6, ., 9, 9, ., 5	0.8208	0.1903	0.4187	yes	N/A
A1K5A9	NUOB1_AZOSB	1, ., 6, ., 9, 9, ., 5	0.8358	0.1903	0.4240	yes	N/A
B3R3W8	NUOB_CUPTR	1, ., 6, ., 9, 9, ., 5	0.8358	0.1903	0.4187	yes	N/A
A1TLL7	NUOB_ACIAC	1, ., 6, ., 9, 9, ., 5	0.8208	0.1903	0.4213	yes	N/A
Q473U2	NUOB_CUPPJ	1, ., 6, ., 9, 9, ., 5	0.8358	0.1903	0.4187	yes	N/A
A1W4M3	NUOB_ACISJ	1, ., 6, ., 9, 9, ., 5	0.8208	0.1903	0.4213	yes	N/A
A5IHW2	NUOB_LEGPC	1, ., 6, ., 9, 9, ., 5	0.8115	0.1960	0.4367	yes	N/A
Q5E9C0	RSU1_BOVIN	No assigned EC number	0.7049	0.3295	0.4187	yes	N/A
Q15404	RSU1_HUMAN	No assigned EC number	0.6967	0.3295	0.4187	yes	N/A
Q5X1A8	NUOB_LEGPA	1, ., 6, ., 9, 9, ., 5	0.8115	0.1960	0.4367	yes	N/A
Q5WT21	NUOB_LEGPL	1, ., 6, ., 9, 9, ., 5	0.8115	0.1960	0.4367	yes	N/A
Q5ZRT9	NUOB_LEGPH	1, ., 6, ., 9, 9, ., 5	0.8115	0.1960	0.4367	yes	N/A
A6SY06	NUOB_JANMA	1, ., 6, ., 9, 9, ., 5	0.8208	0.1903	0.4240	yes	N/A
B9MEL5	NUOB_ACIET	1, ., 6, ., 9, 9, ., 5	0.8208	0.1903	0.4213	yes	N/A
Q01730	RSU1_MOUSE	No assigned EC number	0.6774	0.3352	0.4259	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.6.99.5	LOW CONFIDENCE prediction!
3rd Layer	1.1.1	LOW CONFIDENCE prediction!
3rd Layer	1.6.99	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	352
PRK06411	183	PRK06411, PRK06411, NADH dehydrogenase subunit B;	1e-45
COG0377	194	COG0377, NuoB, NADH:ubiquinone oxidoreductase 20 k	2e-42
TIGR01957	145	TIGR01957, nuoB_fam, NADH-quinone oxidoreductase,	1e-40
cd05339	243	cd05339, 17beta-HSDXI-like_SDR_c, human 17-beta-hy	2e-25
PRK14818	173	PRK14818, PRK14818, NADH dehydrogenase subunit B;	3e-25
PRK13292	788	PRK13292, PRK13292, trifunctional NADH dehydrogena	9e-25
PRK14819	264	PRK14819, PRK14819, NADH dehydrogenase subunit B;	2e-23
PRK14815	183	PRK14815, PRK14815, NADH dehydrogenase subunit B;	4e-23
PRK14813	189	PRK14813, PRK14813, NADH dehydrogenase subunit B;	1e-22
PRK14816	182	PRK14816, PRK14816, NADH dehydrogenase subunit B;	2e-22
PRK14820	180	PRK14820, PRK14820, NADH dehydrogenase subunit B;	1e-21
COG3260	148	COG3260, COG3260, Ni,Fe-hydrogenase III small subu	4e-21
PRK14817	181	PRK14817, PRK14817, NADH dehydrogenase subunit B;	1e-20
PRK14814	186	PRK14814, PRK14814, NADH dehydrogenase subunit B;	2e-20
CHL00023	225	CHL00023, ndhK, NADH dehydrogenase subunit K	8e-20
PRK07825	273	PRK07825, PRK07825, short chain dehydrogenase; Pro	2e-18
pfam01058	122	pfam01058, Oxidored_q6, NADH ubiquinone oxidoreduc	3e-18
cd05233	234	cd05233, SDR_c, classical (c) SDRs	8e-18
PRK07832	272	PRK07832, PRK07832, short chain dehydrogenase; Pro	1e-17
COG0300	265	COG0300, DltE, Short-chain dehydrogenases of vario	8e-16
cd05350	239	cd05350, SDR_c6, classical (c) SDR, subgroup 6	2e-15
cd05374	248	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxyster	3e-15
PRK06180	277	PRK06180, PRK06180, short chain dehydrogenase; Pro	2e-14
cd08939	239	cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine	9e-14
cd05332	257	cd05332, 11beta-HSD1_like_SDR_c, 11beta-hydroxyste	9e-14
PRK07666	239	PRK07666, fabG, 3-ketoacyl-(acyl-carrier-protein)	1e-13
COG4221	246	COG4221, COG4221, Short-chain alcohol dehydrogenas	1e-13
cd05346	249	cd05346, SDR_c5, classical (c) SDR, subgroup 5	6e-13
cd05343	250	cd05343, Mgc4172-like_SDR_c, human Mgc4172-like, c	2e-12
PRK07231	251	PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein)	2e-12
PRK07109	334	PRK07109, PRK07109, short chain dehydrogenase; Pro	2e-12
PRK12826	251	PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-prote	3e-12
PRK05653	246	PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein)	3e-12
cd08934	243	cd08934, CAD_SDR_c, clavulanic acid dehydrogenase	5e-12
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-12
cd05360	233	cd05360, SDR_c3, classical (c) SDR, subgroup 3	1e-11
TIGR03971	265	TIGR03971, SDR_subfam_1, oxidoreductase, SDR famil	1e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-11
PRK07024	257	PRK07024, PRK07024, short chain dehydrogenase; Pro	2e-11
COG1028	251	COG1028, FabG, Dehydrogenases with different speci	2e-11
PRK08267	260	PRK08267, PRK08267, short chain dehydrogenase; Pro	3e-11
PRK08263	275	PRK08263, PRK08263, short chain dehydrogenase; Pro	6e-11
PRK08251	248	PRK08251, PRK08251, short chain dehydrogenase; Pro	7e-11
cd09806	258	cd09806, type1_17beta-HSD-like_SDR_c, human estrog	9e-11
cd05366	257	cd05366, meso-BDH-like_SDR_c, meso-2,3-butanediol	1e-10
cd05341	247	cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta	1e-10
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-10
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-10
PRK08219	227	PRK08219, PRK08219, short chain dehydrogenase; Pro	3e-10
TIGR02415	254	TIGR02415, 23BDH, acetoin reductases	4e-10
PRK05565	247	PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein)	4e-10
PRK12829	264	PRK12829, PRK12829, short chain dehydrogenase; Pro	4e-10
cd08932	223	cd08932, HetN_like_SDR_c, HetN oxidoreductase-like	5e-10
cd08929	226	cd08929, SDR_c4, classical (c) SDR, subgroup 4	7e-10
PRK06914	280	PRK06914, PRK06914, short chain dehydrogenase; Pro	1e-09
cd08931	227	cd08931, SDR_c9, classical (c) SDR, subgroup 9	1e-09
cd05354	235	cd05354, SDR_c7, classical (c) SDR, subgroup 7	1e-09
PRK06172	253	PRK06172, PRK06172, short chain dehydrogenase; Pro	1e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-09
PRK06841	255	PRK06841, PRK06841, short chain dehydrogenase; Pro	2e-09
cd05356	239	cd05356, 17beta-HSD1_like_SDR_c, 17-beta-hydroxyst	2e-09
PRK06181	263	PRK06181, PRK06181, short chain dehydrogenase; Pro	2e-09
cd02266	186	cd02266, SDR, Short-chain dehydrogenases/reductase	3e-09
PRK05557	248	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein)	4e-09
PRK06194	287	PRK06194, PRK06194, hypothetical protein; Provisio	5e-09
PRK12828	239	PRK12828, PRK12828, short chain dehydrogenase; Pro	6e-09
cd05345	248	cd05345, BKR_3_SDR_c, putative beta-ketoacyl acyl	8e-09
PRK09291	257	PRK09291, PRK09291, short chain dehydrogenase; Pro	8e-09
cd05368	241	cd05368, DHRS6_like_SDR_c, human DHRS6-like, class	9e-09
cd09805	281	cd09805, type2_17beta_HSD-like_SDR_c, human 17beta	9e-09
cd05352	252	cd05352, MDH-like_SDR_c, mannitol dehydrogenase (M	2e-08
PRK12827	249	PRK12827, PRK12827, short chain dehydrogenase; Pro	2e-08
PRK07326	237	PRK07326, PRK07326, short chain dehydrogenase; Pro	2e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-08
PRK12825	249	PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein)	7e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-08
TIGR01830	239	TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier	8e-08
PRK07060	245	PRK07060, PRK07060, short chain dehydrogenase; Pro	9e-08
PRK08643	256	PRK08643, PRK08643, acetoin reductase; Validated	1e-07
PRK07454	241	PRK07454, PRK07454, short chain dehydrogenase; Pro	1e-07
cd08944	246	cd08944, SDR_c12, classical (c) SDR, subgroup 12	2e-07
PRK05872	296	PRK05872, PRK05872, short chain dehydrogenase; Pro	2e-07
cd05333	240	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein	2e-07
PRK05876	275	PRK05876, PRK05876, short chain dehydrogenase; Pro	2e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-07
PRK08264	238	PRK08264, PRK08264, short chain dehydrogenase; Val	3e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-07
pfam00106	167	pfam00106, adh_short, short chain dehydrogenase	3e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-07
PRK12939	250	PRK12939, PRK12939, short chain dehydrogenase; Pro	5e-07
cd05347	248	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogena	5e-07
PRK05855	582	PRK05855, PRK05855, short chain dehydrogenase; Val	6e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-07
cd08940	258	cd08940, HBDH_SDR_c, d-3-hydroxybutyrate dehydroge	8e-07
cd05323	244	cd05323, ADH_SDR_c_like, insect type alcohol dehyd	9e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-06
PRK09072	263	PRK09072, PRK09072, short chain dehydrogenase; Pro	1e-06
cd08936	256	cd08936, CR_SDR_c, Porcine peroxisomal carbonyl re	1e-06
PRK05650	270	PRK05650, PRK05650, short chain dehydrogenase; Pro	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
PRK06179	270	PRK06179, PRK06179, short chain dehydrogenase; Pro	2e-06
cd05370	228	cd05370, SDR_c2, classical (c) SDR, subgroup 2	2e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-06
PRK07069	251	PRK07069, PRK07069, short chain dehydrogenase; Val	4e-06
TIGR01963	255	TIGR01963, PHB_DH, 3-hydroxybutyrate dehydrogenase	5e-06
PRK12823	260	PRK12823, benD, 1,6-dihydroxycyclohexa-2,4-diene-1	6e-06
cd05351	244	cd05351, XR_like_SDR_c, xylulose reductase-like, c	1e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	1e-05
PRK06182	273	PRK06182, PRK06182, short chain dehydrogenase; Val	1e-05
cd05324	225	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicu	1e-05
PRK12936	245	PRK12936, PRK12936, 3-ketoacyl-(acyl-carrier-prote	2e-05
PRK06139	330	PRK06139, PRK06139, short chain dehydrogenase; Pro	2e-05
PRK06482	276	PRK06482, PRK06482, short chain dehydrogenase; Pro	3e-05
cd05365	242	cd05365, 7_alpha_HSDH_SDR_c, 7 alpha-hydroxysteroi	3e-05
COG1941	247	COG1941, FrhG, Coenzyme F420-reducing hydrogenase,	3e-05
PRK06550	235	PRK06550, fabG, 3-ketoacyl-(acyl-carrier-protein)	3e-05
cd08937	256	cd08937, DHB_DH-like_SDR_c, 1,6-dihydroxycyclohexa	3e-05
PRK06484	520	PRK06484, PRK06484, short chain dehydrogenase; Val	4e-05
PRK05693	274	PRK05693, PRK05693, short chain dehydrogenase; Pro	6e-05
PRK08226	263	PRK08226, PRK08226, short chain dehydrogenase; Pro	6e-05
cd05373	238	cd05373, SDR_c10, classical (c) SDR, subgroup 10	7e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-05
PRK08261	450	PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein)	9e-05
PRK10538	248	PRK10538, PRK10538, malonic semialdehyde reductase	9e-05
cd05326	249	cd05326, secoisolariciresinol-DH_like_SDR_c, secoi	1e-04
PRK06198	260	PRK06198, PRK06198, short chain dehydrogenase; Pro	1e-04
PRK12824	245	PRK12824, PRK12824, acetoacetyl-CoA reductase; Pro	1e-04
PRK07063	260	PRK07063, PRK07063, short chain dehydrogenase; Pro	1e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-04
cd08945	258	cd08945, PKR_SDR_c, Polyketide ketoreductase, clas	2e-04
cd05334	221	cd05334, DHPR_SDR_c_like, dihydropteridine reducta	2e-04
PRK08945	247	PRK08945, PRK08945, putative oxoacyl-(acyl carrier	2e-04
PRK08017	256	PRK08017, PRK08017, oxidoreductase; Provisional	2e-04
cd05330	257	cd05330, cyclohexanol_reductase_SDR_c, cyclohexano	2e-04
PRK07201	657	PRK07201, PRK07201, short chain dehydrogenase; Pro	3e-04
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	4e-04
cd08935	271	cd08935, mannonate_red_SDR_c, putative D-mannonate	4e-04
PRK12937	245	PRK12937, PRK12937, short chain dehydrogenase; Pro	4e-04
cd08933	261	cd08933, RDH_SDR_c, retinal dehydrogenase-like, cl	4e-04
PRK05993	277	PRK05993, PRK05993, short chain dehydrogenase; Pro	4e-04
TIGR01831	239	TIGR01831, fabG_rel, 3-oxoacyl-(acyl-carrier-prote	4e-04
PRK08085	254	PRK08085, PRK08085, gluconate 5-dehydrogenase; Pro	5e-04
PRK06077	252	PRK06077, fabG, 3-ketoacyl-(acyl-carrier-protein)	7e-04
COG3967	245	COG3967, DltE, Short-chain dehydrogenase involved	7e-04
PRK08277	278	PRK08277, PRK08277, D-mannonate oxidoreductase; Pr	9e-04
cd05325	233	cd05325, carb_red_sniffer_like_SDR_c, carbonyl red	9e-04
PRK06935	258	PRK06935, PRK06935, 2-deoxy-D-gluconate 3-dehydrog	0.001
PRK08220	252	PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehy	0.001
PLN02253	280	PLN02253, PLN02253, xanthoxin dehydrogenase	0.001
TIGR03294	228	TIGR03294, FrhG, coenzyme F420 hydrogenase, subuni	0.001
cd05329	251	cd05329, TR_SDR_c, tropinone reductase-I and II (T	0.001
cd11730	206	cd11730, Tthb094_like_SDR_c, Tthb094 and related p	0.001
cd05340	236	cd05340, Ycik_SDR_c, Escherichia coli K-12 YCIK-li	0.002
PRK06138	252	PRK06138, PRK06138, short chain dehydrogenase; Pro	0.002
cd05344	253	cd05344, BKR_like_SDR_like, putative beta-ketoacyl	0.002
TIGR04316	250	TIGR04316, dhbA_paeA, 2,3-dihydro-2,3-dihydroxyben	0.003
PRK06124	256	PRK06124, PRK06124, gluconate 5-dehydrogenase; Pro	0.003
cd05338	246	cd05338, DHRS1_HSDL2-like_SDR_c, human dehydrogena	0.004
TIGR01832	248	TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogena	0.004
cd05361	242	cd05361, haloalcohol_DH_SDR_c-like, haloalcohol de	0.004
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.004
PRK07577	234	PRK07577, PRK07577, short chain dehydrogenase; Pro	0.004

>gnl|CDD|235797 PRK06411, PRK06411, NADH dehydrogenase subunit B; Validated

 Score =  153 bits (389), Expect = 1e-45
 Identities = 49/73 (67%), Positives = 60/73 (82%)

Query: 280 MLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKK 339
           M EP+WVISMGSCAN GG YHYSYSVV+G DRI+PVD+YVPGCPP  EAL+YGIL+LQKK
Sbjct: 99  MPEPKWVISMGSCANSGGMYHYSYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILKLQKK 158

Query: 340 VKRMKILQSWYRR 352
           +++ +  +    R
Sbjct: 159 IRQSERERKRGER 171

Length = 183

>gnl|CDD|223454 COG0377, NuoB, NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases [Energy production and conversion]

 Score =  145 bits (369), Expect = 2e-42
 Identities = 44/73 (60%), Positives = 54/73 (73%)

Query: 280 MLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKK 339
           M EP+WVISMGSCAN GG Y  SYSVV+G DR++PVD+Y+PGCPP  EAL+YGIL LQ+K
Sbjct: 100 MPEPKWVISMGSCANSGGMYWNSYSVVQGVDRVVPVDVYIPGCPPRPEALLYGILLLQEK 159

Query: 340 VKRMKILQSWYRR 352
           ++R          
Sbjct: 160 IRREGRPLRDKPG 172

Length = 194

>gnl|CDD|233656 TIGR01957, nuoB_fam, NADH-quinone oxidoreductase, B subunit

 Score =  139 bits (352), Expect = 1e-40
 Identities = 44/63 (69%), Positives = 56/63 (88%)

Query: 280 MLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKK 339
           M EP+WVISMG+CAN GG +H SYSVV+G DRI+PVD+Y+PGCPP  EAL+YG+++LQKK
Sbjct: 82  MPEPKWVISMGACANSGGMFHTSYSVVQGVDRIVPVDVYIPGCPPRPEALIYGLIKLQKK 141

Query: 340 VKR 342
           +KR
Sbjct: 142 IKR 144

This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2 [Energy metabolism, Electron transport]. Length = 145

>gnl|CDD|187598 cd05339, 17beta-HSDXI-like_SDR_c, human 17-beta-hydroxysteroid dehydrogenase XI-like, classical (c) SDRs

 Score =  102 bits (256), Expect = 2e-25
 Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 10/102 (9%)

Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNS 183
             + FLPDM+E+N GHIV I+S+AG++    L  YCASK A  G  E+L  EL+   +  
Sbjct: 114 TTKAFLPDMLERNHGHIVTIASVAGLISPAGLADYCASKAAAVGFHESLRLELKAYGKPG 173

Query: 184 KIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEA 225
            IK T + P+ ++TG+ +  K     L          P+LE 
Sbjct: 174 -IKTTLVCPYFINTGMFQGVKTPRPLL---------APILEP 205

17-beta-hydroxysteroid dehydrogenases (17betaHSD) are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. 17betaHSD type XI, a classical SDR, preferentially converts 3alpha-adiol to androsterone but not numerous other tested steroids. This subgroup of classical SDRs also includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 243

>gnl|CDD|173279 PRK14818, PRK14818, NADH dehydrogenase subunit B; Provisional

 Score = 99.6 bits (248), Expect = 3e-25
 Identities = 37/62 (59%), Positives = 49/62 (79%)

Query: 280 MLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKK 339
           M EP++VISMGSC+N GG +   YSV +G D++IPVD+YVPGCPP  EAL  G+L+LQ+ 
Sbjct: 95  MPEPKYVISMGSCSNCGGLFQLGYSVCKGVDKVIPVDVYVPGCPPRPEALTEGLLRLQEI 154

Query: 340 VK 341
           V+
Sbjct: 155 VR 156

Length = 173

>gnl|CDD|183955 PRK13292, PRK13292, trifunctional NADH dehydrogenase I subunit B/C/D; Provisional

 Score =  105 bits (263), Expect = 9e-25
 Identities = 38/63 (60%), Positives = 51/63 (80%), Gaps = 1/63 (1%)

Query: 280 MLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKK 339
           M EP+WVISMGSCAN GG Y   YSVV+G ++I+PVD+Y+PGCPP  EA + G++ LQ+K
Sbjct: 87  MAEPKWVISMGSCANSGGMYDV-YSVVQGVNQILPVDVYIPGCPPRPEAFLQGLMLLQEK 145

Query: 340 VKR 342
           ++R
Sbjct: 146 IRR 148

Length = 788

>gnl|CDD|237822 PRK14819, PRK14819, NADH dehydrogenase subunit B; Provisional

 Score = 97.7 bits (243), Expect = 2e-23
 Identities = 36/73 (49%), Positives = 52/73 (71%), Gaps = 1/73 (1%)

Query: 280 MLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKK 339
           M EPR+VISMG+CA  GG +   Y+V+RG D +IPVD+Y+PGCPP  EAL++ ++ LQK+
Sbjct: 96  MPEPRYVISMGACATSGGPFRDGYNVLRGIDLLIPVDVYIPGCPPRPEALLHALMTLQKQ 155

Query: 340 VKRMKILQS-WYR 351
           +    + +  WY 
Sbjct: 156 IDAQSLGRVRWYG 168

Length = 264

>gnl|CDD|237821 PRK14815, PRK14815, NADH dehydrogenase subunit B; Provisional

 Score = 94.2 bits (234), Expect = 4e-23
 Identities = 35/73 (47%), Positives = 56/73 (76%), Gaps = 1/73 (1%)

Query: 280 MLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKK 339
           M EP+WVI+MG+CA+ GG Y  SYSV++G DRI+PVD+Y+ GCPP  EA++  +++LQKK
Sbjct: 98  MPEPKWVIAMGACASSGGMYR-SYSVLQGVDRILPVDVYISGCPPRPEAILDALIKLQKK 156

Query: 340 VKRMKILQSWYRR 352
           +   +  ++ +++
Sbjct: 157 IDTERAARTLFKK 169

Length = 183

>gnl|CDD|173274 PRK14813, PRK14813, NADH dehydrogenase subunit B; Provisional

 Score = 93.4 bits (232), Expect = 1e-22
 Identities = 37/67 (55%), Positives = 54/67 (80%), Gaps = 1/67 (1%)

Query: 280 MLEPRWVISMGSCANGGG-YYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQK 338
           M EPR+V+SMGSC+N GG Y+ + Y V++G DRIIPVD+YVPGCPP  EAL+ G++++Q+
Sbjct: 92  MPEPRYVLSMGSCSNCGGPYWEHGYHVLKGVDRIIPVDVYVPGCPPRPEALIGGLMKVQE 151

Query: 339 KVKRMKI 345
            ++  +I
Sbjct: 152 LIRMEQI 158

Length = 189

>gnl|CDD|173277 PRK14816, PRK14816, NADH dehydrogenase subunit B; Provisional

 Score = 92.3 bits (229), Expect = 2e-22
 Identities = 34/62 (54%), Positives = 48/62 (77%)

Query: 280 MLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKK 339
           M +P++VI++G CA  GG +  SY V+ G D+I+PVD+Y+PGCPP  EA  YG++QLQ+K
Sbjct: 106 MADPKYVIAVGGCAVSGGPFKKSYHVLNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRK 165

Query: 340 VK 341
           VK
Sbjct: 166 VK 167

Length = 182

>gnl|CDD|184833 PRK14820, PRK14820, NADH dehydrogenase subunit B; Provisional

 Score = 90.3 bits (224), Expect = 1e-21
 Identities = 34/62 (54%), Positives = 51/62 (82%), Gaps = 1/62 (1%)

Query: 280 MLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKK 339
           M EPRWV+++G+CA+ GG +  +YSV++G DRIIPVD+YVPGCPP  E ++ G++++Q+ 
Sbjct: 98  MAEPRWVVAVGACASSGGIFD-TYSVLQGIDRIIPVDVYVPGCPPRPEQIIDGVMRVQEL 156

Query: 340 VK 341
           VK
Sbjct: 157 VK 158

Length = 180

>gnl|CDD|225799 COG3260, COG3260, Ni,Fe-hydrogenase III small subunit [Energy production and conversion]

 Score = 87.8 bits (218), Expect = 4e-21
 Identities = 29/71 (40%), Positives = 46/71 (64%)

Query: 274 LKNLQIMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGI 333
            K  + M EP+ VI++G+CA  GG +  SYSV    D++IPVD+ +PGCPP  EA++ G+
Sbjct: 68  KKAYEAMPEPKIVIAVGACALSGGIFKDSYSVWGPVDKVIPVDVEIPGCPPRPEAILAGL 127

Query: 334 LQLQKKVKRMK 344
           +    K+++  
Sbjct: 128 VAALGKLEKKI 138

Length = 148

>gnl|CDD|173278 PRK14817, PRK14817, NADH dehydrogenase subunit B; Provisional

 Score = 87.3 bits (216), Expect = 1e-20
 Identities = 34/62 (54%), Positives = 49/62 (79%), Gaps = 1/62 (1%)

Query: 280 MLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKK 339
           M +P+WV++ G CA+ GG+Y  +Y+ V+G DRIIPVD+YVPGCPP  E ++ GI+ LQKK
Sbjct: 100 MADPKWVMAFGVCASSGGFYD-NYATVQGIDRIIPVDVYVPGCPPRPEQVLDGIMLLQKK 158

Query: 340 VK 341
           ++
Sbjct: 159 IQ 160

Length = 181

>gnl|CDD|173275 PRK14814, PRK14814, NADH dehydrogenase subunit B; Provisional

 Score = 87.0 bits (215), Expect = 2e-20
 Identities = 34/62 (54%), Positives = 51/62 (82%), Gaps = 1/62 (1%)

Query: 280 MLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKK 339
           M EP++VIS+G+CA+ GG +H +Y V++G DRI+PVD+YVPGCPP  EA++  +++LQ K
Sbjct: 98  MAEPKFVISVGACASSGGMFH-TYGVLQGVDRILPVDVYVPGCPPRPEAILDALVKLQTK 156

Query: 340 VK 341
           +K
Sbjct: 157 LK 158

Length = 186

>gnl|CDD|214337 CHL00023, ndhK, NADH dehydrogenase subunit K

 Score = 86.3 bits (214), Expect = 8e-20
 Identities = 34/64 (53%), Positives = 48/64 (75%), Gaps = 1/64 (1%)

Query: 280 MLEPRWVISMGSCANGGGYYHY-SYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQK 338
           M EP++VI+MG+C   GG +   SYS VRG D++IPVD+Y+PGCPP  EA++  I +L+K
Sbjct: 96  MPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRK 155

Query: 339 KVKR 342
           K+ R
Sbjct: 156 KISR 159

Length = 225

>gnl|CDD|181136 PRK07825, PRK07825, short chain dehydrogenase; Provisional

 Score = 83.5 bits (207), Expect = 2e-18
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 4/71 (5%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
            P M+ + RGH+V ++S+AG + +P +  YCASK AV G  +A   EL    R + +  +
Sbjct: 121 APRMVPRGRGHVVNVASLAGKIPVPGMATYCASKHAVVGFTDAARLEL----RGTGVHVS 176

Query: 189 SIFPFMVDTGL 199
            + P  V+T L
Sbjct: 177 VVLPSFVNTEL 187

Length = 273

>gnl|CDD|216271 pfam01058, Oxidored_q6, NADH ubiquinone oxidoreductase, 20 Kd subunit

 Score = 79.1 bits (196), Expect = 3e-18
 Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 4/64 (6%)

Query: 277 LQIMLEPRWVISMGSCANGGG---YYHYSYSV-VRGCDRIIPVDIYVPGCPPTAEALMYG 332
            ++  + + VI++G+CA  GG     + SY V V     ++PVDI +PGCPP  EA++  
Sbjct: 59  YELAPKAKAVIAVGTCAAYGGIPAAGNNSYGVGVGPVLEVVPVDINIPGCPPHPEAILGT 118

Query: 333 ILQL 336
           +L L
Sbjct: 119 LLAL 122

Length = 122

>gnl|CDD|212491 cd05233, SDR_c, classical (c) SDRs

 Score = 81.2 bits (201), Expect = 8e-18
 Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
            LP M ++  G IV ISS+AG+  LP    Y ASK A+ GL  +LA EL        I+ 
Sbjct: 116 ALPHMKKQGGGRIVNISSVAGLRPLPGQAAYAASKAALEGLTRSLALELAPY----GIRV 171

Query: 188 TSIFPFMVDTGL 199
            ++ P +VDT +
Sbjct: 172 NAVAPGLVDTPM 183

SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 234

>gnl|CDD|181139 PRK07832, PRK07832, short chain dehydrogenase; Provisional

 Score = 81.2 bits (201), Expect = 1e-17
 Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 5/84 (5%)

Query: 124 ILETFLPDMMEKNRG-HIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARN 182
           ++ETF+P M+   RG H+V +SS AG+V LP    Y ASKF +RG    L+E LR D   
Sbjct: 116 VIETFVPPMVAAGRGGHLVNVSSAAGLVALPWHAAYSASKFGLRG----LSEVLRFDLAR 171

Query: 183 SKIKFTSIFPFMVDTGLCKNPKIK 206
             I  + + P  V T L    +I 
Sbjct: 172 HGIGVSVVVPGAVKTPLVNTVEIA 195

Length = 272

>gnl|CDD|223377 COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]

 Score = 75.7 bits (187), Expect = 8e-16
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
            LP M+E+  GHI+ I S AG++  P +  Y A+K  V    EAL EEL    + + +K 
Sbjct: 126 VLPGMVERGAGHIINIGSAAGLIPTPYMAVYSATKAFVLSFSEALREEL----KGTGVKV 181

Query: 188 TSIFPFMVDTGLCKNPKIKMNRLS 211
           T++ P    T         +  LS
Sbjct: 182 TAVCPGPTRTEFFDAKGSDVYLLS 205

Length = 265

>gnl|CDD|187608 cd05350, SDR_c6, classical (c) SDR, subgroup 6

 Score = 74.3 bits (183), Expect = 2e-15
 Identities = 35/79 (44%), Positives = 43/79 (54%), Gaps = 4/79 (5%)

Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNS 183
           ILE  LP    K RGH+V ISS+A + GLP    Y ASK A+  L E+    LR D +  
Sbjct: 113 ILEAALPQFRAKGRGHLVLISSVAALRGLPGAAAYSASKAALSSLAES----LRYDVKKR 168

Query: 184 KIKFTSIFPFMVDTGLCKN 202
            I+ T I P  +DT L  N
Sbjct: 169 GIRVTVINPGFIDTPLTAN 187

These proteins are members of the classical SDR family, with a canonical active site tetrad and a fairly well conserved typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 239

>gnl|CDD|187632 cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs

 Score = 74.2 bits (183), Expect = 3e-15
 Identities = 35/82 (42%), Positives = 42/82 (51%), Gaps = 4/82 (4%)

Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
           FLP M ++  G IV +SS+AG+V  P L PYCASK A+  L E+L  EL        IK 
Sbjct: 116 FLPLMRKQGSGRIVNVSSVAGLVPTPFLGPYCASKAALEALSESLRLELAP----FGIKV 171

Query: 188 TSIFPFMVDTGLCKNPKIKMNR 209
           T I P  V TG   N       
Sbjct: 172 TIIEPGPVRTGFADNAAGSALE 193

17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248

>gnl|CDD|180446 PRK06180, PRK06180, short chain dehydrogenase; Provisional

 Score = 72.3 bits (178), Expect = 2e-14
 Identities = 24/50 (48%), Positives = 35/50 (70%)

Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELR 177
            LP M  + RGHIV I+SM G++ +P +  YC SKFA+ G+ E+LA+E+ 
Sbjct: 120 VLPGMRARRRGHIVNITSMGGLITMPGIGYYCGSKFALEGISESLAKEVA 169

Length = 277

>gnl|CDD|187643 cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR

 Score = 69.6 bits (171), Expect = 9e-14
 Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
           LP M E+  GHIV +SS A +VG+     YC SKFA+RGL E+L +EL+       I+ +
Sbjct: 125 LPLMKEQRPGHIVFVSSQAALVGIYGYSAYCPSKFALRGLAESLRQELKP----YNIRVS 180

Query: 189 SIFPFMVDT 197
            ++P   DT
Sbjct: 181 VVYPPDTDT 189

These proteins include members identified as KDSR, ribitol type dehydrogenase, and others. The group shows strong conservation of the active site tetrad and glycine rich NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 239

>gnl|CDD|187593 cd05332, 11beta-HSD1_like_SDR_c, 11beta-hydroxysteroid dehydrogenase type 1 (11beta-HSD1)-like, classical (c) SDRs

 Score = 69.9 bits (172), Expect = 9e-14
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 4/74 (5%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
           LP ++E+++G IV +SS+AG +G+P    Y ASK A++G  ++L  EL E      I  T
Sbjct: 124 LPHLIERSQGSIVVVSSIAGKIGVPFRTAYAASKHALQGFFDSLRAELSE----PNISVT 179

Query: 189 SIFPFMVDTGLCKN 202
            + P ++DT +  N
Sbjct: 180 VVCPGLIDTNIAMN 193

Human 11beta_HSD1 catalyzes the NADP(H)-dependent interconversion of cortisone and cortisol. This subgroup also includes human dehydrogenase/reductase SDR family member 7C (DHRS7C) and DHRS7B. These proteins have the GxxxGxG nucleotide binding motif and S-Y-K catalytic triad characteristic of the SDRs, but have an atypical C-terminal domain that contributes to homodimerization contacts. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257

>gnl|CDD|236074 PRK07666, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 69.3 bits (170), Expect = 1e-13
 Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 4/78 (5%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
           LP M+E+  G I+ ISS AG  G      Y ASKF V GL E+L +E+R+      I+ T
Sbjct: 127 LPSMIERQSGDIINISSTAGQKGAAVTSAYSASKFGVLGLTESLMQEVRK----HNIRVT 182

Query: 189 SIFPFMVDTGLCKNPKIK 206
           ++ P  V T +  +  + 
Sbjct: 183 ALTPSTVATDMAVDLGLT 200

Length = 239

>gnl|CDD|226674 COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

 Score = 69.2 bits (170), Expect = 1e-13
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
           LP M+E+  GHI+ + S+AG    P    Y A+K AVR         LR++   + I+ T
Sbjct: 124 LPGMVERKSGHIINLGSIAGRYPYPGGAVYGATKAAVRAFSLG----LRQELAGTGIRVT 179

Query: 189 SIFPFMVDT 197
            I P +V+T
Sbjct: 180 VISPGLVET 188

Length = 246

>gnl|CDD|187604 cd05346, SDR_c5, classical (c) SDR, subgroup 5

 Score = 67.3 bits (165), Expect = 6e-13
 Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 4/81 (4%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           N+K L  +    LP M+ +N+GHI+ + S+AG         YCA+K AVR      +  L
Sbjct: 110 NVKGLLNVTRLILPIMIARNQGHIINLGSIAGRYPYAGGNVYCATKAAVR----QFSLNL 165

Query: 177 REDARNSKIKFTSIFPFMVDT 197
           R+D   + I+ T+I P +V+T
Sbjct: 166 RKDLIGTGIRVTNIEPGLVET 186

These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 249

>gnl|CDD|187601 cd05343, Mgc4172-like_SDR_c, human Mgc4172-like, classical (c) SDRs

 Score = 66.0 bits (161), Expect = 2e-12
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 11/107 (10%)

Query: 117 NLKNLQIILETFLPDMMEKN--RGHIVGISSMAG--IVGLPNLVPYCASKFAVRGLMEAL 172
           N+  L I        M E+N   GHI+ I+SM+G  +  +     Y A+K AV  L E L
Sbjct: 115 NVLALSICTREAYQSMKERNVDDGHIININSMSGHRVPPVSVFHFYAATKHAVTALTEGL 174

Query: 173 AEELREDARNSKIKFTSIFPFMVDTGLC-----KNPKIKMNRLSSLP 214
            +ELRE    + I+ TSI P +V+T         +P+       S+P
Sbjct: 175 RQELRE--AKTHIRATSISPGLVETEFAFKLHDNDPEKAAATYESIP 219

Human Mgc4172-like proteins, putative SDRs. These proteins are members of the SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250

>gnl|CDD|235975 PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 66.0 bits (162), Expect = 2e-12
 Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 4/73 (5%)

Query: 127 TFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIK 186
             +P M  +  G IV ++S AG+   P L  Y ASK AV  L +ALA EL  D    KI+
Sbjct: 123 AAVPAMRGEGGGAIVNVASTAGLRPRPGLGWYNASKGAVITLTKALAAELGPD----KIR 178

Query: 187 FTSIFPFMVDTGL 199
             ++ P +V+TGL
Sbjct: 179 VNAVAPVVVETGL 191

Length = 251

>gnl|CDD|235935 PRK07109, PRK07109, short chain dehydrogenase; Provisional

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
           L  M  ++RG I+ + S      +P    YCA+K A+RG  ++L  EL  D   S +  T
Sbjct: 128 LRHMRPRDRGAIIQVGSALAYRSIPLQSAYCAAKHAIRGFTDSLRCELLHD--GSPVSVT 185

Query: 189 SIFPFMVDT 197
            + P  V+T
Sbjct: 186 MVQPPAVNT 194

Length = 334

>gnl|CDD|183775 PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

 Score = 65.7 bits (161), Expect = 3e-12
 Identities = 31/82 (37%), Positives = 39/82 (47%), Gaps = 5/82 (6%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAG-IVGLPNLVPYCASKFAVRGLMEALAEE 175
           NL    ++ +  LP ++    G IV  SS+AG  VG P L  Y ASK  + G   ALA E
Sbjct: 114 NLTGTFLLTQAALPALIRAGGGRIVLTSSVAGPRVGYPGLAHYAASKAGLVGFTRALALE 173

Query: 176 LREDARNSKIKFTSIFPFMVDT 197
           L        I   S+ P  VDT
Sbjct: 174 LAAR----NITVNSVHPGGVDT 191

Length = 251

>gnl|CDD|235546 PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

 Score = 65.2 bits (160), Expect = 3e-12
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
           LP M++   G IV ISS++G+ G P    Y A+K  V G  +ALA EL        I   
Sbjct: 125 LPPMIKARYGRIVNISSVSGVTGNPGQTNYSAAKAGVIGFTKALALELASR----GITVN 180

Query: 189 SIFPFMVDTG 198
           ++ P  +DT 
Sbjct: 181 AVAPGFIDTD 190

Length = 246

>gnl|CDD|187639 cd08934, CAD_SDR_c, clavulanic acid dehydrogenase (CAD), classical (c) SDR

 Score = 64.9 bits (158), Expect = 5e-12
 Identities = 31/83 (37%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           NL  L       LP  + +N+G IV ISS+AG V + N   Y A+KF V    E L +E+
Sbjct: 111 NLLGLMYTTHAALPHHLLRNKGTIVNISSVAGRVAVRNSAVYNATKFGVNAFSEGLRQEV 170

Query: 177 REDARNSKIKFTSIFPFMVDTGL 199
            E      ++   I P  VDT L
Sbjct: 171 TER----GVRVVVIEPGTVDTEL 189

CAD catalyzes the NADP-dependent reduction of clavulanate-9-aldehyde to clavulanic acid, a beta-lactamase inhibitor. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 243

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 66.1 bits (161), Expect = 5e-12
 Identities = 46/121 (38%), Positives = 65/121 (53%), Gaps = 2/121 (1%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
           +  + LS NK++ +P  L NL NL+ L L  N +  LP  LS+L  L  L+L  N++S L
Sbjct: 142 LKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDL 201

Query: 64  PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
           P        LE LDL+ N++    L  +   L+ L  L L +N  E LP  IGNL NL+ 
Sbjct: 202 PPEIELLSALEELDLSNNSI--IELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLET 259

Query: 124 I 124
           +
Sbjct: 260 L 260

Length = 394

>gnl|CDD|187618 cd05360, SDR_c3, classical (c) SDR, subgroup 3

 Score = 63.6 bits (155), Expect = 1e-11
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 8/89 (8%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
           LP +  +  G ++ + S+ G    P    Y ASK AVRG  E+L  EL  D     I  T
Sbjct: 120 LPHLRRRGGGALINVGSLLGYRSAPLQAAYSASKHAVRGFTESLRAELAHDGAP--ISVT 177

Query: 189 SIFPFMVDT---GLCKNPKIKMNRLSSLP 214
            + P  ++T   G  ++    M +    P
Sbjct: 178 LVQPTAMNTPFFGHARS---YMGKKPKPP 203

These proteins are members of the classical SDR family, with a canonical active site triad (and also active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 233

>gnl|CDD|234422 TIGR03971, SDR_subfam_1, oxidoreductase, SDR family

 Score = 63.7 bits (155), Expect = 1e-11
 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 5/87 (5%)

Query: 117 NLKNLQIILETFLPDMME-KNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEE 175
           NL  +    +  +P M+E  N G I+  SS+AG+  LP L  Y A+K  + GL + LA E
Sbjct: 124 NLTGVWRTCKAVVPHMIERGNGGSIIITSSVAGLKALPGLAHYAAAKHGLVGLTKTLANE 183

Query: 176 LREDARNSKIKFTSIFPFMVDTGLCKN 202
           L E      I+  SI P+ VDT +   
Sbjct: 184 LAE----YGIRVNSIHPYSVDTPMIAP 206

Members of this protein subfamily are putative oxidoreductases belonging to the larger SDR family. Members of the present subfamily may occur several to a genome and are largely restricted to genomes that contain members of families TIGR03962, TIGR03967, and TIGR03969. Many members have been annotated by homology as carveol dehydrogenases. Length = 265

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 79/297 (26%), Positives = 128/297 (43%), Gaps = 42/297 (14%)

Query: 9   LSHNKLK-EIPPGLANLVNLEILTLFNNQIE-TLPTSLSSLPKLRILNLGMNRLS-SLPR 65
           LS N L  EIP  +  L NLEIL LF+N     +P +L+SLP+L++L L  N+ S  +P+
Sbjct: 291 LSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK 350

Query: 66  GFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQII 124
             G    L VLDL+ NNL  + +P        L  L L  N  E  +P  +G  ++L+ +
Sbjct: 351 NLGKHNNLTVLDLSTNNLTGE-IPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRV 409

Query: 125 LETFLPDMMEKNRGHIVG-ISSMAGIVGLPNLVPYCASKFAVR---GLMEALAEELREDA 180
                   ++ N     G + S    + L   +    +    R      +  + ++   A
Sbjct: 410 -------RLQDN--SFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA 460

Query: 181 RNSKIKFTSIFPFMVDTGLCKNPKIKMNRLS-SLPRGFGAFPVLEAFSFT---------- 229
           RN   KF    P    +   +N  +  N+ S ++PR  G+   L     +          
Sbjct: 461 RN---KFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD 517

Query: 230 --------TILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNL 277
                     LDL++N L+ Q +P +F  +  L  L L  N     +P  +GN+++L
Sbjct: 518 ELSSCKKLVSLDLSHNQLSGQ-IPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESL 573

Length = 968

>gnl|CDD|235910 PRK07024, PRK07024, short chain dehydrogenase; Provisional

 Score = 63.4 bits (155), Expect = 2e-11
 Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 15/99 (15%)

Query: 110 VLPAEIGNLKNLQIILET-----------FLPDMMEKNRGHIVGISSMAGIVGLPNLVPY 158
            L  E  +L   + +++T           F+  M    RG +VGI+S+AG+ GLP    Y
Sbjct: 92  TLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRGTLVGIASVAGVRGLPGAGAY 151

Query: 159 CASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT 197
            ASK A    +E+L  EL    R + ++  +I P  + T
Sbjct: 152 SASKAAAIKYLESLRVEL----RPAGVRVVTIAPGYIRT 186

Length = 257

>gnl|CDD|223959 COG1028, FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 62.9 bits (153), Expect = 2e-11
 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 7/83 (8%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           NL    ++    LP M +     IV ISS+AG+ G P    Y ASK A+ GL +ALA EL
Sbjct: 118 NLLGAFLLTRAALPLMKK---QRIVNISSVAGLGGPPGQAAYAASKAALIGLTKALALEL 174

Query: 177 REDARNSKIKFTSIFPFMVDTGL 199
                   I+  ++ P  +DT +
Sbjct: 175 APR----GIRVNAVAPGYIDTPM 193

Length = 251

>gnl|CDD|236210 PRK08267, PRK08267, short chain dehydrogenase; Provisional

 Score = 62.6 bits (153), Expect = 3e-11
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 138 GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT 197
             ++  SS + I G P L  Y A+KFAVRGL EAL  E R       I+   + P  VDT
Sbjct: 129 ARVINTSSASAIYGQPGLAVYSATKFAVRGLTEALDLEWRRH----GIRVADVMPLFVDT 184

Query: 198 GLCKNPKIKM 207
            +      ++
Sbjct: 185 AMLDGTSNEV 194

Length = 260

>gnl|CDD|181334 PRK08263, PRK08263, short chain dehydrogenase; Provisional

 Score = 62.0 bits (151), Expect = 6e-11
 Identities = 23/47 (48%), Positives = 31/47 (65%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEE 175
           LP + E+  GHI+ ISS+ GI   P    Y ASK+A+ G+ EALA+E
Sbjct: 120 LPYLREQRSGHIIQISSIGGISAFPMSGIYHASKWALEGMSEALAQE 166

Length = 275

>gnl|CDD|181324 PRK08251, PRK08251, short chain dehydrogenase; Provisional

 Score = 61.5 bits (150), Expect = 7e-11
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 20/80 (25%)

Query: 134 EKNRGHIVGISSMAGIVGLP-NLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFP 192
           E+  GH+V ISS++ + GLP     Y ASK  V     +L E LR +   + IK ++I P
Sbjct: 129 EQGSGHLVLISSVSAVRGLPGVKAAYAASKAGVA----SLGEGLRAELAKTPIKVSTIEP 184

Query: 193 ---------------FMVDT 197
                          FMVDT
Sbjct: 185 GYIRSEMNAKAKSTPFMVDT 204

Length = 248

>gnl|CDD|187666 cd09806, type1_17beta-HSD-like_SDR_c, human estrogenic 17beta-hydroxysteroid dehydrogenase type 1 (type 1 17beta-HSD)-like, classical (c) SDRs

 Score = 61.3 bits (149), Expect = 9e-11
 Identities = 27/54 (50%), Positives = 36/54 (66%)

Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELR 177
           +L+ FLPDM  +  G I+  SS+ G+ GLP    YCASKFA+ GL E+LA +L 
Sbjct: 117 MLQAFLPDMKRRGSGRILVTSSVGGLQGLPFNDVYCASKFALEGLCESLAVQLL 170

17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical SDR subgroup includes human type 1 17beta-HSD, human retinol dehydrogenase 8, zebrafish photoreceptor associated retinol dehydrogenase type 2, and a chicken ovary-specific 17beta-hydroxysteroid dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 258

>gnl|CDD|187624 cd05366, meso-BDH-like_SDR_c, meso-2,3-butanediol dehydrogenase-like, classical (c) SDRs

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 23/43 (53%), Positives = 29/43 (67%)

Query: 134 EKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
             + G I+  SS+AG+ G PNL  Y ASKFAVRGL +  A+EL
Sbjct: 129 LGHGGKIINASSIAGVQGFPNLGAYSASKFAVRGLTQTAAQEL 171

2,3-butanediol dehydrogenases (BDHs) catalyze the NAD+ dependent conversion of 2,3-butanediol to acetonin; BDHs are classified into types according to their stereospecificity as to substrates and products. Included in this subgroup are Klebsiella pneumonia meso-BDH which catalyzes meso-2,3-butanediol to D(-)-acetonin, and Corynebacterium glutamicum L-BDH which catalyzes lX+)-2,3-butanediol to L(+)-acetonin. This subgroup is comprised of classical SDRs with the characteristic catalytic triad and NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257

>gnl|CDD|187600 cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs

 Score = 60.5 bits (147), Expect = 1e-10
 Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           NL  + +     +P M E   G I+ +SS+ G+VG P L  Y ASK AVRGL ++ A E 
Sbjct: 110 NLTGVFLGTRAVIPPMKEAGGGSIINMSSIEGLVGDPALAAYNASKGAVRGLTKSAALEC 169

Query: 177 REDARNSKIKFTSIFPFMVDT 197
               +   I+  S+ P  + T
Sbjct: 170 AT--QGYGIRVNSVHPGYIYT 188

This subgroup includes members identified as 3beta17beta hydroxysteroid dehydrogenase, 20beta hydroxysteroid dehydrogenase, and R-alcohol dehydrogenase. These proteins exhibit the canonical active site tetrad and glycine rich NAD(P)-binding motif of the classical SDRs. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 247

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 61.1 bits (148), Expect = 2e-10
 Identities = 45/122 (36%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 3   YITRITLSHNKLKEIPPGLANLV-NLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLS 61
            +T + L +N + +IPP +  L  NL+ L L +N+IE+LP+ L +LP L+ L+L  N LS
Sbjct: 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176

Query: 62  SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL 121
            LP+       L  LDL+ N +    LP    +L  L  L L +N    L + + NLKNL
Sbjct: 177 DLPKLLSNLSNLNNLDLSGNKI--SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNL 234

Query: 122 QI 123
             
Sbjct: 235 SG 236

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 60.8 bits (147), Expect = 3e-10
 Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 3/123 (2%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLP-KLRILNLGMNRLSS 62
           +  + L+ N+L+     L  L NL  L L NN I  +P  +  L   L+ L+L  N++ S
Sbjct: 95  LPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES 154

Query: 63  LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 122
           LP      P L+ LDL++N+L++  LP     L  L  L L  N    LP EI  L  L+
Sbjct: 155 LPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALE 212

Query: 123 IIL 125
            + 
Sbjct: 213 ELD 215

Length = 394

>gnl|CDD|181298 PRK08219, PRK08219, short chain dehydrogenase; Provisional

 Score = 59.2 bits (144), Expect = 3e-10
 Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 5/64 (7%)

Query: 136 NRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV 195
             GH+V I+S AG+   P    Y ASKFA+R    ALA+ LRE+     ++ TS+ P   
Sbjct: 120 AHGHVVFINSGAGLRANPGWGSYAASKFALR----ALADALREEEPG-NVRVTSVHPGRT 174

Query: 196 DTGL 199
           DT +
Sbjct: 175 DTDM 178

Length = 227

>gnl|CDD|131468 TIGR02415, 23BDH, acetoin reductases

 Score = 59.4 bits (144), Expect = 4e-10
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 4/85 (4%)

Query: 134 EKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPF 193
           + + G I+  +S+AG  G P L  Y ++KFAVRGL +  A+EL        I   +  P 
Sbjct: 126 QGHGGKIINAASIAGHEGNPILSAYSSTKFAVRGLTQTAAQELAPKG----ITVNAYCPG 181

Query: 194 MVDTGLCKNPKIKMNRLSSLPRGFG 218
           +V T + +    + + ++  P G G
Sbjct: 182 IVKTPMWEEIDEETSEIAGKPIGEG 206

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PMID:11577733) [Energy metabolism, Fermentation]. Length = 254

>gnl|CDD|235506 PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 59.1 bits (144), Expect = 4e-10
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
           LP M+++  G IV ISS+ G++G    V Y ASK AV    +ALA+EL      S I+  
Sbjct: 126 LPYMIKRKSGVIVNISSIWGLIGASCEVLYSASKGAVNAFTKALAKEL----APSGIRVN 181

Query: 189 SIFPFMVDT 197
           ++ P  +DT
Sbjct: 182 AVAPGAIDT 190

Length = 247

>gnl|CDD|183778 PRK12829, PRK12829, short chain dehydrogenase; Provisional

 Score = 59.3 bits (144), Expect = 4e-10
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 7/91 (7%)

Query: 129 LPDMMEKNRG-HIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
           +P +     G  I+ +SS+AG +G P   PY ASK+AV GL+++LA EL        I+ 
Sbjct: 130 VPLLKASGHGGVIIALSSVAGRLGYPGRTPYAASKWAVVGLVKSLAIELGP----LGIRV 185

Query: 188 TSIFPFMVDTGLCKNPKIKMNRLSSLPRGFG 218
            +I P +V     +  ++   R   L  G  
Sbjct: 186 NAILPGIVRGP--RMRRVIEARAQQLGIGLD 214

Length = 264

>gnl|CDD|212493 cd08932, HetN_like_SDR_c, HetN oxidoreductase-like, classical (c) SDR

 Score = 58.5 bits (142), Expect = 5e-10
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
           LP + E   G +V ++S++G   L     Y ASKFA+R L  AL +E  +      ++ +
Sbjct: 116 LPALREAGSGRVVFLNSLSGKRVLAGNAGYSASKFALRALAHALRQEGWDHG----VRVS 171

Query: 189 SIFPFMVDT 197
           ++ P  VDT
Sbjct: 172 AVCPGFVDT 180

This subgroup includes Anabaena sp. strain PCC 7120 HetN, a putative oxidoreductase involved in heterocyst differentiation, and related proteins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 223

>gnl|CDD|187634 cd08929, SDR_c4, classical (c) SDR, subgroup 4

 Score = 58.3 bits (141), Expect = 7e-10
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
            P ++ +  G IV + S+AG         Y ASKF + GL EA   +LRE      I+  
Sbjct: 117 APALLRRGGGTIVNVGSLAGKNAFKGGAAYNASKFGLLGLSEAAMLDLREA----NIRVV 172

Query: 189 SIFPFMVDTGLCKNP 203
           ++ P  VDTG   +P
Sbjct: 173 NVMPGSVDTGFAGSP 187

This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 226

>gnl|CDD|180744 PRK06914, PRK06914, short chain dehydrogenase; Provisional

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 23/54 (42%), Positives = 35/54 (64%)

Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELR 177
           + +  LP M ++  G I+ ISS++G VG P L PY +SK+A+ G  E+L  EL+
Sbjct: 119 VTQAVLPYMRKQKSGKIINISSISGRVGFPGLSPYVSSKYALEGFSESLRLELK 172

Length = 280

>gnl|CDD|187636 cd08931, SDR_c9, classical (c) SDR, subgroup 9

 Score = 57.5 bits (139), Expect = 1e-09
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 9/89 (10%)

Query: 138 GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT 197
             ++  +S + I G P+L  Y A+KFAVRGL EAL  E         I+   ++P+ VDT
Sbjct: 128 ARVINTASSSAIYGQPDLAVYSATKFAVRGLTEALDVEWARHG----IRVADVWPWFVDT 183

Query: 198 GLCKNPKIKMNRLSSLPRGFG-AFPVLEA 225
            +      K    ++  +G G   PV + 
Sbjct: 184 PILT----KGETGAAPKKGLGRVLPVSDV 208

This subgroup has the canonical active site tetrad and NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 227

>gnl|CDD|187612 cd05354, SDR_c7, classical (c) SDR, subgroup 7

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 5/99 (5%)

Query: 100 ALYLGDNDFEVLPAEIG-NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPY 158
           A  L +   E L  E+  N+  L  + + F P +     G IV ++S+A +   P +  Y
Sbjct: 88  ATLLEEGALEALKQEMDVNVFGLLRLAQAFAPVLKANGGGAIVNLNSVASLKNFPAMGTY 147

Query: 159 CASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT 197
            ASK A   L + L  EL            S+ P  +DT
Sbjct: 148 SASKSAAYSLTQGLRAELAAQG----TLVLSVHPGPIDT 182

These proteins are members of the classical SDR family, with a canonical active site triad (and also an active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 235

>gnl|CDD|180440 PRK06172, PRK06172, short chain dehydrogenase; Provisional

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 4/81 (4%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           N+K + + ++  +P M+ +  G IV  +S+AG+   P +  Y ASK AV GL ++ A E 
Sbjct: 116 NVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLGAAPKMSIYAASKHAVIGLTKSAAIEY 175

Query: 177 REDARNSKIKFTSIFPFMVDT 197
            +      I+  ++ P ++DT
Sbjct: 176 AK----KGIRVNAVCPAVIDT 192

Length = 253

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 40/109 (36%), Positives = 57/109 (52%), Gaps = 4/109 (3%)

Query: 16  EIPPGLANLVNLEILTLFNNQ-IETLPTSLSSLPKLRILNLGMNRLS-SLPRGFGAFPVL 73
           +IP  L NL +LE LTL +NQ +  +P  L  +  L+ + LG N LS  +P   G    L
Sbjct: 179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL 238

Query: 74  EVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNL 121
             LDL YNNL    +P +   L+ L+ L+L  N     +P  I +L+ L
Sbjct: 239 NHLDLVYNNLTGP-IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKL 286

Length = 968

>gnl|CDD|180723 PRK06841, PRK06841, short chain dehydrogenase; Provisional

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 32/91 (35%), Positives = 41/91 (45%), Gaps = 16/91 (17%)

Query: 117 NLKNLQIILETFL------PDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLME 170
           NLK       +FL        M+    G IV ++S AG+V L   V YCASK  V G+ +
Sbjct: 120 NLKG------SFLMAQAVGRHMIAAGGGKIVNLASQAGVVALERHVAYCASKAGVVGMTK 173

Query: 171 ALAEELREDARNSKIKFTSIFPFMVDTGLCK 201
            LA E         I   +I P +V T L K
Sbjct: 174 VLALEWGPYG----ITVNAISPTVVLTELGK 200

Length = 255

>gnl|CDD|187614 cd05356, 17beta-HSD1_like_SDR_c, 17-beta-hydroxysteroid dehydrogenases (17beta-HSDs) types -1, -3, and -12, -like, classical (c) SDRs

 Score = 56.8 bits (138), Expect = 2e-09
 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 9/108 (8%)

Query: 102 YLGDNDFEVLPAEIGNLKNLQI-----ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLV 156
            + +   E    E+ ++ N+ +     +    LP M+++ +G IV ISS AG++  P L 
Sbjct: 91  SIPEYFLETPEDELQDIINVNVMATLKMTRLILPGMVKRKKGAIVNISSFAGLIPTPLLA 150

Query: 157 PYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPK 204
            Y ASK  +     AL EE     ++  I   S+ P++V T + K  K
Sbjct: 151 TYSASKAFLDFFSRALYEEY----KSQGIDVQSLLPYLVATKMSKIRK 194

This subgroup includes various 17-beta-hydroxysteroid dehydrogenases and 3-ketoacyl-CoA reductase, these are members of the SDR family, and contain the canonical active site tetrad and glycine-rich NAD-binding motif of the classical SDRs. 3-ketoacyl-CoA reductase (KAR, aka 17beta-HSD type 12, encoded by HSD17B12) acts in fatty acid elongation; 17beta- hydroxysteroid dehydrogenases are isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. 17beta-estradiol dehydrogenase (aka 17beta-HSD type 1, encoded by HSD17B1) converts estrone to estradiol. Estradiol is the predominant female sex hormone. 17beta-HSD type 3 (aka testosterone 17-beta-dehydrogenase 3, encoded by HSD17B3) catalyses the reduction of androstenedione to testosterone, it also accepts estrogens as substrates. This subgroup also contains a putative steroid dehydrogenase let-767 from Caenorhabditis elegans, mutation in which results in hypersensitivity to cholesterol limitation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 239

>gnl|CDD|235726 PRK06181, PRK06181, short chain dehydrogenase; Provisional

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 135 KNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFM 194
            +RG IV +SS+AG+ G+P    Y ASK A+ G  ++L  EL +D     +  T + P  
Sbjct: 127 ASRGQIVVVSSLAGLTGVPTRSGYAASKHALHGFFDSLRIELADD----GVAVTVVCPGF 182

Query: 195 VDTGLCKN 202
           V T + K 
Sbjct: 183 VATDIRKR 190

Length = 263

>gnl|CDD|187535 cd02266, SDR, Short-chain dehydrogenases/reductases (SDR)

 Score = 55.6 bits (134), Expect = 3e-09
 Identities = 23/60 (38%), Positives = 31/60 (51%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           N+   + +LE     M  K  G  + ISS+AG+ G P L  Y ASK A+ GL +  A E 
Sbjct: 62  NVVGTRRLLEAARELMKAKRLGRFILISSVAGLFGAPGLGGYAASKAALDGLAQQWASEG 121

SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase (KR) domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 186

>gnl|CDD|235500 PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

 Score = 56.0 bits (136), Expect = 4e-09
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           NL  +  + +     MM++  G I+ ISS+ G++G P    Y ASK  V G  ++LA EL
Sbjct: 114 NLTGVFNLTKAVARPMMKQRSGRIINISSVVGLMGNPGQANYAASKAGVIGFTKSLAREL 173

Query: 177 R 177
            
Sbjct: 174 A 174

Length = 248

>gnl|CDD|180458 PRK06194, PRK06194, hypothetical protein; Provisional

 Score = 56.6 bits (137), Expect = 5e-09
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 8/78 (10%)

Query: 128 FLPDMMEKN------RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDAR 181
           F P M+          GHIV  +SMAG++  P +  Y  SK AV  L E L ++L     
Sbjct: 125 FTPLMLAAAEKDPAYEGHIVNTASMAGLLAPPAMGIYNVSKHAVVSLTETLYQDLS--LV 182

Query: 182 NSKIKFTSIFPFMVDTGL 199
             ++  + + P+ V TG+
Sbjct: 183 TDQVGASVLCPYFVPTGI 200

Length = 287

>gnl|CDD|237220 PRK12828, PRK12828, short chain dehydrogenase; Provisional

 Score = 55.6 bits (134), Expect = 6e-09
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 4/81 (4%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           N+K      +  LP +     G IV I + A +   P +  Y A+K  V  L EALA EL
Sbjct: 113 NVKTTLNASKAALPALTASGGGRIVNIGAGAALKAGPGMGAYAAAKAGVARLTEALAAEL 172

Query: 177 REDARNSKIKFTSIFPFMVDT 197
            +      I   ++ P ++DT
Sbjct: 173 LD----RGITVNAVLPSIIDT 189

Length = 239

>gnl|CDD|187603 cd05345, BKR_3_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 3, classical (c) SDR

 Score = 55.5 bits (134), Expect = 8e-09
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 10/106 (9%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           N+K++ +  +  +P M E+  G I+ I+S AG+   P L  Y ASK  V    +A+A EL
Sbjct: 111 NVKSIYLSAQALVPHMEEQGGGVIINIASTAGLRPRPGLTWYNASKGWVVTATKAMAVEL 170

Query: 177 REDARNSKIKFTSIFPFMVDTGLCK------NPKIKMNRLSSLPRG 216
                   I+   + P   +T L         P+ +    +++P G
Sbjct: 171 APR----NIRVNCLCPVAGETPLLSMFMGEDTPENRAKFRATIPLG 212

This subgroup includes the putative Brucella melitensis biovar Abortus 2308 BKR, FabG, Mesorhizobium loti MAFF303099 FabG, and other classical SDRs. BKR, a member of the SDR family, catalyzes the NADPH-dependent reduction of acyl carrier protein in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of 4 elongation steps, which are repeated to extend the fatty acid chain thru the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I Fas utilizes one or 2 multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 248

>gnl|CDD|181762 PRK09291, PRK09291, short chain dehydrogenase; Provisional

 Score = 55.4 bits (134), Expect = 8e-09
 Identities = 20/51 (39%), Positives = 31/51 (60%)

Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRE 178
           F+  M+ + +G +V  SSMAG++  P    YCASK A+  + EA+  EL+ 
Sbjct: 115 FVRKMVARGKGKVVFTSSMAGLITGPFTGAYCASKHALEAIAEAMHAELKP 165

Length = 257

>gnl|CDD|187626 cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs

 Score = 55.2 bits (133), Expect = 9e-09
 Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 5/82 (6%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAG-IVGLPNLVPYCASKFAVRGLMEALAEE 175
           N++++ ++++  LP M+ +  G I+ +SS+A  I G+PN   Y  +K AV GL +++A +
Sbjct: 101 NVRSMYLMIKAVLPKMLARKDGSIINMSSVASSIKGVPNRFVYSTTKAAVIGLTKSVAAD 160

Query: 176 LREDARNSKIKFTSIFPFMVDT 197
             +      I+  +I P  VDT
Sbjct: 161 FAQ----QGIRCNAICPGTVDT 178

Human DHRS6, and similar proteins. These proteins are classical SDRs, with a canonical active site tetrad and a close match to the typical Gly-rich NAD-binding motif. Human DHRS6 is a cytosolic type 2 (R)-hydroxybutyrate dehydrogenase, which catalyses the conversion of (R)-hydroxybutyrate to acetoacetate. Also included in this subgroup is Escherichia coli UcpA (upstream cys P). Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Note: removed : needed to make this chiodl smaller when drew final trees: rmeoved text form description: Other proteins in this subgroup include Thermoplasma acidophilum aldohexose dehydrogenase, which has high dehydrogenase activity against D-mannose, Bacillus subtilis BacC involved in the biosynthesis of the dipeptide bacilysin and its antibiotic moiety anticapsin, Sphingomonas paucimobilis strain B90 LinC, involved in the degradation of hexachlorocyclohexane isomers...... P). Length = 241

>gnl|CDD|187665 cd09805, type2_17beta_HSD-like_SDR_c, human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

 Score = 55.4 bits (134), Expect = 9e-09
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 127 TFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELR 177
            FLP ++ + +G +V +SSM G V  P    YCASK AV    ++L  EL+
Sbjct: 120 AFLP-LLRRAKGRVVNVSSMGGRVPFPAGGAYCASKAAVEAFSDSLRRELQ 169

17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical-SDR subgroup includes the human proteins: type 2 17beta-HSD, type 6 17beta-HSD, type 2 11beta-HSD, dehydrogenase/reductase SDR family member 9, short-chain dehydrogenase/reductase family 9C member 7, 3-hydroxybutyrate dehydrogenase type 1, and retinol dehydrogenase 5. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 281

>gnl|CDD|187610 cd05352, MDH-like_SDR_c, mannitol dehydrogenase (MDH)-like, classical (c) SDRs

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 20/118 (16%)

Query: 132 MMEKNRGHIVGISSMAG-IVGLP-NLVPYCASKFAVRGLMEALAEELREDARNSKIKFTS 189
             ++ +G ++  +SM+G IV  P     Y ASK AV  L ++LA E  +      I+  S
Sbjct: 132 FKKQGKGSLIITASMSGTIVNRPQPQAAYNASKAAVIHLAKSLAVEWAKYF----IRVNS 187

Query: 190 IFPFMVDTGLCKN----------PKIKMNRLSSLPRGF-GAFPVL--EAFSFTTILDL 234
           I P  +DT L               I + R+ +LP    GA+  L  +A S+TT  DL
Sbjct: 188 ISPGYIDTDLTDFVDKELRKKWESYIPLKRI-ALPEELVGAYLYLASDASSYTTGSDL 244

NADP-mannitol dehydrogenase catalyzes the conversion of fructose to mannitol, an acyclic 6-carbon sugar. MDH is a tetrameric member of the SDR family. This subgroup also includes various other tetrameric SDRs, including Pichia stipitis D-arabinitol dehydrogenase (aka polyol dehydrogenase), Candida albicans Sou1p, a sorbose reductase, and Candida parapsilosis (S)-specific carbonyl reductase (SCR, aka S-specific alcohol dehydrogenase) which catalyzes the enantioselective reduction of 2-hydroxyacetophenone into (S)-1-phenyl-1,2-ethanediol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Length = 252

>gnl|CDD|237219 PRK12827, PRK12827, short chain dehydrogenase; Provisional

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 129 LPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
           LP M+   R G IV I+S+AG+ G    V Y ASK  + GL + LA EL    R   I  
Sbjct: 130 LPPMIRARRGGRIVNIASVAGVRGNRGQVNYAASKAGLIGLTKTLANELA--PRG--ITV 185

Query: 188 TSIFPFMVDTGLCKNP 203
            ++ P  ++T +  N 
Sbjct: 186 NAVAPGAINTPMADNA 201

Length = 249

>gnl|CDD|235990 PRK07326, PRK07326, short chain dehydrogenase; Provisional

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 131 DMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSI 190
             +++  G+I+ ISS+AG         Y ASKF + G  EA   +LR+      IK ++I
Sbjct: 126 PALKRGGGYIINISSLAGTNFFAGGAAYNASKFGLVGFSEAAMLDLRQYG----IKVSTI 181

Query: 191 FPFMVDTGLCKNP 203
            P  V T    + 
Sbjct: 182 MPGSVATHFNGHT 194

Length = 237

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 55.2 bits (133), Expect = 3e-08
 Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 4/108 (3%)

Query: 4   ITRITLSHNKLKE-IPPGLANLVNLEILTLFNNQIE-TLPTSLSSLPKLRILNLGMNRLS 61
           +  + LS N+    +P  L +L  L  L L  N++   +P  LSS  KL  L+L  N+LS
Sbjct: 477 LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536

Query: 62  -SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF 108
             +P  F   PVL  LDL+ N L+ + +P N   +E+L  + +  N  
Sbjct: 537 GQIPASFSEMPVLSQLDLSQNQLSGE-IPKNLGNVESLVQVNISHNHL 583

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.5 bits (131), Expect = 5e-08
 Identities = 78/289 (26%), Positives = 124/289 (42%), Gaps = 26/289 (8%)

Query: 9   LSHNKLK-EIPPGLANLVNLEILTLFNNQIE-TLPTSLSSLPKLRILNLGMNRLS-SLPR 65
           L +N L   IP  L NL NL+ L L+ N++   +P S+ SL KL  L+L  N LS  +P 
Sbjct: 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE 302

Query: 66  GFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQII 124
                  LE+L L  NN   + +P     L  L+ L L  N F   +P  +G   NL ++
Sbjct: 303 LVIQLQNLEILHLFSNNFTGK-IPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVL 361

Query: 125 ------LETFLPDMMEKNRGH----IVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAE 174
                 L   +P+ +  + G+    I+  +S+ G +  P  +  C S   VR    + + 
Sbjct: 362 DLSTNNLTGEIPEGL-CSSGNLFKLILFSNSLEGEI--PKSLGACRSLRRVRLQDNSFSG 418

Query: 175 EL-REDARNSKIKFTSI----FPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFT 229
           EL  E  +   + F  I        +++     P ++M  L+   + FG  P        
Sbjct: 419 ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR-NKFFGGLPDSFGSKRL 477

Query: 230 TILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNL 277
             LDL+ N  +  ++P     L  L  L L +N     +P E+ + K L
Sbjct: 478 ENLDLSRNQFSG-AVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKL 525

Length = 968

>gnl|CDD|237218 PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 52.6 bits (127), Expect = 7e-08
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
           +P M ++  G IV ISS+AG+ G P    Y A+K  + GL +ALA EL E      I   
Sbjct: 127 VPPMRKQRGGRIVNISSVAGLPGWPGRSNYAAAKAGLVGLTKALARELAE----YGITVN 182

Query: 189 SIFPFMVDT 197
            + P  +DT
Sbjct: 183 MVAPGDIDT 191

Length = 249

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 53.0 bits (127), Expect = 8e-08
 Identities = 46/128 (35%), Positives = 60/128 (46%), Gaps = 3/128 (2%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
           +  + LS NK+ ++PP +  L  LE L L NN I  L +SLS+L  L  L L  N+L  L
Sbjct: 188 LNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL 247

Query: 64  PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
           P   G    LE LDL+ N ++  S  G+   L  LR L L  N        I  L  L  
Sbjct: 248 PESIGNLSNLETLDLSNNQISSISSLGS---LTNLRELDLSGNSLSNALPLIALLLLLLE 304

Query: 124 ILETFLPD 131
           +L   L  
Sbjct: 305 LLLNLLLT 312

Length = 394

>gnl|CDD|233590 TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier-protein) reductase

 Score = 52.2 bits (126), Expect = 8e-08
 Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 7/105 (6%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           NL  +  + +  L  M+++  G I+ ISS+ G++G      Y ASK  V G  ++LA+EL
Sbjct: 107 NLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMGNAGQANYAASKAGVIGFTKSLAKEL 166

Query: 177 REDARNSKIKFTSIFPFMVDTGLCK--NPKIKMNRLSSLPRG-FG 218
              +RN  I   ++ P  +DT +    + K+K   LS +P G FG
Sbjct: 167 --ASRN--ITVNAVAPGFIDTDMTDKLSEKVKKKILSQIPLGRFG 207

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 239

>gnl|CDD|180817 PRK07060, PRK07060, short chain dehydrogenase; Provisional

 Score = 52.0 bits (125), Expect = 9e-08
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 99  RALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNR-GHIVGISSMAGIVGLPNLVP 157
            AL +    F+ + A   N +   ++       M+   R G IV +SS A +VGLP+ + 
Sbjct: 92  SALDMTAEGFDRVMAV--NARGAALVARHVARAMIAAGRGGSIVNVSSQAALVGLPDHLA 149

Query: 158 YCASKFAVRGLMEALAEEL 176
           YCASK A+  +   L  EL
Sbjct: 150 YCASKAALDAITRVLCVEL 168

Length = 245

>gnl|CDD|181518 PRK08643, PRK08643, acetoin reductase; Validated

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 138 GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRED 179
           G I+  +S AG+VG P L  Y ++KFAVRGL +  A +L  +
Sbjct: 132 GKIINATSQAGVVGNPELAVYSSTKFAVRGLTQTAARDLASE 173

Length = 256

>gnl|CDD|180984 PRK07454, PRK07454, short chain dehydrogenase; Provisional

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
           LP M  +  G I+ +SS+A     P    YC SK A+    + LAEE R       I+  
Sbjct: 126 LPGMRARGGGLIINVSSIAARNAFPQWGAYCVSKAALAAFTKCLAEEERSHG----IRVC 181

Query: 189 SIFPFMVDTGLCKNPKIKMN 208
           +I    V+T L     ++ +
Sbjct: 182 TITLGAVNTPLWDTETVQAD 201

Length = 241

>gnl|CDD|187648 cd08944, SDR_c12, classical (c) SDR, subgroup 12

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 5/100 (5%)

Query: 103 LGDNDFEVLPAEIG-NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCAS 161
           + D D  V    +  NL+   +      P M+ +  G IV +SS+AG  G P    Y AS
Sbjct: 94  IIDTDLAVWDQTMAINLRGTFLCCRHAAPRMIARGGGSIVNLSSIAGQSGDPGYGAYGAS 153

Query: 162 KFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCK 201
           K A+R L   LA EL    R++ I+  ++ P ++DT L  
Sbjct: 154 KAAIRNLTRTLAAEL----RHAGIRCNALAPGLIDTPLLL 189

These are classical SDRs, with the canonical active site tetrad and glycine-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 246

>gnl|CDD|235633 PRK05872, PRK05872, short chain dehydrogenase; Provisional

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 5/50 (10%)

Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELR 177
            LP ++E  RG+++ +SS+A     P +  YCASK  V    EA A  LR
Sbjct: 127 TLPALIE-RRGYVLQVSSLAAFAAAPGMAAYCASKAGV----EAFANALR 171

Length = 296

>gnl|CDD|187594 cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs

 Score = 51.0 bits (123), Expect = 2e-07
 Identities = 21/60 (35%), Positives = 35/60 (58%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           NL  +  + +  +  M+++  G I+ ISS+ G++G P    Y ASK  V G  ++LA+EL
Sbjct: 108 NLTGVFNVTQAVIRAMIKRRSGRIINISSVVGLIGNPGQANYAASKAGVIGFTKSLAKEL 167

This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 240

>gnl|CDD|135637 PRK05876, PRK05876, short chain dehydrogenase; Provisional

 Score = 51.1 bits (122), Expect = 2e-07
 Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 8/101 (7%)

Query: 125 LETFLPDMMEKNRG-HIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNS 183
           +E FLP ++E+  G H+V  +S AG+V    L  Y  +K+ V GL E LA E+  D    
Sbjct: 122 VEAFLPRLLEQGTGGHVVFTASFAGLVPNAGLGAYGVAKYGVVGLAETLAREVTADG--- 178

Query: 184 KIKFTSIFPFMVDTGLCKNP-KIKMNR--LSSLPRGFGAFP 221
            I  + + P +V+T L  N  +I+      SS     G  P
Sbjct: 179 -IGVSVLCPMVVETNLVANSERIRGAACAQSSTTGSPGPLP 218

Length = 275

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 51.5 bits (123), Expect = 3e-07
 Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 1/99 (1%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
           +  + LS N L ++P  L+NL NL  L L  N+I  LP  +  L  L  L+L  N +  L
Sbjct: 165 LKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIEL 224

Query: 64  PRGFGAFPVLEVLDLTYNNL-NEQSLPGNFFMLETLRAL 101
                    L  L+L+ N L +     GN   LETL   
Sbjct: 225 LSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLS 263

Length = 394

>gnl|CDD|181335 PRK08264, PRK08264, short chain dehydrogenase; Validated

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 6/71 (8%)

Query: 128 FLPDMMEKN-RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIK 186
           F P ++  N  G IV + S+   V  PNL  Y ASK A   L +AL  EL         +
Sbjct: 116 FAP-VLAANGGGAIVNVLSVLSWVNFPNLGTYSASKAAAWSLTQALRAELAP----QGTR 170

Query: 187 FTSIFPFMVDT 197
              + P  +DT
Sbjct: 171 VLGVHPGPIDT 181

Length = 238

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 46.8 bits (112), Expect = 3e-07
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 26 NLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNNL 83
          NL+ L L NN++  +P  +   LP L++L+L  N L+S+    F   P L  LDL+ NNL
Sbjct: 1  NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215720 pfam00106, adh_short, short chain dehydrogenase

 Score = 49.5 bits (119), Expect = 3e-07
 Identities = 14/46 (30%), Positives = 21/46 (45%)

Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELR 177
             + + G  V  SS+AG++G P    Y A+  A+  L E    E  
Sbjct: 122 TRDLDLGAFVLFSSVAGVLGSPGQANYAAANAALDALAEHRRAEGL 167

This family contains a wide variety of dehydrogenases. Length = 167

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.0 bits (122), Expect = 5e-07
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 40  LPTSLSSLPKLRILNLGMNRL-SSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETL 98
           +P  +S L  L+ +NL  N +  ++P   G+   LEVLDL+YN+ N  S+P +   L +L
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN-GSIPESLGQLTSL 492

Query: 99  RALYLGDNDFE-VLPAEIG 116
           R L L  N     +PA +G
Sbjct: 493 RILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|183833 PRK12939, PRK12939, short chain dehydrogenase; Provisional

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 23/63 (36%), Positives = 34/63 (53%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           N++   ++L   LP + +  RG IV ++S   + G P L  Y ASK AV G+  +LA EL
Sbjct: 115 NVRGTFLMLRAALPHLRDSGRGRIVNLASDTALWGAPKLGAYVASKGAVIGMTRSLAREL 174

Query: 177 RED 179
              
Sbjct: 175 GGR 177

Length = 250

>gnl|CDD|187605 cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 20/63 (31%), Positives = 31/63 (49%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           NL  +  + +     M+++  G I+ I S+   +G P +  Y ASK  V GL +ALA E 
Sbjct: 113 NLNGVFFVSQAVARHMIKQGHGKIINICSLLSELGGPPVPAYAASKGGVAGLTKALATEW 172

Query: 177 RED 179
              
Sbjct: 173 ARH 175

Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248

>gnl|CDD|235628 PRK05855, PRK05855, short chain dehydrogenase; Validated

 Score = 50.7 bits (122), Expect = 6e-07
 Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 5/79 (6%)

Query: 128 FLPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIK 186
           F   M+E+   GHIV ++S A      +L  Y  SK AV  L E L  EL   A    I 
Sbjct: 434 FGRQMVERGTGGHIVNVASAAAYAPSRSLPAYATSKAAVLMLSECLRAEL--AAAG--IG 489

Query: 187 FTSIFPFMVDTGLCKNPKI 205
            T+I P  VDT +    + 
Sbjct: 490 VTAICPGFVDTNIVATTRF 508

Length = 582

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.2 bits (108), Expect = 8e-07
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 4  ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRL 60
          +  + LS+N+L  IP G    L NL++L L  N + ++ P + S LP LR L+L  N L
Sbjct: 2  LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|187644 cd08940, HBDH_SDR_c, d-3-hydroxybutyrate dehydrogenase (HBDH), classical (c) SDRs

 Score = 49.4 bits (118), Expect = 8e-07
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
           LP M ++  G I+ I+S+ G+V   N   Y A+K  V GL + +A E       + +   
Sbjct: 124 LPHMKKQGWGRIINIASVHGLVASANKSAYVAAKHGVVGLTKVVALETAG----TGVTCN 179

Query: 189 SIFPFMVDTGLCKN 202
           +I P  V T L + 
Sbjct: 180 AICPGWVLTPLVEK 193

DHBDH, an NAD+ -dependent enzyme, catalyzes the interconversion of D-3-hydroxybutyrate and acetoacetate. It is a classical SDR, with the canonical NAD-binding motif and active site tetrad. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 258

>gnl|CDD|187584 cd05323, ADH_SDR_c_like, insect type alcohol dehydrogenase (ADH)-like, classical (c) SDRs

 Score = 49.2 bits (118), Expect = 9e-07
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 4/82 (4%)

Query: 121 LQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDA 180
             + L     +   K  G IV I S+AG+   P    Y ASK  V G   +LA+ L    
Sbjct: 118 TYLALHYMDKNKGGKG-GVIVNIGSVAGLYPAPQFPVYSASKHGVVGFTRSLADLLE--- 173

Query: 181 RNSKIKFTSIFPFMVDTGLCKN 202
             + ++  +I P   +T L  +
Sbjct: 174 YKTGVRVNAICPGFTNTPLLPD 195

This subgroup contains insect type ADH, and 15-hydroxyprostaglandin dehydrogenase (15-PGDH) type I; these proteins are classical SDRs. ADH catalyzes the NAD+-dependent oxidation of alcohols to aldehydes/ketones. This subgroup is distinct from the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase/reductase family, and evolved in fruit flies to allow the digestion of fermenting fruit. 15-PGDH catalyzes the NAD-dependent interconversion of (5Z,13E)-(15S)-11alpha,15-dihydroxy-9-oxoprost-13-enoate and (5Z,13E)-11alpha-hydroxy-9,15-dioxoprost-13-enoate, and has a typical SDR glycine-rich NAD-binding motif, which is not fully present in ADH. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 244

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 5   TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP 64
             + LS N L  +P  L+ L++L++L+           +L +L  L  L+L +NRL S  
Sbjct: 50  LALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNI 109

Query: 65  RGFGAFPVLEVLDLTYNNLNEQSLPGN-FFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
                   L  LDL  NN+    +P     +   L+ L L DN  E LP+ + NL NL+ 
Sbjct: 110 SELLELTNLTSLDLDNNNIT--DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKN 167

Length = 394

>gnl|CDD|236372 PRK09072, PRK09072, short chain dehydrogenase; Provisional

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 102 YLGDNDFEVLPAEIG-NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA 160
            L D D E +   +  NL     +    LP +  +    +V + S  G +G P    YCA
Sbjct: 95  LLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFGSIGYPGYASYCA 154

Query: 161 SKFAVRGLMEALAEEL 176
           SKFA+RG  EAL  EL
Sbjct: 155 SKFALRGFSEALRREL 170

Length = 263

>gnl|CDD|187641 cd08936, CR_SDR_c, Porcine peroxisomal carbonyl reductase like, classical (c) SDR

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 4/81 (4%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           N+K   ++ +  +P+M ++  G +V +SS+A     P L PY  SK A+ GL + LA EL
Sbjct: 119 NVKATALMTKAVVPEMEKRGGGSVVIVSSVAAFHPFPGLGPYNVSKTALLGLTKNLAPEL 178

Query: 177 REDARNSKIKFTSIFPFMVDT 197
               RN  I+   + P ++ T
Sbjct: 179 --APRN--IRVNCLAPGLIKT 195

This subgroup contains porcine peroxisomal carbonyl reductase and similar proteins. The porcine enzyme efficiently reduces retinals. This subgroup also includes human dehydrogenase/reductase (SDR family) member 4 (DHRS4), and human DHRS4L1. DHRS4 is a peroxisomal enzyme with 3beta-hydroxysteroid dehydrogenase activity; it catalyzes the reduction of 3-keto-C19/C21-steroids into 3beta-hydroxysteroids more efficiently than it does the retinal reduction. The human DHRS4 gene cluster contains DHRS4, DHRS4L2 and DHRS4L1. DHRS4L2 and DHRS4L1 are paralogs of DHRS4, DHRS4L2 being the most recent member. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 256

>gnl|CDD|235545 PRK05650, PRK05650, short chain dehydrogenase; Provisional

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 21/52 (40%), Positives = 28/52 (53%)

Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRED 179
           FLP    +  G IV I+SMAG++  P +  Y  +K  V  L E L  EL +D
Sbjct: 119 FLPLFKRQKSGRIVNIASMAGLMQGPAMSSYNVAKAGVVALSETLLVELADD 170

Length = 270

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 3/69 (4%)

Query: 7   ITLSHNKLK-EIPPGLANLVNLEILTLFNNQIE-TLPTSLSSLPKLRILNLGMNRLSS-L 63
           I LS N ++  IPP L ++ +LE+L L  N    ++P SL  L  LRILNL  N LS  +
Sbjct: 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Query: 64  PRGFGAFPV 72
           P   G   +
Sbjct: 507 PAALGGRLL 515

Length = 623

>gnl|CDD|235725 PRK06179, PRK06179, short chain dehydrogenase; Provisional

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 21/50 (42%), Positives = 29/50 (58%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRE 178
           LP M  +  G I+ ISS+ G +  P +  Y ASK AV G  E+L  E+R+
Sbjct: 116 LPHMRAQGSGRIINISSVLGFLPAPYMALYAASKHAVEGYSESLDHEVRQ 165

Length = 270

>gnl|CDD|187628 cd05370, SDR_c2, classical (c) SDR, subgroup 2

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 7/98 (7%)

Query: 104 GDNDFEVLPAEIG-NLKN-LQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCAS 161
             +D +    EI  NL   +++I   FLP + ++    IV +SS    V +     YCA+
Sbjct: 97  PASDLDKADTEIDTNLIGPIRLIKA-FLPHLKKQPEATIVNVSSGLAFVPMAANPVYCAT 155

Query: 162 KFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL 199
           K A+     AL  +L    +++ ++   I P  VDT L
Sbjct: 156 KAALHSYTLALRHQL----KDTGVEVVEIVPPAVDTEL 189

Short-chain dehydrogenases/reductases (SDRs, aka Tyrosine-dependent oxidoreductases) are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 228

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 48.3 bits (115), Expect = 4e-06
 Identities = 45/126 (35%), Positives = 63/126 (50%), Gaps = 6/126 (4%)

Query: 3   YITRITLSHNKLK-EIPPGLANLV-NLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRL 60
           YI  I LS+N+L   IP  +     +L  L L NN   T      S+P L  L+L  N L
Sbjct: 94  YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF-TGSIPRGSIPNLETLDLSNNML 152

Query: 61  S-SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNL 118
           S  +P   G+F  L+VLDL  N L  + +P +   L +L  L L  N     +P E+G +
Sbjct: 153 SGEIPNDIGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFLTLASNQLVGQIPRELGQM 211

Query: 119 KNLQII 124
           K+L+ I
Sbjct: 212 KSLKWI 217

Length = 968

>gnl|CDD|180822 PRK07069, PRK07069, short chain dehydrogenase; Validated

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNS-KIKF 187
           LP +       IV ISS+A     P+   Y ASK AV  L +++A +    AR    ++ 
Sbjct: 122 LPYLRASQPASIVNISSVAAFKAEPDYTAYNASKAAVASLTKSIALDC---ARRGLDVRC 178

Query: 188 TSIFPFMVDTGL 199
            SI P  + TG+
Sbjct: 179 NSIHPTFIRTGI 190

Length = 251

>gnl|CDD|211705 TIGR01963, PHB_DH, 3-hydroxybutyrate dehydrogenase

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
           LP M ++  G I+ I+S  G+V  P    Y A+K  + GL + LA E+ E      I   
Sbjct: 121 LPHMKKQGWGRIINIASAHGLVASPFKSAYVAAKHGLIGLTKVLALEVAE----HGITVN 176

Query: 189 SIFPFMVDTGL 199
           +I P  V T L
Sbjct: 177 AICPGYVRTPL 187

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. Length = 255

>gnl|CDD|183772 PRK12823, benD, 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 6/53 (11%)

Query: 129 LPDMMEKNRGHIVGISSMA--GIVGLPNLVPYCASKFAVRGLMEALAEELRED 179
           LP M+ +  G IV +SS+A  GI    N VPY A+K  V  L  +LA E  E 
Sbjct: 128 LPHMLAQGGGAIVNVSSIATRGI----NRVPYSAAKGGVNALTASLAFEYAEH 176

Length = 260

>gnl|CDD|187609 cd05351, XR_like_SDR_c, xylulose reductase-like, classical (c) SDRs

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 11/94 (11%)

Query: 105 DNDFEVLPAEIGNLKNLQIILETFLPDMMEKN-RGHIVGISSMAGIVGLPNLVPYCASKF 163
           D  F+V      N++ +  + +     M+ +   G IV +SS A    L N   YC++K 
Sbjct: 101 DRSFDV------NVRAVIHVSQIVARGMIARGVPGSIVNVSSQASQRALTNHTVYCSTKA 154

Query: 164 AVRGLMEALAEELREDARNSKIKFTSIFPFMVDT 197
           A+  L + +A EL       KI+  S+ P +V T
Sbjct: 155 ALDMLTKVMALELGP----HKIRVNSVNPTVVMT 184

Members of this subgroup include proteins identified as L-xylulose reductase (XR) and carbonyl reductase; they are members of the SDR family. XR, catalyzes the NADP-dependent reduction of L-xyulose and other sugars. Tetrameric mouse carbonyl reductase is involved in the metabolism of biogenic and xenobiotic carbonyl compounds. This subgroup also includes tetrameric chicken liver D-erythrulose reductase, which catalyzes the reduction of D-erythrulose to D-threitol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Length = 244

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 26 NLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP 64
          NLE L L NNQI  LP  LS+LP L  L+L  N+++ L 
Sbjct: 2  NLETLDLSNNQITDLP-PLSNLPNLETLDLSGNKITDLS 39

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|180448 PRK06182, PRK06182, short chain dehydrogenase; Validated

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 6/71 (8%)

Query: 108 FEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRG 167
           FEV      NL     + +  LP M  +  G I+ ISSM G +  P    Y A+KFA+ G
Sbjct: 102 FEV------NLFGAARLTQLVLPHMRAQRSGRIINISSMGGKIYTPLGAWYHATKFALEG 155

Query: 168 LMEALAEELRE 178
             +AL  E+  
Sbjct: 156 FSDALRLEVAP 166

Length = 273

>gnl|CDD|187585 cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 8/74 (10%)

Query: 126 ETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKI 185
           +  LP + +   G IV +SS  G +       Y  SK A+  L   LA+EL+E      I
Sbjct: 119 QALLPLLKKSPAGRIVNVSSGLGSLT----SAYGVSKAALNALTRILAKELKET----GI 170

Query: 186 KFTSIFPFMVDTGL 199
           K  +  P  V T +
Sbjct: 171 KVNACCPGWVKTDM 184

PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 225

>gnl|CDD|171820 PRK12936, PRK12936, 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 6/85 (7%)

Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIF 191
           MM +  G I+ I+S+ G+ G P    YCASK  + G  ++LA+E+    RN  +    + 
Sbjct: 126 MMRRRYGRIINITSVVGVTGNPGQANYCASKAGMIGFSKSLAQEIA--TRN--VTVNCVA 181

Query: 192 PFMVDTGLCK--NPKIKMNRLSSLP 214
           P  +++ +    N K K   + ++P
Sbjct: 182 PGFIESAMTGKLNDKQKEAIMGAIP 206

Length = 245

>gnl|CDD|235713 PRK06139, PRK06139, short chain dehydrogenase; Provisional

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
           LP   ++  G  + + S+ G    P    Y ASKF +RG  EAL  EL +      I   
Sbjct: 127 LPIFKKQGHGIFINMISLGGFAAQPYAAAYSASKFGLRGFSEALRGELADHP---DIHVC 183

Query: 189 SIFPFMVDT 197
            ++P  +DT
Sbjct: 184 DVYPAFMDT 192

Length = 330

>gnl|CDD|235813 PRK06482, PRK06482, short chain dehydrogenase; Provisional

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 17/47 (36%), Positives = 27/47 (57%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEE 175
           LP +  +  G IV +SS  G +  P    Y A+K+ + G +EA+A+E
Sbjct: 119 LPHLRRQGGGRIVQVSSEGGQIAYPGFSLYHATKWGIEGFVEAVAQE 165

Length = 276

>gnl|CDD|187623 cd05365, 7_alpha_HSDH_SDR_c, 7 alpha-hydroxysteroid dehydrogenase (7 alpha-HSDH), classical (c) SDRs

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 7/91 (7%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
            P M +   G I+ ISSM+       +  Y +SK AV  +   LA +L        I+  
Sbjct: 120 APHMQKAGGGAILNISSMSSENKNVRIAAYGSSKAAVNHMTRNLAFDLGPK----GIRVN 175

Query: 189 SIFPFMVDTGLCKN---PKIKMNRLSSLPRG 216
           ++ P  V T    +   P+I+   L   P G
Sbjct: 176 AVAPGAVKTDALASVLTPEIERAMLKHTPLG 206

This bacterial subgroup contains 7 alpha-HSDHs, including Escherichia coli 7 alpha-HSDH. 7 alpha-HSDH, a member of the SDR family, catalyzes the NAD+ -dependent dehydrogenation of a hydroxyl group at position 7 of the steroid skeleton of bile acids. In humans the two primary bile acids are cholic and chenodeoxycholic acids, these are formed from cholesterol in the liver. Escherichia coli 7 alpha-HSDH dehydroxylates these bile acids in the human intestine. Mammalian 7 alpha-HSDH activity has been found in livers. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 242

>gnl|CDD|224852 COG1941, FrhG, Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 24/82 (29%)

Query: 271 IGNLKNLQIMLEPR----WVISMGSCANGGG--------------YYHYSYSVVRGCDR- 311
           + + + L+++ E R     V+++GSCA  GG                +         +  
Sbjct: 61  VCDEEELELVKELREKAKIVVALGSCAVTGGVQGLRNKSGEELLRPVYGDAKSTFNEESV 120

Query: 312 -----IIPVDIYVPGCPPTAEA 328
                +I VD  +PGCPP+ E 
Sbjct: 121 VPLGEVIDVDYAIPGCPPSPEE 142

Length = 247

>gnl|CDD|180617 PRK06550, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 19/57 (33%), Positives = 30/57 (52%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALA 173
           NL +  ++   +LP M+E+  G I+ + S+A  V       Y ASK A+ G  + LA
Sbjct: 99  NLTSTFLLTRAYLPQMLERKSGIIINMCSIASFVAGGGGAAYTASKHALAGFTKQLA 155

Length = 235

>gnl|CDD|187642 cd08937, DHB_DH-like_SDR_c, 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase (DHB DH)-like, classical (c) SDR

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 6/54 (11%)

Query: 128 FLPDMMEKNRGHIVGISSMA--GIVGLPNLVPYCASKFAVRGLMEALAEELRED 179
            LP M+E+ +G IV +SS+A  GI      +PY A+K  V  L  +LA E   D
Sbjct: 123 VLPHMLERQQGVIVNVSSIATRGI----YRIPYSAAKGGVNALTASLAFEHARD 172

DHB DH (aka 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase) catalyzes the NAD-dependent conversion of 1,2-dihydroxycyclohexa-3,4-diene carboxylate to a catechol. This subgroup also contains Pseudomonas putida F1 CmtB, 2,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase, the second enzyme in the pathway for catabolism of p-cumate catabolism. This subgroup shares the glycine-rich NAD-binding motif of the classical SDRs and shares the same catalytic triad; however, the upstream Asn implicated in cofactor binding or catalysis in other SDRs is generally substituted by a Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 256

>gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated

 Score = 44.8 bits (106), Expect = 4e-05
 Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 6/78 (7%)

Query: 121 LQIILETFLPDMMEKNRGH-IVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRED 179
             +  E  L  M+E+  G  IV ++S AG+V LP    Y ASK AV  L  +LA E    
Sbjct: 117 YLVAREA-LRLMIEQGHGAAIVNVASGAGLVALPKRTAYSASKAAVISLTRSLACEW--- 172

Query: 180 ARNSKIKFTSIFPFMVDT 197
                I+  ++ P  V T
Sbjct: 173 -AAKGIRVNAVLPGYVRT 189

Length = 520

>gnl|CDD|168186 PRK05693, PRK05693, short chain dehydrogenase; Provisional

 Score = 44.0 bits (104), Expect = 6e-05
 Identities = 19/45 (42%), Positives = 29/45 (64%)

Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           ++ ++RG +V I S++G++  P    YCASK AV  L +AL  EL
Sbjct: 117 LLRRSRGLVVNIGSVSGVLVTPFAGAYCASKAAVHALSDALRLEL 161

Length = 274

>gnl|CDD|181305 PRK08226, PRK08226, short chain dehydrogenase; Provisional

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAG-IVGLPNLVPYCASKFAVRGLMEALAEE 175
           N+K +  + +  LP+M+ +  G IV +SS+ G +V  P    Y  +K A+ GL ++LA E
Sbjct: 113 NIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKAAIVGLTKSLAVE 172

Length = 263

>gnl|CDD|187631 cd05373, SDR_c10, classical (c) SDR, subgroup 10

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 14/48 (29%), Positives = 25/48 (52%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
              M+ + RG I+   + A + G      +  +KFA+R L +++A EL
Sbjct: 120 AKRMLARGRGTIIFTGATASLRGRAGFAAFAGAKFALRALAQSMAREL 167

This subgroup resembles the classical SDRs, but has an incomplete match to the canonical glycine rich NAD-binding motif and lacks the typical active site tetrad (instead of the critical active site Tyr, it has Phe, but contains the nearby Lys). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 238

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 9e-05
 Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 49  KLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDND 107
            L+ L+L  NRL+ +P G F   P L+VLDL+ NNL   S P  F  L +LR+L L  N+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSIS-PEAFSGLPSLRSLDLSGNN 59

Query: 108 F 108
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|236207 PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 43.7 bits (104), Expect = 9e-05
 Identities = 22/43 (51%), Positives = 27/43 (62%), Gaps = 4/43 (9%)

Query: 138 GHIVGISSMAGIVGLPNL--VPYCASKFAVRGLMEALAEELRE 178
           G IVG+SS++GI G  N     Y ASK  V GL++ALA  L E
Sbjct: 336 GRIVGVSSISGIAG--NRGQTNYAASKAGVIGLVQALAPLLAE 376

Length = 450

>gnl|CDD|182531 PRK10538, PRK10538, malonic semialdehyde reductase; Provisional

 Score = 43.2 bits (102), Expect = 9e-05
 Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 4/79 (5%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           N K L  +    LP M+E+N GHI+ I S AG         Y A+K  VR      +  L
Sbjct: 106 NNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVR----QFSLNL 161

Query: 177 REDARNSKIKFTSIFPFMV 195
           R D   + ++ T I P +V
Sbjct: 162 RTDLHGTAVRVTDIEPGLV 180

Length = 248

>gnl|CDD|187587 cd05326, secoisolariciresinol-DH_like_SDR_c, secoisolariciresinol dehydrogenase (secoisolariciresinol-DH)-like, classical (c) SDRs

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIF 191
           M+   +G IV ++S+AG+VG      Y ASK AV GL  + A EL E      I+   + 
Sbjct: 127 MIPAKKGSIVSVASVAGVVGGLGPHAYTASKHAVLGLTRSAATELGE----HGIRVNCVS 182

Query: 192 PFMVDTGL 199
           P+ V T L
Sbjct: 183 PYGVATPL 190

Podophyllum secoisolariciresinol-DH is a homo tetrameric, classical SDR that catalyzes the NAD-dependent conversion of (-)-secoisolariciresinol to (-)-matairesinol via a (-)-lactol intermediate. (-)-Matairesinol is an intermediate to various 8'-lignans, including the cancer-preventive mammalian lignan, and those involved in vascular plant defense. This subgroup also includes rice momilactone A synthase which catalyzes the conversion of 3beta-hydroxy-9betaH-pimara-7,15-dien-19,6beta-olide into momilactone A, Arabidopsis ABA2 which during abscisic acid (ABA) biosynthesis, catalyzes the conversion of xanthoxin to abscisic aldehyde and, maize Tasselseed2 which participate in the maize sex determination pathway. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 249

>gnl|CDD|180462 PRK06198, PRK06198, short chain dehydrogenase; Provisional

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 131 DMMEKN-RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRED 179
            M  +   G IV I SM+   G P L  YCASK A+  L    A  L  +
Sbjct: 129 LMRRRKAEGTIVNIGSMSAHGGQPFLAAYCASKGALATLTRNAAYALLRN 178

Length = 260

>gnl|CDD|183773 PRK12824, PRK12824, acetoacetyl-CoA reductase; Provisional

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAG---IVGLPNLVPYCASKFAVRGLMEALA 173
           NL ++  + +     M E+  G I+ ISS+ G     G  N   Y A+K  + G  +ALA
Sbjct: 111 NLNSVFNVTQPLFAAMCEQGYGRIINISSVNGLKGQFGQTN---YSAAKAGMIGFTKALA 167

Query: 174 EE 175
            E
Sbjct: 168 SE 169

Length = 245

>gnl|CDD|235924 PRK07063, PRK07063, short chain dehydrogenase; Provisional

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
           LP M+E+ RG IV I+S      +P   PY  +K  + GL  AL  E    ARN  ++  
Sbjct: 129 LPGMVERGRGSIVNIASTHAFKIIPGCFPYPVAKHGLLGLTRALGIEYA--ARN--VRVN 184

Query: 189 SIFPFMVDTGL 199
           +I P  ++T L
Sbjct: 185 AIAPGYIETQL 195

Length = 260

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 3/123 (2%)

Query: 1   MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRL 60
           +L +  ++ S     +    L NL+ L  L L  N++ +  + L  L  L  L+L  N +
Sbjct: 69  LLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNI 128

Query: 61  SSLPRGFGAFPV-LEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLK 119
           + +P   G     L+ LDL+ N +  +SLP     L  L+ L L  ND   LP  + NL 
Sbjct: 129 TDIPPLIGLLKSNLKELDLSDNKI--ESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLS 186

Query: 120 NLQ 122
           NL 
Sbjct: 187 NLN 189

Length = 394

>gnl|CDD|187649 cd08945, PKR_SDR_c, Polyketide ketoreductase, classical (c) SDR

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 4/66 (6%)

Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIF 191
           M+E+  G I+ I+S  G  G+ +  PY ASK  V G  +AL  EL   AR + I   ++ 
Sbjct: 128 MLERGTGRIINIASTGGKQGVVHAAPYSASKHGVVGFTKALGLEL---AR-TGITVNAVC 183

Query: 192 PFMVDT 197
           P  V+T
Sbjct: 184 PGFVET 189

Polyketide ketoreductase (KR) is a classical SDR with a characteristic NAD-binding pattern and active site tetrad. Aromatic polyketides include various aromatic compounds of pharmaceutical interest. Polyketide KR, part of the type II polyketide synthase (PKS) complex, is comprised of stand-alone domains that resemble the domains found in fatty acid synthase and multidomain type I PKS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 258

>gnl|CDD|187595 cd05334, DHPR_SDR_c_like, dihydropteridine reductase (DHPR), classical (c) SDRs

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 10/72 (13%)

Query: 138 GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT 197
           G +V   + A +   P ++ Y A+K AV  L ++LA E       S     +I P  +DT
Sbjct: 119 GLLVLTGAKAALEPTPGMIGYGAAKAAVHQLTQSLAAENSGLPAGSTA--NAILPVTLDT 176

Query: 198 GLCKNPKIKMNR 209
                P    NR
Sbjct: 177 -----P---ANR 180

Dihydropteridine reductase is an NAD-binding protein related to the SDRs. It converts dihydrobiopterin into tetrahydrobiopterin, a cofactor necessary in catecholamines synthesis. Dihydropteridine reductase has the YXXXK of these tyrosine-dependent oxidoreductases, but lacks the typical upstream Asn and Ser catalytic residues. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 221

>gnl|CDD|236357 PRK08945, PRK08945, putative oxoacyl-(acyl carrier protein) reductase; Provisional

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 5/74 (6%)

Query: 120 NLQIIL-ETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRE 178
           N   +L +  LP +++     +V  SS  G  G  N   Y  SKFA  G+M+ LA+E   
Sbjct: 126 NATFMLTQALLPLLLKSPAASLVFTSSSVGRQGRANWGAYAVSKFATEGMMQVLADEY-- 183

Query: 179 DARNSKIKFTSIFP 192
             + + ++   I P
Sbjct: 184 --QGTNLRVNCINP 195

Length = 247

>gnl|CDD|181198 PRK08017, PRK08017, oxidoreductase; Provisional

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
           LP M+    G IV  SS+ G++  P    Y ASK+A    +EA ++ LR + R+S IK +
Sbjct: 117 LPAMLPHGEGRIVMTSSVMGLISTPGRGAYAASKYA----LEAWSDALRMELRHSGIKVS 172

Query: 189 SIFPFMVDTGLCKN 202
            I P  + T    N
Sbjct: 173 LIEPGPIRTRFTDN 186

Length = 256

>gnl|CDD|187591 cd05330, cyclohexanol_reductase_SDR_c, cyclohexanol reductases, including levodione reductase, classical (c) SDRs

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 23/59 (38%), Positives = 30/59 (50%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEE 175
           NL+ +   LE  L  M E+  G IV  +S+ GI G+ N   Y A+K  V GL    A E
Sbjct: 114 NLRGVFYGLEKVLKVMREQGSGMIVNTASVGGIRGVGNQSGYAAAKHGVVGLTRNSAVE 172

Cyloclohexanol reductases,including (6R)-2,2,6-trimethyl-1,4-cyclohexanedione (levodione) reductase of Corynebacterium aquaticum, catalyze the reversible oxidoreduction of hydroxycyclohexanone derivatives. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257

>gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 121 LQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDA 180
           +++IL   LP M E+  GH+V +SS+      P    Y ASK A+    +  A E   D 
Sbjct: 486 VRLILG-LLPHMRERRFGHVVNVSSIGVQTNAPRFSAYVASKAALDAFSDVAASETLSDG 544

Query: 181 RNSKIKFTSI 190
               I FT+I
Sbjct: 545 ----ITFTTI 550

Length = 657

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 37.5 bits (88), Expect = 4e-04
 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)

Query: 4  ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLP 41
          +  + LS+N++ ++PP L+NL NLE L L  N+I  L 
Sbjct: 3  LETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLS 39

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|187640 cd08935, mannonate_red_SDR_c, putative D-mannonate oxidoreductase, classical (c) SDR

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 6/55 (10%)

Query: 127 TFLP------DMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEE 175
           +FLP      DM+E+  G I+ ISSM     L  +  Y A+K AV    + LA E
Sbjct: 131 SFLPSQVFGKDMLEQKGGSIINISSMNAFSPLTKVPAYSAAKAAVSNFTQWLAVE 185

D-mannonate oxidoreductase catalyzes the NAD-dependent interconversion of D-mannonate and D-fructuronate. This subgroup includes Bacillus subtitils UxuB/YjmF, a putative D-mannonate oxidoreductase; the B. subtilis UxuB gene is part of a putative ten-gene operon (the Yjm operon) involved in hexuronate catabolism. Escherichia coli UxuB does not belong to this subgroup. This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 271

>gnl|CDD|171821 PRK12937, PRK12937, short chain dehydrogenase; Provisional

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 11/104 (10%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           NL+   ++L      +     G I+ +S+    + LP   PY ASK AV GL+  LA EL
Sbjct: 114 NLRGAFVVLREAARHL--GQGGRIINLSTSVIALPLPGYGPYAASKAAVEGLVHVLANEL 171

Query: 177 REDARNSKIKFTSIFPFMVDTGLCKNPK-----IKMNRLSSLPR 215
           R   R   I   ++ P  V T L  N K      ++  L+ L R
Sbjct: 172 R--GRG--ITVNAVAPGPVATELFFNGKSAEQIDQLAGLAPLER 211

Length = 245

>gnl|CDD|187638 cd08933, RDH_SDR_c, retinal dehydrogenase-like, classical (c) SDR

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 15/41 (36%), Positives = 27/41 (65%)

Query: 133 MEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALA 173
           + K++G+I+ +SS+ G +G     PY A+K A+  + +ALA
Sbjct: 134 LRKSQGNIINLSSLVGSIGQKQAAPYVATKGAITAMTKALA 174

These classical SDRs includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the short-chain dehydrogenases/reductase family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 261

>gnl|CDD|180343 PRK05993, PRK05993, short chain dehydrogenase; Provisional

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 20/48 (41%), Positives = 28/48 (58%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           +P M ++ +G IV  SS+ G+V +     Y ASKFA+ GL   L  EL
Sbjct: 119 IPVMRKQGQGRIVQCSSILGLVPMKYRGAYNASKFAIEGLSLTLRMEL 166

Length = 277

>gnl|CDD|130890 TIGR01831, fabG_rel, 3-oxoacyl-(acyl-carrier-protein) reductase, putative

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 5/87 (5%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
           +P +  +  G I+ ++S++G++G    V Y A+K  + G  +ALA EL +     KI   
Sbjct: 120 MPMIRARQGGRIITLASVSGVMGNRGQVNYSAAKAGLIGATKALAVELAK----RKITVN 175

Query: 189 SIFPFMVDTGLCKN-PKIKMNRLSSLP 214
            I P ++DT +           L ++P
Sbjct: 176 CIAPGLIDTEMLAEVEHDLDEALKTVP 202

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 239

>gnl|CDD|181225 PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           N   + ++ +     M+++  G I+ I SM   +G   + PY ASK AV+ L   +  EL
Sbjct: 117 NQTAVFLVSQAVARYMVKRQAGKIINICSMQSELGRDTITPYAASKGAVKMLTRGMCVEL 176

Query: 177 REDARNSKIKFTSIFPFMVDTGLCK 201
              AR++ I+   I P    T + K
Sbjct: 177 ---ARHN-IQVNGIAPGYFKTEMTK 197

Length = 254

>gnl|CDD|235693 PRK06077, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 135 KNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFM 194
           +  G IV I+S+AGI     L  Y A K AV  L + LA EL       KI+  +I P  
Sbjct: 131 REGGAIVNIASVAGIRPAYGLSIYGAMKAAVINLTKYLALELAP-----KIRVNAIAPGF 185

Query: 195 VDTGL 199
           V T L
Sbjct: 186 VKTKL 190

Length = 252

>gnl|CDD|226476 COG3967, DltE, Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 5/95 (5%)

Query: 105 DNDFEVLPAEIG-NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKF 163
           ++  +    EI  NL     +    LP ++ +    I+ +SS    V + +   YCA+K 
Sbjct: 98  EDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAFVPMASTPVYCATKA 157

Query: 164 AVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198
           A    + +    LRE  +++ ++   + P +VDT 
Sbjct: 158 A----IHSYTLALREQLKDTSVEVIELAPPLVDTT 188

Length = 245

>gnl|CDD|236216 PRK08277, PRK08277, D-mannonate oxidoreductase; Provisional

 Score = 40.3 bits (95), Expect = 9e-04
 Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 16/91 (17%)

Query: 105 DNDFEVLPAEIGNLKNLQI----------ILETFLP------DMMEKNRGHIVGISSMAG 148
           DN+F  L        +L            +L T LP      DM+ +  G+I+ ISSM  
Sbjct: 105 DNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGGNIINISSMNA 164

Query: 149 IVGLPNLVPYCASKFAVRGLMEALAEELRED 179
              L  +  Y A+K A+    + LA    + 
Sbjct: 165 FTPLTKVPAYSAAKAAISNFTQWLAVHFAKV 195

Length = 278

>gnl|CDD|187586 cd05325, carb_red_sniffer_like_SDR_c, carbonyl reductase sniffer-like, classical (c) SDRs

 Score = 40.0 bits (94), Expect = 9e-04
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 7/75 (9%)

Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNL---VPYCASKFAVRGLMEALAEELREDARNSK 184
           FLP +++  R  I+ ISS  G +G         Y ASK A+  L ++LA EL+ D     
Sbjct: 118 FLPLLLKGARAKIINISSRVGSIGDNTSGGWYSYRASKAALNMLTKSLAVELKRD----G 173

Query: 185 IKFTSIFPFMVDTGL 199
           I   S+ P  V T +
Sbjct: 174 ITVVSLHPGWVRTDM 188

Sniffer is an NADPH-dependent carbonyl reductase of the classical SDR family. Studies in Drosophila melanogaster implicate Sniffer in the prevention of neurodegeneration due to aging and oxidative-stress. This subgroup also includes Rhodococcus sp. AD45 IsoH, which is an NAD-dependent 1-hydroxy-2-glutathionyl-2-methyl-3-butene dehydrogenase involved in isoprene metabolism, Aspergillus nidulans StcE encoded by a gene which is part of a proposed sterigmatocystin biosynthesis gene cluster, Bacillus circulans SANK 72073 BtrF encoded by a gene found in the butirosin biosynthesis gene cluster, and Aspergillus parasiticus nor-1 involved in the biosynthesis of aflatoxins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 233

>gnl|CDD|180761 PRK06935, PRK06935, 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 20/60 (33%), Positives = 30/60 (50%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           NL ++  + +     M ++  G I+ I+SM    G   +  Y ASK  V GL +A A EL
Sbjct: 122 NLNSVYHLSQAVAKVMAKQGSGKIINIASMLSFQGGKFVPAYTASKHGVAGLTKAFANEL 181

Length = 258

>gnl|CDD|236190 PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 15/47 (31%), Positives = 21/47 (44%)

Query: 130 PDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           P    +  G IV + S A  V    +  Y ASK A+  L + +  EL
Sbjct: 120 PQFRRQRSGAIVTVGSNAAHVPRIGMAAYGASKAALTSLAKCVGLEL 166

Length = 252

>gnl|CDD|177895 PLN02253, PLN02253, xanthoxin dehydrogenase

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIF 191
           M+   +G IV + S+A  +G      Y  SK AV GL  ++A EL +      I+   + 
Sbjct: 142 MIPLKKGSIVSLCSVASAIGGLGPHAYTGSKHAVLGLTRSVAAELGKHG----IRVNCVS 197

Query: 192 PFMVDTGL 199
           P+ V T L
Sbjct: 198 PYAVPTAL 205

Length = 280

>gnl|CDD|132337 TIGR03294, FrhG, coenzyme F420 hydrogenase, subunit gamma

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 17/57 (29%)

Query: 286 VISMGSCANGGGYYHYSYSVVRGCDR-------------IIPVDIYVPGCPPTAEAL 329
           V+++G+CA  G +  YS    RG  +             +I VD+ +PGCPP+ EA+
Sbjct: 81  VVALGACAATGNFTRYS----RGGQQAQPQHESFVPITDVIDVDLAIPGCPPSPEAI 133

This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family. Length = 228

>gnl|CDD|187590 cd05329, TR_SDR_c, tropinone reductase-I and II (TR-1, and TR-II)-like, classical (c) SDRs

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 18/117 (15%)

Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
             P +     G+IV ISS+AG++ +P+  PY A+K A+  L  +LA E  +D     I+ 
Sbjct: 126 AHPLLKASGNGNIVFISSVAGVIAVPSGAPYGATKGALNQLTRSLACEWAKDN----IRV 181

Query: 188 TSIFPFMVDT----GLCKNPKIKMNRLSSLP-RGFG---------AFPVLEAFSFTT 230
            ++ P+++ T     + +  +     +   P + FG         AF  + A S+ T
Sbjct: 182 NAVAPWVIATPLVEPVIQQKENLDKVIERTPLKRFGEPEEVAALVAFLCMPAASYIT 238

This subgroup includes TR-I and TR-II; these proteins are members of the SDR family. TRs catalyze the NADPH-dependent reductions of the 3-carbonyl group of tropinone, to a beta-hydroxyl group. TR-I and TR-II produce different stereoisomers from tropinone, TR-I produces tropine (3alpha-hydroxytropane), and TR-II, produces pseudotropine (sigma-tropine, 3beta-hydroxytropane). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 251

>gnl|CDD|212496 cd11730, Tthb094_like_SDR_c, Tthb094 and related proteins, classical (c) SDRs

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 6/62 (9%)

Query: 138 GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT 197
             +V + +   +V LP L  Y A+K A+   +E   +E+R       ++ T + P  VDT
Sbjct: 116 ARLVFLGAYPELVMLPGLSAYAAAKAALEAYVEVARKEVR------GLRLTLVRPPAVDT 169

Query: 198 GL 199
           GL
Sbjct: 170 GL 171

Tthb094 from Thermus Thermophilus is a classical SDR which binds NADP. Members of this subgroup contain the YXXXK active site characteristic of SDRs. Also, an upstream Asn residue of the canonical catalytic tetrad is partially conserved in this subgroup of proteins of undetermined function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 206

>gnl|CDD|187599 cd05340, Ycik_SDR_c, Escherichia coli K-12 YCIK-like, classical (c) SDRs

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
           LP +++ + G +V  SS  G  G  N   Y  SKFA  GL + LA+E     +   ++  
Sbjct: 128 LPLLLKSDAGSLVFTSSSVGRQGRANWGAYAVSKFATEGLXQVLADEY----QQRNLRVN 183

Query: 189 SIFPFMVDTG 198
            I P    T 
Sbjct: 184 CINPGGTRTA 193

Escherichia coli K-12 YCIK and related proteins have a canonical classical SDR nucleotide-binding motif and active site tetrad. They are predicted oxoacyl-(acyl carrier protein/ACP) reductases. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 236

>gnl|CDD|235712 PRK06138, PRK06138, short chain dehydrogenase; Provisional

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
           +P M  +  G IV  +S   + G      Y ASK A+  L  A+A +   D     I+  
Sbjct: 124 IPIMQRQGGGSIVNTASQLALAGGRGRAAYVASKGAIASLTRAMALDHATD----GIRVN 179

Query: 189 SIFPFMVDT 197
           ++ P  +DT
Sbjct: 180 AVAPGTIDT 188

Length = 252

>gnl|CDD|187602 cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
            LP M E+  G IV ISS+      PNLV    ++  + GL++ L+ EL  D     +  
Sbjct: 120 VLPGMKERGWGRIVNISSLTVKEPEPNLVLSNVARAGLIGLVKTLSRELAPDG----VTV 175

Query: 188 TSIFPFMVDTG 198
            S+ P  +DT 
Sbjct: 176 NSVLPGYIDTE 186

This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 253

>gnl|CDD|213929 TIGR04316, dhbA_paeA, 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 17/47 (36%), Positives = 22/47 (46%)

Query: 130 PDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           P M  +  G IV + S A  V    +  Y ASK A+  L + L  EL
Sbjct: 119 PRMKRRRSGAIVTVGSNAANVPRMGMAAYAASKAALTMLTKCLGLEL 165

Members of this family are 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28), the third enzyme in the biosynthesis of 2,3-dihydroxybenzoic acid (DHB) from chorismate. The first two enzymes are isochorismate synthase (EC 5.4.4.2) and isochorismatase (EC 3.3.2.1). Synthesis is often followed by adenylation by the enzyme DHBA-AMP ligase (EC 2.7.7.58) to activate (DHB) for a non-ribosomal peptide synthetase. Length = 250

>gnl|CDD|235702 PRK06124, PRK06124, gluconate 5-dehydrogenase; Provisional

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 18/45 (40%), Positives = 24/45 (53%)

Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           M  +  G I+ I+S+AG V       Y A+K  + GLM ALA E 
Sbjct: 134 MKRQGYGRIIAITSIAGQVARAGDAVYPAAKQGLTGLMRALAAEF 178

Length = 256

>gnl|CDD|187597 cd05338, DHRS1_HSDL2-like_SDR_c, human dehydrogenase/reductase (SDR family) member 1 (DHRS1) and human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 18/52 (34%), Positives = 24/52 (46%)

Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRED 179
            LP M++  +GHI+ IS    +      V Y A K  +  L   LA ELR  
Sbjct: 134 ALPHMVKAGQGHILNISPPLSLRPARGDVAYAAGKAGMSRLTLGLAAELRRH 185

This subgroup includes human DHRS1 and human HSDL2 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. HSDL2 may play a part in fatty acid metabolism, as it is found in peroxisomes. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 246

>gnl|CDD|188170 TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogenase

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 15/87 (17%)

Query: 117 NLKNLQIILETFLPDMMEK-NRGHIVGISSM----AGIVGLPNLVP-YCASKFAVRGLME 170
           NLK++  + +      +++   G I+ I+SM     GI      VP Y ASK AV GL +
Sbjct: 111 NLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQGGI-----RVPSYTASKHAVAGLTK 165

Query: 171 ALAEELREDARNSKIKFTSIFPFMVDT 197
            LA E         I   +I P  + T
Sbjct: 166 LLANEWAA----KGINVNAIAPGYMAT 188

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 248

>gnl|CDD|187619 cd05361, haloalcohol_DH_SDR_c-like, haloalcohol dehalogenase, classical (c) SDRs

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 16/56 (28%), Positives = 26/56 (46%)

Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRED 179
           +L+  +  M +   G I+ I+S      L     Y  ++ A   L E+LA+EL  D
Sbjct: 111 LLQAAIAQMKKAGGGSIIFITSAVPKKPLAYNSLYGPARAAAVALAESLAKELSRD 166

Dehalogenases cleave carbon-halogen bonds. Haloalcohol dehalogenase show low sequence similarity to short-chain dehydrogenases/reductases (SDRs). Like the SDRs, haloalcohol dehalogenases have a conserved catalytic triad (Ser-Tyr-Lys/Arg), and form a Rossmann fold. However, the normal classical SDR NAD(P)-binding motif (TGXXGXG) and NAD-binding function is replaced with a halide binding site, allowing the enzyme to catalyze a dehalogenation reaction. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 242

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 4/64 (6%)

Query: 4   ITRITLSHN-KLKEIPPGLANLVNLEILTLFN-NQIETLPTSLSSLPKLRILNL-GMNRL 60
           +TR+ LS    L E+P  + NL  LE L + N   +ETLPT + +L  L  L+L G +RL
Sbjct: 780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRL 838

Query: 61  SSLP 64
            + P
Sbjct: 839 RTFP 842

syringae 6; Provisional. Length = 1153

>gnl|CDD|181044 PRK07577, PRK07577, short chain dehydrogenase; Provisional

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 14/82 (17%)

Query: 110 VLPAEIGN--LKNLQIIL-----------ETFLPDMMEKNRGHIVGISSMAGIVGLPNLV 156
            LP  +G   L  LQ +            + FL  M  + +G IV I S A I G  +  
Sbjct: 79  ALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRA-IFGALDRT 137

Query: 157 PYCASKFAVRGLMEALAEELRE 178
            Y A+K A+ G     A EL E
Sbjct: 138 SYSAAKSALVGCTRTWALELAE 159

Length = 234

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	352
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.95
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.94
KOG0444|consensus	1255		99.93
KOG0472|consensus	565		99.92
KOG0617|consensus	264		99.91
KOG0444|consensus	1255		99.91
KOG0472|consensus	565		99.91
KOG4194|consensus	873		99.88
KOG4194|consensus	873		99.85
KOG1687|consensus	168		99.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.83
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.8
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.79
KOG0618|consensus	1081		99.78
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
KOG0532|consensus	722		99.72
KOG4237|consensus	498		99.71
KOG0617|consensus	264		99.7
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.7
KOG0618|consensus	1081		99.67
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.66
KOG0532|consensus	722		99.61
COG0377	194	NuoB NADH:ubiquinone oxidoreductase 20 kD subunit	99.56
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.52
KOG4237|consensus	498		99.51
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.43
PLN03150	623	hypothetical protein; Provisional	99.38
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.38
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.36
PRK14818	173	NADH dehydrogenase subunit B; Provisional	99.27
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.27
KOG1259|consensus	490		99.24
PLN03150	623	hypothetical protein; Provisional	99.2
PRK14813	189	NADH dehydrogenase subunit B; Provisional	99.15
COG3260	148	Ni,Fe-hydrogenase III small subunit [Energy produc	99.12
PRK06411	183	NADH dehydrogenase subunit B; Validated	99.06
PRK14816	182	NADH dehydrogenase subunit B; Provisional	99.04
PRK14815	183	NADH dehydrogenase subunit B; Provisional	99.04
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.04
CHL00023	225	ndhK NADH dehydrogenase subunit K	99.03
KOG0531|consensus	414		99.03
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.03
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.97
TIGR01957	145	nuoB_fam NADH-quinone oxidoreductase, B subunit. T	98.96
PRK14817	181	NADH dehydrogenase subunit B; Provisional	98.96
KOG3207|consensus	505		98.93
PRK14820	180	NADH dehydrogenase subunit B; Provisional	98.91
KOG3207|consensus	505		98.89
KOG1259|consensus	490		98.89
KOG4579|consensus	177		98.83
PRK14819	264	NADH dehydrogenase subunit B; Provisional	98.83
PRK14814	186	NADH dehydrogenase subunit B; Provisional	98.8
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.66
KOG4658|consensus	889		98.66
KOG0531|consensus	414		98.61
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.59
KOG1859|consensus	1096		98.54
KOG4579|consensus	177		98.53
PRK13292	788	trifunctional NADH dehydrogenase I subunit B/C/D;	98.5
KOG1859|consensus	1096		98.45
KOG1909|consensus	382		98.44
KOG4658|consensus	889		98.4
KOG2982|consensus	418		98.25
PRK15386	426	type III secretion protein GogB; Provisional	97.95
KOG1644|consensus	233		97.92
KOG1644|consensus	233		97.59
PRK15386	426	type III secretion protein GogB; Provisional	97.58
TIGR03294	228	FrhG coenzyme F420 hydrogenase, subunit gamma. Thi	97.44
PF01058	131	Oxidored_q6: NADH ubiquinone oxidoreductase, 20 Kd	97.41
KOG3665|consensus	699		97.39
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.33
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.3
KOG2982|consensus	418		97.29
KOG3665|consensus	699		97.26
KOG0473|consensus	326		97.14
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.12
COG1941	247	FrhG Coenzyme F420-reducing hydrogenase, gamma sub	97.07
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.06
KOG1909|consensus	382		96.92
KOG2120|consensus	419		96.84
KOG2739|consensus	260		96.79
KOG2739|consensus	260		96.49
KOG0473|consensus	326		96.46
KOG2120|consensus	419		96.43
KOG1201|consensus	300		96.38
KOG2123|consensus	388		96.31
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.27
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.26
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.16
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.0
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.11
smart00370	26	LRR Leucine-rich repeats, outliers.	95.11
COG0300	265	DltE Short-chain dehydrogenases of various substra	94.99
KOG2123|consensus	388		94.79
PRK10468	371	hydrogenase 2 small subunit; Provisional	94.71
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.59
smart00370	26	LRR Leucine-rich repeats, outliers.	94.59
TIGR00391	365	hydA hydrogenase (NiFe) small subunit (hydA). Call	93.99
KOG1205|consensus	282		93.59
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	92.88
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	90.9
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	88.34
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	87.3
KOG1014|consensus	312		86.94
PRK08339	263	short chain dehydrogenase; Provisional	86.4
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	85.84
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	83.35
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	82.77
KOG4169|consensus	261		82.32
KOG4308|consensus	478		81.55
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	81.54
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	80.19
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	80.01

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.95  E-value=1.2e-28  Score=257.55  Aligned_cols=303  Identities=24%  Similarity=0.339  Sum_probs=179.6

Q ss_pred             CCCccEEEeeCCcCc-ccCccccCCCCCCEEEccCCcCc-ccccccCCCCCCcEEEccCCCCC-ccccccCCCCCCCEEE
Q psy5270           1 MLYITRITLSHNKLK-EIPPGLANLVNLEILTLFNNQIE-TLPTSLSSLPKLRILNLGMNRLS-SLPRGFGAFPVLEVLD   77 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~-~ip~~l~~l~~L~~L~L~~N~l~-~ip~~l~~L~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~   77 (352)
                      +++|++|++++|.++ .+|.+++++++|++|++++|.++ .+|..+.++++|+.|++++|.++ .+|..++.+++|+.|+
T Consensus       259 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  338 (968)
T PLN00113        259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQ  338 (968)
T ss_pred             CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEE
Confidence            456777888888777 67777777778888888888777 66777777777777777777777 5677777777777777


Q ss_pred             ccCCCCCCCCCCCccccCccCcEEEccCCccc-cchhhccCcccHHHHHHhc------chhhHhhc-CceEeecc-----
Q psy5270          78 LTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQIILETF------LPDMMEKN-RGHIVGIS-----  144 (352)
Q Consensus        78 Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~-~ip~~~~nl~~L~~L~l~~------~p~~~~~~-~g~i~~is-----  144 (352)
                      +++|++++ .+|..++.+++|+.|++++|+++ .+|.+++.+.+++.++++.      .|...... ......+.     
T Consensus       339 L~~n~l~~-~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~  417 (968)
T PLN00113        339 LWSNKFSG-EIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS  417 (968)
T ss_pred             CcCCCCcC-cCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEee
Confidence            77777776 67777777777777777777776 5666666655555554432      11111100 00111110     


Q ss_pred             --ccccccCCCCccccccchhhhhhhhHHhHHHH-------------------------HHHHhcCCceeecccCccc-c
Q psy5270         145 --SMAGIVGLPNLVPYCASKFAVRGLMEALAEEL-------------------------REDARNSKIKFTSIFPFMV-D  196 (352)
Q Consensus       145 --s~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l-------------------------~~~~~~~~n~~~g~~P~~~-~  196 (352)
                        ....+..++.+.....+.+.+.+........+                         ...+++++|++++..|..+ .
T Consensus       418 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~  497 (968)
T PLN00113        418 GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGS  497 (968)
T ss_pred             eECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhh
Confidence              01122333444334444443333221111100                         0123344444444444322 2


Q ss_pred             cCCccCcccccccCC-CcccCCCCCcccchhhhhhhhhhccccccccCCCchhhhhHHhHhhhCCCCcce-ecchhhhcc
Q psy5270         197 TGLCKNPKIKMNRLS-SLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNL  274 (352)
Q Consensus       197 ~~~l~~l~l~~n~l~-~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~-~iP~~l~~l  274 (352)
                      ...+..++++.|+++ .+|..++.+++|      +.|++++|.++| .+|..+..+++|++|||++|+++ .+|..++++
T Consensus       498 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L------~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  570 (968)
T PLN00113        498 LSELMQLKLSENKLSGEIPDELSSCKKL------VSLDLSHNQLSG-QIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNV  570 (968)
T ss_pred             hhccCEEECcCCcceeeCChHHcCccCC------CEEECCCCcccc-cCChhHhCcccCCEEECCCCcccccCChhHhcC
Confidence            334455555556555 555555555555      678888888887 78888888888888888888888 788888888


Q ss_pred             cccccccCCceeeeccccccCCcccccccccccCCCcc
Q psy5270         275 KNLQIMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRI  312 (352)
Q Consensus       275 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (352)
                      ++|+.+....+.. .+.++..+.+..+....+.|.+.+
T Consensus       571 ~~L~~l~ls~N~l-~~~~p~~~~~~~~~~~~~~~n~~l  607 (968)
T PLN00113        571 ESLVQVNISHNHL-HGSLPSTGAFLAINASAVAGNIDL  607 (968)
T ss_pred             cccCEEeccCCcc-eeeCCCcchhcccChhhhcCCccc
Confidence            8888775555443 233333333333334444444433

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.94  E-value=2.1e-28  Score=255.88  Aligned_cols=125  Identities=34%  Similarity=0.533  Sum_probs=72.0

Q ss_pred             CCccEEEeeCCcCc-ccCccccCCCCCCEEEccCCcCc-ccccccCCCCCCcEEEccCCCCC-ccccccCCCCCCCEEEc
Q psy5270           2 LYITRITLSHNKLK-EIPPGLANLVNLEILTLFNNQIE-TLPTSLSSLPKLRILNLGMNRLS-SLPRGFGAFPVLEVLDL   78 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~-~ip~~l~~l~~L~~L~L~~N~l~-~ip~~l~~L~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L   78 (352)
                      ++|++|||++|.++ .+|..++++++|++|+|++|.+. .+|..++++++|++|++++|+++ .+|..++++++|+.|++
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  219 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL  219 (968)
T ss_pred             CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence            34555555555555 45555555556666666666554 45555556666666666666555 45555556666666666


Q ss_pred             cCCCCCCCCCCCccccCccCcEEEccCCccc-cchhhccCcccHHHHHHh
Q psy5270          79 TYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQIILET  127 (352)
Q Consensus        79 s~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~-~ip~~~~nl~~L~~L~l~  127 (352)
                      ++|++++ .+|..++++++|++|++++|+++ .+|..++++++|+.|+++
T Consensus       220 ~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  268 (968)
T PLN00113        220 GYNNLSG-EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY  268 (968)
T ss_pred             cCCccCC-cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECc
Confidence            6666555 45555666666666666666555 455555555555555444

>KOG0444|consensus

Probab=99.93  E-value=1.2e-27  Score=222.88  Aligned_cols=262  Identities=25%  Similarity=0.378  Sum_probs=144.2

Q ss_pred             ccEEEeeCCcCcccCccccCCCCCCEEEccCCcCc--ccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCC
Q psy5270           4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIE--TLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYN   81 (352)
Q Consensus         4 L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~--~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N   81 (352)
                      |+.|.+++|++..+-.++..++.|+.+++..|++.  .||+.+..|..|++|||++|++.++|..+..-+++-+|+||+|
T Consensus        57 LEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N  136 (1255)
T KOG0444|consen   57 LEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN  136 (1255)
T ss_pred             hhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccC
Confidence            33344444444444334444444444444444443  4455555555555555555555555555555555555555555


Q ss_pred             CCCCCCCCCc-cccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCcccccc
Q psy5270          82 NLNEQSLPGN-FFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA  160 (352)
Q Consensus        82 ~l~g~~~p~~-~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~  160 (352)
                      ++.  .||.. |.+++.|-+|||++|++..+|+.+..+..|+.|.+++.|....+..          .+..++.+..+..
T Consensus       137 ~Ie--tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLr----------QLPsmtsL~vLhm  204 (1255)
T KOG0444|consen  137 NIE--TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLR----------QLPSMTSLSVLHM  204 (1255)
T ss_pred             ccc--cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHh----------cCccchhhhhhhc
Confidence            553  34543 3355556666666666666666666666666666665554332221          1111111111111


Q ss_pred             chh--hhhhhhHHhHHHH--HHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhcc
Q psy5270         161 SKF--AVRGLMEALAEEL--REDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTY  236 (352)
Q Consensus       161 s~~--~l~~~~~~l~~~l--~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~  236 (352)
                      +..  .+..+..++ ..+  ..+++++.|.+.-..........+..++|+.|+++++....+...++      ++|+||+
T Consensus       205 s~TqRTl~N~Ptsl-d~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~l------EtLNlSr  277 (1255)
T KOG0444|consen  205 SNTQRTLDNIPTSL-DDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENL------ETLNLSR  277 (1255)
T ss_pred             ccccchhhcCCCch-hhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhh------hhhcccc
Confidence            110  000111111 111  12344555555443333334455666666666666655555444444      7999999


Q ss_pred             ccccccCCCchhhhhHHhHhhhCCCCcce--ecchhhhcccccccccCCcee
Q psy5270         237 NNLNEQSLPGNFFMLETLRALYLGDNDFE--VLPAEIGNLKNLQIMLEPRWV  286 (352)
Q Consensus       237 N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~--~iP~~l~~l~~L~~l~~~~~~  286 (352)
                      |+++  .+|+.+++|+.|+.|++.+|+++  .||++||+|.+|+++-..++.
T Consensus       278 NQLt--~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~  327 (1255)
T KOG0444|consen  278 NQLT--VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK  327 (1255)
T ss_pred             chhc--cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc
Confidence            9998  59999999999999999999998  899999999999998555543

>KOG0472|consensus

Probab=99.92  E-value=7.9e-27  Score=207.28  Aligned_cols=272  Identities=28%  Similarity=0.372  Sum_probs=176.4

Q ss_pred             CCCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccC-CCCCCCEEEcc
Q psy5270           1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFG-AFPVLEVLDLT   79 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~-~l~~L~~L~Ls   79 (352)
                      |++|+.||...|-++.+|+++|.|.+|..|||..|.+..+| +|.+++.|..|+++.|+++.+|.+.+ .+.++.+|||.
T Consensus       182 m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLR  260 (565)
T KOG0472|consen  182 MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLR  260 (565)
T ss_pred             HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecc
Confidence            45678888888888888888888888888888888888888 78888888888888888888888866 79999999999


Q ss_pred             CCCCCCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhh--------------c---------
Q psy5270          80 YNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEK--------------N---------  136 (352)
Q Consensus        80 ~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~--------------~---------  136 (352)
                      .|+++.  +|++++-+++|++||+++|.++.+|.++||+ .|..+.+...|-..-+              .         
T Consensus       261 dNklke--~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dgl  337 (565)
T KOG0472|consen  261 DNKLKE--VPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGL  337 (565)
T ss_pred             cccccc--CchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCC
Confidence            999984  8999999999999999999999999999998 7777655543311000              0         


Q ss_pred             ----CceEeecc----c----------------cccccCCCCc----------cccccchhhhhhhhHHhHH--HHHHHH
Q psy5270         137 ----RGHIVGIS----S----------------MAGIVGLPNL----------VPYCASKFAVRGLMEALAE--ELREDA  180 (352)
Q Consensus       137 ----~g~i~~is----s----------------~~~l~~lp~l----------~~~~~s~~~l~~~~~~l~~--~l~~~~  180 (352)
                          .|......    +                -..+...|..          .....+++++..+.+.+..  ++...+
T Consensus       338 S~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l  417 (565)
T KOG0472|consen  338 SQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDL  417 (565)
T ss_pred             CCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHH
Confidence                00000000    0                0000011110          0112223333333222221  222333


Q ss_pred             hcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhccccccccCCCchhhhhHHhHhhhCC
Q psy5270         181 RNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLG  260 (352)
Q Consensus       181 ~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls  260 (352)
                      .+++|.+..+.-.....+.++.+++++|-+..+|.+++.+..|      +.||+|+|.|.  .+|.++..+..++++-.+
T Consensus       418 ~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~L------q~LnlS~NrFr--~lP~~~y~lq~lEtllas  489 (565)
T KOG0472|consen  418 VLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRL------QTLNLSFNRFR--MLPECLYELQTLETLLAS  489 (565)
T ss_pred             HhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhh------heecccccccc--cchHHHhhHHHHHHHHhc
Confidence            4444444332222224456677788888888888888877776      57777777775  467666666666666666


Q ss_pred             CCcceecchh-hhcccccccccCCc
Q psy5270         261 DNDFEVLPAE-IGNLKNLQIMLEPR  284 (352)
Q Consensus       261 ~N~l~~iP~~-l~~l~~L~~l~~~~  284 (352)
                      +|++..+|++ ++++++|..++.+.
T Consensus       490 ~nqi~~vd~~~l~nm~nL~tLDL~n  514 (565)
T KOG0472|consen  490 NNQIGSVDPSGLKNMRNLTTLDLQN  514 (565)
T ss_pred             cccccccChHHhhhhhhcceeccCC
Confidence            6666655444 66666666664443

>KOG0617|consensus

Probab=99.91  E-value=1.4e-26  Score=183.94  Aligned_cols=120  Identities=75%  Similarity=1.191  Sum_probs=73.6

Q ss_pred             CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCC
Q psy5270           2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYN   81 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N   81 (352)
                      +.+++|.||+|+++.+|+.++.+.+|++|++++|+++++|.+++.|++|++|+++-|++..+|..||.++.|++|||.+|
T Consensus        33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltyn  112 (264)
T KOG0617|consen   33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYN  112 (264)
T ss_pred             hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccc
Confidence            34555666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCCCCCCCCccccCccCcEEEccCCccccchhhccCcccH
Q psy5270          82 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL  121 (352)
Q Consensus        82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L  121 (352)
                      ++++..+|..|..++.|+.|++++|.|.-+|+.+|++++|
T Consensus       113 nl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~l  152 (264)
T KOG0617|consen  113 NLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNL  152 (264)
T ss_pred             ccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcce
Confidence            6665555655555555555555555555555555544443

>KOG0444|consensus

Probab=99.91  E-value=1.2e-25  Score=209.47  Aligned_cols=277  Identities=23%  Similarity=0.299  Sum_probs=200.3

Q ss_pred             CCCccEEEeeCCcCc--ccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEE
Q psy5270           1 MLYITRITLSHNKLK--EIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLD   77 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~--~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~   77 (352)
                      +++|+.+++.+|++.  .||+++..+..|..|||++|++.++|..+..-+++-+|+|++|++.+||.. |-+++.|-+||
T Consensus        77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLD  156 (1255)
T KOG0444|consen   77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLD  156 (1255)
T ss_pred             chhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhc
Confidence            467889999999996  899999999999999999999999999999999999999999999999987 67899999999


Q ss_pred             ccCCCCCCCCCCCccccCccCcEEEccCCccccc-hhhccCcccHHHHHHhc-------chhhHhhcC-ceEeecccccc
Q psy5270          78 LTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIGNLKNLQIILETF-------LPDMMEKNR-GHIVGISSMAG  148 (352)
Q Consensus        78 Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~i-p~~~~nl~~L~~L~l~~-------~p~~~~~~~-g~i~~iss~~~  148 (352)
                      ||+|++.  .+|+.+..+..|+.|+|++|.+... -..+..|++|++|.++.       +|.-+.... ..-+++ |.+.
T Consensus       157 LS~NrLe--~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDl-S~N~  233 (1255)
T KOG0444|consen  157 LSNNRLE--MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL-SENN  233 (1255)
T ss_pred             cccchhh--hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccc-cccC
Confidence            9999996  5899999999999999999988622 12444577777776654       221111100 000111 1111


Q ss_pred             c-------cCCCCccccccchhhhhhhhHHhH-HHHHHHHhcCCceeecccCcccccCCccCcccccccCC--CcccCCC
Q psy5270         149 I-------VGLPNLVPYCASKFAVRGLMEALA-EELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLS--SLPRGFG  218 (352)
Q Consensus       149 l-------~~lp~l~~~~~s~~~l~~~~~~l~-~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~--~ip~~~~  218 (352)
                      +       ..++++..+.++.+.+..+.-... .+-.+.+.++.|+++........++.++.+.+.+|+++  .||.+||
T Consensus       234 Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIG  313 (1255)
T KOG0444|consen  234 LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIG  313 (1255)
T ss_pred             CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchh
Confidence            1       123333344444444432211100 01123455666777665444445666677777778777  7888888


Q ss_pred             CCcccchhhhhhhhhhccccccccCCCchhhhhHHhHhhhCCCCcceecchhhhcccccccccCCceeee
Q psy5270         219 AFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIMLEPRWVIS  288 (352)
Q Consensus       219 ~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP~~l~~l~~L~~l~~~~~~~~  288 (352)
                      .+..|      +++..++|++.  -.|+.++.+..|+.|.|++|++-++|..|--|+.|++|+...+|-.
T Consensus       314 KL~~L------evf~aanN~LE--lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  314 KLIQL------EVFHAANNKLE--LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             hhhhh------HHHHhhccccc--cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCc
Confidence            88777      68888888885  5899999999999999999999999999988888888865555443

>KOG0472|consensus

Probab=99.91  E-value=9.6e-27  Score=206.74  Aligned_cols=256  Identities=28%  Similarity=0.394  Sum_probs=171.2

Q ss_pred             ccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCCC
Q psy5270           4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNL   83 (352)
Q Consensus         4 L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l   83 (352)
                      ++.+++++|.++.+-+++.++..|.+|++.+|+++++|++++.+.+++.++.++|+++.+|+.++.+.+|+.++.++|.+
T Consensus        47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~  126 (565)
T KOG0472|consen   47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNEL  126 (565)
T ss_pred             hhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccce
Confidence            55677788887777777777778888888888888888888888888888888888888888888888888888888887


Q ss_pred             CCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchh
Q psy5270          84 NEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKF  163 (352)
Q Consensus        84 ~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~  163 (352)
                      ..  +|++++.+..|+.++..+|+++.+|+.++++.++..+++.+..         +....  .....+..+.-.++.++
T Consensus       127 ~e--l~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~---------l~~l~--~~~i~m~~L~~ld~~~N  193 (565)
T KOG0472|consen  127 KE--LPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK---------LKALP--ENHIAMKRLKHLDCNSN  193 (565)
T ss_pred             ee--cCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc---------hhhCC--HHHHHHHHHHhcccchh
Confidence            63  7778888888888888888888888888877777777655310         00000  00000000011111111


Q ss_pred             hhhhhhHHhHH-HHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCC-CCcccchhhhhhhhhhccccccc
Q psy5270         164 AVRGLMEALAE-ELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFG-AFPVLEAFSFTTILDLTYNNLNE  241 (352)
Q Consensus       164 ~l~~~~~~l~~-~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~-~l~~L~~~~~L~~L~ls~N~l~g  241 (352)
                      .+..+.+.+.. +-...+++..|++... |.+-....+..++++.|++..+|++.+ ++..+      -+|||+.|++. 
T Consensus       194 ~L~tlP~~lg~l~~L~~LyL~~Nki~~l-Pef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l------~vLDLRdNklk-  265 (565)
T KOG0472|consen  194 LLETLPPELGGLESLELLYLRRNKIRFL-PEFPGCSLLKELHVGENQIEMLPAEHLKHLNSL------LVLDLRDNKLK-  265 (565)
T ss_pred             hhhcCChhhcchhhhHHHHhhhcccccC-CCCCccHHHHHHHhcccHHHhhHHHHhcccccc------eeeeccccccc-
Confidence            11111111110 0012233334444332 333344455666777888877887765 55555      69999999998 


Q ss_pred             cCCCchhhhhHHhHhhhCCCCcceecchhhhcccccccccC
Q psy5270         242 QSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIMLE  282 (352)
Q Consensus       242 ~~iP~~~~~l~~L~~L~Ls~N~l~~iP~~l~~l~~L~~l~~  282 (352)
                       +.|+.++.+.+|++||+|+|.++.+|.++|++ +|.++-.
T Consensus       266 -e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~l  304 (565)
T KOG0472|consen  266 -EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLAL  304 (565)
T ss_pred             -cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhh
Confidence             58999999999999999999999999999999 8887733

>KOG4194|consensus

Probab=99.88  E-value=6.7e-24  Score=196.52  Aligned_cols=265  Identities=26%  Similarity=0.303  Sum_probs=158.7

Q ss_pred             CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEcc
Q psy5270           2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDLT   79 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls   79 (352)
                      ++|+.+.+.+|.++.||...+...+|+.|+|.+|.++++ .+++.-++.|+.|||+.|.+++||. +|..-.+++.|+|+
T Consensus       102 ~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La  181 (873)
T KOG4194|consen  102 PNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLA  181 (873)
T ss_pred             CcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeec
Confidence            455555666666666665544444566666666666544 3355666667777777777776654 35555678888888


Q ss_pred             CCCCCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhcchhhHhhcCceEeeccccccccCC------
Q psy5270          80 YNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGL------  152 (352)
Q Consensus        80 ~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~l------  152 (352)
                      +|+++. .--..|.++.+|..|.|+.|+++.+|. .|.++..|+.|++..       +..+++....+.++..+      
T Consensus       182 ~N~It~-l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr-------N~irive~ltFqgL~Sl~nlklq  253 (873)
T KOG4194|consen  182 SNRITT-LETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR-------NRIRIVEGLTFQGLPSLQNLKLQ  253 (873)
T ss_pred             cccccc-cccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc-------cceeeehhhhhcCchhhhhhhhh
Confidence            888875 234567888888888888888888776 677788888887754       22233322222222221      


Q ss_pred             ---------------CCccccccchhhhhhhhHHhHHHHH--HHHhcCCceeecccCc-ccccCCccCcccccccCCCcc
Q psy5270         153 ---------------PNLVPYCASKFAVRGLMEALAEELR--EDARNSKIKFTSIFPF-MVDTGLCKNPKIKMNRLSSLP  214 (352)
Q Consensus       153 ---------------p~l~~~~~s~~~l~~~~~~l~~~l~--~~~~~~~n~~~g~~P~-~~~~~~l~~l~l~~n~l~~ip  214 (352)
                                     ..+....+..+.+....+.+...+.  +.++++.|.+.-+.+. |--+..++.++|++|+++.+|
T Consensus       254 rN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~  333 (873)
T KOG4194|consen  254 RNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLD  333 (873)
T ss_pred             hcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCC
Confidence                           1122222333333333333332222  4555666666655443 223455666777777777776


Q ss_pred             cCCCCCcccchhhhhhhhhhccccccccCCCchhhhhHHhHhhhCCCCcce-ecchh---hhcccccccc
Q psy5270         215 RGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAE---IGNLKNLQIM  280 (352)
Q Consensus       215 ~~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~-~iP~~---l~~l~~L~~l  280 (352)
                      ++     ++..+..|+.|+|++|.++. .--..|..+++|++|||++|.++ .|.+.   +..|++|+.|
T Consensus       334 ~~-----sf~~L~~Le~LnLs~Nsi~~-l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL  397 (873)
T KOG4194|consen  334 EG-----SFRVLSQLEELNLSHNSIDH-LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL  397 (873)
T ss_pred             hh-----HHHHHHHhhhhcccccchHH-HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence            54     34444455778888888774 23445777788888888888887 66433   5556666666

>KOG4194|consensus

Probab=99.85  E-value=3.1e-22  Score=185.56  Aligned_cols=310  Identities=21%  Similarity=0.240  Sum_probs=213.7

Q ss_pred             CccEEEeeCCcCcccCc-cccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEcc
Q psy5270           3 YITRITLSHNKLKEIPP-GLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDLT   79 (352)
Q Consensus         3 ~L~~L~Ls~N~l~~ip~-~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls   79 (352)
                      +|+.|+|.+|.|+++.. ++.-++.|+.|||+.|.+++||. +|..=.++++|+|++|.++++-. .|..+.+|.+|.|+
T Consensus       126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs  205 (873)
T KOG4194|consen  126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS  205 (873)
T ss_pred             ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecc
Confidence            57888888888887764 57778888888888888887764 56666678888888888887754 47888888888888


Q ss_pred             CCCCCCCCCCC-ccccCccCcEEEccCCccccc-hhhccCcccHHHHHHhcchhhHhhcCceE--------eec------
Q psy5270          80 YNNLNEQSLPG-NFFMLETLRALYLGDNDFEVL-PAEIGNLKNLQIILETFLPDMMEKNRGHI--------VGI------  143 (352)
Q Consensus        80 ~N~l~g~~~p~-~~~~l~~L~~L~l~~N~l~~i-p~~~~nl~~L~~L~l~~~p~~~~~~~g~i--------~~i------  143 (352)
                      .|+++.  +|. .|.+|++|+.|+|..|++..+ -..|..+.+|+.+.+..+.- .+-.+|..        .++      
T Consensus       206 rNritt--Lp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I-~kL~DG~Fy~l~kme~l~L~~N~l~  282 (873)
T KOG4194|consen  206 RNRITT--LPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI-SKLDDGAFYGLEKMEHLNLETNRLQ  282 (873)
T ss_pred             cCcccc--cCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCc-ccccCcceeeecccceeecccchhh
Confidence            888885  454 666688888888888888754 33666777777765543100 00001111        111      


Q ss_pred             -cccccccCCCCccccccchhhhhhhhHHhHHHH--HHHHhcCCceeecccCccc-ccCCccCcccccccCCCcccCCCC
Q psy5270         144 -SSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL--REDARNSKIKFTSIFPFMV-DTGLCKNPKIKMNRLSSLPRGFGA  219 (352)
Q Consensus       144 -ss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l--~~~~~~~~n~~~g~~P~~~-~~~~l~~l~l~~n~l~~ip~~~~~  219 (352)
                       -.-+++-+++.+..+..+.+++..+...-.+.-  ...++++.|+++..-++.+ .+..++.+.|+.|+++.|-+.   
T Consensus       283 ~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~---  359 (873)
T KOG4194|consen  283 AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEG---  359 (873)
T ss_pred             hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhh---
Confidence             012345566777777777777765432211111  1456788999988777655 456788899999999877654   


Q ss_pred             CcccchhhhhhhhhhccccccccCCCc---hhhhhHHhHhhhCCCCcceecchh-hhcccccccccCCceeeeccccccC
Q psy5270         220 FPVLEAFSFTTILDLTYNNLNEQSLPG---NFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQIMLEPRWVISMGSCANG  295 (352)
Q Consensus       220 l~~L~~~~~L~~L~ls~N~l~g~~iP~---~~~~l~~L~~L~Ls~N~l~~iP~~-l~~l~~L~~l~~~~~~~~~~~~~~~  295 (352)
                        .+..+.+|+.|||++|.+++ .|-+   .|..|++|+.|+|.+|++..||.. |..+..||.|+.+++++....-.  
T Consensus       360 --af~~lssL~~LdLr~N~ls~-~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~n--  434 (873)
T KOG4194|consen  360 --AFVGLSSLHKLDLRSNELSW-CIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPN--  434 (873)
T ss_pred             --HHHHhhhhhhhcCcCCeEEE-EEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccc--
Confidence              23334455899999999998 5543   477899999999999999999865 99999999999888888655433  


Q ss_pred             CcccccccccccCC--Cccc-ccceecCCCCCCHHHHHHHHHHHHH
Q psy5270         296 GGYYHYSYSVVRGC--DRII-PVDIYVPGCPPTAEALMYGILQLQK  338 (352)
Q Consensus       296 ~~~~~~~~~~~~~~--~~~~-~~~~~~~gcpp~~~~~~~~~~~~~~  338 (352)
                               .|..+  ++++ ..+.+++.|      -++++.|-+.
T Consensus       435 ---------AFe~m~Lk~Lv~nSssflCDC------ql~Wl~qWl~  465 (873)
T KOG4194|consen  435 ---------AFEPMELKELVMNSSSFLCDC------QLKWLAQWLY  465 (873)
T ss_pred             ---------ccccchhhhhhhcccceEEec------cHHHHHHHHH
Confidence                     23322  2222 455677778      3456655443

>KOG1687|consensus

Probab=99.83  E-value=4.8e-21  Score=143.45  Aligned_cols=75  Identities=87%  Similarity=1.573  Sum_probs=73.3

Q ss_pred             ccccCCceeeeccccccCCcccccccccccCCCcccccceecCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhhhC
Q psy5270         278 QIMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQSWYRR  352 (352)
Q Consensus       278 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gcpp~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (352)
                      +.+.+++|.++.|.|.+++|+|+++|..+.|||+++|+|+++|||||+++|+++|++|+++|++|++.+|-|||+
T Consensus        94 dQMPEpr~VisMGsCangGGyyhysYSvvRGcDriiPVDiYvPGCPPtaEAllygilqLqkKi~R~r~~q~wyr~  168 (168)
T KOG1687|consen   94 DQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALLYGILQLQKKIKRIRPLQFWYRK  168 (168)
T ss_pred             hhCCCCeeEEEecccccCCceEEEEehhhccccceeeeeeecCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhcC
Confidence            677899999999999999999999999999999999999999999999999999999999999999999999996

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.83  E-value=2.1e-20  Score=186.22  Aligned_cols=230  Identities=25%  Similarity=0.379  Sum_probs=139.1

Q ss_pred             CccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCC
Q psy5270           3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNN   82 (352)
Q Consensus         3 ~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~   82 (352)
                      .|+.|+|++|+|+.+|..+.  ++|++|++++|+|+.+|..+.  .+|+.|+|++|+++.||..+.  ++|+.|++++|+
T Consensus       200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~  273 (754)
T PRK15370        200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNK  273 (754)
T ss_pred             CCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCc
Confidence            45566666666666665543  356666666666666665443  256666666666666666543  356777777777


Q ss_pred             CCCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccch
Q psy5270          83 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASK  162 (352)
Q Consensus        83 l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~  162 (352)
                      ++.  +|..+.  .+|+.|++++|+|+.+|..+.  .+|+.|+++.+                  .+..+|...      
T Consensus       274 L~~--LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N------------------~Lt~LP~~l------  323 (754)
T PRK15370        274 ISC--LPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSN------------------SLTALPETL------  323 (754)
T ss_pred             cCc--cccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCC------------------ccccCCccc------
Confidence            663  566553  367777777777776665443  25555555431                  000111100      


Q ss_pred             hhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhcccccccc
Q psy5270         163 FAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQ  242 (352)
Q Consensus       163 ~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~  242 (352)
                                ... ...+.+++|.++++ |..+. ..++.+++++|+++.+|..+.  +.|      +.|++++|+|+  
T Consensus       324 ----------~~s-L~~L~Ls~N~Lt~L-P~~l~-~sL~~L~Ls~N~L~~LP~~lp--~~L------~~LdLs~N~Lt--  380 (754)
T PRK15370        324 ----------PPG-LKTLEAGENALTSL-PASLP-PELQVLDVSKNQITVLPETLP--PTI------TTLDVSRNALT--  380 (754)
T ss_pred             ----------ccc-ceeccccCCccccC-Chhhc-CcccEEECCCCCCCcCChhhc--CCc------CEEECCCCcCC--
Confidence                      000 01233455666553 33222 467788899999988887553  344      78999999998  


Q ss_pred             CCCchhhhhHHhHhhhCCCCcceecchhhhc----ccccccccCCceeeeccccc
Q psy5270         243 SLPGNFFMLETLRALYLGDNDFEVLPAEIGN----LKNLQIMLEPRWVISMGSCA  293 (352)
Q Consensus       243 ~iP~~~~~l~~L~~L~Ls~N~l~~iP~~l~~----l~~L~~l~~~~~~~~~~~~~  293 (352)
                      .+|..+.  .+|+.|++++|+|+.+|.++.+    ++.+..+....+++......
T Consensus       381 ~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~  433 (754)
T PRK15370        381 NLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSERTIQ  433 (754)
T ss_pred             CCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccHHHHH
Confidence            4788765  4799999999999987776544    45666666666666544433

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.80  E-value=1.1e-19  Score=180.43  Aligned_cols=238  Identities=26%  Similarity=0.280  Sum_probs=132.0

Q ss_pred             ccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCCC
Q psy5270           4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNL   83 (352)
Q Consensus         4 L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l   83 (352)
                      -..||+++|.|+++|+.+..  +|+.|++++|+++.+|..   +++|++|++++|+++.+|...   ++|+.|++++|.+
T Consensus       203 ~~~LdLs~~~LtsLP~~l~~--~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~lp---~sL~~L~Ls~N~L  274 (788)
T PRK15387        203 NAVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVLP---PGLLELSIFSNPL  274 (788)
T ss_pred             CcEEEcCCCCCCcCCcchhc--CCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCcc---cccceeeccCCch
Confidence            35678888888888887753  678888888888777753   467788888888877776432   3444555555544


Q ss_pred             CCCCCCCccc-----------------cCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeecccc
Q psy5270          84 NEQSLPGNFF-----------------MLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSM  146 (352)
Q Consensus        84 ~g~~~p~~~~-----------------~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~  146 (352)
                      +.  +|..+.                 ..++|++|++++|+++.+|....+   |..|.+++         ..+.     
T Consensus       275 ~~--Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~Lp~lp~~---L~~L~Ls~---------N~L~-----  335 (788)
T PRK15387        275 TH--LPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSE---LCKLWAYN---------NQLT-----  335 (788)
T ss_pred             hh--hhhchhhcCEEECcCCccccccccccccceeECCCCccccCCCCccc---cccccccc---------Cccc-----
Confidence            42  332110                 124555666666666555442222   22222221         0000     


Q ss_pred             ccccCCC-CccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccch
Q psy5270         147 AGIVGLP-NLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEA  225 (352)
Q Consensus       147 ~~l~~lp-~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~  225 (352)
                       .+..+| .+..+..+.+.+..+.. .+..+ ..+.+++|++++ +|..  ...+..+++++|+++.+|....   .|  
T Consensus       336 -~LP~lp~~Lq~LdLS~N~Ls~LP~-lp~~L-~~L~Ls~N~L~~-LP~l--~~~L~~LdLs~N~Lt~LP~l~s---~L--  404 (788)
T PRK15387        336 -SLPTLPSGLQELSVSDNQLASLPT-LPSEL-YKLWAYNNRLTS-LPAL--PSGLKELIVSGNRLTSLPVLPS---EL--  404 (788)
T ss_pred             -cccccccccceEecCCCccCCCCC-CCccc-ceehhhcccccc-Cccc--ccccceEEecCCcccCCCCccc---CC--
Confidence             011111 22333333333333211 11111 123344555554 2322  1345667777777777765432   23  


Q ss_pred             hhhhhhhhhccccccccCCCchhhhhHHhHhhhCCCCcceecchhhhcccccccccCCceeee
Q psy5270         226 FSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIMLEPRWVIS  288 (352)
Q Consensus       226 ~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP~~l~~l~~L~~l~~~~~~~~  288 (352)
                          +.|++++|++++  +|...   .+|+.|++++|+++.||.+++++++|+.+...++++.
T Consensus       405 ----~~LdLS~N~Lss--IP~l~---~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        405 ----KELMVSGNRLTS--LPMLP---SGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS  458 (788)
T ss_pred             ----CEEEccCCcCCC--CCcch---hhhhhhhhccCcccccChHHhhccCCCeEECCCCCCC
Confidence                577888888874  67543   4577788888888888888888888887765555543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.79  E-value=2.2e-19  Score=178.27  Aligned_cols=233  Identities=24%  Similarity=0.231  Sum_probs=134.2

Q ss_pred             CccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCC-----------------CCCCcEEEccCCCCCcccc
Q psy5270           3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSS-----------------LPKLRILNLGMNRLSSLPR   65 (352)
Q Consensus         3 ~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~-----------------L~~L~~L~L~~N~l~~ip~   65 (352)
                      +|+.|++++|+|+.+|..   +++|++|++++|+++.+|....+                 .++|+.|++++|+++.+|.
T Consensus       223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~  299 (788)
T PRK15387        223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV  299 (788)
T ss_pred             CCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCcccccceeeccCCchhhhhhchhhcCEEECcCCccccccc
Confidence            456666666666666642   34566666666666655532211                 1234455555666655554


Q ss_pred             ccCCCCCCCEEEccCCCCCCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccc
Q psy5270          66 GFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISS  145 (352)
Q Consensus        66 ~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss  145 (352)
                      .   .++|+.|++++|++++  +|...   .+|+.|++++|+++.+|...   .+|+.|+++++.         +..+..
T Consensus       300 ~---p~~L~~LdLS~N~L~~--Lp~lp---~~L~~L~Ls~N~L~~LP~lp---~~Lq~LdLS~N~---------Ls~LP~  359 (788)
T PRK15387        300 L---PPGLQELSVSDNQLAS--LPALP---SELCKLWAYNNQLTSLPTLP---SGLQELSVSDNQ---------LASLPT  359 (788)
T ss_pred             c---ccccceeECCCCcccc--CCCCc---ccccccccccCccccccccc---cccceEecCCCc---------cCCCCC
Confidence            2   3578888888888875  55422   23555556666665555321   233344333200         000000


Q ss_pred             cccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccch
Q psy5270         146 MAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEA  225 (352)
Q Consensus       146 ~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~  225 (352)
                         .  .+.+..+..+.+.+..+.. .... ...+++++|.++++.+ .  ...+..+++++|+++.+|...   ..|  
T Consensus       360 ---l--p~~L~~L~Ls~N~L~~LP~-l~~~-L~~LdLs~N~Lt~LP~-l--~s~L~~LdLS~N~LssIP~l~---~~L--  424 (788)
T PRK15387        360 ---L--PSELYKLWAYNNRLTSLPA-LPSG-LKELIVSGNRLTSLPV-L--PSELKELMVSGNRLTSLPMLP---SGL--  424 (788)
T ss_pred             ---C--CcccceehhhccccccCcc-cccc-cceEEecCCcccCCCC-c--ccCCCEEEccCCcCCCCCcch---hhh--
Confidence               0  0011111112222221111 0011 1244567788876432 2  246778899999999998643   233  


Q ss_pred             hhhhhhhhhccccccccCCCchhhhhHHhHhhhCCCCcce-ecchhhhccccccc
Q psy5270         226 FSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQI  279 (352)
Q Consensus       226 ~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~-~iP~~l~~l~~L~~  279 (352)
                          +.|++++|+++  .+|.+++++++|+.|+|++|.|+ .+|..+..+.+...
T Consensus       425 ----~~L~Ls~NqLt--~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~s~~~  473 (788)
T PRK15387        425 ----LSLSVYRNQLT--RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPG  473 (788)
T ss_pred             ----hhhhhccCccc--ccChHHhhccCCCeEECCCCCCCchHHHHHHHHhcCcc
Confidence                68999999998  69999999999999999999999 88888866655543

>KOG0618|consensus

Probab=99.78  E-value=2.9e-20  Score=180.64  Aligned_cols=246  Identities=25%  Similarity=0.329  Sum_probs=189.4

Q ss_pred             CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCC
Q psy5270           2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYN   81 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N   81 (352)
                      ++|+.|+.++|.++++-..+ --.+|+++|++.|+++.+|++++.+.+|+.++..+|+|+.+|..+..+++|+.|+...|
T Consensus       219 ~~l~~L~a~~n~l~~~~~~p-~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n  297 (1081)
T KOG0618|consen  219 PSLTALYADHNPLTTLDVHP-VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYN  297 (1081)
T ss_pred             cchheeeeccCcceeecccc-ccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhh
Confidence            46888999999988332222 12479999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCccccCccCcEEEccCCccccchhhccCcc--cHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccc
Q psy5270          82 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLK--NLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYC  159 (352)
Q Consensus        82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~--~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~  159 (352)
                      .+.  .+|+..+.+++|+.|+|..|++..+|..+-...  .++.+..+.                  ..+..+|   +|.
T Consensus       298 el~--yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~------------------n~l~~lp---~~~  354 (1081)
T KOG0618|consen  298 ELE--YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSS------------------NKLSTLP---SYE  354 (1081)
T ss_pred             hhh--hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhh------------------ccccccc---ccc
Confidence            997  489999999999999999999999988432211  133332221                  1111112   111


Q ss_pred             cchhhhhhhhHHhHHHHHHHHhcCCceeec-ccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhcccc
Q psy5270         160 ASKFAVRGLMEALAEELREDARNSKIKFTS-IFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNN  238 (352)
Q Consensus       160 ~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g-~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~  238 (352)
                      ..           .......+.+.+|.++. .+|-......++.++|++|+++++|+.     .+..+..|+.|+||+|+
T Consensus       355 e~-----------~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas-----~~~kle~LeeL~LSGNk  418 (1081)
T KOG0618|consen  355 EN-----------NHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPAS-----KLRKLEELEELNLSGNK  418 (1081)
T ss_pred             ch-----------hhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHH-----HHhchHHhHHHhcccch
Confidence            00           00111234566788876 466667888899999999999999976     22333344799999999


Q ss_pred             ccccCCCchhhhhHHhHhhhCCCCcceecchhhhcccccccccCCceeeecc
Q psy5270         239 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIMLEPRWVISMG  290 (352)
Q Consensus       239 l~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP~~l~~l~~L~~l~~~~~~~~~~  290 (352)
                      ++  .+|+++.++..|++|....|++...| ++.++++|++++.+.+.+...
T Consensus       419 L~--~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~  467 (1081)
T KOG0618|consen  419 LT--TLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEV  467 (1081)
T ss_pred             hh--hhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhh
Confidence            98  69999999999999999999999999 999999999997776655443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=6.3e-19  Score=175.77  Aligned_cols=216  Identities=25%  Similarity=0.370  Sum_probs=164.4

Q ss_pred             CccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCC
Q psy5270           3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNN   82 (352)
Q Consensus         3 ~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~   82 (352)
                      +.+.|+++++.++.+|..+.  ++|+.|+|++|+++.+|..+.  ++|+.|++++|+|+.+|..+.  .+|+.|+|++|+
T Consensus       179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~  252 (754)
T PRK15370        179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR  252 (754)
T ss_pred             CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCc
Confidence            56789999999999998875  489999999999999998765  589999999999999998664  479999999999


Q ss_pred             CCCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccch
Q psy5270          83 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASK  162 (352)
Q Consensus        83 l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~  162 (352)
                      +.  .+|..+.  ++|++|++++|+++.+|..+.  .+|+.|+++.                  +.+..+|...      
T Consensus       253 L~--~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~------------------N~Lt~LP~~l------  302 (754)
T PRK15370        253 IT--ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYD------------------NSIRTLPAHL------  302 (754)
T ss_pred             cC--cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCC------------------CccccCcccc------
Confidence            97  4888775  589999999999999988765  3566655543                  1111222110      


Q ss_pred             hhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhcccccccc
Q psy5270         163 FAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQ  242 (352)
Q Consensus       163 ~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~  242 (352)
                                .. ....+.+++|+++++ |... ...++.+++++|.++.+|..+.  +.|      +.|++++|+++  
T Consensus       303 ----------p~-sL~~L~Ls~N~Lt~L-P~~l-~~sL~~L~Ls~N~Lt~LP~~l~--~sL------~~L~Ls~N~L~--  359 (754)
T PRK15370        303 ----------PS-GITHLNVQSNSLTAL-PETL-PPGLKTLEAGENALTSLPASLP--PEL------QVLDVSKNQIT--  359 (754)
T ss_pred             ----------hh-hHHHHHhcCCccccC-Cccc-cccceeccccCCccccCChhhc--Ccc------cEEECCCCCCC--
Confidence                      00 113456777888764 3222 2467888999999999997653  344      79999999997  


Q ss_pred             CCCchhhhhHHhHhhhCCCCcceecchhhhccccccccc
Q psy5270         243 SLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIML  281 (352)
Q Consensus       243 ~iP~~~~~l~~L~~L~Ls~N~l~~iP~~l~~l~~L~~l~  281 (352)
                      .+|..+.  ++|++|+|++|+|+.+|..+..  .|+.++
T Consensus       360 ~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~~--sL~~Ld  394 (754)
T PRK15370        360 VLPETLP--PTITTLDVSRNALTNLPENLPA--ALQIMQ  394 (754)
T ss_pred             cCChhhc--CCcCEEECCCCcCCCCCHhHHH--HHHHHh
Confidence            4887764  6899999999999999988753  455553

>KOG0532|consensus

Probab=99.72  E-value=1.9e-19  Score=166.78  Aligned_cols=67  Identities=28%  Similarity=0.525  Sum_probs=55.2

Q ss_pred             cccccCCCcccCCCCCcccchhhhhhhhhhccccccccCCCchhhhhHHhHhhhCCCCcceecchhhhcccccccc
Q psy5270         205 IKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIM  280 (352)
Q Consensus       205 l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP~~l~~l~~L~~l  280 (352)
                      +..|++..+|++++.++-       ..||+|.|+++  .||-+|.+|+.|++|-|.+|-|..-|+.|.-..++-++
T Consensus       196 vrRn~l~~lp~El~~LpL-------i~lDfScNkis--~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIF  262 (722)
T KOG0532|consen  196 VRRNHLEDLPEELCSLPL-------IRLDFSCNKIS--YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIF  262 (722)
T ss_pred             HhhhhhhhCCHHHhCCce-------eeeecccCcee--ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeee
Confidence            445777888888886654       47999999998  69999999999999999999999999988665555544

>KOG4237|consensus

Probab=99.71  E-value=3.4e-19  Score=158.64  Aligned_cols=265  Identities=25%  Similarity=0.273  Sum_probs=182.7

Q ss_pred             CccEEEeeCCcCcccCcc-ccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccC-CCCCccccc-cCCCCCCCEEEc
Q psy5270           3 YITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGM-NRLSSLPRG-FGAFPVLEVLDL   78 (352)
Q Consensus         3 ~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~-N~l~~ip~~-~~~l~~L~~L~L   78 (352)
                      .-+.++|..|+|+.||+. |+.+.+|+.|||++|.++.| |+.|..+.+|..|-+.+ |+|+.+|.. |+++.+|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            356899999999999975 88999999999999999977 88999999987776655 999999986 899999999999


Q ss_pred             cCCCCCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhcchh-------hHhhcCceEeecccccccc
Q psy5270          79 TYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETFLPD-------MMEKNRGHIVGISSMAGIV  150 (352)
Q Consensus        79 s~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~~p~-------~~~~~~g~i~~iss~~~l~  150 (352)
                      .-|++.- ...+.|..+++|..|.+.+|.+..|+. .+..+.+++.+.++..|.       |.....  ......   .+
T Consensus       148 Nan~i~C-ir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~--a~~~ie---ts  221 (498)
T KOG4237|consen  148 NANHINC-IRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDL--AMNPIE---TS  221 (498)
T ss_pred             Chhhhcc-hhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHH--hhchhh---cc
Confidence            9999987 556789999999999999999999988 888899999888776441       111100  000000   11


Q ss_pred             CCCCccccccchhhhhhhhHHhHHHHHHHH--hcCC-ceeecccCc--ccccCCccCcccccccCCCccc-CCCCCcccc
Q psy5270         151 GLPNLVPYCASKFAVRGLMEALAEELREDA--RNSK-IKFTSIFPF--MVDTGLCKNPKIKMNRLSSLPR-GFGAFPVLE  224 (352)
Q Consensus       151 ~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~--~~~~-n~~~g~~P~--~~~~~~l~~l~l~~n~l~~ip~-~~~~l~~L~  224 (352)
                      +..-...|......+...-..-..+..+.+  +.+. -..-++.|.  +-.++.+..+++++|+++.|-+ .|..+..+ 
T Consensus       222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l-  300 (498)
T KOG4237|consen  222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAEL-  300 (498)
T ss_pred             cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhh-
Confidence            111112222222222211111111110000  1111 122233442  2256678888999999997754 44444444 


Q ss_pred             hhhhhhhhhhccccccccCCCchhhhhHHhHhhhCCCCcce-ecchhhhcccccccc
Q psy5270         225 AFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQIM  280 (352)
Q Consensus       225 ~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~-~iP~~l~~l~~L~~l  280 (352)
                           +.|.|..|++.. .--..|.+++.|++|+|.+|+++ .-|-.|..+.+|..+
T Consensus       301 -----~eL~L~~N~l~~-v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l  351 (498)
T KOG4237|consen  301 -----QELYLTRNKLEF-VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTL  351 (498)
T ss_pred             -----hhhhcCcchHHH-HHHHhhhccccceeeeecCCeeEEEecccccccceeeee
Confidence                 789999999975 33556889999999999999999 668778877777766

>KOG0617|consensus

Probab=99.70  E-value=8.8e-19  Score=139.62  Aligned_cols=168  Identities=33%  Similarity=0.508  Sum_probs=120.1

Q ss_pred             ccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCCCCCCCCCCccccCccCcE
Q psy5270          21 LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRA  100 (352)
Q Consensus        21 l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~  100 (352)
                      +.++++.+.|.|++|+++.+|+.+..+.+|++|++.+|+++++|.+++.+++|+.|+++-|++.  .+|..||.++.|+.
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~--~lprgfgs~p~lev  106 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN--ILPRGFGSFPALEV  106 (264)
T ss_pred             ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh--cCccccCCCchhhh
Confidence            3455556666666666666666666666666666666666666666666666666666666664  35666666666666


Q ss_pred             EEccCCccc--cchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHH
Q psy5270         101 LYLGDNDFE--VLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRE  178 (352)
Q Consensus       101 L~l~~N~l~--~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~  178 (352)
                      ||+..|+++  .+|..|..++.|+                                                        
T Consensus       107 ldltynnl~e~~lpgnff~m~tlr--------------------------------------------------------  130 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLR--------------------------------------------------------  130 (264)
T ss_pred             hhccccccccccCCcchhHHHHHH--------------------------------------------------------
Confidence            666666665  3454433333332                                                        


Q ss_pred             HHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhccccccccCCCchhhhhHHhHhhh
Q psy5270         179 DARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALY  258 (352)
Q Consensus       179 ~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~  258 (352)
                                             .++++.|.|.-+|.++|.+++|      +.|.+..|.+-  ++|..++.|+.|+.|.
T Consensus       131 -----------------------alyl~dndfe~lp~dvg~lt~l------qil~lrdndll--~lpkeig~lt~lrelh  179 (264)
T KOG0617|consen  131 -----------------------ALYLGDNDFEILPPDVGKLTNL------QILSLRDNDLL--SLPKEIGDLTRLRELH  179 (264)
T ss_pred             -----------------------HHHhcCCCcccCChhhhhhcce------eEEeeccCchh--hCcHHHHHHHHHHHHh
Confidence                                   3456678899999999999999      69999999997  6999999999999999


Q ss_pred             CCCCcceecchhhhccccc
Q psy5270         259 LGDNDFEVLPAEIGNLKNL  277 (352)
Q Consensus       259 Ls~N~l~~iP~~l~~l~~L  277 (352)
                      +.+|+++.+|++++++.-+
T Consensus       180 iqgnrl~vlppel~~l~l~  198 (264)
T KOG0617|consen  180 IQGNRLTVLPPELANLDLV  198 (264)
T ss_pred             cccceeeecChhhhhhhhh
Confidence            9999999999999988654

>PLN03210 Resistant to P

Probab=99.70  E-value=1e-16  Score=169.44  Aligned_cols=122  Identities=25%  Similarity=0.335  Sum_probs=97.3

Q ss_pred             CccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCC-CCccccccCCCCCCCEEEccCC
Q psy5270           3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNR-LSSLPRGFGAFPVLEVLDLTYN   81 (352)
Q Consensus         3 ~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~Ls~N   81 (352)
                      +|+.|++.++.++.+|..+ ...+|++|++.+|++..+|..+..+++|+.|+|+++. +..+|. ++.+++|+.|++++|
T Consensus       590 ~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c  667 (1153)
T PLN03210        590 KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDC  667 (1153)
T ss_pred             ccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCC
Confidence            5788888888888888887 4678899999998888888888888889999998764 557774 788888999999887


Q ss_pred             CCCCCCCCCccccCccCcEEEccCC-ccccchhhccCcccHHHHHHhc
Q psy5270          82 NLNEQSLPGNFFMLETLRALYLGDN-DFEVLPAEIGNLKNLQIILETF  128 (352)
Q Consensus        82 ~l~g~~~p~~~~~l~~L~~L~l~~N-~l~~ip~~~~nl~~L~~L~l~~  128 (352)
                      .... .+|.+++++++|+.|++++| .++.+|..+ ++++|+.|.++.
T Consensus       668 ~~L~-~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsg  713 (1153)
T PLN03210        668 SSLV-ELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSG  713 (1153)
T ss_pred             CCcc-ccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCC
Confidence            7555 68888888888999999886 466788765 667777666554

syringae 6; Provisional

>KOG0618|consensus

Probab=99.67  E-value=9.2e-19  Score=170.29  Aligned_cols=74  Identities=30%  Similarity=0.372  Sum_probs=60.1

Q ss_pred             CccCcccccccCCCcccCCCCCcccchhhhhhhhhhccccccccCCCchhhhhHHhHhhhCCCCcceecchhhhcccccc
Q psy5270         199 LCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ  278 (352)
Q Consensus       199 ~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP~~l~~l~~L~  278 (352)
                      .++.++++.|+++.+|++++.+.++      +.++..+|+|+  .+|..+...++|+.|+..+|.++-||+..+.+++|+
T Consensus       242 nl~~~dis~n~l~~lp~wi~~~~nl------e~l~~n~N~l~--~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~  313 (1081)
T KOG0618|consen  242 NLQYLDISHNNLSNLPEWIGACANL------EALNANHNRLV--ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLR  313 (1081)
T ss_pred             cceeeecchhhhhcchHHHHhcccc------eEecccchhHH--hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceee
Confidence            4667788999999999888888887      57888888885  578888888888888888888888888777777777


Q ss_pred             cc
Q psy5270         279 IM  280 (352)
Q Consensus       279 ~l  280 (352)
                      .|
T Consensus       314 tL  315 (1081)
T KOG0618|consen  314 TL  315 (1081)
T ss_pred             ee
Confidence            76

>PLN03210 Resistant to P

Probab=99.66  E-value=2.7e-16  Score=166.27  Aligned_cols=125  Identities=22%  Similarity=0.309  Sum_probs=107.3

Q ss_pred             CCCccEEEeeCCc------Cc-ccCccccCCC-CCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCC
Q psy5270           1 MLYITRITLSHNK------LK-EIPPGLANLV-NLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPV   72 (352)
Q Consensus         1 l~~L~~L~Ls~N~------l~-~ip~~l~~l~-~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~   72 (352)
                      |++|+.|.+..+.      +. .+|.++..++ +|+.|++.+|.+..+|..+ ...+|+.|++++|++..+|.++..+++
T Consensus       557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~  635 (1153)
T PLN03210        557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTG  635 (1153)
T ss_pred             CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCC
Confidence            5788999987653      34 5788887764 6999999999999999887 578999999999999999999999999


Q ss_pred             CCEEEccCCCCCCCCCCCccccCccCcEEEccCCc-cccchhhccCcccHHHHHHhc
Q psy5270          73 LEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDND-FEVLPAEIGNLKNLQIILETF  128 (352)
Q Consensus        73 L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~-l~~ip~~~~nl~~L~~L~l~~  128 (352)
                      |+.|+|++|...+ .+|. ++.+++|+.|++++|. +..+|.+++++++|+.|+++.
T Consensus       636 Lk~L~Ls~~~~l~-~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~  690 (1153)
T PLN03210        636 LRNIDLRGSKNLK-EIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR  690 (1153)
T ss_pred             CCEEECCCCCCcC-cCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCC
Confidence            9999999886544 5774 8889999999999976 569999999999999888765

syringae 6; Provisional

>KOG0532|consensus

Probab=99.61  E-value=2.4e-17  Score=152.98  Aligned_cols=194  Identities=29%  Similarity=0.433  Sum_probs=161.6

Q ss_pred             EEEeeCCcCcccCcc--ccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCCC
Q psy5270           6 RITLSHNKLKEIPPG--LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNL   83 (352)
Q Consensus         6 ~L~Ls~N~l~~ip~~--l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l   83 (352)
                      +|.|++-.+.++|..  =-.++.-...||+.|+|.++|..++.+..|+.+.|..|.+-.||+.++++..|++|||+.|++
T Consensus        54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql  133 (722)
T KOG0532|consen   54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL  133 (722)
T ss_pred             ccccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchh
Confidence            355666667666643  234666778899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchh
Q psy5270          84 NEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKF  163 (352)
Q Consensus        84 ~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~  163 (352)
                      +  .+|..++.|+ |+.|-+++|+++.+|+.++....|..++.                                     
T Consensus       134 S--~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~-------------------------------------  173 (722)
T KOG0532|consen  134 S--HLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDV-------------------------------------  173 (722)
T ss_pred             h--cCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhh-------------------------------------
Confidence            8  4899999887 99999999999999999986565554433                                     


Q ss_pred             hhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhccccccccC
Q psy5270         164 AVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQS  243 (352)
Q Consensus       164 ~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~~  243 (352)
                                                                +.|.+.++|..++.+..+      +.|.++.|++.  .
T Consensus       174 ------------------------------------------s~nei~slpsql~~l~sl------r~l~vrRn~l~--~  203 (722)
T KOG0532|consen  174 ------------------------------------------SKNEIQSLPSQLGYLTSL------RDLNVRRNHLE--D  203 (722)
T ss_pred             ------------------------------------------hhhhhhhchHHhhhHHHH------HHHHHhhhhhh--h
Confidence                                                      345666777777777777      79999999997  6


Q ss_pred             CCchhhhhHHhHhhhCCCCcceecchhhhcccccccccCCceeeecc
Q psy5270         244 LPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIMLEPRWVISMG  290 (352)
Q Consensus       244 iP~~~~~l~~L~~L~Ls~N~l~~iP~~l~~l~~L~~l~~~~~~~~~~  290 (352)
                      +|..++.|+ |..||+|.|+++.||.+|.+|+.|+++...++|....
T Consensus       204 lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  204 LPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             CCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeeccCCCCCC
Confidence            899999554 8999999999999999999999999997667666544

>COG0377 NuoB NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases [Energy production and conversion]

Probab=99.56  E-value=4.8e-15  Score=117.94  Aligned_cols=65  Identities=68%  Similarity=1.316  Sum_probs=63.6

Q ss_pred             ccccCCceeeeccccccCCcccccccccccCCCcccccceecCCCCCCHHHHHHHHHHHHHHHHh
Q psy5270         278 QIMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKR  342 (352)
Q Consensus       278 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gcpp~~~~~~~~~~~~~~~~~~  342 (352)
                      +.+.+++|.++.|.|.+.+|.|..+|+.+.|+|.++|+|+++|||||+|+|+++|+.++++|+++
T Consensus        98 dQMPePK~VIsMGsCa~~GG~f~~sYsvV~g~D~~vPVDvyIPGCPPrPEAl~~gi~~Lq~KI~~  162 (194)
T COG0377          98 DQMPEPKWVISMGSCANSGGMYWNSYSVVQGVDRVVPVDVYIPGCPPRPEALLYGILLLQEKIRR  162 (194)
T ss_pred             HhCCCCcEEEEecccccCCCcccccceeeeccceeEeeeeecCCCCCCHHHHHHHHHHHHHHHHh
Confidence            77899999999999999999999999999999999999999999999999999999999999998

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.52  E-value=7.8e-15  Score=138.70  Aligned_cols=197  Identities=30%  Similarity=0.428  Sum_probs=146.8

Q ss_pred             EEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCC-CCcEEEccCCCCCccccccCCCCCCCEEEccCCCCC
Q psy5270           6 RITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLP-KLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLN   84 (352)
Q Consensus         6 ~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~-~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~   84 (352)
                      .++++.|.+..-+..+..++.++.|++.+|.++.+|+..+.+. +|+.|++++|++..+|..++.+++|+.|++++|+++
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~  176 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS  176 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence            4677777765444445566789999999999999988888885 899999999999999888899999999999999997


Q ss_pred             CCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhh
Q psy5270          85 EQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFA  164 (352)
Q Consensus        85 g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~  164 (352)
                      .  +|...+.+++|+.|++++|+++.+|..++....|+.+.++..+         +.                       
T Consensus       177 ~--l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~---------~~-----------------------  222 (394)
T COG4886         177 D--LPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS---------II-----------------------  222 (394)
T ss_pred             h--hhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc---------ce-----------------------
Confidence            4  7888778889999999999999999887767778777666411         00                       


Q ss_pred             hhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhccccccccCC
Q psy5270         165 VRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSL  244 (352)
Q Consensus       165 l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~~i  244 (352)
                                              ...........+..+.+.+|++..+|..++.+..+      +.|++++|.++  .+
T Consensus       223 ------------------------~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l------~~L~~s~n~i~--~i  270 (394)
T COG4886         223 ------------------------ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNL------ETLDLSNNQIS--SI  270 (394)
T ss_pred             ------------------------ecchhhhhcccccccccCCceeeeccchhcccccc------ceecccccccc--cc
Confidence                                    00000011222333446677777667777777776      68899999987  45


Q ss_pred             CchhhhhHHhHhhhCCCCcceecch
Q psy5270         245 PGNFFMLETLRALYLGDNDFEVLPA  269 (352)
Q Consensus       245 P~~~~~l~~L~~L~Ls~N~l~~iP~  269 (352)
                      +. ++.+..++.||+++|.++.++.
T Consensus       271 ~~-~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         271 SS-LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             cc-ccccCccCEEeccCccccccch
Confidence            65 8888889999999998884443

>KOG4237|consensus

Probab=99.51  E-value=9.5e-16  Score=136.83  Aligned_cols=260  Identities=22%  Similarity=0.242  Sum_probs=155.8

Q ss_pred             EEeeCCcCcccCccccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCcc-ccccCCCCCCCEEEccC-CCC
Q psy5270           7 ITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSL-PRGFGAFPVLEVLDLTY-NNL   83 (352)
Q Consensus         7 L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~Ls~-N~l   83 (352)
                      .|-++-.+++||..+.-  ....++|..|+++.||+ +|+.+++|+.|||++|+|+.| |..|.++.+|..|-+.+ |+|
T Consensus        51 VdCr~~GL~eVP~~LP~--~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI  128 (498)
T KOG4237|consen   51 VDCRGKGLTEVPANLPP--ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI  128 (498)
T ss_pred             EEccCCCcccCcccCCC--cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence            45666778889987754  67899999999998876 899999999999999999977 67799999887766655 999


Q ss_pred             CCCCCCC-ccccCccCcEEEccCCccccch-hhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccc
Q psy5270          84 NEQSLPG-NFFMLETLRALYLGDNDFEVLP-AEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCAS  161 (352)
Q Consensus        84 ~g~~~p~-~~~~l~~L~~L~l~~N~l~~ip-~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s  161 (352)
                      +.  +|. .|++|.+|+.|.+.-|++.-++ ..|..++++..|.+.....       +.+.-   ..+.++.........
T Consensus       129 ~~--l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~-------q~i~~---~tf~~l~~i~tlhlA  196 (498)
T KOG4237|consen  129 TD--LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKI-------QSICK---GTFQGLAAIKTLHLA  196 (498)
T ss_pred             hh--hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhh-------hhhcc---ccccchhccchHhhh
Confidence            85  665 7899999999999999999554 4778888877665543110       00000   011111111111111


Q ss_pred             hhhhhh--hhHHhHHHHH------------HHHhcCCceeecccCcccccC--Cc-cCcccccccCCCccc-CCCCCccc
Q psy5270         162 KFAVRG--LMEALAEELR------------EDARNSKIKFTSIFPFMVDTG--LC-KNPKIKMNRLSSLPR-GFGAFPVL  223 (352)
Q Consensus       162 ~~~l~~--~~~~l~~~l~------------~~~~~~~n~~~g~~P~~~~~~--~l-~~l~l~~n~l~~ip~-~~~~l~~L  223 (352)
                      ++.+..  ..+.++..+.            .-.++...++..+-+.-+...  .+ ..+..+.+-...-|. .|..+++|
T Consensus       197 ~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L  276 (498)
T KOG4237|consen  197 QNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNL  276 (498)
T ss_pred             cCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccc
Confidence            111000  0000000000            000011111111111100000  00 000111111112221 24444555


Q ss_pred             chhhhhhhhhhccccccccCCCchhhhhHHhHhhhCCCCcceecchh-hhcccccccccCCceee
Q psy5270         224 EAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQIMLEPRWVI  287 (352)
Q Consensus       224 ~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP~~-l~~l~~L~~l~~~~~~~  287 (352)
                            +.|+|++|++++ .-+.+|..+.+++.|+|..|++..+-.. |.++..|+.|..-.+.+
T Consensus       277 ------~~lnlsnN~i~~-i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~i  334 (498)
T KOG4237|consen  277 ------RKLNLSNNKITR-IEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQI  334 (498)
T ss_pred             ------eEeccCCCccch-hhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCee
Confidence                  899999999998 5788999999999999999999966554 78888888874333333

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.43  E-value=6.3e-14  Score=132.49  Aligned_cols=182  Identities=32%  Similarity=0.458  Sum_probs=146.2

Q ss_pred             CCccEEEeeCCcCcccCccccCCC-CCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccC
Q psy5270           2 LYITRITLSHNKLKEIPPGLANLV-NLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTY   80 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~~l~~l~-~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~   80 (352)
                      +.++.|++.+|.+++||+..+.+. +|++|++++|++..+|..++.+++|+.|++++|+++.+|...+..++|+.|++++
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~  195 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG  195 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC
Confidence            468899999999999999998885 9999999999999999999999999999999999999999888999999999999


Q ss_pred             CCCCCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCcccccc
Q psy5270          81 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA  160 (352)
Q Consensus        81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~  160 (352)
                      |+++  .+|..++.+..|+++++++|....++..+.++.++..+.+..                                
T Consensus       196 N~i~--~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~--------------------------------  241 (394)
T COG4886         196 NKIS--DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN--------------------------------  241 (394)
T ss_pred             Cccc--cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC--------------------------------
Confidence            9998  589988888889999999998777778888877776654322                                


Q ss_pred             chhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhcccccc
Q psy5270         161 SKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLN  240 (352)
Q Consensus       161 s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~  240 (352)
                                              |++....-.......++.+++++|+++.++. ++.+..+      +.||+++|.++
T Consensus       242 ------------------------n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l------~~L~~s~n~~~  290 (394)
T COG4886         242 ------------------------NKLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNL------RELDLSGNSLS  290 (394)
T ss_pred             ------------------------ceeeeccchhccccccceecccccccccccc-ccccCcc------CEEeccCcccc
Confidence                                    1111000000122335677888999988877 6777777      79999999998


Q ss_pred             ccCCCchhh
Q psy5270         241 EQSLPGNFF  249 (352)
Q Consensus       241 g~~iP~~~~  249 (352)
                      . .+|....
T Consensus       291 ~-~~~~~~~  298 (394)
T COG4886         291 N-ALPLIAL  298 (394)
T ss_pred             c-cchhhhc
Confidence            6 4554443

>PLN03150 hypothetical protein; Provisional

Probab=99.38  E-value=7.5e-13  Score=131.46  Aligned_cols=105  Identities=28%  Similarity=0.443  Sum_probs=77.7

Q ss_pred             ccEEEeeCCcCc-ccCccccCCCCCCEEEccCCcCc-ccccccCCCCCCcEEEccCCCCC-ccccccCCCCCCCEEEccC
Q psy5270           4 ITRITLSHNKLK-EIPPGLANLVNLEILTLFNNQIE-TLPTSLSSLPKLRILNLGMNRLS-SLPRGFGAFPVLEVLDLTY   80 (352)
Q Consensus         4 L~~L~Ls~N~l~-~ip~~l~~l~~L~~L~L~~N~l~-~ip~~l~~L~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~Ls~   80 (352)
                      ++.|+|++|.++ .+|++++++++|+.|+|++|.++ .+|+.++.+++|+.|+|++|+++ .+|+.++++++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            566777777777 77777777777777777777776 67777777777777777777777 6777777777777777777


Q ss_pred             CCCCCCCCCCccccC-ccCcEEEccCCccc
Q psy5270          81 NNLNEQSLPGNFFML-ETLRALYLGDNDFE  109 (352)
Q Consensus        81 N~l~g~~~p~~~~~l-~~L~~L~l~~N~l~  109 (352)
                      |+++| .+|..++.+ .++..+++.+|...
T Consensus       500 N~l~g-~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        500 NSLSG-RVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             Ccccc-cCChHHhhccccCceEEecCCccc
Confidence            77777 677777654 35667777777644

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.38  E-value=6.4e-15  Score=135.04  Aligned_cols=102  Identities=29%  Similarity=0.346  Sum_probs=49.9

Q ss_pred             EEeeCCcCc--ccCccccCCCCCCEEEccCCcCc-----ccccccCCCCCCcEEEccCCCCCc-------cccccCCCCC
Q psy5270           7 ITLSHNKLK--EIPPGLANLVNLEILTLFNNQIE-----TLPTSLSSLPKLRILNLGMNRLSS-------LPRGFGAFPV   72 (352)
Q Consensus         7 L~Ls~N~l~--~ip~~l~~l~~L~~L~L~~N~l~-----~ip~~l~~L~~L~~L~L~~N~l~~-------ip~~~~~l~~   72 (352)
                      |+|..++++  ..+.-+..+.+|++|+++++.++     .++..+...++++.++++++.+..       ++..+.++++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~   82 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG   82 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence            455555554  33333444445555555555552     234444455555555555554442       1233444555


Q ss_pred             CCEEEccCCCCCCCCCCCccccCcc---CcEEEccCCccc
Q psy5270          73 LEVLDLTYNNLNEQSLPGNFFMLET---LRALYLGDNDFE  109 (352)
Q Consensus        73 L~~L~Ls~N~l~g~~~p~~~~~l~~---L~~L~l~~N~l~  109 (352)
                      |+.|++++|.+.+ ..+..+..+.+   |++|++++|+++
T Consensus        83 L~~L~l~~~~~~~-~~~~~~~~l~~~~~L~~L~ls~~~~~  121 (319)
T cd00116          83 LQELDLSDNALGP-DGCGVLESLLRSSSLQELKLNNNGLG  121 (319)
T ss_pred             eeEEEccCCCCCh-hHHHHHHHHhccCcccEEEeeCCccc
Confidence            5555555555543 33444444443   555555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.36  E-value=2.3e-14  Score=131.37  Aligned_cols=211  Identities=23%  Similarity=0.241  Sum_probs=133.9

Q ss_pred             CCccEEEeeCCcCcc-------cCccccCCCCCCEEEccCCcCc-ccccccCCCCC---CcEEEccCCCCCc-----ccc
Q psy5270           2 LYITRITLSHNKLKE-------IPPGLANLVNLEILTLFNNQIE-TLPTSLSSLPK---LRILNLGMNRLSS-----LPR   65 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~-------ip~~l~~l~~L~~L~L~~N~l~-~ip~~l~~L~~---L~~L~L~~N~l~~-----ip~   65 (352)
                      +.+++++++++.+..       ++..+.++++|++|++++|.+. ..+..+..+.+   |++|++++|+++.     +..
T Consensus        51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~  130 (319)
T cd00116          51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK  130 (319)
T ss_pred             CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence            468899999987763       3455778889999999999997 45555655555   9999999999872     344


Q ss_pred             ccCCC-CCCCEEEccCCCCCCC---CCCCccccCccCcEEEccCCcccc-----chhhccCcccHHHHHHhcchhhHhhc
Q psy5270          66 GFGAF-PVLEVLDLTYNNLNEQ---SLPGNFFMLETLRALYLGDNDFEV-----LPAEIGNLKNLQIILETFLPDMMEKN  136 (352)
Q Consensus        66 ~~~~l-~~L~~L~Ls~N~l~g~---~~p~~~~~l~~L~~L~l~~N~l~~-----ip~~~~nl~~L~~L~l~~~p~~~~~~  136 (352)
                      .+..+ ++|+.|++++|.+++.   .++..+..+++|++|++++|.++.     ++..+...++|+.++++..       
T Consensus       131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-------  203 (319)
T cd00116         131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN-------  203 (319)
T ss_pred             HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC-------
Confidence            56677 8999999999999851   234456667789999999999982     3444554455555544431       


Q ss_pred             CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCc-cc
Q psy5270         137 RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSL-PR  215 (352)
Q Consensus       137 ~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~i-p~  215 (352)
                                                 .+.+.   ....+...              ....+.++.+++++|.++.. ..
T Consensus       204 ---------------------------~i~~~---~~~~l~~~--------------~~~~~~L~~L~ls~n~l~~~~~~  239 (319)
T cd00116         204 ---------------------------GLTDE---GASALAET--------------LASLKSLEVLNLGDNNLTDAGAA  239 (319)
T ss_pred             ---------------------------ccChH---HHHHHHHH--------------hcccCCCCEEecCCCcCchHHHH
Confidence                                       00000   00000000              01233556677777776631 11


Q ss_pred             CCCC-Ccccchhhhhhhhhhccccccc---cCCCchhhhhHHhHhhhCCCCcce
Q psy5270         216 GFGA-FPVLEAFSFTTILDLTYNNLNE---QSLPGNFFMLETLRALYLGDNDFE  265 (352)
Q Consensus       216 ~~~~-l~~L~~~~~L~~L~ls~N~l~g---~~iP~~~~~l~~L~~L~Ls~N~l~  265 (352)
                      .+.. +..  ....|+.|++++|.++.   ..+...+..+++|+++++++|.++
T Consensus       240 ~l~~~~~~--~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         240 ALASALLS--PNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             HHHHHHhc--cCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            1110 100  11234788999998862   134455666678899999999998

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK14818 NADH dehydrogenase subunit B; Provisional

Probab=99.27  E-value=8e-12  Score=99.87  Aligned_cols=68  Identities=54%  Similarity=1.044  Sum_probs=64.3

Q ss_pred             ccccCCceeeeccccccCCcccccccccccCCCcccccceecCCCCCCHHHHHHHHHHHHHHHHhhhh
Q psy5270         278 QIMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKI  345 (352)
Q Consensus       278 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gcpp~~~~~~~~~~~~~~~~~~~~~  345 (352)
                      +.+.++++.+..|.|...+|.|..+|+.+.++++++|+|+++|||||.|++++++++++++++++++.
T Consensus        93 eqmPePK~VIA~G~CA~sGGif~~sY~~~~gvd~vIpVDvyIPGCPP~PeaIl~gil~L~~~i~~~~~  160 (173)
T PRK14818         93 DQMPEPKYVISMGSCSNCGGLFQLGYSVCKGVDKVIPVDVYVPGCPPRPEALTEGLLRLQEIVRSEPW  160 (173)
T ss_pred             HhCCCCCEEEEeccccccCCcccCCcccccCCCCccCCcEEccCCCCCHHHHHHHHHHHHHHHhcccc
Confidence            66789999999999999999999999999999999999999999999999999999999999988743

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.27  E-value=4.6e-12  Score=104.62  Aligned_cols=106  Identities=34%  Similarity=0.484  Sum_probs=41.3

Q ss_pred             CccEEEeeCCcCcccCcccc-CCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCcccccc-CCCCCCCEEEccC
Q psy5270           3 YITRITLSHNKLKEIPPGLA-NLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGF-GAFPVLEVLDLTY   80 (352)
Q Consensus         3 ~L~~L~Ls~N~l~~ip~~l~-~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~-~~l~~L~~L~Ls~   80 (352)
                      ++++|+|++|.|+.|. .++ .+++|+.|+|++|.++.++ .+..+++|+.|++++|+++++.+.+ ..+++|+.|++++
T Consensus        20 ~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~   97 (175)
T PF14580_consen   20 KLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN   97 (175)
T ss_dssp             -----------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred             cccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence            4678889999888774 455 5788899999999888774 4777888999999999998886655 3688899999999


Q ss_pred             CCCCCCCCCCccccCccCcEEEccCCcccc
Q psy5270          81 NNLNEQSLPGNFFMLETLRALYLGDNDFEV  110 (352)
Q Consensus        81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~  110 (352)
                      |++....-=..+..+++|+.|++.+|.++.
T Consensus        98 N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   98 NKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             S---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             CcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence            988752223456677888899999888874

>KOG1259|consensus

Probab=99.24  E-value=1.6e-12  Score=112.77  Aligned_cols=124  Identities=29%  Similarity=0.328  Sum_probs=106.7

Q ss_pred             CccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCC
Q psy5270           3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNN   82 (352)
Q Consensus         3 ~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~   82 (352)
                      .|+.+|||+|.|++|..+..-++.++.|++++|.+..+.. +..|++|+.|||++|.++.+--+-..+.+.+.|.|++|.
T Consensus       285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~  363 (490)
T KOG1259|consen  285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK  363 (490)
T ss_pred             hhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh
Confidence            5789999999999999998888999999999999997754 889999999999999999776665666778899999998


Q ss_pred             CCCCCCCCccccCccCcEEEccCCccccchh--hccCcccHHHHHHhcch
Q psy5270          83 LNEQSLPGNFFMLETLRALYLGDNDFEVLPA--EIGNLKNLQIILETFLP  130 (352)
Q Consensus        83 l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~--~~~nl~~L~~L~l~~~p  130 (352)
                      +..   -..++.+-+|.+||+++|++..+.+  +||++..|+.+.+..+|
T Consensus       364 iE~---LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  364 IET---LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             Hhh---hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            853   3357788899999999999996654  89999999999877644

>PLN03150 hypothetical protein; Provisional

Probab=99.20  E-value=1.9e-11  Score=121.44  Aligned_cols=91  Identities=35%  Similarity=0.592  Sum_probs=86.3

Q ss_pred             CCEEEccCCcCc-ccccccCCCCCCcEEEccCCCCC-ccccccCCCCCCCEEEccCCCCCCCCCCCccccCccCcEEEcc
Q psy5270          27 LEILTLFNNQIE-TLPTSLSSLPKLRILNLGMNRLS-SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLG  104 (352)
Q Consensus        27 L~~L~L~~N~l~-~ip~~l~~L~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~  104 (352)
                      ++.|+|++|.++ .+|+.++.+++|+.|+|++|+++ .+|..++.+++|+.|+|++|+++| .+|+.++++++|++|+|+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg-~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG-SIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC-CCchHHhcCCCCCEEECc
Confidence            788999999998 88999999999999999999999 899999999999999999999999 899999999999999999


Q ss_pred             CCccc-cchhhccCc
Q psy5270         105 DNDFE-VLPAEIGNL  118 (352)
Q Consensus       105 ~N~l~-~ip~~~~nl  118 (352)
                      +|+++ .+|..+++.
T Consensus       499 ~N~l~g~iP~~l~~~  513 (623)
T PLN03150        499 GNSLSGRVPAALGGR  513 (623)
T ss_pred             CCcccccCChHHhhc
Confidence            99999 899988753

>PRK14813 NADH dehydrogenase subunit B; Provisional

Probab=99.15  E-value=6.6e-11  Score=96.34  Aligned_cols=69  Identities=52%  Similarity=1.014  Sum_probs=61.9

Q ss_pred             ccccCCceeeeccccccCCcc-cccccccccCCCcccccceecCCCCCCHHHHHHHHHHHHHHHHhhhhh
Q psy5270         278 QIMLEPRWVISMGSCANGGGY-YHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKIL  346 (352)
Q Consensus       278 ~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gcpp~~~~~~~~~~~~~~~~~~~~~~  346 (352)
                      +.+..+++.+..|.|...+|. ++.+|+.+.++++++|+|+++|||||+|++++.|++++++++++++..
T Consensus        90 ~qmPePK~VIA~GaCA~sGG~~~~~sY~~~~gvd~vIpVDv~IPGCPP~PeaIl~gl~~l~~~i~~~~~~  159 (189)
T PRK14813         90 EQMPEPRYVLSMGSCSNCGGPYWEHGYHVLKGVDRIIPVDVYVPGCPPRPEALIGGLMKVQELIRMEQIG  159 (189)
T ss_pred             HhCCCCCEEEEecccccCCCCcccCCcccccCCCCccCCcEEccCCCCCHHHHHHHHHHHHHHHHhcccc
Confidence            566889999999999976554 556999999999999999999999999999999999999999988654

>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion]

Probab=99.12  E-value=1.3e-10  Score=88.23  Aligned_cols=68  Identities=41%  Similarity=0.805  Sum_probs=63.7

Q ss_pred             ccccCCceeeeccccccCCcccccccccccCCCcccccceecCCCCCCHHHHHHHHHHHHHHHHhhhh
Q psy5270         278 QIMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKI  345 (352)
Q Consensus       278 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gcpp~~~~~~~~~~~~~~~~~~~~~  345 (352)
                      +.+.++++.+..|.|...+|.|.-+|..+++.++++|+|..+|||||+|.+|++++++..+++.++..
T Consensus        72 ea~PePKiViA~GaCa~~GGIf~~~~~v~gpvd~viPVDv~IPGCPP~P~~il~g~~~al~~~~k~~~  139 (148)
T COG3260          72 EAMPEPKIVIAVGACALSGGIFKDSYSVWGPVDKVIPVDVEIPGCPPRPEAILAGLVAALGKLEKKIH  139 (148)
T ss_pred             HhCCCCcEEEEEcccccCCceecccccccccccceeEeeeEcCCCCCCHHHHHHHHHHHHHHHHHhhh
Confidence            67789999999999999999999999999999999999999999999999999999998888877654

>PRK06411 NADH dehydrogenase subunit B; Validated

Probab=99.06  E-value=2.4e-10  Score=93.37  Aligned_cols=70  Identities=69%  Similarity=1.295  Sum_probs=64.6

Q ss_pred             ccccCCceeeeccccccCCcccccccccccCCCcccccceecCCCCCCHHHHHHHHHHHHHHHHhhhhhh
Q psy5270         278 QIMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQ  347 (352)
Q Consensus       278 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gcpp~~~~~~~~~~~~~~~~~~~~~~~  347 (352)
                      +.+..+.+.+..|.|...+|.+..+|+...|++.++|+|+++|||||.|++++.++..+++|+++++...
T Consensus        97 e~mp~pk~VIA~GaCA~~GGif~~sy~~~~gv~~~ipVDv~IPGCPP~Pe~il~~l~~l~~~i~~~~~~~  166 (183)
T PRK06411         97 DQMPEPKWVISMGSCANSGGMYHYSYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILKLQKKIRQSERER  166 (183)
T ss_pred             HHcCcCCeEEEEecccccCCcccCCCccccCcccccccceEeCCCCCCHHHHHHHHHHHHHHHhcccccc
Confidence            4557899999999999999999888999999999999999999999999999999999999999886653

>PRK14816 NADH dehydrogenase subunit B; Provisional

Probab=99.04  E-value=2.9e-10  Score=92.24  Aligned_cols=72  Identities=49%  Similarity=1.003  Sum_probs=65.9

Q ss_pred             ccccCCceeeeccccccCCcccccccccccCCCcccccceecCCCCCCHHHHHHHHHHHHHHHHhhhhhhhh
Q psy5270         278 QIMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQSW  349 (352)
Q Consensus       278 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gcpp~~~~~~~~~~~~~~~~~~~~~~~~~  349 (352)
                      +.+..+.+.+..|.|+..+|.+..+|+...|+++++|+|+++|||||.|.+++.++..+.+|+++.+-.|-.
T Consensus       104 e~~p~pK~VIAvGsCA~~GGif~~sy~~~~gvd~vIpVDv~IPGCPP~Pe~Il~~l~~L~~ki~~~~~~~~~  175 (182)
T PRK14816        104 DQMADPKYVIAVGGCAVSGGPFKKSYHVLNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVKIEKFFGGV  175 (182)
T ss_pred             HhcCCCCEEEEeccccccCCccccCCccCCCccccccccEEeeCcCCCHHHHHHHHHHHHHHhccccccccc
Confidence            456789999999999999999999999999999999999999999999999999999999999988765543

>PRK14815 NADH dehydrogenase subunit B; Provisional

Probab=99.04  E-value=3.3e-10  Score=91.84  Aligned_cols=69  Identities=51%  Similarity=1.083  Sum_probs=63.2

Q ss_pred             ccccCCceeeeccccccCCcccccccccccCCCcccccceecCCCCCCHHHHHHHHHHHHHHHHhhhhhh
Q psy5270         278 QIMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQ  347 (352)
Q Consensus       278 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gcpp~~~~~~~~~~~~~~~~~~~~~~~  347 (352)
                      +.+.++++.+..|.|...+|++. +|....|+++++|+|+++|||||.|++++.++.++.+++++.+.++
T Consensus        96 e~~p~pK~VIAvGsCA~~GGi~~-sy~~~~gv~~~ipVDv~IPGCPP~Pe~il~~l~~l~~~i~~~~~~~  164 (183)
T PRK14815         96 DQMPEPKWVIAMGACASSGGMYR-SYSVLQGVDRILPVDVYISGCPPRPEAILDALIKLQKKIDTERAAR  164 (183)
T ss_pred             HhCCCCCEEEEeccccccCCCcc-ccccccCccccccccEEecCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence            56688999999999999999985 8999999999999999999999999999999999999999876554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.04  E-value=2.2e-10  Score=77.99  Aligned_cols=59  Identities=47%  Similarity=0.759  Sum_probs=38.0

Q ss_pred             CCccEEEeeCCcCcccCc-cccCCCCCCEEEccCCcCcccc-cccCCCCCCcEEEccCCCC
Q psy5270           2 LYITRITLSHNKLKEIPP-GLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRL   60 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~-~l~~l~~L~~L~L~~N~l~~ip-~~l~~L~~L~~L~L~~N~l   60 (352)
                      ++|++|++++|+++.||+ .|.++++|++|++++|.++.+| ..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            456667777776666664 4566667777777777666553 3566666666666666653

...

>CHL00023 ndhK NADH dehydrogenase subunit K

Probab=99.03  E-value=3.4e-10  Score=94.26  Aligned_cols=67  Identities=51%  Similarity=1.006  Sum_probs=62.6

Q ss_pred             ccccCCceeeeccccccCCcccc-cccccccCCCcccccceecCCCCCCHHHHHHHHHHHHHHHHhhh
Q psy5270         278 QIMLEPRWVISMGSCANGGGYYH-YSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMK  344 (352)
Q Consensus       278 ~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gcpp~~~~~~~~~~~~~~~~~~~~  344 (352)
                      +.+.++++.+..|.|+..+|.+. .+|....|+++++|+|+++|||||.|++++.++..+++|+++..
T Consensus        94 eqmPePK~VIA~GaCA~sGGif~~dsy~~v~gvd~vIPVDv~IPGCPP~PeaIi~~l~~L~~ki~~~~  161 (225)
T CHL00023         94 EQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISREI  161 (225)
T ss_pred             HhcCCCCeEEEEccccccCCcccCCCcccccCccccceeeEEecCCCCCHHHHHHHHHHHHHHHhccc
Confidence            66789999999999999999996 89999999999999999999999999999999999999988764

>KOG0531|consensus

Probab=99.03  E-value=1.7e-10  Score=109.75  Aligned_cols=123  Identities=26%  Similarity=0.388  Sum_probs=100.6

Q ss_pred             CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCC
Q psy5270           2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYN   81 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N   81 (352)
                      ..++.+++..|.+.++-..+..+++|+.|++.+|++.++...+..+.+|++|++++|+++.+.. +..++.|+.|++++|
T Consensus        72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N  150 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGN  150 (414)
T ss_pred             HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc-hhhccchhhheeccC
Confidence            3466677888888887677888999999999999999887668889999999999999997754 566777999999999


Q ss_pred             CCCCCCCCCccccCccCcEEEccCCccccchhh-ccCcccHHHHHHhc
Q psy5270          82 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQIILETF  128 (352)
Q Consensus        82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~-~~nl~~L~~L~l~~  128 (352)
                      .++.   -..+..+.+|+.+++++|+++.++.. ...+.+++.+.++.
T Consensus       151 ~i~~---~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~  195 (414)
T KOG0531|consen  151 LISD---ISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGG  195 (414)
T ss_pred             cchh---ccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccC
Confidence            9975   34566689999999999999977654 56677777776654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.03  E-value=8.4e-11  Score=97.12  Aligned_cols=117  Identities=32%  Similarity=0.485  Sum_probs=39.2

Q ss_pred             eeCCcCcccCccccCCCCCCEEEccCCcCcccccccC-CCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCCCCCCC
Q psy5270           9 LSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLS-SLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQS   87 (352)
Q Consensus         9 Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~-~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~g~~   87 (352)
                      |..+.+.++|.. .+...+++|+|.+|.++.|. .++ .+.+|+.||+++|.++.++ .+..++.|+.|++++|+++.  
T Consensus         4 lt~~~i~~~~~~-~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~--   78 (175)
T PF14580_consen    4 LTANMIEQIAQY-NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISS--   78 (175)
T ss_dssp             ----------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S--
T ss_pred             cccccccccccc-cccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCc--
Confidence            344555555543 45667999999999999874 566 6889999999999999886 57889999999999999985  


Q ss_pred             CCCccc-cCccCcEEEccCCccccch--hhccCcccHHHHHHhcch
Q psy5270          88 LPGNFF-MLETLRALYLGDNDFEVLP--AEIGNLKNLQIILETFLP  130 (352)
Q Consensus        88 ~p~~~~-~l~~L~~L~l~~N~l~~ip--~~~~nl~~L~~L~l~~~p  130 (352)
                      +++.+. .+++|++|++++|++..+-  ..+..+++|+.+++..+|
T Consensus        79 i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen   79 ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             -CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred             cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence            665553 6899999999999998442  356677777777666544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.97  E-value=3.7e-10  Score=76.88  Aligned_cols=57  Identities=47%  Similarity=0.754  Sum_probs=27.4

Q ss_pred             CCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEccCCC
Q psy5270          26 NLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDLTYNN   82 (352)
Q Consensus        26 ~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls~N~   82 (352)
                      +|++|++++|+++.+|+ .|..+++|++|++++|+++.+|+ .|.++++|+.|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34555555555554432 44445555555555555554433 34444444444444443

...

>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit

Probab=98.96  E-value=1e-09  Score=86.66  Aligned_cols=65  Identities=68%  Similarity=1.349  Sum_probs=60.7

Q ss_pred             ccccCCceeeeccccccCCcccccccccccCCCcccccceecCCCCCCHHHHHHHHHHHHHHHHh
Q psy5270         278 QIMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKR  342 (352)
Q Consensus       278 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gcpp~~~~~~~~~~~~~~~~~~  342 (352)
                      +.+..+++.+..|.|...+|.+..+|+...++++++|+|+++|||||.|++++.++.++++|+++
T Consensus        80 e~~p~pk~VIA~GsCA~~GGi~~~~y~~~~~v~~~ipVDi~IPGCPp~Pe~i~~~l~~l~~~~~~  144 (145)
T TIGR01957        80 DQMPEPKWVISMGACANSGGMFHTSYSVVQGVDRIVPVDVYIPGCPPRPEALIYGLIKLQKKIKR  144 (145)
T ss_pred             HhccCCceEEEecceeecCCCccCCCccccCcccccccceEeCCCCCCHHHHHHHHHHHHHHhhc
Confidence            45677899999999999999998899999999999999999999999999999999999999875

This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.

>PRK14817 NADH dehydrogenase subunit B; Provisional

Probab=98.96  E-value=9.9e-10  Score=89.06  Aligned_cols=67  Identities=51%  Similarity=1.110  Sum_probs=61.4

Q ss_pred             ccccCCceeeeccccccCCcccccccccccCCCcccccceecCCCCCCHHHHHHHHHHHHHHHHhhhh
Q psy5270         278 QIMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKI  345 (352)
Q Consensus       278 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gcpp~~~~~~~~~~~~~~~~~~~~~  345 (352)
                      +.+..+++.+..|.|...+|++ .+|+...+++.++|+|+++|||||.|++++.++.++++|+++++.
T Consensus        98 e~~p~pK~VIAvGaCA~~GGi~-~~y~~~~gv~~vvpVDv~IPGCPP~Pe~il~~l~~l~~ki~~~~~  164 (181)
T PRK14817         98 EQMADPKWVMAFGVCASSGGFY-DNYATVQGIDRIIPVDVYVPGCPPRPEQVLDGIMLLQKKIQNQSH  164 (181)
T ss_pred             HHcccCCEEEEeccccccCCcC-CCcccccCccccceeeEEecCCCCCHHHHHHHHHHHHHHhhcCCc
Confidence            5567899999999999999987 579999999999999999999999999999999999999997653

>KOG3207|consensus

Probab=98.93  E-value=3.1e-10  Score=103.16  Aligned_cols=107  Identities=22%  Similarity=0.283  Sum_probs=77.7

Q ss_pred             ccCCCCCCEEEccCCcCcccc--cccCCCCCCcEEEccCCCCCcc---ccccCCCCCCCEEEccCCCCCCCCCCC-cccc
Q psy5270          21 LANLVNLEILTLFNNQIETLP--TSLSSLPKLRILNLGMNRLSSL---PRGFGAFPVLEVLDLTYNNLNEQSLPG-NFFM   94 (352)
Q Consensus        21 l~~l~~L~~L~L~~N~l~~ip--~~l~~L~~L~~L~L~~N~l~~i---p~~~~~l~~L~~L~Ls~N~l~g~~~p~-~~~~   94 (352)
                      -.++.+|++..|.+.....++  .....|++++.|||+.|-|+.+   -.-...+++|+.|+++.|++.- .... .-..
T Consensus       117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~-~~~s~~~~~  195 (505)
T KOG3207|consen  117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN-FISSNTTLL  195 (505)
T ss_pred             hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC-Cccccchhh
Confidence            456778888888888877554  3567788999999999988733   3335678899999999998864 2222 2234


Q ss_pred             CccCcEEEccCCccc--cchhhccCcccHHHHHHhc
Q psy5270          95 LETLRALYLGDNDFE--VLPAEIGNLKNLQIILETF  128 (352)
Q Consensus        95 l~~L~~L~l~~N~l~--~ip~~~~nl~~L~~L~l~~  128 (352)
                      ++.|+.|.++.+.|+  .+-.....++++..|++..
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~  231 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEA  231 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhc
Confidence            678899999999998  5555556677777776654

>PRK14820 NADH dehydrogenase subunit B; Provisional

Probab=98.91  E-value=2.1e-09  Score=87.38  Aligned_cols=65  Identities=52%  Similarity=1.112  Sum_probs=59.9

Q ss_pred             ccccCCceeeeccccccCCcccccccccccCCCcccccceecCCCCCCHHHHHHHHHHHHHHHHhh
Q psy5270         278 QIMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRM  343 (352)
Q Consensus       278 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gcpp~~~~~~~~~~~~~~~~~~~  343 (352)
                      +.+..+++.+..|.|...+|++ .+|....++++++|+|+++|||||.|++++.++.+++++++++
T Consensus        96 e~~p~pk~VIAvGaCA~~GGi~-~~y~~~~~v~~~ipVDv~IPGCPP~Pe~il~~l~~l~~~i~~~  160 (180)
T PRK14820         96 LQMAEPRWVVAVGACASSGGIF-DTYSVLQGIDRIIPVDVYVPGCPPRPEQIIDGVMRVQELVKNE  160 (180)
T ss_pred             HhcCCCCeEEEEecccccCCcc-ccccccccccccccccEEecCCCCCHHHHHHHHHHHHHHHhhc
Confidence            4557899999999999999998 4788999999999999999999999999999999999999876

>KOG3207|consensus

Probab=98.89  E-value=2.8e-10  Score=103.49  Aligned_cols=127  Identities=23%  Similarity=0.214  Sum_probs=71.6

Q ss_pred             CCccEEEeeCCcCcccC--ccccCCCCCCEEEccCCcCccc---ccccCCCCCCcEEEccCCCCCccccc--cCCCCCCC
Q psy5270           2 LYITRITLSHNKLKEIP--PGLANLVNLEILTLFNNQIETL---PTSLSSLPKLRILNLGMNRLSSLPRG--FGAFPVLE   74 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip--~~l~~l~~L~~L~L~~N~l~~i---p~~l~~L~~L~~L~L~~N~l~~ip~~--~~~l~~L~   74 (352)
                      ++|+...|.+......+  .....|++++.|||+.|-|...   -.-...|++|+.|+++.|++...-++  -..++.|+
T Consensus       121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK  200 (505)
T KOG3207|consen  121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK  200 (505)
T ss_pred             HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence            34556666655554333  2455677777777777776632   22345677777777777777622111  22456677


Q ss_pred             EEEccCCCCCCCCCCCccccCccCcEEEccCCc-cccchhhccCcccHHHHHHhc
Q psy5270          75 VLDLTYNNLNEQSLPGNFFMLETLRALYLGDND-FEVLPAEIGNLKNLQIILETF  128 (352)
Q Consensus        75 ~L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~-l~~ip~~~~nl~~L~~L~l~~  128 (352)
                      .|.|+.|.|+...+-.....+++|+.|+|..|. +..--.+...++.|+.|+++.
T Consensus       201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~  255 (505)
T KOG3207|consen  201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSN  255 (505)
T ss_pred             eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccC
Confidence            777777777654444444556677777777774 211111223345566666554

>KOG1259|consensus

Probab=98.89  E-value=1.9e-10  Score=100.03  Aligned_cols=112  Identities=25%  Similarity=0.304  Sum_probs=97.2

Q ss_pred             CCCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccC
Q psy5270           1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTY   80 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~   80 (352)
                      ++.++.|++|+|.+.++-. ++.+.+|+.|||++|.++++-.+=.+|-+++.|.|+.|.+.++. .++.+-+|..||+++
T Consensus       306 ~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~  383 (490)
T KOG1259|consen  306 APKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSS  383 (490)
T ss_pred             ccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhh-hhHhhhhheeccccc
Confidence            3678999999999998766 88999999999999999988776677888999999999998663 478889999999999


Q ss_pred             CCCCCCCCCCccccCccCcEEEccCCccccchhh
Q psy5270          81 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE  114 (352)
Q Consensus        81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~  114 (352)
                      |++....--..+|+++.|+.+.|.+|.++.+|..
T Consensus       384 N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY  417 (490)
T KOG1259|consen  384 NQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY  417 (490)
T ss_pred             cchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence            9997533455799999999999999999987753

>KOG4579|consensus

Probab=98.83  E-value=1.3e-10  Score=89.69  Aligned_cols=109  Identities=27%  Similarity=0.371  Sum_probs=82.1

Q ss_pred             ccEEEeeCCcCcccCcc---ccCCCCCCEEEccCCcCcccccccCCC-CCCcEEEccCCCCCccccccCCCCCCCEEEcc
Q psy5270           4 ITRITLSHNKLKEIPPG---LANLVNLEILTLFNNQIETLPTSLSSL-PKLRILNLGMNRLSSLPRGFGAFPVLEVLDLT   79 (352)
Q Consensus         4 L~~L~Ls~N~l~~ip~~---l~~l~~L~~L~L~~N~l~~ip~~l~~L-~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls   79 (352)
                      +..+||+++++-.|++.   +.....|...+|++|.|..+|+.|... +.++.|+|++|+++.+|+++..++.|+.|+++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~  108 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR  108 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence            45677888877766665   334455666688888888888777654 46888888888888888888888888888888


Q ss_pred             CCCCCCCCCCCccccCccCcEEEccCCccccchhh
Q psy5270          80 YNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE  114 (352)
Q Consensus        80 ~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~  114 (352)
                      .|.+..  .|..|..|.+|-.|+..+|.+.+||-.
T Consensus       109 ~N~l~~--~p~vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  109 FNPLNA--EPRVIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             cCcccc--chHHHHHHHhHHHhcCCCCccccCcHH
Confidence            888874  677777788888888888888777754

>PRK14819 NADH dehydrogenase subunit B; Provisional

Probab=98.83  E-value=3.9e-09  Score=89.43  Aligned_cols=74  Identities=49%  Similarity=1.012  Sum_probs=63.7

Q ss_pred             ccccCCceeeeccccccCCcccccccccccCCCcccccceecCCCCCCHHHHHHHHHHHHHHHHhhhh-hhhhhh
Q psy5270         278 QIMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKI-LQSWYR  351 (352)
Q Consensus       278 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gcpp~~~~~~~~~~~~~~~~~~~~~-~~~~~~  351 (352)
                      +.+..+++.+..|.|...+|.+..+|+...+++.++|+|+++|||||.|.+++.++.++++++...+. --.||+
T Consensus        94 eqmP~PK~VIAvGaCA~~GGIf~~sY~v~~gId~vIPVDv~IPGCPP~Pe~Il~gLl~L~~ki~~d~~~Rp~~~~  168 (264)
T PRK14819         94 NQMPEPRYVISMGACATSGGPFRDGYNVLRGIDLLIPVDVYIPGCPPRPEALLHALMTLQKQIDAQSLGRVRWYG  168 (264)
T ss_pred             HhccCCCeEEEEccccccCCccccCCCccCCccccccccEEecCCCCCHHHHHHHHHHHHhhcccccccCccccc
Confidence            55678899999999999999999899999999999999999999999999999999999987754331 224554

>PRK14814 NADH dehydrogenase subunit B; Provisional

Probab=98.80  E-value=8.3e-09  Score=84.24  Aligned_cols=66  Identities=52%  Similarity=1.090  Sum_probs=60.0

Q ss_pred             ccccCCceeeeccccccCCcccccccccccCCCcccccceecCCCCCCHHHHHHHHHHHHHHHHhhh
Q psy5270         278 QIMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMK  344 (352)
Q Consensus       278 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gcpp~~~~~~~~~~~~~~~~~~~~  344 (352)
                      +.+..+.+.+..|.|...+|++. .|....|++.++|+|+++|||||.|.+++.++.++.+++++..
T Consensus        96 eqmp~pk~VIAvGsCA~~GGi~~-~y~~~~gv~~vvpVDv~IPGCPP~Pe~il~~l~~L~~~i~~~~  161 (186)
T PRK14814         96 DQMAEPKFVISVGACASSGGMFH-TYGVLQGVDRILPVDVYVPGCPPRPEAILDALVKLQTKLKTQG  161 (186)
T ss_pred             HhcCCCCeEEEeccccccCCccC-cCCCCcCccccccccEEecCCCCCHHHHHHHHHHHHHHHhccc
Confidence            55678999999999999999986 5888899999999999999999999999999999999988753

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.66  E-value=2.3e-08  Score=62.69  Aligned_cols=38  Identities=42%  Similarity=0.719  Sum_probs=19.9

Q ss_pred             CccEEEeeCCcCcccCccccCCCCCCEEEccCCcCccc
Q psy5270           3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETL   40 (352)
Q Consensus         3 ~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~i   40 (352)
                      +|++|++++|+|+.+|+.+++|++|++|++++|+++.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            45555555555555555555555555555555555544

...

>KOG4658|consensus

Probab=98.66  E-value=2.6e-08  Score=101.90  Aligned_cols=118  Identities=31%  Similarity=0.431  Sum_probs=61.5

Q ss_pred             cEEEeeCCcCcccCccccCCCCCCEEEccCCc--Ccccccc-cCCCCCCcEEEccCC-CCCccccccCCCCCCCEEEccC
Q psy5270           5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQ--IETLPTS-LSSLPKLRILNLGMN-RLSSLPRGFGAFPVLEVLDLTY   80 (352)
Q Consensus         5 ~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~--l~~ip~~-l~~L~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~Ls~   80 (352)
                      +.+.+-+|++..++....+ +.|+.|-+..|.  +..++.. |..|+.|++|||++| .+..+|.+++++-+|++|++++
T Consensus       526 rr~s~~~~~~~~~~~~~~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~  604 (889)
T KOG4658|consen  526 RRMSLMNNKIEHIAGSSEN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD  604 (889)
T ss_pred             eEEEEeccchhhccCCCCC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC
Confidence            3444445555555544332 245555555554  3344332 444566666666655 3445666666666666666666


Q ss_pred             CCCCCCCCCCccccCccCcEEEccCCccc-cchhhccCcccHHHHH
Q psy5270          81 NNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQIIL  125 (352)
Q Consensus        81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l~-~ip~~~~nl~~L~~L~  125 (352)
                      ..++  .+|..++++++|.+|++..+... .+|.....+++|+++.
T Consensus       605 t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~  648 (889)
T KOG4658|consen  605 TGIS--HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLR  648 (889)
T ss_pred             CCcc--ccchHHHHHHhhheeccccccccccccchhhhcccccEEE
Confidence            6555  35666666666666666555433 3333344455555443

>KOG0531|consensus

Probab=98.61  E-value=1.5e-08  Score=96.49  Aligned_cols=102  Identities=27%  Similarity=0.412  Sum_probs=78.4

Q ss_pred             CCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCCCCCCCCCCccccCccCcEEE
Q psy5270          23 NLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALY  102 (352)
Q Consensus        23 ~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L~  102 (352)
                      .+..++.+.+..|.+.++-..++.+++|+.+++.+|++..+...+..+++|++|++++|.++.  + ..+..++.|+.|+
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~--i-~~l~~l~~L~~L~  146 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITK--L-EGLSTLTLLKELN  146 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccc--c-cchhhccchhhhe
Confidence            456677777888888875556788889999999999999887767888999999999999875  2 2466677799999


Q ss_pred             ccCCccccchhhccCcccHHHHHHhc
Q psy5270         103 LGDNDFEVLPAEIGNLKNLQIILETF  128 (352)
Q Consensus       103 l~~N~l~~ip~~~~nl~~L~~L~l~~  128 (352)
                      +++|.++.++ .+..+..|+.+++++
T Consensus       147 l~~N~i~~~~-~~~~l~~L~~l~l~~  171 (414)
T KOG0531|consen  147 LSGNLISDIS-GLESLKSLKLLDLSY  171 (414)
T ss_pred             eccCcchhcc-CCccchhhhcccCCc
Confidence            9999998664 344466777666654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.59  E-value=5.6e-08  Score=60.97  Aligned_cols=39  Identities=54%  Similarity=0.726  Sum_probs=22.4

Q ss_pred             CCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccc
Q psy5270          26 NLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP   64 (352)
Q Consensus        26 ~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip   64 (352)
                      +|++|++++|+++.+|+.+++|++|+.|++++|+++.++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            456666666666666555666666666666666665443

...

>KOG1859|consensus

Probab=98.54  E-value=2.3e-09  Score=103.26  Aligned_cols=124  Identities=27%  Similarity=0.293  Sum_probs=98.2

Q ss_pred             CccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEccCC
Q psy5270           3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYN   81 (352)
Q Consensus         3 ~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~Ls~N   81 (352)
                      .|...+.++|.+..+..++.-++.|+.|+|++|+|+++. .+..|++|++|||++|.+..+|.- ...+. |+.|.+++|
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN  242 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN  242 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence            356678888988888888888889999999999999765 788899999999999999988853 34444 999999999


Q ss_pred             CCCCCCCCCccccCccCcEEEccCCccccch--hhccCcccHHHHHHhcchh
Q psy5270          82 NLNEQSLPGNFFMLETLRALYLGDNDFEVLP--AEIGNLKNLQIILETFLPD  131 (352)
Q Consensus        82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip--~~~~nl~~L~~L~l~~~p~  131 (352)
                      .++.   -..+.+|.+|+.||++.|-+++..  .-++.+..|+.|.+..+|-
T Consensus       243 ~l~t---L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  243 ALTT---LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             HHHh---hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            8864   335788999999999999887432  2456677888888776553

>KOG4579|consensus

Probab=98.53  E-value=4.8e-09  Score=81.22  Aligned_cols=100  Identities=24%  Similarity=0.386  Sum_probs=84.7

Q ss_pred             CCCEEEccCCcCcccccccC---CCCCCcEEEccCCCCCccccccCC-CCCCCEEEccCCCCCCCCCCCccccCccCcEE
Q psy5270          26 NLEILTLFNNQIETLPTSLS---SLPKLRILNLGMNRLSSLPRGFGA-FPVLEVLDLTYNNLNEQSLPGNFFMLETLRAL  101 (352)
Q Consensus        26 ~L~~L~L~~N~l~~ip~~l~---~L~~L~~L~L~~N~l~~ip~~~~~-l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L  101 (352)
                      .+..+||+++++..|++...   ....|...+|++|.|..+|+.|.. ++.++.|++++|.++.  +|.++..++.|+.|
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd--vPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD--VPEELAAMPALRSL  105 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh--chHHHhhhHHhhhc
Confidence            46778999999887776554   455566779999999999998765 5689999999999984  89999999999999


Q ss_pred             EccCCccccchhhccCcccHHHHHHh
Q psy5270         102 YLGDNDFEVLPAEIGNLKNLQIILET  127 (352)
Q Consensus       102 ~l~~N~l~~ip~~~~nl~~L~~L~l~  127 (352)
                      +++.|.|...|..|..+.++..|+..
T Consensus       106 Nl~~N~l~~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen  106 NLRFNPLNAEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             ccccCccccchHHHHHHHhHHHhcCC
Confidence            99999999999988888888777644

>PRK13292 trifunctional NADH dehydrogenase I subunit B/C/D; Provisional

Probab=98.50  E-value=1.5e-07  Score=94.44  Aligned_cols=67  Identities=57%  Similarity=1.158  Sum_probs=62.5

Q ss_pred             ccccCCceeeeccccccCCcccccccccccCCCcccccceecCCCCCCHHHHHHHHHHHHHHHHhhhh
Q psy5270         278 QIMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKI  345 (352)
Q Consensus       278 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gcpp~~~~~~~~~~~~~~~~~~~~~  345 (352)
                      +.+..+++.+..|.|++.+|++ .+|+.+.|++.++|+|+++|||||.|++++.++..+++|+++.+.
T Consensus        85 ~~~p~pk~via~G~Ca~~GG~~-~~y~~~~g~~~~ipVDv~iPGCPP~Pe~i~~~i~~l~~~~~~~~~  151 (788)
T PRK13292         85 EQMAEPKWVISMGSCANSGGMY-DVYSVVQGVNQILPVDVYIPGCPPRPEAFLQGLMLLQEKIRREER  151 (788)
T ss_pred             HhCCCCCEEEEecccccCCCCc-CccccccCcCCcccccEEccCCCCCHHHHHHHHHHHHHHhhcCcc
Confidence            6678999999999999999998 689999999999999999999999999999999999999987664

>KOG1859|consensus

Probab=98.45  E-value=4.2e-09  Score=101.44  Aligned_cols=105  Identities=33%  Similarity=0.459  Sum_probs=87.7

Q ss_pred             CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccC
Q psy5270           2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTY   80 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~   80 (352)
                      +.|+.|||++|+++.+- .+..|+.|++|||++|++..+|. ....+. |+.|.+++|-++++- ++.++.+|+.||+++
T Consensus       187 ~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~-gie~LksL~~LDlsy  263 (1096)
T KOG1859|consen  187 PALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLR-GIENLKSLYGLDLSY  263 (1096)
T ss_pred             HHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhh-hHHhhhhhhccchhH
Confidence            56889999999999665 77889999999999999998886 444454 999999999999774 478999999999999


Q ss_pred             CCCCCCCCCCccccCccCcEEEccCCccc
Q psy5270          81 NNLNEQSLPGNFFMLETLRALYLGDNDFE  109 (352)
Q Consensus        81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l~  109 (352)
                      |-+.+-.--..++.|..|+.|+|.+|.+-
T Consensus       264 Nll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  264 NLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            99987222234677889999999999984

>KOG1909|consensus

Probab=98.44  E-value=6.6e-08  Score=85.99  Aligned_cols=124  Identities=27%  Similarity=0.352  Sum_probs=66.8

Q ss_pred             CCccEEEeeCCcCc-ccCcc----ccCCCCCCEEEccCCcCcccc--------------cccCCCCCCcEEEccCCCCCc
Q psy5270           2 LYITRITLSHNKLK-EIPPG----LANLVNLEILTLFNNQIETLP--------------TSLSSLPKLRILNLGMNRLSS   62 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~-~ip~~----l~~l~~L~~L~L~~N~l~~ip--------------~~l~~L~~L~~L~L~~N~l~~   62 (352)
                      ++|++||||+|-|. .-++.    +.+++.|++|+|.+|.+...-              .-.++=++|+++..+.|.+..
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence            35667777777665 32222    455666777777777665221              112344556677777776653


Q ss_pred             cc-----cccCCCCCCCEEEccCCCCCCCC---CCCccccCccCcEEEccCCccc-----cchhhccCcccHHHHH
Q psy5270          63 LP-----RGFGAFPVLEVLDLTYNNLNEQS---LPGNFFMLETLRALYLGDNDFE-----VLPAEIGNLKNLQIIL  125 (352)
Q Consensus        63 ip-----~~~~~l~~L~~L~Ls~N~l~g~~---~p~~~~~l~~L~~L~l~~N~l~-----~ip~~~~nl~~L~~L~  125 (352)
                      -+     ..|...+.|+.+.++.|.+....   +-..+..+++|++|||.+|-|+     .+-..+..++.|+.+.
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~  247 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN  247 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence            22     23445566677777776653200   1123456667777777777766     1233444444444443

>KOG4658|consensus

Probab=98.40  E-value=1.3e-07  Score=96.88  Aligned_cols=122  Identities=33%  Similarity=0.491  Sum_probs=99.0

Q ss_pred             CCccEEEeeCCc--CcccCcc-ccCCCCCCEEEccCCc-CcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEE
Q psy5270           2 LYITRITLSHNK--LKEIPPG-LANLVNLEILTLFNNQ-IETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLD   77 (352)
Q Consensus         2 ~~L~~L~Ls~N~--l~~ip~~-l~~l~~L~~L~L~~N~-l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~   77 (352)
                      +.|+.|-+..|.  +..++.+ |..++.|++|||++|. +.++|.+++.|-+|++|++++..++.+|.+++++.+|.+|+
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Ln  624 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLN  624 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheec
Confidence            467888888886  5677765 6779999999999985 56999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCccccCccCcEEEccCCccc---cchhhccCcccHHHH
Q psy5270          78 LTYNNLNEQSLPGNFFMLETLRALYLGDNDFE---VLPAEIGNLKNLQII  124 (352)
Q Consensus        78 Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~---~ip~~~~nl~~L~~L  124 (352)
                      +..+.-.. .+|.....+++|++|.+..-...   ..-..+.++..|+.+
T Consensus       625 l~~~~~l~-~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~l  673 (889)
T KOG4658|consen  625 LEVTGRLE-SIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENL  673 (889)
T ss_pred             cccccccc-cccchhhhcccccEEEeeccccccchhhHHhhhcccchhhh
Confidence            99998665 56777778999999999766533   122344455555544

>KOG2982|consensus

Probab=98.25  E-value=3.1e-07  Score=80.23  Aligned_cols=222  Identities=20%  Similarity=0.211  Sum_probs=115.9

Q ss_pred             CCEEEccCCcCcccc--cccC-CCCCCcEEEccCCCCCc---cccccCCCCCCCEEEccCCCCCCCCCCCccccCccCcE
Q psy5270          27 LEILTLFNNQIETLP--TSLS-SLPKLRILNLGMNRLSS---LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRA  100 (352)
Q Consensus        27 L~~L~L~~N~l~~ip--~~l~-~L~~L~~L~L~~N~l~~---ip~~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~  100 (352)
                      ++.|-+.++.+..+-  ..|+ ..+.++.+||.+|+++.   |-.-+.+++.|++|+++.|++.. .|-..-..+.+|+.
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s-~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS-DIKSLPLPLKNLRV  125 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC-ccccCcccccceEE
Confidence            334445555444332  2333 35667888888888873   33345677888888888888764 22221134567888


Q ss_pred             EEccCCccc--cchhhccCcccHHHHHHhcchhhHhhcCc-eEeeccccccccCCCCccccccchhhhhhhhHHhHHHHH
Q psy5270         101 LYLGDNDFE--VLPAEIGNLKNLQIILETFLPDMMEKNRG-HIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELR  177 (352)
Q Consensus       101 L~l~~N~l~--~ip~~~~nl~~L~~L~l~~~p~~~~~~~g-~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~  177 (352)
                      |-|.+..+.  ..-..+.+++.++.+.++.+....-...- -+-.++        |.........+.             
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s--------~~v~tlh~~~c~-------------  184 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWS--------TEVLTLHQLPCL-------------  184 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccc--------hhhhhhhcCCcH-------------
Confidence            888887776  45556677777777766642110000000 000000        000000000000             


Q ss_pred             HHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhccccccccCCCchhhhhHHhHhh
Q psy5270         178 EDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRAL  257 (352)
Q Consensus       178 ~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L  257 (352)
                      .....+.+++.-++|..      ..+.+..+.+.+..    .....+.++++..|+|+.|++..-.--+.+..+++|..|
T Consensus       185 ~~~w~~~~~l~r~Fpnv------~sv~v~e~PlK~~s----~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dl  254 (418)
T KOG2982|consen  185 EQLWLNKNKLSRIFPNV------NSVFVCEGPLKTES----SEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDL  254 (418)
T ss_pred             HHHHHHHHhHHhhcccc------hheeeecCcccchh----hcccCCCCCcchhhhhcccccccHHHHHHHcCCchhhee
Confidence            01112223333333321      11112222222111    122334444557899999999642223457788999999


Q ss_pred             hCCCCcce-ecch----h--hhcccccccc
Q psy5270         258 YLGDNDFE-VLPA----E--IGNLKNLQIM  280 (352)
Q Consensus       258 ~Ls~N~l~-~iP~----~--l~~l~~L~~l  280 (352)
                      .+++|.+. .+-.    .  ++.|+++++|
T Consensus       255 Rv~~~Pl~d~l~~~err~llIaRL~~v~vL  284 (418)
T KOG2982|consen  255 RVSENPLSDPLRGGERRFLLIARLTKVQVL  284 (418)
T ss_pred             eccCCcccccccCCcceEEEEeeccceEEe
Confidence            99999987 4432    2  6889999987

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.95  E-value=2.4e-05  Score=72.78  Aligned_cols=98  Identities=22%  Similarity=0.341  Sum_probs=64.1

Q ss_pred             CCccEEEeeCCcCcccCccccCCCCCCEEEccC-CcCcccccccCCCCCCcEEEccCC-CCCccccccCCCCCCCEEEcc
Q psy5270           2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFN-NQIETLPTSLSSLPKLRILNLGMN-RLSSLPRGFGAFPVLEVLDLT   79 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~-N~l~~ip~~l~~L~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~Ls   79 (352)
                      .+++.|++++|.++.+| .+  ..+|++|.+++ +.++.+|..+.  ++|+.|++++| ++..+|+.      |+.|+++
T Consensus        52 ~~l~~L~Is~c~L~sLP-~L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~  120 (426)
T PRK15386         52 RASGRLYIKDCDIESLP-VL--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VRSLEIK  120 (426)
T ss_pred             cCCCEEEeCCCCCcccC-CC--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cceEEeC
Confidence            56889999999888888 23  24689999987 45667776553  57888999888 66677764      4555555


Q ss_pred             CCCCCC-CCCCCccccC------------------ccCcEEEccCCcccc
Q psy5270          80 YNNLNE-QSLPGNFFML------------------ETLRALYLGDNDFEV  110 (352)
Q Consensus        80 ~N~l~g-~~~p~~~~~l------------------~~L~~L~l~~N~l~~  110 (352)
                      .|.... ..+|.++..|                  ++|++|++++|....
T Consensus       121 ~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~  170 (426)
T PRK15386        121 GSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII  170 (426)
T ss_pred             CCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc
Confidence            544211 1355444333                  367777777776543

>KOG1644|consensus

Probab=97.92  E-value=8.5e-06  Score=67.52  Aligned_cols=121  Identities=25%  Similarity=0.283  Sum_probs=83.4

Q ss_pred             EEEeeCCcCcccCccccC-CCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCC-CCCCCEEEccCCCC
Q psy5270           6 RITLSHNKLKEIPPGLAN-LVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGA-FPVLEVLDLTYNNL   83 (352)
Q Consensus         6 ~L~Ls~N~l~~ip~~l~~-l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~-l~~L~~L~Ls~N~l   83 (352)
                      .+||.+.++..+.. ++. +.+...+||++|.+..++ .|..+++|..|.++.|.++.|-+.++. +++|..|.|.+|++
T Consensus        23 e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi  100 (233)
T KOG1644|consen   23 ELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI  100 (233)
T ss_pred             ccccccccccchhh-ccccccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence            45666665543332 332 346788899999887653 367788899999999999988777655 56789999999988


Q ss_pred             CCCCCCCccccCccCcEEEccCCccccchh----hccCcccHHHHHHhc
Q psy5270          84 NEQSLPGNFFMLETLRALYLGDNDFEVLPA----EIGNLKNLQIILETF  128 (352)
Q Consensus        84 ~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~----~~~nl~~L~~L~l~~  128 (352)
                      ....--.-+..+++|++|.+-+|..+.-..    .+..+++|+.||...
T Consensus       101 ~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  101 QELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             hhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            641112245677889999998888874332    356667777766553

>KOG1644|consensus

Probab=97.59  E-value=0.00013  Score=60.58  Aligned_cols=106  Identities=28%  Similarity=0.380  Sum_probs=81.6

Q ss_pred             CccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCC-CCCCcEEEccCCCCCcccc--ccCCCCCCCEEEcc
Q psy5270           3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSS-LPKLRILNLGMNRLSSLPR--GFGAFPVLEVLDLT   79 (352)
Q Consensus         3 ~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~-L~~L~~L~L~~N~l~~ip~--~~~~l~~L~~L~Ls   79 (352)
                      +...+||++|.+..++ .|..+..|..|.|.+|+++.|-+.+.. +++|..|.|.+|++..+-+  -+..+++|+.|.+-
T Consensus        43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence            4567899999987554 356788999999999999988665654 6779999999999986533  36788999999999


Q ss_pred             CCCCCCCCC--CCccccCccCcEEEccCCccc
Q psy5270          80 YNNLNEQSL--PGNFFMLETLRALYLGDNDFE  109 (352)
Q Consensus        80 ~N~l~g~~~--p~~~~~l~~L~~L~l~~N~l~  109 (352)
                      +|..+...-  --.+..+++|+.||...=...
T Consensus       122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~  153 (233)
T KOG1644|consen  122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK  153 (233)
T ss_pred             CCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence            999875110  114678899999997665443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.58  E-value=0.00015  Score=67.60  Aligned_cols=93  Identities=30%  Similarity=0.450  Sum_probs=67.3

Q ss_pred             CccEEEeeC-CcCcccCccccCCCCCCEEEccCC-cCcccccccCCCCCCcEEEccCCCC---CccccccCCC-------
Q psy5270           3 YITRITLSH-NKLKEIPPGLANLVNLEILTLFNN-QIETLPTSLSSLPKLRILNLGMNRL---SSLPRGFGAF-------   70 (352)
Q Consensus         3 ~L~~L~Ls~-N~l~~ip~~l~~l~~L~~L~L~~N-~l~~ip~~l~~L~~L~~L~L~~N~l---~~ip~~~~~l-------   70 (352)
                      +|+.|++++ +.++.+|..+.  .+|++|++++| .+..+|+.      |+.|+++.|..   ..+|+++..|       
T Consensus        73 sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~~n~~~~L~~LPssLk~L~I~~~n~  144 (426)
T PRK15386         73 ELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VRSLEIKGSATDSIKNVPNGLTSLSINSYNP  144 (426)
T ss_pred             CCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cceEEeCCCCCcccccCcchHhheecccccc
Confidence            689999987 56678887664  58999999998 66677764      55666666653   4667654333       


Q ss_pred             -----------CCCCEEEccCCCCCCCCCCCccccCccCcEEEccCCc
Q psy5270          71 -----------PVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDND  107 (352)
Q Consensus        71 -----------~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~  107 (352)
                                 ++|+.|++++|...  .+|..+.  .+|+.|+++.|.
T Consensus       145 ~~~~~lp~~LPsSLk~L~Is~c~~i--~LP~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        145 ENQARIDNLISPSLKTLSLTGCSNI--ILPEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             ccccccccccCCcccEEEecCCCcc--cCccccc--ccCcEEEecccc
Confidence                       37999999999865  3565444  589999998873

>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma

Probab=97.44  E-value=0.00015  Score=62.89  Aligned_cols=58  Identities=31%  Similarity=0.632  Sum_probs=48.0

Q ss_pred             cCCceeeeccccccCCcccccccc---------cccCCCcccccceecCCCCCCHHHHHHHHHHHHH
Q psy5270         281 LEPRWVISMGSCANGGGYYHYSYS---------VVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQK  338 (352)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~gcpp~~~~~~~~~~~~~~  338 (352)
                      ..+++.+..|.|...+|.+..++.         .+.+.+.++++|+++|||||.|..++..|.++..
T Consensus        76 ~~ak~vVA~GtCA~~GGi~~~~~~~~~~~~~~~~~~~~~~~V~vdi~IpGCPp~p~~i~~~l~~ll~  142 (228)
T TIGR03294        76 EKAKVVVALGACAATGNFTRYSRGGQQAQPQHESFVPITDVIDVDLAIPGCPPSPEAIRNVCVALLN  142 (228)
T ss_pred             ccCCEEEEeecccccCCcccccCCcccCCCCCCCCcCHHHcccCCEEeeCCCCCHHHHHHHHHHHHc
Confidence            467889999999999998766543         3555677788999999999999999999988653

This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.

>PF01058 Oxidored_q6: NADH ubiquinone oxidoreductase, 20 Kd subunit; InterPro: IPR006137 NADH:ubiquinone oxidoreductase (complex I) (1

Probab=97.41  E-value=5e-05  Score=59.97  Aligned_cols=56  Identities=34%  Similarity=0.629  Sum_probs=40.4

Q ss_pred             cCCceeeeccccccCCccccccccc-----ccCCCcccccceecCCCCCCHHHHHHHHHHH
Q psy5270         281 LEPRWVISMGSCANGGGYYHYSYSV-----VRGCDRIIPVDIYVPGCPPTAEALMYGILQL  336 (352)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~gcpp~~~~~~~~~~~~  336 (352)
                      ...+..+..|.|...+|.+....+.     ..++...+++|+++|||||.|..++..|.++
T Consensus        71 ~~a~~vIAvGtCA~~GGi~~~~~~~~~~~~~~~~~~~~~VDi~IpGCPp~pd~i~~~l~~L  131 (131)
T PF01058_consen   71 PKAKAVIAVGTCASFGGIPAARNNPSVGDSVGPLLEVVPVDINIPGCPPHPDWILETLLAL  131 (131)
T ss_dssp             GCSSEEEEEHHHHHH-TGGGSTTSTTEEE-HHHHHGCS-ECEEE-SSS--HHHHHHHHHHH
T ss_pred             cCCceeEcCCCccccCCcccccccccccccccCcCCCccEEEEeeCCCCCHHHHHHHHhhC
Confidence            5778899999999999988554422     3345666899999999999999999988764

6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 20 kDa (in mammals) [], which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 4Fe-4S iron-sulphur cluster. The 20 kDa subunit has been found to be nuclear encoded, as a precursor form with a transit peptide in mammals, and in Neurospora crassa. It is and chloroplast encoded in various higher plants (gene ndhK or psbG).; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0048038 quinone binding, 0051539 4 iron, 4 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 3MYR_E 3RGW_S 2FUG_F 3IAS_6 3I9V_F 3IAM_F 2YBB_6 3M9S_F 2FRV_G 1YQ9_B ....

>KOG3665|consensus

Probab=97.39  E-value=0.00012  Score=73.42  Aligned_cols=105  Identities=21%  Similarity=0.260  Sum_probs=55.8

Q ss_pred             CCccEEEeeCCcCc--ccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCcc--ccccCCCCCCCEEE
Q psy5270           2 LYITRITLSHNKLK--EIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL--PRGFGAFPVLEVLD   77 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~--~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~i--p~~~~~l~~L~~L~   77 (352)
                      |.|+.|.+++=.+.  ++-.-..++++|+.||+|+..++.+ ..+++|++|++|.+.+=.|..-  -.++.++++|++||
T Consensus       148 PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLD  226 (699)
T KOG3665|consen  148 PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLD  226 (699)
T ss_pred             cccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeee
Confidence            44555555544442  2222234455566666666555544 4455566666665555444421  12356677777777


Q ss_pred             ccCCCCCCCCCCCc-------cccCccCcEEEccCCccc
Q psy5270          78 LTYNNLNEQSLPGN-------FFMLETLRALYLGDNDFE  109 (352)
Q Consensus        78 Ls~N~l~g~~~p~~-------~~~l~~L~~L~l~~N~l~  109 (352)
                      +|..+...  .+.-       -..|++|+.||.+++.+.
T Consensus       227 IS~~~~~~--~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  227 ISRDKNND--DTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             cccccccc--chHHHHHHHHhcccCccccEEecCCcchh
Confidence            77666543  1211       123567777777776665

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.33  E-value=0.00078  Score=52.72  Aligned_cols=111  Identities=18%  Similarity=0.304  Sum_probs=44.2

Q ss_pred             CccEEEeeCCcCcccCcc-ccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEcc
Q psy5270           3 YITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDLT   79 (352)
Q Consensus         3 ~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls   79 (352)
                      +|+.+.+.. .+..|++. |.++++|+.+.+.++ +..++. .+.++++++.+.+.. .+..++. .|..+++|+.+++.
T Consensus        13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~   89 (129)
T PF13306_consen   13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP   89 (129)
T ss_dssp             T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred             CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence            455566553 45555543 555656666666554 555543 455555666666654 4444443 24456666666665


Q ss_pred             CCCCCCCCCCCccccCccCcEEEccCCccccchh-hccCccc
Q psy5270          80 YNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKN  120 (352)
Q Consensus        80 ~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~  120 (352)
                      .+ +.. .-...|.++ +|+.+.+.. .++.|+. .|.++.+
T Consensus        90 ~~-~~~-i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~  127 (129)
T PF13306_consen   90 SN-ITE-IGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTK  127 (129)
T ss_dssp             TT--BE-EHTTTTTT--T--EEE-TT-B-SS----GGG----
T ss_pred             cc-ccE-EchhhhcCC-CceEEEECC-CccEECCcccccccc
Confidence            54 332 113344444 666666554 3444433 4444433

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.30  E-value=9.8e-05  Score=38.67  Aligned_cols=20  Identities=35%  Similarity=0.612  Sum_probs=10.9

Q ss_pred             ccEEEeeCCcCcccCccccC
Q psy5270           4 ITRITLSHNKLKEIPPGLAN   23 (352)
Q Consensus         4 L~~L~Ls~N~l~~ip~~l~~   23 (352)
                      |++||+++|+|++||++|++
T Consensus         2 L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEESEEGTTTTT
T ss_pred             ccEEECCCCcCEeCChhhcC
Confidence            55555555555555555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2982|consensus

Probab=97.29  E-value=6.6e-05  Score=65.98  Aligned_cols=87  Identities=26%  Similarity=0.283  Sum_probs=67.0

Q ss_pred             CCCCCCEEEccCCcCc---ccccccCCCCCCcEEEccCCCCC-ccccccCCCCCCCEEEccCCCCCCCCCCCccccCccC
Q psy5270          23 NLVNLEILTLFNNQIE---TLPTSLSSLPKLRILNLGMNRLS-SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETL   98 (352)
Q Consensus        23 ~l~~L~~L~L~~N~l~---~ip~~l~~L~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L   98 (352)
                      .++.++++||.+|.++   +|-.-+.+|+.|+.|+++.|.+. .|-..-....+|++|-|.+-.+.....-..+..++.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            4678999999999998   56666788999999999999998 3322114567899999998888764444556678888


Q ss_pred             cEEEccCCccc
Q psy5270          99 RALYLGDNDFE  109 (352)
Q Consensus        99 ~~L~l~~N~l~  109 (352)
                      ++|.++.|++.
T Consensus       149 telHmS~N~~r  159 (418)
T KOG2982|consen  149 TELHMSDNSLR  159 (418)
T ss_pred             hhhhhccchhh
Confidence            99999999665

>KOG3665|consensus

Probab=97.26  E-value=7.1e-05  Score=75.13  Aligned_cols=124  Identities=20%  Similarity=0.271  Sum_probs=91.2

Q ss_pred             CccEEEeeCCcC-c-ccCccccC-CCCCCEEEccCCcCc--ccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEE
Q psy5270           3 YITRITLSHNKL-K-EIPPGLAN-LVNLEILTLFNNQIE--TLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLD   77 (352)
Q Consensus         3 ~L~~L~Ls~N~l-~-~ip~~l~~-l~~L~~L~L~~N~l~--~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~   77 (352)
                      +|+.||+++.+. . .-|..+|. +++|+.|.+++=.|.  ++-.-..++++|..||+|+.+++.+ .+++++++|++|.
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~  201 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLS  201 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHh
Confidence            688999998764 3 56666764 799999999987775  4445567899999999999999988 6789999999998


Q ss_pred             ccCCCCCCCCCCCccccCccCcEEEccCCccccch---h----hccCcccHHHHHHh
Q psy5270          78 LTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP---A----EIGNLKNLQIILET  127 (352)
Q Consensus        78 Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip---~----~~~nl~~L~~L~l~  127 (352)
                      +.+=.+.....=..+.+|++|+.||+|..+...-+   .    .-..+++|+.||.+
T Consensus       202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS  258 (699)
T KOG3665|consen  202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS  258 (699)
T ss_pred             ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence            87765542111235788999999999998876322   2    12235566665544

>KOG0473|consensus

Probab=97.14  E-value=5.2e-06  Score=70.22  Aligned_cols=99  Identities=23%  Similarity=0.235  Sum_probs=86.8

Q ss_pred             eeCCcCcccC-ccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCCCCCCC
Q psy5270           9 LSHNKLKEIP-PGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQS   87 (352)
Q Consensus         9 Ls~N~l~~ip-~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~g~~   87 (352)
                      ++--.+++|| .++.....-+.||++.|++..+-..+..++.+..||++.|++..+|.+++....++.+++..|..+  .
T Consensus        25 ~s~s~~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~--~  102 (326)
T KOG0473|consen   25 LSLSELSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS--Q  102 (326)
T ss_pred             CCHHHhcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh--h
Confidence            3334455677 457777889999999999988888888899999999999999999999999999999999999997  4


Q ss_pred             CCCccccCccCcEEEccCCccc
Q psy5270          88 LPGNFFMLETLRALYLGDNDFE  109 (352)
Q Consensus        88 ~p~~~~~l~~L~~L~l~~N~l~  109 (352)
                      .|.+++..+.++++++-.|.|.
T Consensus       103 ~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  103 QPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             CCccccccCCcchhhhccCcch
Confidence            8999999999999999999976

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.12  E-value=0.00026  Score=37.07  Aligned_cols=21  Identities=29%  Similarity=0.512  Sum_probs=14.4

Q ss_pred             cCcEEEccCCccccchhhccC
Q psy5270          97 TLRALYLGDNDFEVLPAEIGN  117 (352)
Q Consensus        97 ~L~~L~l~~N~l~~ip~~~~n  117 (352)
                      +|++||+++|+|+.||++|++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            466777777777777776654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]

Probab=97.07  E-value=0.00055  Score=58.05  Aligned_cols=57  Identities=32%  Similarity=0.610  Sum_probs=43.7

Q ss_pred             CCceeeeccccccCCccccccc--------------------ccccCCCcccccceecCCCCCCHHHHHHHHHHHHH
Q psy5270         282 EPRWVISMGSCANGGGYYHYSY--------------------SVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQK  338 (352)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~gcpp~~~~~~~~~~~~~~  338 (352)
                      ...+.+..|.|..-+|+..+..                    ..+..+..++++|+.+|||||+|..|.+.+.++.+
T Consensus        76 kakivVA~GsCA~~Ggv~~~~~~s~~e~l~~~y~~~~~~~~~~~v~Pl~evI~VD~~IpGCPP~~e~I~~al~all~  152 (247)
T COG1941          76 KAKIVVALGSCAVTGGVQGLRNKSGEELLRPVYGDAKSTFNEESVVPLGEVIDVDYAIPGCPPSPEEIARALTALLE  152 (247)
T ss_pred             hCcEEEEEecchhcCCchhhhhccccccchhhhhcccCCCCccceEEchheeeeeeecCCCCcCHHHHHHHHHHHHc
Confidence            4567778888887666544333                    44566677889999999999999999999988754

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.06  E-value=0.00094  Score=58.18  Aligned_cols=121  Identities=24%  Similarity=0.380  Sum_probs=83.0

Q ss_pred             CCCccEEEeeCCcCc-ccCcc----ccCCCCCCEEEccCCcCccccc-c-------------cCCCCCCcEEEccCCCCC
Q psy5270           1 MLYITRITLSHNKLK-EIPPG----LANLVNLEILTLFNNQIETLPT-S-------------LSSLPKLRILNLGMNRLS   61 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~-~ip~~----l~~l~~L~~L~L~~N~l~~ip~-~-------------l~~L~~L~~L~L~~N~l~   61 (352)
                      |++|+..+||+|-|. +.|+.    +.+-+.|.+|.|++|.+..+-. -             ..+-+.|++...+.|++.
T Consensus        91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle  170 (388)
T COG5238          91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE  170 (388)
T ss_pred             CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence            578888999999887 66654    5667889999999998774421 2             234567888888888887


Q ss_pred             ccccc-----cCCCCCCCEEEccCCCCCCCCCCC--------ccccCccCcEEEccCCcccc-----chhhccCcccHHH
Q psy5270          62 SLPRG-----FGAFPVLEVLDLTYNNLNEQSLPG--------NFFMLETLRALYLGDNDFEV-----LPAEIGNLKNLQI  123 (352)
Q Consensus        62 ~ip~~-----~~~l~~L~~L~Ls~N~l~g~~~p~--------~~~~l~~L~~L~l~~N~l~~-----ip~~~~nl~~L~~  123 (352)
                      .-|..     +..-..|+++-+..|.+.    |.        .+..+++|+.||+..|-|+.     +-..++.+..|+.
T Consensus       171 ngs~~~~a~~l~sh~~lk~vki~qNgIr----pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE  246 (388)
T COG5238         171 NGSKELSAALLESHENLKEVKIQQNGIR----PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE  246 (388)
T ss_pred             cCcHHHHHHHHHhhcCceeEEeeecCcC----cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence            55543     222246888888888764    33        23567889999999999872     2234455555555


Q ss_pred             HH
Q psy5270         124 IL  125 (352)
Q Consensus       124 L~  125 (352)
                      |.
T Consensus       247 L~  248 (388)
T COG5238         247 LR  248 (388)
T ss_pred             cc
Confidence            53

>KOG1909|consensus

Probab=96.92  E-value=0.00045  Score=62.05  Aligned_cols=124  Identities=22%  Similarity=0.271  Sum_probs=63.5

Q ss_pred             CccEEEeeCCcCcccC-----ccccCCCCCCEEEccCCcCc--cc---ccccCCCCCCcEEEccCCCCCc-----ccccc
Q psy5270           3 YITRITLSHNKLKEIP-----PGLANLVNLEILTLFNNQIE--TL---PTSLSSLPKLRILNLGMNRLSS-----LPRGF   67 (352)
Q Consensus         3 ~L~~L~Ls~N~l~~ip-----~~l~~l~~L~~L~L~~N~l~--~i---p~~l~~L~~L~~L~L~~N~l~~-----ip~~~   67 (352)
                      .|++++.+.|.+..-+     ..|...+.|+.+.++.|.+.  .+   -..+..+++|++|||.+|-|+.     +-..+
T Consensus       158 ~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL  237 (382)
T KOG1909|consen  158 KLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL  237 (382)
T ss_pred             ceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh
Confidence            4555566666554222     22444455666666666553  22   2345566666666666666651     23334


Q ss_pred             CCCCCCCEEEccCCCCCCCCCCCcc-----ccCccCcEEEccCCccc-----cchhhccCcccHHHHHHh
Q psy5270          68 GAFPVLEVLDLTYNNLNEQSLPGNF-----FMLETLRALYLGDNDFE-----VLPAEIGNLKNLQIILET  127 (352)
Q Consensus        68 ~~l~~L~~L~Ls~N~l~g~~~p~~~-----~~l~~L~~L~l~~N~l~-----~ip~~~~nl~~L~~L~l~  127 (352)
                      ..++.|+.|++++|.+.. .--..|     ...++|+.|.+.+|.++     .+-.++...+.|..|.++
T Consensus       238 ~s~~~L~El~l~dcll~~-~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLn  306 (382)
T KOG1909|consen  238 SSWPHLRELNLGDCLLEN-EGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLN  306 (382)
T ss_pred             cccchheeeccccccccc-ccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCC
Confidence            555666666666666643 111111     11345666666666665     123344455555555544

>KOG2120|consensus

Probab=96.84  E-value=2.1e-05  Score=68.99  Aligned_cols=79  Identities=18%  Similarity=0.195  Sum_probs=56.3

Q ss_pred             CCcEEEccCCCCC--ccccccCCCCCCCEEEccCCCCCCCCCCCccccCccCcEEEccCCc-cc--cchhhccCcccHHH
Q psy5270          49 KLRILNLGMNRLS--SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDND-FE--VLPAEIGNLKNLQI  123 (352)
Q Consensus        49 ~L~~L~L~~N~l~--~ip~~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~-l~--~ip~~~~nl~~L~~  123 (352)
                      .||+|||+.-.++  ++---+..+++|+.|.+.++++.. +|-..+..-..|+.++++.++ |+  ..---+.+++.|+.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD-~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD-PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc-HHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            4888888887777  444445667788888888888876 666777777788888887765 66  33334667777777


Q ss_pred             HHHhc
Q psy5270         124 ILETF  128 (352)
Q Consensus       124 L~l~~  128 (352)
                      |.+++
T Consensus       265 LNlsW  269 (419)
T KOG2120|consen  265 LNLSW  269 (419)
T ss_pred             cCchH
Confidence            76654

>KOG2739|consensus

Probab=96.79  E-value=0.00093  Score=57.80  Aligned_cols=89  Identities=30%  Similarity=0.340  Sum_probs=56.3

Q ss_pred             cCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCC---ccccccCCCCCCCEEEccCCCCCCCCCCCccc
Q psy5270          17 IPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLS---SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFF   93 (352)
Q Consensus        17 ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~---~ip~~~~~l~~L~~L~Ls~N~l~g~~~p~~~~   93 (352)
                      +..-.-.+..|+.|.+.+..++++ ..+-.|++|+.|+++.|.+.   .++.-.-++++|++|++++|+++   ++.++.
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~---~lstl~  110 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK---DLSTLR  110 (260)
T ss_pred             cccccccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc---cccccc
Confidence            333333445677777777766643 33556778888888888443   45555555688888888888875   344443


Q ss_pred             ---cCccCcEEEccCCccc
Q psy5270          94 ---MLETLRALYLGDNDFE  109 (352)
Q Consensus        94 ---~l~~L~~L~l~~N~l~  109 (352)
                         .+.+|..|++.+|.-+
T Consensus       111 pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  111 PLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             hhhhhcchhhhhcccCCcc
Confidence               3445667777777655

>KOG2739|consensus

Probab=96.49  E-value=0.001  Score=57.48  Aligned_cols=112  Identities=23%  Similarity=0.264  Sum_probs=74.1

Q ss_pred             CccEEEeeCCcCcccCccccCCCCCCEEEccCCcC--c-ccccccCCCCCCcEEEccCCCCCc---cccccCCCCCCCEE
Q psy5270           3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQI--E-TLPTSLSSLPKLRILNLGMNRLSS---LPRGFGAFPVLEVL   76 (352)
Q Consensus         3 ~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l--~-~ip~~l~~L~~L~~L~L~~N~l~~---ip~~~~~l~~L~~L   76 (352)
                      .|+.|++.+-.++++- .+..|++|+.|.++.|++  . .++...-.+++|++++++.|++..   +++ +..+.+|..|
T Consensus        44 ~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~nL~~L  121 (260)
T KOG2739|consen   44 ELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELENLKSL  121 (260)
T ss_pred             chhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcchhhh
Confidence            3455555555554321 244678999999999954  4 566666677999999999999883   333 5677788999


Q ss_pred             EccCCCCCCCCCCC--ccccCccCcEEEccCCccccchhhcc
Q psy5270          77 DLTYNNLNEQSLPG--NFFMLETLRALYLGDNDFEVLPAEIG  116 (352)
Q Consensus        77 ~Ls~N~l~g~~~p~--~~~~l~~L~~L~l~~N~l~~ip~~~~  116 (352)
                      |+.+|.-+...=+.  .|.-+++|++||-..-.=.+.|.+..
T Consensus       122 dl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~~~~~  163 (260)
T KOG2739|consen  122 DLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEAPEADA  163 (260)
T ss_pred             hcccCCccccccHHHHHHHHhhhhccccccccCCcccccccc
Confidence            99999876511111  25557888888754433335555443

>KOG0473|consensus

Probab=96.46  E-value=5.1e-05  Score=64.37  Aligned_cols=83  Identities=22%  Similarity=0.168  Sum_probs=76.9

Q ss_pred             CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCC
Q psy5270           2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYN   81 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N   81 (352)
                      .+.+.||++.|++..+-..|.-++.|..||++.|++..+|..++.+..++.+++..|+.+..|.+++..+.++.+++-.|
T Consensus        42 kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~  121 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKT  121 (326)
T ss_pred             ceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccC
Confidence            45688999999998888888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC
Q psy5270          82 NLN   84 (352)
Q Consensus        82 ~l~   84 (352)
                      .|+
T Consensus       122 ~~~  124 (326)
T KOG0473|consen  122 EFF  124 (326)
T ss_pred             cch
Confidence            874

>KOG2120|consensus

Probab=96.43  E-value=6.6e-05  Score=65.97  Aligned_cols=53  Identities=19%  Similarity=0.283  Sum_probs=22.8

Q ss_pred             ccEEEeeCCcCc--ccCccccCCCCCCEEEccCCcCc-ccccccCCCCCCcEEEcc
Q psy5270           4 ITRITLSHNKLK--EIPPGLANLVNLEILTLFNNQIE-TLPTSLSSLPKLRILNLG   56 (352)
Q Consensus         4 L~~L~Ls~N~l~--~ip~~l~~l~~L~~L~L~~N~l~-~ip~~l~~L~~L~~L~L~   56 (352)
                      |++||||.-.++  ++---+..+.+|+.|.|.++++. .|-..+..-.+|+.++++
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnls  242 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLS  242 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccc
Confidence            444455444443  22222334444444444444444 333334444444444443

>KOG1201|consensus

Probab=96.38  E-value=0.0055  Score=54.30  Aligned_cols=78  Identities=45%  Similarity=0.766  Sum_probs=66.5

Q ss_pred             HHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccC
Q psy5270         124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKN  202 (352)
Q Consensus       124 L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~  202 (352)
                      ....++|.|.+.++|+|+.++|..|..+.+.+..||.+|.+..|+.+++..|+... ...+.+.+-+.|+.++++.+..
T Consensus       152 t~kaFLP~M~~~~~GHIV~IaS~aG~~g~~gl~~YcaSK~a~vGfhesL~~EL~~~-~~~~IktTlv~P~~i~Tgmf~~  229 (300)
T KOG1201|consen  152 TTKAFLPKMLENNNGHIVTIASVAGLFGPAGLADYCASKFAAVGFHESLSMELRAL-GKDGIKTTLVCPYFINTGMFDG  229 (300)
T ss_pred             HHHHHhHHHHhcCCceEEEehhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHhc-CCCCeeEEEEeeeeccccccCC
Confidence            34567999999999999999999999999999999999999999999999888642 3445788889999888766553

>KOG2123|consensus

Probab=96.31  E-value=0.00015  Score=63.18  Aligned_cols=97  Identities=26%  Similarity=0.279  Sum_probs=65.0

Q ss_pred             CccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCcccc--ccCCCCCCCEEEccC
Q psy5270           3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPR--GFGAFPVLEVLDLTY   80 (352)
Q Consensus         3 ~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~--~~~~l~~L~~L~Ls~   80 (352)
                      +.+.|++.++.|+.|.- ...|+.|++|.|+-|.++++ ..+..+++|+.|+|..|.|..+-+  .+.++++|+.|-|..
T Consensus        20 ~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E   97 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE   97 (388)
T ss_pred             HhhhhcccCCCccHHHH-HHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence            34567777777764321 13567788888888888766 236778888888888888876644  367788888888888


Q ss_pred             CCCCCCCCCCc-----cccCccCcEEE
Q psy5270          81 NNLNEQSLPGN-----FFMLETLRALY  102 (352)
Q Consensus        81 N~l~g~~~p~~-----~~~l~~L~~L~  102 (352)
                      |.-.| .-+..     +.-|++|++||
T Consensus        98 NPCc~-~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   98 NPCCG-EAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             CCccc-ccchhHHHHHHHHcccchhcc
Confidence            87776 33322     34455666554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.27  E-value=0.0026  Score=30.85  Aligned_cols=16  Identities=31%  Similarity=0.675  Sum_probs=5.8

Q ss_pred             CccEEEeeCCcCcccC
Q psy5270           3 YITRITLSHNKLKEIP   18 (352)
Q Consensus         3 ~L~~L~Ls~N~l~~ip   18 (352)
                      +|+.|++++|+|+++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4445555555544443

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.26  E-value=0.014  Score=45.52  Aligned_cols=102  Identities=25%  Similarity=0.313  Sum_probs=61.5

Q ss_pred             ccCc-cccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEccCCCCCCCCCCCcc
Q psy5270          16 EIPP-GLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNF   92 (352)
Q Consensus        16 ~ip~-~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~Ls~N~l~g~~~p~~~   92 (352)
                      .|++ .|.++++|+.+.+.. .+..|+. .|.++++|+.+++..+ +..++.. |.++++++.+.+.. .+.. .-...|
T Consensus         2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~-i~~~~F   77 (129)
T PF13306_consen    2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKS-IGDNAF   77 (129)
T ss_dssp             EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-E-E-TTTT
T ss_pred             EECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccc-cccccc
Confidence            3454 477888999999985 5777755 7888989999999885 8777764 78888899999976 4432 123466


Q ss_pred             ccCccCcEEEccCCccccchh-hccCcccHHH
Q psy5270          93 FMLETLRALYLGDNDFEVLPA-EIGNLKNLQI  123 (352)
Q Consensus        93 ~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~  123 (352)
                      ..+++|+.+++..+ +..++. .+.+. +++.
T Consensus        78 ~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~  107 (129)
T PF13306_consen   78 SNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKE  107 (129)
T ss_dssp             TT-TTECEEEETTT--BEEHTTTTTT--T--E
T ss_pred             cccccccccccCcc-ccEEchhhhcCC-CceE
Confidence            77999999999876 666655 45554 5543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.16  E-value=0.0038  Score=54.48  Aligned_cols=113  Identities=22%  Similarity=0.251  Sum_probs=81.3

Q ss_pred             CCCccEEEeeCCcCc-c----cCccccCCCCCCEEEccCCcCc----cccc-------ccCCCCCCcEEEccCCCCC-cc
Q psy5270           1 MLYITRITLSHNKLK-E----IPPGLANLVNLEILTLFNNQIE----TLPT-------SLSSLPKLRILNLGMNRLS-SL   63 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~-~----ip~~l~~l~~L~~L~L~~N~l~----~ip~-------~l~~L~~L~~L~L~~N~l~-~i   63 (352)
                      |..++.+|||+|.|. +    +-..+.+-.+|++..++.-..+    ++|+       .+-++++|+..+||+|-|. +.
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            356789999999996 3    3445777788999888775433    3443       3568899999999999998 66


Q ss_pred             ccc----cCCCCCCCEEEccCCCCC---CCCCCCc---------cccCccCcEEEccCCccccchh
Q psy5270          64 PRG----FGAFPVLEVLDLTYNNLN---EQSLPGN---------FFMLETLRALYLGDNDFEVLPA  113 (352)
Q Consensus        64 p~~----~~~l~~L~~L~Ls~N~l~---g~~~p~~---------~~~l~~L~~L~l~~N~l~~ip~  113 (352)
                      |+.    +..-+.|+.|.+++|.+.   |+.|-..         ..+-+.|+.+..+.|+|..-|.
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~  174 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSK  174 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcH
Confidence            665    455678999999999873   1112111         2345678999999999885554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.00  E-value=0.0048  Score=29.93  Aligned_cols=16  Identities=50%  Similarity=0.785  Sum_probs=6.3

Q ss_pred             CCCEEEccCCcCcccc
Q psy5270          26 NLEILTLFNNQIETLP   41 (352)
Q Consensus        26 ~L~~L~L~~N~l~~ip   41 (352)
                      +|+.|++++|+|+++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4555555555555443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.11  E-value=0.014  Score=31.64  Aligned_cols=19  Identities=37%  Similarity=0.767  Sum_probs=9.9

Q ss_pred             CCccEEEeeCCcCcccCcc
Q psy5270           2 LYITRITLSHNKLKEIPPG   20 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~~   20 (352)
                      ++|++|+|++|+|+.||++
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4455555555555555543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.11  E-value=0.014  Score=31.64  Aligned_cols=19  Identities=37%  Similarity=0.767  Sum_probs=9.9

Q ss_pred             CCccEEEeeCCcCcccCcc
Q psy5270           2 LYITRITLSHNKLKEIPPG   20 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~~   20 (352)
                      ++|++|+|++|+|+.||++
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4455555555555555543

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=94.99  E-value=0.018  Score=50.80  Aligned_cols=81  Identities=35%  Similarity=0.537  Sum_probs=69.2

Q ss_pred             CcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccc
Q psy5270         117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD  196 (352)
Q Consensus       117 nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~  196 (352)
                      |...+..|.....|.|..+..|.|+++.|..++.+.|....|+.+|..+.++.+.+..|+.    -.+.+++...|+.+.
T Consensus       115 N~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~p~p~~avY~ATKa~v~~fSeaL~~EL~----~~gV~V~~v~PG~~~  190 (265)
T COG0300         115 NILALTRLTKAVLPGMVERGAGHIINIGSAAGLIPTPYMAVYSATKAFVLSFSEALREELK----GTGVKVTAVCPGPTR  190 (265)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCceEEEEechhhcCCCcchHHHHHHHHHHHHHHHHHHHHhc----CCCeEEEEEecCccc
Confidence            4566666677778999999999999999999999999999999999999999988887773    457899999999887


Q ss_pred             cCCcc
Q psy5270         197 TGLCK  201 (352)
Q Consensus       197 ~~~l~  201 (352)
                      +....
T Consensus       191 T~f~~  195 (265)
T COG0300         191 TEFFD  195 (265)
T ss_pred             ccccc
Confidence            76653

>KOG2123|consensus

Probab=94.79  E-value=0.0032  Score=55.11  Aligned_cols=79  Identities=27%  Similarity=0.412  Sum_probs=42.5

Q ss_pred             CCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCCCCCCCCCC--ccccCccCcEEEc
Q psy5270          26 NLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPG--NFFMLETLRALYL  103 (352)
Q Consensus        26 ~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~g~~~p~--~~~~l~~L~~L~l  103 (352)
                      +.+.|++.++.+..|. -...|+.|++|.|+-|+++++-+ +..++.|+.|+|..|.|..  +-+  -+.++++|+.|+|
T Consensus        20 ~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~s--ldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIES--LDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhccccc--HHHHHHHhcCchhhhHhh
Confidence            4455566666665431 13355666666666666665533 4555666666666665542  221  2334555666666


Q ss_pred             cCCcc
Q psy5270         104 GDNDF  108 (352)
Q Consensus       104 ~~N~l  108 (352)
                      ..|.=
T Consensus        96 ~ENPC  100 (388)
T KOG2123|consen   96 DENPC  100 (388)
T ss_pred             ccCCc
Confidence            66553

>PRK10468 hydrogenase 2 small subunit; Provisional

Probab=94.71  E-value=0.032  Score=51.25  Aligned_cols=70  Identities=23%  Similarity=0.413  Sum_probs=51.2

Q ss_pred             cCCceeeeccccccCCccccccccccc--CCCcccccc--eecCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy5270         281 LEPRWVISMGSCANGGGYYHYSYSVVR--GCDRIIPVD--IYVPGCPPTAEALMYGILQLQKKVKRMKILQSWYR  351 (352)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~gcpp~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (352)
                      ......+..|.|...+|+....+|--+  |++.+++..  +.+|||||.|..++..|+.+.-..+ .-.|-++.|
T Consensus       146 ~~A~aVVAvGtCAs~GGI~aa~pnptga~gv~~~l~~~PVINIPGCPp~P~~i~~tL~~l~~~g~-lp~LD~~gR  219 (371)
T PRK10468        146 EGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGK-PPKLDDKNR  219 (371)
T ss_pred             ccCCEEEEEecccccCCcccCCCCCCCCccHHHhcCCCCeEEcCCCCCCHHHHHHHHHHHHhcCC-CccccccCC
Confidence            456788999999999999888877644  555554332  8999999999999999988773321 122555554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.59  E-value=0.028  Score=30.45  Aligned_cols=17  Identities=59%  Similarity=0.776  Sum_probs=7.4

Q ss_pred             CCcEEEccCCCCCcccc
Q psy5270          49 KLRILNLGMNRLSSLPR   65 (352)
Q Consensus        49 ~L~~L~L~~N~l~~ip~   65 (352)
                      +|+.|+|++|+++.||+
T Consensus         3 ~L~~L~L~~N~l~~lp~   19 (26)
T smart00369        3 NLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCEEECCCCcCCcCCH
Confidence            34444444444444443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.59  E-value=0.028  Score=30.45  Aligned_cols=17  Identities=59%  Similarity=0.776  Sum_probs=7.4

Q ss_pred             CCcEEEccCCCCCcccc
Q psy5270          49 KLRILNLGMNRLSSLPR   65 (352)
Q Consensus        49 ~L~~L~L~~N~l~~ip~   65 (352)
                      +|+.|+|++|+++.||+
T Consensus         3 ~L~~L~L~~N~l~~lp~   19 (26)
T smart00370        3 NLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCEEECCCCcCCcCCH
Confidence            34444444444444443

>TIGR00391 hydA hydrogenase (NiFe) small subunit (hydA)

Probab=93.99  E-value=0.086  Score=48.49  Aligned_cols=57  Identities=25%  Similarity=0.495  Sum_probs=44.8

Q ss_pred             cCCceeeeccccccCCccccccccccc--CCCcccc--cceecCCCCCCHHHHHHHHHHHH
Q psy5270         281 LEPRWVISMGSCANGGGYYHYSYSVVR--GCDRIIP--VDIYVPGCPPTAEALMYGILQLQ  337 (352)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~gcpp~~~~~~~~~~~~~  337 (352)
                      ......+..|.|...+|+....++--.  +++.+++  ..+.+|||||.|..++..|..+.
T Consensus       148 ~~A~aVIAvGtCAs~GGI~aa~pnptga~~v~~vi~~~pvinIPGCPp~Pe~i~~tl~~~l  208 (365)
T TIGR00391       148 EGAAAIIAIGTCSSWGGVQAAGPNPTGAVPLQKVIPDKPVINVPGCPPNPHNFLATVAYII  208 (365)
T ss_pred             hcCCEEEEEeccccccCccCCCCCCCCCcchhHhcCCCCeEEeCCCCCCHHHHHHHHHHHH
Confidence            456788999999999998887777533  5565552  23999999999999998888754

Called (hupA/hydA/hupS/hoxK/vhtG) Involved in hydrogenase reactions performing different specific functions in different species eg (EC 1.12.2.1) in Desulfovibrio gigas,(EC 1.12.99.3) in Wolinella succinogenes and (EC 1.18.99.1) in E.coli and a number of other species and (EC 1.12.99.-) in the archea.

>KOG1205|consensus

Probab=93.59  E-value=0.15  Score=45.48  Aligned_cols=80  Identities=35%  Similarity=0.444  Sum_probs=62.1

Q ss_pred             cccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccccc
Q psy5270         118 LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT  197 (352)
Q Consensus       118 l~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~  197 (352)
                      .-...++....+|.|..+++|+|+.++|..|..++|....|+.+|.++.++.+.+..|+...  .....+ .+.|+++++
T Consensus       123 ~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~~~P~~~~Y~ASK~Al~~f~etLR~El~~~--~~~i~i-~V~PG~V~T  199 (282)
T KOG1205|consen  123 VFGTVYLTKAALPSMKKRNDGHIVVISSIAGKMPLPFRSIYSASKHALEGFFETLRQELIPL--GTIIII-LVSPGPIET  199 (282)
T ss_pred             chhhHHHHHHHHHHhhhcCCCeEEEEeccccccCCCcccccchHHHHHHHHHHHHHHHhhcc--CceEEE-EEecCceee
Confidence            33444555566889988889999999999999999998899999999999999888777542  111333 678988877


Q ss_pred             CCc
Q psy5270         198 GLC  200 (352)
Q Consensus       198 ~~l  200 (352)
                      ...
T Consensus       200 e~~  202 (282)
T KOG1205|consen  200 EFT  202 (282)
T ss_pred             ccc
Confidence            643

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=92.88  E-value=0.16  Score=43.90  Aligned_cols=78  Identities=37%  Similarity=0.503  Sum_probs=62.7

Q ss_pred             CcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccc
Q psy5270         117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD  196 (352)
Q Consensus       117 nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~  196 (352)
                      |++.+-+.....+|.|..+..|.|++++|..+....|.--.|+.+|..+..+...+..++.    -.+++.+.+.|+.+.
T Consensus       112 Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~~~y~~~~vY~ATK~aV~~fs~~LR~e~~----g~~IRVt~I~PG~v~  187 (246)
T COG4221         112 NVKGLLNGTRAVLPGMVERKSGHIINLGSIAGRYPYPGGAVYGATKAAVRAFSLGLRQELA----GTGIRVTVISPGLVE  187 (246)
T ss_pred             HHHHHHHHHHHhhhHHHhcCCceEEEeccccccccCCCCccchhhHHHHHHHHHHHHHHhc----CCCeeEEEecCceec
Confidence            3444444555668999999999999999999999999999999999999888777655543    457899999998774


Q ss_pred             cC
Q psy5270         197 TG  198 (352)
Q Consensus       197 ~~  198 (352)
                      ..
T Consensus       188 ~~  189 (246)
T COG4221         188 TT  189 (246)
T ss_pred             ce
Confidence            43

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=90.90  E-value=0.13  Score=27.75  Aligned_cols=17  Identities=24%  Similarity=0.577  Sum_probs=9.4

Q ss_pred             CccEEEeeCCcCcccCc
Q psy5270           3 YITRITLSHNKLKEIPP   19 (352)
Q Consensus         3 ~L~~L~Ls~N~l~~ip~   19 (352)
                      +|++|++++|+|+++|+
T Consensus         3 ~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLTSLPE   19 (26)
T ss_pred             ccceeecCCCccccCcc
Confidence            45555555555555554

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=88.34  E-value=0.32  Score=26.31  Aligned_cols=16  Identities=50%  Similarity=0.767  Sum_probs=8.2

Q ss_pred             CcEEEccCCCCCcccc
Q psy5270          50 LRILNLGMNRLSSLPR   65 (352)
Q Consensus        50 L~~L~L~~N~l~~ip~   65 (352)
                      |+.|++++|+++++|+
T Consensus         4 L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        4 LKELNVSNNQLTSLPE   19 (26)
T ss_pred             cceeecCCCccccCcc
Confidence            4555555555555544

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=87.30  E-value=0.5  Score=25.63  Aligned_cols=13  Identities=31%  Similarity=0.552  Sum_probs=5.6

Q ss_pred             CCcEEEccCCCCC
Q psy5270          49 KLRILNLGMNRLS   61 (352)
Q Consensus        49 ~L~~L~L~~N~l~   61 (352)
                      +|+.|+++.|+++
T Consensus         3 ~L~~L~L~~NkI~   15 (26)
T smart00365        3 NLEELDLSQNKIK   15 (26)
T ss_pred             ccCEEECCCCccc
Confidence            3444444444443

>KOG1014|consensus

Probab=86.94  E-value=0.98  Score=40.57  Aligned_cols=77  Identities=32%  Similarity=0.534  Sum_probs=61.4

Q ss_pred             cHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270         120 NLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL  199 (352)
Q Consensus       120 ~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~  199 (352)
                      ....+....+|.|..+..|.|++++|..+..+.|.+..|+.+|..+..+.+.+..|+..    .++.+..+.|..+.+..
T Consensus       162 ~~~~~t~~ilp~M~~r~~G~IvnigS~ag~~p~p~~s~ysasK~~v~~~S~~L~~Ey~~----~gI~Vq~v~p~~VaTkm  237 (312)
T KOG1014|consen  162 SVTLLTQLILPGMVERKKGIIVNIGSFAGLIPTPLLSVYSASKAFVDFFSRCLQKEYES----KGIFVQSVIPYLVATKM  237 (312)
T ss_pred             hHHHHHHHhhhhhhcCCCceEEEeccccccccChhHHHHHHHHHHHHHHHHHHHHHHHh----cCeEEEEeehhheeccc
Confidence            33344455689999999999999999999999999999999999888887777777654    37788888887776554


Q ss_pred             c
Q psy5270         200 C  200 (352)
Q Consensus       200 l  200 (352)
                      .
T Consensus       238 ~  238 (312)
T KOG1014|consen  238 A  238 (312)
T ss_pred             c
Confidence            3

>PRK08339 short chain dehydrogenase; Provisional

Probab=86.40  E-value=0.98  Score=39.99  Aligned_cols=70  Identities=27%  Similarity=0.396  Sum_probs=56.1

Q ss_pred             HHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270         125 LETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG  198 (352)
Q Consensus       125 ~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~  198 (352)
                      .....|.|..+..|.|+.++|..+..+.+....|+.+|.++.++.+.+..++..    .+++++.+.|+.+.++
T Consensus       124 ~~~~l~~m~~~~~g~Ii~isS~~~~~~~~~~~~y~asKaal~~l~~~la~el~~----~gIrVn~v~PG~v~T~  193 (263)
T PRK08339        124 TRALVPAMERKGFGRIIYSTSVAIKEPIPNIALSNVVRISMAGLVRTLAKELGP----KGITVNGIMPGIIRTD  193 (263)
T ss_pred             HHHHHHHHHHcCCCEEEEEcCccccCCCCcchhhHHHHHHHHHHHHHHHHHhcc----cCeEEEEEEeCcCccH
Confidence            334467776666789999999888877888888999999999999888877754    3789999999887664

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=85.84  E-value=0.28  Score=25.83  Aligned_cols=14  Identities=29%  Similarity=0.439  Sum_probs=7.1

Q ss_pred             ccCcEEEccCCccc
Q psy5270          96 ETLRALYLGDNDFE  109 (352)
Q Consensus        96 ~~L~~L~l~~N~l~  109 (352)
                      ++|++|++++|+++
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            45566666666655

...

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=83.35  E-value=1.9  Score=38.34  Aligned_cols=66  Identities=18%  Similarity=0.113  Sum_probs=52.8

Q ss_pred             hcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270         127 TFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG  198 (352)
Q Consensus       127 ~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~  198 (352)
                      ...|.|..  .|.|+.+++..+..+.|....|+.+|.++.++.+.++.++..    .+++++.+.|+.+.+.
T Consensus       130 ~~~~~m~~--~G~Iv~isS~~~~~~~~~~~~Y~asKaAl~~l~r~la~el~~----~gIrVn~v~PG~i~T~  195 (271)
T PRK06505        130 RAAKLMPD--GGSMLTLTYGGSTRVMPNYNVMGVAKAALEASVRYLAADYGP----QGIRVNAISAGPVRTL  195 (271)
T ss_pred             HHHHhhcc--CceEEEEcCCCccccCCccchhhhhHHHHHHHHHHHHHHHhh----cCeEEEEEecCCcccc
Confidence            34566642  488999988888777888888999999999999999888754    3789999999987664

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=82.77  E-value=2.5  Score=37.32  Aligned_cols=69  Identities=19%  Similarity=0.170  Sum_probs=53.5

Q ss_pred             HHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270         125 LETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG  198 (352)
Q Consensus       125 ~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~  198 (352)
                      .....|.|.. ..+.|+.+++..+..+.|....|+.+|.++.++.+.++.++..+    +++++.+.|+.+.+.
T Consensus       128 ~~~~~p~m~~-~~g~Iv~iss~~~~~~~~~~~~Y~asKaal~~l~~~la~e~~~~----gIrVn~i~PG~v~T~  196 (261)
T PRK08690        128 AKAARPMMRG-RNSAIVALSYLGAVRAIPNYNVMGMAKASLEAGIRFTAACLGKE----GIRCNGISAGPIKTL  196 (261)
T ss_pred             HHHHHHHhhh-cCcEEEEEcccccccCCCCcccchhHHHHHHHHHHHHHHHhhhc----CeEEEEEecCcccch
Confidence            3334455543 35789888888887778888899999999999998888777553    789999999988765

>KOG4169|consensus

Probab=82.32  E-value=0.81  Score=39.28  Aligned_cols=76  Identities=34%  Similarity=0.467  Sum_probs=59.5

Q ss_pred             HHhcchhhHhhc---CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCcc
Q psy5270         125 LETFLPDMMEKN---RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCK  201 (352)
Q Consensus       125 ~l~~~p~~~~~~---~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~  201 (352)
                      ....+|.|-+.+   .|-|++++|..++.+.|..-.|+.++..+.++.++++...  ....++.++..+.|+++.+...+
T Consensus       114 T~~alpyMdk~~gG~GGiIvNmsSv~GL~P~p~~pVY~AsKaGVvgFTRSla~~a--yy~~sGV~~~avCPG~t~t~l~~  191 (261)
T KOG4169|consen  114 TQLALPYMDKKQGGKGGIIVNMSSVAGLDPMPVFPVYAASKAGVVGFTRSLADLA--YYQRSGVRFNAVCPGFTRTDLAE  191 (261)
T ss_pred             hhhhhhhhhhhcCCCCcEEEEeccccccCccccchhhhhcccceeeeehhhhhhh--hHhhcCEEEEEECCCcchHHHHH
Confidence            334466666554   4678999999999999999999999999999999877654  44567899999999987665443


Q ss_pred             C
Q psy5270         202 N  202 (352)
Q Consensus       202 ~  202 (352)
                      .
T Consensus       192 ~  192 (261)
T KOG4169|consen  192 N  192 (261)
T ss_pred             H
Confidence            3

>KOG4308|consensus

Probab=81.55  E-value=0.026  Score=54.50  Aligned_cols=125  Identities=26%  Similarity=0.261  Sum_probs=73.6

Q ss_pred             ccEEEeeCCcCc-----ccCccccCCCCCCEEEccCCcCc-----ccccccC----CCCCCcEEEccCCCCCc-----cc
Q psy5270           4 ITRITLSHNKLK-----EIPPGLANLVNLEILTLFNNQIE-----TLPTSLS----SLPKLRILNLGMNRLSS-----LP   64 (352)
Q Consensus         4 L~~L~Ls~N~l~-----~ip~~l~~l~~L~~L~L~~N~l~-----~ip~~l~----~L~~L~~L~L~~N~l~~-----ip   64 (352)
                      +++|++..+.++     .+.+.+.....++++|++.|.+.     .++..+.    ...+++.|.+.+|.++.     +-
T Consensus       146 l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~  225 (478)
T KOG4308|consen  146 LQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLD  225 (478)
T ss_pred             HHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHH
Confidence            334455555544     24444555667777777777663     1233333    46667777777777661     11


Q ss_pred             cccCCCCC-CCEEEccCCCCCCC---CCCCccccC-ccCcEEEccCCccc-----cchhhccCcccHHHHHHhc
Q psy5270          65 RGFGAFPV-LEVLDLTYNNLNEQ---SLPGNFFML-ETLRALYLGDNDFE-----VLPAEIGNLKNLQIILETF  128 (352)
Q Consensus        65 ~~~~~l~~-L~~L~Ls~N~l~g~---~~p~~~~~l-~~L~~L~l~~N~l~-----~ip~~~~nl~~L~~L~l~~  128 (352)
                      ..+...++ +..|++..|++...   .+.+.+..+ ..++.++++.|+|+     .+...+..+..++.+.+..
T Consensus       226 ~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~  299 (478)
T KOG4308|consen  226 EVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSN  299 (478)
T ss_pred             HHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhccc
Confidence            22444444 66688888877531   122334444 56788888888886     2456667777777777665

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=81.54  E-value=2.2  Score=38.05  Aligned_cols=73  Identities=19%  Similarity=0.243  Sum_probs=54.9

Q ss_pred             cHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270         120 NLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG  198 (352)
Q Consensus       120 ~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~  198 (352)
                      ....+.....|.|..  .|.|+.+++..+..+.|....|+.+|.++.++.+.++.++..    .+++++.+.|+++.+.
T Consensus       121 g~~~l~~~~~p~m~~--~g~Iv~isS~~~~~~~~~~~~Y~asKaal~~l~~~la~el~~----~gIrVn~v~PG~v~T~  193 (274)
T PRK08415        121 SLIELTRALLPLLND--GASVLTLSYLGGVKYVPHYNVMGVAKAALESSVRYLAVDLGK----KGIRVNAISAGPIKTL  193 (274)
T ss_pred             HHHHHHHHHHHHhcc--CCcEEEEecCCCccCCCcchhhhhHHHHHHHHHHHHHHHhhh----cCeEEEEEecCccccH
Confidence            333334444566643  478999888887777787788999999999999998887754    3788999999987653

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=80.19  E-value=4  Score=35.74  Aligned_cols=77  Identities=31%  Similarity=0.393  Sum_probs=57.0

Q ss_pred             ccHHHHHHhcchhhHhhc-CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccccc
Q psy5270         119 KNLQIILETFLPDMMEKN-RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT  197 (352)
Q Consensus       119 ~~L~~L~l~~~p~~~~~~-~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~  197 (352)
                      .....+.....|.+..+. .|.|+.++|..+..+.+....|+.+|.++.++.+.+..++...    +.+++.+.|+.+.+
T Consensus       116 ~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~Y~asK~a~~~l~~~la~e~~~~----girvn~v~PG~v~t  191 (251)
T PRK12481        116 KTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQGGIRVPSYTASKSAVMGLTRALATELSQY----NINVNAIAPGYMAT  191 (251)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCCCCCCcchHHHHHHHHHHHHHHHHHHhhc----CeEEEEEecCCCcc
Confidence            333334444455565443 4789999888887777777889999999999999988877543    78999999998766


Q ss_pred             CC
Q psy5270         198 GL  199 (352)
Q Consensus       198 ~~  199 (352)
                      ..
T Consensus       192 ~~  193 (251)
T PRK12481        192 DN  193 (251)
T ss_pred             Cc
Confidence            53

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=80.01  E-value=2.8  Score=36.99  Aligned_cols=65  Identities=22%  Similarity=0.199  Sum_probs=51.8

Q ss_pred             cchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270         128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG  198 (352)
Q Consensus       128 ~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~  198 (352)
                      ..|.|.  ..|.|+.++|..+..+.|....|..+|.++.++.+.++.++..    .+++++.+.|+.+.+.
T Consensus       132 ~~~~m~--~~G~Iv~isS~~~~~~~~~~~~Y~asKaal~~l~~~la~el~~----~gIrVn~v~PG~v~T~  196 (260)
T PRK06603        132 AEALMH--DGGSIVTLTYYGAEKVIPNYNVMGVAKAALEASVKYLANDMGE----NNIRVNAISAGPIKTL  196 (260)
T ss_pred             HHhhhc--cCceEEEEecCccccCCCcccchhhHHHHHHHHHHHHHHHhhh----cCeEEEEEecCcCcch
Confidence            345553  2488999988877777788889999999999999999888754    3789999999987654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	352
2fug_6	181	Crystal Structure Of The Hydrophilic Domain Of Resp		1e-12
1yb1_A	272	Crystal Structure Of Human 17-Beta-Hydroxysteroid D		2e-08
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		8e-07
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		7e-05
1a27_A	289	Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 C		2e-04
1fdw_A	327	Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 M		2e-04
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		2e-04
1iol_A	327	Estrogenic 17-beta Hydroxysteroid Dehydrogenase Com		2e-04
1fds_A	327	Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 C		2e-04
1fdu_A	327	Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 M		2e-04
1equ_A	327	Type 1 17-Beta Hydroxysteroid Dehydrogenase Equilin		2e-04
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		5e-04
1hdc_A	254	Mechanism Of Inhibition Of 3alpha,20beta-Hydroxyste		7e-04
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		7e-04
4arn_A	279	Crystal Structure Of The N-terminal Domain Of Droso		7e-04
2hsd_A	253	The Refined Three-Dimensional Structure Of 3alpha,2		8e-04

>pdb|2FUG|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus Length = 181

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 280 MLEPRWVISMGSCANXXXXXXXXXXXXXXCDRIIPVDIYVPGCPPTAEALMYGILQLQKK 339
           M +P+WVISMG+CA+               D ++PVD+YVPGCPP  EAL+Y ++QLQKK
Sbjct: 99  MPDPKWVISMGACASSGGMFNNYAIVQNV-DSVVPVDVYVPGCPPRPEALIYAVMQLQKK 157
Query: 340 VK 341
           V+
Sbjct: 158 VR 159

>pdb|1YB1|A Chain A, Crystal Structure Of Human 17-Beta-Hydroxysteroid Dehydrogenase Type Xi Length = 272

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 126 ETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVXXXXXXXXXXXXXXXXNSKI 185
           + FLP M + N GHIV ++S AG V +P L+ YC+SKFA                  + +
Sbjct: 148 KAFLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDELAALQI-TGV 206
Query: 186 KFTSIFPFMVDTGLCKNPKIKM 207
           K T + P  V+TG  KNP   +
Sbjct: 207 KTTCLCPNFVNTGFIKNPSTSL 228

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/126 (37%), Positives = 66/126 (52%), Gaps = 7/126 (5%)
Query: 4   ITRITLSHNKLKEIPPGLAN-LVNLEILTLFNNQIEXX-XXXXXXXXKLRILNLGMNRLS 61
           +T + L+ N+L+ +P G+ + L NL+ L L  NQ++            L  LNL  N+L 
Sbjct: 87  LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ 146
Query: 62  SLPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI-GNL 118
           SLP+G F     L  LDL+YN L  QSLP G F  L  L+ L L  N  + +P  +   L
Sbjct: 147 SLPKGVFDKLTNLTELDLSYNQL--QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 204
Query: 119 KNLQII 124
            +LQ I
Sbjct: 205 TSLQYI 210

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 5   TRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIEXXXXXX-XXXXKLRILNLGMNRLSS 62
           TR+ L  NKL+ +P G+   L  L  L+L  NQI+           KL IL L  N+L S
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 63  LPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEV 110
           LP G F     L+ L L  N L  +S+P G F  L +L+ ++L  N ++ 
Sbjct: 91  LPNGVFDKLTQLKELALDTNQL--KSVPDGIFDRLTSLQKIWLHTNPWDC 138

>pdb|1A27|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 C-Terminal Deletion Mutant Complexed With Estradiol And Nadp+ Length = 289

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
           +L+ FLPDM  +  G ++   S+ G++GLP    YCASKFA+
Sbjct: 121 MLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFAL 162

>pdb|1FDW|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant H221q Complexed With Estradiol Length = 327

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
           +L+ FLPDM  +  G ++   S+ G++GLP    YCASKFA+
Sbjct: 121 MLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFAL 162

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Query: 9   LSHNKLKEIPPGL-ANLVNLEILTLFNNQIEXXX-XXXXXXXKLRILNLGMNRLSSLPRG 66
           ++ NKL+ +P G+   LVNL  L L  NQ++           KL  L+LG N L SLP+G
Sbjct: 92  VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG 151
Query: 67  -FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP 112
            F     L+ L L YNN  ++   G F  L  L+ L L +N  + +P
Sbjct: 152 VFDKLTSLKELRL-YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197

>pdb|1IOL|A Chain A, Estrogenic 17-beta Hydroxysteroid Dehydrogenase Complexed 17-beta- Estradiol Length = 327

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
           +L+ FLPDM  +  G ++   S+ G++GLP    YCASKFA+
Sbjct: 121 MLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFAL 162

>pdb|1FDS|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Complexed With 17- Beta-Estradiol Length = 327

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
           +L+ FLPDM  +  G ++   S+ G++GLP    YCASKFA+
Sbjct: 121 MLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFAL 162

>pdb|1FDU|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant H221l Complexed With Estradiol And Nadp+ Length = 327

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
           +L+ FLPDM  +  G ++   S+ G++GLP    YCASKFA+
Sbjct: 121 MLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFAL 162

>pdb|1EQU|A Chain A, Type 1 17-Beta Hydroxysteroid Dehydrogenase Equilin Complexed With Nadp+ Length = 327

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
           +L+ FLPDM  +  G ++   S+ G++GLP    YCASKFA+
Sbjct: 121 MLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFAL 162

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 50  LRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE 109
           L  L L  N L+ LP        L VLDL++N L   SLP        L+  Y  DN   
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKYFYFFDNMVT 306
Query: 110 VLPAEIGNLKNLQII 124
            LP E GNL NLQ +
Sbjct: 307 TLPWEFGNLCNLQFL 321

>pdb|1HDC|A Chain A, Mechanism Of Inhibition Of 3alpha,20beta-Hydroxysteroid Dehydrogenase By A Licorice-Derived Steroidal Inhibitor Length = 254

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 14/108 (12%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVXXXXXXXXXXX 176
           NL  + I ++T +P M +   G IV ISS AG++GL     Y ASK+ V           
Sbjct: 110 NLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGV----RGLSKLA 165
Query: 177 XXXXXNSKIKFTSIFPFM------VDTGLCKN----PKIKMNRLSSLP 214
                  +I+  S+ P M       +TG+ +     P   M R+ + P
Sbjct: 166 AVELGTDRIRVNSVHPGMTYTPMTAETGIRQGEGNYPNTPMGRVGNEP 213

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 6/111 (5%)
Query: 4   ITRITLSHNKLKEIPPGLAN-LVNLEILTLFNNQIEXXXXXX-XXXXKLRILNLGMNRLS 61
           +T++ L  NKL+ +P G+ N L +L  L L  NQ++           +L+ L L  N+L 
Sbjct: 54  LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ 113
Query: 62  SLPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEV 110
           SLP G F     L+ L L  N L  +S+P G F  L +L+ ++L DN ++ 
Sbjct: 114 SLPDGVFDKLTQLKDLRLYQNQL--KSVPDGVFDRLTSLQYIWLHDNPWDC 162

>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila Toll Receptor Length = 279

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 4   ITRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIEXXXXXXXXXXKLRILNLGMNRLSS 62
           + R   +  +L  IP  L  ++ NL  L L  N  E           L  +  G N+L  
Sbjct: 125 LKRFRFTTRRLTHIPANLLTDMRNLSHLELRANIEEMPSHLFDDLENLESIEFGSNKLRQ 184
Query: 63  LPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEV 110
           +PRG FG  P L+ L+L  N L  +S+P G F  L +L+ ++L  N ++ 
Sbjct: 185 MPRGIFGKMPKLKQLNLASNQL--KSVPDGIFDRLTSLQKIWLHTNPWDC 232

>pdb|2HSD|A Chain A, The Refined Three-Dimensional Structure Of 3alpha,20beta- Hydroxysteroid Dehydrogenase And Possible Roles Of The Residues Conserved In Short-Chain Dehydrogenases Length = 253

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVXXXXXXXXXXX 176
           NL  + I ++T +P M +   G IV ISS AG++GL     Y ASK+ V           
Sbjct: 110 NLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGV----RGLSKLA 165
Query: 177 XXXXXNSKIKFTSIFPFMVDTGLCKNPKIKMN 208
                  +I+  S+ P M  T +     I+  
Sbjct: 166 AVELGTDRIRVNSVHPGMTYTPMTAETGIRQG 197

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	352
3i9v_6	181	NADH-quinone oxidoreductase subunit 6; electron tr	1e-43
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-37
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-31
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-30
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-07
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	1e-36
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-32
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-27
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-26
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-27
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-23
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-25
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-24
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-24
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-21
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-24
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-23
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-04
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	6e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	1e-22
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	2e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-22
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-21
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-21
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-20
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-22
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-21
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-19
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-16
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-15
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-21
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-21
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-21
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-21
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-17
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-21
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-20
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-17
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	3e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-20
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-19
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-19
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-04
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	1e-20
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	2e-20
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	2e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-20
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-19
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-15
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-20
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-05
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	3e-19
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	5e-19
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	1e-18
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	2e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-14
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	3e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	1e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	2e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-17
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-16
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-13
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-04
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	6e-17
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	9e-17
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	1e-16
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	1e-16
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-16
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-11
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	3e-16
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	3e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-16
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-15
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-15
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-15
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-13
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-15
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-12
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-15
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-14
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-13
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-12
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-05
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	3e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-04
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	4e-15
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-15
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-10
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-15
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-06
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	7e-15
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	1e-14
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	2e-14
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	2e-14
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	2e-14
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	3e-14
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	3e-14
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	4e-14
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	4e-14
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	5e-14
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	8e-14
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	1e-13
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	2e-13
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	2e-13
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-13
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	3e-13
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-13
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	4e-13
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	4e-13
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	4e-13
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	4e-13
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	5e-13
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	5e-13
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-13
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-12
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-07
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	6e-13
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	6e-13
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	6e-13
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	7e-13
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	7e-13
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	8e-13
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	9e-13
4dqx_A	277	Probable oxidoreductase protein; structural genomi	1e-12
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	1e-12
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	1e-12
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	1e-12
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	1e-12
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	2e-12
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	2e-12
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	2e-12
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	3e-12
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	3e-12
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	3e-12
4e4y_A	244	Short chain dehydrogenase family protein; structur	3e-12
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	4e-12
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	5e-12
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	5e-12
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	6e-12
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	6e-12
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	7e-12
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	1e-11
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	1e-11
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-11
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-11
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	1e-11
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	1e-11
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	2e-11
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	3e-11
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	4e-11
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	4e-11
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	5e-11
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	6e-11
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	7e-11
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	8e-11
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	1e-10
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	1e-10
1xq1_A	266	Putative tropinone reducatse; structural genomics,	1e-10
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	1e-10
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	2e-10
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	2e-10
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	2e-10
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	2e-10
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	2e-10
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	3e-10
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	3e-10
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	3e-10
3cxt_A	291	Dehydrogenase with different specificities; rossma	6e-10
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	6e-10
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	7e-10
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	8e-10
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	1e-09
3imf_A	257	Short chain dehydrogenase; structural genomics, in	1e-09
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	1e-09
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	2e-09
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	2e-09
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	2e-09
1spx_A	278	Short-chain reductase family member (5L265); paral	2e-09
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	2e-09
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	2e-09
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	2e-09
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	2e-09
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	2e-09
1cc1_S	283	Hydrogenase (small subunit); NI-Fe-Se hydrogenase,	2e-09
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	3e-09
1xkq_A	280	Short-chain reductase family member (5D234); parra	3e-09
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	3e-09
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	3e-09
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	5e-09
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	5e-09
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	8e-09
1xhl_A	297	Short-chain dehydrogenase/reductase family member	9e-09
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	9e-09
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	1e-08
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	1e-08
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	2e-08
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	2e-08
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	2e-08
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	3e-08
2wpn_A	317	Periplasmic [nifese] hydrogenase, small subunit; m	4e-08
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	5e-08
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	5e-08
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	5e-08
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	9e-08
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	1e-07
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	1e-07
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	2e-07
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	2e-07
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	2e-07
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	2e-07
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	3e-07
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	3e-07
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	4e-07
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	4e-07
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	4e-07
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	4e-07
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	5e-07
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	5e-07
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	6e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	9e-07
1wui_S	267	Periplasmic [NIFE] hydrogenase small subunit; high	1e-06
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	1e-06
1yq9_A	264	Periplasmic [NIFE] hydrogenase small subunit; oxid	1e-06
1h2a_S	317	Hydrogenase; SO ligand, hydrogen metabolism, Mg ce	1e-06
3rih_A	293	Short chain dehydrogenase or reductase; structural	2e-06
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	2e-06
3ayx_B	283	Membrane-bound hydrogenase small subunit; oxidored	3e-06
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	4e-06
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	5e-06
1yqw_A	264	Periplasmic [NIFE] hydrogenase small subunit; NI-F	6e-06
3uqy_S	335	Hydrogenase-1 small chain; membrane-bound hydrogen	6e-06
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	6e-06
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	7e-06
3rgw_S	339	Membrane-bound hydrogenase (NIFE) small subunit H;	8e-06
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	9e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-04
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	1e-05
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	2e-05
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	2e-05
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	2e-05
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	3e-05
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	3e-05
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	3e-05
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	3e-05
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	4e-05
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	4e-05
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	5e-05
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	5e-05
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	5e-05
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	7e-05
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	7e-05
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	8e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-04
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	8e-05
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	9e-05
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	1e-04
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	1e-04
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	1e-04
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	1e-04
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	1e-04
3myr_A	269	Hydrogenase (NIFE) small subunit HYDA; [NIFE] hydr	2e-04
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	2e-04
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	2e-04
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	2e-04
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	2e-04
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	3e-04
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	3e-04
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	3e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-04
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	3e-04
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	4e-04

>3i9v_6 NADH-quinone oxidoreductase subunit 6; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_6* 2fug_6* 3iam_6* 3ias_6* 3m9s_6* Length = 181

 Score =  147 bits (374), Expect = 1e-43
 Identities = 36/72 (50%), Positives = 54/72 (75%), Gaps = 1/72 (1%)

Query: 280 MLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKK 339
           M +P+WVISMG+CA+ GG ++ +Y++V+  D ++PVD+YVPGCPP  EAL+Y ++QLQKK
Sbjct: 99  MPDPKWVISMGACASSGGMFN-NYAIVQNVDSVVPVDVYVPGCPPRPEALIYAVMQLQKK 157

Query: 340 VKRMKILQSWYR 351
           V+     +   R
Sbjct: 158 VRGQAYNERGER 169

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 Length = 272

 Score =  132 bits (334), Expect = 1e-36
 Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
           FLP M + N GHIV ++S AG V +P L+ YC+SKFA  G  + L +EL    + + +K 
Sbjct: 150 FLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDELA-ALQITGVKT 208

Query: 188 TSIFPFMVDTGLCKNPKIKMNRL 210
           T + P  V+TG  KNP   +   
Sbjct: 209 TCLCPNFVNTGFIKNPSTSLGPT 231

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  125 bits (317), Expect = 4e-32
 Identities = 51/297 (17%), Positives = 87/297 (29%), Gaps = 60/297 (20%)

Query: 5   TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSSL 63
             +   +N+L+   P   + + L  L L  NQI  +P +      ++  L+   N+L  +
Sbjct: 333 GMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYI 392

Query: 64  PRGFGA--FPVLEVLDLTYNNLNE------QSLPGNFFMLETLRALYLGDNDFEVLPAEI 115
           P  F A    V+  +D +YN +          L    F    + ++ L +N     P E+
Sbjct: 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL 452

Query: 116 -GNLKNLQII------LETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGL 168
                 L  I      L     + ++                    L             
Sbjct: 453 FSTGSPLSSINLMGNMLTEIPKNSLK---------DENENFKNTYLL------------- 490

Query: 169 MEALAEELRED-ARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPV 222
                  +  D   N   K T +     D      P +       N  S  P        
Sbjct: 491 -----TSI--DLRFN---KLTKLSD---DFRATTLPYLVGIDLSYNSFSKFPTQPLNSST 537

Query: 223 LEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
           L+ F      D   N       P    +  +L  L +G ND   +  +I    N+ +
Sbjct: 538 LKGFGIRNQRDAQGNRTLR-EWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISV 591

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  110 bits (276), Expect = 9e-27
 Identities = 46/303 (15%), Positives = 90/303 (29%), Gaps = 49/303 (16%)

Query: 9   LSHNKLKEIPPGLANLVNLEILTLFNNQIETLP---------TSLSSLPKLRILNLGMNR 59
            +   L ++P  L  L  ++++ +  N+  +                  K++I+ +G N 
Sbjct: 257 YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316

Query: 60  LSSL--PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-G 116
           L +            L +L+  YN L        F     L +L L  N    +PA   G
Sbjct: 317 LKTFPVETSLQKMKKLGMLECLYNQLE--GKLPAFGSEIKLASLNLAYNQITEIPANFCG 374

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
             + ++ +           N   +  I ++     +  +     S   +  +     + L
Sbjct: 375 FTEQVENLS-------FAHN--KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425

Query: 177 REDARNSKI---------KFTSIFPFMVDTGLCKNPK------IKMNRLSSLPRGFGAFP 221
                             + +          L           +  N L+ +P+      
Sbjct: 426 DPTPFKGINVSSINLSNNQISKFPK-----ELFSTGSPLSSINLMGNMLTEIPKNSLKDE 480

Query: 222 VLEAFSFT--TILDLTYNNLNEQSLPGNFFM--LETLRALYLGDNDFEVLPAEIGNLKNL 277
                +    T +DL +N L    L  +F    L  L  + L  N F   P +  N   L
Sbjct: 481 NENFKNTYLLTSIDLRFNKL--TKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTL 538

Query: 278 QIM 280
           +  
Sbjct: 539 KGF 541

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  106 bits (266), Expect = 2e-25
 Identities = 46/310 (14%), Positives = 92/310 (29%), Gaps = 70/310 (22%)

Query: 12  NKLKEIPPGLANLVNLEILTLF-NNQIETLPTSLSSLPKLRILNLGMNRLSSLPR----- 65
            + K       NL +L  + ++    +  LPT L +LP+++++N+  NR  S  +     
Sbjct: 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDW 295

Query: 66  ----GFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL 121
                      ++++ + YNNL    +  +   ++ L  L    N  E      G+   L
Sbjct: 296 QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKL 355

Query: 122 QII------LETFLPDMMEKNRG---------HIVGISSMAGIVGLPNLVPYCASKFAVR 166
             +      +     +                 +  I ++     +  +           
Sbjct: 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVM----------- 404

Query: 167 GLMEALAEELREDARNSKIKFTSIFPFMVDT---GLCKNPKIKM-----NRLSSLPRG-F 217
                    +      S  +  S+     D       K   +       N++S  P+  F
Sbjct: 405 -------SAI----DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELF 453

Query: 218 GAFPVLEAFSFTTILDLTYNNLNE------QSLPGNFFMLETLRALYLGDNDFEVLPAEI 271
                L      + ++L  N L E      +    NF     L ++ L  N    L  + 
Sbjct: 454 STGSPL------SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDF 507

Query: 272 --GNLKNLQI 279
               L  L  
Sbjct: 508 RATTLPYLVG 517

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 99.7 bits (249), Expect = 3e-23
 Identities = 42/304 (13%), Positives = 87/304 (28%), Gaps = 61/304 (20%)

Query: 5   TRITLSHNKLK-EIPPGLANLVNLEILTLFNNQIE-----TLPTSLSSLPKLRILNLGMN 58
           T ++L        +P  +  L  LE+L L ++  +       P  +S+            
Sbjct: 84  TGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRM 143

Query: 59  RLSSLPRGFGAFPVLEVLDLTYNNLN----EQSLPGNFFMLETLRALYLGDNDFEVLPAE 114
                       P  +  DL  + +N    ++S+  +  +      +    N+   +   
Sbjct: 144 HYQKTF--VDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA 201

Query: 115 IGNLKNLQ------------IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASK 162
           +  L  L+             I E +  +  E  + +         +  L ++       
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDV------- 254

Query: 163 FAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPR-- 215
                       E+            +  P    T L   P++++     NR  S  +  
Sbjct: 255 ------------EV------YNCPNLTKLP----TFLKALPEMQLINVACNRGISGEQLK 292

Query: 216 -GFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNL 274
             + A           I+ + YNNL    +  +   ++ L  L    N  E      G+ 
Sbjct: 293 DDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSE 352

Query: 275 KNLQ 278
             L 
Sbjct: 353 IKLA 356

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 97.8 bits (244), Expect = 2e-22
 Identities = 45/280 (16%), Positives = 88/280 (31%), Gaps = 51/280 (18%)

Query: 10  SHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGA 69
           S  + K I       +    +   +N I  +  ++  L KLR   +G +           
Sbjct: 168 SDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFV----AENI 223

Query: 70  FPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF-EVLPAEIGNLKNLQIILETF 128
               E  +  Y    + +    +  L+ L  + + +      LP  +  L  +Q+I    
Sbjct: 224 CEAWENENSEYAQQYK-TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI---- 278

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRE-DARNSKIKF 187
               +  NR   +    +          P                E+++      + +K 
Sbjct: 279 ---NVACNR--GISGEQLKDDWQALADAPVG--------------EKIQIIYIGYNNLKT 319

Query: 188 TSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQ 242
             +     +T L K  K+ M     N+L      FG+   L        L+L YN +   
Sbjct: 320 FPV-----ETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKL------ASLNLAYNQI--T 366

Query: 243 SLPGNFF-MLETLRALYLGDNDFEVLPA--EIGNLKNLQI 279
            +P NF    E +  L    N  + +P   +  ++  +  
Sbjct: 367 EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSA 406

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 92.8 bits (231), Expect = 7e-21
 Identities = 35/305 (11%), Positives = 77/305 (25%), Gaps = 75/305 (24%)

Query: 1   MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNR 59
            L  T+I    N +  +   +  L  L    + N+                         
Sbjct: 182 TLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ---- 237

Query: 60  LSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP------- 112
             +    +     L  +++         LP     L  ++ + +  N             
Sbjct: 238 YKTEDLKWDNLKDLTDVEVYNCPNLT-KLPTFLKALPEMQLINVACNRGISGEQLKDDWQ 296

Query: 113 --AEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLME 170
             A+    + +QII        +  N  ++        +  +  L               
Sbjct: 297 ALADAPVGEKIQIIY-------IGYN--NLKTFPVETSLQKMKKL--------------- 332

Query: 171 ALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRG-FGAFPVLE 224
                L  +   +++      P           K+       N+++ +P    G    +E
Sbjct: 333 ---GML--ECLYNQL--EGKLP-----AFGSEIKLASLNLAYNQITEIPANFCGFTEQVE 380

Query: 225 AFSFTTILDLTYNNLNEQSLPGNFFM--LETLRALYLGDN--------DFEVLPAEIGNL 274
                  L   +N L  + +P  F    +  + A+    N        +F+ L       
Sbjct: 381 ------NLSFAHNKL--KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432

Query: 275 KNLQI 279
            N+  
Sbjct: 433 INVSS 437

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 92.4 bits (230), Expect = 9e-21
 Identities = 44/282 (15%), Positives = 79/282 (28%), Gaps = 64/282 (22%)

Query: 5   TRITLSHNKLKEIPP--GLANLVNLEILTLFNNQIE--------TLPTSLSSLPKLRILN 54
             ++ +HNKLK IP      ++  +  +    N+I          L  +      +  +N
Sbjct: 380 ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439

Query: 55  LGMNRLSSLPRG-FGAFPVLEVLDLTYNNLNE------QSLPGNFFMLETLRALYLGDND 107
           L  N++S  P+  F     L  ++L  N L E      +    NF     L ++ L  N 
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499

Query: 108 FEVLPAEI--GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
              L  +     L  L  I        +  N        +    +    L          
Sbjct: 500 LTKLSDDFRATTLPYLVGID-------LSYNS--FSKFPT--QPLNSSTL---------- 538

Query: 166 RGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAF 220
           +G        +R        +    +P     G+   P +       N +  +       
Sbjct: 539 KGF------GIRNQRDAQGNRTLREWP----EGITLCPSLTQLQIGSNDIRKVNEKI--T 586

Query: 221 PVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDN 262
           P +       +LD+  N      L              L  +
Sbjct: 587 PNIS------VLDIKDNPNISIDLSY-VCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 83.2 bits (206), Expect = 1e-17
 Identities = 24/132 (18%), Positives = 42/132 (31%), Gaps = 14/132 (10%)

Query: 4   ITRITLSHNKLKEIPPGLA--NLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNR-- 59
           +T I L  NKL ++        L  L  + L  N     PT   +   L+   +   R  
Sbjct: 490 LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDA 549

Query: 60  -----LSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 114
                L   P G    P L  L +  N++  + +         +  L + DN    +   
Sbjct: 550 QGNRTLREWPEGITLCPSLTQLQIGSNDI--RKVNEKI--TPNISVLDIKDNPNISIDLS 605

Query: 115 -IGNLKNLQIIL 125
            +       + +
Sbjct: 606 YVCPYIEAGMYM 617

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 80.5 bits (199), Expect = 8e-17
 Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 10/113 (8%)

Query: 1   MLYITRITLSHNKLKEIPPGLANLVNLEILTL-------FNNQIETLPTSLSSLPKLRIL 53
           + Y+  I LS+N   + P    N   L+   +        N  +   P  ++  P L  L
Sbjct: 512 LPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571

Query: 54  NLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDN 106
            +G N +  +       P + VLD+  N      L              L  +
Sbjct: 572 QIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSY-VCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 78.2 bits (193), Expect = 6e-16
 Identities = 44/314 (14%), Positives = 87/314 (27%), Gaps = 87/314 (27%)

Query: 9   LSHNKLK-----EIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSS- 62
           L  +  K       P G++  ++ E             T +   P+    +L  + ++S 
Sbjct: 112 LGSHGEKVNERLFGPKGISANMSDEQKQKMRMHY--QKTFVDYDPREDFSDLIKDCINSD 169

Query: 63  -----LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF--------- 108
                + +          +    NN+    +      L  LR  Y+G++ F         
Sbjct: 170 PQQKSIKKSSRITLKDTQIGQLSNNI--TFVSKAVMRLTKLRQFYMGNSPFVAENICEAW 227

Query: 109 -----------EVLPAEIGNLKNLQII------LETFLPDMMEKNRGHIVGISSMAGIVG 151
                      +    +  NLK+L  +        T LP                  +  
Sbjct: 228 ENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT----------------FLKA 271

Query: 152 LPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKI---KMN 208
           LP +              + +   +  +   S  +    +  + D  + +  +I     N
Sbjct: 272 LPEM--------------QLI--NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315

Query: 209 RLSSL--PRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEV 266
            L +            L       +L+  YN L        F     L +L L  N    
Sbjct: 316 NLKTFPVETSLQKMKKL------GMLECLYNQLE--GKLPAFGSEIKLASLNLAYNQITE 367

Query: 267 LPAEI-GNLKNLQI 279
           +PA   G  + ++ 
Sbjct: 368 IPANFCGFTEQVEN 381

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.3 bits (144), Expect = 8e-10
 Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 4/79 (5%)

Query: 9   LSHNKL-KEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPR-G 66
              N+  +E P G+    +L  L + +N I  +   +   P + +L++  N   S+    
Sbjct: 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSY 606

Query: 67  FGAFPVLEVLDLTYNNLNE 85
              +    +  L Y+   +
Sbjct: 607 VCPYIEAGMYMLFYDKTQD 625

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 27/259 (10%), Positives = 59/259 (22%), Gaps = 45/259 (17%)

Query: 26  NLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLS-SLPRGFGAFPVLEVLDLTYNNL- 83
           N       +        SL+S  ++  L+L     S  +P   G    LEVL L  +   
Sbjct: 59  NWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEK 118

Query: 84  --NEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIV 141
                  P       +          +      +                          
Sbjct: 119 VNERLFGPKGISANMSDEQKQKMRMHY--QKTFVDYDPREDFSDLIKD------------ 164

Query: 142 GISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCK 201
            I+S      +               +     +             T +        + +
Sbjct: 165 CINSDPQQKSIKKS----------SRITLKDTQIG-----QLSNNITFVSK-----AVMR 204

Query: 202 NPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGD 261
             K++   + +       F            +  Y    + +    +  L+ L  + + +
Sbjct: 205 LTKLRQFYMGN-----SPFVAENICEAWENENSEYAQQYK-TEDLKWDNLKDLTDVEVYN 258

Query: 262 NDF-EVLPAEIGNLKNLQI 279
                 LP  +  L  +Q+
Sbjct: 259 CPNLTKLPTFLKALPEMQL 277

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 5/57 (8%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 9   LSHNKLKEIPPGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLP 64
           +  N ++++   +    N+ +L + +N   ++  + +    +  +  L  ++   + 
Sbjct: 573 IGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIR 627

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  118 bits (297), Expect = 2e-29
 Identities = 54/294 (18%), Positives = 92/294 (31%), Gaps = 57/294 (19%)

Query: 5   TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSSL 63
             +   HNK++ +       V L  L L  NQIE +P    +   ++  L    N+L  +
Sbjct: 576 GLLDCVHNKVRHLEA-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI 634

Query: 64  PRGFGA--FPVLEVLDLTYNNL----NEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-G 116
           P  F A    V+  +D +YN +       S   + +       + L  N+ +  P E+  
Sbjct: 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFA 694

Query: 117 NLKNLQII------LETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLME 170
               +  I      + +   + ++   G+      +  I    +L               
Sbjct: 695 TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTI----DL--------------- 735

Query: 171 ALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEA 225
                      N   K TS+     D      P +       N  SS P        L+A
Sbjct: 736 ---------RFN---KLTSLSD---DFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKA 780

Query: 226 FSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
           F      D   N +     P       +L  L +G ND   +  ++     L I
Sbjct: 781 FGIRHQRDAEGNRILR-QWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYI 831

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  113 bits (284), Expect = 1e-27
 Identities = 45/290 (15%), Positives = 81/290 (27%), Gaps = 50/290 (17%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTS--LSSLPKLRILNLGMNRLS 61
                        +         ++I  +  N +E  P S  L  + KL +L+   N++ 
Sbjct: 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR 586

Query: 62  SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDFEVLP--AEIGNL 118
            L   FG    L  L L YN +  + +P +F    + +  L    N  + +P      ++
Sbjct: 587 HLE-AFGTNVKLTDLKLDYNQI--EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSV 643

Query: 119 KNLQIILETFLPDMMEKNR--GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
             +  +           N+       IS         N                     +
Sbjct: 644 YVMGSV-------DFSYNKIGSEGRNISCSMDDYKGINA------------------STV 678

Query: 177 REDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFT-- 229
                 S  +       +          I       N ++S+P            +    
Sbjct: 679 TL----SYNEIQKFPTEL----FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730

Query: 230 TILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
           T +DL +N L   S       L  L  + +  N F   P +  N   L+ 
Sbjct: 731 TTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKA 780

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  109 bits (275), Expect = 2e-26
 Identities = 51/333 (15%), Positives = 95/333 (28%), Gaps = 80/333 (24%)

Query: 2   LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQI--------------------ETLP 41
           L  T+I    N++  I   +  L  L+I+   N+                      E   
Sbjct: 425 LKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE 484

Query: 42  TSLSSLPKLRILNL-GMNRLSSLPRGFGAFPVLEVLDLTYNNL--------NEQSLPGNF 92
            S S+L  L  + L     ++ LP      P L+ L++  N          +   L  + 
Sbjct: 485 LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDE 544

Query: 93  FMLETLRALYLGDNDFEVLPAE--IGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIV 150
                ++  Y+G N+ E  PA   +  +  L ++           N+     +  +    
Sbjct: 545 DTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLL-------DCVHNK-----VRHLEAFG 592

Query: 151 GLPNL------------VPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG 198
               L            +P      A    +E L         ++K+      P + +  
Sbjct: 593 TNVKLTDLKLDYNQIEEIP--EDFCAFTDQVEGL------GFSHNKL---KYIPNIFNAK 641

Query: 199 LCKNPK---IKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFF-MLETL 254
                       N++ S  R              + + L+YN +  Q  P   F     +
Sbjct: 642 SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI--QKFPTELFATGSPI 699

Query: 255 RALYLGDNDFEVLPAE--------IGNLKNLQI 279
             + L +N    +P            N   L  
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTT 732

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 99.6 bits (248), Expect = 4e-23
 Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 20/142 (14%)

Query: 1   MLYITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLP--------TSLSSLPKLR 51
            +  + +TLS+N++++ P    A    +  + L NN + ++P         +  +   L 
Sbjct: 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT 731

Query: 52  ILNLGMNRLSSLPR--GFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF- 108
            ++L  N+L+SL         P L  +D++YN     S P        L+A  +      
Sbjct: 732 TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF--SSFPTQPLNSSQLKAFGIRHQRDA 789

Query: 109 ------EVLPAEIGNLKNLQII 124
                    P  I    +L  +
Sbjct: 790 EGNRILRQWPTGITTCPSLIQL 811

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 94.6 bits (235), Expect = 2e-21
 Identities = 40/280 (14%), Positives = 84/280 (30%), Gaps = 49/280 (17%)

Query: 9   LSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFG 68
             + ++K I       +    +    N+I  +  ++  L KL+I+    +  +       
Sbjct: 409 NRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVD 468

Query: 69  AFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF-EVLPAEIGNLKNLQIILET 127
                E  +  Y    E +   ++  L+ L  + L +      LP  + +L  LQ +   
Sbjct: 469 ----WEDANSDYAKQYE-NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN-- 521

Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
                +  NR            +    L                + +        + +  
Sbjct: 522 -----IACNR-----------GISAAQLKADWTRLADDEDTGPKI-QIF--YMGYNNL-- 560

Query: 188 TSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQ 242
                      L K  K+ +     N++  L   FG    L      T L L YN +  +
Sbjct: 561 EEF---PASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKL------TDLKLDYNQI--E 608

Query: 243 SLPGNFF-MLETLRALYLGDNDFEVLP--AEIGNLKNLQI 279
            +P +F    + +  L    N  + +P      ++  +  
Sbjct: 609 EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGS 648

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 93.8 bits (233), Expect = 4e-21
 Identities = 45/282 (15%), Positives = 80/282 (28%), Gaps = 63/282 (22%)

Query: 4   ITRITLSHNKLKEIPP--GLANLVNLEILTLFNNQIETLPTSLSS------LPKLRILNL 55
           +  +  SHNKLK IP      ++  +  +    N+I +   ++S             + L
Sbjct: 621 VEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680

Query: 56  GMNRLSSLPRG-FGAFPVLEVLDLTYNNLNE------QSLPGNFFMLETLRALYLGDNDF 108
             N +   P   F     +  + L+ N +        +   GN+     L  + L  N  
Sbjct: 681 SYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL 740

Query: 109 EVLPAEI--GNLKNLQIILETFLPDMMEKNRGHIVGISSM-AGIVGLPNLVPYCASKFAV 165
             L  +     L  L  +        +  N       SS     +    L          
Sbjct: 741 TSLSDDFRATTLPYLSNMD-------VSYNC-----FSSFPTQPLNSSQL---------- 778

Query: 166 RGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAF 220
               +A    +R        +    +P    TG+   P +       N +  +       
Sbjct: 779 ----KAF--GIRHQRDAEGNRILRQWP----TGITTCPSLIQLQIGSNDIRKVDEKL--T 826

Query: 221 PVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDN 262
           P L       ILD+  N      +      +E    + L D 
Sbjct: 827 PQL------YILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 88.0 bits (218), Expect = 3e-19
 Identities = 43/300 (14%), Positives = 77/300 (25%), Gaps = 49/300 (16%)

Query: 4   ITRITLSHNKLK-EIPPGLANLVNLEILTLFNNQIETLP--TSLSSLPKLRILNLGMNRL 60
           +T ++L+    K  +P  +  L  L++L+   +             L             
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 61  SSLPRGFGAFP-VLEVLDLTYNNLNE----QSLPGNFFMLETLRALYLGDNDFEVLPAEI 115
               + F  +   L + DL  + +N     + +  +  +      +    N    +   I
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI 444

Query: 116 GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEE 175
             L  LQII           +                   V +  +        E     
Sbjct: 445 QRLTKLQII-------YFANSP-----------FTYDNIAVDWEDANSDYAKQYENEELS 486

Query: 176 LRE-------DARNSKIKFTSIFPFMVDTGLCKNPKIK-----MNRLSSLPRGFGAFPVL 223
                     +  N      +  P      L   P+++      NR  S  +    +  L
Sbjct: 487 WSNLKDLTDVELYNCPN--MTQLP----DFLYDLPELQSLNIACNRGISAAQLKADWTRL 540

Query: 224 EAFSFT----TILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
                T     I  + YNNL E     +   +  L  L    N    L    G    L  
Sbjct: 541 ADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTD 599

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 82.6 bits (204), Expect = 2e-17
 Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 9/113 (7%)

Query: 1   MLYITRITLSHNKLKEIPPGLANLVNLEILTL-------FNNQIETLPTSLSSLPKLRIL 53
           + Y++ + +S+N     P    N   L+   +        N  +   PT +++ P L  L
Sbjct: 752 LPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL 811

Query: 54  NLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDN 106
            +G N +  +       P L +LD+  N      +      +E    + L D 
Sbjct: 812 QIGSNDIRKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 79.9 bits (197), Expect = 1e-16
 Identities = 46/292 (15%), Positives = 84/292 (28%), Gaps = 41/292 (14%)

Query: 10  SHNKLKEIPP-GLANLVNLEILTLFNNQIET-LPTSLSSLPKLRILNLGMNRLSSLPRGF 67
             +   + P   L N   +  L+L     +  +P ++  L +L++L+ G +  +   R F
Sbjct: 307 ELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLF 366

Query: 68  GAFPVLEVLDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDFEVLPAEIGNLKNLQIILE 126
           G   +   +     +         F    + L    L  +     P E+  +K    I  
Sbjct: 367 GDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP-EMKPIKKDSRISL 425

Query: 127 TFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRG--LMEALAEELREDARNSK 184
                    NR  I  IS    I  L  L                        EDA +  
Sbjct: 426 KDTQIGNLTNR--ITFISK--AIQRLTKL-----QIIYFANSPFTYDNIAVDWEDANSDY 476

Query: 185 IKFTSIFPFMVDTGLCKNPKIK------MNRLSSLPRGFGAFPVLEAFSFTTILDLTYNN 238
            K                  +          ++ LP      P L+       L++  N 
Sbjct: 477 AKQYENEE----LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ------SLNIACNR 526

Query: 239 L--------NEQSLPGNFFMLETLRALYLGDNDFEVLPAE--IGNLKNLQIM 280
                    +   L  +      ++  Y+G N+ E  PA   +  +  L ++
Sbjct: 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLL 578

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  112 bits (283), Expect = 8e-29
 Identities = 57/284 (20%), Positives = 85/284 (29%), Gaps = 47/284 (16%)

Query: 5   TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSL--PKLRILNLGMNRLSS 62
            R   +           AN  N +I T     ++     L     P    L L    L  
Sbjct: 36  QRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ 95

Query: 63  LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 122
            P        L+ + +    L    LP        L  L L  N    LPA I +L  L+
Sbjct: 96  FPDQAFRLSHLQHMTIDAAGL--MELPDTMQQFAGLETLTLARNPLRALPASIASLNRLR 153

Query: 123 IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRE-DAR 181
            +       +                +  LP  +    +    +GL       L+     
Sbjct: 154 EL------SIRACPE-----------LTELPEPLASTDASGEHQGL-----VNLQSLRLE 191

Query: 182 NSKIKF--TSIFPFMVDTGLCKNPK---IKMNRLSSLPRGFGAFPVLEAFSFTTILDLTY 236
            + I+    SI          +N K   I+ + LS+L       P LE       LDL  
Sbjct: 192 WTGIRSLPASI-------ANLQNLKSLKIRNSPLSALGPAIHHLPKLE------ELDLRG 238

Query: 237 NNLNEQSLPGNFFMLETLRALYLGD-NDFEVLPAEIGNLKNLQI 279
                 + P  F     L+ L L D ++   LP +I  L  L+ 
Sbjct: 239 CTALR-NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK 281

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  101 bits (253), Expect = 1e-24
 Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 5/124 (4%)

Query: 5   TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNL-GMNRLSSL 63
             + L    ++ +P  +ANL NL+ L + N+ +  L  ++  LPKL  L+L G   L + 
Sbjct: 186 QSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY 245

Query: 64  PRGFGAFPVLEVLDLT-YNNLNEQSLPGNFFMLETLRALYLGDN-DFEVLPAEIGNLKNL 121
           P  FG    L+ L L   +NL   +LP +   L  L  L L    +   LP+ I  L   
Sbjct: 246 PPIFGGRAPLKRLILKDCSNL--LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303

Query: 122 QIIL 125
            IIL
Sbjct: 304 CIIL 307

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 83.1 bits (206), Expect = 4e-18
 Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 3/106 (2%)

Query: 9   LSHNKLKEIPPGLANLVNLEILTLF-NNQIETLPTSLSSLPKLRILNL-GMNRLSSLPRG 66
           + ++ L  + P + +L  LE L L     +   P        L+ L L   + L +LP  
Sbjct: 213 IRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD 272

Query: 67  FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP 112
                 LE LDL    +N   LP     L     + +  +    L 
Sbjct: 273 IHRLTQLEKLDL-RGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 12  NKLKEIPPGLANLVNLEILTLFNN-QIETLPTSLSSLPKLRILNLGMNRLSSLPR 65
           + L  +P  +  L  LE L L     +  LP+ ++ LP   I+ +  +  + L +
Sbjct: 264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  111 bits (279), Expect = 3e-28
 Identities = 54/283 (19%), Positives = 93/283 (32%), Gaps = 61/283 (21%)

Query: 4   ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSS 62
           +  + LS N L +I    LA    LE+L L +N +      L SL  LR L+L  N +  
Sbjct: 36  VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQE 94

Query: 63  LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNL 121
           L  G    P +E L    NN++   +  +       + +YL +N   +L   + G    +
Sbjct: 95  LLVG----PSIETLHAANNNIS--RVSCSRGQG--KKNIYLANNKITMLRDLDEGCRSRV 146

Query: 122 QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDAR 181
           Q +        ++ N   I  ++          L                  E L  + +
Sbjct: 147 QYL-------DLKLNE--IDTVNFAELAASSDTL------------------EHL--NLQ 177

Query: 182 NSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFTTILDLTY 236
            + I    +       G     K+K      N+L+ +   F +   +        + L  
Sbjct: 178 YNFI--YDV------KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVT------WISLRN 223

Query: 237 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
           N L    +       + L    L  N F          KN ++
Sbjct: 224 NKL--VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  106 bits (266), Expect = 2e-26
 Identities = 44/278 (15%), Positives = 92/278 (33%), Gaps = 52/278 (18%)

Query: 4   ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLS 61
                ++ + LK+       +  N++ L L  N +  +    L+   KL +LNL  N L 
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 62  SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIG-NLKN 120
                  +   L  LDL  N +  Q L        ++  L+  +N+   +    G   KN
Sbjct: 72  ETL-DLESLSTLRTLDLNNNYV--QELLV----GPSIETLHAANNNISRVSCSRGQGKKN 124

Query: 121 LQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDA 180
           +           +  N+  I  +  +        +                  + L  D 
Sbjct: 125 IY----------LANNK--ITMLRDLD-EGCRSRV------------------QYL--DL 151

Query: 181 RNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLN 240
           + ++I   +       +   ++  ++ N +  +      F  L+       LDL+ N L 
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLK------TLDLSSNKL- 203

Query: 241 EQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 278
              +   F     +  + L +N   ++   +   +NL+
Sbjct: 204 -AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLE 240

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 88.9 bits (221), Expect = 3e-20
 Identities = 18/122 (14%), Positives = 44/122 (36%), Gaps = 3/122 (2%)

Query: 5   TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP 64
             + L +N + ++         L+ L L +N++  +     S   +  ++L  N+L  + 
Sbjct: 172 EHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE 230

Query: 65  RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQII 124
           +       LE  DL  N  +  +L   F   + ++ +       + L  +      +  +
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK--QTVKKLTGQNEEECTVPTL 288

Query: 125 LE 126
             
Sbjct: 289 GH 290

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 73.9 bits (182), Expect = 5e-15
 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 14  LKEIPPGLANLVNLEILTLFNNQIETLPTS-LSSLPKLRILNLGMNRLSSLPRG-FGAFP 71
           + EI     N    +I  + ++ ++    S   S   ++ L+L  N LS +       F 
Sbjct: 2   IHEIKQ---NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT 58

Query: 72  VLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 122
            LE+L+L+ N L E     +   L TLR L L +N  +    E+    +++
Sbjct: 59  KLELLNLSSNVLYE---TLDLESLSTLRTLDLNNNYVQ----ELLVGPSIE 102

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 37/243 (15%), Positives = 73/243 (30%), Gaps = 52/243 (21%)

Query: 40  LPTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LET 97
           +     +  + +I  +  + L         +   ++ LDL+ N L    +          
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL--SQISAADLAPFTK 59

Query: 98  LRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVP 157
           L  L L  N       ++ +L  L+ +        +  N      +     ++  P++  
Sbjct: 60  LELLNLSSNVLYETL-DLESLSTLRTL-------DLNNNY-----VQE---LLVGPSI-- 101

Query: 158 YCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG- 216
                           E L   A N+ I   S        G  KN  +  N+++ L    
Sbjct: 102 ----------------ETL--HAANNNI---SRVSCSRGQGK-KNIYLANNKITMLRDLD 139

Query: 217 FGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKN 276
            G    +        LDL  N ++  +        +TL  L L  N    +  ++     
Sbjct: 140 EGCRSRV------QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAK 192

Query: 277 LQI 279
           L+ 
Sbjct: 193 LKT 195

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 23/106 (21%), Positives = 33/106 (31%), Gaps = 5/106 (4%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
           +T I+L +NKL  I   L    NLE   L  N               R+  +    +  L
Sbjct: 216 VTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275

Query: 64  PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE 109
                    +  L   Y     + LP  F      R + LG +   
Sbjct: 276 TGQNEEECTVPTLGH-YGAYCCEDLPAPFA----DRLIALGHHHHH 316

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  112 bits (283), Expect = 2e-27
 Identities = 68/309 (22%), Positives = 109/309 (35%), Gaps = 51/309 (16%)

Query: 4   ITRITLSHNKLK-EIPPGLANLVNLEILTLFNNQIE-TLPTSLSSLPKLRILNLGMNRLS 61
           +  + L +N    +IPP L+N   L  L L  N +  T+P+SL SL KLR L L +N L 
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455

Query: 62  -SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLK 119
             +P+       LE L L +N+L    +P        L  + L +N     +P  IG L+
Sbjct: 456 GEIPQELMYVKTLETLILDFNDL-TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514

Query: 120 NLQIILETFLPDMMEKNR--GHI-VGISSM------------------AGIVGLPNLVPY 158
           NL I+        +  N   G+I   +                     A +      +  
Sbjct: 515 NLAILK-------LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 567

Query: 159 CASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIK-----MNRLS-S 212
                     ++    +       + ++F  I        L +                 
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS----EQLNRLSTRNPCNITSRVYGGH 623

Query: 213 LPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEI 271
               F     +        LD++YN L    +P     +  L  L LG ND    +P E+
Sbjct: 624 TSPTFDNNGSM------MFLDMSYNML-SGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676

Query: 272 GNLKNLQIM 280
           G+L+ L I+
Sbjct: 677 GDLRGLNIL 685

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 95.0 bits (237), Expect = 1e-21
 Identities = 66/284 (23%), Positives = 101/284 (35%), Gaps = 56/284 (19%)

Query: 9   LSHNKLK-EIPPGLANLVNLEILTLFNNQIE-TLPTSLS-SLPKLRILNLGMNRLS-SLP 64
           +S N+    IPP    L +L+ L+L  N+    +P  LS +   L  L+L  N    ++P
Sbjct: 254 ISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311

Query: 65  RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQI 123
             FG+  +LE L L+ NN + +        +  L+ L L  N+F   LP  +    NL  
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT---NLSA 368

Query: 124 ILETFLPDMMEKNRGHIVG-ISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARN 182
            L T     +  N  +  G I           L      +  +                 
Sbjct: 369 SLLTL---DLSSN--NFSGPILPNLCQNPKNTL-----QELYL----------------- 401

Query: 183 SKIKFTSIFPFMVDTGLCKNPKIKM-----NRLS-SLPRGFGAFPVLEAFSFTTILDLTY 236
               FT   P      L    ++       N LS ++P   G+   L        L L  
Sbjct: 402 QNNGFTGKIP----PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR------DLKLWL 451

Query: 237 NNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQI 279
           N L    +P     ++TL  L L  ND    +P+ + N  NL  
Sbjct: 452 NMLEG-EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 86.1 bits (214), Expect = 1e-18
 Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 9/128 (7%)

Query: 5   TRITLSHNKLK-EIPPGLANLVNLEILTLFNNQIE-TLPT-SLSSLPKLRILNLGMNRLS 61
           T + LS N     +PP   +   LE L L +N     LP  +L  +  L++L+L  N  S
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356

Query: 62  -SLPRGFGAFPV-LEVLDLTYNNLNEQSLPGNFF--MLETLRALYLGDNDFE-VLPAEIG 116
             LP         L  LDL+ NN +   +  N       TL+ LYL +N F   +P  + 
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFS-GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415

Query: 117 NLKNLQII 124
           N   L  +
Sbjct: 416 NCSELVSL 423

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 83.8 bits (208), Expect = 7e-18
 Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 7/120 (5%)

Query: 9   LSHNKLKEIPPGLANLVNLEILTLFNNQIE-TLPTSLSSLPKLRILNLGMNRLS-SLPRG 66
           +S N      P L +   L+ L +  N++      ++S+  +L++LN+  N+    +P  
Sbjct: 207 VSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP- 265

Query: 67  FGAFPVLEVLDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDFE-VLPAEIGNLKNLQII 124
                 L+ L L  N      +P       +TL  L L  N F   +P   G+   L+ +
Sbjct: 266 -LPLKSLQYLSLAENKFTG-EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 73.8 bits (182), Expect = 1e-14
 Identities = 30/132 (22%), Positives = 46/132 (34%), Gaps = 11/132 (8%)

Query: 4   ITRITLSHNKLK----EIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNR 59
           +T I LS   L      +   L +L  LE L L N+ I    +       L  L+L  N 
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNS 111

Query: 60  LS-SLP--RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEI 115
           LS  +      G+   L+ L+++ N L+          L +L  L L  N          
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171

Query: 116 ---GNLKNLQII 124
                   L+ +
Sbjct: 172 VLSDGCGELKHL 183

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 72.2 bits (178), Expect = 5e-14
 Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 13/123 (10%)

Query: 9   LSHNKL-KEIPPGLA---NLVNLEILTLFNNQIE-TLPTSLSSLPKLRILNLGMNRLS-S 62
           LS N +      G         L+ L +  N+I   +   +S    L  L++  N  S  
Sbjct: 158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTG 215

Query: 63  LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNL 121
           +P   G    L+ LD++ N L+             L+ L +  N F   +P     LK+L
Sbjct: 216 IP-FLGDCSALQHLDISGNKLSG-DFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSL 271

Query: 122 QII 124
           Q +
Sbjct: 272 QYL 274

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 70.3 bits (173), Expect = 2e-13
 Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 12/131 (9%)

Query: 3   YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIE-TLPT--SLSSLPKLRILNLGMNR 59
            +  + LS++ +     G     +L  L L  N +   + T  SL S   L+ LN+  N 
Sbjct: 78  GLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNT 137

Query: 60  LS-SLPRGFGA-FPVLEVLDLTYNNLNEQSLPGNFFM---LETLRALYLGDNDFE-VLPA 113
           L        G     LEVLDL+ N+++  +    + +      L+ L +  N     +  
Sbjct: 138 LDFPGKVSGGLKLNSLEVLDLSANSIS-GANVVGWVLSDGCGELKHLAISGNKISGDVD- 195

Query: 114 EIGNLKNLQII 124
            +    NL+ +
Sbjct: 196 -VSRCVNLEFL 205

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 68.0 bits (167), Expect = 1e-12
 Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 4/109 (3%)

Query: 4   ITRITLSHNKLK-EIPPGLANLVNLEILTLFNNQIE-TLPTSLSSLPKLRILNLGMNRLS 61
                ++         P   N  ++  L +  N +   +P  + S+P L ILNLG N +S
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669

Query: 62  -SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE 109
            S+P   G    L +LDL+ N L+   +P     L  L  + L +N+  
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLD-GRIPQAMSALTMLTEIDLSNNNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 230 TILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQIM 280
             LD++ NN +   +P        L+ L +  N         I     L+++
Sbjct: 203 EFLDVSSNNFS-TGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  111 bits (279), Expect = 4e-27
 Identities = 56/288 (19%), Positives = 90/288 (31%), Gaps = 49/288 (17%)

Query: 2   LYITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRL 60
           + +  I L  +    I          L+ L L    +  LP+ L  L  L+ L L  N+ 
Sbjct: 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKF 313

Query: 61  SSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA---EIG 116
            +L +     FP L  L +  N    +   G    LE LR L L  +D E       ++ 
Sbjct: 314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           NL +LQ +        +  N    + + + A     P L                  E L
Sbjct: 374 NLSHLQSLN-------LSYNE--PLSLKTEA-FKECPQL------------------ELL 405

Query: 177 REDARNSKIKFTSIFPFMVDTGLC--KNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILD 233
             D   +++             L   K   +  + L       F   P L+       L+
Sbjct: 406 --DLAFTRL--KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ------HLN 455

Query: 234 LTYNNLNE--QSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQ 278
           L  N+  +       +   L  L  L L   D   +      +LK + 
Sbjct: 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN 503

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  105 bits (263), Expect = 4e-25
 Identities = 48/288 (16%), Positives = 86/288 (29%), Gaps = 29/288 (10%)

Query: 4   ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLS 61
              +  S N L  I     + L+NL  L L   QI  +   +  S  +L  L L  N L 
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94

Query: 62  SLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPA-EIGNL 118
            +          L+ L      ++  S+        +TL +LYLG N    +   +    
Sbjct: 95  FMAETALSGPKALKHLFFIQTGIS--SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152

Query: 119 KNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNL------VPYCASKFAVRGLMEAL 172
           + L+++         + N   I  +S    +  L         +          G  ++ 
Sbjct: 153 EKLKVLD-------FQNNA--IHYLSKED-MSSLQQATNLSLNLNGNDIAGIEPGAFDSA 202

Query: 173 A-EELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTI 231
             + L      + +             L      +      +      F  L   S  + 
Sbjct: 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLG-TFEDMDDEDISP--AVFEGLCEMSVES- 258

Query: 232 LDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
           ++L  +     S    F     L+ L L       LP+ +  L  L+ 
Sbjct: 259 INLQKHYFFNIS-SNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKK 305

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  100 bits (252), Expect = 1e-23
 Identities = 54/282 (19%), Positives = 85/282 (30%), Gaps = 53/282 (18%)

Query: 9   LSHNKLKEIPPG-LANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRG 66
           L+ N L  +    L+    L+ L      I ++    L +   L  L LG N +SS+   
Sbjct: 88  LTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP 147

Query: 67  -FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYL--GDNDFEVLPAEIGNLKNLQI 123
                  L+VLD   N ++  S   +   L+    L L    ND   +     +    Q 
Sbjct: 148 KGFPTEKLKVLDFQNNAIHYLS-KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQS 206

Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNS 183
           +          +N   I      + I  L                             + 
Sbjct: 207 LNFGGT-----QNLLVIFKGLKNSTIQSLWLG-----------------------TFEDM 238

Query: 184 KIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRG-FGAFPVLEAFSFTTILDLTYN 237
             +  S   F           ++      +   ++    F  F  L+       LDLT  
Sbjct: 239 DDEDISPAVF----EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQ------ELDLTAT 288

Query: 238 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQ 278
           +L+   LP     L TL+ L L  N FE L      N  +L 
Sbjct: 289 HLS--ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT 328

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 97.0 bits (242), Expect = 2e-22
 Identities = 59/294 (20%), Positives = 96/294 (32%), Gaps = 56/294 (19%)

Query: 1   MLYITRITLSHNK-LKEIPPGLAN--LVNLEILTLFNNQIETLPTSL---SSLPKLRILN 54
                 +     + L  I  GL N  + +L + T  +   E +  ++        +  +N
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260

Query: 55  LGMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA 113
           L  +   ++    F  F  L+ LDLT  +L+   LP     L TL+ L L  N FE L  
Sbjct: 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLS--ELPSGLVGLSTLKKLVLSANKFENLCQ 318

Query: 114 E-IGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEAL 172
               N  +L  +        ++ N            +  L NL                 
Sbjct: 319 ISASNFPSLTHLS-------IKGN--TKRLELGTGCLENLENL----------------- 352

Query: 173 AEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRG-FGAFPVLEAF 226
             EL  D  +  I+ +          L     ++      N   SL    F   P LE  
Sbjct: 353 -REL--DLSHDDIETSDCCNLQ----LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE-- 403

Query: 227 SFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQI 279
               +LDL +  L  +     F  L  L+ L L  +  ++   ++   L  LQ 
Sbjct: 404 ----LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH 453

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 93.9 bits (234), Expect = 2e-21
 Identities = 58/284 (20%), Positives = 92/284 (32%), Gaps = 69/284 (24%)

Query: 5   TRITLSHNKLK-EIPPG-LANLVNLEILTLFNNQIETLP---TSLSSLPKLRILNLGMNR 59
           T +++  N  + E+  G L NL NL  L L ++ IET       L +L  L+ LNL  N 
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387

Query: 60  LSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GN 117
             SL    F   P LE+LDL +  L  +     F  L  L+ L L  +  ++   ++   
Sbjct: 388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG 447

Query: 118 LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELR 177
           L  LQ +        ++ N      I     +  L  L                  E L 
Sbjct: 448 LPALQHLN-------LQGNHFPKGNIQKTNSLQTLGRL------------------EIL- 481

Query: 178 EDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILDLTY 236
                                           LSS+ +  F +  ++        +DL++
Sbjct: 482 -VLSF-------------------------CDLSSIDQHAFTSLKMMN------HVDLSH 509

Query: 237 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQI 279
           N L   S             L L  N   ++   +   L   + 
Sbjct: 510 NRL--TSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRT 551

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 93.2 bits (232), Expect = 5e-21
 Identities = 54/281 (19%), Positives = 86/281 (30%), Gaps = 53/281 (18%)

Query: 9   LSHNKLKEIPPG-LANLVNLEILTLFNNQIETL-PTSLSSLPKLRI--LNLGMNRLSSLP 64
           L  N +  I          L++L   NN I  L    +SSL +     LNL  N ++ + 
Sbjct: 136 LGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIE 195

Query: 65  RGFGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEI-GNLKNLQ 122
            G     V + L+            G     +++L      D D E +   +   L  + 
Sbjct: 196 PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255

Query: 123 IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARN 182
           +             + +   ISS         L                  +EL  D   
Sbjct: 256 VESINL-------QKHYFFNISSNT-FHCFSGL------------------QEL--DLTA 287

Query: 183 SKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRG-FGAFPVLEAFSFTTILDLTY 236
           + +         + +GL     +K      N+  +L +     FP L        L +  
Sbjct: 288 THLS-------ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT------HLSIKG 334

Query: 237 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL 277
           N    +   G    LE LR L L  +D E        L+NL
Sbjct: 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 91.6 bits (228), Expect = 2e-20
 Identities = 47/278 (16%), Positives = 94/278 (33%), Gaps = 23/278 (8%)

Query: 9   LSHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRG- 66
             +  L EIP  L N  + E L    N + T+  T+ S L  L  L+L   ++  +    
Sbjct: 19  CENLGLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT 76

Query: 67  FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAE-IGNLKNLQII 124
           F +   L+ L LT N L    +        + L+ L+        +    + N K L+ +
Sbjct: 77  FQSQHRLDTLVLTANPL--IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESL 134

Query: 125 LETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSK 184
                   +  N  HI  I           L        A+  L +     L++ A N  
Sbjct: 135 Y-------LGSN--HISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ-ATNLS 183

Query: 185 IKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSL 244
           +         ++ G   +   +             F  L+  +  ++   T+ +++++ +
Sbjct: 184 LNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243

Query: 245 PGNFFM---LETLRALYLGDNDFEVLPAEI-GNLKNLQ 278
               F      ++ ++ L  + F  + +        LQ
Sbjct: 244 SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQ 281

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 84.7 bits (210), Expect = 3e-18
 Identities = 51/295 (17%), Positives = 100/295 (33%), Gaps = 63/295 (21%)

Query: 4   ITRITLSHNKLKEIPP----GLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMN 58
           +   T      ++I P    GL  + ++E + L  +    +   +      L+ L+L   
Sbjct: 230 LWLGTFEDMDDEDISPAVFEGLCEM-SVESINLQKHYFFNISSNTFHCFSGLQELDLTAT 288

Query: 59  RLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDN--DFEVLPAEI 115
            LS LP G      L+ L L+ N    ++L         +L  L +  N    E+    +
Sbjct: 289 HLSELPSGLVGLSTLKKLVLSANKF--ENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346

Query: 116 GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEE 175
            NL+NL+ +        +  +        ++  +  L +L                  + 
Sbjct: 347 ENLENLREL-------DLSHDDIETSDCCNLQ-LRNLSHL------------------QS 380

Query: 176 LREDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRG--FGAFPVLEAFSF 228
           L  +   ++    S+          + P++++      RL        F    +L     
Sbjct: 381 L--NLSYNEP--LSLKT----EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL----- 427

Query: 229 TTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF----EVLPAEIGNLKNLQI 279
             +L+L+++ L+  S    F  L  L+ L L  N F          +  L  L+I
Sbjct: 428 -KVLNLSHSLLDI-SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 81.2 bits (201), Expect = 4e-17
 Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 9/128 (7%)

Query: 4   ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETL----PTSLSSLPKLRILNLGMN 58
           +  + LSH+ L          L  L+ L L  N           SL +L +L IL L   
Sbjct: 427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486

Query: 59  RLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-G 116
            LSS+ +  F +  ++  +DL++N L   S             L L  N   ++   +  
Sbjct: 487 DLSSIDQHAFTSLKMMNHVDLSHNRL--TSSSIEALSHLKGIYLNLASNHISIILPSLLP 544

Query: 117 NLKNLQII 124
            L   + I
Sbjct: 545 ILSQQRTI 552

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 74.3 bits (183), Expect = 8e-15
 Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 6/106 (5%)

Query: 9   LSHNKLKEI----PPGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSL 63
           L  N   +        L  L  LEIL L    + ++   + +SL  +  ++L  NRL+S 
Sbjct: 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515

Query: 64  PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE 109
                +      L+L  N++    LP    +L   R + L  N  +
Sbjct: 516 SIEALSHLKGIYLNLASNHI-SIILPSLLPILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 33/233 (14%), Positives = 63/233 (27%), Gaps = 68/233 (29%)

Query: 51  RILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEV 110
           +  N     L+ +P         E L+ ++N L        F  L  L  L L       
Sbjct: 15  KTYNCENLGLNEIPGTL--PNSTECLEFSFNVLPTIQ-NTTFSRLINLTFLDLTRCQIYW 71

Query: 111 LPAE-IGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLM 169
           +  +   +   L  +       ++  N   ++ ++  A + G   L              
Sbjct: 72  IHEDTFQSQHRLDTL-------VLTANP--LIFMAETA-LSGPKAL-------------- 107

Query: 170 EALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSF 228
               + L                        +        +SS+          LE    
Sbjct: 108 ----KHLF---------------------FIQT------GISSIDFIPLHNQKTLE---- 132

Query: 229 TTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQIM 280
              L L  N+++        F  E L+ L   +N    L  E + +L+    +
Sbjct: 133 --SLYLGSNHISSIK-LPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 24/106 (22%), Positives = 36/106 (33%), Gaps = 5/106 (4%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSS 62
           +  + LSHN+L        + +    L L +N I  + P+ L  L + R +NL  N L  
Sbjct: 502 MNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

Query: 63  LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF 108
                     LE        L +            LR + L D   
Sbjct: 562 TC---SNIYFLEWYKENMQKLEDTEDT-LCENPPLLRGVRLSDVTL 603

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  109 bits (274), Expect = 2e-26
 Identities = 65/303 (21%), Positives = 103/303 (33%), Gaps = 56/303 (18%)

Query: 4   ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLS 61
           IT + L+HN+L+ +P         L  L +  N I  L P     LP L++LNL  N LS
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 62  SLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLK 119
            L    F     L  L L  N++ +      F   + L  L L  N            L+
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE 145

Query: 120 NLQII------LETFLPDMMEKNRG-----------HIVGISSMAGIVGLPNLVPYCASK 162
           NLQ +      ++    + ++                I   S       +  L       
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC-FHAIGRL------- 197

Query: 163 FAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIK-----MNRLSSLPRGF 217
                        L      + ++        +   L  N  I+      ++LS+     
Sbjct: 198 -----------FGL----FLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSN-- 239

Query: 218 GAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIGNLKN 276
             F  L+  + T  LDL+YNNLN      +F  L  L   +L  N+ + L    +  L N
Sbjct: 240 TTFLGLKWTNLTM-LDLSYNNLNVVG-NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN 297

Query: 277 LQI 279
           ++ 
Sbjct: 298 VRY 300

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  100 bits (252), Expect = 2e-23
 Identities = 61/284 (21%), Positives = 98/284 (34%), Gaps = 57/284 (20%)

Query: 9   LSHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRG- 66
            SH KL ++P  L    N+ +L L +NQ+  L   + +   +L  L++G N +S L    
Sbjct: 11  CSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL 68

Query: 67  FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQIIL 125
               P+L+VL+L +N L++ S    F     L  L+L  N  + +        KNL  + 
Sbjct: 69  CQKLPMLKVLNLQHNELSQLS-DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL- 126

Query: 126 ETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKI 185
                  +  N   +         V L NL                  +EL     N+KI
Sbjct: 127 ------DLSHN--GLSSTKLGT-QVQLENL------------------QEL--LLSNNKI 157

Query: 186 KFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRG-FGAFPVLEAFSFTTILDLTYNNL 239
           +            +  N  +K      N++     G F A   L        L L    L
Sbjct: 158 QALKSEEL----DIFANSSLKKLELSSNQIKEFSPGCFHAIGRL------FGLFLNNVQL 207

Query: 240 NEQSLPGNFFM---LETLRALYLGDNDFEVLPAEI-GNLKNLQI 279
              SL     +     ++R L L ++            LK   +
Sbjct: 208 GP-SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 250

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 97.8 bits (244), Expect = 2e-22
 Identities = 65/294 (22%), Positives = 108/294 (36%), Gaps = 54/294 (18%)

Query: 4   ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETL---PTSLSSLP--KLRILNLGM 57
           +  + +  N +  I       L+NL+ L+L N+          +  SL    L ILNL  
Sbjct: 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK 390

Query: 58  NRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-I 115
           N++S +    F     LEVLDL  N + ++     +  LE +  +YL  N +  L     
Sbjct: 391 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 450

Query: 116 GNLKNLQIILETFLPDMMEKNRGHIVGISSMAG-IVGLPNLVPYCASKFAVRGLMEALAE 174
             + +LQ +       M+ +    +  + S       L NL                   
Sbjct: 451 ALVPSLQRL-------MLRRVA--LKNVDSSPSPFQPLRNL------------------T 483

Query: 175 ELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFT 229
            L  D  N+ I   +I   M    L    K+++     N L+ L +       +      
Sbjct: 484 IL--DLSNNNI--ANINDDM----LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL 535

Query: 230 T---ILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQI 279
           +   IL+L  N  +E      F  L  L+ + LG N+   LPA +  N  +L+ 
Sbjct: 536 SHLHILNLESNGFDEIP-VEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 96.6 bits (241), Expect = 4e-22
 Identities = 62/294 (21%), Positives = 107/294 (36%), Gaps = 28/294 (9%)

Query: 5   TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTS----LSSLPKLRILNLGMNR 59
            ++ LS N++KE  PG    +  L  L L N Q+    T       +   +R L+L  ++
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233

Query: 60  LSSLPRG-FGAFPV--LEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEI 115
           LS+     F       L +LDL+YNNLN      +F  L  L   +L  N+ + L    +
Sbjct: 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG-NDSFAWLPQLEYFFLEYNNIQHLFSHSL 292

Query: 116 GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEE 175
             L N++ +           +   +  I   +    L  L         + G+   +   
Sbjct: 293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTG 351

Query: 176 LRE----DARNSKIKFTSIFPFMVDTGLCKNP----KIKMNRLSSLPRG-FGAFPVLEAF 226
           L         NS     ++        L  +P     +  N++S +    F     LE  
Sbjct: 352 LINLKYLSLSNSFTSLRTL-TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE-- 408

Query: 227 SFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQI 279
               +LDL  N + ++     +  LE +  +YL  N +  L       + +LQ 
Sbjct: 409 ----VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 458

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 94.7 bits (236), Expect = 2e-21
 Identities = 61/310 (19%), Positives = 105/310 (33%), Gaps = 57/310 (18%)

Query: 4   ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT---SLSSLPKLRILNLGMNR 59
           +  + LSHN L     G    L NL+ L L NN+I+ L +    + +   L+ L L  N+
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182

Query: 60  LSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM---LETLRALYLGDNDFEVLPAEI 115
           +     G F A   L  L L    L   SL     +     ++R L L ++         
Sbjct: 183 IKEFSPGCFHAIGRLFGLFLNNVQLGP-SLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

Query: 116 -GNLK--NLQII------LETFLPDMMEKNRG---------HIVGISSMAGIVGLPNLVP 157
              LK  NL ++      L     D                +I  + S + + GL N+  
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS-LHGLFNVR- 299

Query: 158 YCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPK---IKMNRLSSLP 214
                     L  +  ++    A   KI   S           K  +   ++ N +  + 
Sbjct: 300 -------YLNLKRSFTKQSISLASLPKIDDFSFQW-------LKCLEHLNMEDNDIPGIK 345

Query: 215 RG-FGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFM---LETLRALYLGDNDFEVLPAE 270
              F     L+       L L+ +  + ++L    F+      L  L L  N    + ++
Sbjct: 346 SNMFTGLINLK------YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399

Query: 271 -IGNLKNLQI 279
               L +L++
Sbjct: 400 AFSWLGHLEV 409

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 94.3 bits (235), Expect = 2e-21
 Identities = 65/296 (21%), Positives = 96/296 (32%), Gaps = 57/296 (19%)

Query: 4   ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLG----- 56
           +T + LS+N L  +     A L  LE   L  N I+ L   SL  L  +R LNL      
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309

Query: 57  ----MNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL 111
               +  L  +    F     LE L++  N++        F  L  L+ L L ++   + 
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLR 368

Query: 112 PAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEA 171
                   +L       L   + KN+  I  I S A    L +L                
Sbjct: 369 TLTNETFVSLAHSPLHIL--NLTKNK--ISKIESDA-FSWLGHL---------------- 407

Query: 172 LAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRG-FGAFPVLEA 225
             E L        +    I   +          I       N+   L R  F   P L+ 
Sbjct: 408 --EVLD-------LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ- 457

Query: 226 FSFTTILDLTYNNLNE-QSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQI 279
                 L L    L    S P  F  L  L  L L +N+   +  + +  L+ L+I
Sbjct: 458 -----RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI 508

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 93.5 bits (233), Expect = 4e-21
 Identities = 54/274 (19%), Positives = 96/274 (35%), Gaps = 56/274 (20%)

Query: 9   LSHNKLKEIPPG-LANLVNLEILTLFNNQIETL--PTSLSSLPKLRILNLGMNRLSSLPR 65
           L+ NK+ +I     + L +LE+L L  N+I           L  +  + L  N+   L R
Sbjct: 388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR 447

Query: 66  G-FGAFPVLEVLDLTYNNLNE-QSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQ 122
             F   P L+ L L    L    S P  F  L  L  L L +N+   +  + +  L+ L+
Sbjct: 448 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLE 507

Query: 123 IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRE-DAR 181
           I+        ++ N  ++  +   A   G    +   +               L   +  
Sbjct: 508 ILD-------LQHN--NLARLWKHANPGGPIYFLKGLSH--------------LHILNLE 544

Query: 182 NSKIKF--TSIFPFMVDTGLCKNPKIKM-----NRLSSLPRG-FGAFPVLEAFSFTTILD 233
           ++        +F  +         ++K+     N L++LP   F     L+       L+
Sbjct: 545 SNGFDEIPVEVFKDL--------FELKIIDLGLNNLNTLPASVFNNQVSLK------SLN 590

Query: 234 LTYNNLNEQSLPGNFF--MLETLRALYLGDNDFE 265
           L  N +   S+    F      L  L +  N F+
Sbjct: 591 LQKNLI--TSVEKKVFGPAFRNLTELDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 92.4 bits (230), Expect = 1e-20
 Identities = 62/299 (20%), Positives = 104/299 (34%), Gaps = 64/299 (21%)

Query: 4   ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLS 61
            T+ ++S   L +I       L  LE L + +N I  + +   + L  L+ L+L  +  S
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366

Query: 62  SLPRGFGAF-----PVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF--EVLPAE 114
                   F       L +L+LT N +++      F  L  L  L LG N+   E+   E
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIE-SDAFSWLGHLEVLDLGLNEIGQELTGQE 425

Query: 115 IGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAE 174
              L+N+  I        +  N+   + ++  +    +P+L                  +
Sbjct: 426 WRGLENIFEIY-------LSYNK--YLQLTRNS-FALVPSL------------------Q 457

Query: 175 ELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRG-FGAFPVLEAFSF 228
            L    R   +K     P            + +     N ++++          LE    
Sbjct: 458 RL--MLRRVALKNVDSSPS----PFQPLRNLTILDLSNNNIANINDDMLEGLEKLE---- 507

Query: 229 TTILDLTYNNL-------NEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQI 279
             ILDL +NNL       N          L  L  L L  N F+ +P E   +L  L+I
Sbjct: 508 --ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 77.3 bits (191), Expect = 9e-16
 Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 16/139 (11%)

Query: 1   MLYITRITLSHNKLKEIPPG-LANL--VNLEILTLFNNQIETL-PTSLSSLPKLRILNLG 56
              I  ++LS+++L          L   NL +L L  N +  +   S + LP+L    L 
Sbjct: 221 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 280

Query: 57  MNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGN---------FFMLETLRALYLGDN 106
            N +  L          +  L+L   +  +QS+            F  L+ L  L + DN
Sbjct: 281 YNNIQHLFSHSLHGLFNVRYLNL-KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339

Query: 107 DFEVLPAEI-GNLKNLQII 124
           D   + + +   L NL+ +
Sbjct: 340 DIPGIKSNMFTGLINLKYL 358

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 43/239 (17%), Positives = 72/239 (30%), Gaps = 54/239 (22%)

Query: 50  LRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE 109
             + +    +L+ +P        + VL+LT+N L       NF     L +L +G N   
Sbjct: 6   HEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLP-AANFTRYSQLTSLDVGFNTIS 62

Query: 110 VLPAE-IGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGL 168
            L  E    L  L+++        ++ N   +  +S         NL             
Sbjct: 63  KLEPELCQKLPMLKVL-------NLQHNE--LSQLSDKT-FAFCTNL------------- 99

Query: 169 MEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIK-----MNRLSSLPRG-FGAFPV 222
                 EL     ++ I    I          K   +       N LSS   G       
Sbjct: 100 -----TEL--HLMSNSI--QKIKNNP----FVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146

Query: 223 LEAFSFTTILDLTYNNLNE-QSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQI 279
           L+       L L+ N +   +S   + F   +L+ L L  N  +         +  L  
Sbjct: 147 LQ------ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 18/75 (24%), Positives = 24/75 (32%), Gaps = 9/75 (12%)

Query: 208 NRLSSLPRG-FGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEV 266
           N LS L    F     L        L L  N++ +      F   + L  L L  N    
Sbjct: 83  NELSQLSDKTFAFCTNLT------ELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSS 135

Query: 267 LPAE-IGNLKNLQIM 280
                   L+NLQ +
Sbjct: 136 TKLGTQVQLENLQEL 150

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  107 bits (270), Expect = 3e-26
 Identities = 53/281 (18%), Positives = 100/281 (35%), Gaps = 69/281 (24%)

Query: 4   ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLS 61
              + L  N++K +     A+  +LE L L  N +  + P + ++L  LR L L  NRL 
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93

Query: 62  SLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEI-GNL 118
            +P G F     L  LD++ N +    L    F  L  L++L +GDND   +       L
Sbjct: 94  LIPLGVFTGLSNLTKLDISENKI--VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151

Query: 119 KNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRE 178
            +L+ +        +EK    +  I + A +  L  L                    LR 
Sbjct: 152 NSLEQL-------TLEKCN--LTSIPTEA-LSHLHGL------------------IVLR- 182

Query: 179 DARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNN 238
                                     ++   ++++     +F  L       +L++++  
Sbjct: 183 --------------------------LRHLNINAIRD--YSFKRLYR---LKVLEISHWP 211

Query: 239 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQ 278
               ++  N      L +L +   +   +P   + +L  L+
Sbjct: 212 YL-DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  104 bits (261), Expect = 5e-25
 Identities = 45/262 (17%), Positives = 88/262 (33%), Gaps = 70/262 (26%)

Query: 9   LSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPRG 66
           +  N L  I     + L +LE LTL    + ++PT +LS L  L +L L    ++++   
Sbjct: 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY 194

Query: 67  -FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQII 124
            F     L+VL++++      ++  N      L +L +   +   +P   + +L  L+ +
Sbjct: 195 SFKRLYRLKVLEISHWPYL-DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFL 253

Query: 125 LETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSK 184
                   +  N   I  I     +  L  L                  +E++       
Sbjct: 254 N-------LSYNP--ISTIEGSM-LHELLRL------------------QEIQ------- 278

Query: 185 IKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILDLTYNNLNEQS 243
                               +   +L+ +    F     L       +L+++ N L   +
Sbjct: 279 --------------------LVGGQLAVVEPYAFRGLNYLR------VLNVSGNQL--TT 310

Query: 244 LPGNFF-MLETLRALYLGDNDF 264
           L  + F  +  L  L L  N  
Sbjct: 311 LEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  101 bits (254), Expect = 4e-24
 Identities = 53/304 (17%), Positives = 92/304 (30%), Gaps = 69/304 (22%)

Query: 5   TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSS 62
             + L+ N +  + PG   NL NL  L L +N+++ +P    + L  L  L++  N++  
Sbjct: 59  EELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI 118

Query: 63  LPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEI-GNLK 119
           L    F     L+ L++  N+L    +    F  L +L  L L   +   +P E   +L 
Sbjct: 119 LLDYMFQDLYNLKSLEVGDNDL--VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH 176

Query: 120 NLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRED 179
            L ++        +      I  I   +    L  L                  + L   
Sbjct: 177 GLIVL-------RLRHLN--INAIRDYS-FKRLYRL------------------KVLE-- 206

Query: 180 ARNSKIKFTSIFPFMVDTGLCKNPKIK-----MNRLSSLPRG-FGAFPVL---------- 223
              S   +                 +         L+++P         L          
Sbjct: 207 --ISHWPYLDTMT----PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260

Query: 224 ---EAFSFT-----TILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNL 274
              E            + L    L     P  F  L  LR L +  N    L   +  ++
Sbjct: 261 STIEGSMLHELLRLQEIQLVGGQLAVVE-PYAFRGLNYLRVLNVSGNQLTTLEESVFHSV 319

Query: 275 KNLQ 278
            NL+
Sbjct: 320 GNLE 323

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 87.9 bits (218), Expect = 2e-19
 Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 6/111 (5%)

Query: 2   LYITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNR 59
           L +T ++++H  L  +P   + +LV L  L L  N I T+    L  L +L+ + L   +
Sbjct: 224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283

Query: 60  LSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDF 108
           L+ +    F     L VL+++ N L   +L  + F  +  L  L L  N  
Sbjct: 284 LAVVEPYAFRGLNYLRVLNVSGNQL--TTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 83.2 bits (206), Expect = 9e-18
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 5/124 (4%)

Query: 5   TRITLSHNK-LKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSS 62
             + +SH   L  + P     +NL  L++ +  +  +P  ++  L  LR LNL  N +S+
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST 262

Query: 63  LPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKN 120
           +          L+ + L    L     P  F  L  LR L +  N    L   +  ++ N
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLAVVE-PYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321

Query: 121 LQII 124
           L+ +
Sbjct: 322 LETL 325

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 75.9 bits (187), Expect = 2e-15
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)

Query: 1   MLYITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMN 58
           ++Y+  + LS+N +  I    L  L+ L+ + L   Q+  +   +   L  LR+LN+  N
Sbjct: 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306

Query: 59  RLSSLPRG-FGAFPVLEVLDLTYNNLN 84
           +L++L    F +   LE L L  N L 
Sbjct: 307 QLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 69.7 bits (171), Expect = 3e-13
 Identities = 53/250 (21%), Positives = 82/250 (32%), Gaps = 71/250 (28%)

Query: 34  NNQIETLPTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNF 92
             +   +P  +    + R+L+LG NR+ +L +  F +FP LE L+L  N ++    PG F
Sbjct: 20  RKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE-PGAF 76

Query: 93  FMLETLRALYLGDNDFEVLPAEI-GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVG 151
             L  LR L L  N  +++P  +   L NL  +        + +N+  IV +        
Sbjct: 77  NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD-------ISENK--IVILLDYM-FQD 126

Query: 152 LPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLS 211
           L NL                  + L                            +  N L 
Sbjct: 127 LYNL------------------KSLE---------------------------VGDNDLV 141

Query: 212 SLPRG-FGAFPVLEAFSFTTILDLTYNNLNEQSLPGN-FFMLETLRALYLGDNDFEVLPA 269
            +    F     LE       L L   NL   S+P      L  L  L L   +   +  
Sbjct: 142 YISHRAFSGLNSLE------QLTLEKCNL--TSIPTEALSHLHGLIVLRLRHLNINAIRD 193

Query: 270 EI-GNLKNLQ 278
                L  L+
Sbjct: 194 YSFKRLYRLK 203

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  106 bits (267), Expect = 3e-26
 Identities = 64/282 (22%), Positives = 120/282 (42%), Gaps = 35/282 (12%)

Query: 4   ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLS 61
              +T  ++ ++++P   L +   +E+L L + QIE + T + +    ++ L +G N + 
Sbjct: 47  QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 106

Query: 62  SLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEI-GNL 118
            LP   F   P+L VL L  N+L   SLP   F     L  L + +N+ E +  +     
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 164

Query: 119 KNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRE 178
            +LQ +        +  NR   V +S +  +    N+     S  A+   +E L      
Sbjct: 165 TSLQNL-------QLSSNRLTHVDLSLIPSLFHA-NVSYNLLSTLAIPIAVEEL------ 210

Query: 179 DARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNN 238
           DA ++ I   ++    V+  L    K++ N L+        +P L        +DL+YN 
Sbjct: 211 DASHNSI---NVVRGPVNVEL-TILKLQHNNLTDTA-WLLNYPGLV------EVDLSYNE 259

Query: 239 LNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEIGNLKNLQI 279
           L  + +  + F+ ++ L  LY+ +N    L      +  L++
Sbjct: 260 L--EKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKV 299

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  103 bits (259), Expect = 5e-25
 Identities = 61/278 (21%), Positives = 103/278 (37%), Gaps = 54/278 (19%)

Query: 5   TRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSS 62
           T + L  N L  +P G+  N   L  L++ NN +E +   +  +   L+ L L  NRL+ 
Sbjct: 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179

Query: 63  LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 122
           +       P L   +++YN L   +L         +  L    N   V+   +     L 
Sbjct: 180 VD--LSLIPSLFHANVSYNLL--STLAIPIA----VEELDASHNSINVVRGPV--NVELT 229

Query: 123 IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARN 182
           I+        ++ N      ++  A ++  P L                   E+  D   
Sbjct: 230 ILK-------LQHNN-----LTDTAWLLNYPGL------------------VEV--DLSY 257

Query: 183 SKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQ 242
           ++++     PF+    L +   I  NRL +L       P L+      +LDL++N+L   
Sbjct: 258 NELEKIMYHPFVKMQRL-ERLYISNNRLVALNLYGQPIPTLK------VLDLSHNHL--L 308

Query: 243 SLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQI 279
            +  N    + L  LYL  N    L       LKNL +
Sbjct: 309 HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTL 346

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 94.7 bits (236), Expect = 6e-22
 Identities = 50/278 (17%), Positives = 95/278 (34%), Gaps = 36/278 (12%)

Query: 7   ITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTS-LSSLPKLRILNLGMNRLSSLPR 65
           I +    +      +  L N +I+T  N+ +  LP + L S  ++ +LNL   ++  +  
Sbjct: 28  IDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT 86

Query: 66  G-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEI-GNLKNLQ 122
             F     ++ L + +N +  + LP + F  +  L  L L  ND   LP  I  N   L 
Sbjct: 87  YAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 144

Query: 123 IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRE-DAR 181
            +        M  N   +  I          +L     S   +  +  +L   L   +  
Sbjct: 145 TLS-------MSNNN--LERIEDDTF-QATTSLQNLQLSSNRLTHVDLSLIPSLFHANVS 194

Query: 182 NSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNE 241
            + +   +I   + +     N       ++ +                TIL L +NNL +
Sbjct: 195 YNLLSTLAIPIAVEELDASHN------SINVVRGP--------VNVELTILKLQHNNLTD 240

Query: 242 QSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQ 278
                       L  + L  N+ E +       ++ L+
Sbjct: 241 ---TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 275

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 90.5 bits (225), Expect = 2e-20
 Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 5/106 (4%)

Query: 5   TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
             + LS+N+L++I       +  LE L + NN++  L      +P L++L+L  N L  +
Sbjct: 251 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV 310

Query: 64  PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE 109
            R    F  LE L L +N++   +L  +     TL+ L L  ND++
Sbjct: 311 ERNQPQFDRLENLYLDHNSI--VTLKLSTH--HTLKNLTLSHNDWD 352

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  106 bits (266), Expect = 1e-25
 Identities = 60/300 (20%), Positives = 94/300 (31%), Gaps = 30/300 (10%)

Query: 4   ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETL--PTSLSSLPKLRILNLGMNRL 60
           +  + LS N + E+     + L +L+ L +       +    +   L  L IL L  N+ 
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 61  SSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEI--G 116
             L  G F     LEVL LT  NL+   L GNFF  L +L  L L DN+ + +       
Sbjct: 92  LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151

Query: 117 NLKNLQI--------------ILETFLPDMMEKNRGHIVGISSM--AGIVGLPNLVPYCA 160
           N++   +               L  F        R   + +  M    +       P+  
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211

Query: 161 SKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAF 220
           +      L     +E         I  T I   ++                        F
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN--FTF 269

Query: 221 PVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQ 278
             LEA       DL+ + +   +L    F     L  L L  N+   +       L +L 
Sbjct: 270 KGLEASG-VKTCDLSKSKI--FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 90.6 bits (225), Expect = 2e-20
 Identities = 56/294 (19%), Positives = 100/294 (34%), Gaps = 45/294 (15%)

Query: 5   TRITLSHNKLKE--IPPGL-ANLVNLEILTLFNNQIETLP--TSLSSLPKLRILNLGMNR 59
             +TL+   L    +       L +LE+L L +N I+ +   +   ++ +  +L+L  N+
Sbjct: 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165

Query: 60  LSSLPRG-FGAFPVLEVLDLTYNNLNEQSLP---------GNFFMLETLRALYLGDNDFE 109
           + S+       F       L  +++  Q +          GN F   ++  L L  N F+
Sbjct: 166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK 225

Query: 110 VLPAE-IGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGL 168
              A+   +      I    L +                      +        F  +GL
Sbjct: 226 ESMAKRFFDAIAGTKIQSLILSNSYNM-------------GSSFGHTNFKDPDNFTFKGL 272

Query: 169 MEALAEELREDARNSKIKFTSIFP--FMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAF 226
             +  +    D   SKI   ++    F   T L +   +  N ++ +     AF  L   
Sbjct: 273 EASGVKTC--DLSKSKI--FALLKSVFSHFTDL-EQLTLAQNEINKIDDN--AFWGLTHL 325

Query: 227 SFTTILDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDFEVLPAEI-GNLKNLQ 278
                L+L+ N L   S+    F  L+ L  L L  N    L  +    L NL+
Sbjct: 326 ---LKLNLSQNFL--GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 86.7 bits (215), Expect = 5e-19
 Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 6/108 (5%)

Query: 5   TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSS 62
            ++TL+ N++ +I       L +L  L L  N + ++ +    +L KL +L+L  N + +
Sbjct: 302 EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA 361

Query: 63  LPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDF 108
           L    F   P L+ L L  N L  +S+P   F  L +L+ ++L  N +
Sbjct: 362 LGDQSFLGLPNLKELALDTNQL--KSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 74.4 bits (183), Expect = 6e-15
 Identities = 28/127 (22%), Positives = 44/127 (34%), Gaps = 9/127 (7%)

Query: 3   YITRITLSHNKLKEIPPGL---ANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMN 58
           Y    +  H   K+             ++   L  ++I  L  +  S    L  L L  N
Sbjct: 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN 309

Query: 59  RLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDFEVLPAEI- 115
            ++ +    F     L  L+L+ N L   S+    F  L+ L  L L  N    L  +  
Sbjct: 310 EINKIDDNAFWGLTHLLKLNLSQNFL--GSIDSRMFENLDKLEVLDLSYNHIRALGDQSF 367

Query: 116 GNLKNLQ 122
             L NL+
Sbjct: 368 LGLPNLK 374

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 70.9 bits (174), Expect = 8e-14
 Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 5   TRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSS 62
            ++ LS N L  I   +  NL  LE+L L  N I  L   S   LP L+ L L  N+L S
Sbjct: 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS 385

Query: 63  LPRG-FGAFPVLEVLDLTYNNLN 84
           +P G F     L+ + L  N  +
Sbjct: 386 VPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 68.2 bits (167), Expect = 8e-13
 Identities = 50/305 (16%), Positives = 87/305 (28%), Gaps = 54/305 (17%)

Query: 10  SHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLS-SLPRG- 66
            +  L ++P   A++  ++   L  N I  L  TS S L  L+ L +        +    
Sbjct: 18  INRGLHQVPELPAHVNYVD---LSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNT 74

Query: 67  FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFE--VLPAEI-GNLKNLQ 122
           F     L +L L YN      L    F  L  L  L L   + +  VL       L +L+
Sbjct: 75  FRGLSSLIILKLDYNQF--LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132

Query: 123 II------LETFLPDMMEKNRGHIVGIS-SMAGIVGLPNLVPYCASKFAVRGLMEALAEE 175
           ++      ++   P     N      +  +   +  +               L       
Sbjct: 133 MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL------- 185

Query: 176 LREDARNSKIKFTSIFPFMVDTGLCKNPK---------IKMNRLSSLPRGFGAFPVLEAF 226
                R S I    +  + +    C NP          +  N           F    A 
Sbjct: 186 -----RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA--KRFFDAIAG 238

Query: 227 SFTTILDLTYNNLNEQSLPGN---------FFMLET--LRALYLGDNDFEVLPAEI-GNL 274
           +    L L+ +     S             F  LE   ++   L  +    L   +  + 
Sbjct: 239 TKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF 298

Query: 275 KNLQI 279
            +L+ 
Sbjct: 299 TDLEQ 303

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 53.6 bits (129), Expect = 4e-08
 Identities = 47/295 (15%), Positives = 93/295 (31%), Gaps = 77/295 (26%)

Query: 4   ITRITLSHNKLKEIPPG-LANLV--NLEILTLFNNQIETLPT---------SLSSLPKLR 51
              + L+ NK+K I    L N    +  +L L +  ++ +           +      + 
Sbjct: 156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSIT 215

Query: 52  ILNLGMNRLSSLPRG--FGAFPVLEVLDLTYNNL----------NEQSLPGNFFM---LE 96
            L+L  N          F A    ++  L  +N           N +      F      
Sbjct: 216 TLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEAS 275

Query: 97  TLRALYLGDNDFEVLPAEI-GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIV--GLP 153
            ++   L  +    L   +  +  +L+ +        + +N      I+ +      GL 
Sbjct: 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLT-------LAQNE-----INKIDDNAFWGLT 323

Query: 154 NLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMN--RLS 211
           +L                   +L  +   + +   SI   M +  L K   + ++   + 
Sbjct: 324 HL------------------LKL--NLSQNFL--GSIDSRMFE-NLDKLEVLDLSYNHIR 360

Query: 212 SLPRG-FGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDF 264
           +L    F   P L        L L  N L  +S+P   F  L +L+ ++L  N +
Sbjct: 361 ALGDQSFLGLPNL------KELALDTNQL--KSVPDGIFDRLTSLQKIWLHTNPW 407

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  106 bits (266), Expect = 2e-25
 Identities = 64/282 (22%), Positives = 120/282 (42%), Gaps = 35/282 (12%)

Query: 4   ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLS 61
              +T  ++ ++++P   L +   +E+L L + QIE + T + +    ++ L +G N + 
Sbjct: 53  QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 112

Query: 62  SLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEI-GNL 118
            LP   F   P+L VL L  N+L   SLP   F     L  L + +N+ E +  +     
Sbjct: 113 YLPPHVFQNVPLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 170

Query: 119 KNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRE 178
            +LQ +        +  NR   V +S +  +    N+     S  A+   +E L      
Sbjct: 171 TSLQNL-------QLSSNRLTHVDLSLIPSLFHA-NVSYNLLSTLAIPIAVEEL------ 216

Query: 179 DARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNN 238
           DA ++ I   ++    V+  L    K++ N L+        +P L        +DL+YN 
Sbjct: 217 DASHNSI---NVVRGPVNVEL-TILKLQHNNLTDTA-WLLNYPGLV------EVDLSYNE 265

Query: 239 LNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEIGNLKNLQI 279
           L  + +  + F+ ++ L  LY+ +N    L      +  L++
Sbjct: 266 L--EKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKV 305

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  103 bits (258), Expect = 2e-24
 Identities = 59/283 (20%), Positives = 103/283 (36%), Gaps = 64/283 (22%)

Query: 5   TRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSS 62
           T + L  N L  +P G+  N   L  L++ NN +E +   +  +   L+ L L  NRL+ 
Sbjct: 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185

Query: 63  LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 122
           +       P L   +++YN L   +L         +  L    N   V+   +     L 
Sbjct: 186 VD--LSLIPSLFHANVSYNLL--STLAIPIA----VEELDASHNSINVVRGPV--NVELT 235

Query: 123 IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARN 182
           I+        ++ N      ++  A ++  P L                   E+  D   
Sbjct: 236 ILK-------LQHNN-----LTDTAWLLNYPGL------------------VEV--DLSY 263

Query: 183 SKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFTTILDLTYN 237
           ++++     PF     +    +++      NRL +L       P L+      +LDL++N
Sbjct: 264 NELEKIMYHPF---VKM---QRLERLYISNNRLVALNLYGQPIPTLK------VLDLSHN 311

Query: 238 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQI 279
           +L    +  N    + L  LYL  N    L       LKNL +
Sbjct: 312 HL--LHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTL 352

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 94.2 bits (234), Expect = 2e-21
 Identities = 50/278 (17%), Positives = 95/278 (34%), Gaps = 36/278 (12%)

Query: 7   ITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTS-LSSLPKLRILNLGMNRLSSLPR 65
           I +    +      +  L N +I+T  N+ +  LP + L S  ++ +LNL   ++  +  
Sbjct: 34  IDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT 92

Query: 66  G-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEI-GNLKNLQ 122
             F     ++ L + +N +  + LP + F  +  L  L L  ND   LP  I  N   L 
Sbjct: 93  YAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 150

Query: 123 IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRE-DAR 181
            +        M  N   +  I          +L     S   +  +  +L   L   +  
Sbjct: 151 TLS-------MSNNN--LERIEDDT-FQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVS 200

Query: 182 NSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNE 241
            + +   +I   +      +      N ++ +                TIL L +NNL +
Sbjct: 201 YNLLSTLAIPIAV------EELDASHNSINVVRGP--------VNVELTILKLQHNNLTD 246

Query: 242 QSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQ 278
                       L  + L  N+ E +       ++ L+
Sbjct: 247 ---TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 281

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 90.4 bits (224), Expect = 4e-20
 Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 5/106 (4%)

Query: 5   TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
             + LS+N+L++I       +  LE L + NN++  L      +P L++L+L  N L  +
Sbjct: 257 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV 316

Query: 64  PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE 109
            R    F  LE L L +N++   +L  +     TL+ L L  ND++
Sbjct: 317 ERNQPQFDRLENLYLDHNSI--VTLKLSTH--HTLKNLTLSHNDWD 358

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  106 bits (265), Expect = 2e-25
 Identities = 63/289 (21%), Positives = 96/289 (33%), Gaps = 65/289 (22%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
           IT + +  N L  +P     L  LE   +  NQ+ +LP     L +L I +  +  L +L
Sbjct: 63  ITTLVIPDNNLTSLPALPPELRTLE---VSGNQLTSLPVLPPGLLELSIFSNPLTHLPAL 119

Query: 64  PRG----------FGAFPV----LEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE 109
           P G            + PV    L+ L ++ N L   SLP     L     L+  +N   
Sbjct: 120 PSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA--SLPALPSELCK---LWAYNNQLT 174

Query: 110 VLPAEIGNLKNL-----QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFA 164
            LP     L+ L     Q+     LP                     L  L  Y     +
Sbjct: 175 SLPMLPSGLQELSVSDNQL---ASLPT----------------LPSELYKLWAYNNRLTS 215

Query: 165 VRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLE 224
           +  L   L +EL      +++  TS+      + L K   +  NRL+SLP          
Sbjct: 216 LPALPSGL-KEL--IVSGNRL--TSLPVLP--SEL-KELMVSGNRLTSLPMLPSGL---- 263

Query: 225 AFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGN 273
                  L +  N L    LP +   L +   + L  N       +   
Sbjct: 264 -----LSLSVYRNQL--TRLPESLIHLSSETTVNLEGNPLSERTLQALR 305

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 93.4 bits (232), Expect = 4e-21
 Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 13/119 (10%)

Query: 5   TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP 64
             + +  + L  +P  L    ++  L + +N + +LP   +  P+LR L +  N+L+SLP
Sbjct: 43  AVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLP---ALPPELRTLEVSGNQLTSLP 97

Query: 65  RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
                   L +      +L   +LP        L  L++  N    LP     L+ L +
Sbjct: 98  VLPPGLLELSIFSNPLTHL--PALPSG------LCKLWIFGNQLTSLPVLPPGLQELSV 148

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 70.7 bits (173), Expect = 2e-13
 Identities = 26/121 (21%), Positives = 40/121 (33%), Gaps = 7/121 (5%)

Query: 5   TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP 64
             + +S N+L  +P   + L     L+++ NQ+  LP SL  L     +NL  N LS   
Sbjct: 244 KELMVSGNRLTSLPMLPSGL---LSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERT 300

Query: 65  RGFGAFPVLEVLD---LTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL 121
                           +   ++   S P     L    A +L     E  PA        
Sbjct: 301 LQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAR-EGEPAPADRWHMF 359

Query: 122 Q 122
            
Sbjct: 360 G 360

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 63.0 bits (153), Expect = 5e-11
 Identities = 42/208 (20%), Positives = 67/208 (32%), Gaps = 42/208 (20%)

Query: 73  LEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDM 132
             VL++  + L   +LP        +  L + DN+   LPA    L+ L++         
Sbjct: 42  NAVLNVGESGL--TTLPDCLP--AHITTLVIPDNNLTSLPALPPELRTLEV--------- 88

Query: 133 MEKNRGHIVGISSM-AGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIF 191
              N+     ++S+     GL  L  +      +  L   L  +L         + TS+ 
Sbjct: 89  -SGNQ-----LTSLPVLPPGLLELSIFSNPLTHLPALPSGL-CKLW----IFGNQLTSLP 137

Query: 192 PFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFML 251
                    +   +  N+L+SLP                 L    N L   SLP      
Sbjct: 138 VLP---PGLQELSVSDNQLASLPALPSEL---------CKLWAYNNQL--TSLPML---P 180

Query: 252 ETLRALYLGDNDFEVLPAEIGNLKNLQI 279
             L+ L + DN    LP     L  L  
Sbjct: 181 SGLQELSVSDNQLASLPTLPSELYKLWA 208

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 59.9 bits (145), Expect = 5e-10
 Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 9/92 (9%)

Query: 34  NNQIETLPTSLSS--LPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGN 91
           +     +   + +       +LN+G + L++LP    A   +  L +  NNL   SLP  
Sbjct: 24  SRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAH--ITTLVIPDNNLT--SLPAL 79

Query: 92  FFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
                 LR L +  N    LP     L  L I
Sbjct: 80  ---PPELRTLEVSGNQLTSLPVLPPGLLELSI 108

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.7 bits (103), Expect = 6e-05
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 14/71 (19%)

Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL 267
           NRL+SLP                 L ++ N L   SLP        L +L +  N    L
Sbjct: 231 NRLTSLPVLPSEL---------KELMVSGNRL--TSLPML---PSGLLSLSVYRNQLTRL 276

Query: 268 PAEIGNLKNLQ 278
           P  + +L +  
Sbjct: 277 PESLIHLSSET 287

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  104 bits (261), Expect = 5e-25
 Identities = 43/277 (15%), Positives = 92/277 (33%), Gaps = 52/277 (18%)

Query: 5   TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSS 62
               ++ + LK+       +  N++ L L  N +  +    L+   KL +LNL  N L  
Sbjct: 13  KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE 72

Query: 63  LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIG-NLKNL 121
                 +   L  LDL  N + E        +  ++  L+  +N+   +    G   KN+
Sbjct: 73  TL-DLESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNISRVSCSRGQGKKNI 125

Query: 122 QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDAR 181
                      +  N+  I  +  +        +                  + L  D +
Sbjct: 126 Y----------LANNK--ITMLRDLD-EGCRSRV------------------QYL--DLK 152

Query: 182 NSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNE 241
            ++I   +       +   ++  ++ N +  +      F  L+       LDL+ N L  
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLK------TLDLSSNKL-- 203

Query: 242 QSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 278
             +   F     +  + L +N   ++   +   +NL+
Sbjct: 204 AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLE 240

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 93.4 bits (232), Expect = 3e-21
 Identities = 39/289 (13%), Positives = 88/289 (30%), Gaps = 27/289 (9%)

Query: 4   ITRITLSHNKLKEIPPG--LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLS 61
           +  + L  N++  +      A+   LE L L  N I  +        KL+ L+L  N+L+
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK-GQVVFAKLKTLDLSSNKLA 204

Query: 62  SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL 121
            +   F +   +  + L  N L    +       + L    L  N F          KN 
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKL--VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262

Query: 122 QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDAR 181
           +  ++T     ++K  G      ++  +                  L+    +       
Sbjct: 263 R--VQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRK------E 314

Query: 182 NSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFTTILDLTY 236
           ++ +         ++       + +       +  ++          +A      L+   
Sbjct: 315 HALLSGQGSETERLECERENQARQREIDALKEQYRTVID--QVTLRKQA---KITLEQKK 369

Query: 237 NNLNEQSLPGNFFMLETLRALY---LGDNDFEVLPAEIGNLKNLQIMLE 282
             L+EQ +         L       +G  + +    E   L+ L+ +++
Sbjct: 370 KALDEQ-VSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVK 417

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 87.2 bits (216), Expect = 4e-19
 Identities = 52/312 (16%), Positives = 90/312 (28%), Gaps = 50/312 (16%)

Query: 9   LSHNKLKEIPPGLANLVNLEILTLFNNQIETLPT-----------------SLSSLPKLR 51
           LS N L E    L +L  L  L L NN ++ L                   S S     +
Sbjct: 65  LSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKK 123

Query: 52  ILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEV 110
            + L  N+++ L     G    ++ LDL  N ++  +        +TL  L L  N    
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183

Query: 111 LPAEIGNLKNLQII-LE----TFLPDMMEKNRG---------HIVGISSMAGIVGLPNLV 156
           +  ++     L+ + L      F+    +   G          +V I     +    NL 
Sbjct: 184 VKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK--ALRFSQNL- 239

Query: 157 PYCASKFAVRG-------LMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNR 209
                 F +RG       L +  ++  R      +           +  +          
Sbjct: 240 ----EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYC 295

Query: 210 LSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA 269
              LP  F     L A        L+      + L          R +      +  +  
Sbjct: 296 CEDLPAPF--ADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVID 353

Query: 270 EIGNLKNLQIML 281
           ++   K  +I L
Sbjct: 354 QVTLRKQAKITL 365

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 70.6 bits (173), Expect = 1e-13
 Identities = 38/241 (15%), Positives = 74/241 (30%), Gaps = 50/241 (20%)

Query: 40  LPTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETL 98
           +     +  + +I  +  + L         +   ++ LDL+ N L  Q    +      L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL-SQISAADLAPFTKL 60

Query: 99  RALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPY 158
             L L  N       ++ +L  L+ +        +  N      +     ++  P++   
Sbjct: 61  ELLNLSSNVLYETL-DLESLSTLRTL-------DLNNNY-----VQE---LLVGPSI--- 101

Query: 159 CASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-F 217
                          E L   A N+ I   S        G  KN  +  N+++ L     
Sbjct: 102 ---------------ETL--HAANNNISRVSCSRG---QGK-KNIYLANNKITMLRDLDE 140

Query: 218 GAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL 277
           G    +        LDL  N ++  +        +TL  L L  N    +  ++     L
Sbjct: 141 GCRSRV------QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKL 193

Query: 278 Q 278
           +
Sbjct: 194 K 194

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 53.7 bits (129), Expect = 4e-08
 Identities = 17/138 (12%), Positives = 44/138 (31%), Gaps = 11/138 (7%)

Query: 9   LSHNKLKEIPPGLA------NLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSS 62
                 +++P   A            +L+   ++ E L     +  + R ++    +  +
Sbjct: 291 YGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRT 350

Query: 63  LPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALY---LGDNDFEVLPAEIGNL 118
           +             L+     L+EQ +         L       +G  + +    E   L
Sbjct: 351 VIDQVTLRKQAKITLEQKKKALDEQ-VSNGRRAHAELDGTLQQAVGQIELQHATEEQSPL 409

Query: 119 KNLQIILETFLPDMMEKN 136
           + L+ I++ +    +E+ 
Sbjct: 410 QLLRAIVKRYEEMYVEQQ 427

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 23/210 (10%), Positives = 52/210 (24%), Gaps = 76/210 (36%)

Query: 73  LEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAE-IGNLKNLQIILETFLP 130
            ++  +T ++L  +    +       ++ L L  N    + A  +     L+++      
Sbjct: 12  YKIEKVTDSSL--KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL------ 63

Query: 131 DMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSI 190
             +  N      +     +  L  L                    L              
Sbjct: 64  -NLSSNV-----LYETLDLESLSTL------------------RTLD------------- 86

Query: 191 FPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFM 250
                         +  N +  L  G               L    NN++   +  +   
Sbjct: 87  --------------LNNNYVQELLVG----------PSIETLHAANNNIS--RVSCSRGQ 120

Query: 251 LETLRALYLGDNDFEVLPA-EIGNLKNLQI 279
               + +YL +N   +L   + G    +Q 
Sbjct: 121 G--KKNIYLANNKITMLRDLDEGCRSRVQY 148

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  100 bits (252), Expect = 1e-24
 Identities = 58/270 (21%), Positives = 89/270 (32%), Gaps = 48/270 (17%)

Query: 4   ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETL---PTSLSSLPKLRILNLGMNR 59
            TR+ L  NKL+ +P G    L  L  L+L +N +        S      L+ L+L  N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 60  LSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNL 118
           + ++   F     LE LD  ++NL + S    F  L  L  L +      V    I   L
Sbjct: 90  VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149

Query: 119 KNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRE 178
            +L+++        M  N               L NL                    L  
Sbjct: 150 SSLEVL-------KMAGNS-FQENFLPDI-FTELRNL------------------TFL-- 180

Query: 179 DARNSKIKFTSIFPFMVDTGLCKNPKIKM--NRLSSLPRGFGAFPVLEAFSFTTILDLTY 236
           D    +++  S   F     L     + M  N   SL      +  L +     +LD + 
Sbjct: 181 DLSQCQLEQLSPTAF---NSLSSLQVLNMSHNNFFSLDT--FPYKCLNSL---QVLDYSL 232

Query: 237 NNLNEQSLPGNFF--MLETLRALYLGDNDF 264
           N++   +           +L  L L  NDF
Sbjct: 233 NHI--MTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 80.1 bits (198), Expect = 3e-17
 Identities = 48/249 (19%), Positives = 76/249 (30%), Gaps = 66/249 (26%)

Query: 34  NNQIETLPTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSL-PGN 91
           +  + ++PT +        L L  N+L SLP G F     L  L L+ N L+ +     +
Sbjct: 16  SKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS 73

Query: 92  FFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVG 151
            F   +L+ L L  N    + +    L+ L+ +         + +   +  +S  +  + 
Sbjct: 74  DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL-------DFQHSN--LKQMSEFSVFLS 124

Query: 152 LPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLS 211
           L NL                    L                            I      
Sbjct: 125 LRNL------------------IYLD---------------------------ISHTHTR 139

Query: 212 SLPRG-FGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 270
               G F     LE      +L +  N+  E  LP  F  L  L  L L     E L   
Sbjct: 140 VAFNGIFNGLSSLE------VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 193

Query: 271 I-GNLKNLQ 278
              +L +LQ
Sbjct: 194 AFNSLSSLQ 202

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 7/73 (9%)

Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL 267
           N + ++   F     LE       LD  ++NL + S    F  L  L  L +      V 
Sbjct: 88  NGVITMSSNFLGLEQLE------HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 141

Query: 268 PAEI-GNLKNLQI 279
              I   L +L++
Sbjct: 142 FNGIFNGLSSLEV 154

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  103 bits (258), Expect = 2e-24
 Identities = 59/300 (19%), Positives = 101/300 (33%), Gaps = 33/300 (11%)

Query: 4   ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETL--PTSLSSLPKLRILNLGMNRL 60
             R+ LS N ++ +       L  L++L L +          +  +LP LRIL+LG +++
Sbjct: 26  TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85

Query: 61  SSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAE--IG 116
             L    F     L  L L +  L++  L   +F  L+ L  L L  N    L      G
Sbjct: 86  YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145

Query: 117 NLKNLQIIL-----------ETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
            L +L+ I                P   +        +++ +    +      C + F  
Sbjct: 146 KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS--FFSLAANSLYSRVSVDWGKCMNPFRN 203

Query: 166 RGLME-----ALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAF 220
             L                  ++ I  +  F  ++   +        + +    +    F
Sbjct: 204 MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI-MGAGFGFHNIKDPDQ--NTF 260

Query: 221 PVLEAFSFTTILDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEI-GNLKNLQ 278
             L   S    LDL++  +   SL    F  L+ L+ L L  N    +  E    L NLQ
Sbjct: 261 AGLARSSVRH-LDLSHGFV--FSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  102 bits (257), Expect = 4e-24
 Identities = 60/298 (20%), Positives = 102/298 (34%), Gaps = 50/298 (16%)

Query: 2   LYITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNR 59
             +  + LSH  +  +       L +L++L L  N+I  +   +   L  L++LNL  N 
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325

Query: 60  LSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNL 118
           L  L    F   P +  +DL  N++        F  LE L+ L L DN    +   I ++
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQ-DQTFKFLEKLQTLDLRDNALTTIHF-IPSI 383

Query: 119 KNL--------QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLME 170
            ++         +       +++  +   +  +  +  ++ +P+L               
Sbjct: 384 PDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHL--------------- 428

Query: 171 ALAEELREDARNSKIKFTSIFPFMVDTGLCKNPK------IKMNRLSSLPRGFGAFPVLE 224
              + L      ++    S                     +  N L         + V E
Sbjct: 429 ---QIL--ILNQNRFSSCS------GDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477

Query: 225 AFSFTTILDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEI--GNLKNLQI 279
             S   +L L +N L   SLP   F  L  LR L L  N   VL       NL+ L I
Sbjct: 478 GLSHLQVLYLNHNYL--NSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDI 533

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 93.3 bits (232), Expect = 5e-21
 Identities = 61/289 (21%), Positives = 108/289 (37%), Gaps = 35/289 (12%)

Query: 3   YITRITLSHNKLKEIPPG-LANLV--NLEILTLFNNQIETL-PTSLSSLPKLRILNLGMN 58
           +I       + +K+      A L   ++  L L +  + +L      +L  L++LNL  N
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN 300

Query: 59  RLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-G 116
           +++ +    F     L+VL+L+YN L E     NF+ L  +  + L  N   ++  +   
Sbjct: 301 KINKIADEAFYGLDNLQVLNLSYNLLGELY-SSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
            L+ LQ +        +  N         +  I  +P++     S   +  L +      
Sbjct: 360 FLEKLQTL-------DLRDNA--------LTTIHFIPSIPDIFLSGNKLVTLPKINLTAN 404

Query: 177 REDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG--FGAFPVLEAFSFTTILDL 234
                 ++++   I  F++     +   +  NR SS          P LE       L L
Sbjct: 405 LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLE------QLFL 458

Query: 235 TYNNL---NEQSLPGNFFM-LETLRALYLGDNDFEVLPAEI-GNLKNLQ 278
             N L    E  L  + F  L  L+ LYL  N    LP  +  +L  L+
Sbjct: 459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR 507

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 75.6 bits (186), Expect = 4e-15
 Identities = 56/297 (18%), Positives = 97/297 (32%), Gaps = 52/297 (17%)

Query: 5   TRITLSHNKLKE--IPPG-LANLVNLEILTLFNNQIETLP--TSLSSLPKLRILNLGMNR 59
             + L    L +  +  G   NL  L  L L  NQI +L    S   L  L+ ++   N+
Sbjct: 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159

Query: 60  LSSLPRGFGAFPVLEVLDLTYNNLNEQSL----------PGNFFMLETLRALYLGDNDFE 109
           +  +         L+   L++ +L   SL            N F    L  L +  N + 
Sbjct: 160 IFLVCEH--ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217

Query: 110 VLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLM 169
           V     GN  N     + F   +     G   G  ++               +    GL 
Sbjct: 218 VDIT--GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP-----------DQNTFAGLA 264

Query: 170 EALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRG-FGAFPVL 223
            +    L      S     S+   +          +K+     N+++ +    F     L
Sbjct: 265 RSSVRHLDL----SHGFVFSLNSRV----FETLKDLKVLNLAYNKINKIADEAFYGLDNL 316

Query: 224 EAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQI 279
           +      +L+L+YN L E     NF+ L  +  + L  N   ++  +    L+ LQ 
Sbjct: 317 Q------VLNLSYNLLGELY-SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 73.3 bits (180), Expect = 3e-14
 Identities = 30/139 (21%), Positives = 50/139 (35%), Gaps = 14/139 (10%)

Query: 1   MLYITRITLSHNKLKEIPPG--LANLVNLEILTLFNNQIETLPTS------LSSLPKLRI 52
           + ++  + L+ N+          +   +LE L L  N ++    +         L  L++
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484

Query: 53  LNLGMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL 111
           L L  N L+SLP G F     L  L L  N L    L  N      L  L +  N     
Sbjct: 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT--VLSHNDL-PANLEILDISRNQLLAP 541

Query: 112 PAEIGNLKNLQIILETFLP 130
             ++    +L ++  T   
Sbjct: 542 NPDV--FVSLSVLDITHNK 558

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 69.4 bits (170), Expect = 4e-13
 Identities = 54/300 (18%), Positives = 98/300 (32%), Gaps = 65/300 (21%)

Query: 4   ITRITLSHNKLKEIPPG--LANLVNLEILTLFNNQIETLP-TSLSSL--PKLRILNLGMN 58
           +TR+ LS N+++ +        L +L+ +   +NQI  +    L  L    L   +L  N
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184

Query: 59  RLSSL-PRGFGAFP------VLEVLDLTYNNLN-----------EQSLPGNFFMLETLRA 100
            L S     +G         VLE+LD++ N               +S   +  +   +  
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244

Query: 101 LYLGDNDFEVLPAEI-GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYC 159
              G ++ +         L      +     D+   + G +  ++S      L +L    
Sbjct: 245 AGFGFHNIKDPDQNTFAGLARSS--VRHL--DL---SHGFVFSLNSRV-FETLKDL---- 292

Query: 160 ASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FG 218
                         + L  +   +KI   +   F     L +   +  N L  L    F 
Sbjct: 293 --------------KVL--NLAYNKINKIADEAFYGLDNL-QVLNLSYNLLGELYSSNFY 335

Query: 219 AFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 278
             P +        +DL  N++        F  LE L+ L L DN        I  + ++ 
Sbjct: 336 GLPKVA------YIDLQKNHIAIIQ-DQTFKFLEKLQTLDLRDNALT----TIHFIPSIP 384

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 34/233 (14%), Positives = 63/233 (27%), Gaps = 36/233 (15%)

Query: 34  NNQIETLPTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNF 92
              +  +P     L     L L  N + ++    F     L++L+L             F
Sbjct: 13  FCNLTQVP---QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF 69

Query: 93  FMLETLRALYLGDNDFEVLPAEI-GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVG 151
             L  LR L LG +    L  +    L +L  +        +         +        
Sbjct: 70  RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR-------LYFCGLSDAVLKDGY-FRN 121

Query: 152 LPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLS 211
           L  L                    L  D   ++I+   + P        K+     N++ 
Sbjct: 122 LKAL------------------TRL--DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161

Query: 212 SLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF 264
            +         L+  + +    L  N+L  +        +   R + L   D 
Sbjct: 162 LVCE--HELEPLQGKTLSF-FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDV 211

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.4 bits (136), Expect = 6e-09
 Identities = 44/311 (14%), Positives = 89/311 (28%), Gaps = 81/311 (26%)

Query: 1   MLYITRITLSHNKLKEIPPG-LANL--VNLEILTLFNNQIETLP-------TSLSSLPKL 50
           +  +  I  S N++  +    L  L    L   +L  N + +          +      L
Sbjct: 147 LNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL 206

Query: 51  RILNLGMNRLSSLPRG-------------FGAFPVLEVLDLTYNNLNEQSLPGNFFM--- 94
            IL++  N  +    G                   +      ++N+  +    N F    
Sbjct: 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI--KDPDQNTFAGLA 264

Query: 95  LETLRALYLGDNDFEVLPAEI-GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLP 153
             ++R L L       L + +   LK+L+++        +  N   I  I+  A   GL 
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLN-------LAYN--KINKIADEA-FYGLD 314

Query: 154 NLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----N 208
           NL                  + L  +   + +    ++           PK+       N
Sbjct: 315 NL------------------QVL--NLSYNLL--GELYSSN----FYGLPKVAYIDLQKN 348

Query: 209 RLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP 268
            ++ +          +       LDL  N L           + ++  ++L  N    LP
Sbjct: 349 HIAIIQDQ-----TFKFLEKLQTLDLRDNALTT------IHFIPSIPDIFLSGNKLVTLP 397

Query: 269 AEIGNLKNLQI 279
                   + +
Sbjct: 398 KINLTANLIHL 408

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 14/78 (17%)

Query: 208 NRLSSLPRGFGAFPVLEAFSFT---TILDLTYNNLNEQSLPGNFFM-LETLRALYLGDND 263
           +++  L           AF        L L +  L++  L   +F  L+ L  L L  N 
Sbjct: 83  SKIYFLHPD--------AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134

Query: 264 FEVLPAE--IGNLKNLQI 279
              L      G L +L+ 
Sbjct: 135 IRSLYLHPSFGKLNSLKS 152

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  101 bits (254), Expect = 3e-24
 Identities = 61/269 (22%), Positives = 101/269 (37%), Gaps = 55/269 (20%)

Query: 4   ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLS 61
              + L  N+++ I      +L +LEIL L  N I T+   + + L  L  L L  NRL+
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125

Query: 62  SLPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGD-NDFEVLPAEI-GN 117
           ++P G F     L+ L L  N +  +S+P   F  + +LR L LG+      +       
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPI--ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183

Query: 118 LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELR 177
           L NL+ +        +         +  +  +  L  L                  +EL 
Sbjct: 184 LSNLRYL-------NLAMCN-----LREIPNLTPLIKL------------------DEL- 212

Query: 178 EDARNSKIKFTSIFPFMVDTGLCKNPKIKM--NRLSSLPRG-FGAFPVLEAFSFTTILDL 234
            D   + +       F    GL    K+ M  +++  + R  F     L        ++L
Sbjct: 213 -DLSGNHLSAIRPGSF---QGLMHLQKLWMIQSQIQVIERNAFDNLQSLV------EINL 262

Query: 235 TYNNLNEQSLPGNFF-MLETLRALYLGDN 262
            +NNL    LP + F  L  L  ++L  N
Sbjct: 263 AHNNL--TLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 97.1 bits (242), Expect = 1e-22
 Identities = 66/280 (23%), Positives = 109/280 (38%), Gaps = 49/280 (17%)

Query: 5   TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSL 63
           +++      L+E+P G+    N  +L L  NQI+ +   S   L  L IL L  N + ++
Sbjct: 46  SKVICVRKNLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI 103

Query: 64  PRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI-GNLKN 120
             G F     L  L+L  N L   ++P G F  L  L+ L+L +N  E +P+     + +
Sbjct: 104 EIGAFNGLANLNTLELFDNRL--TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161

Query: 121 LQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDA 180
           L+ +      D+ E  R  +  IS  A   GL NL                    L    
Sbjct: 162 LRRL------DLGELKR--LSYISEGA-FEGLSNL------------------RYLNLA- 193

Query: 181 RNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLN 240
                    I        L     +  N LS++    G+F  L        L +  + + 
Sbjct: 194 MC---NLREIPNLTPLIKL-DELDLSGNHLSAIRP--GSFQGLMH---LQKLWMIQSQI- 243

Query: 241 EQSLPGNFFM-LETLRALYLGDNDFEVLPAEI-GNLKNLQ 278
            Q +  N F  L++L  + L  N+  +LP ++   L +L+
Sbjct: 244 -QVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 73.2 bits (180), Expect = 2e-14
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 5   TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSS 62
             + LS N L  I PG    L++L+ L +  +QI+ +   +  +L  L  +NL  N L+ 
Sbjct: 210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL 269

Query: 63  LPRG-FGAFPVLEVLDLTYNNLN 84
           LP   F     LE + L +N  N
Sbjct: 270 LPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 44/235 (18%), Positives = 65/235 (27%), Gaps = 71/235 (30%)

Query: 48  PKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDN 106
            +   +      L  +P G        +L+L  N +  Q +  N F  L  L  L L  N
Sbjct: 43  NQFSKVICVRKNLREVPDGI--STNTRLLNLHENQI--QIIKVNSFKHLRHLEILQLSRN 98

Query: 107 DFEVLPAEI-GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
               +       L NL  +        +  NR  +  I + A  V L  L          
Sbjct: 99  HIRTIEIGAFNGLANLNTL-------ELFDNR--LTTIPNGA-FVYLSKL---------- 138

Query: 166 RGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAFPVLE 224
                   +EL                            ++ N + S+P   F   P L 
Sbjct: 139 --------KELW---------------------------LRNNPIESIPSYAFNRIPSLR 163

Query: 225 AFSFTTILDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEIGNLKNLQ 278
                  LDL         +    F  L  LR L L   +   +P  +  L  L 
Sbjct: 164 ------RLDLGELKRL-SYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLD 210

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 9/74 (12%)

Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEV 266
           N + ++  G  AF  L        L+L  N L   ++P G F  L  L+ L+L +N  E 
Sbjct: 98  NHIRTIEIG--AFNGLANL---NTLELFDNRL--TTIPNGAFVYLSKLKELWLRNNPIES 150

Query: 267 LPAEI-GNLKNLQI 279
           +P+     + +L+ 
Sbjct: 151 IPSYAFNRIPSLRR 164

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =   99 bits (250), Expect = 6e-24
 Identities = 48/281 (17%), Positives = 91/281 (32%), Gaps = 60/281 (21%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
           +  + L+ + + +I P LANL  +  L L  N   +  + LS++  L  L +  +++  +
Sbjct: 112 LRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV 170

Query: 64  PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
                    L  L L YN + + S       L +L       N    +   + N+  L  
Sbjct: 171 T-PIANLTDLYSLSLNYNQIEDIS---PLASLTSLHYFTAYVNQITDITP-VANMTRLNS 225

Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNS 183
           +        +  N+     I+ ++ +  L  L                    L  +   +
Sbjct: 226 L-------KIGNNK-----ITDLSPLANLSQL------------------TWL--EIGTN 253

Query: 184 KIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFTTILDLTYNN 238
           +I  + I        +    K+KM     N++S +         L        L L  N 
Sbjct: 254 QI--SDI------NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLN------SLFLNNNQ 298

Query: 239 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
           L           L  L  L+L  N    +   + +L  +  
Sbjct: 299 LGN-EDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDS 337

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 98.0 bits (245), Expect = 2e-23
 Identities = 57/281 (20%), Positives = 99/281 (35%), Gaps = 62/281 (22%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
           +T + +  NK+ +I   L NL NL  L L  + I  +   L++L K+  LNLG N   S 
Sbjct: 90  LTNLYIGTNKITDISA-LQNLTNLRELYLNEDNISDIS-PLANLTKMYSLNLGANHNLSD 147

Query: 64  PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
                    L  L +T + + + +       L  L +L L  N  E +   + +L +L  
Sbjct: 148 LSPLSNMTGLNYLTVTESKVKDVT---PIANLTDLYSLSLNYNQIEDISP-LASLTSLHY 203

Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNS 183
                       N+     I+ +  +  +  L                    L     N+
Sbjct: 204 F-------TAYVNQ-----ITDITPVANMTRL------------------NSL--KIGNN 231

Query: 184 KIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFTTILDLTYNN 238
           KI  T +      + L    ++       N++S +         L       +L++  N 
Sbjct: 232 KI--TDL------SPLANLSQLTWLEIGTNQISDIN-AVKDLTKL------KMLNVGSNQ 276

Query: 239 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQ 278
           +++         L  L +L+L +N       E IG L NL 
Sbjct: 277 ISD---ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 93.4 bits (233), Expect = 1e-21
 Identities = 57/284 (20%), Positives = 106/284 (37%), Gaps = 46/284 (16%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
           IT++ ++  K+  I   +  L NLE L L  NQI  +   LS+L KL  L +G N+++ +
Sbjct: 46  ITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYIGTNKITDI 103

Query: 64  PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
                    L  L L  +N+++ S       L  + +L LG N      + + N+  L  
Sbjct: 104 S-ALQNLTNLRELYLNEDNISDIS---PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNY 159

Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAE--ELRE-DA 180
           +        + +++     +  +  I  L +L     +   +  +   LA    L    A
Sbjct: 160 LT-------VTESK-----VKDVTPIANLTDLYSLSLNYNQIEDI-SPLASLTSLHYFTA 206

Query: 181 RNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFTTILDLT 235
             ++I  T I      T +    ++       N+++ L         L        L++ 
Sbjct: 207 YVNQI--TDI------TPVANMTRLNSLKIGNNKITDLS-PLANLSQLT------WLEIG 251

Query: 236 YNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
            N +    +      L  L+ L +G N    +   + NL  L  
Sbjct: 252 TNQI--SDINA-VKDLTKLKMLNVGSNQISDISV-LNNLSQLNS 291

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 88.0 bits (219), Expect = 1e-19
 Identities = 39/280 (13%), Positives = 85/280 (30%), Gaps = 62/280 (22%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
             R  L    + ++      L ++  L +   ++ ++   +  L  L  LNL  N+++ +
Sbjct: 24  GIRAVLQKASVTDVVT-QEELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDI 81

Query: 64  PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
                    L  L +  N + +         L  LR LYL +++   +   + NL  +  
Sbjct: 82  S-PLSNLVKLTNLYIGTNKITD---ISALQNLTNLRELYLNEDNISDISP-LANLTKMYS 136

Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNS 183
           +        +  N      +S ++ +  +  L                    L      S
Sbjct: 137 L-------NLGANH----NLSDLSPLSNMTGL------------------NYL--TVTES 165

Query: 184 KIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFTTILDLTYNN 238
           K+    + P            +       N++  +     +   L             N 
Sbjct: 166 KV--KDVTPI------ANLTDLYSLSLNYNQIEDIS-PLASLTSLH------YFTAYVNQ 210

Query: 239 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 278
           + + +       +  L +L +G+N    L   + NL  L 
Sbjct: 211 ITDIT---PVANMTRLNSLKIGNNKITDLSP-LANLSQLT 246

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 85.3 bits (212), Expect = 7e-19
 Identities = 45/280 (16%), Positives = 84/280 (30%), Gaps = 62/280 (22%)

Query: 5   TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP 64
             +      + +I P  A+L       L    +  + T    L  +  L +   +++S+ 
Sbjct: 3   ATLATLPAPINQIFP-DADLAEGIRAVLQKASVTDVVT-QEELESITKLVVAGEKVASIQ 60

Query: 65  RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQII 124
            G      LE L+L  N + + S       L  L  LY+G N    + A + NL NL+ +
Sbjct: 61  -GIEYLTNLEYLNLNGNQITDIS---PLSNLVKLTNLYIGTNKITDISA-LQNLTNLREL 115

Query: 125 LETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSK 184
                   + ++      IS ++ +  L  +                    L     N  
Sbjct: 116 Y-------LNEDN-----ISDISPLANLTKM------------------YSL-NLGANHN 144

Query: 185 IKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNL 239
           +   S         L     +       +++  +         L        L L YN +
Sbjct: 145 LSDLS--------PLSNMTGLNYLTVTESKVKDVT-PIANLTDL------YSLSLNYNQI 189

Query: 240 NEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
            + S       L +L       N    +   + N+  L  
Sbjct: 190 EDIS---PLASLTSLHYFTAYVNQITDITP-VANMTRLNS 225

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 80.3 bits (199), Expect = 4e-17
 Identities = 46/259 (17%), Positives = 88/259 (33%), Gaps = 74/259 (28%)

Query: 5   TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP 64
             +T++ +K+K++ P +ANL +L  L+L  NQIE +   L+SL  L      +N+++ + 
Sbjct: 158 NYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDIS-PLASLTSLHYFTAYVNQITDIT 215

Query: 65  RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQII 124
                   L  L +  N + + S       L  L  L +G N    + A + +L  L+++
Sbjct: 216 -PVANMTRLNSLKIGNNKITDLS---PLANLSQLTWLEIGTNQISDINA-VKDLTKLKML 270

Query: 125 LETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSK 184
                   +  N+     IS ++ +  L  L                    L        
Sbjct: 271 -------NVGSNQ-----ISDISVLNNLSQL------------------NSLF------- 293

Query: 185 IKFTSIFPFMVDTGLCKNPKIKMNRLSSL-PRGFGAFPVLEAFSFTTILDLTYNNLNEQS 243
                               +  N+L +      G    L      T L L+ N++    
Sbjct: 294 --------------------LNNNQLGNEDMEVIGGLTNL------TTLFLSQNHI--TD 325

Query: 244 LPGNFFMLETLRALYLGDN 262
           +      L  + +    + 
Sbjct: 326 IR-PLASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 65.6 bits (161), Expect = 4e-12
 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 5   TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSL 63
             + +  N++ +I   L NL  L  L L NNQ+       +  L  L  L L  N ++ +
Sbjct: 268 KMLNVGSNQISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326

Query: 64  PRGFGAFPVLEVLDLTYNNLNE 85
                +   ++  D     + +
Sbjct: 327 R-PLASLSKMDSADFANQVIKK 347

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  101 bits (253), Expect = 9e-24
 Identities = 37/291 (12%), Positives = 98/291 (33%), Gaps = 29/291 (9%)

Query: 9   LSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTS-LSSLPKLRILNLGMNRLSSLPRG 66
           L  +++  I      +L +LE L L +N + +L +S    L  L+ LNL  N   +L   
Sbjct: 57  LKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT 116

Query: 67  --FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQI 123
             F     L+ L +       +    +F  L +L  L +         ++ + +++++  
Sbjct: 117 SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176

Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRE----- 178
           +        +  +    +       +  +  L     +    +     + E         
Sbjct: 177 L-------TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA 229

Query: 179 -----DARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILD 233
                    S  +   +  ++++    +     +N L           V+        + 
Sbjct: 230 FRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN--PSESDVVSELGKVETVT 287

Query: 234 LTYNNLNE----QSLPGNFFMLETLRALYLGDNDFEVLPAEIG-NLKNLQI 279
           +   ++ +      L   + +LE ++ + + ++   ++P     +LK+L+ 
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF 338

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 92.5 bits (230), Expect = 8e-21
 Identities = 48/303 (15%), Positives = 96/303 (31%), Gaps = 44/303 (14%)

Query: 5   TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTS--LSSLPKLRILNLG-MNRL 60
             + LS N L  +       L +L+ L L  N  +TL  +    +L  L+ L +G +   
Sbjct: 77  EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136

Query: 61  SSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGN-L 118
           S + R  F     L  L++   +L       +   +  +  L L  ++   L     + L
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALSLRNYQ-SQSLKSIRDIHHLTLHLSESAFLLEIFADIL 195

Query: 119 KNLQII-----------------LETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCAS 161
            +++ +                  E   P      RG ++   S   ++ L   +   + 
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255

Query: 162 KFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAF 220
                  +  L      D   S+    S    +    + +   I    L       +   
Sbjct: 256 VEFDDCTLNGL-----GDFNPSESDVVSELGKVETVTIRRL-HIPQFYLFYDLSTVYSLL 309

Query: 221 PVLEAFSFTTILDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVL----PAEIGNLK 275
             ++       + +  + +    +P +F   L++L  L L +N          A  G   
Sbjct: 310 EKVK------RITVENSKV--FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP 361

Query: 276 NLQ 278
           +LQ
Sbjct: 362 SLQ 364

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 90.9 bits (226), Expect = 3e-20
 Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 12/129 (9%)

Query: 4   ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETL----PTSLSSLPKLRILNLGMN 58
           + RIT+ ++K+  +P     +L +LE L L  N +            + P L+ L L  N
Sbjct: 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371

Query: 59  RLSSLPRGFGAF---PVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI 115
            L S+ +          L  LD++ N      +P +    E +R L L      V+   I
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTF--HPMPDSCQWPEKMRFLNLSSTGIRVVKTCI 429

Query: 116 GNLKNLQII 124
              + L+++
Sbjct: 430 --PQTLEVL 436

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 87.9 bits (218), Expect = 3e-19
 Identities = 59/307 (19%), Positives = 112/307 (36%), Gaps = 40/307 (13%)

Query: 9   LSHNKLKEIPPGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLPRG- 66
                   IP GL     ++ L L  N+I  +    L +   L++L L  +R++++    
Sbjct: 12  GRSRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA 69

Query: 67  FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLP--AEIGNLKNLQI 123
           F +   LE LDL+ N+L   SL  ++F  L +L+ L L  N ++ L   +   NL NLQ 
Sbjct: 70  FYSLGSLEHLDLSDNHL--SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127

Query: 124 ILETFLPDMMEKNRGHIVGISSM---------------AGIVGLPNL----VPYCASKFA 164
           +    +    E  R    G++S+                 +  + ++    +    S F 
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187

Query: 165 VRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLE 224
           +    + L+     + R++ +      P  VD       K+           F     L 
Sbjct: 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL 247

Query: 225 AF----SFTTILDLTYNNLNEQSLPGNFFMLE-------TLRALYLGDNDFEVLPAEI-G 272
            +    S     D T N L + +   +  + E       T+R L++         + +  
Sbjct: 248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307

Query: 273 NLKNLQI 279
            L+ ++ 
Sbjct: 308 LLEKVKR 314

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 86.3 bits (214), Expect = 1e-18
 Identities = 35/138 (25%), Positives = 52/138 (37%), Gaps = 25/138 (18%)

Query: 9   LSHNKLKEIPPG---LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPR 65
           LS N L+ +      L  L NL  L +  N    +P S     K+R LNL    +  +  
Sbjct: 368 LSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKT 427

Query: 66  GFGAFPVLEVLDLTYNNLNE------------------QSLPGNFFMLETLRALYLGDND 107
                  LEVLD++ NNL+                   ++LP        L  + +  N 
Sbjct: 428 --CIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASL-FPVLLVMKISRNQ 484

Query: 108 FEVLPAEI-GNLKNLQII 124
            + +P  I   L +LQ I
Sbjct: 485 LKSVPDGIFDRLTSLQKI 502

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 82.9 bits (205), Expect = 1e-17
 Identities = 45/323 (13%), Positives = 96/323 (29%), Gaps = 53/323 (16%)

Query: 4   ITRITLSHNKLKEIPPG--LANLVNLEILTL-FNNQIETLP-TSLSSLPKLRILNLGMNR 59
           +  + L  N  + +       NL NL+ L +        +     + L  L  L +    
Sbjct: 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159

Query: 60  LSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNL 118
           L +       +   +  L L  +      L     +L ++R L L D +          +
Sbjct: 160 LRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPV 218

Query: 119 KNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYC----ASKFAVRGLMEALAE 174
             +   ++          RG ++   S   ++ L   +            + GL +    
Sbjct: 219 DEVSSPMKKL------AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS 272

Query: 175 ELREDARNSKIKFTSI---------FPFMVDTGLCKNPKIKM-----NRLSSLPRGFGA- 219
           E    +   K++  +I           + + T      K+K      +++  +P  F   
Sbjct: 273 ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQH 332

Query: 220 ---------------------FPVLEAFSFTTILDLTYNNLNEQSLPGNFFM-LETLRAL 257
                                     A+     L L+ N+L      G   + L+ L +L
Sbjct: 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL 392

Query: 258 YLGDNDFEVLPAEIGNLKNLQIM 280
            +  N F  +P      + ++ +
Sbjct: 393 DISRNTFHPMPDSCQWPEKMRFL 415

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 82.1 bits (203), Expect = 2e-17
 Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 7/130 (5%)

Query: 1   MLYITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMN 58
            + I R+ +    L        + L  ++ +T+ N+++  +P +    L  L  L+L  N
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344

Query: 59  RLSSLPRG----FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPA 113
            +           GA+P L+ L L+ N+L      G   + L+ L +L +  N F  +P 
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD 404

Query: 114 EIGNLKNLQI 123
                + ++ 
Sbjct: 405 SCQWPEKMRF 414

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 76.7 bits (189), Expect = 1e-15
 Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 9/101 (8%)

Query: 9   LSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFG 68
           LS   ++ +   +     LE+L + NN +++       LP+L+ L +  N+L +LP    
Sbjct: 417 LSSTGIRVVKTCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPDASL 471

Query: 69  AFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDF 108
            FPVL V+ ++ N L   S+P   F  L +L+ ++L  N +
Sbjct: 472 -FPVLLVMKISRNQLK--SVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 70.9 bits (174), Expect = 1e-13
 Identities = 45/302 (14%), Positives = 91/302 (30%), Gaps = 66/302 (21%)

Query: 4   ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTS------------LSSLPKL 50
           I  +TL  ++   +       L ++  L L +  +     S              +    
Sbjct: 174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233

Query: 51  RILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLE-------TLRALYL 103
            + +   N L  L R       +E  D T N L + +   +  + E       T+R L++
Sbjct: 234 VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI 293

Query: 104 GDNDFEVLPAEI-GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASK 162
                    + +   L+ ++ I        +E +   +  +        L +L       
Sbjct: 294 PQFYLFYDLSTVYSLLEKVKRI-------TVENS--KVFLVPCSFS-QHLKSL------- 336

Query: 163 FAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIK-----MNRLSSLPRGF 217
                      E L  D   + +    +            P ++      N L S+ +  
Sbjct: 337 -----------EFL--DLSENLMVEEYLKNSACKGAW---PSLQTLVLSQNHLRSMQKTG 380

Query: 218 GAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL 277
                L+     T LD++ N      +P +    E +R L L      V+   I   + L
Sbjct: 381 EILLTLKN---LTSLDISRNTF--HPMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTL 433

Query: 278 QI 279
           ++
Sbjct: 434 EV 435

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 69.8 bits (171), Expect = 2e-13
 Identities = 45/293 (15%), Positives = 89/293 (30%), Gaps = 73/293 (24%)

Query: 9   LSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSS---------LPKLRILNLGMNR 59
            S N+L ++   +  L  +E      N +     S S             +R L++    
Sbjct: 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY 297

Query: 60  LSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVL----PA 113
           L       +     ++ + +  + +    +P +F   L++L  L L +N          A
Sbjct: 298 LFYDLSTVYSLLEKVKRITVENSKV--FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA 355

Query: 114 EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIV-GLPNLVPYCASKFAVRGLMEAL 172
             G   +LQ +       ++ +N   +  +     I+  L NL                 
Sbjct: 356 CKGAWPSLQTL-------VLSQNH--LRSMQKTGEILLTLKNL----------------- 389

Query: 173 AEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFS 227
              L  D   +           +        K++        +  +              
Sbjct: 390 -TSL--DISRNTFHP-------MPDSCQWPEKMRFLNLSSTGIRVVKTC--------IPQ 431

Query: 228 FTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIM 280
              +LD++ NNL+  S       L  L+ LY+  N  + LP +      L +M
Sbjct: 432 TLEVLDVSNNNLD--SFSLF---LPRLQELYISRNKLKTLP-DASLFPVLLVM 478

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 66.3 bits (162), Expect = 4e-12
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 5/82 (6%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
           +  + +S+N L         L  L+ L +  N+++TLP   S  P L ++ +  N+L S+
Sbjct: 433 LEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLP-DASLFPVLLVMKISRNQLKSV 488

Query: 64  PRG-FGAFPVLEVLDLTYNNLN 84
           P G F     L+ + L  N  +
Sbjct: 489 PDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.2 bits (128), Expect = 7e-08
 Identities = 31/242 (12%), Positives = 72/242 (29%), Gaps = 54/242 (22%)

Query: 46  SLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGD 105
           S     + +      +S+P G      ++ LDL++N +      G+      L+ L L  
Sbjct: 3   SCDASGVCDGRSRSFTSIPSGL--TAAMKSLDLSFNKITYIG-HGDLRACANLQVLILKS 59

Query: 106 NDFEVLPAEI-GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFA 164
           +    +  +   +L +L+ +        +  N   +  +SS      L +L         
Sbjct: 60  SRINTIEGDAFYSLGSLEHL-------DLSDNH--LSSLSSSW-FGPLSSL--------- 100

Query: 165 VRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIK------MNRLSSLPRG-F 217
                    + L        +         V +       ++      +   S + R  F
Sbjct: 101 ---------KYLN-------LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144

Query: 218 GAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGN-LKN 276
                L        L++   +L       +   +  +  L L  ++   L     + L +
Sbjct: 145 AGLTSLN------ELEIKALSLRNYQ-SQSLKSIRDIHHLTLHLSESAFLLEIFADILSS 197

Query: 277 LQ 278
           ++
Sbjct: 198 VR 199

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  100 bits (251), Expect = 1e-23
 Identities = 64/268 (23%), Positives = 99/268 (36%), Gaps = 53/268 (19%)

Query: 4   ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLS 61
              + L  N ++ I      +L +LE+L L  N I  +   + + L  L  L L  N L+
Sbjct: 77  TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136

Query: 62  SLPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGD-NDFEVLPAEI-GN 117
            +P G F     L  L L  N +  +S+P   F  + +L  L LG+    E +       
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPI--ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194

Query: 118 LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELR 177
           L NL+ +        +         I  M  +  L  L                  EEL 
Sbjct: 195 LFNLKYLN-------LGMCN-----IKDMPNLTPLVGL------------------EEL- 223

Query: 178 EDARNSKIKFTSIFPFMVDTGLCKNPKIKM--NRLSSLPRGFGAFPVLEAFSFTTILDLT 235
            +   +         F    GL    K+ +  +++S + R   AF  L +      L+L 
Sbjct: 224 -EMSGNHFPEIRPGSF---HGLSSLKKLWVMNSQVSLIER--NAFDGLASL---VELNLA 274

Query: 236 YNNLNEQSLPGNFF-MLETLRALYLGDN 262
           +NNL   SLP + F  L  L  L+L  N
Sbjct: 275 HNNL--SSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 74.4 bits (183), Expect = 7e-15
 Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 5   TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSS 62
             + +S N   EI PG    L +L+ L + N+Q+  +   +   L  L  LNL  N LSS
Sbjct: 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280

Query: 63  LPRG-FGAFPVLEVLDLTYNNLN 84
           LP   F     L  L L +N  N
Sbjct: 281 LPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 70.5 bits (173), Expect = 1e-13
 Identities = 52/248 (20%), Positives = 81/248 (32%), Gaps = 68/248 (27%)

Query: 34  NNQIETLPTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNF 92
              +  +P  +      R LNL  N +  +    F     LEVL L  N++ +    G F
Sbjct: 63  RRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE-VGAF 119

Query: 93  FMLETLRALYLGDNDFEVLPAEI-GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVG 151
             L +L  L L DN   V+P+     L  L+ +        +  N   I  I S A    
Sbjct: 120 NGLASLNTLELFDNWLTVIPSGAFEYLSKLREL-------WLRNNP--IESIPSYA-FNR 169

Query: 152 LPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLS 211
           +P+L                L  +L E                            + +L 
Sbjct: 170 VPSL--------------MRL--DLGE----------------------------LKKLE 185

Query: 212 SLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE- 270
            +    GAF  L    +   L+L   N+  + +P N   L  L  L +  N F  +    
Sbjct: 186 YISE--GAFEGLFNLKY---LNLGMCNI--KDMP-NLTPLVGLEELEMSGNHFPEIRPGS 237

Query: 271 IGNLKNLQ 278
              L +L+
Sbjct: 238 FHGLSSLK 245

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 99.3 bits (248), Expect = 2e-23
 Identities = 55/301 (18%), Positives = 99/301 (32%), Gaps = 78/301 (25%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSL---------------- 47
           +  +  S N L E+P    +L +L +       +  LP  L  L                
Sbjct: 93  LESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNS 152

Query: 48  PKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDND 107
             L+I+++  N L  LP    +   LE +    N L  + LP     L  L A+Y  +N 
Sbjct: 153 SFLKIIDVDNNSLKKLPDLPPS---LEFIAAGNNQL--EELP-ELQNLPFLTAIYADNNS 206

Query: 108 FEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRG 167
            + LP    +L+++              N      +  +  +  LP L            
Sbjct: 207 LKKLPDLPLSLESIVA----------GNNI-----LEELPELQNLPFL------------ 239

Query: 168 LMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAF- 226
                   +   A N+ +   ++          +   ++ N L+ LP    +   L+   
Sbjct: 240 ------TTI--YADNNLL--KTLPDLP---PSLEALNVRDNYLTDLPELPQSLTFLDVSE 286

Query: 227 -SFTTI---------LDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKN 276
             F+ +         L+ + N +   SL        +L  L + +N    LPA    L+ 
Sbjct: 287 NIFSGLSELPPNLYYLNASSNEIR--SLCDL---PPSLEELNVSNNKLIELPALPPRLER 341

Query: 277 L 277
           L
Sbjct: 342 L 342

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 97.0 bits (242), Expect = 1e-22
 Identities = 56/276 (20%), Positives = 94/276 (34%), Gaps = 64/276 (23%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
              + L++  L  +P    +L   E L    N +  LP    SL  L + N  +  LS L
Sbjct: 73  AHELELNNLGLSSLPELPPHL---ESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL 129

Query: 64  PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
           P      P+LE L ++ N L  + LP        L+ + + +N  + LP    +L+ +  
Sbjct: 130 P------PLLEYLGVSNNQL--EKLP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAA 180

Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNS 183
                       N+     +  +  +  LP L                    +   A N+
Sbjct: 181 ----------GNNQ-----LEELPELQNLPFL------------------TAI--YADNN 205

Query: 184 KIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQS 243
            +    +          ++     N L  LP      P L      T +    N L  ++
Sbjct: 206 SL--KKLPDLP---LSLESIVAGNNILEELP-ELQNLPFL------TTIYADNNLL--KT 251

Query: 244 LPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
           LP    +  +L AL + DN    LP    +L  L +
Sbjct: 252 LPD---LPPSLEALNVRDNYLTDLPELPQSLTFLDV 284

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 97.0 bits (242), Expect = 2e-22
 Identities = 62/280 (22%), Positives = 101/280 (36%), Gaps = 54/280 (19%)

Query: 5   TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP 64
             + +S+N+L+++P  L N   L+I+ + NN ++ LP      P L  +  G N+L  LP
Sbjct: 134 EYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLP---DLPPSLEFIAAGNNQLEELP 189

Query: 65  RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQII 124
                 P L  +    N+L  + LP     LE+   +  G+N  E LP E+ NL  L  I
Sbjct: 190 -ELQNLPFLTAIYADNNSL--KKLPDLPLSLES---IVAGNNILEELP-ELQNLPFLTTI 242

Query: 125 LETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELR-----ED 179
                    + N            +  LP+L P   +       +  L E  +     + 
Sbjct: 243 Y-------ADNNL-----------LKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDV 284

Query: 180 ARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNL 239
           + N     + + P +             N + SL     +            L+++ N L
Sbjct: 285 SENIFSGLSELPPNLYYLNASS------NEIRSLCDLPPSL---------EELNVSNNKL 329

Query: 240 NEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
               LP        L  L    N    +P    NLK L +
Sbjct: 330 --IELPAL---PPRLERLIASFNHLAEVPELPQNLKQLHV 364

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 80.4 bits (199), Expect = 7e-17
 Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 27/136 (19%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
           +  +  S N+++ +        +LE L + NN++  LP   +  P+L  L    N L+ +
Sbjct: 299 LYYLNASSNEIRSLCD---LPPSLEELNVSNNKLIELP---ALPPRLERLIASFNHLAEV 352

Query: 64  PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRA----------------LYLGDND 107
           P        L+ L + YN L     P     +E LR                 L++  N 
Sbjct: 353 PELPQN---LKQLHVEYNPLR--EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407

Query: 108 FEVLPAEIGNLKNLQI 123
               P    ++++L++
Sbjct: 408 LREFPDIPESVEDLRM 423

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 72.0 bits (177), Expect = 4e-14
 Identities = 47/288 (16%), Positives = 84/288 (29%), Gaps = 51/288 (17%)

Query: 17  IPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRL-SSLPRGFGA------ 69
           I P   +   L+     ++ +  +P    ++          +    + P G G       
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 70  -------FPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 122
                        L+L    L   SLP     LE+   L    N    LP    +LK+L 
Sbjct: 63  SRLRDCLDRQAHELELNNLGL--SSLPELPPHLES---LVASCNSLTELPELPQSLKSLL 117

Query: 123 II------LETFLPDMME----KNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEAL 172
           +       L    P +       N+     +  +  +     L        +++ L +  
Sbjct: 118 VDNNNLKALSDLPPLLEYLGVSNNQ-----LEKLPELQNSSFLKIIDVDNNSLKKLPDLP 172

Query: 173 AEELRE-DARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTI 231
              L    A N+++    +        L        N L  LP    +            
Sbjct: 173 -PSLEFIAAGNNQL--EELPELQNLPFL-TAIYADNNSLKKLPDLPLSL---------ES 219

Query: 232 LDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
           +    N L  + LP     L  L  +Y  +N  + LP    +L+ L +
Sbjct: 220 IVAGNNIL--EELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNV 264

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 20/118 (16%), Positives = 35/118 (29%), Gaps = 23/118 (19%)

Query: 5   TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSL----------------P 48
            R+  S N L E+P    NL   + L +  N +   P    S+                 
Sbjct: 340 ERLIASFNHLAEVPELPQNL---KQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQ 396

Query: 49  KLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDN 106
            L+ L++  N L   P    +   +E L +    +            + L       +
Sbjct: 397 NLKQLHVETNPLREFPDIPES---VEDLRMNSERVV-DPYEFAHETTDKLEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 20/97 (20%)

Query: 5   TRITLSHNKLKEIPPGLANLV----------------NLEILTLFNNQIETLPTSLSSLP 48
            ++ + +N L+E P    ++                 NL+ L +  N +   P    S+ 
Sbjct: 360 KQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVE 419

Query: 49  KLRILNLGMNRLSSLPR-GFGAFPVLEVLDLTYNNLN 84
            LR+ +    R+             LE     +++ +
Sbjct: 420 DLRMNS---ERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  100 bits (250), Expect = 3e-23
 Identities = 49/282 (17%), Positives = 88/282 (31%), Gaps = 67/282 (23%)

Query: 1   MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRL 60
           +  ++ ++L+   +K +   +      + L++   Q++  PT    LP L+ L L MN+ 
Sbjct: 284 LANVSAMSLAGVSIKYLED-VPKHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKG 340

Query: 61  SSLPRGFGAFPVLEVLDLTYNNLNE-QSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLK 119
           S   +   A P L  LDL+ N L+       +     +LR L L  N   ++ A    L+
Sbjct: 341 SISFK-KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLE 399

Query: 120 NLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRED 179
            LQ +         + +   +  ++  +  + L  L                    L   
Sbjct: 400 ELQHL-------DFQHST--LKRVTEFSAFLSLEKL------------------LYLD-- 430

Query: 180 ARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILDLTYNN 238
                                    I          G F     L        L +  N+
Sbjct: 431 -------------------------ISYTNTKIDFDGIFLGLTSLN------TLKMAGNS 459

Query: 239 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQI 279
             + +L   F     L  L L     E +   +   L  LQ+
Sbjct: 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 99.0 bits (247), Expect = 5e-23
 Identities = 54/286 (18%), Positives = 96/286 (33%), Gaps = 25/286 (8%)

Query: 5   TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSS 62
             + LS  +++ I       L +L  L L  N I++  P S S L  L  L     +L+S
Sbjct: 59  QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS 118

Query: 63  LPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKN 120
           L     G    L+ L++ +N ++   LP  F  L  L  + L  N  + +    +  L+ 
Sbjct: 119 LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178

Query: 121 LQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLV-----PYCASKFAVRGLMEALA-- 173
              +  +   DM   +   I  I   A       L          S   ++  ++ LA  
Sbjct: 179 NPQVNLSL--DM---SLNPIDFIQDQAF--QGIKLHELTLRGNFNSSNIMKTCLQNLAGL 231

Query: 174 EELR-EDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTIL 232
              R         +   IF   +  GLC +  I   RL+               +  + +
Sbjct: 232 HVHRLILGEFKDERNLEIFEPSIMEGLC-DVTIDEFRLTYTNDFSDDIVKFHCLANVSAM 290

Query: 233 DLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 278
            L   ++    L          ++L +     +  P    +L  L+
Sbjct: 291 SLAGVSIK--YLEDVPKHF-KWQSLSIIRCQLKQFPT--LDLPFLK 331

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 92.4 bits (230), Expect = 1e-20
 Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 4/120 (3%)

Query: 9   LSHNKLKEIPPGLANLVNLEILTLFNNQIETLP--TSLSSLPKLRILNLGMNRLSSLPRG 66
           LS N    +      L  L+ L   ++ ++ +   ++  SL KL  L++          G
Sbjct: 383 LSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442

Query: 67  -FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQII 124
            F     L  L +  N+  + +L   F     L  L L     E +   +   L  LQ++
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 90.9 bits (226), Expect = 3e-20
 Identities = 49/266 (18%), Positives = 78/266 (29%), Gaps = 45/266 (16%)

Query: 5   TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLP---TSLSSLPKLRILNLGMNRLS 61
             +TL+ NK   I      L +L  L L  N +        S      LR L+L  N   
Sbjct: 331 KSLTLTMNKGS-ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389

Query: 62  SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKN 120
            +   F     L+ LD  ++ L   +    F  LE L  L +   + ++    I   L +
Sbjct: 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 121 LQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDA 180
           L  +        M  N       +         NL                    L  D 
Sbjct: 450 LNTLK-------MAGN--SFKDNTLSNVFANTTNL------------------TFL--DL 480

Query: 181 RNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILDLTYNNL 239
              +++  S   F     L +   +  N L  L    +     L        LD ++N +
Sbjct: 481 SKCQLEQISWGVFDTLHRL-QLLNMSHNNLLFLDSSHYNQLYSLS------TLDCSFNRI 533

Query: 240 NEQSLPGNFFMLET-LRALYLGDNDF 264
             ++  G        L    L +N  
Sbjct: 534 --ETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 90.1 bits (224), Expect = 6e-20
 Identities = 51/299 (17%), Positives = 90/299 (30%), Gaps = 58/299 (19%)

Query: 9   LSHNKLKEIPPG--LANLVNLEILTLFNNQIETLP-TSLSSLPKLRI----LNLGMNRLS 61
           ++HN +         +NL NL  + L  N I+T+    L  L +       L++ +N + 
Sbjct: 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID 194

Query: 62  SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL 121
            +         L  L L  N  +   +      L  L    L   +F+       NL+  
Sbjct: 195 FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER----NLEIF 250

Query: 122 QIILETFLPDMMEK----NRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELR 177
           +  +   L D+          +      +     L N+                    + 
Sbjct: 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANV------------------SAM- 290

Query: 178 EDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLE-----------AF 226
                  IK+    P        ++  I   +L   P      P L+           +F
Sbjct: 291 -SLAGVSIKYLEDVPKH---FKWQSLSIIRCQLKQFP--TLDLPFLKSLTLTMNKGSISF 344

Query: 227 SFT-----TILDLTYNNLNE-QSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
                   + LDL+ N L+       +     +LR L L  N   ++ A    L+ LQ 
Sbjct: 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQH 403

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 48/300 (16%), Positives = 83/300 (27%), Gaps = 64/300 (21%)

Query: 9   LSHNKLKEIPPGLANLVNLEILTLFNNQIET--LPTSLSSLPKLRILNL------GMNRL 60
           +S N +  I       + L  LTL  N   +  + T L +L  L +  L          L
Sbjct: 188 MSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247

Query: 61  SSLPRG-FGAFPVLEVLDLTYNNLNEQSL-PGNFFMLETLRALYLGDNDFEVLPAEIGNL 118
                        + + +      N+ S     F  L  + A+ L     + L     + 
Sbjct: 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF 307

Query: 119 K---------NLQIILETFLPD----MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
           K          L+      LP      +  N+      S     V LP+L          
Sbjct: 308 KWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNK-----GSISFKKVALPSL---------- 352

Query: 166 RGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAF 220
                     L  D   + + F+    +           ++      N    +   F   
Sbjct: 353 --------SYL--DLSRNALSFSGCCSY----SDLGTNSLRHLDLSFNGAIIMSANFMGL 398

Query: 221 PVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQI 279
             L+       LD  ++ L   +    F  LE L  L +   + ++    I   L +L  
Sbjct: 399 EELQ------HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.9 bits (169), Expect = 5e-13
 Identities = 45/316 (14%), Positives = 84/316 (26%), Gaps = 80/316 (25%)

Query: 2   LYITRITLSHNKLKEIPPGLA--NLVNLEILTLFNNQIETL-------PTSLSSLPKLRI 52
           + +  +TL  N            NL  L +  L   + +         P+ +  L  + I
Sbjct: 204 IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263

Query: 53  LNLGMNRLSSL---PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE 109
               +   +        F     +  + L   ++    L          ++L +     +
Sbjct: 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK--YLEDVPKHF-KWQSLSIIRCQLK 320

Query: 110 VLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLM 169
             P    +L  L+ +        +  N+      S     V LP+L              
Sbjct: 321 QFPT--LDLPFLKSL-------TLTMNK-----GSISFKKVALPSL-------------- 352

Query: 170 EALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLE 224
                 L  D   + + F+    +           ++      N    +   F     L+
Sbjct: 353 ----SYL--DLSRNALSFSGCCSY----SDLGTNSLRHLDLSFNGAIIMSANFMGLEELQ 402

Query: 225 AFSFT-------------------TILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE 265
              F                      LD++Y N  +    G F  L +L  L +  N F+
Sbjct: 403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT-KIDFDGIFLGLTSLNTLKMAGNSFK 461

Query: 266 --VLPAEIGNLKNLQI 279
              L     N  NL  
Sbjct: 462 DNTLSNVFANTTNLTF 477

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 3/79 (3%)

Query: 9   LSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTS-LSSLPKLRILNLGMNRLSSLPRG 66
           LS  +L++I  G    L  L++L + +N +  L +S  + L  L  L+   NR+ +    
Sbjct: 480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI 539

Query: 67  FGAFPV-LEVLDLTYNNLN 84
              FP  L   +LT N++ 
Sbjct: 540 LQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.2 bits (136), Expect = 8e-09
 Identities = 37/228 (16%), Positives = 69/228 (30%), Gaps = 67/228 (29%)

Query: 58  NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IG 116
            +LS +P         + +DL++N L       +F     L+ L L   + E +  +   
Sbjct: 21  QKLSKVPDDI--PSSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETIEDKAWH 77

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
            L +L  +       ++  N   I   S  +   GL +L                  E L
Sbjct: 78  GLHHLSNL-------ILTGNP--IQSFSPGS-FSGLTSL------------------ENL 109

Query: 177 REDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILDLT 235
                                   +       +L+SL     G    L+       L++ 
Sbjct: 110 V---------------------AVET------KLASLESFPIGQLITLK------KLNVA 136

Query: 236 YNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQIMLE 282
           +N ++   LP  F  L  L  + L  N  + +    +  L+    +  
Sbjct: 137 HNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL 184

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 5   TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSS 62
             + +SHN L  +       L +L  L    N+IET           L   NL  N ++ 
Sbjct: 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC 559

Query: 63  LP 64
           + 
Sbjct: 560 IC 561

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 97.4 bits (243), Expect = 3e-23
 Identities = 62/290 (21%), Positives = 98/290 (33%), Gaps = 62/290 (21%)

Query: 4   ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLS 61
              + L +NK+ EI  G   NL NL  L L NN+I  + P + + L KL  L L  N+L 
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113

Query: 62  SLPRGFGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEIG---N 117
            LP        L+ L +  N +    +    F  L  +  + LG N  +    E G    
Sbjct: 114 ELPE--KMPKTLQELRVHENEI--TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169

Query: 118 LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELR 177
           +K L  I        +      I  I         P+L                   EL 
Sbjct: 170 MKKLSYI-------RIADTN--ITTIPQGL----PPSL------------------TELH 198

Query: 178 EDARNSKIKFTSIFPFMVDTGLCKNPKIKMN--RLSSLPRGFGAFPVLEAFSFTTILDLT 235
            D  N   K T +       GL    K+ ++   +S++    G+            L L 
Sbjct: 199 LD-GN---KITKV-DAASLKGLNNLAKLGLSFNSISAVDN--GSLANT---PHLRELHLN 248

Query: 236 YNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-------IGNLKNLQ 278
            N L    +PG     + ++ +YL +N+   + +             +  
Sbjct: 249 NNKL--VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 296

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 93.1 bits (232), Expect = 1e-21
 Identities = 54/270 (20%), Positives = 100/270 (37%), Gaps = 55/270 (20%)

Query: 5   TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSL 63
            R+ LS N+LKE+P  +     L+ L +  N+I  +  +  + L ++ ++ LG N L S 
Sbjct: 103 ERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 160

Query: 64  PRGFGAF---PVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLK 119
               GAF     L  + +   N+   ++P       +L  L+L  N    + A     L 
Sbjct: 161 GIENGAFQGMKKLSYIRIADTNI--TTIPQGLP--PSLTELHLDGNKITKVDAASLKGLN 216

Query: 120 NLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRED 179
           NL  +        +  N   I  + + + +   P+L                   EL  +
Sbjct: 217 NLAKLG-------LSFNS--ISAVDNGS-LANTPHL------------------RELHLN 248

Query: 180 ARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRG-FGAFPVLEAFSFTTILD 233
             N+K+         V  GL  +  I++     N +S++    F         +  + + 
Sbjct: 249 --NNKLV-------KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 299

Query: 234 LTYNNLNEQSL-PGNFFMLETLRALYLGDN 262
           L  N +    + P  F  +    A+ LG+ 
Sbjct: 300 LFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 10/69 (14%)

Query: 1   MLYITRITLSHNKLKEIPPG-------LANLVNLEILTLFNNQIETL---PTSLSSLPKL 50
             YI  + L +N +  I               +   ++LF+N ++     P++   +   
Sbjct: 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321

Query: 51  RILNLGMNR 59
             + LG  +
Sbjct: 322 AAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 38/232 (16%), Positives = 72/232 (31%), Gaps = 72/232 (31%)

Query: 50  LRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDF 108
           LR++      L  +P+     P   +LDL  N +    +    F  L+ L  L L +N  
Sbjct: 33  LRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKI 88

Query: 109 EVLPAEI-GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRG 167
             +       L  L+ +        + KN+           +  LP  +P        + 
Sbjct: 89  SKISPGAFAPLVKLERL-------YLSKNQ-----------LKELPEKMP--------KT 122

Query: 168 LMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFS 227
           L     +ELR                           +  N ++ + +    F  L    
Sbjct: 123 L-----QELR---------------------------VHENEITKVRKS--VFNGLNQM- 147

Query: 228 FTTILDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEIGNLKNLQ 278
              +++L  N L    +    F  ++ L  + + D +   +P   G   +L 
Sbjct: 148 --IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GLPPSLT 195

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 97.9 bits (244), Expect = 4e-23
 Identities = 59/282 (20%), Positives = 96/282 (34%), Gaps = 38/282 (13%)

Query: 4   ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLS 61
           +  + LS+N++  I    L   VNL+ L L +N I T+   S SSL  L  L+L  N LS
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113

Query: 62  SLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDND-FEVLPAEI-GNL 118
           +L    F     L  L+L  N          F  L  L+ L +G+ D F  +  +    L
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 173

Query: 119 KNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRE 178
             L+ +        ++ +        S+  I  + +L+           L       L E
Sbjct: 174 TFLEEL-------EIDASDLQSYEPKSLKSIQNVSHLI-----------LHMKQHILLLE 215

Query: 179 DARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILDLTYN 237
              +       +        L     +     S L  G   +      F     + +T  
Sbjct: 216 IFVDVTSSVECLE-------LRDTD-LDTFHFSELSTGETNSLIKKFTF---RNVKITDE 264

Query: 238 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQ 278
           +L    +      +  L  L    N  + +P  I   L +LQ
Sbjct: 265 SL--FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQ 304

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 88.6 bits (220), Expect = 5e-20
 Identities = 47/271 (17%), Positives = 93/271 (34%), Gaps = 51/271 (18%)

Query: 5   TRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSS 62
             + L+ N +  I     ++L +LE L L  N +  L +S    L  L  LNL  N   +
Sbjct: 79  QALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT 138

Query: 63  LPRG--FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLK 119
           L     F     L++L +   +   +    +F  L  L  L +  +D +    +   +++
Sbjct: 139 LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ 198

Query: 120 NLQIILETFLPDMMEKNRGHIVGISSMAGIV--GLPNLVPYCASKFAVRGLMEALAEELR 177
           N+  +       ++   +        +  I      ++                  E L 
Sbjct: 199 NVSHL-------ILHMKQ-----HILLLEIFVDVTSSV------------------ECLE 228

Query: 178 -EDARNSKIKFTSIFPFMVDTGL----CKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTIL 232
             D       F+ +     ++ +     +N KI    L  + +       L        L
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLL------EL 282

Query: 233 DLTYNNLNEQSLPGNFF-MLETLRALYLGDN 262
           + + N L  +S+P   F  L +L+ ++L  N
Sbjct: 283 EFSRNQL--KSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 85.2 bits (211), Expect = 9e-19
 Identities = 62/285 (21%), Positives = 92/285 (32%), Gaps = 57/285 (20%)

Query: 9   LSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTS-LSSLPKLRILNLGMNRLSSLPRG- 66
            S   L  IP GL     ++ L L NN+I  +  S L     L+ L L  N ++++    
Sbjct: 38  GSSGSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS 95

Query: 67  FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEIGNLKNLQIIL 125
           F +   LE LDL+YN L   +L  ++F  L +L  L L  N ++ L  E     +L    
Sbjct: 96  FSSLGSLEHLDLSYNYL--SNLSSSWFKPLSSLTFLNLLGNPYKTLG-ETSLFSHL---- 148

Query: 126 ETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKI 185
            T L  +   N      I       GL  L                  EEL  D  +   
Sbjct: 149 -TKLQILRVGNMDTFTKIQRKD-FAGLTFL------------------EELEID-AS--- 184

Query: 186 KFTSIFPFMVDTGLCKNPKIK-----MNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNL- 239
              S  P      L     +      M +   L        V    S    L+L   +L 
Sbjct: 185 DLQSYEPKS----LKSIQNVSHLILHMKQHILLLE--IFVDVT---SSVECLELRDTDLD 235

Query: 240 --NEQSLPGNFF----MLETLRALYLGDNDFEVLPAEIGNLKNLQ 278
             +   L            T R + + D     +   +  +  L 
Sbjct: 236 TFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLL 280

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 69.4 bits (170), Expect = 2e-13
 Identities = 20/114 (17%), Positives = 42/114 (36%), Gaps = 13/114 (11%)

Query: 4   ITRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIETLP---------TSLSSLPKLRIL 53
           ++ + L   +   +         ++E L L +  ++T            SL      R +
Sbjct: 200 VSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259

Query: 54  NLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFF-MLETLRALYLGDN 106
            +    L  + +       L  L+ + N L  +S+P   F  L +L+ ++L  N
Sbjct: 260 KITDESLFQVMKLLNQISGLLELEFSRNQL--KSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.8 bits (153), Expect = 3e-11
 Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 5/89 (5%)

Query: 1   MLYITRITLSHNKLKEIPPG----LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLG 56
            L +    L      E+  G    L        + + +  +  +   L+ +  L  L   
Sbjct: 226 CLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFS 285

Query: 57  MNRLSSLPRG-FGAFPVLEVLDLTYNNLN 84
            N+L S+P G F     L+ + L  N  +
Sbjct: 286 RNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 39.7 bits (93), Expect = 9e-04
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 12/74 (16%)

Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEV 266
             L+S+P G               LDL+ N +    +   +      L+AL L  N    
Sbjct: 41  GSLNSIPSGL--------TEAVKSLDLSNNRI--TYISNSDLQRCVNLQALVLTSNGINT 90

Query: 267 LPAEI-GNLKNLQI 279
           +  +   +L +L+ 
Sbjct: 91  IEEDSFSSLGSLEH 104

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} Length = 207

 Score = 93.8 bits (234), Expect = 6e-23
 Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 4/71 (5%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
           L     +     V   +    V +P    Y A+K A+   +EA  +EL  +     +   
Sbjct: 105 LKHARFQKGARAVFFGAYPRYVQVPGFAAYAAAKGALEAYLEAARKELLRE----GVHLV 160

Query: 189 SIFPFMVDTGL 199
            +    V TGL
Sbjct: 161 LVRLPAVATGL 171

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 98.2 bits (245), Expect = 1e-22
 Identities = 56/313 (17%), Positives = 96/313 (30%), Gaps = 47/313 (15%)

Query: 4   ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLS 61
              + LS N L+ +      +   L++L L   +I+T+   +  SL  L  L L  N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 62  SLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL--PAEIGNL 118
           SL  G F     L+ L     NL           L+TL+ L +  N  +    P    NL
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 119 KNLQII------LETFLPDMMEK-------------NRGHIVGISSMAGIVGLPNL---- 155
            NL+ +      +++     +               +   +  I    G      L    
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP--GAFKEIRLHKLT 206

Query: 156 -------VPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMN 208
                  +    +       +E     L E      ++           GLC N  I+  
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL---EGLC-NLTIEEF 262

Query: 209 RLSSLPRGFGAFP-VLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL 267
           RL+ L         +    +  +   L    +       +F      + L L +  F   
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER---VKDFSYNFGWQHLELVNCKFGQF 319

Query: 268 PAE-IGNLKNLQI 279
           P   + +LK L  
Sbjct: 320 PTLKLKSLKRLTF 332

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 95.1 bits (237), Expect = 1e-21
 Identities = 51/280 (18%), Positives = 85/280 (30%), Gaps = 69/280 (24%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSS 62
           ++  +L    ++ +    +     + L L N +    PT  L SL +L   +       S
Sbjct: 284 VSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 342

Query: 63  LPRGFGAFPVLEVLDLTYNNLNEQSL-PGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL 121
                   P LE LDL+ N L+ +     + F   +L+ L L  N    + +    L+ L
Sbjct: 343 ----EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 398

Query: 122 QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDAR 181
           + +         + +   +  +S  +  + L NL                    L     
Sbjct: 399 EHL-------DFQHSN--LKQMSEFSVFLSLRNL------------------IYLD---- 427

Query: 182 NSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILDLTYNNLN 240
                                  I          G F     LE      +L +  N+  
Sbjct: 428 -----------------------ISHTHTRVAFNGIFNGLSSLE------VLKMAGNSFQ 458

Query: 241 EQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQI 279
           E  LP  F  L  L  L L     E L      +L +LQ+
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 92.0 bits (229), Expect = 1e-20
 Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 4/125 (3%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETL--PTSLSSLPKLRILNLGMNRLS 61
           +  + LS N +  +      L  LE L   ++ ++ +   +   SL  L  L++      
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 62  SLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLK 119
               G F     LEVL +  N+  E  LP  F  L  L  L L     E L      +L 
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

Query: 120 NLQII 124
           +LQ++
Sbjct: 495 SLQVL 499

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 91.6 bits (228), Expect = 2e-20
 Identities = 50/297 (16%), Positives = 94/297 (31%), Gaps = 53/297 (17%)

Query: 9   LSHNKLK--EIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRI----LNLGMNRLS 61
           ++HN ++  ++P   +NL NLE L L +N+I+++  T L  L ++ +    L+L +N ++
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 62  SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF-------EVLPAE 114
            +  G      L  L L  N  +   +      L  L    L   +F       +   + 
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 115 IGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAE 174
           +  L NL I       +              +     L N+                   
Sbjct: 251 LEGLCNLTI-------EEFRLAYLDYYLDDIIDLFNCLTNV------------------S 285

Query: 175 ELREDARNSKIKFTSIFPFMVD-----------TGLCKNPKIKMNRLSSLPRGFGAFPVL 223
                  +  I+    F +                        + RL+      G     
Sbjct: 286 SF--SLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 343

Query: 224 EAFSFTTILDLTYNNLNEQSL-PGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
                   LDL+ N L+ +     + F   +L+ L L  N    + +    L+ L+ 
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 400

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 88.2 bits (219), Expect = 2e-19
 Identities = 51/276 (18%), Positives = 84/276 (30%), Gaps = 56/276 (20%)

Query: 1   MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQI---ETLPTSLSSLPKLRILNLGM 57
           +  + R+T + NK         +L +LE L L  N +        S      L+ L+L  
Sbjct: 324 LKSLKRLTFTSNKGG-NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 58  NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IG 116
           N + ++   F     LE LD  ++NL + S    F  L  L  L +      V       
Sbjct: 383 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
            L +L+++        M  N               L NL                    L
Sbjct: 443 GLSSLEVLK-------MAGN--SFQENFLPDIFTELRNL------------------TFL 475

Query: 177 REDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRG-FGAFPVLEAFSFTT 230
             D    ++    + P            +++     N   SL    +     L       
Sbjct: 476 --DLSQCQL--EQLSPTA----FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL------Q 521

Query: 231 ILDLTYNNLNEQSLPGNFF--MLETLRALYLGDNDF 264
           +LD + N++   +           +L  L L  NDF
Sbjct: 522 VLDYSLNHI--MTSKKQELQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 87.4 bits (217), Expect = 4e-19
 Identities = 57/287 (19%), Positives = 93/287 (32%), Gaps = 57/287 (19%)

Query: 9   LSHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRG- 66
                  +IP  L    + + L L  N +  L   S  S P+L++L+L    + ++  G 
Sbjct: 14  CMELNFYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA 71

Query: 67  FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIGNLKNLQIIL 125
           + +   L  L LT N +      G F  L +L+ L   + +   L    IG+LK L+ + 
Sbjct: 72  YQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL- 129

Query: 126 ETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKI 185
                  +  N   I           L NL                  E L      S  
Sbjct: 130 ------NVAHN--LIQSFKLPEYFSNLTNL------------------EHLDL----SSN 159

Query: 186 KFTSIFPFMVDTGLCKNPKIK------MNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNL 239
           K  SI+   +   L + P +       +N ++ +  G      L        L L  N  
Sbjct: 160 KIQSIYCTDLR-VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL------HKLTLRNNFD 212

Query: 240 NEQSLPGNFFMLETLRALYLGDNDF-------EVLPAEIGNLKNLQI 279
           +   +      L  L    L   +F       +   + +  L NL I
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 86.2 bits (214), Expect = 1e-18
 Identities = 50/298 (16%), Positives = 83/298 (27%), Gaps = 68/298 (22%)

Query: 2   LYITRITLSHNKLK-EIPPG-LANLVNLEILTLFNNQIETLPT----SLSSLPKLRILNL 55
           + + ++TL +N     +    +  L  LE+  L   +            S+L  L  L +
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 56  GMNRLSSL-------PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF 108
              RL+ L          F     +    L    +       +F      + L L +  F
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER---VKDFSYNFGWQHLELVNCKF 316

Query: 109 EVLPAE-IGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRG 167
              P   + +LK L                       S    V LP+L            
Sbjct: 317 GQFPTLKLKSLKRLTF------------TSNKGGNAFS---EVDLPSL------------ 349

Query: 168 LMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPV 222
                 E L  D   + + F                 +K      N + ++   F     
Sbjct: 350 ------EFL--DLSRNGLSFKGCCSQ----SDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 397

Query: 223 LEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQI 279
           LE       LD  ++NL + S    F  L  L  L +      V        L +L++
Sbjct: 398 LE------HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 9   LSHNKLKEIPPG-LANLVNLEILTLFNNQIETL-PTSLSSLPK-LRILNLGMNRLS 61
           +SHN    +       L +L++L    N I T     L   P  L  LNL  N  +
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} Length = 319

 Score = 95.6 bits (238), Expect = 1e-22
 Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 10/97 (10%)

Query: 126 ETFLPDMMEKNR------GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRED 179
            TF+P M+E+ +      GH+V  +SMA  +   +   Y  +KFAVRGL E+L   L + 
Sbjct: 127 TTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSPGIYNTTKFAVRGLSESLHYSLLKY 186

Query: 180 ARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG 216
               +I  + + P +V + +  +  I+ + L    + 
Sbjct: 187 ----EIGVSVLCPGLVKSYIYASDDIRPDALKGEVKP 219

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... Length = 286

 Score = 94.6 bits (236), Expect = 2e-22
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 3/87 (3%)

Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
            LP M++++ G IV +SS+AG V  P +  Y ASKFA+ G   ++ +E      N  +  
Sbjct: 148 ALP-MLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVN--VSI 204

Query: 188 TSIFPFMVDTGLCKNPKIKMNRLSSLP 214
           T     ++DT         +  + + P
Sbjct: 205 TLCVLGLIDTETAMKAVSGIVHMQAAP 231

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 95.1 bits (237), Expect = 2e-22
 Identities = 44/269 (16%), Positives = 81/269 (30%), Gaps = 70/269 (26%)

Query: 5   TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
             + L +NK+ +I     + L  L+ L +  N +  +P +L     L  L +  NR+  +
Sbjct: 81  YALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKV 138

Query: 64  PRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 122
           P+G F     +  +++  N L         F    L  L + +     +P      + L 
Sbjct: 139 PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK--DLPETLN 196

Query: 123 IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARN 182
            +        ++ N+  I  I     ++    L                    L      
Sbjct: 197 EL-------HLDHNK--IQAIELED-LLRYSKL------------------YRLG----- 223

Query: 183 SKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILDLTYNNLNE 241
                           L  N      ++  +  G     P L        L L  N L  
Sbjct: 224 ----------------LGHN------QIRMIENGSLSFLPTLR------ELHLDNNKL-- 253

Query: 242 QSLPGNFFMLETLRALYLGDNDFEVLPAE 270
             +P     L+ L+ +YL  N+   +   
Sbjct: 254 SRVPAGLPDLKLLQVVYLHTNNITKVGVN 282

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 88.9 bits (221), Expect = 3e-20
 Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 6/115 (5%)

Query: 2   LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRL 60
           L +  + +S  KL  IP  L     L  L L +N+I+ +    L    KL  L LG N++
Sbjct: 172 LKLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229

Query: 61  SSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE 114
             +  G     P L  L L  N L    +P     L+ L+ +YL  N+   +   
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKL--SRVPAGLPDLKLLQVVYLHTNNITKVGVN 282

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 84.7 bits (210), Expect = 1e-18
 Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 7/122 (5%)

Query: 4   ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLS 61
            T + L +N + E+       L +L  L L NN+I  +   + S L KL+ L +  N L 
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115

Query: 62  SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEIGNLKN 120
            +P        L  L +  N +  + +P   F  L  +  + +G N  E    E G    
Sbjct: 116 EIPP--NLPSSLVELRIHDNRI--RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171

Query: 121 LQ 122
           L+
Sbjct: 172 LK 173

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 83.5 bits (207), Expect = 3e-18
 Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 9/111 (8%)

Query: 5   TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
            R+ L HN+++ I  G L+ L  L  L L NN++  +P  L  L  L+++ L  N ++ +
Sbjct: 220 YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKV 279

Query: 64  PRG-------FGAFPVLEVLDLTYNNLNEQSL-PGNFFMLETLRALYLGDN 106
                              + L  N +    + P  F  +    A+  G+ 
Sbjct: 280 GVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 77.4 bits (191), Expect = 4e-16
 Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 8/123 (6%)

Query: 4   ITRITLSHNKLKE--IPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLS 61
           +  I +  N L+     PG  + + L  L +   ++  +P  L     L  L+L  N++ 
Sbjct: 149 MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQ 206

Query: 62  SLPRG-FGAFPVLEVLDLTYNNLNEQSLPGN-FFMLETLRALYLGDNDFEVLPAEIGNLK 119
           ++       +  L  L L +N +  + +       L TLR L+L +N    +PA + +LK
Sbjct: 207 AIELEDLLRYSKLYRLGLGHNQI--RMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLK 264

Query: 120 NLQ 122
            LQ
Sbjct: 265 LLQ 267

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 74.7 bits (184), Expect = 3e-15
 Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 9/123 (7%)

Query: 5   TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSL 63
             +  S   LK +P  ++   +  +L L NN I  L       L  L  L L  N++S +
Sbjct: 36  RVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI 93

Query: 64  PRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNL 121
               F     L+ L ++ N+L    +P N     +L  L + DN    +P  +   L+N+
Sbjct: 94  HEKAFSPLRKLQKLYISKNHL--VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNM 149

Query: 122 QII 124
             I
Sbjct: 150 NCI 152

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 8/69 (11%), Positives = 21/69 (30%), Gaps = 10/69 (14%)

Query: 1   MLYITRITLSHNKLKEIPPG-------LANLVNLEILTLFNNQIETL---PTSLSSLPKL 50
           +  +  + L  N + ++                   ++LFNN +      P +   +   
Sbjct: 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR 322

Query: 51  RILNLGMNR 59
             +  G  +
Sbjct: 323 LAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 42/232 (18%), Positives = 72/232 (31%), Gaps = 73/232 (31%)

Query: 50  LRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDF 108
           LR++      L ++P+     P   +LDL  N++    L  + F  L+ L AL L +N  
Sbjct: 35  LRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDI--SELRKDDFKGLQHLYALVLVNNKI 90

Query: 109 EVLPAEI-GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRG 167
             +  +    L+ LQ +        + KN            +V +P  +P          
Sbjct: 91  SKIHEKAFSPLRKLQKL-------YISKNH-----------LVEIPPNLP--------SS 124

Query: 168 LMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAF 226
           L      ELR                           I  NR+  +P+G F     +   
Sbjct: 125 L-----VELR---------------------------IHDNRIRKVPKGVFSGLRNM--- 149

Query: 227 SFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 278
                +++  N L         F    L  L + +     +P      + L 
Sbjct: 150 ---NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK--DLPETLN 196

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 94.4 bits (235), Expect = 2e-22
 Identities = 39/123 (31%), Positives = 53/123 (43%), Gaps = 5/123 (4%)

Query: 5   TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSSL 63
             + LSHN+L+ +P     L  L +L +  N++ +LP      L +L+ L L  N L +L
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139

Query: 64  PRG-FGAFPVLEVLDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDFEVLPAEIGNLKNL 121
           P G     P LE L L  NNL    LP      LE L  L L +N    +P        L
Sbjct: 140 PPGLLTPTPKLEKLSLANNNL--TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197

Query: 122 QII 124
              
Sbjct: 198 PFA 200

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 90.2 bits (224), Expect = 8e-21
 Identities = 40/121 (33%), Positives = 54/121 (44%), Gaps = 6/121 (4%)

Query: 5   TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
           T + LS N L       L     L  L L   ++  L     +LP L  L+L  N+L SL
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSL 92

Query: 64  PRGFGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI-GNLKNL 121
           P      P L VLD+++N L   SLP G    L  L+ LYL  N+ + LP  +      L
Sbjct: 93  PLLGQTLPALTVLDVSFNRL--TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 122 Q 122
           +
Sbjct: 151 E 151

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 89.8 bits (223), Expect = 9e-21
 Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 6/121 (4%)

Query: 5   TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP 64
           T++ L   +L ++      L  L  L L +NQ+++LP    +LP L +L++  NRL+SLP
Sbjct: 58  TQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116

Query: 65  RG-FGAFPVLEVLDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDFEVLPAEI-GNLKNL 121
            G       L+ L L  N L  ++LP         L  L L +N+   LPA +   L+NL
Sbjct: 117 LGALRGLGELQELYLKGNEL--KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174

Query: 122 Q 122
            
Sbjct: 175 D 175

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 89.0 bits (221), Expect = 2e-20
 Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 5   TRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSS 62
           T + +S N+L  +P G    L  L+ L L  N+++TLP  L +  PKL  L+L  N L+ 
Sbjct: 103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162

Query: 63  LPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDN 106
           LP G       L+ L L  N+L   ++P  FF    L   +L  N
Sbjct: 163 LPAGLLNGLENLDTLLLQENSL--YTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 61.3 bits (149), Expect = 8e-11
 Identities = 25/115 (21%), Positives = 32/115 (27%), Gaps = 29/115 (25%)

Query: 9   LSHNKLKEIPPGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLPRGF 67
                L  +PP L    +  IL L  N + T    +L    +L  LNL    L+ L    
Sbjct: 17  CDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-- 72

Query: 68  GAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 122
                                      L  L  L L  N  + LP     L  L 
Sbjct: 73  ------------------------DGTLPVLGTLDLSHNQLQSLPLLGQTLPALT 103

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 10/73 (13%)

Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEV 266
           N+L SLP      P L      T+LD+++N L   SLP G    L  L+ LYL  N+ + 
Sbjct: 87  NQLQSLPLLGQTLPAL------TVLDVSFNRL--TSLPLGALRGLGELQELYLKGNELKT 138

Query: 267 LPAEI-GNLKNLQ 278
           LP  +      L+
Sbjct: 139 LPPGLLTPTPKLE 151

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 21/72 (29%), Positives = 25/72 (34%), Gaps = 8/72 (11%)

Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDFEV 266
           N L +LP G     +L        L L  NNL    LP      LE L  L L +N    
Sbjct: 134 NELKTLPPG-----LLTPTPKLEKLSLANNNL--TELPAGLLNGLENLDTLLLQENSLYT 186

Query: 267 LPAEIGNLKNLQ 278
           +P        L 
Sbjct: 187 IPKGFFGSHLLP 198

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 8/71 (11%)

Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL 267
           N L +                 T L+L    L    L      L  L  L L  N  + L
Sbjct: 41  NLLYTFSLA--TLMPYTRL---TQLNLDRAEL--TKLQV-DGTLPVLGTLDLSHNQLQSL 92

Query: 268 PAEIGNLKNLQ 278
           P     L  L 
Sbjct: 93  PLLGQTLPALT 103

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 39.7 bits (93), Expect = 9e-04
 Identities = 21/72 (29%), Positives = 25/72 (34%), Gaps = 10/72 (13%)

Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL 267
             L+ L         L        LDL++N L  QSLP     L  L  L +  N    L
Sbjct: 65  AELTKLQ----VDGTLPVL---GTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLTSL 115

Query: 268 PAEI-GNLKNLQ 278
           P      L  LQ
Sbjct: 116 PLGALRGLGELQ 127

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 93.5 bits (233), Expect = 4e-22
 Identities = 39/125 (31%), Positives = 56/125 (44%), Gaps = 7/125 (5%)

Query: 5   TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSS 62
             + L    L+E+ PG    L  L+ L L +N ++ LP  +   L  L  L L  NR+SS
Sbjct: 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167

Query: 63  LPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEI-GNLK 119
           +P   F     L+ L L  N +    +  + F  L  L  LYL  N+   LP E    L+
Sbjct: 168 VPERAFRGLHSLDRLLLHQNRV--AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225

Query: 120 NLQII 124
            LQ +
Sbjct: 226 ALQYL 230

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 92.7 bits (231), Expect = 9e-22
 Identities = 64/267 (23%), Positives = 90/267 (33%), Gaps = 73/267 (27%)

Query: 4   ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMN-RL 60
             RI L  N++  +P        NL IL L +N +  +   + + L  L  L+L  N +L
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 61  SSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEI-GN 117
            S+    F     L  L L    L  Q L    F  L  L+ LYL DN  + LP +   +
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGL--QELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 118 LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELR 177
           L NL  +        +  NR  I  +   A   GL +L                  + L 
Sbjct: 152 LGNLTHL-------FLHGNR--ISSVPERA-FRGLHSL------------------DRLL 183

Query: 178 EDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILDLTY 236
                                L +N      R++ +    F     L        L L  
Sbjct: 184 ---------------------LHQN------RVAHVHPHAFRDLGRLM------TLYLFA 210

Query: 237 NNLNEQSLPGNFF-MLETLRALYLGDN 262
           NNL   +LP      L  L+ L L DN
Sbjct: 211 NNL--SALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.5 bits (194), Expect = 8e-17
 Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 5/116 (4%)

Query: 10  SHNKLKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPRG-F 67
               L+ +P G+      + + L  N+I  +P  S  +   L IL L  N L+ +    F
Sbjct: 19  PQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF 76

Query: 68  GAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQ 122
               +LE LDL+ N       P  F  L  L  L+L     + L   +   L  LQ
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.2 bits (175), Expect = 3e-14
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 5   TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSS 62
           T + L  N++  +P      L +L+ L L  N++  +   +   L +L  L L  N LS+
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215

Query: 63  LPRG-FGAFPVLEVLDLTYNNLN 84
           LP         L+ L L  N   
Sbjct: 216 LPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 52.3 bits (126), Expect = 5e-08
 Identities = 39/225 (17%), Positives = 60/225 (26%), Gaps = 69/225 (30%)

Query: 58  NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-G 116
             L ++P G       + + L  N ++      +F     L  L+L  N    + A    
Sbjct: 21  QGLQAVPVGI--PAASQRIFLHGNRISHVP-AASFRACRNLTILWLHSNVLARIDAAAFT 77

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
            L  L+ +        +  N   +  +       GL  L                    L
Sbjct: 78  GLALLEQL-------DLSDNA-QLRSVDPAT-FHGLGRL------------------HTL 110

Query: 177 REDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILDLT 235
                                       +    L  L  G F     L+       L L 
Sbjct: 111 H---------------------------LDRCGLQELGPGLFRGLAALQ------YLYLQ 137

Query: 236 YNNLNEQSLPGNFF-MLETLRALYLGDNDFEVLPAEI-GNLKNLQ 278
            N L  Q+LP + F  L  L  L+L  N    +P      L +L 
Sbjct: 138 DNAL--QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 9/75 (12%)

Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEV 266
            +L S+      F  L        L L    L  Q L    F  L  L+ LYL DN  + 
Sbjct: 91  AQLRSVDPA--TFHGLGRL---HTLHLDRCGL--QELGPGLFRGLAALQYLYLQDNALQA 143

Query: 267 LPAEI-GNLKNLQIM 280
           LP +   +L NL  +
Sbjct: 144 LPDDTFRDLGNLTHL 158

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 93.4 bits (233), Expect = 6e-22
 Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 8/129 (6%)

Query: 4   ITRITLSHNKL---KEIPPGLANLVNLEILTLFN-NQIE-TLPTSLSSLPKLRILNLGMN 58
           +  + LS   L     IP  LANL  L  L +   N +   +P +++ L +L  L +   
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 59  RLS-SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIG 116
            +S ++P        L  LD +YN L+  +LP +   L  L  +    N     +P   G
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSG-TLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 117 NLKNLQIIL 125
           +   L   +
Sbjct: 171 SFSKLFTSM 179

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 91.8 bits (229), Expect = 3e-21
 Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 7/125 (5%)

Query: 5   TRITLSHNKLK-EIPPGLANLVNLEILTLFNNQIE-TLPTSLSSLPKLRILNLGMNRLS- 61
             + ++H  +   IP  L+ +  L  L    N +  TLP S+SSLP L  +    NR+S 
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 62  SLPRGFGAFPVL-EVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLK 119
           ++P  +G+F  L   + ++ N L    +P  F  L  L  + L  N  E       G+ K
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTG-KIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDK 221

Query: 120 NLQII 124
           N Q I
Sbjct: 222 NTQKI 226

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 86.8 bits (216), Expect = 1e-19
 Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 8/128 (6%)

Query: 3   YITRITLSH-NKLK-EIPPGLANLVNLEILTLFNNQIE-TLPTSLSSLPKLRILNLGMNR 59
           Y+  + +   N L   IPP +A L  L  L + +  +   +P  LS +  L  L+   N 
Sbjct: 77  YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA 136

Query: 60  LS-SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETL-RALYLGDNDFE-VLPAEIG 116
           LS +LP    + P L  +    N ++  ++P ++     L  ++ +  N     +P    
Sbjct: 137 LSGTLPPSISSLPNLVGITFDGNRISG-AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195

Query: 117 NLKNLQII 124
           NL NL  +
Sbjct: 196 NL-NLAFV 202

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 83.4 bits (207), Expect = 2e-18
 Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 8/125 (6%)

Query: 5   TRITLSHNKLK-EIPPGLANLVNLEILTLFNNQIE-TLPTSLSSLPKL-RILNLGMNRLS 61
             +  S+N L   +PP +++L NL  +T   N+I   +P S  S  KL   + +  NRL+
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187

Query: 62  -SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLK 119
             +P  F     L  +DL+ N L E      F   +  + ++L  N     L  ++G  K
Sbjct: 188 GKIPPTFANLN-LAFVDLSRNML-EGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSK 244

Query: 120 NLQII 124
           NL  +
Sbjct: 245 NLNGL 249

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 79.1 bits (196), Expect = 7e-17
 Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 8/125 (6%)

Query: 5   TRITLSHNKLK-EIPPGLANLVNL-EILTLFNNQIE-TLPTSLSSLPKLRILNLGMNRLS 61
             IT   N++   IP    +   L   +T+  N++   +P + ++L  L  ++L  N L 
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLE 210

Query: 62  -SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLK 119
                 FG+    + + L  N+L    L     + + L  L L +N     LP  +  LK
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAF-DLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268

Query: 120 NLQII 124
            L  +
Sbjct: 269 FLHSL 273

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 76.8 bits (190), Expect = 5e-16
 Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 7/114 (6%)

Query: 17  IPPGLANLVNLEILTLFNNQIE---TLPTSLSSLPKLRILNL-GMNRLS-SLPRGFGAFP 71
           +         +  L L    +     +P+SL++LP L  L + G+N L   +P       
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101

Query: 72  VLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQII 124
            L  L +T+ N++  ++P     ++TL  L    N     LP  I +L NL  I
Sbjct: 102 QLHYLYITHTNVSG-AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 75.3 bits (186), Expect = 2e-15
 Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 8/125 (6%)

Query: 4   ITRITLSHNKLK-EIPPGLANLVNLEILTLFNNQIE-TLPTSLSSLPKLRILNLGMNRLS 61
            T +T+S N+L  +IPP  ANL NL  + L  N +E        S    + ++L  N L+
Sbjct: 176 FTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234

Query: 62  -SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLK 119
             L +  G    L  LDL  N +   +LP     L+ L +L +  N+    +P + GNL+
Sbjct: 235 FDLGK-VGLSKNLNGLDLRNNRIYG-TLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQ 291

Query: 120 NLQII 124
              + 
Sbjct: 292 RFDVS 296

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 56.0 bits (136), Expect = 4e-09
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 5/82 (6%)

Query: 4   ITRITLSHNKLK-EIPPGLANLVNLEILTLFNNQIE-TLPTSLSSLPKLRILNLGMNRLS 61
             +I L+ N L  ++   +    NL  L L NN+I  TLP  L+ L  L  LN+  N L 
Sbjct: 223 TQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 62  -SLPRGFGAFPVLEVLDLTYNN 82
             +P+G G     +V     N 
Sbjct: 282 GEIPQG-GNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 43.7 bits (104), Expect = 5e-05
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 9/75 (12%)

Query: 208 NRLS-SLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE- 265
           NR+S ++P  +G+F  L      T + ++ N L    +P  F  L  L  + L  N  E 
Sbjct: 159 NRISGAIPDSYGSFSKL-----FTSMTISRNRLTG-KIPPTFANL-NLAFVDLSRNMLEG 211

Query: 266 VLPAEIGNLKNLQIM 280
                 G+ KN Q +
Sbjct: 212 DASVLFGSDKNTQKI 226

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.9 bits (102), Expect = 7e-05
 Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 9/76 (11%)

Query: 208 NRLS-SLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE- 265
             +S ++P        L        LD +YN L+  +LP +   L  L  +    N    
Sbjct: 111 TNVSGAIPDFLSQIKTL------VTLDFSYNALSG-TLPPSISSLPNLVGITFDGNRISG 163

Query: 266 VLPAEIGNLKNLQIML 281
            +P   G+   L   +
Sbjct: 164 AIPDSYGSFSKLFTSM 179

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 39.8 bits (94), Expect = 8e-04
 Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 1/54 (1%)

Query: 227 SFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQI 279
            +   L +   N     +P     L  L  LY+   +    +P  +  +K L  
Sbjct: 76  PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 95.2 bits (237), Expect = 1e-21
 Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 4/125 (3%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLP--TSLSSLPKLRILNLGMNRLS 61
           +  + LS N +  +      L  LE L   ++ ++ +   +   SL  L  L++      
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 62  SLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLK 119
               G F     LEVL +  N+  E  LP  F  L  L  L L     E L      +L 
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

Query: 120 NLQII 124
           +LQ++
Sbjct: 495 SLQVL 499

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 94.4 bits (235), Expect = 2e-21
 Identities = 57/289 (19%), Positives = 107/289 (37%), Gaps = 29/289 (10%)

Query: 5   TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSS 62
             + LS  +++ I  G   +L +L  L L  N I++L   + S L  L+ L      L+S
Sbjct: 55  QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114

Query: 63  LPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKN 120
           L     G    L+ L++ +N +    LP  F  L  L  L L  N  + +    +  L  
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174

Query: 121 LQIILETFLPDMMEKNRGHIVGIS-------SMAGIVGLPNLVPYCASKFAVRGL--MEA 171
           + ++  +     ++ +   +  I         +  +    N       K  ++GL  +E 
Sbjct: 175 MPLLNLS-----LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229

Query: 172 LAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTI 231
               L E      ++           GLC N  I+  RL+ L      +       F  +
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSAL---EGLC-NLTIEEFRLAYLD----YYLDDIIDLFNCL 281

Query: 232 LDLTYNNLNEQSLPG--NFFMLETLRALYLGDNDFEVLPA-EIGNLKNL 277
            +++  +L   ++    +F      + L L +  F   P  ++ +LK L
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL 330

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 94.4 bits (235), Expect = 2e-21
 Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 8/127 (6%)

Query: 4   ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLS 61
              + LS N L+ +      +   L++L L   +I+T+   +  SL  L  L L  N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 62  SLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVL--PAEIGN 117
           SL  G F     L+ L     NL   SL       L+TL+ L +  N  +    P    N
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNL--ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 118 LKNLQII 124
           L NL+ +
Sbjct: 148 LTNLEHL 154

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 94.0 bits (234), Expect = 3e-21
 Identities = 48/278 (17%), Positives = 81/278 (29%), Gaps = 67/278 (24%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
           ++  +L    ++ +    +     + L L N +    PT    L  L+ L    N+  + 
Sbjct: 284 VSSFSLVSVTIERVKDF-SYNFGWQHLELVNCKFGQFPTL--KLKSLKRLTFTSNKGGNA 340

Query: 64  PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEIGNLKNLQ 122
                  P LE LDL+ N L+ +           +L+ L L  N    + +    L+ L+
Sbjct: 341 FS-EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 399

Query: 123 IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARN 182
            +         + +   +  +S  +  + L NL                    L      
Sbjct: 400 HL-------DFQHSN--LKQMSEFSVFLSLRNL------------------IYLD----- 427

Query: 183 SKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILDLTYNNLNE 241
                                 I          G F     L       +L +  N+  E
Sbjct: 428 ----------------------ISHTHTRVAFNGIFNGLSSL------EVLKMAGNSFQE 459

Query: 242 QSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQ 278
             LP  F  L  L  L L     E L      +L +LQ
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 91.7 bits (228), Expect = 2e-20
 Identities = 50/287 (17%), Positives = 94/287 (32%), Gaps = 25/287 (8%)

Query: 5   TRITLSHNKLKEIPPG--LANLVNLEILTLFNNQIETLP-TSLSSLPKLRI----LNLGM 57
             + ++HN ++        +NL NLE L L +N+I+++  T L  L ++ +    L+L +
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 58  NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA---- 113
           N ++ +  G      L  L L  N  +   +      L  L    L   +F         
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 114 EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALA 173
           +   L+ L  +                     +     L N+  +      +  + +   
Sbjct: 247 DKSALEGLCNLTIEEFRL----AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY 302

Query: 174 EELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILD 233
               +       KF    P +    L K      N+  +        P LE       LD
Sbjct: 303 NFGWQHLELVNCKFGQF-PTLKLKSL-KRLTFTSNKGGNAFS-EVDLPSLE------FLD 353

Query: 234 LTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEIGNLKNLQI 279
           L+ N L+ +           +L+ L L  N    + +    L+ L+ 
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 400

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 85.2 bits (211), Expect = 2e-18
 Identities = 56/278 (20%), Positives = 91/278 (32%), Gaps = 69/278 (24%)

Query: 9   LSHNKLKEIPPGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLPRG- 66
                  +IP  L    + + L L  N +  L   S  S P+L++L+L    + ++  G 
Sbjct: 14  CMELNFYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA 71

Query: 67  FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQII 124
           + +   L  L LT N +  QSL  G F  L +L+ L   + +   L    IG+LK L+ +
Sbjct: 72  YQSLSHLSTLILTGNPI--QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 125 LETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSK 184
                   +  N   I           L NL                  E L        
Sbjct: 130 N-------VAHN--LIQSFKLPEYFSNLTNL------------------EHLD------- 155

Query: 185 IKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILDLTYNNLNEQS 243
                         L  N      ++ S+          +   + +  LDL+ N +    
Sbjct: 156 --------------LSSN------KIQSIYCTDLRVLHQMPLLNLS--LDLSLNPM--NF 191

Query: 244 LPGNFFMLETLRALYLGDN--DFEVLPAEIGNLKNLQI 279
           +    F    L  L L +N     V+   I  L  L++
Sbjct: 192 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 85.2 bits (211), Expect = 2e-18
 Identities = 53/297 (17%), Positives = 87/297 (29%), Gaps = 57/297 (19%)

Query: 9   LSHNKLKEIPPGLANLVNLEILTLFNNQI--ETLPTSLSSLPKLRILNLGMNRLSSLPR- 65
           LS N +  I PG    + L  LTL NN      + T +  L  L +  L +    +    
Sbjct: 184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 66  ---GFGAFPVL-----EVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIG- 116
                 A   L     E   L Y +     +   F  L  + +  L     E +      
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN 303

Query: 117 -NLKNLQI-------ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGL 168
              ++L++            L  +         G ++ +  V LP+L             
Sbjct: 304 FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE-VDLPSL------------- 349

Query: 169 MEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVL 223
                E L  D   + + F                 +K      N + ++   F     L
Sbjct: 350 -----EFL--DLSRNGLSFKGCCSQS----DFGTTSLKYLDLSFNGVITMSSNFLGLEQL 398

Query: 224 EAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQI 279
                   LD  ++NL + S    F  L  L  L +      V    I   L +L++
Sbjct: 399 ------EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 79.0 bits (195), Expect = 2e-16
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 7/105 (6%)

Query: 9   LSHNKLKEIPPG-LANLVNLEILTLFNNQIE--TLPTSLSSLPKLRILNLGMNRLSSLPR 65
           +SH   +    G    L +LE+L +  N  +   LP   + L  L  L+L   +L  L  
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487

Query: 66  G-FGAFPVLEVLDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDF 108
             F +   L+VL++  N L  +S+P   F  L +L+ ++L  N +
Sbjct: 488 TAFNSLSSLQVLNMASNQL--KSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 79.0 bits (195), Expect = 3e-16
 Identities = 50/291 (17%), Positives = 91/291 (31%), Gaps = 31/291 (10%)

Query: 4   ITRITLSHNKLKEIPPG-LANLVNLEI----LTLFNNQIETLPTSLSSLPKLRILNLGMN 58
           +  + LS NK++ I    L  L  + +    L L  N +  +        +L  L L  N
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 210

Query: 59  RLSS--LPRGFGAFPVLEVLDLTYNNL----NEQSLPGNFFMLETLRALYLGDNDFEVLP 112
             S   +         LEV  L         N +    +    E L  L + +     L 
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL--EGLCNLTIEEFRLAYLD 268

Query: 113 AEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEAL 172
             + ++ +L   L       +      I  +   +   G  +L            L    
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVT--IERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS 326

Query: 173 AEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM--NRLSSLPRGFGAFPVLEAFSFTT 230
            + L      +  K  + F  +    L     + +  N LS       +     +     
Sbjct: 327 LKRL----TFTSNKGGNAFSEVDLPSLE---FLDLSRNGLSFKGCCSQSDFGTTS---LK 376

Query: 231 ILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI--GNLKNLQI 279
            LDL++N +   ++  NF  LE L  L    ++ + +       +L+NL  
Sbjct: 377 YLDLSFNGV--ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 68.6 bits (168), Expect = 6e-13
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 4/80 (5%)

Query: 9   LSHNKLKEIPPG--LANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLPR 65
           ++ N  +E         L NL  L L   Q+E L  T+ +SL  L++LN+  N+L S+P 
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511

Query: 66  G-FGAFPVLEVLDLTYNNLN 84
           G F     L+ + L  N  +
Sbjct: 512 GIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 8/76 (10%)

Query: 208 NRLSSLPRG-FGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEV 266
             L+SL     G    L+       L++ +N +    LP  F  L  L  L L  N  + 
Sbjct: 110 TNLASLENFPIGHLKTLK------ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

Query: 267 LPAE-IGNLKNLQIML 281
           +    +  L  + ++ 
Sbjct: 164 IYCTDLRVLHQMPLLN 179

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 93.0 bits (231), Expect = 2e-21
 Identities = 34/126 (26%), Positives = 46/126 (36%), Gaps = 10/126 (7%)

Query: 5   TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSS 62
             + LSHN L  I       + NL  L L +N + TL     S L  L +L L  N +  
Sbjct: 67  HSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV 126

Query: 63  LPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM----LETLRALYLGDNDFEVLPAE-IG 116
           + R  F     L+ L L+ N +     P         L  L  L L  N  + LP   + 
Sbjct: 127 VDRNAFEDMAQLQKLYLSQNQI--SRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQ 184

Query: 117 NLKNLQ 122
            L    
Sbjct: 185 KLPAWV 190

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 92.2 bits (229), Expect = 4e-21
 Identities = 36/128 (28%), Positives = 52/128 (40%), Gaps = 11/128 (8%)

Query: 4   ITRITLSHNKLKEIPPG--LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRL 60
              + LSHN L  +        L NL  L L +N +  + + +   +P LR L+L  N L
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100

Query: 61  SSLPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI--- 115
            +L    F     LEVL L  N++    +    F  +  L+ LYL  N     P E+   
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNHI--VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD 158

Query: 116 -GNLKNLQ 122
              L  L 
Sbjct: 159 GNKLPKLM 166

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 77.2 bits (190), Expect = 5e-16
 Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 9/118 (7%)

Query: 10  SHNKLKEIPPGLANLVNLEILTLFNNQIETLP--TSLSSLPKLRILNLGMNRLSSLPRG- 66
           S  +L  +P  L       +L L +N +  L    + + L  L  L L  N L+ +    
Sbjct: 26  SKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA 83

Query: 67  FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEI-GNLKNLQ 122
           F   P L  LDL+ N+L   +L    F  L+ L  L L +N   V+      ++  LQ
Sbjct: 84  FVPVPNLRYLDLSSNHL--HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQ 139

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.2 bits (120), Expect = 4e-07
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 8/94 (8%)

Query: 34  NNQIETLPTSLSSLPKLRILNLGMNRLSSLPRG--FGAFPVLEVLDLTYNNLNEQSLP-G 90
             Q+  +P SL       +L+L  N LS L           L  L L++N+L    +   
Sbjct: 27  KQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL--NFISSE 82

Query: 91  NFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQI 123
            F  +  LR L L  N    L   +  +L+ L++
Sbjct: 83  AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV 116

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.8 bits (111), Expect = 5e-06
 Identities = 38/227 (16%), Positives = 63/227 (27%), Gaps = 70/227 (30%)

Query: 58  NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-G 116
            +L ++P+         +LDL++NNL+          L  L +L L  N    + +E   
Sbjct: 28  QQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV 85

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
            + NL+ +        +  N   +  +        L  L                  E L
Sbjct: 86  PVPNLRYL-------DLSSNH--LHTLDEFL-FSDLQAL------------------EVL 117

Query: 177 REDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTY 236
                                 L  N       +  + R   AF  +   +    L L+ 
Sbjct: 118 L---------------------LYNNH------IVVVDR--NAFEDM---AQLQKLYLSQ 145

Query: 237 NNLNEQSLPGNFFM----LETLRALYLGDNDFEVLPAE-IGNLKNLQ 278
           N +     P         L  L  L L  N  + LP   +  L    
Sbjct: 146 NQI--SRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWV 190

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 90.1 bits (224), Expect = 2e-21
 Identities = 38/125 (30%), Positives = 54/125 (43%), Gaps = 7/125 (5%)

Query: 5   TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSS 62
           T I L  N +K IPPG  +    L  + L NNQI  L   +   L  L  L L  N+++ 
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 63  LPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI-GNLK 119
           LP+  F     L++L L  N +    L    F  L  L  L L DN  + +       L+
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKI--NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152

Query: 120 NLQII 124
            +Q +
Sbjct: 153 AIQTM 157

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 88.9 bits (221), Expect = 5e-21
 Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 6/106 (5%)

Query: 5   TRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSS 62
            RI LS+N++ E+ P     L +L  L L+ N+I  LP SL   L  L++L L  N+++ 
Sbjct: 59  RRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC 118

Query: 63  LPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDN 106
           L    F     L +L L  N L  Q++  G F  L  ++ ++L  N
Sbjct: 119 LRVDAFQDLHNLNLLSLYDNKL--QTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 78.5 bits (194), Expect = 3e-17
 Identities = 34/117 (29%), Positives = 48/117 (41%), Gaps = 8/117 (6%)

Query: 10  SHNKLKEIPPGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLPRG-F 67
               L EIP  L     +  + L  N I+ +P  + S   KLR ++L  N++S L    F
Sbjct: 19  RGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF 76

Query: 68  GAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQ 122
                L  L L  N +    LP   F  L +L+ L L  N    L  +   +L NL 
Sbjct: 77  QGLRSLNSLVLYGNKI--TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN 131

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 9/73 (12%)

Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEV 266
           N +  +P G  AF   +       +DL+ N +    L    F  L +L +L L  N    
Sbjct: 42  NTIKVIPPG--AFSPYKKL---RRIDLSNNQI--SELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 267 LPAEI-GNLKNLQ 278
           LP  +   L +LQ
Sbjct: 95  LPKSLFEGLFSLQ 107

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 9/73 (12%)

Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEV 266
           N++S L     AF  L +      L L  N +    LP   F  L +L+ L L  N    
Sbjct: 66  NQISELAPD--AFQGLRSL---NSLVLYGNKI--TELPKSLFEGLFSLQLLLLNANKINC 118

Query: 267 LPAEI-GNLKNLQ 278
           L  +   +L NL 
Sbjct: 119 LRVDAFQDLHNLN 131

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 91.2 bits (227), Expect = 2e-21
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 4/124 (3%)

Query: 5   TRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSS 62
             + LS  +++ I  G   +L +L  L L  N I++L     S L  L+ L      L+S
Sbjct: 55  QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114

Query: 63  LPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKN 120
           L     G    L+ L++ +N +    LP  F  L  L  L L  N  + +       L  
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174

Query: 121 LQII 124
           + ++
Sbjct: 175 MPLL 178

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 89.3 bits (222), Expect = 1e-20
 Identities = 34/125 (27%), Positives = 50/125 (40%), Gaps = 8/125 (6%)

Query: 4   ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLS 61
              + LS N L+ +      +   L++L L   +I+T+      SL  L  L L  N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 62  SLPRG-FGAFPVLEVLDLTYNNLNEQSLPGN-FFMLETLRALYLGDNDFEVLPAE--IGN 117
           SL  G F     L+ L     NL   SL       L+TL+ L +  N  +         N
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNL--ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 118 LKNLQ 122
           L NL+
Sbjct: 148 LTNLE 152

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 84.3 bits (209), Expect = 7e-19
 Identities = 28/129 (21%), Positives = 51/129 (39%), Gaps = 11/129 (8%)

Query: 5   TRITLSHNKLKEIPPGLA-NLVNLEILTLFNNQIETLPTS--LSSLPKLRILNLGMNRLS 61
            ++      L  +      +L  L+ L + +N I++       S+L  L  L+L  N++ 
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 62  SLPRG-FGAFPVLEV----LDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI- 115
           S+          + +    LDL+ N +    +    F    L+ L L  N  + +P  I 
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPM--NFIQPGAFKEIRLKELALDTNQLKSVPDGIF 220

Query: 116 GNLKNLQII 124
             L +LQ I
Sbjct: 221 DRLTSLQKI 229

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 79.2 bits (196), Expect = 4e-17
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 8/117 (6%)

Query: 10  SHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRG-F 67
                 +IP  L    + + L L  N +  L   S  S P+L++L+L    + ++  G +
Sbjct: 15  MELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 68  GAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEI-GNLKNLQ 122
            +   L  L LT N +  QSL    F  L +L+ L   + +   L     G+LK L+
Sbjct: 73  QSLSHLSTLILTGNPI--QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 5   TRITLSHNKLKEIPPG-LANLVNLEI----LTLFNNQIETLPTSLSSLPKLRILNLGMNR 59
             + LS NK++ I    L  L  + +    L L  N +  +        +L+ L L  N+
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ 211

Query: 60  LSSLPRG-FGAFPVLEVLDLTYN 81
           L S+P G F     L+ + L  N
Sbjct: 212 LKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 11/74 (14%)

Query: 208 NRLSSLPRG-FGAFPVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFE 265
           N L  L    F +FP L       +LDL+   +  Q++  G +  L  L  L L  N  +
Sbjct: 38  NPLRHLGSYSFFSFPEL------QVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 266 VLPAEI-GNLKNLQ 278
            L       L +LQ
Sbjct: 90  SLALGAFSGLSSLQ 103

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 6/74 (8%)

Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL 267
             L+SL         L+       L++ +N +    LP  F  L  L  L L  N  + +
Sbjct: 110 TNLASLENF--PIGHLKT---LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 268 PAEI-GNLKNLQIM 280
                  L  + ++
Sbjct: 165 YCTDLRVLHQMPLL 178

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 9/73 (12%)

Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEV 266
             + ++  G  A+  L      + L LT N +  QSL    F  L +L+ L   + +   
Sbjct: 62  CEIQTIEDG--AYQSLSH---LSTLILTGNPI--QSLALGAFSGLSSLQKLVAVETNLAS 114

Query: 267 LPAEI-GNLKNLQ 278
           L     G+LK L+
Sbjct: 115 LENFPIGHLKTLK 127

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} Length = 301

 Score = 91.3 bits (227), Expect = 3e-21
 Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 5/78 (6%)

Query: 126 ETFLPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSK 184
           E FLP ++E+   GHI   +S AG+V    L  Y  +K+ V GL E LA E++ +     
Sbjct: 148 EAFLPRLLEQGTGGHIAFTASFAGLVPNAGLGTYGVAKYGVVGLAETLAREVKPN----G 203

Query: 185 IKFTSIFPFMVDTGLCKN 202
           I  + + P +V+T L  N
Sbjct: 204 IGVSVLCPMVVETKLVSN 221

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 93.1 bits (232), Expect = 4e-21
 Identities = 58/279 (20%), Positives = 100/279 (35%), Gaps = 61/279 (21%)

Query: 5   TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP 64
             +  ++N++ +I P L  L NL+ L+L  NQ++ +  +L+SL  L  L+L  N++S+L 
Sbjct: 202 ESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLA 259

Query: 65  RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQII 124
                   L  L L  N ++  S       L  L  L L +N  E +   I NLKNL  +
Sbjct: 260 -PLSGLTKLTELKLGANQISNIS---PLAGLTALTNLELNENQLEDIS-PISNLKNLTYL 314

Query: 125 LETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSK 184
                   +  N      IS ++ +  L  L                  + L     N+K
Sbjct: 315 -------TLYFNN-----ISDISPVSSLTKL------------------QRL--FFYNNK 342

Query: 185 IKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNL 239
           +  + +      + L     I       N++S L         +      T L L     
Sbjct: 343 V--SDV------SSLANLTNINWLSAGHNQISDLT-PLANLTRI------TQLGLNDQAW 387

Query: 240 NEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 278
              + P N+    ++           + PA I +  +  
Sbjct: 388 T--NAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYT 424

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 90.8 bits (226), Expect = 2e-20
 Identities = 55/281 (19%), Positives = 94/281 (33%), Gaps = 64/281 (22%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
           +T +      +K I  G+  L NL  +   NNQ+  +   L +L KL  + +  N+++ +
Sbjct: 48  VTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI 105

Query: 64  PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
                    L  L L  N + +         L  L  L L  N    + A +  L +LQ 
Sbjct: 106 T-PLANLTNLTGLTLFNNQITDID---PLKNLTNLNRLELSSNTISDISA-LSGLTSLQQ 160

Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNS 183
           +           N+     ++ +  +  L  L                  E L  D  ++
Sbjct: 161 L---SF-----GNQ-----VTDLKPLANLTTL------------------ERL--DISSN 187

Query: 184 KIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFTTILDLTYNN 238
           K+  + I      + L K   ++      N++S +    G    L+       L L  N 
Sbjct: 188 KV--SDI------SVLAKLTNLESLIATNNQISDIT-PLGILTNLD------ELSLNGNQ 232

Query: 239 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
           L +    G    L  L  L L +N    L   +  L  L  
Sbjct: 233 LKD---IGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTE 269

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 85.8 bits (213), Expect = 1e-18
 Identities = 55/275 (20%), Positives = 95/275 (34%), Gaps = 50/275 (18%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
           +  ++L+ N+LK+I   LA+L NL  L L NNQI  L   LS L KL  L LG N++S++
Sbjct: 223 LDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNI 280

Query: 64  PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
                    L  L+L  N L + S       L+ L  L L  N+   +   + +L  LQ 
Sbjct: 281 S-PLAGLTALTNLELNENQLEDIS---PISNLKNLTYLTLYFNNISDIS-PVSSLTKLQR 335

Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNS 183
           +           N+     +S ++ +  L N+                    L   A ++
Sbjct: 336 L-------FFYNNK-----VSDVSSLANLTNI------------------NWL--SAGHN 363

Query: 184 KIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQS 243
           +I  + + P    T +     +     ++ P        +   +  +I +   N      
Sbjct: 364 QI--SDLTPLANLTRI-TQLGLNDQAWTNAP--------VNYKANVSIPNTVKNVTGALI 412

Query: 244 LPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 278
            P       +     +  N                
Sbjct: 413 APATISDGGSYTEPDITWNLPSYTNEVSYTFSQPV 447

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 79.6 bits (197), Expect = 1e-16
 Identities = 42/275 (15%), Positives = 85/275 (30%), Gaps = 62/275 (22%)

Query: 9   LSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFG 68
                + +I      L       L    +     S + L ++  L      + S+  G  
Sbjct: 9   TQDTPINQIFT-DTALAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSID-GVE 65

Query: 69  AFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETF 128
               L  ++ + N L + +       L  L  + + +N    +   + NL NL  +    
Sbjct: 66  YLNNLTQINFSNNQLTDIT---PLKNLTKLVDILMNNNQIADITP-LANLTNLTGL---- 117

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
               +  N+     I+ +  +  L NL                    L  +  ++ I  +
Sbjct: 118 ---TLFNNQ-----ITDIDPLKNLTNL------------------NRL--ELSSNTI--S 147

Query: 189 SIFPFMVDTGLCKNPKIKM----NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSL 244
            I      + L     ++     N+++ L         LE       LD++ N +++   
Sbjct: 148 DI------SALSGLTSLQQLSFGNQVTDLK-PLANLTTLE------RLDISSNKVSD--- 191

Query: 245 PGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
                 L  L +L   +N    +   +G L NL  
Sbjct: 192 ISVLAKLTNLESLIATNNQISDITP-LGILTNLDE 225

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 69.2 bits (170), Expect = 4e-13
 Identities = 22/123 (17%), Positives = 43/123 (34%), Gaps = 4/123 (3%)

Query: 5   TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP 64
            R+   +NK+ ++   LANL N+  L+  +NQI  L   L++L ++  L L     ++ P
Sbjct: 334 QRLFFYNNKVSDVSS-LANLTNINWLSAGHNQISDLT-PLANLTRITQLGLNDQAWTNAP 391

Query: 65  RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQII 124
             +     + + +   N       P       +     +  N                 I
Sbjct: 392 VNY--KANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTI 449

Query: 125 LET 127
            + 
Sbjct: 450 GKG 452

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 10/81 (12%), Positives = 21/81 (25%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
           IT++ L+       P      V++             P ++S        ++  N  S  
Sbjct: 377 ITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYT 436

Query: 64  PRGFGAFPVLEVLDLTYNNLN 84
                 F     +       +
Sbjct: 437 NEVSYTFSQPVTIGKGTTTFS 457

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 89.3 bits (222), Expect = 1e-20
 Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 7/125 (5%)

Query: 5   TRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSS 62
             + ++ NKL+ +P G+   LVNL  L L  NQ+++LP  +  SL KL  L+LG N L S
Sbjct: 88  ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS 147

Query: 63  LPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDFEVLPAEI-GNLK 119
           LP+G F     L+ L L  N L  + +P   F  L  L+ L L +N  + +P     +L+
Sbjct: 148 LPKGVFDKLTSLKELRLYNNQL--KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE 205

Query: 120 NLQII 124
            L+++
Sbjct: 206 KLKML 210

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 85.8 bits (213), Expect = 2e-19
 Identities = 43/124 (34%), Positives = 62/124 (50%), Gaps = 7/124 (5%)

Query: 5   TRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSS 62
             + L+ NKL+ +P G+   L NLE L + +N+++ LP  +   L  L  L L  N+L S
Sbjct: 64  RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS 123

Query: 63  LPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDFEVLPAEI-GNLK 119
           LP   F +   L  L L YN L  QSLP   F  L +L+ L L +N  + +P      L 
Sbjct: 124 LPPRVFDSLTKLTYLSLGYNEL--QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT 181

Query: 120 NLQI 123
            L+ 
Sbjct: 182 ELKT 185

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 84.6 bits (210), Expect = 5e-19
 Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 7/125 (5%)

Query: 5   TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSS 62
            ++ L  NKL  +P      L  L +L L +N+++TLP  +   L  L  L +  N+L +
Sbjct: 40  KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99

Query: 63  LPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI-GNLK 119
           LP G F     L  L L  N L  +SLP   F  L  L  L LG N+ + LP  +   L 
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQL--KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157

Query: 120 NLQII 124
           +L+ +
Sbjct: 158 SLKEL 162

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 75.8 bits (187), Expect = 5e-16
 Identities = 41/117 (35%), Positives = 57/117 (48%), Gaps = 8/117 (6%)

Query: 10  SHNKLKEIPPGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLPRG-F 67
           S  KL  IP  +    + + L L +N++ +LP  +   L KLR+L L  N+L +LP G F
Sbjct: 24  SSKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF 81

Query: 68  GAFPVLEVLDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDFEVLPAEI-GNLKNLQ 122
                LE L +T N L  Q+LP   F  L  L  L L  N  + LP  +  +L  L 
Sbjct: 82  KELKNLETLWVTDNKL--QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT 136

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 9/73 (12%)

Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEV 266
           N+L +LP G   F  L        L L  N L  +SLP   F  L  L  L LG N+ + 
Sbjct: 95  NKLQALPIG--VFDQLVN---LAELRLDRNQL--KSLPPRVFDSLTKLTYLSLGYNELQS 147

Query: 267 LPAEI-GNLKNLQ 278
           LP  +   L +L+
Sbjct: 148 LPKGVFDKLTSLK 160

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 9/73 (12%)

Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDFEV 266
           N+L +LP G   F  L+       L +T N L  Q+LP   F  L  L  L L  N  + 
Sbjct: 71  NKLQTLPAG--IFKELKN---LETLWVTDNKL--QALPIGVFDQLVNLAELRLDRNQLKS 123

Query: 267 LPAEI-GNLKNLQ 278
           LP  +  +L  L 
Sbjct: 124 LPPRVFDSLTKLT 136

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 9/74 (12%)

Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDFEV 266
           N+L SLP     F  L      T L L YN L  QSLP   F  L +L+ L L +N  + 
Sbjct: 119 NQLKSLPPR--VFDSLTK---LTYLSLGYNEL--QSLPKGVFDKLTSLKELRLYNNQLKR 171

Query: 267 LPAEI-GNLKNLQI 279
           +P      L  L+ 
Sbjct: 172 VPEGAFDKLTELKT 185

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 12/73 (16%)

Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEV 266
            +L+++P            + T  LDL  N L   SLP   F  L  LR LYL DN  + 
Sbjct: 26  KKLTAIPSNI--------PADTKKLDLQSNKL--SSLPSKAFHRLTKLRLLYLNDNKLQT 75

Query: 267 LPAEI-GNLKNLQ 278
           LPA I   LKNL+
Sbjct: 76  LPAGIFKELKNLE 88

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} Length = 234

 Score = 88.0 bits (219), Expect = 1e-20
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 4/83 (4%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           NL    + +   +P ++ +  G IV + S+AG         Y ASKF + GL  A   +L
Sbjct: 109 NLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKNPFKGGAAYNASKFGLLGLAGAAMLDL 168

Query: 177 REDARNSKIKFTSIFPFMVDTGL 199
           RE      ++  ++ P  VDTG 
Sbjct: 169 REA----NVRVVNVLPGSVDTGF 187

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} Length = 250

 Score = 88.4 bits (220), Expect = 2e-20
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           N+     IL+T    M  +  G+I  ++S A   G  +   Y ++KFA+ GL E+L  EL
Sbjct: 117 NVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGFADGGIYGSTKFALLGLAESLYREL 176

Query: 177 REDARNSKIKFTSIFPFMVDTGL 199
                   I+ T++ P  V+T +
Sbjct: 177 AP----LGIRVTTLCPGWVNTDM 195

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} Length = 235

 Score = 88.0 bits (219), Expect = 2e-20
 Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
           +  ++ +  G +  + S A  VG  N   YCASK+ +RG +E+L  EL++      ++  
Sbjct: 120 VR-LIGERGGVLANVLSSAAQVGKANESLYCASKWGMRGFLESLRAELKDS----PLRLV 174

Query: 189 SIFPFMVDTGL 199
           +++P  + +  
Sbjct: 175 NLYPSGIRSEF 185

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 90.7 bits (225), Expect = 3e-20
 Identities = 46/286 (16%), Positives = 101/286 (35%), Gaps = 12/286 (4%)

Query: 4   ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTS-LSSLPKLRILNLGMNRLS 61
            T + +S N + E+    + +L  L IL + +N+I+ L  S      +L  L+L  N+L 
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82

Query: 62  SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKN 120
            +         L+ LDL++N  +   +   F  +  L+ L L     E      I +L  
Sbjct: 83  KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNI 140

Query: 121 LQIILETFLPDMMEKNRGHIVGIS-SMAGIVGLPNLVPYCASKFAVRGLMEALAEELRED 179
            +++L        +++   +   +     IV   N   +     +V+ +       ++  
Sbjct: 141 SKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV 200

Query: 180 ARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNL 239
             ++K  +       + T    +  + +N + +    F     L   +      ++   L
Sbjct: 201 LEDNKCSYFLSILAKLQTNPKLS-NLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKL 259

Query: 240 NE----QSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQIM 280
                 +    +   L+ L    +  + F    + I     N+ I 
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 82.6 bits (204), Expect = 1e-17
 Identities = 38/157 (24%), Positives = 60/157 (38%), Gaps = 23/157 (14%)

Query: 5   TRITLSHNKLKEIPPG---LANLVNLEILTLFNNQIETLPT--SLSSLPKLRILNLGMNR 59
             + L  N+LKE+         + +L+ L +  N +         S    L  LN+  N 
Sbjct: 351 ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410

Query: 60  LSSLPRGFGAFPV-LEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GN 117
           L+     F   P  ++VLDL  N +  +S+P     LE L+ L +  N  + +P  I   
Sbjct: 411 LTDTI--FRCLPPRIKVLDLHSNKI--KSIPKQVVKLEALQELNVASNQLKSVPDGIFDR 466

Query: 118 LKNLQII------------LETFLPDMMEKNRGHIVG 142
           L +LQ I               +L   + KN     G
Sbjct: 467 LTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG 503

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 74.1 bits (182), Expect = 1e-14
 Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 5/114 (4%)

Query: 4   ITRITLSHNKLKEIPPGLAN-LVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLS 61
           +     + +  + +     + +     L   NN +      +   L +L  L L MN+L 
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

Query: 62  SLPRGFGAF---PVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP 112
            L +          L+ LD++ N+++     G+    ++L +L +  N      
Sbjct: 362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI 415

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 69.1 bits (169), Expect = 4e-13
 Identities = 48/294 (16%), Positives = 96/294 (32%), Gaps = 64/294 (21%)

Query: 2   LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQI------ETLPTSLSSLPKLRILNL 55
           L +  I  + N    I   L     +   ++ N ++           S +SL  L I  +
Sbjct: 225 LTLNNIETTWNSFIRILQ-LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQV 283

Query: 56  GMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDFEVLPA 113
             +         +  F  + + + T +    + +       +     L   +N       
Sbjct: 284 VSDVFGFPQSYIYEIFSNMNIKNFTVSGT--RMVHMLCPSKISPFLHLDFSNNLLTDTVF 341

Query: 114 EI-GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIV-GLPNLVPYCASKFAVRGLMEA 171
           E  G+L  L+ +       +++ N+  +  +S +A +   + +L                
Sbjct: 342 ENCGHLTELETL-------ILQMNQ--LKELSKIAEMTTQMKSL---------------- 376

Query: 172 LAEELREDARNSKIKFTSIFPFMVDTGLCKNPK------IKMNRLSSLPRGFGAFPVLEA 225
             ++L  D   + + +          G C   K      +  N L+     F   P    
Sbjct: 377 --QQL--DISQNSVSYDE------KKGDCSWTKSLLSLNMSSNILTDTI--FRCLPPR-- 422

Query: 226 FSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQ 278
                +LDL  N +  +S+P     LE L+ L +  N  + +P  I   L +LQ
Sbjct: 423 ---IKVLDLHSNKI--KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQ 471

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 65.3 bits (159), Expect = 8e-12
 Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
           +  + +S N L +          +++L L +N+I+++P  +  L  L+ LN+  N+L S+
Sbjct: 401 LLSLNMSSNILTDTIFR-CLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSV 459

Query: 64  PRG-FGAFPVLEVLDLTYNNLN 84
           P G F     L+ + L  N  +
Sbjct: 460 PDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.0 bits (153), Expect = 4e-11
 Identities = 41/291 (14%), Positives = 72/291 (24%), Gaps = 21/291 (7%)

Query: 5   TRITLSHNKLKEIPPG--LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSS 62
             + LS N    +P      N+  L+ L L    +E       +   +  + L +     
Sbjct: 93  KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYG 152

Query: 63  LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEIGNLKNL 121
                          L       +       + ++T+  L L +    +   +     ++
Sbjct: 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI 212

Query: 122 QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDAR 181
              L+T                +S   I+ L           +   L   L     + + 
Sbjct: 213 LAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG 272

Query: 182 NS---------KIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTIL 232
            S                    +      N  IK   +S               S    L
Sbjct: 273 TSLKALSIHQVVSDVFGFPQSYIYEIF-SNMNIKNFTVSGTR--MVHMLCPSKISPFLHL 329

Query: 233 DLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEIG---NLKNLQI 279
           D + N L        N   L  L  L L  N  + L         +K+LQ 
Sbjct: 330 DFSNNLL--TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ 378

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 89.6 bits (222), Expect = 6e-20
 Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 14/124 (11%)

Query: 5   TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP 64
             +    N+L  +P   A+L +L+   + NNQ+  LP   + L     +N   N+L+ LP
Sbjct: 103 EYLDACDNRLSTLPELPASLKHLD---VDNNQLTMLPELPALL---EYINADNNQLTMLP 156

Query: 65  RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQII 124
               +   LEVL +  N L    LP    + E+L AL +  N  E LPA      + +  
Sbjct: 157 ELPTS---LEVLSVRNNQLTF--LPE---LPESLEALDVSTNLLESLPAVPVRNHHSEET 208

Query: 125 LETF 128
              F
Sbjct: 209 EIFF 212

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 88.9 bits (220), Expect = 1e-19
 Identities = 54/296 (18%), Positives = 88/296 (29%), Gaps = 83/296 (28%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
            + + L+   L  +P  L     + +L +  N + +LP   +S   L  L+   NRLS+L
Sbjct: 61  FSELQLNRLNLSSLPDNLPP--QITVLEITQNALISLPELPAS---LEYLDACDNRLSTL 115

Query: 64  PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL-- 121
           P    +   L+ LD+  N L    LP        L  +   +N   +LP    +L+ L  
Sbjct: 116 PELPAS---LKHLDVDNNQL--TMLPEL---PALLEYINADNNQLTMLPELPTSLEVLSV 167

Query: 122 ---QIILETFLPDMMEK--------NRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLME 170
              Q+   TFLP++ E         N            +  LP +              E
Sbjct: 168 RNNQL---TFLPELPESLEALDVSTNL-----------LESLPAVPVRNHH-------SE 206

Query: 171 ALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTT 230
                     R                          NR++ +P    +           
Sbjct: 207 ETEIFF--RCRE-------------------------NRITHIPENILSLDPTCT----- 234

Query: 231 ILDLTYNNLNEQSLPGNFFMLETLRALYLG-DNDFEVLPAEIGNLKNLQIMLEPRW 285
            + L  N L   S        +T +  Y G    F +   +   L          W
Sbjct: 235 -IILEDNPL--SSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAW 287

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 81.6 bits (201), Expect = 4e-17
 Identities = 29/118 (24%), Positives = 43/118 (36%), Gaps = 10/118 (8%)

Query: 9   LSHNKLKEIPPGL-ANLVNLEILTLFNNQIETLPTSL--SSLPKLRILNLGMNRLSSLPR 65
             +N +        +     E   L         + L    + +   L L    LSSLP 
Sbjct: 17  SFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPD 76

Query: 66  GFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
                P + VL++T N L   SLP    +  +L  L   DN    LP    +LK+L +
Sbjct: 77  NLP--PQITVLEITQNAL--ISLPE---LPASLEYLDACDNRLSTLPELPASLKHLDV 127

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 60.0 bits (145), Expect = 4e-10
 Identities = 23/105 (21%), Positives = 30/105 (28%), Gaps = 10/105 (9%)

Query: 23  NLVNLEILTLFNNQIETLPTSL----SSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDL 78
           N  +L     F N I               K  +     N   SL +          L L
Sbjct: 9   NNFSLSQN-SFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE-CLINQFSELQL 66

Query: 79  TYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
              NL   SLP N      +  L +  N    LP    +L+ L  
Sbjct: 67  NRLNL--SSLPDNLP--PQITVLEITQNALISLPELPASLEYLDA 107

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 85.9 bits (213), Expect = 7e-20
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 6/106 (5%)

Query: 5   TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSS 62
            +I  S+NK+ +I  G       +  + L +N++E +   +   L  L+ L L  NR++ 
Sbjct: 60  RKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC 119

Query: 63  LPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDN 106
           +    F     + +L L  N +   ++  G F  L +L  L L  N
Sbjct: 120 VGNDSFIGLSSVRLLSLYDNQI--TTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 84.3 bits (209), Expect = 3e-19
 Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 8/126 (6%)

Query: 5   TRITLSHNKLKEIPP--GLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLS 61
             + L++N+   +        L  L  +   NN+I  +   +      +  + L  NRL 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 62  SLPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI-GNL 118
           ++    F     L+ L L  N +    +   +F  L ++R L L DN    +       L
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRI--TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152

Query: 119 KNLQII 124
            +L  +
Sbjct: 153 HSLSTL 158

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 72.4 bits (178), Expect = 5e-15
 Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 9/119 (7%)

Query: 10  SHNKLKEIPPGLANLVNLEILTLFNNQIETLPTS--LSSLPKLRILNLGMNRLSSLPRG- 66
           S+ KL +IP  +        L L NN+   L  +     LP+LR +N   N+++ +  G 
Sbjct: 19  SNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA 76

Query: 67  FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQI 123
           F     +  + LT N L  +++    F  LE+L+ L L  N    +  +    L ++++
Sbjct: 77  FEGASGVNEILLTSNRL--ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRL 133

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 11/98 (11%)

Query: 186 KFTSIFPFMVDTGLCKNPKIKM--NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQS 243
           +FT +    +   L +  KI    N+++ +  G  AF           + LT N L  ++
Sbjct: 43  EFTVLEATGIFKKLPQLRKINFSNNKITDIEEG--AFEGASGV---NEILLTSNRL--EN 95

Query: 244 LP-GNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQI 279
           +    F  LE+L+ L L  N    +  +    L ++++
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRL 133

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 89.8 bits (222), Expect = 7e-20
 Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 6/126 (4%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
           +  + L+H  L  +   L  L+ +  L L +N++  LP +L++L  L +L    N L ++
Sbjct: 443 VRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 501

Query: 64  PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLK---- 119
             G    P L+ L L  N L + +          L  L L  N           L     
Sbjct: 502 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 560

Query: 120 NLQIIL 125
           ++  IL
Sbjct: 561 SVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.5 bits (146), Expect = 2e-10
 Identities = 32/158 (20%), Positives = 60/158 (37%), Gaps = 17/158 (10%)

Query: 1   MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETL---PTSLSSLPKLRILNLGM 57
           M  +  +      L+     L  +  +    L + + + L            +R+L+L  
Sbjct: 392 MRALDPLLYEKETLQYFS-TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAH 450

Query: 58  NRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGN 117
             L+ L        ++  LDL++N L  ++LP     L  L  L   DN  E +   + N
Sbjct: 451 KDLTVLC-HLEQLLLVTHLDLSHNRL--RALPPALAALRCLEVLQASDNALENVD-GVAN 506

Query: 118 LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNL 155
           L  LQ +       ++  NR  +   +++  +V  P L
Sbjct: 507 LPRLQEL-------LLCNNR--LQQSAAIQPLVSCPRL 535

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.0 bits (116), Expect = 1e-06
 Identities = 37/209 (17%), Positives = 64/209 (30%), Gaps = 32/209 (15%)

Query: 77  DLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETF------LP 130
           +        +    +    E L    L      VL +E+ + K LQ +          + 
Sbjct: 330 ECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTII 389

Query: 131 DMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSI 190
            +M      +    ++     L  + P              +     +D R+  +   S+
Sbjct: 390 LLMRALDPLLYEKETLQYFSTLKAVDP--------------MRAAYLDDLRSKFLLENSV 435

Query: 191 FPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFM 250
                      +  +    L+ L         LE     T LDL++N L  ++LP     
Sbjct: 436 LKMEYADVRVLH--LAHKDLTVLCH-------LEQLLLVTHLDLSHNRL--RALPPALAA 484

Query: 251 LETLRALYLGDNDFEVLPAEIGNLKNLQI 279
           L  L  L   DN  E +   + NL  LQ 
Sbjct: 485 LRCLEVLQASDNALENVD-GVANLPRLQE 512

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.7 bits (105), Expect = 3e-05
 Identities = 30/266 (11%), Positives = 71/266 (26%), Gaps = 48/266 (18%)

Query: 26  NLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLD-------- 77
           + +   L  ++ E      ++  +L    L + + + L     +   L+ L+        
Sbjct: 327 SQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLL 386

Query: 78  -LTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKN 136
            +         L      L+    L   D        ++ +   L+  +       +   
Sbjct: 387 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVL 446

Query: 137 RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD 196
                 ++ +  +  L  +                    L  D  +++++        + 
Sbjct: 447 HLAHKDLTVLCHLEQLLLV------------------THL--DLSHNRLR-------ALP 479

Query: 197 TGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFML 251
             L     +++     N L ++  G    P L+       L L  N L + +        
Sbjct: 480 PALAALRCLEVLQASDNALENVD-GVANLPRLQ------ELLLCNNRLQQSAAIQPLVSC 532

Query: 252 ETLRALYLGDNDFEVLPAEIGNLKNL 277
             L  L L  N           L  +
Sbjct: 533 PRLVLLNLQGNSLCQEEGIQERLAEM 558

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} Length = 245

 Score = 84.5 bits (210), Expect = 3e-19
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           N+     +    LP  +    G ++ I+S AG    P    Y ASK A+RGL +A  +E 
Sbjct: 106 NVIVPAELSRQLLP-ALRAASGCVIYINSGAGNGPHPGNTIYAASKHALRGLADAFRKEE 164

Query: 177 REDARNSKIKFTSIFPFMVDTGL 199
             +     I+ +++ P   +T +
Sbjct: 165 ANN----GIRVSTVSPGPTNTPM 183

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 Length = 244

 Score = 84.2 bits (209), Expect = 5e-19
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 4/83 (4%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           NLK    + +     M  ++ GHI  I+S+A      +   YC SKF  RGL+E +    
Sbjct: 117 NLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFRHSSIYCMSKFGQRGLVETMRLYA 176

Query: 177 REDARNSKIKFTSIFPFMVDTGL 199
           R+   N  ++ T + P  V T +
Sbjct: 177 RK--CN--VRITDVQPGAVYTPM 195

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} Length = 266

 Score = 83.4 bits (207), Expect = 1e-18
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           N+  L   ++  L  M  +N G I+ ISS+AG    P+   YC +KFAV  + E     +
Sbjct: 118 NVLGLLNGMQAVLAPMKARNCGTIINISSIAGKKTFPDHAAYCGTKFAVHAISEN----V 173

Query: 177 REDARNSKIKFTSIFPFMVDTGL 199
           RE+   S ++  +I P  V T L
Sbjct: 174 REEVAASNVRVMTIAPSAVKTEL 196

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} Length = 264

 Score = 83.0 bits (206), Expect = 2e-18
 Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 6/83 (7%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           N+K +   +   LP M  +  G I+ I S+  +  +P    YCA+KFAVR + +     L
Sbjct: 112 NIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALSVVPTAAVYCATKFAVRAISDG----L 167

Query: 177 REDARNSKIKFTSIFPFMVDTGL 199
           R+++ N  I+ T + P +V++ L
Sbjct: 168 RQESTN--IRVTCVNPGVVESEL 188

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 83.6 bits (207), Expect = 2e-18
 Identities = 37/152 (24%), Positives = 60/152 (39%), Gaps = 19/152 (12%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
           IT ++     +  I  G+  L NL  L L +NQI  L   L +L K+  L L  N L ++
Sbjct: 43  ITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNV 100

Query: 64  PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
                    ++ LDLT   + + +       L  L+ LYL  N    +   +  L NLQ 
Sbjct: 101 S-AIAGLQSIKTLDLTSTQITDVT---PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQY 155

Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNL 155
           +        +   +     +S +  +  L  L
Sbjct: 156 L-------SIGNAQ-----VSDLTPLANLSKL 175

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 74.3 bits (183), Expect = 3e-15
 Identities = 46/276 (16%), Positives = 90/276 (32%), Gaps = 75/276 (27%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
             +I    + + +     A+L  +  L+ F   + T+   +  L  L  L L  N+++ L
Sbjct: 21  AIKIAAGKSNVTDTVT-QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDL 78

Query: 64  PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
                    +  L+L+ N L   S       L++++ L L       +   +  L NLQ+
Sbjct: 79  A-PLKNLTKITELELSGNPLKNVS---AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQV 133

Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNS 183
           +        ++ N+     I++++ + GL NL                  + L       
Sbjct: 134 L-------YLDLNQ-----ITNISPLAGLTNL------------------QYLS------ 157

Query: 184 KIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQS 243
                                I   ++S L         L        L    N +++ S
Sbjct: 158 ---------------------IGNAQVSDLT-PLANLSKLT------TLKADDNKISDIS 189

Query: 244 LPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
              +   L  L  ++L +N    +   + N  NL I
Sbjct: 190 PLAS---LPNLIEVHLKNNQISDVSP-LANTSNLFI 221

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.0 bits (177), Expect = 2e-14
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 6/122 (4%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
           +  + L  N++  I P LA L NL+ L++ N Q+  L   L++L KL  L    N++S +
Sbjct: 131 LQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDI 188

Query: 64  PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
                + P L  + L  N +++ S          L  + L +      P    N   +  
Sbjct: 189 S-PLASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTNQTITNQPVFYNNNLVVPN 244

Query: 124 IL 125
           ++
Sbjct: 245 VV 246

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.4 bits (165), Expect = 6e-13
 Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
           +  +++ + ++ ++ P LANL  L  L   +N+I  +   L+SLP L  ++L  N++S +
Sbjct: 153 LQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDV 210

Query: 64  PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 122
                    L ++ LT   +   + P  +     +  +  G +   + PA I +     
Sbjct: 211 S-PLANTSNLFIVTLTNQTI--TNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYA 266

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 85.2 bits (210), Expect = 3e-18
 Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 19/152 (12%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
           I +I  +++ +K +  G+  L N+  L L  N++  +   L++L  L  L L  N++  L
Sbjct: 45  IDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKDL 102

Query: 64  PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
                    L+ L L +N +++ +       L  L +LYLG+N    +   +  L  L  
Sbjct: 103 S-SLKDLKKLKSLSLEHNGISDIN---GLVHLPQLESLYLGNNKITDITV-LSRLTKLDT 157

Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNL 155
           +        +E N+     IS +  + GL  L
Sbjct: 158 L-------SLEDNQ-----ISDIVPLAGLTKL 177

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 82.1 bits (202), Expect = 3e-17
 Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 7/120 (5%)

Query: 5   TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP 64
             + L  NK+K++   L +L  L+ L+L +N I  +   L  LP+L  L LG N+++ + 
Sbjct: 90  GWLFLDENKIKDLSS-LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDIT 147

Query: 65  RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQII 124
                   L+ L L  N +++         L  L+ LYL  N    L   +  LKNL ++
Sbjct: 148 -VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVL 202

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 81.7 bits (201), Expect = 4e-17
 Identities = 42/278 (15%), Positives = 91/278 (32%), Gaps = 52/278 (18%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
             +  L    + +       L +++ +   N+ I+++   +  LP +  L L  N+L+ +
Sbjct: 23  TIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDI 80

Query: 64  PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
                    L  L L  N + + S   +   L+ L++L L  N    +   + +L  L+ 
Sbjct: 81  K-PLTNLKNLGWLFLDENKIKDLS---SLKDLKKLKSLSLEHNGISDING-LVHLPQLES 135

Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNS 183
           +        +  N+     I+ +  +  L  L                  + L     ++
Sbjct: 136 L-------YLGNNK-----ITDITVLSRLTKL------------------DTL--SLEDN 163

Query: 184 KIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQS 243
           +I  + I P    T L +N  +  N +S L         L       +L+L         
Sbjct: 164 QI--SDIVPLAGLTKL-QNLYLSKNHISDL-------RALAGLKNLDVLELFSQEC-LNK 212

Query: 244 LPGNFFMLETLRALYLGDNDFEVLP--AEIGNLKNLQI 279
              +   L     +   D         ++ G+ +   +
Sbjct: 213 PINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNV 250

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 79.4 bits (195), Expect = 2e-16
 Identities = 57/292 (19%), Positives = 96/292 (32%), Gaps = 69/292 (23%)

Query: 9   LSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFG 68
                +K+I P            L    +    T  + L  +  +    + + S+  G  
Sbjct: 6   TVSTPIKQIFP-DDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ-GIQ 62

Query: 69  AFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETF 128
             P +  L L  N L +         L+ L  L+L +N  + L + + +LK L+ +    
Sbjct: 63  YLPNVTKLFLNGNKLTDIK---PLTNLKNLGWLFLDENKIKDLSS-LKDLKKLKSL---- 114

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
               +E N      IS + G+V LP L                  E L     N+KI  T
Sbjct: 115 ---SLEHNG-----ISDINGLVHLPQL------------------ESL--YLGNNKI--T 144

Query: 189 SIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQS 243
            I      T L +  K+       N++S +         L+       L L+ N++++  
Sbjct: 145 DI------TVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQ------NLYLSKNHISDLR 191

Query: 244 LPGNFFMLETLRALYLGDNDFEVLPAEIG-------NLKNLQIMLEPRWVIS 288
                  L+ L  L L   +    P            +KN    L    +IS
Sbjct: 192 ---ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 240

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.4 bits (177), Expect = 4e-14
 Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
           +  + L +NK+ +I   L+ L  L+ L+L +NQI  +   L+ L KL+ L L  N +S L
Sbjct: 133 LESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDL 190

Query: 64  PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP--AEIGNLKNL 121
                    L+VL+L            +   L     +   D         ++ G+ +  
Sbjct: 191 R-ALAGLKNLDVLELFSQEC-LNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKP 248

Query: 122 QII 124
            + 
Sbjct: 249 NVK 251

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} Length = 287

 Score = 82.7 bits (205), Expect = 3e-18
 Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 4/83 (4%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           N+  L  I +  LP    KN G IV + S+AG    P    YCASKFAV    ++    L
Sbjct: 147 NVTALINITQAVLPIFQAKNSGDIVNLGSIAGRDAYPTGSIYCASKFAVGAFTDS----L 202

Query: 177 REDARNSKIKFTSIFPFMVDTGL 199
           R++  N+KI+   I P +V+T  
Sbjct: 203 RKELINTKIRVILIAPGLVETEF 225

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 83.4 bits (206), Expect = 9e-18
 Identities = 45/291 (15%), Positives = 96/291 (32%), Gaps = 24/291 (8%)

Query: 4   ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLS 61
              ++LS N + E+    ++ L  L +L L +N+I +L   +      L  L++  NRL 
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113

Query: 62  SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP-AEIGNLKN 120
           ++         L  LDL++N+ +   +   F  L  L  L L    F  L    + +L  
Sbjct: 114 NIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHL 171

Query: 121 LQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDA 180
             I+L+     +       +   ++    +       +          +  L        
Sbjct: 172 SCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL-------- 223

Query: 181 RNSKIKFTSIFPFMVDTGLCK-NPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNL 239
           + S IK        + T L +      +  ++           ++ F F     + Y N+
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283

Query: 240 NEQSLPGNFF---------MLETLRALYLGDNDFEVLPAEIGN-LKNLQIM 280
              ++               L++L   ++ +  F      + +    + I 
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 83.0 bits (205), Expect = 1e-17
 Identities = 42/120 (35%), Positives = 59/120 (49%), Gaps = 10/120 (8%)

Query: 9   LSHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRG- 66
            S+  L  +P  L      + L+L  N I  L    +S L +LR+L L  NR+ SL    
Sbjct: 38  YSNRNLTHVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV 95

Query: 67  FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP--AEIGNLKNLQII 124
           F     LE LD+++N L  Q++      + +LR L L  NDF+VLP   E GNL  L  +
Sbjct: 96  FLFNQDLEYLDVSHNRL--QNIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFL 151

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 74.5 bits (183), Expect = 7e-15
 Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 11/127 (8%)

Query: 5   TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSL-----SSLPKLRILNLGMNR 59
             + L  N LK          N+  L   +  + +L +       +    + +LNL  N 
Sbjct: 380 QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439

Query: 60  LSSLPRGFGAFPV-LEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GN 117
           L+     F   P  ++VLDL  N +   S+P +   L+ L+ L +  N  + +P  +   
Sbjct: 440 LTGSV--FRCLPPKVKVLDLHNNRI--MSIPKDVTHLQALQELNVASNQLKSVPDGVFDR 495

Query: 118 LKNLQII 124
           L +LQ I
Sbjct: 496 LTSLQYI 502

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 73.8 bits (181), Expect = 1e-14
 Identities = 51/313 (16%), Positives = 85/313 (27%), Gaps = 51/313 (16%)

Query: 5   TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTS--LSSLPKLRILNLGMNRLSS 62
             + +SHN+L+ I      + +L  L L  N  + LP      +L KL  L L   +   
Sbjct: 103 EYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160

Query: 63  LPRGFGAFPVLEVLDLTYNNLNEQSLPGN---FFMLETLRALYLGDND------------ 107
           L         L  L     +L    + G       +     L+L  +             
Sbjct: 161 LD--LLPVAHLH-LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSV 217

Query: 108 -------FEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLV-PYC 159
                     +     N + L   L          N       ++    V L     P  
Sbjct: 218 NALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRP 277

Query: 160 ASKFAVRGL--------------MEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKI 205
                +  L                AL   + E  +N    F+    + V   +     +
Sbjct: 278 VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEM-NIKML 336

Query: 206 KMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE 265
            ++    +       P     S  T L+ T N     S+      L+ L+ L L  N  +
Sbjct: 337 SISDTPFIHMVCPPSP-----SSFTFLNFTQNVF-TDSVFQGCSTLKRLQTLILQRNGLK 390

Query: 266 VLPAEIGNLKNLQ 278
                    KN+ 
Sbjct: 391 NFFKVALMTKNMS 403

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 70.3 bits (172), Expect = 2e-13
 Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 15/128 (11%)

Query: 4   ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSS 62
            T +  + N   +      + L  L+ L L  N ++           +  L      L+S
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414

Query: 63  LPRG-----FGAFPVLEVLDLTYNNLNE---QSLPGNFFMLETLRALYLGDNDFEVLPAE 114
           L              + VL+L+ N L     + LP        ++ L L +N    +P +
Sbjct: 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK------VKVLDLHNNRIMSIPKD 468

Query: 115 IGNLKNLQ 122
           + +L+ LQ
Sbjct: 469 VTHLQALQ 476

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 62.6 bits (152), Expect = 5e-11
 Identities = 46/302 (15%), Positives = 82/302 (27%), Gaps = 45/302 (14%)

Query: 5   TRITLSHNKLKEIPPG--LANLVNLEILTLFNNQIETLP-TSLSSLP-KLRILNLGMNRL 60
             + LS N    +P      NL  L  L L   +   L    ++ L     +L+L    +
Sbjct: 124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHI 183

Query: 61  SSLPRGFGAFPVLEVLDLTYNNLNEQSLP----GNFFMLETLRALYLGDNDFEVLPAEIG 116
                     P   VL L ++  +  S+      N      L  + L D + + L   + 
Sbjct: 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS 243

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAG------------IVGLPNLVPYCASKFA 164
            L     +L   L  +    +  +                    I    +   +  S+ A
Sbjct: 244 ELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETA 303

Query: 165 VRGLM-----------------EALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM 207
           ++ LM                    AE   +    S   F  +      +          
Sbjct: 304 LKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSF-TFLNFTQ 362

Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL 267
           N  +     F     L+       L L  N L  ++      M + + +L   D     L
Sbjct: 363 NVFTDSV--FQGCSTLKR---LQTLILQRNGL--KNFFKVALMTKNMSSLETLDVSLNSL 415

Query: 268 PA 269
            +
Sbjct: 416 NS 417

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 62.6 bits (152), Expect = 6e-11
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 4   ITRITLSHNKLKE-IPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSS 62
           I  + LS N L   +   L     +++L L NN+I ++P  ++ L  L+ LN+  N+L S
Sbjct: 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKS 487

Query: 63  LPRG-FGAFPVLEVLDLTYNN 82
           +P G F     L+ + L  N 
Sbjct: 488 VPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 59.9 bits (145), Expect = 4e-10
 Identities = 47/292 (16%), Positives = 92/292 (31%), Gaps = 60/292 (20%)

Query: 2   LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQI------ETLPTSLSSLPKLRILNL 55
           + +  I  +     ++         +E L ++N  I      E    S ++L  L I ++
Sbjct: 254 VTLQHIETTWKCSVKLFQ-FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV 312

Query: 56  GMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPA 113
                       +  F  + +  L+ ++     +         +   L    N F     
Sbjct: 313 KNQVFLFSKEALYSVFAEMNIKMLSISDT--PFIHMVCPPSPSSFTFLNFTQNVFTDSVF 370

Query: 114 EI-GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGI-VGLPNLVPYCASKFAVRGLMEA 171
           +    LK LQ +       ++++N   +     +A +   + +L                
Sbjct: 371 QGCSTLKRLQTL-------ILQRNG--LKNFFKVALMTKNMSSL---------------- 405

Query: 172 LAEELREDARNSKIKFTSIFPFMVDTGLCKNP-KIKMNRLSS--LPRG-FGAFPVLEAFS 227
              E  + + NS                C     I +  LSS  L    F   P      
Sbjct: 406 ---ETLDVSLNS-------LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK---- 451

Query: 228 FTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQ 278
              +LDL  N +   S+P +   L+ L+ L +  N  + +P  +   L +LQ
Sbjct: 452 -VKVLDLHNNRI--MSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQ 500

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 46/333 (13%), Positives = 90/333 (27%), Gaps = 64/333 (19%)

Query: 5   TRITLSHNKLKEIPPGLANLVNLEILTLFN--NQIETLPTSLSSLPKLRILNLGMNRLSS 62
           T + LS  K +++       ++L  + L      I+   T    +P   +L+L  +  S 
Sbjct: 149 TFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL 208

Query: 63  LPR----GFGAFPVLEVLDLTYNNLNEQSLPGNFFMLE--------TLRALYLGDNDFE- 109
                     A   L++ ++  N+ N Q L      L         TL+ +         
Sbjct: 209 FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVK 268

Query: 110 -VLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGL 168
                    ++ L I   T    +  +   +         I  + N V      F+   L
Sbjct: 269 LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL----FSKEAL 324

Query: 169 MEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAFPVLE--- 224
               AE   +    S   F  +      +          N  +            L+   
Sbjct: 325 YSVFAEMNIKMLSISDTPFIHMVCPPSPSSF-TFLNFTQNVFTDSVFQGCSTLKRLQTLI 383

Query: 225 ------------AFSFTTILDLTYNNLNEQSLP-GNFFML-------------------- 251
                       A     +  L   +++  SL    +                       
Sbjct: 384 LQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS 443

Query: 252 ------ETLRALYLGDNDFEVLPAEIGNLKNLQ 278
                   ++ L L +N    +P ++ +L+ LQ
Sbjct: 444 VFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQ 476

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} Length = 235

 Score = 79.9 bits (198), Expect = 1e-17
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 7/83 (8%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           NL  +   L+ FL  +       +V  S ++  + +P    Y ++K+A R L+     E 
Sbjct: 111 NLLGVWRTLKAFLDSLKRTGGLALVTTSDVSARL-IPYGGGYVSTKWAARALVRTFQIE- 168

Query: 177 REDARNSKIKFTSIFPFMVDTGL 199
                N  ++F  + P  VDT  
Sbjct: 169 -----NPDVRFFELRPGAVDTYF 186

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 78.8 bits (195), Expect = 2e-17
 Identities = 28/156 (17%), Positives = 59/156 (37%), Gaps = 16/156 (10%)

Query: 1   MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRL 60
           M  +T ITL++  + ++  G+    N++ LT+ N         +S L  L  L +    +
Sbjct: 43  MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDV 100

Query: 61  SSL-PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLK 119
           +S           L +LD++++  ++  L      L  + ++ L  N        +  L 
Sbjct: 101 TSDKIPNLSGLTSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAITDIMPLKTLP 159

Query: 120 NLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNL 155
            L+ +        ++ +      +    GI   P L
Sbjct: 160 ELKSL-------NIQFDG-----VHDYRGIEDFPKL 183

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.1 bits (162), Expect = 4e-13
 Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 17/153 (11%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
                L  +    I    A + +L  +TL N  +  L T +     ++ L +     ++ 
Sbjct: 25  YLNGLLGQSSTANITE--AQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNY 81

Query: 64  PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQ 122
                    LE L +   ++    +P N   L +L  L +  +  +      I  L  + 
Sbjct: 82  N-PISGLSNLERLRIMGKDVTSDKIP-NLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139

Query: 123 IILETFLPDMMEKNRGHIVGISSMAGIVGLPNL 155
            I           +  +   I+ +  +  LP L
Sbjct: 140 SI-----------DLSYNGAITDIMPLKTLPEL 161

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.0 bits (141), Expect = 3e-10
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 2/81 (2%)

Query: 5   TRITLSHNKLKEI-PPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
           T + +SH+   +     +  L  +  + L  N   T    L +LP+L+ LN+  + +   
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY 174

Query: 64  PRGFGAFPVLEVLDLTYNNLN 84
            RG   FP L  L      + 
Sbjct: 175 -RGIEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 5   TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
             I LS+N        L  L  L+ L +  + +      +   PKL  L      +   
Sbjct: 139 NSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQTIGGK 196

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* Length = 248

 Score = 79.9 bits (198), Expect = 2e-17
 Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           N K L  +    LP M+E+N GHI+ I S AG         Y A+K  VR         L
Sbjct: 106 NNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLN----L 161

Query: 177 REDARNSKIKFTSIFPFMVDT 197
           R D   + ++ T I P +V  
Sbjct: 162 RTDLHGTAVRVTDIEPGLVGG 182

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 81.7 bits (202), Expect = 2e-17
 Identities = 45/287 (15%), Positives = 79/287 (27%), Gaps = 69/287 (24%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
           +T +  S NK+ E+   ++    L  L    N I  L   L+   +L  L+   N+L+ +
Sbjct: 172 LTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEI 227

Query: 64  PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
                    L   D + N L E     +   L  L  L+    D   +   + +   L  
Sbjct: 228 D--VTPLTQLTYFDCSVNPLTEL----DVSTLSKLTTLHCIQTDLLEID--LTHNTQLIY 279

Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNS 183
                   + E +            +     L                    L       
Sbjct: 280 FQAEGCRKIKELD------------VTHNTQL------------------YLLD----CQ 305

Query: 184 KIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFTTILDLTYNN 238
               T +        L +NPK+         L+ L         L        L     +
Sbjct: 306 AAGITELD-------LSQNPKLVYLYLNNTELTELD--VSHNTKL------KSLSCVNAH 350

Query: 239 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIMLEPRW 285
           + + S  G    +  L   +  +     +P E     +L I + P  
Sbjct: 351 IQDFSSVGK---IPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDL 394

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 80.1 bits (198), Expect = 8e-17
 Identities = 45/281 (16%), Positives = 76/281 (27%), Gaps = 71/281 (25%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
           +T +   ++ + ++  G+  L  L  L   +N I TL   LS    L  L    N+L++L
Sbjct: 44  LTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL 100

Query: 64  PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
                    L  L+   N L +     +      L  L    N    +   + +   L  
Sbjct: 101 D--VTPLTKLTYLNCDTNKLTK----LDVSQNPLLTYLNCARNTLTEID--VSHNTQLTE 152

Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNS 183
           +                    +   +     L                    L  D   +
Sbjct: 153 LDCHLN------------KKITKLDVTPQTQL------------------TTL--DCSFN 180

Query: 184 KIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFTTILDLTYNN 238
           KI  T +        + +N  +       N ++ L         L      T LD + N 
Sbjct: 181 KI--TEL-------DVSQNKLLNRLNCDTNNITKLD--LNQNIQL------TFLDCSSNK 223

Query: 239 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
           L    +      L  L       N    L   +  L  L  
Sbjct: 224 LT--EID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTT 258

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 71.6 bits (176), Expect = 6e-14
 Identities = 50/316 (15%), Positives = 84/316 (26%), Gaps = 101/316 (31%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
           +T++  + N +  +   L+   NL  L   +N++  L   ++ L KL  LN   N+L+ L
Sbjct: 66  LTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKL 121

Query: 64  PRGFGAFPVLEVLDLTYNNL------------------NEQSLPGNFFMLETLRALYLGD 105
                  P+L  L+   N L                  N++    +      L  L    
Sbjct: 122 D--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSF 179

Query: 106 NDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV 165
           N    L   +   K L  +         + N      I+ +  +     L          
Sbjct: 180 NKITELD--VSQNKLLNRL-------NCDTNN-----ITKL-DLNQNIQL---------- 214

Query: 166 RGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAF 220
                     L  D  ++K+  T I        +    ++       N L+ L       
Sbjct: 215 --------TFL--DCSSNKL--TEI-------DVTPLTQLTYFDCSVNPLTELD--VSTL 253

Query: 221 PVLEAFSFTTILDLTYNNLNEQSLPGN------------------FFMLETLRALYLGDN 262
             L      T L     +L E  L  N                        L  L     
Sbjct: 254 SKL------TTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAA 307

Query: 263 DFEVLPAEIGNLKNLQ 278
               L   +     L 
Sbjct: 308 GITELD--LSQNPKLV 321

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 71.6 bits (176), Expect = 6e-14
 Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 8/126 (6%)

Query: 7   ITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPR 65
           I       ++I    + +   L +L      I  L   LS  PKL  L L    L+ L  
Sbjct: 278 IYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNNTELTELD- 334

Query: 66  GFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIIL 125
                  L+ L     ++ + S  G    +  L   +  +     +P E     +L I +
Sbjct: 335 -VSHNTKLKSLSCVNAHIQDFSSVGK---IPALNNNFEAEGQTITMPKETLTNNSLTIAV 390

Query: 126 ETFLPD 131
              L D
Sbjct: 391 SPDLLD 396

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 9/103 (8%)

Query: 22  ANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYN 81
            N  +           +T+  S   L  L  L+   + ++ +  G      L  L  T N
Sbjct: 18  DNFASEVAAAFEMQATDTI--SEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSN 74

Query: 82  NLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQII 124
           N+   +L         L  L    N    L   +  L  L  +
Sbjct: 75  NI--TTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL 111

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 78.6 bits (194), Expect = 3e-17
 Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 5/105 (4%)

Query: 5   TRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSS 62
             + L  N+L  +P G+  +L  L +L L  NQ+  LP+++   L  L+ L +  N+L+ 
Sbjct: 67  KELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE 126

Query: 63  LPRGFGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDN 106
           LPRG      L  L L  N L  +S+P G F  L +L   YL  N
Sbjct: 127 LPRGIERLTHLTHLALDQNQL--KSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 75.9 bits (187), Expect = 3e-16
 Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 6/124 (4%)

Query: 5   TRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSS 62
             + L  N++ ++ PG+  +L+NL+ L L +NQ+  LP  +  SL +L +L+LG N+L+ 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 63  LPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKN 120
           LP   F     L+ L +  N L    LP     L  L  L L  N  + +P      L +
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKL--TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160

Query: 121 LQII 124
           L   
Sbjct: 161 LTHA 164

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 66.3 bits (162), Expect = 7e-13
 Identities = 41/113 (36%), Positives = 54/113 (47%), Gaps = 7/113 (6%)

Query: 13  KLKEIPPGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLPRG-FGAF 70
           +   +P G+    N +IL L +NQI  L      SL  L+ L LG N+L +LP G F + 
Sbjct: 30  RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL 87

Query: 71  PVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 122
             L VLDL  N L    LP   F  L  L+ L++  N    LP  I  L +L 
Sbjct: 88  TQLTVLDLGTNQL--TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLT 138

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.5 bits (108), Expect = 8e-06
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPT----SLSSLPKLRILN 54
           +  + +  NKL E+P G+  L +L  L L  NQ++++P      LSSL    +  
Sbjct: 114 LKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 39.3 bits (92), Expect = 9e-04
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 8/72 (11%)

Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEV 266
           N+L +LP G     V ++ +  T+LDL  N L    LP   F  L  L+ L++  N    
Sbjct: 74  NQLGALPVG-----VFDSLTQLTVLDLGTNQL--TVLPSAVFDRLVHLKELFMCCNKLTE 126

Query: 267 LPAEIGNLKNLQ 278
           LP  I  L +L 
Sbjct: 127 LPRGIERLTHLT 138

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} Length = 230

 Score = 78.0 bits (193), Expect = 6e-17
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 5/72 (6%)

Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
            +    ++   ++V I S A          YCA K+AV+GL+E++  EL+       +K 
Sbjct: 114 LVKRYKDQP-VNVVMIMSTAAQQPKAQESTYCAVKWAVKGLIESVRLELKG----KPMKI 168

Query: 188 TSIFPFMVDTGL 199
            +++P  + T  
Sbjct: 169 IAVYPGGMATEF 180

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 Length = 279

 Score = 78.4 bits (194), Expect = 9e-17
 Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 6/87 (6%)

Query: 117 NLKNLQIILETFLPDMMEKN--RGHIVGISSMAG--IVGLPNLVPYCASKFAVRGLMEAL 172
           N+  L I        M E+N   GHI+ I+SM+G  ++ L     Y A+K+AV  L E L
Sbjct: 142 NVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFYSATKYAVTALTEGL 201

Query: 173 AEELREDARNSKIKFTSIFPFMVDTGL 199
            +ELRE    + I+ T I P +V+T  
Sbjct: 202 RQELRE--AQTHIRATCISPGVVETQF 226

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* Length = 247

 Score = 77.6 bits (192), Expect = 1e-16
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           NL  L  +    LP ++ +++G +V +SS+AG V + N   Y A+KF V    E     L
Sbjct: 115 NLLGLMYMTRAALPHLL-RSKGTVVQMSSIAGRVNVRNAAVYQATKFGVNAFSET----L 169

Query: 177 REDARNSKIKFTSIFPFMVDTGL 199
           R++     ++   I P   DT L
Sbjct: 170 RQEVTERGVRVVVIEPGTTDTEL 192

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} Length = 281

 Score = 78.1 bits (193), Expect = 1e-16
 Identities = 19/51 (37%), Positives = 26/51 (50%)

Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRE 178
            LP M E+  G +V ISS  G +       Y A+K A+  L E LA+E+  
Sbjct: 121 LLPQMRERGSGSVVNISSFGGQLSFAGFSAYSATKAALEQLSEGLADEVAP 171

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 75.9 bits (187), Expect = 2e-16
 Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 5/113 (4%)

Query: 9   LSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFG 68
                ++++   L+ L   + L L  N IE + +SLS +  LRIL+LG N +  +     
Sbjct: 32  GMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIENLDA 90

Query: 69  AFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL 121
               LE L ++YN +   S       L  LR LY+ +N       EI  L  L
Sbjct: 91  VADTLEELWISYNQIASLS---GIEKLVNLRVLYMSNNKITNW-GEIDKLAAL 139

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 67.0 bits (164), Expect = 3e-13
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 2/98 (2%)

Query: 9   LSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFG 68
           LS N +++I   L+ + NL IL+L  N I+ +    +    L  L +  N+++SL  G  
Sbjct: 55  LSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-SGIE 112

Query: 69  AFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDN 106
               L VL ++ N +           L+ L  L L  N
Sbjct: 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 60.5 bits (147), Expect = 4e-11
 Identities = 29/154 (18%), Positives = 55/154 (35%), Gaps = 16/154 (10%)

Query: 5   TRITLSHNKLKEI-PPGLANLVNLEILTLFN--NQIETLPTSLSSLPKLRILNLGMNRLS 61
            + T   + ++             E + L      IE +  +LS+L   + L L  N + 
Sbjct: 2   AKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE 61

Query: 62  SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL 121
            +         L +L L  N +  + +     + +TL  L++  N    L + I  L NL
Sbjct: 62  KI-SSLSGMENLRILSLGRNLI--KKIENLDAVADTLEELWISYNQIASL-SGIEKLVNL 117

Query: 122 QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNL 155
           +++        M  N+  I     +  +  L  L
Sbjct: 118 RVL-------YMSNNK--ITNWGEIDKLAALDKL 142

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} Length = 272

 Score = 76.9 bits (190), Expect = 3e-16
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 117 NLKNLQIILETFLPDMMEKNRG-HIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEE 175
           N+K L       LP ++    G  IV + S+AG    P    Y  +K  V          
Sbjct: 129 NIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPYPGSHVYGGTKAFVEQFSLN---- 184

Query: 176 LREDARNSKIKFTSIFPFMVDT 197
           LR D + + ++ T++ P + ++
Sbjct: 185 LRCDLQGTGVRVTNLEPGLCES 206

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... Length = 327

 Score = 77.8 bits (192), Expect = 3e-16
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
           FLPDM  +  G ++   S+ G++GLP    YCASKFA+ GL E+LA  L        +  
Sbjct: 125 FLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLP----FGVHL 180

Query: 188 TSIFPFMVDT 197
           + I    V T
Sbjct: 181 SLIECGPVHT 190

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 77.0 bits (190), Expect = 3e-16
 Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 19/152 (12%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
           I +I  +++ +K +  G+  L N+  L L  N++  +   L++L  L  L L  N++  L
Sbjct: 48  IDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDL 105

Query: 64  PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
                    L+ L L +N +++ +       L  L +LYLG+N    +   +  L  L  
Sbjct: 106 S-SLKDLKKLKSLSLEHNGISDIN---GLVHLPQLESLYLGNNKITDITV-LSRLTKLDT 160

Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNL 155
           +        +E N+     IS +  + GL  L
Sbjct: 161 LS-------LEDNQ-----ISDIVPLAGLTKL 180

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 74.7 bits (184), Expect = 2e-15
 Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 7/120 (5%)

Query: 5   TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP 64
             + L  NK+K++   L +L  L+ L+L +N I  +   L  LP+L  L LG N+++ + 
Sbjct: 93  GWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDIT 150

Query: 65  RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQII 124
                   L+ L L  N +++         L  L+ LYL  N    L   +  LKNL ++
Sbjct: 151 -VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVL 205

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 73.5 bits (181), Expect = 5e-15
 Identities = 26/152 (17%), Positives = 58/152 (38%), Gaps = 19/152 (12%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
             +  L    + +       L +++ +   N+ I+++   +  LP +  L L  N+L+ +
Sbjct: 26  TIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDI 83

Query: 64  PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
                    L  L L  N + + S   +   L+ L++L L  N    +   + +L  L+ 
Sbjct: 84  K-PLANLKNLGWLFLDENKVKDLS---SLKDLKKLKSLSLEHNGISDING-LVHLPQLES 138

Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNL 155
           +        +  N+     I+ +  +  L  L
Sbjct: 139 L-------YLGNNK-----ITDITVLSRLTKL 158

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 70.1 bits (172), Expect = 7e-14
 Identities = 55/277 (19%), Positives = 93/277 (33%), Gaps = 64/277 (23%)

Query: 9   LSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFG 68
                +K+I              L    +    T  + L  +  +    + + S+  G  
Sbjct: 9   TVPTPIKQIFS-DDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ-GIQ 65

Query: 69  AFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETF 128
             P +  L L  N L +         L+ L  L+L +N  + L + + +LK L+ +    
Sbjct: 66  YLPNVTKLFLNGNKLTDIK---PLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL---- 117

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
               +E N      IS + G+V LP L                  E L     N+KI  T
Sbjct: 118 ---SLEHNG-----ISDINGLVHLPQL------------------ESL--YLGNNKI--T 147

Query: 189 SIFPFMVDTGLCKNPKIKM-----NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQS 243
            I      T L +  K+       N++S +         L+       L L+ N++++  
Sbjct: 148 DI------TVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQ------NLYLSKNHISDLR 194

Query: 244 LPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIM 280
                  L+ L  L L     E L   I +  NL + 
Sbjct: 195 ---ALAGLKNLDVLELFSQ--ECLNKPINHQSNLVVP 226

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 3/85 (3%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTS-LSSLPKLRILNLGMNRLSS 62
           +  + LS N + ++   LA L NL++L LF+ +    P +  S+L     +      L +
Sbjct: 180 LQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 238

Query: 63  LPRGFGAFPVLEVLDLTYNNLNEQS 87
            P         E  ++ ++     +
Sbjct: 239 -PEIISDDGDYEKPNVKWHLPEFTN 262

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 75.0 bits (185), Expect = 3e-16
 Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 5/105 (4%)

Query: 5   TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSSL 63
           T + L  N+   +P  L+N  +L ++ L NN+I TL     S++ +L  L L  NRL  +
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93

Query: 64  PRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDN 106
           P   F     L +L L  N++    +P G F  L  L  L +G N
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDI--SVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 73.5 bits (181), Expect = 1e-15
 Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 7/118 (5%)

Query: 10  SHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRG-FG 68
           S+  LK +P G+    ++  L L  NQ   +P  LS+   L +++L  NR+S+L    F 
Sbjct: 18  SNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFS 75

Query: 69  AFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEI-GNLKNLQII 124
               L  L L+YN L  + +P   F  L++LR L L  ND  V+P     +L  L  +
Sbjct: 76  NMTQLLTLILSYNRL--RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHL 131

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 10/76 (13%)

Query: 206 KMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDF 264
             N+ + +P+    +  L      T++DL+ N +   +L   +F  +  L  L L  N  
Sbjct: 39  DGNQFTLVPKELSNYKHL------TLIDLSNNRI--STLSNQSFSNMTQLLTLILSYNRL 90

Query: 265 EVLPAEI-GNLKNLQI 279
             +P      LK+L++
Sbjct: 91  RCIPPRTFDGLKSLRL 106

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 75.4 bits (186), Expect = 8e-16
 Identities = 34/152 (22%), Positives = 63/152 (41%), Gaps = 20/152 (13%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
           +      ++ ++ +  G+    NL+ L L +NQI  L + L  L KL  L++  NRL +L
Sbjct: 43  VQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKNL 100

Query: 64  PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
                    L  L L  N L +     +   L+ L  L + +N  + +   +G L  L++
Sbjct: 101 N--GIPSACLSRLFLDNNELRDTD---SLIHLKNLEILSIRNNKLKSIVM-LGFLSKLEV 154

Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNL 155
           +        +  N      I++  G+  L  +
Sbjct: 155 L-------DLHGNE-----ITNTGGLTRLKKV 174

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 72.0 bits (177), Expect = 1e-14
 Identities = 29/152 (19%), Positives = 58/152 (38%), Gaps = 20/152 (13%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
             +  L    + ++      L  ++     N+ I++L   +     L+ L+L  N++S L
Sbjct: 21  AVKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISDL 78

Query: 64  PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
                    LE L +  N L   +          L  L+L +N+     + + +LKNL+I
Sbjct: 79  S-PLKDLTKLEELSVNRNRLKNLN----GIPSACLSRLFLDNNELRDTDS-LIHLKNLEI 132

Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNL 155
           +        +  N+     + S+  +  L  L
Sbjct: 133 L-------SIRNNK-----LKSIVMLGFLSKL 152

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 69.7 bits (171), Expect = 8e-14
 Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 8/121 (6%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
           +  + LSHN++ ++ P L +L  LE L++  N+++ L  +      L  L L  N L   
Sbjct: 65  LKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNL--NGIPSACLSRLFLDNNELRDT 121

Query: 64  PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
                    LE+L +  N L           L  L  L L  N+       +  LK +  
Sbjct: 122 D-SLIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNTG-GLTRLKKVNW 176

Query: 124 I 124
           I
Sbjct: 177 I 177

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 67.0 bits (164), Expect = 6e-13
 Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 8/126 (6%)

Query: 2   LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLS 61
             ++R+ L +N+L++    L +L NLEIL++ NN+++++   L  L KL +L+L  N ++
Sbjct: 106 ACLSRLFLDNNELRDTDS-LIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEIT 163

Query: 62  SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI---GNL 118
           +   G      +  +DLT      + +      L     +   D  + + P  I   G+ 
Sbjct: 164 NTG-GLTRLKKVNWIDLTGQKCVNEPVK-YQPELYITNTVKDPDGRW-ISPYYISNGGSY 220

Query: 119 KNLQII 124
            +  ++
Sbjct: 221 VDGCVL 226

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 64.7 bits (158), Expect = 3e-12
 Identities = 28/148 (18%), Positives = 49/148 (33%), Gaps = 22/148 (14%)

Query: 9   LSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFG 68
                + ++ P    L N     L    +  L  S   L  ++  N   + + SL  G  
Sbjct: 4   QRPTPINQVFP-DPGLANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQSLA-GMQ 60

Query: 69  AFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILET 127
            F  L+ L L++N +++ S       L  L  L +  N  + L       L  L +    
Sbjct: 61  FFTNLKELHLSHNQISDLS---PLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFL---- 113

Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNL 155
                 + N      +     ++ L NL
Sbjct: 114 ------DNNE-----LRDTDSLIHLKNL 130

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 76.3 bits (187), Expect = 1e-15
 Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 5/107 (4%)

Query: 5   TRITLSHNKLKEIPPGLANLVNLEILTLFNNQ-IETLPT-SLSSLPKLRILNLGMNRLSS 62
           + +  + +   +    L    NL  L + N Q ++ L    L  L +LR L +  + L  
Sbjct: 11  SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70

Query: 63  LPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF 108
           +    F   P L  L+L++N L  +SL        +L+ L L  N  
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNAL--ESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 63.2 bits (153), Expect = 2e-11
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 3/84 (3%)

Query: 4   ITRITLSHNK-LKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRL 60
           +T + + + + L+ +    L  L  L  LT+  + +  +   +    P+L  LNL  N L
Sbjct: 33  LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92

Query: 61  SSLPRGFGAFPVLEVLDLTYNNLN 84
            SL         L+ L L+ N L+
Sbjct: 93  ESLSWKTVQGLSLQELVLSGNPLH 116

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 74.3 bits (183), Expect = 1e-15
 Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 9/126 (7%)

Query: 5   TRITLSHN-KLKEIPPGL-ANLVNLEILTLFNNQ-IETLPTS-LSSLPKLRILNLGMNRL 60
           +RI +S +  L+++      NL  +  + + N + +  +    L  LP L+ L +    L
Sbjct: 58  SRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL 117

Query: 61  SSLP--RGFGAFPVLEVLDLTYNNLNEQSLPGNFF--MLETLRALYLGDNDFEVLPAEIG 116
              P      +  +  +L++T N     S+P N F  +      L L +N F  +     
Sbjct: 118 KMFPDLTKVYSTDIFFILEITDNPYM-TSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF 176

Query: 117 NLKNLQ 122
           N   L 
Sbjct: 177 NGTKLD 182

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 74.3 bits (183), Expect = 1e-15
 Identities = 25/131 (19%), Positives = 51/131 (38%), Gaps = 11/131 (8%)

Query: 4   ITRITLSHNKLKEIPPG-LANLVNLEILTL-FNNQIETLPT-SLSSLPKLRILNLGMNR- 59
              + L    L+ IP    +NL N+  + +  +  ++ L + S  +L K+  + +   R 
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 60  LSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGN--FFMLETLRALYLGDNDF-EVLPAEI 115
           L+ +        P+L+ L +    L  +  P     +  +    L + DN +   +P   
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGL--KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 116 -GNLKNLQIIL 125
              L N  + L
Sbjct: 151 FQGLCNETLTL 161

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 72.0 bits (177), Expect = 1e-14
 Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 13/111 (11%)

Query: 5   TRITLSHNK-LKEIPPG-LANLVNLEILTLFNNQIETLP--TSLSSLPKLRILNLGMN-R 59
           T I + + + L  I P  L  L  L+ L +FN  ++  P  T + S     IL +  N  
Sbjct: 83  THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPY 142

Query: 60  LSSLPRGFGAF----PVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDN 106
           ++S+P    AF         L L  N     S+ G  F    L A+YL  N
Sbjct: 143 MTSIPV--NAFQGLCNETLTLKLYNNGF--TSVQGYAFNGTKLDAVYLNKN 189

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 69.3 bits (170), Expect = 7e-14
 Identities = 39/286 (13%), Positives = 87/286 (30%), Gaps = 77/286 (26%)

Query: 5   TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMN-RLSS 62
               ++   ++ IP    +    + L L    + T+P+ + S+LP +  + + ++  L  
Sbjct: 14  EDFRVTCKDIQRIPSLPPST---QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ 70

Query: 63  LPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAE--IGNL 118
           L    F     +  +++     N   +  +    L  L+ L + +   ++ P    + + 
Sbjct: 71  LESHSFYNLSKVTHIEIRNTR-NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYST 129

Query: 119 KNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRE 178
               I+      ++ +    ++  I   A   GL N                     L+ 
Sbjct: 130 DIFFIL------EITDNP--YMTSIPVNA-FQGLCNET-----------------LTLK- 162

Query: 179 DARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTI--LDLTY 236
                               L  N        +S+           AF+ T +  + L  
Sbjct: 163 --------------------LYNN------GFTSVQGY--------AFNGTKLDAVYLNK 188

Query: 237 NNLNEQSLPGNFF--MLETLRALYLGDNDFEVLPAEI-GNLKNLQI 279
           N      +  + F  +      L +       LP++   +LK L  
Sbjct: 189 NK-YLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIA 233

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 8/99 (8%)

Query: 9   LSHNKLKEIPPG-LANLVN-LEILTLFNNQIETLPTSLSSLPKLRILNLGMNR-LSSLPR 65
             +  +  IP      L N    L L+NN   ++     +  KL  + L  N+ L+ + +
Sbjct: 138 TDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK 197

Query: 66  G-F-GAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRAL 101
             F G +    +LD++  ++   +LP      L+ L A 
Sbjct: 198 DAFGGVYSGPSLLDVSQTSV--TALPSKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.8 bits (117), Expect = 7e-07
 Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 5/76 (6%)

Query: 9   LSHNKLKEIPPGLANLVNLEILTL-FNNQIETLPT-SLSSLP-KLRILNLGMNRLSSLPR 65
           L +N    +     N   L+ + L  N  +  +   +   +     +L++    +++LP 
Sbjct: 163 LYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP- 221

Query: 66  GFGAFPVLEVLDLTYN 81
                  L+ L     
Sbjct: 222 -SKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 40/239 (16%), Positives = 69/239 (28%), Gaps = 72/239 (30%)

Query: 45  SSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYL 103
                 R+    + R+ SLP         + L L   +L  +++P + F  L  +  +Y+
Sbjct: 11  HQEEDFRVTCKDIQRIPSLPPS------TQTLKLIETHL--RTIPSHAFSNLPNISRIYV 62

Query: 104 GDND-FEVLPAEI-GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCAS 161
             +   + L +    NL  +  I        +   R ++  I   A +  LP L      
Sbjct: 63  SIDVTLQQLESHSFYNLSKVTHI-------EIRNTR-NLTYIDPDA-LKELPLL------ 107

Query: 162 KFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFP 221
                       + L                            I    L   P       
Sbjct: 108 ------------KFLG---------------------------IFNTGLKMFP----DLT 124

Query: 222 VLEAFSFTTILDLTYNNLNEQSLPGNFF--MLETLRALYLGDNDFEVLPAEIGNLKNLQ 278
            + +     IL++T N     S+P N F  +      L L +N F  +     N   L 
Sbjct: 125 KVYSTDIFFILEITDNPYM-TSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLD 182

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 74.3 bits (183), Expect = 2e-15
 Identities = 38/106 (35%), Positives = 59/106 (55%), Gaps = 6/106 (5%)

Query: 5   TRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSS 62
             + L++N+L  +P G+  +L  L+ L L  NQ+++LP+ +   L KL+ L L  N+L S
Sbjct: 86  GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145

Query: 63  LPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDN 106
           +P G F     L+ L L+ N L  QS+P G F  L  L+ + L  N
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQL--QSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 72.0 bits (177), Expect = 9e-15
 Identities = 41/126 (32%), Positives = 56/126 (44%), Gaps = 10/126 (7%)

Query: 5   TRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSS 62
            ++ L    L  +       L  L  L L  NQ++TL   +   L +L  L L  N+L+S
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 63  LPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI----G 116
           LP G F     L+ L L  N L  +SLP G F  L  L+ L L  N  + +PA       
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQL--KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155

Query: 117 NLKNLQ 122
           NL+ L 
Sbjct: 156 NLQTLS 161

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 67.8 bits (166), Expect = 3e-13
 Identities = 41/117 (35%), Positives = 53/117 (45%), Gaps = 11/117 (9%)

Query: 13  KLKEIPPGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLPRG-FGAF 70
            L  +P G+    + E L L +  + TL   +   L KL  LNL  N+L +L  G F   
Sbjct: 25  SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL 82

Query: 71  PVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPA----EIGNLKNLQ 122
             L  L L  N L   SLP G F  L  L  LYLG N  + LP+     +  LK L+
Sbjct: 83  TELGTLGLANNQL--ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 4   ITRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMN 58
           +  + L+ N+L+ IP G    L NL+ L+L  NQ++++P  +   L KL+ + L  N
Sbjct: 133 LKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 12/76 (15%)

Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEV 266
           N+L +L  G   F  L        L L  N L   SLP G F  L  L  LYLG N  + 
Sbjct: 69  NQLQTLSAG--VFDDLTE---LGTLGLANNQL--ASLPLGVFDHLTQLDKLYLGGNQLKS 121

Query: 267 LPA----EIGNLKNLQ 278
           LP+     +  LK L+
Sbjct: 122 LPSGVFDRLTKLKELR 137

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 75.2 bits (185), Expect = 2e-15
 Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 8/109 (7%)

Query: 4   ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETL--PTSLSSLPKLRILNL-GMNR 59
              +     KL+ I  G  +   +LE + +  N +  +      S+LPKL  + +   N 
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 60  LSSLPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDN 106
           L  +    F   P L+ L ++   +  + LP  +         L + DN
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGI--KHLPDVHKIHSLQKVLLDIQDN 138

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 73.3 bits (180), Expect = 9e-15
 Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 14/130 (10%)

Query: 5   TRITLSH-NKLKEIPPG-LANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMN-RL 60
             I +   N L  I P    NL NL+ L + N  I+ LP        +  +L++  N  +
Sbjct: 82  HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI 141

Query: 61  SSLPRGFGAF----PVLEVLDLTYNNLNEQSLPGNFFMLETLRALYL-GDNDFEVLPAEI 115
            ++ R   +F        +L L  N +  Q +  + F    L  L L  +N+ E LP ++
Sbjct: 142 HTIER--NSFVGLSFESVILWLNKNGI--QEIHNSAFNGTQLDELNLSDNNNLEELPNDV 197

Query: 116 -GNLKNLQII 124
                   I+
Sbjct: 198 FHGASGPVIL 207

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 71.8 bits (176), Expect = 4e-14
 Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 9/126 (7%)

Query: 5   TRITLSHNKLKEIPPGL-ANLVNLEILTLF-NNQIETLPT-SLSSLP-KLRILNLGMNRL 60
             + +S+  +K +P     + +   +L +  N  I T+   S   L  +  IL L  N +
Sbjct: 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166

Query: 61  SSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEI-GN 117
             +    F    + E+     NNL  + LP + F        L +       LP+    N
Sbjct: 167 QEIHNSAFNGTQLDELNLSDNNNL--EELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 224

Query: 118 LKNLQI 123
           LK L+ 
Sbjct: 225 LKKLRA 230

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.1 bits (169), Expect = 3e-13
 Identities = 47/285 (16%), Positives = 82/285 (28%), Gaps = 62/285 (21%)

Query: 7   ITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNR-LSSLP 64
                +K+ EIP  L    N   L     ++  +   + S    L  + +  N  L  + 
Sbjct: 14  FLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE 71

Query: 65  RG-FGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEI-GNLKNL 121
              F   P L  + +   N N   +    F  L  L+ L + +   + LP     +    
Sbjct: 72  ADVFSNLPKLHEIRIEKAN-NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 130

Query: 122 QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRE-DA 180
            ++      D+ +              I  +                   L+ E      
Sbjct: 131 VLL------DIQDNIN-----------IHTIER------------NSFVGLSFESVILWL 161

Query: 181 RNSKIKFTSIFPFMVDTGLCKNPKIK------MNRLSSLPRGFGAFPVLEAFSFTTILDL 234
             + I+        +        ++        N L  LP     F      S   ILD+
Sbjct: 162 NKNGIQ-------EIHNSAFNGTQLDELNLSDNNNLEELPN--DVFHGA---SGPVILDI 209

Query: 235 TYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEIGNLKNLQ 278
           +   +   SLP      L+ LRA      + + LP  +  L  L 
Sbjct: 210 SRTRI--HSLPSYGLENLKKLRARST--YNLKKLPT-LEKLVALM 249

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 63.7 bits (155), Expect = 2e-11
 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 9   LSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPRG 66
             +N L+E+P           IL +   +I +LP+  L +L KLR  +     L  LP  
Sbjct: 185 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPT- 241

Query: 67  FGAFPVLEVLDLTYN 81
                 L    LTY 
Sbjct: 242 LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.4 bits (149), Expect = 1e-10
 Identities = 50/262 (19%), Positives = 87/262 (33%), Gaps = 49/262 (18%)

Query: 26  NLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNNLN 84
           +  +     +++  +P+ L        L   + +L  + +G F  F  LE ++++ N++ 
Sbjct: 10  SNRVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67

Query: 85  EQSLPGNFFMLETLRALYL-GDNDFEVLPAEI-GNLKNLQIILETFLPDMMEKNRGHIVG 142
           E      F  L  L  + +   N+   +  E   NL NLQ +L       +         
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL-------ISNT------ 114

Query: 143 ISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKN 202
                GI  LP++             + +L + L +   N  I       F    GL   
Sbjct: 115 -----GIKHLPDVH-----------KIHSLQKVLLDIQDNINIHTIERNSF---VGLSFE 155

Query: 203 PKI---KMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFM-LETLRALY 258
             I     N +  +     AF          +     NNL  + LP + F        L 
Sbjct: 156 SVILWLNKNGIQEIHN--SAFNGT---QLDELNLSDNNNL--EELPNDVFHGASGPVILD 208

Query: 259 LGDNDFEVLPAEI-GNLKNLQI 279
           +       LP+    NLK L+ 
Sbjct: 209 ISRTRIHSLPSYGLENLKKLRA 230

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 4   ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNL 55
              + +S  ++  +P   L NL  L         ++ LP +L  L  L   +L
Sbjct: 204 PVILDISRTRIHSLPSYGLENLKKLRA--RSTYNLKKLP-TLEKLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 37/236 (15%), Positives = 66/236 (27%), Gaps = 69/236 (29%)

Query: 51  RILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDF- 108
           R+     ++++ +P           L      L  + +    F     L  + +  ND  
Sbjct: 12  RVFLCQESKVTEIPSDL--PRNAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVL 67

Query: 109 EVLPAEI-GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRG 167
           EV+ A++  NL  L  I       + + N   ++ I+  A    LPNL            
Sbjct: 68  EVIEADVFSNLPKLHEI------RIEKANN--LLYINPEA-FQNLPNL------------ 106

Query: 168 LMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFS 227
                 + L                            I    +  LP             
Sbjct: 107 ------QYLL---------------------------ISNTGIKHLPDV--HKIHSLQ-- 129

Query: 228 FTTILDLTYNNLNEQSLPGNFF--MLETLRALYLGDNDFEVLPAEIGNLKNLQIML 281
              +LD+  N  N  ++  N F  +      L+L  N  + +     N   L  + 
Sbjct: 130 -KVLLDIQDNI-NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELN 183

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 72.3 bits (178), Expect = 2e-15
 Identities = 43/106 (40%), Positives = 59/106 (55%), Gaps = 6/106 (5%)

Query: 5   TRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSS 62
           TR+ L  NKL+ +P G+   L  L  L+L  NQI++LP  +   L KL IL L  N+L S
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90

Query: 63  LPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDN 106
           LP G F     L+ L L  N L  +S+P G F  L +L+ ++L  N
Sbjct: 91  LPNGVFDKLTQLKELALDTNQL--KSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 8/116 (6%)

Query: 13  KLKEIPPGLANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSSLPRG-FGAF 70
            L  +P G+    +   L L +N++++LP  +   L +L  L+L  N++ SLP G F   
Sbjct: 18  GLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKL 75

Query: 71  PVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQII 124
             L +L L  N L  QSLP G F  L  L+ L L  N  + +P  I   L +LQ I
Sbjct: 76  TKLTILYLHENKL--QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI 129

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 73.9 bits (182), Expect = 3e-15
 Identities = 42/124 (33%), Positives = 58/124 (46%), Gaps = 10/124 (8%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
           I +I  +++ +K +  G+  L N+  L L  N++  +  +L  L  L  L L  N+L SL
Sbjct: 43  IDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSL 100

Query: 64  PRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI----GN 117
           P G F     L+ L L  N L  QSLP G F  L  L  L L  N  + LP  +     N
Sbjct: 101 PNGVFDKLTNLKELVLVENQL--QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN 158

Query: 118 LKNL 121
           L  L
Sbjct: 159 LTEL 162

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 70.4 bits (173), Expect = 5e-14
 Identities = 39/106 (36%), Positives = 59/106 (55%), Gaps = 6/106 (5%)

Query: 5   TRITLSHNKLKEIPPGLAN-LVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSS 62
             + L  N+L+ +P G+ + L NL  L L +NQ+++LP  +   L  L  L+L  N+L S
Sbjct: 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171

Query: 63  LPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDN 106
           LP G F     L+ L L  N L  +S+P G F  L +L+ ++L DN
Sbjct: 172 LPEGVFDKLTQLKDLRLYQNQL--KSVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 68.9 bits (169), Expect = 1e-13
 Identities = 47/124 (37%), Positives = 59/124 (47%), Gaps = 10/124 (8%)

Query: 5   TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSL 63
             + L  NKL +I   L  L NL  L L  NQ+++LP      L  L+ L L  N+L SL
Sbjct: 66  RYLALGGNKLHDISA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL 124

Query: 64  PRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEI----GN 117
           P G F     L  L+L +N L  QSLP G F  L  L  L L  N  + LP  +      
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQL--QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQ 182

Query: 118 LKNL 121
           LK+L
Sbjct: 183 LKDL 186

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 65.0 bits (159), Expect = 3e-12
 Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 7/121 (5%)

Query: 5   TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP 64
            +  L    + +       L +++ +   N+ I+++   +  LP +R L LG N+L  + 
Sbjct: 22  IKANLKKKSVTDAVTQN-ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS 79

Query: 65  RGFGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEIGN-LKNLQ 122
                   L  L LT N L  QSLP G F  L  L+ L L +N  + LP  + + L NL 
Sbjct: 80  -ALKELTNLTYLILTGNQL--QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136

Query: 123 I 123
            
Sbjct: 137 Y 137

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 28/75 (37%), Positives = 31/75 (41%), Gaps = 12/75 (16%)

Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEV 266
           N+L SLP   G F  L        L L  N L  QSLP G F  L  L  L L  N  + 
Sbjct: 95  NQLQSLP--NGVFDKLTN---LKELVLVENQL--QSLPDGVFDKLTNLTYLNLAHNQLQS 147

Query: 267 LPAEI----GNLKNL 277
           LP  +     NL  L
Sbjct: 148 LPKGVFDKLTNLTEL 162

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} Length = 262

 Score = 73.4 bits (181), Expect = 3e-15
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
            P M+   RGHI+ ISS+AG   + +   Y ASK+ + GLM + AEELR       ++ +
Sbjct: 150 APAMIAAKRGHIINISSLAGKNPVADGAAYTASKWGLNGLMTSAAEELR--QHQ--VRVS 205

Query: 189 SIFPFMVDT 197
            + P  V T
Sbjct: 206 LVAPGSVRT 214

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.2 bits (182), Expect = 4e-15
 Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 11/129 (8%)

Query: 4   ITRITLSHNKLKEIP-PGLANLVNLEILTLFNNQIETLPTSLSS-----LPKLRILNLGM 57
           +  ++++           +     L  L L +N        +S+      P L++L L  
Sbjct: 151 LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN 210

Query: 58  NRLSSLP----RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA 113
             + +          A   L+ LDL++N+L + +   +      L +L L     + +P 
Sbjct: 211 AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK 270

Query: 114 EIG-NLKNL 121
            +   L  L
Sbjct: 271 GLPAKLSVL 279

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 65.3 bits (159), Expect = 3e-12
 Identities = 29/106 (27%), Positives = 41/106 (38%), Gaps = 11/106 (10%)

Query: 9   LSHNKLKEIPPG----LANLVNLEILTLFNNQIETLP--TSLSSLPKLRILNLGMNRLSS 62
           L +  ++          A  V L+ L L +N +       S     +L  LNL    L  
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267

Query: 63  LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF 108
           +P+G      L VLDL+YN L+    P     L  +  L L  N F
Sbjct: 268 VPKGL--PAKLSVLDLSYNRLDRNPSPDE---LPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.9 bits (132), Expect = 1e-08
 Identities = 32/139 (23%), Positives = 49/139 (35%), Gaps = 16/139 (11%)

Query: 1   MLYITRITLSHNKL-KEIPPGLANLV--NLEILTLFNNQIETLPTSLSSL-----PKLRI 52
           +  +  +TL + ++    PP L      +L IL L N    T    L+ L     P L++
Sbjct: 94  ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153

Query: 53  LNLGMNRLSSLP-RGFGAFPVLEVLDLTYNNL-NEQSLPGNFF--MLETLRALYLGDNDF 108
           L++      +        FP L  LDL+ N    E+ L          TL+ L L +   
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

Query: 109 EVLPAEI----GNLKNLQI 123
           E               LQ 
Sbjct: 214 ETPSGVCSALAAARVQLQG 232

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.3 bits (102), Expect = 6e-05
 Identities = 34/268 (12%), Positives = 68/268 (25%), Gaps = 38/268 (14%)

Query: 21  LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPV------LE 74
                +LE L    +    L      +  L +  L +       R             L+
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 75  VLDLTYNNLNEQSLPGNFFM-LETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMM 133
            L L    +   + P         L  L L +  +    A +  L+         L   +
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVL--SI 156

Query: 134 EKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPF 193
            +          +      P L                    L  D  ++          
Sbjct: 157 AQAHSLNFSCEQVRV---FPAL------------------STL--DLSDNPELGERGLIS 193

Query: 194 MVDTGLCKNPK---IKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFM 250
            +        +   ++   + +      A  +  A      LDL++N+L + +   +   
Sbjct: 194 ALCPLKFPTLQVLALRNAGMETPSGVCSA--LAAARVQLQGLDLSHNSLRDAAGAPSCDW 251

Query: 251 LETLRALYLGDNDFEVLPAEIG-NLKNL 277
              L +L L     + +P  +   L  L
Sbjct: 252 PSQLNSLNLSFTGLKQVPKGLPAKLSVL 279

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 48/272 (17%), Positives = 85/272 (31%), Gaps = 49/272 (18%)

Query: 18  PPGLANLVNLEILTLFNNQI--ETLPT-----SLSSLPKLRILNLGMNRLSSLPRGFGAF 70
              +   ++L+ LT+   +I    L        +S L +L + NL +   +  P      
Sbjct: 61  FTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120

Query: 71  PVLEVLDLTYNNLNEQSL---PGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQIILE 126
           P L +L+L   +   +         ++   L+ L +          E +     L  +  
Sbjct: 121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTL-- 178

Query: 127 TFLPDMMEKNRGHIVGISSMAGIVGLPNLV------PYCASKFAVRGLMEALAEELRE-D 179
               D+ +       G+ S    +  P L           +   V   + A   +L+  D
Sbjct: 179 ----DLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLD 234

Query: 180 -ARNSKIKFTSIFPFMVDTGLCKNPK------IKMNRLSSLPRGFGAFPVLEAFSFTTIL 232
            + NS                C  P       +    L  +P+G      L       +L
Sbjct: 235 LSHNS-------LRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL--PAKLS------VL 279

Query: 233 DLTYNNLNEQSLPGNFFMLETLRALYLGDNDF 264
           DL+YN L+    P     L  +  L L  N F
Sbjct: 280 DLSYNRLDRNPSPDE---LPQVGNLSLKGNPF 308

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} Length = 254

 Score = 73.1 bits (180), Expect = 4e-15
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 7/69 (10%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
           LP  ++K  G++V +SS A  +   +   Y +SK A+      LA E R      ++K  
Sbjct: 122 LP-ELKKTNGNVVFVSSDACNMYFSSWGAYGSSKAALNHFAMTLANEER------QVKAI 174

Query: 189 SIFPFMVDT 197
           ++ P +VDT
Sbjct: 175 AVAPGIVDT 183

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 71.6 bits (176), Expect = 6e-15
 Identities = 41/106 (38%), Positives = 61/106 (57%), Gaps = 6/106 (5%)

Query: 5   TRITLSHNKLKEIPPGLAN-LVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSS 62
           T++ L  NKL+ +P G+ N L +L  L L  NQ+++LP  +   L +L+ L L  N+L S
Sbjct: 55  TQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS 114

Query: 63  LPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDN 106
           LP G F     L+ L L  N L  +S+P G F  L +L+ ++L DN
Sbjct: 115 LPDGVFDKLTQLKDLRLYQNQL--KSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 40/119 (33%), Positives = 53/119 (44%), Gaps = 11/119 (9%)

Query: 10  SHNKLKEIPPGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLPRG-F 67
                  +P G+        L L  N +++LP      L  L  L LG N+L SLP G F
Sbjct: 15  YSQGRTSVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVF 72

Query: 68  GAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPA----EIGNLKNL 121
                L  L+L+ N L  QSLP G F  L  L+ L L  N  + LP     ++  LK+L
Sbjct: 73  NKLTSLTYLNLSTNQL--QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDL 129

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 4   ITRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIETLPT----SLSSLPKLRILN 54
           +  + L+ N+L+ +P G+   L  L+ L L+ NQ++++P      L+SL  + + +
Sbjct: 102 LKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 157

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 71.2 bits (175), Expect = 7e-15
 Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 7/107 (6%)

Query: 5   TRITLSHNKLKEIPPG--LANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLS 61
           T + L+ N+L  I        L +L  L L  NQ+  +  +       ++ L LG N++ 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 62  SLPRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDN 106
            +    F     L+ L+L  N +    +  G+F  L +L +L L  N
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQI--SCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 4   ITRITLSHNKLKEIPPGL-ANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMN 58
           I  + L  NK+KEI   +   L  L+ L L++NQI  +   S   L  L  LNL  N
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 32/115 (27%)

Query: 13  KLKEIPPGLANLVNLEILTLFNNQIETLPTS--LSSLPKLRILNLGMNRLSSLPRGFGAF 70
            LKEIP  +   ++   L L +N++  + +      LP L  L L  N+L+ +       
Sbjct: 19  GLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE------ 70

Query: 71  PVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI----GNLKNL 121
                             P  F     ++ L LG+N  + +  ++      LK L
Sbjct: 71  ------------------PNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL 107

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} Length = 277

 Score = 72.6 bits (179), Expect = 7e-15
 Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 10/105 (9%)

Query: 129 LPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
            P ++E  R G I+ ISS AG+   P ++ Y ASK AV GL  A A EL    ++S I+ 
Sbjct: 144 APRIIEGGRGGSIILISSAAGMKMQPFMIHYTASKHAVTGLARAFAAEL---GKHS-IRV 199

Query: 188 TSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTIL 232
            S+ P  V+T +     +      ++ +     P L       + 
Sbjct: 200 NSVHPGPVNTPMGSGDMVT-----AVGQAMETNPQLSHVLTPFLP 239

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} Length = 252

 Score = 71.9 bits (177), Expect = 1e-14
 Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 5/92 (5%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
              M+   +G I    + A + G      + ++KF +R + +++A EL    +N  +   
Sbjct: 126 ARLMLAHGQGKIFFTGATASLRGGSGFAAFASAKFGLRAVAQSMARELM--PKNIHVA-H 182

Query: 189 SIFPFMVDTGLCKN--PKIKMNRLSSLPRGFG 218
            I    VDT   +    ++      + P    
Sbjct: 183 LIIDSGVDTAWVRERREQMFGKDALANPDLLM 214

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} Length = 324

 Score = 72.5 bits (178), Expect = 2e-14
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGL-PNLVPYCASKFAVRGLMEALAEELR 177
           LP M  +  G ++ ISS +   G  P L PY A+K A+  +    A EL 
Sbjct: 130 LPHMRRQKHGLLIWISSSSSAGGTPPYLAPYFAAKAAMDAIAVQYARELS 179

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} Length = 299

 Score = 71.9 bits (177), Expect = 2e-14
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 5/76 (6%)

Query: 129 LPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
           +P +M   R G IV  SS+ G+ G  N+  Y ASK  + GLM  +A EL      + I+ 
Sbjct: 161 IPHIMAGKRGGSIVFTSSIGGLRGAENIGNYIASKHGLHGLMRTMALEL---GPRN-IRV 216

Query: 188 TSIFPFMVDTGLCKNP 203
             + P  V T +  N 
Sbjct: 217 NIVCPSSVATPMLLNE 232

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} PDB: 3uwr_A* Length = 286

 Score = 71.5 bits (176), Expect = 2e-14
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 5/76 (6%)

Query: 129 LPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
           +P M+   R G I+  SS+ G+   P+   Y A+K  V GLM A   EL    ++  I+ 
Sbjct: 148 VPHMIAGGRGGSIILTSSVGGLKAYPHTGHYVAAKHGVVGLMRAFGVEL---GQHM-IRV 203

Query: 188 TSIFPFMVDTGLCKNP 203
            S+ P  V T +  N 
Sbjct: 204 NSVHPTHVKTPMLHNE 219

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* Length = 260

 Score = 70.6 bits (174), Expect = 3e-14
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
           +  M E  RG I+ ISS+ G+ G      Y A+KFAVRGL ++ A EL        I+  
Sbjct: 124 VKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPS----GIRVN 179

Query: 189 SIFPFMVDTGLCKN-----PKIKMNRL 210
           SI P +V T +         +  + R 
Sbjct: 180 SIHPGLVKTPMTDWVPEDIFQTALGRA 206

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} Length = 280

 Score = 71.0 bits (175), Expect = 3e-14
 Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 6/98 (6%)

Query: 129 LPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
           +P M+E    G IV +SS AG+   P    Y ASK  +  L   LA EL        I+ 
Sbjct: 148 VPAMIEAGNGGSIVVVSSSAGLKATPGNGHYSASKHGLTALTNTLAIEL---GEYG-IRV 203

Query: 188 TSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEA 225
            SI P+ V+T + +   + M   +  P    +FP +  
Sbjct: 204 NSIHPYSVETPMIEPEAM-MEIFARHPSFVHSFPPMPV 240

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* Length = 254

 Score = 70.2 bits (173), Expect = 4e-14
 Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 7/96 (7%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
           +P M +   G IV ISS AG++GL     Y ASK+ VRGL +  A EL  D    +I+  
Sbjct: 122 IPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVELGTD----RIRVN 177

Query: 189 SIFPFMVDTGLCKN--PKIKMNRLSSLPRG-FGAFP 221
           S+ P M  T +      +       + P G  G  P
Sbjct: 178 SVHPGMTYTPMTAETGIRQGEGNYPNTPMGRVGNEP 213

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 Length = 253

 Score = 70.2 bits (173), Expect = 4e-14
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 133 MEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFP 192
           M++  G I+ ++S++  + +     Y ASK AV  L  A A   R+      I+  SI P
Sbjct: 126 MKETGGSIINMASVSSWLPIEQYAGYSASKAAVSALTRAAALSCRKQ--GYAIRVNSIHP 183

Query: 193 FMVDTGL 199
             + T +
Sbjct: 184 DGIYTPM 190

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* Length = 259

 Score = 70.1 bits (172), Expect = 5e-14
 Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 8/85 (9%)

Query: 117 NLKNLQIILETFLPDMMEKN--RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAE 174
           NL ++  +    L    +       +V ISS+  +        YCA K A   L + LA 
Sbjct: 126 NLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPYKGWGLYCAGKAARDMLYQVLAA 185

Query: 175 ELREDARNSKIKFTSIFPFMVDTGL 199
           E         ++  S  P  +D  +
Sbjct: 186 E------EPSVRVLSYAPGPLDNDM 204

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} Length = 269

 Score = 69.5 bits (171), Expect = 8e-14
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
           +P M+    G I+ I+S+       N   Y  SK A+ GL  ++A +    A    I+  
Sbjct: 124 IPVMLAIGHGSIINIASVQSYAATKNAAAYVTSKHALLGLTRSVAIDY---APK--IRCN 178

Query: 189 SIFPFMVDTGL 199
           ++ P  + T +
Sbjct: 179 AVCPGTIMTPM 189

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 Length = 270

 Score = 68.7 bits (169), Expect = 1e-13
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIF 191
            + K++G+++ ISS+ G +G    VPY A+K AV  + +ALA +         ++   I 
Sbjct: 128 YLRKSQGNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALALDESPY----GVRVNCIS 183

Query: 192 PFMVDTGL 199
           P  + T L
Sbjct: 184 PGNIWTPL 191

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} Length = 251

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 4/86 (4%)

Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIF 191
            +    G  V   + A +     ++ Y A+K A   +++ LA E              I 
Sbjct: 132 KLLNQGGLFVLTGASAALNRTSGMIAYGATKAATHHIIKDLASENGGLPAG--STSLGIL 189

Query: 192 PFMVDTGLCKN--PKIKMNRLSSLPR 215
           P  +DT   +        +  + L  
Sbjct: 190 PVTLDTPTNRKYMSDANFDDWTPLSE 215

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} Length = 277

 Score = 68.3 bits (168), Expect = 2e-13
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
            P M+E+  G IV +SS+AG V +     Y  SK  +  L    A ELR       I+  
Sbjct: 146 APRMIERGGGAIVNLSSLAGQVAVGGTGAYGMSKAGIIQLSRITAAELRSS----GIRSN 201

Query: 189 SIFPFMVDTGL 199
           ++ P  VDT +
Sbjct: 202 TLLPAFVDTPM 212

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 65.9 bits (161), Expect = 2e-13
 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 9   LSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFG 68
            S +   ++         LE L+  N  + ++  +L  L KL+ L L  NR+S       
Sbjct: 26  NSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLA 84

Query: 69  -AFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDN 106
              P L  L+L+ N + + S       LE L++L L + 
Sbjct: 85  EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 5/105 (4%)

Query: 20  GLANLVNLEILTLFNNQ--IETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLD 77
                 +++ L L N++     L        +L  L+     L+S+         L+ L+
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA-NLPKLNKLKKLE 70

Query: 78  LTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 122
           L+ N +    L         L  L L  N  + L + I  LK L+
Sbjct: 71  LSDNRV-SGGLEVLAEKCPNLTHLNLSGNKIKDL-STIEPLKKLE 113

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 7/81 (8%)

Query: 4   ITRITLSHNKLKEIPPGLA-NLVNLEILTLFNNQIETLPT--SLSSLPKLRILNLGMNRL 60
           + ++ LS N++      LA    NL  L L  N+I+ L T   L  L  L+ L+L    +
Sbjct: 66  LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

Query: 61  SSLP--RG--FGAFPVLEVLD 77
           ++L   R   F   P L  LD
Sbjct: 126 TNLNDYRENVFKLLPQLTYLD 146

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A Length = 252

 Score = 67.5 bits (166), Expect = 3e-13
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
           LP +++ + G +V  SS  G  G  N   Y ASKFA  G+M+ LA+E +      +++  
Sbjct: 136 LPLLLKSDAGSLVFTSSSVGRQGRANWGAYAASKFATEGMMQVLADEYQ-----QRLRVN 190

Query: 189 SIFPFMVDTGLCKN--PKIKMNRL 210
            I P    T +  +  P     +L
Sbjct: 191 CINPGGTRTAMRASAFPTEDPQKL 214

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 65.9 bits (161), Expect = 3e-13
 Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 2/99 (2%)

Query: 9   LSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFG 68
              +   +I    A  VNLE L+L N  + ++ ++L  LPKL+ L L  NR+        
Sbjct: 33  NCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLA 91

Query: 69  -AFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDN 106
              P L  L+L+ N L + S       LE L++L L + 
Sbjct: 92  EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 9/117 (7%)

Query: 6   RITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPR 65
           RI L        P  +  LV    L    +    +    +    L  L+L    L S+  
Sbjct: 13  RIHLELRNRT--PAAVRELV----LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS- 65

Query: 66  GFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 122
                P L+ L+L+ N +    L      L  L  L L  N  + + + +  LK L+
Sbjct: 66  NLPKLPKLKKLELSENRI-FGGLDMLAEKLPNLTHLNLSGNKLKDI-STLEPLKKLE 120

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 7/92 (7%)

Query: 1   MLYITRITLSHNKLKEIPPGLA-NLVNLEILTLFNNQIETLPT--SLSSLPKLRILNLGM 57
           +  + ++ LS N++      LA  L NL  L L  N+++ + T   L  L  L+ L+L  
Sbjct: 70  LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129

Query: 58  NRLSSLP--RG--FGAFPVLEVLDLTYNNLNE 85
             +++L   R   F   P L  LD       E
Sbjct: 130 CEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A Length = 259

 Score = 67.5 bits (166), Expect = 4e-13
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 129 LPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
              M+ + R G I+ ++S AG  G   +  YCA+K AV  L ++   +L
Sbjct: 125 ARQMIAQGRGGKIINMASQAGRRGEALVAIYCATKAAVISLTQSAGLDL 173

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A Length = 264

 Score = 67.6 bits (166), Expect = 4e-13
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
           +P M+      IV ISS+   +   N   Y  SK AV GL +++A +    A    ++  
Sbjct: 117 IPYMIRSRDPSIVNISSVQASIITKNASAYVTSKHAVIGLTKSIALDY---APL--LRCN 171

Query: 189 SIFPFMVDTGL 199
           ++ P  +DT L
Sbjct: 172 AVCPATIDTPL 182

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* Length = 278

 Score = 67.6 bits (166), Expect = 4e-13
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNL-VPYCASKFAVRGLMEALAEELREDARNSKIKF 187
              M+   +G IV  +S++       +   Y A+K AV GL  +L  EL E      I+ 
Sbjct: 137 ARVMIPAKKGSIVFTASISSFTAGEGVSHVYTATKHAVLGLTTSLCTELGEY----GIRV 192

Query: 188 TSIFPFMVDTGL 199
             + P++V + L
Sbjct: 193 NCVSPYIVASPL 204

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} Length = 258

 Score = 67.2 bits (165), Expect = 4e-13
 Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 132 MMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
             E    G I+  +S+A I G P L  Y  +KFAVRGL +A A+EL
Sbjct: 127 FDELGVKGKIINAASIAAIQGFPILSAYSTTKFAVRGLTQAAAQEL 172

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} Length = 281

 Score = 67.5 bits (166), Expect = 5e-13
 Identities = 18/48 (37%), Positives = 26/48 (54%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
            P M+++N G IV +SSM G         Y +SK+ V GL +  A +L
Sbjct: 142 APGMIKRNYGRIVTVSSMLGHSANFAQASYVSSKWGVIGLTKCAAHDL 189

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* Length = 241

 Score = 67.0 bits (164), Expect = 5e-13
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 4/81 (4%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           ++    I        +  K  G +    + A + G P ++ Y  +K AV  L ++LA + 
Sbjct: 108 SIWTSTISSHLATKHL--KEGGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKN 165

Query: 177 REDARNSKIKFTSIFPFMVDT 197
                       ++ P  +DT
Sbjct: 166 SGMPSG--AAAIAVLPVTLDT 184

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 65.4 bits (160), Expect = 5e-13
 Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 2/101 (1%)

Query: 7   ITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRG 66
           + L   K+  I    A L   + +   +N+I  L      L +L+ L +  NR+  +  G
Sbjct: 24  LDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG-FPLLRRLKTLLVNNNRICRIGEG 82

Query: 67  FG-AFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDN 106
              A P L  L LT N+L E         L++L  L +  N
Sbjct: 83  LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 62.8 bits (153), Expect = 5e-12
 Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 6/115 (5%)

Query: 9   LSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFG 68
           L+   +++      N V    L L   +I  +    ++L +   ++   N +  L  GF 
Sbjct: 4   LTAELIEQAA-QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFP 61

Query: 69  AFPVLEVLDLTYNNLNEQSLPGNFF-MLETLRALYLGDNDFEVLPAEIGNLKNLQ 122
               L+ L +  N +    +       L  L  L L +N    L  ++  L +L+
Sbjct: 62  LLRRLKTLLVNNNRI--CRIGEGLDQALPDLTELILTNNSLVEL-GDLDPLASLK 113

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 7/84 (8%)

Query: 9   LSHNKLKEIPPGLA-NLVNLEILTLFNNQIETLPT--SLSSLPKLRILNLGMNRLSSLP- 64
           +++N++  I  GL   L +L  L L NN +  L     L+SL  L  L +  N +++   
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 130

Query: 65  -RGF--GAFPVLEVLDLTYNNLNE 85
            R +     P + VLD     L E
Sbjct: 131 YRLYVIYKVPQVRVLDFQKVKLKE 154

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 Length = 256

 Score = 66.8 bits (164), Expect = 6e-13
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 129 LPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           +    ++   G I+   S AG VG P L  Y +SKFAVRGL +  A +L
Sbjct: 122 VEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVRGLTQTAARDL 170

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A Length = 251

 Score = 66.7 bits (164), Expect = 6e-13
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)

Query: 129 LPDMMEKNRGH-IVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
           +  M  K  G  I+ +SS+ G VG P+L  Y ASK AVR + ++ A +      +  ++ 
Sbjct: 125 IQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALDCALKDYD--VRV 182

Query: 188 TSIFPFMVDTGL 199
            ++ P  + T L
Sbjct: 183 NTVHPGYIKTPL 194

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* Length = 254

 Score = 66.9 bits (164), Expect = 6e-13
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 7/74 (9%)

Query: 129 LPDMMEKNRGH---IVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKI 185
           L    ++  G    I  I S+ G   +  +  Y ASK AV     +LA+        + +
Sbjct: 119 LDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSASKAAVVSFTNSLAKLA----PITGV 174

Query: 186 KFTSIFPFMVDTGL 199
              SI P +  T L
Sbjct: 175 TAYSINPGITRTPL 188

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} Length = 281

 Score = 67.2 bits (165), Expect = 7e-13
 Identities = 17/48 (35%), Positives = 23/48 (47%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
             +M+    G  VGISS+A          Y  +K AV  LM+  A+EL
Sbjct: 135 AREMVRGGGGSFVGISSIAASNTHRWFGAYGVTKSAVDHLMQLAADEL 182

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} Length = 250

 Score = 66.7 bits (164), Expect = 7e-13
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 8/92 (8%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
           LP M+ +  G IV I+S+A +V  P    Y  SK AV  L +++A +    A  S I+  
Sbjct: 126 LPHMLLQGAGVIVNIASVASLVAFPGRSAYTTSKGAVLQLTKSVAVDY---AG-SGIRCN 181

Query: 189 SIFPFMVDT----GLCKNPKIKMNRLSSLPRG 216
           ++ P M++T         P+++   L+ +P+ 
Sbjct: 182 AVCPGMIETPMTQWRLDQPELRDQVLARIPQK 213

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} Length = 266

 Score = 66.8 bits (164), Expect = 8e-13
 Identities = 13/49 (26%), Positives = 22/49 (44%)

Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
            +P M     G IV ++S  G+   P    YC +K A+  L + +  + 
Sbjct: 136 AIPLMAAAGGGAIVNVASCWGLRPGPGHALYCLTKAALASLTQCMGMDH 184

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} Length = 317

 Score = 67.3 bits (165), Expect = 9e-13
 Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 129 LPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           LP M+E+ + G ++ +SS  G+ G P    Y ASK  V+GLM +LA E+
Sbjct: 178 LPSMIERGQGGSVIFVSSTVGLRGAPGQSHYAASKHGVQGLMLSLANEV 226

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} Length = 277

 Score = 66.4 bits (163), Expect = 1e-12
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
           +P M     G I+  +S      + +   Y ASK A+  L  A+A +    A+   I+  
Sbjct: 144 IPVMRRNGGGSIINTTSYTATSAIADRTAYVASKGAISSLTRAMAMDH---AK-EGIRVN 199

Query: 189 SIFPFMVDTGL 199
           ++ P  +D+  
Sbjct: 200 AVAPGTIDSPY 210

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* Length = 265

 Score = 66.0 bits (162), Expect = 1e-12
 Identities = 13/49 (26%), Positives = 26/49 (53%)

Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           FLP +  +    IV ++S+      P++V   A++  V+ L+ ++A E 
Sbjct: 129 FLPQLESRADAAIVCVNSLLASQPEPHMVATSAARAGVKNLVRSMAFEF 177

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* Length = 244

 Score = 66.0 bits (162), Expect = 1e-12
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 128 FLPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
               ++ +   G IV +SS      + N   YC++K A+  L + +A EL
Sbjct: 118 VARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALEL 167

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 Length = 262

 Score = 66.1 bits (162), Expect = 1e-12
 Identities = 20/48 (41%), Positives = 27/48 (56%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
              M+ +N G IV  +SMAG+ G PN+  Y  SK A+  L E  A +L
Sbjct: 128 SRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDL 175

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 Length = 244

 Score = 66.0 bits (162), Expect = 1e-12
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 128 FLPDMME-KNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
              DM+     G IV +SSM   V  PNL+ Y ++K A+  L +A+A EL
Sbjct: 118 VARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMEL 167

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 Length = 267

 Score = 65.6 bits (161), Expect = 2e-12
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
           L  M E+  G +V  +S+ GI G+ N   Y A+K  V GL    A E         I+  
Sbjct: 136 LKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAKHGVVGLTRNSAVEYGRY----GIRIN 191

Query: 189 SIFPFMVDTGL 199
           +I P  + T +
Sbjct: 192 AIAPGAIWTPM 202

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} Length = 247

 Score = 65.2 bits (160), Expect = 2e-12
 Identities = 25/69 (36%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
           LP +       I   SS  G  G  N   Y  SKFA  GLM+ LA+EL E      ++  
Sbjct: 138 LPLLKRSEDASIAFTSSSVGRKGRANWGAYGVSKFATEGLMQTLADEL-EGVTA--VRAN 194

Query: 189 SIFPFMVDT 197
           SI P    T
Sbjct: 195 SINPGATRT 203

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* Length = 281

 Score = 65.7 bits (161), Expect = 2e-12
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIF 191
            +  +RG +V   S AG         Y A+K AV GL+  +A EL        ++   + 
Sbjct: 129 ALVSSRGSVVFTISNAGFYPNGGGPLYTATKHAVVGLVRQMAFELA-----PHVRVNGVA 183

Query: 192 PFMVDTGL 199
           P  ++T L
Sbjct: 184 PGGMNTDL 191

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} Length = 266

 Score = 65.3 bits (160), Expect = 3e-12
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 128 FLPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
               M+     G I+ ++S A +  LP+   YC SK  +    + LA EL
Sbjct: 140 VGKAMVAAGEGGAIITVASAAALAPLPDHYAYCTSKAGLVMATKVLAREL 189

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} Length = 261

 Score = 64.9 bits (159), Expect = 3e-12
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 8/76 (10%)

Query: 128 FLPDMMEKNRGH----IVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNS 183
            +P   E         I+ ++S       PNL  Y A+K  V  + +ALA EL   A   
Sbjct: 126 LIPHFKENGAKGQECVILNVASTGAGRPRPNLAWYNATKGWVVSVTKALAIEL---APA- 181

Query: 184 KIKFTSIFPFMVDTGL 199
           KI+  ++ P   +T L
Sbjct: 182 KIRVVALNPVAGETPL 197

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} Length = 272

 Score = 65.3 bits (160), Expect = 3e-12
 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 6/73 (8%)

Query: 129 LPDMMEKNR--GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIK 186
              M  +    G I+   S++     P   PY A+K A+ GL ++ + + R    +  I 
Sbjct: 146 FRVMKAQEPRGGRIINNGSISATSPRPYSAPYTATKHAITGLTKSTSLDGR--VHD--IA 201

Query: 187 FTSIFPFMVDTGL 199
              I     DT +
Sbjct: 202 CGQIDIGNADTPM 214

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} Length = 244

 Score = 64.5 bits (158), Expect = 3e-12
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
              ++  K    IV   S    +  PN   Y  SK A+  + ++LA +L
Sbjct: 112 LENNL--KVGASIVFNGSDQCFIAKPNSFAYTLSKGAIAQMTKSLALDL 158

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* Length = 263

 Score = 64.9 bits (159), Expect = 4e-12
 Identities = 12/49 (24%), Positives = 22/49 (44%)

Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
            +P M  +  G I+  +S+  +  L     Y  +K A+    + LA E+
Sbjct: 127 LVPGMRARGGGAIIHNASICAVQPLWYEPIYNVTKAALMMFSKTLATEV 175

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 Length = 273

 Score = 64.5 bits (158), Expect = 5e-12
 Identities = 16/49 (32%), Positives = 28/49 (57%)

Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
             P +     G+++ +SS+AG   LP++  Y ASK A+  + ++LA E 
Sbjct: 141 AYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLACEW 189

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} Length = 263

 Score = 64.1 bits (157), Expect = 5e-12
 Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 129 LPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
               +  N  G IV  +S+A  VG P L  Y ASKFAV G  +ALA E+
Sbjct: 129 CRHFLASNTKGVIVNTASLAAKVGAPLLAHYSASKFAVFGWTQALAREM 177

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* Length = 260

 Score = 64.0 bits (157), Expect = 6e-12
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           +P+M ++  G ++ +SS+      PNL PY  SK A+ GL + LA EL
Sbjct: 135 VPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAVEL 182

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} Length = 271

 Score = 64.1 bits (157), Expect = 6e-12
 Identities = 12/48 (25%), Positives = 19/48 (39%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           +P ++    G IV ISS            Y  +K A+  L   +A + 
Sbjct: 130 IPRLISAGGGAIVNISSATAHAAYDMSTAYACTKAAIETLTRYVATQY 177

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* Length = 255

 Score = 63.7 bits (156), Expect = 7e-12
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
             P+M +   G I+ I+SMA      N+  Y +SK A   L+  +A +L
Sbjct: 129 VAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDL 177

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* Length = 260

 Score = 63.3 bits (155), Expect = 1e-11
 Identities = 17/49 (34%), Positives = 26/49 (53%)

Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
             P +    RG++V ISS++G + +P    Y A+K A+  L   LA E 
Sbjct: 129 AHPFLKASERGNVVFISSVSGALAVPYEAVYGATKGAMDQLTRCLAFEW 177

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 Length = 256

 Score = 63.3 bits (155), Expect = 1e-11
 Identities = 14/48 (29%), Positives = 23/48 (47%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
             +M +   G IV ++S+ G+        Y ASK  +  L  +LA +L
Sbjct: 120 AREMRKVGGGAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSLALDL 167

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 61.5 bits (150), Expect = 1e-11
 Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 7/105 (6%)

Query: 5   TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSSL 63
           T +   + +L  +P G+    + + L L NNQI  L   +   L  L+ L    N+L+++
Sbjct: 15  TLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI 72

Query: 64  PRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDN 106
           P G F     L  LDL  N+L  +S+P G F  L++L  +YL +N
Sbjct: 73  PTGVFDKLTQLTQLDLNDNHL--KSIPRGAFDNLKSLTHIYLYNN 115

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 61.5 bits (150), Expect = 1e-11
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 7/105 (6%)

Query: 5   TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSSL 63
           T +  S   L  +P G+      ++L L++NQI  L   +   L +L  L+L  N+L+ L
Sbjct: 12  TTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL 69

Query: 64  PRG-FGAFPVLEVLDLTYNNLNEQSLP-GNFFMLETLRALYLGDN 106
           P G F     L  L L  N L  +S+P G F  L++L  ++L +N
Sbjct: 70  PAGVFDKLTQLTQLSLNDNQL--KSIPRGAFDNLKSLTHIWLLNN 112

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 236

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           ++ +  I  +     +  K  G +    + A +   P+++ Y  +K AV  L  +LA + 
Sbjct: 104 SVWSSAIAAKLATTHL--KPGGLLQLTGAAAAMGPTPSMIGYGMAKAAVHHLTSSLAAKD 161

Query: 177 REDARNSKIKFTSIFPFMVDTGLCKNPK 204
                N      +I P  +DT +  N K
Sbjct: 162 SGLPDN--SAVLTIMPVTLDTPM--NRK 185

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} Length = 278

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 5/53 (9%)

Query: 129 LPDMMEKNR-GHIVGISSMAGIVGL----PNLVPYCASKFAVRGLMEALAEEL 176
           +P ++++   G IV ISS AG+ G+    P  V Y A+K  V GLM   A  L
Sbjct: 141 IPTLVKQGTGGSIVLISSSAGLAGVGSADPGSVGYVAAKHGVVGLMRVYANLL 193

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} Length = 254

 Score = 62.5 bits (153), Expect = 2e-11
 Identities = 16/48 (33%), Positives = 27/48 (56%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           +P M+++ +G IV  +S+AGI G     PY  +K  + GL  ++A   
Sbjct: 128 IPIMLKQGKGVIVNTASIAGIRGGFAGAPYTVAKHGLIGLTRSIAAHY 175

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} Length = 244

 Score = 61.8 bits (151), Expect = 3e-11
 Identities = 10/48 (20%), Positives = 20/48 (41%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           +  +       ++ I+S  G   L     Y  ++ A   L+E+ A+ L
Sbjct: 118 IAPLRAAGGASVIFITSSVGKKPLAYNPLYGPARAATVALVESAAKTL 165

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 Length = 246

 Score = 61.4 bits (150), Expect = 4e-11
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 5/73 (6%)

Query: 128 FLPDMMEKNRGHIVGISSMAGIV-GLPNLVPYCASKFAVRGLMEALAEELREDARNSKIK 186
           FLP M+ +  G+I+ +SS+A  V G+ N   Y  +K AV GL +++A +     +   I+
Sbjct: 116 FLPKMLAQKSGNIINMSSVASSVKGVVNRCVYSTTKAAVIGLTKSVAADF---IQQ-GIR 171

Query: 187 FTSIFPFMVDTGL 199
              + P  VDT  
Sbjct: 172 CNCVCPGTVDTPS 184

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} Length = 264

 Score = 61.4 bits (150), Expect = 4e-11
 Identities = 12/45 (26%), Positives = 23/45 (51%)

Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
            +E+++G +V ++SM           Y  +K A+  + + LA EL
Sbjct: 134 ALEESKGAVVNVNSMVVRHSQAKYGAYKMAKSALLAMSQTLATEL 178

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} Length = 281

 Score = 61.5 bits (150), Expect = 5e-11
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 129 LPDMMEKNR--GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRED 179
              M  +    G I+   S++     PN  PY A+K A+ GL ++ A + R  
Sbjct: 155 FRMMKAQTPRGGRIINNGSISAQTPRPNSAPYTATKHAITGLTKSTALDGRMH 207

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* Length = 258

 Score = 61.0 bits (149), Expect = 6e-11
 Identities = 27/104 (25%), Positives = 38/104 (36%), Gaps = 8/104 (7%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           N K L    +     M +   GHIV ISS+  I  L N      SK A+  L   LA EL
Sbjct: 113 NAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRYLENYTTVGVSKAALEALTRYLAVEL 172

Query: 177 REDARNSKIKFTSIFPFMVDT----GLCKNPKIKMNRLSSLPRG 216
               +   I   ++    +DT           +  +   + P G
Sbjct: 173 S--PKQ--IIVNAVSGGAIDTDALKHFPNREDLLEDARQNTPAG 212

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} Length = 273

 Score = 61.0 bits (149), Expect = 7e-11
 Identities = 24/60 (40%), Positives = 30/60 (50%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           NL    ++  +F   M+    G IV I+SM    G  N+  Y ASK AV GL  ALA E 
Sbjct: 137 NLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQGGRNVAAYAASKHAVVGLTRALASEW 196

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} Length = 281

 Score = 61.1 bits (149), Expect = 8e-11
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           +P M +K  G I+ I+S  G+V  P    Y A+K  + GL + +A E+
Sbjct: 147 IPPMKKKGWGRIINIASAHGLVASPFKSAYVAAKHGIMGLTKTVALEV 194

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} Length = 346

 Score = 61.0 bits (148), Expect = 1e-10
 Identities = 14/84 (16%), Positives = 33/84 (39%), Gaps = 8/84 (9%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVG--LPNLVPYCASKFAVRGLMEALAE 174
           N +   +  +  +P + +    HI+ IS    +          Y  +K+ +   +  +AE
Sbjct: 160 NTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPVWFKQHCAYTIAKYGMSMYVLGMAE 219

Query: 175 ELREDARNSKIKFTSIFP-FMVDT 197
           E + +     I   +++P   + T
Sbjct: 220 EFKGE-----IAVNALWPKTAIHT 238

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* Length = 261

 Score = 60.2 bits (147), Expect = 1e-10
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 9/93 (9%)

Query: 129 LPDMME-KNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
           +   +E   +G ++ +SS+   +  P  V Y ASK  ++ + E LA E    A    I+ 
Sbjct: 128 IKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEY---AP-KGIRV 183

Query: 188 TSIFPFMVDT----GLCKNPKIKMNRLSSLPRG 216
            +I P  ++T        +P+ + +  S +P G
Sbjct: 184 NNIGPGAINTPINAEKFADPEQRADVESMIPMG 216

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A Length = 266

 Score = 60.2 bits (147), Expect = 1e-10
 Identities = 16/48 (33%), Positives = 24/48 (50%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
            P +     G+I+ +SS+AG+V       Y A+K A+  L   LA E 
Sbjct: 135 HPLLKASGCGNIIFMSSIAGVVSASVGSIYSATKGALNQLARNLACEW 182

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} Length = 267

 Score = 59.9 bits (146), Expect = 1e-10
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           +L  M+E+  G ++ I+S A I+    +  Y A+K     L  +LAE  
Sbjct: 127 YLKKMIERKEGRVIFIASEAAIMPSQEMAHYSATKTMQLSLSRSLAELT 175

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* Length = 249

 Score = 59.8 bits (146), Expect = 2e-10
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           +P M     G I+ ++S    + +     Y ++K A  G   ALA +L
Sbjct: 125 VPGMKRNGWGRIINLTSTTYWLKIEAYTHYISTKAANIGFTRALASDL 172

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} Length = 260

 Score = 59.9 bits (146), Expect = 2e-10
 Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 5/87 (5%)

Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
             P +       IV IS      G    + YCA+K  +  L  + A      A    +K 
Sbjct: 140 CEPLLTASEVADIVHISDDVTRKGSSKHIAYCATKAGLESLTLSFAARF---A--PLVKV 194

Query: 188 TSIFPFMVDTGLCKNPKIKMNRLSSLP 214
             I P ++      +   + N L+   
Sbjct: 195 NGIAPALLMFQPKDDAAYRANALAKSA 221

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} Length = 256

 Score = 59.8 bits (146), Expect = 2e-10
 Identities = 17/48 (35%), Positives = 24/48 (50%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
            P M +   G I+ ISSMAG      +  Y +SK AV  L   +A ++
Sbjct: 131 APHMQKAGGGAILNISSMAGENTNVRMASYGSSKAAVNHLTRNIAFDV 178

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} Length = 273

 Score = 59.5 bits (145), Expect = 2e-10
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
           LP +       +V   S AG  G P    Y ASK A+R        +L++      I+  
Sbjct: 146 LPLL--ARGSSVVLTGSTAGSTGTPAFSVYAASKAALRSFARNWILDLKDR----GIRIN 199

Query: 189 SIFPFMVDTGL 199
           ++ P   +T  
Sbjct: 200 TLSPGPTETTG 210

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} Length = 287

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 17/86 (19%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGL-----------PNLVPYCASKFAVRGLMEALAEELR 177
           LP +       I+   S+AG++             P    Y  +K  V      LA +L 
Sbjct: 140 LPYLTS--GASIITTGSVAGLIAAAQPPGAGGPQGPGGAGYSYAKQLVDSYTLQLAAQL- 196

Query: 178 EDARNSKIKFTSIFPFMVDTGLCKNP 203
             A  S I+   I P  V+T +  + 
Sbjct: 197 --APQS-IRANVIHPTNVNTDMLNSA 219

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} Length = 280

 Score = 59.5 bits (145), Expect = 3e-10
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 129 LPDMMEKNRGHIVGISSMAG-IVGLPNLVPYCASKFAVRGLMEALAEEL 176
           +P +     G +   SS  G   G   + PY ASK  + GL++ALA EL
Sbjct: 129 VPAIAALGGGSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLVQALAVEL 177

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* Length = 254

 Score = 59.1 bits (144), Expect = 3e-10
 Identities = 13/60 (21%), Positives = 24/60 (40%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
                  ++      M ++  GHI+ I+S         L  Y +++     L  AL++EL
Sbjct: 104 LQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGACTLANALSKEL 163

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A Length = 255

 Score = 59.1 bits (144), Expect = 3e-10
 Identities = 18/48 (37%), Positives = 26/48 (54%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           LP M  +N G I+ I+S+ G+VG      Y A+K  V GL + +  E 
Sbjct: 122 LPGMRARNWGRIINIASVHGLVGSTGKAAYVAAKHGVVGLTKVVGLET 169

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} Length = 260

 Score = 58.3 bits (142), Expect = 6e-10
 Identities = 14/60 (23%), Positives = 25/60 (41%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
             ++   +       M+EK  G +V I S+  +    +L      +  V G++  LA EL
Sbjct: 116 LARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLRPWQDLALSNIMRLPVIGVVRTLALEL 175

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} Length = 260

 Score = 57.9 bits (141), Expect = 7e-10
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 128 FLPDMMEKNRGHIVGISSMAGIVG--LPNLVPYCASKFAVRGLMEALAEEL 176
               M+E+ +G IV I SM+G++         Y ASK  V   + +LA E 
Sbjct: 133 VGRIMLEQKQGVIVAIGSMSGLIVNRPQQQAAYNASKAGVHQYIRSLAAEW 183

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} Length = 283

 Score = 58.0 bits (141), Expect = 8e-10
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 129 LPDMMEKNRGHIVGISSMAGI--VGLPNLVPYCASKFAVRGLMEALAEEL 176
           +P + ++  G IV +SS+ G      P    Y A+K A   +++ LA EL
Sbjct: 149 VPYLKQRGGGAIVVVSSINGTRTFTTPGATAYTATKAAQVAIVQQLALEL 198

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} Length = 253

 Score = 57.1 bits (139), Expect = 1e-09
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
              M ++  G IV  SS A  +       Y  +K  + GL + L+ EL
Sbjct: 132 YKKMTKRGGGAIVNQSSTAAWLYSNY---YGLAKVGINGLTQQLSREL 176

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} Length = 257

 Score = 57.1 bits (139), Expect = 1e-09
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 9/91 (9%)

Query: 132 MMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSI 190
            +EK   G+I+ + +       P ++   A+K  V  + + LA E     R   I+  +I
Sbjct: 129 WIEKGIKGNIINMVATYAWDAGPGVIHSAAAKAGVLAMTKTLAVEW---GRKYGIRVNAI 185

Query: 191 FP-F----MVDTGLCKNPKIKMNRLSSLPRG 216
            P           L  + ++    + S+P G
Sbjct: 186 APGPIERTGGADKLWISEEMAKRTIQSVPLG 216

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 Length = 249

 Score = 56.8 bits (138), Expect = 1e-09
 Identities = 19/60 (31%), Positives = 33/60 (55%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
              N+  I+  +LP M EK  G IV I+S + I  + NL    +++ A+ G ++ L+ E+
Sbjct: 112 LFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPIENLYTSNSARMALTGFLKTLSFEV 171

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} Length = 274

 Score = 56.8 bits (138), Expect = 2e-09
 Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVG--LPNLVPYCASKFAVRGLMEALAEELRED 179
           LP +++    HI+ ++    +          Y  +K  +  +   LA E    
Sbjct: 133 LPHLLQAPNPHILTLAPPPSLNPAWWGAHTGYTLAKMGMSLVTLGLAAEFGPQ 185

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* Length = 276

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 6/89 (6%)

Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIF 191
                   +V +      + LP    Y  +K A+ GL  A A EL    R+  I+  ++ 
Sbjct: 156 AWRSRNLSVVNLCDAMTDLPLPGFCVYTMAKHALGGLTRAAALELA--PRH--IRVNAVA 211

Query: 192 PFMVDTGLCKNPKIKMNRLSSLP--RGFG 218
           P +         + +      +P  +   
Sbjct: 212 PGLSLLPPAMPQETQEEYRRKVPLGQSEA 240

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} Length = 250

 Score = 56.8 bits (138), Expect = 2e-09
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           +     +  G IV ++S A       +  Y ASK A++ L  ++  EL
Sbjct: 117 MNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALSVGLEL 164

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 278

 Score = 56.8 bits (138), Expect = 2e-09
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 132 MMEKNRGHIVGISSMA-GIVGLPNLVPYCASKFAVRGLMEALAEEL 176
            +   +G IV ISS+A G+   P+   Y  +K A+       A +L
Sbjct: 135 HLSSTKGEIVNISSIASGLHATPDFPYYSIAKAAIDQYTRNTAIDL 180

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* Length = 254

 Score = 56.4 bits (137), Expect = 2e-09
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLP--NLVPYCASKFAVRGLMEALAEEL 176
           F   M+ +  G IV + SM+G +         Y ASK AV  L  ALA E 
Sbjct: 127 FGRAMVARGAGAIVNLGSMSGTIVNRPQFASSYMASKGAVHQLTRALAAEW 177

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* Length = 260

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 17/48 (35%), Positives = 24/48 (50%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           LP M ++  G I+ I+S  G+V   N   Y A+K  V G  +  A E 
Sbjct: 126 LPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHGVVGFTKVTALET 173

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A Length = 255

 Score = 56.4 bits (137), Expect = 2e-09
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFT 188
            P +  +  G IV  SS+A   G P +  Y ASK A+      LA EL        I+  
Sbjct: 125 TPLI--REGGSIVFTSSVADEGGHPGMSVYSASKAALVSFASVLAAELLPR----GIRVN 178

Query: 189 SIFPFMVDT 197
           S+ P  +DT
Sbjct: 179 SVSPGFIDT 187

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 Length = 267

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 9/74 (12%)

Query: 129 LPDMMEKNRGH---IVGISSMAGIVGLPNLVPYCASKFAVRGL--MEALAEELREDARNS 183
           L  M ++N G    I+ +SS+AG++ +     YCASK  + G     ALA  L       
Sbjct: 121 LDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANL--MNSG- 177

Query: 184 KIKFTSIFPFMVDT 197
            ++  +I P  V+T
Sbjct: 178 -VRLNAICPGFVNT 190

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 Length = 267

 Score = 56.4 bits (137), Expect = 2e-09
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAG-IVGLPNLVPYCASKFAVRGLMEALAEE 175
           NL     +       + E +   I+ I S+    V +PN+  Y ASK  V  L +ALA+E
Sbjct: 130 NLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASKGGVASLTKALAKE 189

Query: 176 L 176
            
Sbjct: 190 W 190

>1cc1_S Hydrogenase (small subunit); NI-Fe-Se hydrogenase, oxidoreductase; 2.15A {Desulfomicrobium baculatum} SCOP: e.19.1.1 Length = 283

 Score = 56.6 bits (136), Expect = 2e-09
 Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 278 QIMLEPRWVISMGSCANGGGYYHYSYSV--------VRGCDRIIPVDIYVPGCPPTAEAL 329
            +  +    +++G+C+  GG      +V            ++I  + + VPGCPP  + +
Sbjct: 112 DLAPKSLATVAVGTCSAYGGIPAAEGNVTGSKSVRDFFADEKIEKLLVNVPGCPPHPDWM 171

Query: 330 MYGILQLQKKVK 341
           +  ++     V 
Sbjct: 172 VGTLVAAWSHVL 183

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} Length = 255

 Score = 55.9 bits (136), Expect = 3e-09
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 128 FLPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
               M+ +N  G I+ I S+      P + PY A+K  ++ L  ++A E 
Sbjct: 128 AAKRMIARNSGGKIINIGSLTSQAARPTVAPYTAAKGGIKMLTCSMAAEW 177

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 280

 Score = 56.1 bits (136), Expect = 3e-09
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 132 MMEKNRGHIVGISSM-AGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
            +  ++G IV +SS+ AG    P+ + Y  +K A+     + A +L
Sbjct: 135 HLVASKGEIVNVSSIVAGPQAQPDFLYYAIAKAALDQYTRSTAIDL 180

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} Length = 285

 Score = 56.1 bits (136), Expect = 3e-09
 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 129 LPDMMEKNRGHIVGISSMAGI-VGLPNLVPYCASKFAVRGLMEALAEELRED 179
           +P M  ++  HI+ +S    +        PY  +K+ +      +AEELR+ 
Sbjct: 136 IPHMKGRDNPHILTLSPPIRLEPKWLRPTPYMMAKYGMTLCALGIAEELRDA 187

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A Length = 239

 Score = 55.6 bits (135), Expect = 3e-09
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNL--VPYCASKFAVRGLMEALAEEL 176
             P M E   G ++ I S+        +    Y  +K A+ GL  ALA+E 
Sbjct: 112 AAPHMAEAGWGRVLFIGSVTTFTAGGPVPIPAYTTAKTALLGLTRALAKEW 162

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} Length = 266

 Score = 55.6 bits (135), Expect = 5e-09
 Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 129 LPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           L      +  G IV  +S+ G     +   Y A+K  V  L    A E 
Sbjct: 144 LRYFRGVDHGGVIVNNASVLGWRAQHSQSHYAAAKAGVMALTRCSAIEA 192

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} Length = 202

 Score = 54.6 bits (132), Expect = 5e-09
 Identities = 13/106 (12%), Positives = 34/106 (32%), Gaps = 15/106 (14%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
            L     ++   +  + +  +G     + +     +        +  AV    ++ A E+
Sbjct: 89  KLGGQINLVLLGIDSLND--KGSFTLTTGIMMEDPIVQGASAAMANGAVTAFAKSAAIEM 146

Query: 177 REDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPV 222
               R   I+  ++ P +++           ++L     GF   P 
Sbjct: 147 ---PRG--IRINTVSPNVLEES--------WDKLEPFFEGFLPVPA 179

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* Length = 277

 Score = 54.9 bits (133), Expect = 8e-09
 Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 20/94 (21%)

Query: 90  GNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQIILETFL------PDMMEKNRGHIVG 142
           GNF       A  L  N F+ V+  +I +         TF             + G IV 
Sbjct: 115 GNFLCP----AGALSFNAFKTVM--DI-DTSG------TFNVSRVLYEKFFRDHGGVIVN 161

Query: 143 ISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           I++  G  G    V   ++K AV  +   LA E 
Sbjct: 162 ITATLGNRGQALQVHAGSAKAAVDAMTRHLAVEW 195

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 297

 Score = 54.9 bits (133), Expect = 9e-09
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 132 MMEKNRGHIVGISSM-AGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
            + K +G IV +SS+ AG         Y  +K A+       A +L
Sbjct: 153 HLIKTKGEIVNVSSIVAGPQAHSGYPYYACAKAALDQYTRCTAIDL 198

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} Length = 279

 Score = 54.9 bits (133), Expect = 9e-09
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 132 MMEKNRGHIVGISSMAG-IVGLPNL-VPYCASKFAVRGLMEALAEELREDAR 181
             +  +G ++  SS++G IV +P L  PY  +K A   L ++LA E    AR
Sbjct: 159 FKKNGKGSLIITSSISGKIVNIPQLQAPYNTAKAACTHLAKSLAIEWAPFAR 210

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} Length = 260

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRE 178
              M+   +G IV ISS   +  + N VPY   K A   L    A ELR 
Sbjct: 133 ARLMVPAGQGLIVVISSPGSLQYMFN-VPYGVGKAACDKLAADCAHELRR 181

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} Length = 279

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 18/47 (38%), Positives = 23/47 (48%)

Query: 130 PDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
             M E   G IV I+S  G  G+    PY ASK  V G  +++  EL
Sbjct: 147 GGMREAGWGRIVNIASTGGKQGVMYAAPYTASKHGVVGFTKSVGFEL 193

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} Length = 255

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 1/48 (2%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           LP +     G       +A   G  + + Y  SK+AV  L      + 
Sbjct: 125 LPMVEAMLAGDEARAIELAEQQGQTH-LAYAGSKYAVTCLARRNVVDW 171

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... Length = 288

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 10/47 (21%), Positives = 15/47 (31%)

Query: 130 PDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
                 +   IV +              Y   K A+ GL ++ A EL
Sbjct: 166 NPNCTSSNLSIVNLCDAMVDQPCMAFSLYNMGKHALVGLTQSAALEL 212

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} PDB: 3gdf_A Length = 267

 Score = 53.7 bits (130), Expect = 2e-08
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 132 MMEKNRGHIVGISSMAGIVG--LPNLVPYCASKFAVRGLMEALAEELREDAR 181
             E+  G +V  +SM+G +         Y  +K     +  +LA E R+ AR
Sbjct: 147 FKERGTGSLVITASMSGHIANFPQEQTSYNVAKAGCIHMARSLANEWRDFAR 198

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} Length = 260

 Score = 53.3 bits (129), Expect = 3e-08
 Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLV--PYCASKFAVRGLMEALAEEL 176
             +M+++  GHIV I++      +  +       +K  +  +  +LA E 
Sbjct: 139 AAEMLKQGSGHIVSITTSLVDQPMVGMPSALASLTKGGLNAVTRSLAMEF 188

>2wpn_A Periplasmic [nifese] hydrogenase, small subunit; metal-binding, oxidoreductase, oxygen tolerance; HET: FSX SBY PSW; 2.04A {Desulfovibrio vulgaris} Length = 317

 Score = 53.2 bits (127), Expect = 4e-08
 Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 8/82 (9%)

Query: 279 IMLEPRWVISMGSCANGGG----YYHYSYSV----VRGCDRIIPVDIYVPGCPPTAEALM 330
                  V+++G+CA  GG        + +       G + I    + +PGCPP  + ++
Sbjct: 142 FGPNAAAVLAVGTCAAYGGIPAAEGSETGATAVSKFLGDNGIKTPVVNIPGCPPHPDWIV 201

Query: 331 YGILQLQKKVKRMKILQSWYRR 352
             ++     +K+  +       
Sbjct: 202 GTVVLALDAIKKNGLEGGLAEV 223

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} Length = 276

 Score = 52.6 bits (127), Expect = 5e-08
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 117 NLKNL----QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVP-YCASKFAVRGLMEA 171
           N+ ++    Q +L         +N   ++ I S+AGI  +      Y  SK A+  L   
Sbjct: 136 NVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAMGEQAYAYGPSKAALHQLSRM 195

Query: 172 LAEEL 176
           LA+EL
Sbjct: 196 LAKEL 200

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* Length = 302

 Score = 52.6 bits (127), Expect = 5e-08
 Identities = 9/46 (19%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 132 MMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           +++  +    + I+++    G   +VP  ++K  V  + ++LA E 
Sbjct: 150 LIKAQKGAAFLSITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEW 195

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* Length = 277

 Score = 52.2 bits (126), Expect = 5e-08
 Identities = 20/45 (44%), Positives = 26/45 (57%)

Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           M+E+  G IV I+S  G  G+ +  PY ASK  V G  +AL  EL
Sbjct: 147 MLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLEL 191

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} Length = 262

 Score = 51.0 bits (123), Expect = 1e-07
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 133 MEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFP 192
           M  N GHI+ I++            Y  +K  V     A ++EL    +   I   +I P
Sbjct: 137 MNPN-GHIITIATSLLAAYTGFYSTYAGNKAPVEHYTRAASKELM--KQQ--ISVNAIAP 191

Query: 193 FMVDT 197
             +DT
Sbjct: 192 GPMDT 196

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* Length = 247

 Score = 51.0 bits (123), Expect = 1e-07
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 129 LPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
              M    + G ++ I+S     G PN+  Y A+K  V G   ALA EL
Sbjct: 123 TDQMRAAGKAGRVISIASNTFFAGTPNMAAYVAAKGGVIGFTRALATEL 171

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* Length = 291

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 6/66 (9%)

Query: 117 NLKNLQIILETFLPDMME------KNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLME 170
           N      +++ F   +             I+ +        L     Y  +K A+ GL  
Sbjct: 150 NAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPLLGYTIYTMAKGALEGLTR 209

Query: 171 ALAEEL 176
           + A EL
Sbjct: 210 SAALEL 215

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 Length = 328

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 6/66 (9%)

Query: 117 NLKNLQIILETFLPDMME------KNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLME 170
           N      +++ F   +             I+ +        L     Y  +K A+ GL  
Sbjct: 187 NAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPLLGYTIYTMAKGALEGLTR 246

Query: 171 ALAEEL 176
           + A EL
Sbjct: 247 SAALEL 252

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} Length = 271

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 7/70 (10%)

Query: 129 LPDMMEKNRGHIVGISS-MAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
              + +   G I+ I S +A +V  P +  Y ASK A+ GL + LA +L    R   I  
Sbjct: 152 SRHLGDG--GRIITIGSNLAELVPWPGISLYSASKAALAGLTKGLARDLG--PRG--ITV 205

Query: 188 TSIFPFMVDT 197
             + P   DT
Sbjct: 206 NIVHPGSTDT 215

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 Length = 303

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
            M+++ G IV I       G P  V   A++  V  L ++LA E 
Sbjct: 146 WMKEHGGSIVNIIVP-TKAGFPLAVHSGAARAGVYNLTKSLALEW 189

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A Length = 454

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 6/63 (9%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLP---NLVPYCASKFAVRGLMEALA 173
           NL   Q + E  + +      G ++G+SSMAGI G     N   Y  +K  + GL EALA
Sbjct: 319 NLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIAGNRGQTN---YATTKAGMIGLAEALA 375

Query: 174 EEL 176
             L
Sbjct: 376 PVL 378

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} Length = 604

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 17/48 (35%), Positives = 25/48 (52%)

Query: 130 PDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELR 177
           P  +EK  G I+ I+S +GI G      Y +SK  + GL + +A E  
Sbjct: 439 PYFVEKQFGRIINITSTSGIYGNFGQANYSSSKAGILGLSKTMAIEGA 486

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} Length = 604

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 130 PDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTS 189
           P   ++  G IV  SS AG+ G      Y ++K A+ G  E LA+E      N  IK  +
Sbjct: 135 PYFQKQKYGRIVNTSSPAGLYGNFGQANYASAKSALLGFAETLAKEGA--KYN--IKANA 190

Query: 190 IFPF 193
           I P 
Sbjct: 191 IAPL 194

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} Length = 276

 Score = 49.8 bits (120), Expect = 4e-07
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 132 MMEKNR-GHIVGISSMAGIVGLP--NLVPYCASKFAVRGLMEALAEEL 176
           M+++   G I+  +SM+G +      +  YC SK AV  L +A+A EL
Sbjct: 155 MVDQGLGGTIITTASMSGHIINIPQQVSHYCTSKAAVVHLTKAMAVEL 202

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} Length = 255

 Score = 49.5 bits (119), Expect = 4e-07
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 138 GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT 197
             I+ ISS A  + LP+ + Y  +K A+  +   LA++L   AR   I   +I P  V T
Sbjct: 141 SRIINISSAATRISLPDFIAYSMTKGAINTMTFTLAKQLG--ARG--ITVNAILPGFVKT 196

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} Length = 267

 Score = 49.5 bits (119), Expect = 4e-07
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 138 GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT 197
           G I+ +S+    +  P+   Y A+K  V  +   L++ELR   R+  I   ++ P    T
Sbjct: 155 GRIINMSTSQVGLLHPSYGIYAAAKAGVEAMTHVLSKELR--GRD--ITVNAVAPGPTAT 210

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} Length = 272

 Score = 49.5 bits (119), Expect = 5e-07
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 8/70 (11%)

Query: 132 MMEKNR---GHIVGISSMAGIVGLPN-LVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
           M        G IV +SSMA I+G     V Y ASK A+      LA E+   A    I+ 
Sbjct: 151 MSRLYSGQGGAIVNVSSMAAILGSATQYVDYAASKAAIDTFTIGLAREVA--AEG--IRV 206

Query: 188 TSIFPFMVDT 197
            ++ P +++T
Sbjct: 207 NAVRPGIIET 216

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} Length = 262

 Score = 49.5 bits (119), Expect = 5e-07
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAG-IVGLPNLVPYCASKFAVRGLMEALAEE 175
           N+      ++  L  ++    G +V  SS+ G I G P    Y A+K A  G M   A E
Sbjct: 119 NVNGTFYAVQACLDALIASGSGRVVLTSSITGPITGYPGWSHYGATKAAQLGFMRTAAIE 178

Query: 176 L 176
           L
Sbjct: 179 L 179

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* Length = 319

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 16/48 (33%), Positives = 23/48 (47%)

Query: 130 PDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELR 177
             M ++N G I+  +S +GI G      Y A+K  + GL   L  E R
Sbjct: 136 DHMKKQNYGRIIMTASASGIYGNFGQANYSAAKLGLLGLANTLVIEGR 183

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 30/158 (18%), Positives = 52/158 (32%), Gaps = 41/158 (25%)

Query: 4   ITRITLSHNKL-----KEIPPGLANLVNLEILTLFNNQI--------------ETLPTSL 44
           +  + LS N       + +   L+    LE L L NN +                +    
Sbjct: 96  LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKA 155

Query: 45  SSLPKLRILNLGMNRL-----SSLPRGFGAFPVLEVLDLTYNNLNE--------QSLPGN 91
            + P LR +  G NRL         + F +  +L  + +  N +          + L   
Sbjct: 156 KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC 215

Query: 92  FFMLETLRALYLGDNDF-----EVLPAEIGNLKNLQII 124
               + L+ L L DN F       L   + +  NL+ +
Sbjct: 216 ----QELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 31/132 (23%), Positives = 46/132 (34%), Gaps = 32/132 (24%)

Query: 4   ITRITLSHNKLKE------IPPGLANLVNLEILTLFNNQI-----ETLPTSLSSLPKLRI 52
           +  + +  N ++       +  GLA    L++L L +N         L  +L S P LR 
Sbjct: 189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 248

Query: 53  LNLGMNRLSSLPRGFGAF---------PVLEVLDLTYNNLNE-------QSLPGNFFMLE 96
           L L    LS+  RG  A            L+ L L YN +           +      + 
Sbjct: 249 LGLNDCLLSA--RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK---MP 303

Query: 97  TLRALYLGDNDF 108
            L  L L  N F
Sbjct: 304 DLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 22/129 (17%), Positives = 38/129 (29%), Gaps = 24/129 (18%)

Query: 4   ITRITLSHNKL-----KEIPPGLANLVNLEILTLFNNQI-----ETLPTSLSSLPKLRIL 53
           I   +L  + +     K +   L    +++ + L  N I       L  +++S   L I 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 54  NLGMNRLSSL----PRGFGAF-------PVLEVLDLTYNNLNEQSLPGNFFMLE---TLR 99
                    +    P             P L  + L+ N     +       L     L 
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 100 ALYLGDNDF 108
            LYL +N  
Sbjct: 126 HLYLHNNGL 134

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} Length = 280

 Score = 48.7 bits (117), Expect = 9e-07
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 129 LPDMMEKNR---GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           L  M+  +      I+ I+S++ ++  P  + YC SK  +    + LA  L
Sbjct: 152 LKAMLASDARASRSIINITSVSAVMTSPERLDYCMSKAGLAAFSQGLALRL 202

>1wui_S Periplasmic [NIFE] hydrogenase small subunit; high resolution [NIFE]hydrogenase, oxidoreductase, NI-A state, unready state; HET: NFC; 1.04A {Desulfovibrio vulgaris str} SCOP: e.19.1.1 PDB: 1h2r_S 1ubj_S 1ubh_S 1ubl_S 1ubm_S 1ubo_S 1ubr_S 1ubt_S 1ubu_S 1wuh_S* 1ubk_S* 1wuj_S 1wuk_S 1wul_S 1e3d_A* Length = 267

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 10/75 (13%)

Query: 271 IGNLKNLQIMLE----PRWVISMGSCANGGG--YYHYSYSVVRGCDRIIP----VDIYVP 320
           + N   L I        + VI+ G+CA  GG      + +  +G +  +       I + 
Sbjct: 89  VANHTMLDICSRILPKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGVKAINIA 148

Query: 321 GCPPTAEALMYGILQ 335
           GCPP    L+  I+ 
Sbjct: 149 GCPPNPYNLVGTIVY 163

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 Length = 265

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 8/53 (15%)

Query: 132 MMEKNR-GHIVGISSMAG-IVGLPNL------VPYCASKFAVRGLMEALAEEL 176
            ++K + G IV  SSM+  I+   +L      V Y +SK A   L++ LA E 
Sbjct: 138 WLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVFYNSSKAACSNLVKGLAAEW 190

>1yq9_A Periplasmic [NIFE] hydrogenase small subunit; oxidoreductase; 2.35A {Desulfovibrio gigas} SCOP: e.19.1.1 PDB: 2frv_S 1frv_A Length = 264

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 278 QIMLEPRWVISMGSCANGGG--YYHYSYSVVRGCDRIIPV----DIYVPGCPPTAEALMY 331
           ++  + + VI++G+CA  GG      + +   G +  +       I + GCPP     + 
Sbjct: 98  EVAPKAKAVIAIGTCATYGGVQAAKPNPTGTVGVNEALGKLGVKAINIAGCPPNPMNFVG 157

Query: 332 GILQL 336
            ++ L
Sbjct: 158 TVVHL 162

>1h2a_S Hydrogenase; SO ligand, hydrogen metabolism, Mg center, MIR, MAD, oxidoreductase; 1.80A {Desulfovibrio vulgaris str} SCOP: e.19.1.1 Length = 317

 Score = 48.5 bits (115), Expect = 1e-06
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 10/75 (13%)

Query: 271 IGNLKNLQIMLE----PRWVISMGSCANGGG--YYHYSYSVVRGCDRIIP----VDIYVP 320
           + N   L I        + VI+ G+CA  GG      + +  +G +  +       I + 
Sbjct: 139 VANHTMLDICSRILPKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGVKAINIA 198

Query: 321 GCPPTAEALMYGILQ 335
           GCPP    L+  I+ 
Sbjct: 199 GCPPNPYNLVGTIVY 213

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} Length = 293

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 129 LPDMMEKNRGHIVGISSMAG-IVGLPNLVPYCASKFAVRGLMEALAEEL 176
           L  +    RG ++  SS+ G + G P    Y ASK A  G M   A EL
Sbjct: 162 LAPLTASGRGRVILTSSITGPVTGYPGWSHYGASKAAQLGFMRTAAIEL 210

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* Length = 258

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 6/54 (11%)

Query: 129 LPDMMEKNR-----GHIVGISSMAGIVG-LPNLVPYCASKFAVRGLMEALAEEL 176
           LP +    +       ++   S+AG  G  P    Y A+K  +  + +   +  
Sbjct: 129 LPHLAAAAKASGQTSAVISTGSIAGHTGGGPGAGLYGAAKAFLHNVHKNWVDFH 182

>3ayx_B Membrane-bound hydrogenase small subunit; oxidoreductase, membrane-bound NI-Fe hydrogenase; 1.18A {Hydrogenovibrio marinus} PDB: 3ayy_B 3ayz_B Length = 283

 Score = 46.9 bits (111), Expect = 3e-06
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 11/77 (14%)

Query: 271 IGNLKNLQIMLE----PRWVISMGSCANGGGYY--HYSYSVVRGCDRIIPVD-----IYV 319
           IG     + +       + +IS GSCA+ G       + +      + +        I V
Sbjct: 96  IGGRPFSEQLKRMADDAKAIISWGSCASWGCVQAAKPNPTQATPVHKFLGGGYDKPIIKV 155

Query: 320 PGCPPTAEALMYGILQL 336
           PGCPP AE +   I  +
Sbjct: 156 PGCPPIAEVMTGVITYM 172

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} Length = 259

 Score = 46.4 bits (111), Expect = 4e-06
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVG-LPNLVPYCASKFAVRGLMEALAEEL 176
           LP M +   G IV  SS AG  G  P  + Y  SK AV      LA+E+
Sbjct: 130 LPKMAKG--GAIVTFSSQAGRDGGGPGALAYATSKGAVMTFTRGLAKEV 176

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} Length = 281

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 137 RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD 196
           RG +V  +S+AG  G      Y A+K  V GL  A A +L   +  + I+  +I P  + 
Sbjct: 166 RGALVLTASIAGYEGQIGQTAYAAAKAGVIGLTIAAARDL---SS-AGIRVNTIAPGTMK 221

Query: 197 TGL 199
           T +
Sbjct: 222 TPI 224

>1yqw_A Periplasmic [NIFE] hydrogenase small subunit; NI-Fe hydrogenase unready state, oxidoreductase; 1.83A {Desulfovibrio fructosovorans} PDB: 3cur_A 3cus_A 3h3x_A 1yrq_A 1frf_S Length = 264

 Score = 46.1 bits (109), Expect = 6e-06
 Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 5/77 (6%)

Query: 278 QIMLEPRWVISMGSCANGGG--YYHYSYSVVRGCDRIIPVDIY-VPGCPPTAEALMYGIL 334
           +   + + +I +G+C+  GG      + S  +G    + V    +PGCPP     +  ++
Sbjct: 100 KAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVV 159

Query: 335 QLQKKVKRMKILQSWYR 351
            +    K +  L    R
Sbjct: 160 HV--LTKGIPDLDENGR 174

>3uqy_S Hydrogenase-1 small chain; membrane-bound hydrogenase, oxidoreductase; HET: LMT; 1.47A {Escherichia coli} PDB: 3usc_S* 3use_S* Length = 335

 Score = 46.6 bits (110), Expect = 6e-06
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 278 QIMLEPRWVISMGSCANGGG--YYHYSYSVVRGCDRIIP--VDIYVPGCPPTAEALMYGI 333
           +       +I+ G+CA+ G       + +     D++I     I VPGCPP  + +   I
Sbjct: 101 RAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAII 160

Query: 334 LQL 336
             +
Sbjct: 161 TYM 163

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A Length = 270

 Score = 46.0 bits (110), Expect = 6e-06
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 7/70 (10%)

Query: 129 LPDMMEKNRGHIVGISS-MAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
              + E   G IV  SS  +    +P    Y  SK AV   +   +++     +   I  
Sbjct: 139 YRHLTEG--GRIVLTSSNTSKDFSVPKHSLYSGSKGAVDSFVRIFSKDCG--DKK--ITV 192

Query: 188 TSIFPFMVDT 197
            ++ P    T
Sbjct: 193 NAVAPGGTVT 202

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* Length = 283

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 138 GHIVGISSMAG-IVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD 196
           G ++ + S+ G    +P    Y  SK A+      +A ++    +   I    + P  + 
Sbjct: 157 GRLILMGSITGQAKAVPKHAVYSGSKGAIETFARCMAIDMA--DKK--ITVNVVAPGGIK 212

Query: 197 T 197
           T
Sbjct: 213 T 213

>3rgw_S Membrane-bound hydrogenase (NIFE) small subunit H; [NIFE] hydrogenase, high-resolution knallgasbacteria, proteobacteria; 1.50A {Ralstonia eutropha} Length = 339

 Score = 46.2 bits (109), Expect = 8e-06
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 8/74 (10%)

Query: 271 IGNLKNLQIMLE----PRWVISMGSCANGGGYY--HYSYSVVRGCDRIIPVD--IYVPGC 322
           IG    ++ +       + +IS GSCA+ G       + +      ++I     I VPGC
Sbjct: 90  IGGRPFIEQLKYVAKDAKAIISWGSCASWGCVQAAKPNPTQATPVHKVITDKPIIKVPGC 149

Query: 323 PPTAEALMYGILQL 336
           PP AE +   I  +
Sbjct: 150 PPIAEVMTGVITYM 163

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 Length = 274

 Score = 45.7 bits (109), Expect = 9e-06
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 138 GHIVGISSMAGI-VGLPNLVPYCASKFAVRGLMEALAEELR 177
           G I+  SS+A +  G+PN   Y  SK AV G   A A +  
Sbjct: 149 GRIILTSSIAAVMTGIPNHALYAGSKAAVEGFCRAFAVDCG 189

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 24/128 (18%)

Query: 4   ITRITLSHNKL-----KEIPPGLA-NLVNLEILTLFNNQI-----ETLPTSLSSLPKLRI 52
              +T+S+N +     + +  GL  +   LE L L +  +       L   ++S   LR 
Sbjct: 172 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 231

Query: 53  LNLGMNRLSSLPRGFGAF--------PVLEVLDLTYNNLNEQSLPGNFFMLE---TLRAL 101
           L LG N+L     G              L  L +    +  +       +L    +L+ L
Sbjct: 232 LALGSNKLGD--VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKEL 289

Query: 102 YLGDNDFE 109
            L  N+  
Sbjct: 290 SLAGNELG 297

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 24/127 (18%)

Query: 4   ITRITLSHNKL-----KEIPPGLANL-VNLEILTLFNNQI-----ETLPTSLSSLPKLRI 52
           +  + L  N+L       +  GL      ++ L+L N  +       L ++L +LP L+ 
Sbjct: 58  LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 117

Query: 53  LNLGMNRLSSLPRGFGAF--------PVLEVLDLTYNNLNEQSLPGNFFMLE---TLRAL 101
           L+L  N L     G              LE L L Y +L+  S      +L      + L
Sbjct: 118 LHLSDNLLG--DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKEL 175

Query: 102 YLGDNDF 108
            + +ND 
Sbjct: 176 TVSNNDI 182

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 26/125 (20%), Positives = 40/125 (32%), Gaps = 20/125 (16%)

Query: 4   ITRITLSHNKL-----KEIPPGLANLVNLEILTLFNNQI-----ETLPTSLSSL-PKLRI 52
              + L    L     K+I   L     L  L L +N++       +   L +   K++ 
Sbjct: 30  CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQK 89

Query: 53  LNLGMNRLS-----SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLE----TLRALYL 103
           L+L    L+      L       P L+ L L+ N L +  L      L      L  L L
Sbjct: 90  LSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQL 149

Query: 104 GDNDF 108
                
Sbjct: 150 EYCSL 154

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 27/132 (20%), Positives = 45/132 (34%), Gaps = 32/132 (24%)

Query: 4   ITRITLSHNKL-----KEIPPGLAN-LVNLEILTLFNNQI-----ETLPTSLSSLPKLRI 52
           +  ++L+ N+L     + +   L      LE L + +            + L+    L  
Sbjct: 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345

Query: 53  LNLGMNRLSSLPRGFGAF--------PVLEVLDLTYNNLNEQS-------LPGNFFMLET 97
           L +  NRL     G             VL VL L   ++++ S       L  N     +
Sbjct: 346 LQISNNRLED--AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN----HS 399

Query: 98  LRALYLGDNDFE 109
           LR L L +N   
Sbjct: 400 LRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 27/125 (21%), Positives = 44/125 (35%), Gaps = 20/125 (16%)

Query: 4   ITRITLSHNKL-----KEIPPGLANLVNLEILTLFNNQIET------LPTSLSSLPKLRI 52
           I +++L +  L       +   L  L  L+ L L +N +            L    +L  
Sbjct: 87  IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEK 146

Query: 53  LNLGMNRLSS-----LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLE----TLRALYL 103
           L L    LS+     L     A P  + L ++ N++NE  +      L+     L AL L
Sbjct: 147 LQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL 206

Query: 104 GDNDF 108
                
Sbjct: 207 ESCGV 211

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} Length = 613

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 18/48 (37%), Positives = 25/48 (52%)

Query: 130 PDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELR 177
           P M ++N G I+  SS +GI G    V Y A+K  + GL   +A E  
Sbjct: 146 PYMKKQNYGRIIMTSSNSGIYGNFGQVNYTAAKMGLIGLANTVAIEGA 193

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* Length = 257

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 28/88 (31%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAG---------------------------- 148
           N      +++ FLP + + ++   V ISS+A                             
Sbjct: 86  NYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEH 145

Query: 149 IVGLPNLVPYCASKFAVRGLMEALAEEL 176
                  + Y  SK A+   +   A   
Sbjct: 146 AGEQGGNLAYAGSKNALTVAVRKRAAAW 173

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} Length = 294

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 11/39 (28%), Positives = 20/39 (51%)

Query: 138 GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
             I+  SS+      P+L+ Y A+K A+      LA+++
Sbjct: 179 ASIITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQV 217

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 Length = 245

 Score = 44.0 bits (105), Expect = 2e-05
 Identities = 22/50 (44%), Positives = 23/50 (46%), Gaps = 5/50 (10%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNL--VPYCASKFAVRGLMEALAEEL 176
              M EKN G IV  +S    V L NL    Y AS   V GL   LA EL
Sbjct: 120 SEAMREKNPGSIVLTAS---RVYLGNLGQANYAASMAGVVGLTRTLALEL 166

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A Length = 247

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           M     G ++ I S++G+ G+ N   Y ASK  V G+  ++A EL
Sbjct: 127 MQRNKFGRMIFIGSVSGLWGIGNQANYAASKAGVIGMARSIAREL 171

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Length = 269

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 15/48 (31%), Positives = 23/48 (47%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           +  M+E+  G IV I S+ G  G      Y ++K  + G  + LA E 
Sbjct: 146 IAGMVERRFGRIVNIGSVNGSRGAFGQANYASAKAGIHGFTKTLALET 193

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} Length = 256

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
            +  M+E+  G I+ ISS+ G  G      Y  +K  + G   +LA+E+
Sbjct: 133 VIDGMVERGWGRIINISSVNGQKGQFGQTNYSTAKAGIHGFTMSLAQEV 181

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 Length = 263

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
              + E   G +V   S+AG +G   L  Y A K  V GL   LA EL
Sbjct: 123 GEVLEEG--GSLVLTGSVAG-LGAFGLAHYAAGKLGVVGLARTLALEL 167

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} Length = 253

 Score = 43.7 bits (104), Expect = 4e-05
 Identities = 17/45 (37%), Positives = 25/45 (55%)

Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           M+   +G +V ISS+ G++G      Y ASK  + G   +LA EL
Sbjct: 133 MLRAKKGRVVLISSVVGLLGSAGQANYAASKAGLVGFARSLAREL 177

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* Length = 265

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 137 RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD 196
           RG I+  +S+A   G      Y ASK  + G+   +A +L   A    I+  +I P +  
Sbjct: 149 RGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIARDL---AP-IGIRVMTIAPGLFG 204

Query: 197 TGL 199
           T L
Sbjct: 205 TPL 207

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* Length = 269

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 17/48 (35%), Positives = 28/48 (58%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
              M+++  G I+ I+S+ G +G P    Y A+K  V GL + +A+EL
Sbjct: 149 AKIMLKQRSGRIINIASVVGEMGNPGQANYSAAKAGVIGLTKTVAKEL 196

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} Length = 247

 Score = 43.2 bits (103), Expect = 5e-05
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
              M+++  G I+ I+S+AGI+G      Y ASK  + G  +++A+E 
Sbjct: 126 SKIMLKQKSGKIINITSIAGIIGNAGQANYAASKAGLIGFTKSIAKEF 173

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} Length = 264

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 117 NLKNLQIILETFLPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEE 175
           NLK   ++ +     ++     G I+ ISS+ G VG      Y ASK  V GL +  A E
Sbjct: 123 NLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNVGQTNYAASKAGVIGLTQTAARE 182

Query: 176 L 176
           L
Sbjct: 183 L 183

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G Length = 244

 Score = 42.9 bits (102), Expect = 7e-05
 Identities = 16/48 (33%), Positives = 25/48 (52%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
              MM+K +G I+ I+S+ G++G      Y A+K  V G  +  A E 
Sbjct: 122 TKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREG 169

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} Length = 246

 Score = 42.8 bits (102), Expect = 7e-05
 Identities = 19/48 (39%), Positives = 26/48 (54%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
              MM +  G IV I+S+ G+ G P    Y A+K  V GL +  A+EL
Sbjct: 125 SRFMMRQRHGRIVNIASVVGVTGNPGQANYVAAKAGVIGLTKTSAKEL 172

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 Length = 285

 Score = 42.9 bits (102), Expect = 8e-05
 Identities = 17/48 (35%), Positives = 25/48 (52%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
              M+    G I+ ISS+ G+ G      Y +SK  V G  ++LA+EL
Sbjct: 164 SKRMINNRYGRIINISSIVGLTGNVGQANYSSSKAGVIGFTKSLAKEL 211

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 8e-05
 Identities = 33/211 (15%), Positives = 65/211 (30%), Gaps = 51/211 (24%)

Query: 107 DFEVLPAEIGNLKNLQIILETFLPDM-------MEKNRGHIVGISSMAGIVGLPNLVPYC 159
           DFE    +      L +  + F+ +        M K+   I+    +  I+   + V   
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKS---ILSKEEIDHIIMSKDAVS-- 62

Query: 160 ASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGA 219
                   L   L        +   ++    F   V+  L  N K  M+ + +  R    
Sbjct: 63  ----GTLRLFWTL-----LSKQEEMVQ---KF---VEEVLRINYKFLMSPIKTEQRQ--- 104

Query: 220 FPVLEAFSFTTILDLTYNNLNEQSLPGNFF---MLETLR-ALY-LGDNDF---------- 264
            P +    +    D  YN+ N+     N         LR AL  L               
Sbjct: 105 -PSMMTRMYIEQRDRLYND-NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162

Query: 265 -EVLPAEIGNLKNLQIMLEPR--WVISMGSC 292
              +  ++     +Q  ++ +  W +++ +C
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFW-LNLKNC 192

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 5e-04
 Identities = 49/303 (16%), Positives = 88/303 (29%), Gaps = 96/303 (31%)

Query: 21  LANLVNLEILTLFNNQIETLPTS--------LSSLPKLRILNLGMNRLSSLPRGFGAFPV 72
           L N+ N +    FN   + L T+        LS+     I       L           V
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI------SLDHHSMTLTPDEV 303

Query: 73  LEVLDLTYNNLNEQSLP-----GNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILET 127
             +L L Y +   Q LP      N   L  +    + D       A   N K++      
Sbjct: 304 KSLL-LKYLDCRPQDLPREVLTTNPRRLSIIAES-IRDG-----LATWDNWKHVNC---- 352

Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
              D +      I+  S       L  L P        R + + L+              
Sbjct: 353 ---DKLTT----IIESS-------LNVLEPA-----EYRKMFDRLS-------------- 379

Query: 188 TSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGN 247
             +FP         +  I    LS +   +      +       L   Y+ + +Q     
Sbjct: 380 --VFP--------PSAHIPTILLSLI---WFDVIKSDVMVVVNKL-HKYSLVEKQPKEST 425

Query: 248 FFMLETLRALYLGDNDFEVLPAEIGNLKNL-QIMLEPRWVISMGSCANGG------GYYH 300
                ++ ++YL       L  ++ N   L + +++  + I     ++         Y+ 
Sbjct: 426 I----SIPSIYL------ELKVKLENEYALHRSIVD-HYNIPKTFDSDDLIPPYLDQYF- 473

Query: 301 YSY 303
           YS+
Sbjct: 474 YSH 476

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.0 bits (100), Expect = 8e-05
 Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 17/104 (16%)

Query: 20  GLANLVNLEILTLF--------NNQIETLPTSLS--SLPKLRILNLGMNRLSS-LPRGFG 68
             ++L NLE L L+        +  +       S    P L+ L +      + +   F 
Sbjct: 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFL 273

Query: 69  AFPV---LEVLDLTYNNLNE---QSLPGNFFMLETLRALYLGDN 106
              +   LE +D++   L +   + L  +   ++ L+ + +  N
Sbjct: 274 ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.2 bits (98), Expect = 2e-04
 Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 13/90 (14%)

Query: 9   LSHNKLKEIPPGLAN--LVNLEILTLFNNQI-----ETLPTSLSSLPKLRILNLGMNRLS 61
                +    P  +     NL+ L + + +      E    S   LP+L  +++    L+
Sbjct: 234 GFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLT 292

Query: 62  -----SLPRGFGAFPVLEVLDLTYNNLNEQ 86
                 L         L+ +++ YN L+++
Sbjct: 293 DEGARLLLDHVDKIKHLKFINMKYNYLSDE 322

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} PDB: 3sj7_A* Length = 246

 Score = 42.5 bits (101), Expect = 8e-05
 Identities = 19/48 (39%), Positives = 27/48 (56%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
            P M+ +  G I+ +SS+ G VG P    Y A+K  V GL ++ A EL
Sbjct: 125 TPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAAREL 172

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} Length = 270

 Score = 42.5 bits (101), Expect = 9e-05
 Identities = 24/60 (40%), Positives = 32/60 (53%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           NLK +  +    L  MM+   G IV I+S+ G  G P  V Y A+K  V G+  ALA E+
Sbjct: 136 NLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSAGNPGQVNYAAAKAGVAGMTRALAREI 195

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 9/65 (13%)

Query: 14 LKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMN------RLSSLPRG 66
             +P      V+   L L  N +  LP   L +LP LR  +LG N      RL  L   
Sbjct: 22 WASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAW 79

Query: 67 FGAFP 71
              P
Sbjct: 80 LAGRP 84

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} Length = 245

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 19/48 (39%), Positives = 27/48 (56%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           +  MM+   G IV I+S+ GI+G P    Y ASK  + G   A+A+E 
Sbjct: 123 VKLMMKARFGRIVNITSVVGILGNPGQANYVASKAGLIGFTRAVAKEY 170

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB: 3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E Length = 248

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 18/60 (30%), Positives = 33/60 (55%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           NL ++  + +  L  MM+K +G I+ + S+ G +G      Y A+K  V G  +++A E+
Sbjct: 114 NLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAKAGVIGFTKSMAREV 173

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 Length = 242

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 11/76 (14%)

Query: 131 DMMEKN-------RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNS 183
             M +N       RG IV  +S+A   G      Y ASK  V  L    A EL   A   
Sbjct: 114 WAMRENPPDAEGQRGVIVNTASVAAFEGQIGQAAYAASKGGVVALTLPAAREL---AG-W 169

Query: 184 KIKFTSIFPFMVDTGL 199
            I+  ++ P + DT L
Sbjct: 170 GIRVVTVAPGLFDTPL 185

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} Length = 257

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 137 RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD 196
           RG IV  +S+A   G      Y ASK  V  L    A EL   AR   I+  +I P + D
Sbjct: 142 RGVIVNTASIAAFDGQIGQAAYAASKGGVAALTLPAAREL---ARF-GIRVVTIAPGIFD 197

Query: 197 TGL 199
           T +
Sbjct: 198 TPM 200

>3myr_A Hydrogenase (NIFE) small subunit HYDA; [NIFE] hydrogenase, photosynthetic P sulfur bacterium, iron-sulfur cluster, NI-A state; HET: SF4; 2.10A {Allochromatium vinosum} Length = 269

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 284 RWVISMGSCANGGGYY--HYSYSVVRGCDRIIPVD--IYVPGCPPTAEALMYGILQL 336
             VI++G+CA  GG      + +       ++     I VPGCPP    +   I   
Sbjct: 105 AAVIAVGTCAAFGGLPQARPNPTGAMSVMDLVRDKPVINVPGCPPIPMVITGVIAHY 161

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 Length = 267

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 118 LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGL---PNLVPYCASKFAVRGLMEALAE 174
           L  L+   +      M   R  I+ +SS+ G +       +  Y  SK A+    ++L+ 
Sbjct: 146 LPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNTDGGMYAYRTSKSALNAATKSLSV 205

Query: 175 ELREDARNSKIKFTSIFPFMVDT 197
           +L       +I   S+ P  V T
Sbjct: 206 DLYPQ----RIMCVSLHPGWVKT 224

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} Length = 257

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 137 RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD 196
           RG I+  +S+A   G      Y ASK  V G+   +A +L   A   +I+  +I P + D
Sbjct: 142 RGVIINTASVAAFDGQIGQAAYSASKGGVVGMTLPIARDL---AS-HRIRVMTIAPGLFD 197

Query: 197 TGL 199
           T L
Sbjct: 198 TPL 200

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} Length = 247

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 19/45 (42%), Positives = 26/45 (57%)

Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           MM+K  G I+ I S+ G  G P    YCA+K  V G  ++LA E+
Sbjct: 128 MMKKRWGRIISIGSVVGSAGNPGQTNYCAAKAGVIGFSKSLAYEV 172

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A Length = 266

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 19/45 (42%), Positives = 29/45 (64%)

Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           MM +  G I+ I+S+ G+VG P    YCA+K  + G  +ALA+E+
Sbjct: 147 MMRRRYGRIINITSIVGVVGNPGQTNYCAAKAGLIGFSKALAQEI 191

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} Length = 322

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 13/47 (27%), Positives = 19/47 (40%)

Query: 131 DMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELR 177
              +   G I+  SS AG+ G      Y A+K  +  L    A E+ 
Sbjct: 165 KAGKAVDGRIINTSSGAGLQGSVGQGNYSAAKAGIATLTLVGAAEMG 211

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} Length = 249

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 19/45 (42%), Positives = 29/45 (64%)

Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           M++K  G I+ ISS+ GI G P    YCASK  + G+ ++L+ E+
Sbjct: 130 MIQKRYGRIINISSIVGIAGNPGQANYCASKAGLIGMTKSLSYEV 174

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* Length = 248

 Score = 40.9 bits (97), Expect = 3e-04
 Identities = 17/45 (37%), Positives = 26/45 (57%)

Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           M+++  G IV ISS+ G  G    V Y  +K  + G  ++LA+EL
Sbjct: 131 MIKQRWGRIVNISSVVGFTGNVGQVNYSTTKAGLIGFTKSLAKEL 175

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 24/133 (18%), Positives = 44/133 (33%), Gaps = 31/133 (23%)

Query: 1   MLYITRITLSHNKL-----KEIPPGLA-NLVNLEILTLFNNQI-----ETLPTSLSSLPK 49
            L   ++ L  N L     K++   L  +   +  L L NN +       L   L+    
Sbjct: 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS 184

Query: 50  LRILNLGMNRLSSLPRGFGAF-------PVLEVLDLTYNNLNE-------QSLPGNFFML 95
           +  L+L    L     G             L+ L++ YN   +       ++   +    
Sbjct: 185 VTHLSLLHTGLG--DEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREH---- 238

Query: 96  ETLRALYLGDNDF 108
            +L  L+L  N+ 
Sbjct: 239 PSLELLHLYFNEL 251

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* Length = 291

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 129 LPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           L  + +     I+  +S+    G   L+ Y A+K A+     +L++ L
Sbjct: 169 LSHLKQG--DVIINTASIVAYEGNETLIDYSATKGAIVAFTRSLSQSL 214

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} Length = 264

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 129 LPDMMEKNRGHIVGIS--SMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           +P M ++N G I+           G      + A+K  +  L + +A E 
Sbjct: 130 VPVMRKQNFGRIINYGFQGADSAPGWIYRSAFAAAKVGLVSLTKTVAYEE 179

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	352
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.98
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.94
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.94
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.94
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.93
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.93
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.93
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.93
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.93
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.92
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.92
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.92
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.92
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.92
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.92
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.92
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.92
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.92
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.92
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.92
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.92
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.92
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.91
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.91
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.91
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.91
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.91
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.91
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.91
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.91
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.91
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.9
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.9
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.9
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.89
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.89
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.88
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.88
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.87
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.86
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.82
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.81
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.81
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.8
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.8
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.8
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.79
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.79
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.79
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.77
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.76
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.76
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.75
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.74
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.74
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.74
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.74
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.73
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.73
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.72
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.71
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.68
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.67
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.67
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.67
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.65
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.64
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.58
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.58
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.54
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.52
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.5
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.48
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.48
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.46
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.46
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.36
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.31
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.21
3i9v_6	181	NADH-quinone oxidoreductase subunit 6; electron tr	99.06
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.0
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.89
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.85
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.85
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.79
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.73
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.67
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.47
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.32
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.23
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.16
1wui_S	267	Periplasmic [NIFE] hydrogenase small subunit; high	97.93
1yq9_A	264	Periplasmic [NIFE] hydrogenase small subunit; oxid	97.92
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.92
1h2a_S	317	Hydrogenase; SO ligand, hydrogen metabolism, Mg ce	97.84
2wpn_A	317	Periplasmic [nifese] hydrogenase, small subunit; m	97.82
3rgw_S	339	Membrane-bound hydrogenase (NIFE) small subunit H;	97.78
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.72
3ayx_B	283	Membrane-bound hydrogenase small subunit; oxidored	97.66
3myr_A	269	Hydrogenase (NIFE) small subunit HYDA; [NIFE] hydr	97.65
3uqy_S	335	Hydrogenase-1 small chain; membrane-bound hydrogen	97.62
1yqw_A	264	Periplasmic [NIFE] hydrogenase small subunit; NI-F	97.61
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.54
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.5
1cc1_S	283	Hydrogenase (small subunit); NI-Fe-Se hydrogenase,	97.5
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.47
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.33
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.31
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.29
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.16
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.11
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.04
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.2
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	95.82
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	95.11
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	94.07
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	93.83
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	93.45
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	93.09
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	92.09
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	89.55
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	86.38
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	85.03
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	83.94
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	83.69
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	83.54
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	83.52
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	83.19
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	82.77
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	82.66
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	82.35
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	82.2
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	81.44
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	81.37
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	81.17
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	80.94
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	80.91
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	80.55
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	80.48
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	80.31
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	80.22

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.98  E-value=1e-32  Score=280.18  Aligned_cols=313  Identities=24%  Similarity=0.316  Sum_probs=195.0

Q ss_pred             CCccEEEeeCCcCc-ccCccccCCCCCCEEEccCCcCc-ccccccCCCCCCcEEEccCCCCC-ccccccCCCCCCCEEEc
Q psy5270           2 LYITRITLSHNKLK-EIPPGLANLVNLEILTLFNNQIE-TLPTSLSSLPKLRILNLGMNRLS-SLPRGFGAFPVLEVLDL   78 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~-~ip~~l~~l~~L~~L~L~~N~l~-~ip~~l~~L~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L   78 (352)
                      ++|++|++++|+++ .+|..++++++|++|++++|+++ .+|..++++++|+.|++++|+++ .+|..++.+++|+.|++
T Consensus       394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  473 (768)
T 3rgz_A          394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL  473 (768)
T ss_dssp             CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred             CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence            34666666666666 56666666666666666666666 55666666666666666666666 55666666666666666


Q ss_pred             cCCCCCCCCCCCccccCccCcEEEccCCccc-cchhhccCcccHHHHHHhcc------hhhHhh-cCceEeecccccccc
Q psy5270          79 TYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQIILETFL------PDMMEK-NRGHIVGISSMAGIV  150 (352)
Q Consensus        79 s~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~-~ip~~~~nl~~L~~L~l~~~------p~~~~~-~~g~i~~iss~~~l~  150 (352)
                      ++|+++| .+|..++++++|++|++++|+++ .+|.+++++++|++++++..      |..+.. ......+++.+...+
T Consensus       474 ~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g  552 (768)
T 3rgz_A          474 DFNDLTG-EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG  552 (768)
T ss_dssp             CSSCCCS-CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred             cCCcccC-cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence            6666665 56666666666666666666666 56666666666666655431      111111 111122222211111


Q ss_pred             CCCCcccccc-------ch--------h--------------hhhhhhHHhHHHHH--HHHhcCCceeecccCccc-ccC
Q psy5270         151 GLPNLVPYCA-------SK--------F--------------AVRGLMEALAEELR--EDARNSKIKFTSIFPFMV-DTG  198 (352)
Q Consensus       151 ~lp~l~~~~~-------s~--------~--------------~l~~~~~~l~~~l~--~~~~~~~n~~~g~~P~~~-~~~  198 (352)
                      .+|.......       ..        +              .+.+........+.  ....+..+.+.|.+|..+ ...
T Consensus       553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~  632 (768)
T 3rgz_A          553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG  632 (768)
T ss_dssp             BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred             cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence            2221110000       00        0              00000000000000  011234467777776544 456


Q ss_pred             CccCcccccccCC-CcccCCCCCcccchhhhhhhhhhccccccccCCCchhhhhHHhHhhhCCCCcce-ecchhhhcccc
Q psy5270         199 LCKNPKIKMNRLS-SLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKN  276 (352)
Q Consensus       199 ~l~~l~l~~n~l~-~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~-~iP~~l~~l~~  276 (352)
                      .++.+++++|+++ .+|.+++.++.|      +.|||++|+++| .||..|+++++|++|||++|+++ .||.+++++++
T Consensus       633 ~L~~LdLs~N~l~g~ip~~l~~l~~L------~~L~Ls~N~l~g-~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~  705 (768)
T 3rgz_A          633 SMMFLDMSYNMLSGYIPKEIGSMPYL------FILNLGHNDISG-SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM  705 (768)
T ss_dssp             CCCEEECCSSCCBSCCCGGGGGCTTC------CEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCC
T ss_pred             cccEEECcCCcccccCCHHHhccccC------CEEeCcCCccCC-CCChHHhCCCCCCEEECCCCcccCcCChHHhCCCC
Confidence            7788999999999 999999999888      699999999999 89999999999999999999999 99999999999


Q ss_pred             cccccCCceeeeccccccCCcccccccccccCCCcccccceecCCCCCC
Q psy5270         277 LQIMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPT  325 (352)
Q Consensus       277 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gcpp~  325 (352)
                      |++++..++... |..+..+.+-.+....+.|++.++...  ++.|++.
T Consensus       706 L~~L~ls~N~l~-g~iP~~~~~~~~~~~~~~gN~~Lcg~~--l~~C~~~  751 (768)
T 3rgz_A          706 LTEIDLSNNNLS-GPIPEMGQFETFPPAKFLNNPGLCGYP--LPRCDPS  751 (768)
T ss_dssp             CSEEECCSSEEE-EECCSSSSGGGSCGGGGCSCTEEESTT--SCCCCSC
T ss_pred             CCEEECcCCccc-ccCCCchhhccCCHHHhcCCchhcCCC--CcCCCCC
Confidence            999977766553 445555555556666788888777322  3357643

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=1.3e-32  Score=252.39  Aligned_cols=215  Identities=23%  Similarity=0.228  Sum_probs=192.0

Q ss_pred             CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCC
Q psy5270           2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYN   81 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N   81 (352)
                      ++++.|+|++|.++.+|++++++++|++|+|++|.++.+|..++++++|++|++++|+++.+|..++++++|++|++++|
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n  160 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC  160 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEE
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcccc---------CccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCC
Q psy5270          82 NLNEQSLPGNFFM---------LETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGL  152 (352)
Q Consensus        82 ~l~g~~~p~~~~~---------l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~l  152 (352)
                      ++.+ .+|..++.         +++|++|++++|+++.+|..++++++|+.|+++                         
T Consensus       161 ~~~~-~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~-------------------------  214 (328)
T 4fcg_A          161 PELT-ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIR-------------------------  214 (328)
T ss_dssp             TTCC-CCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEE-------------------------
T ss_pred             CCcc-ccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEcc-------------------------
Confidence            9888 79998765         999999999999999999999988887765443                         


Q ss_pred             CCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCC-CcccCCCCCcccchhhhhhh
Q psy5270         153 PNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLS-SLPRGFGAFPVLEAFSFTTI  231 (352)
Q Consensus       153 p~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~-~ip~~~~~l~~L~~~~~L~~  231 (352)
                                                     +|.++++.+.......++.+++++|++. .+|..++.++.|      +.
T Consensus       215 -------------------------------~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L------~~  257 (328)
T 4fcg_A          215 -------------------------------NSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL------KR  257 (328)
T ss_dssp             -------------------------------SSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC------CE
T ss_pred             -------------------------------CCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCC------CE
Confidence                                           3334443333345567788899998877 889999988888      79


Q ss_pred             hhhccccccccCCCchhhhhHHhHhhhCCCCcce-ecchhhhcccccccc
Q psy5270         232 LDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQIM  280 (352)
Q Consensus       232 L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~-~iP~~l~~l~~L~~l  280 (352)
                      |++++|++.+ .+|..++.+++|++|+|++|++. .+|++++++++|+.+
T Consensus       258 L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l  306 (328)
T 4fcg_A          258 LILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII  306 (328)
T ss_dssp             EECTTCTTCC-BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred             EECCCCCchh-hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEE
Confidence            9999999998 89999999999999999999988 999999999999876

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=1.7e-32  Score=278.52  Aligned_cols=80  Identities=26%  Similarity=0.331  Sum_probs=66.0

Q ss_pred             hhhhhhhccccccccCCCchhhhhHHhHhhhCCCCcce-ecchhhhcccccccccCCce------eeeccccccCCcccc
Q psy5270         228 FTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQIMLEPRW------VISMGSCANGGGYYH  300 (352)
Q Consensus       228 ~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~-~iP~~l~~l~~L~~l~~~~~------~~~~~~~~~~~~~~~  300 (352)
                      .++.|||++|+++| .+|.+|+++++|+.|+|++|+++ .||.+++++++|++|+...+      |...+..... ..++
T Consensus       633 ~L~~LdLs~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L-~~L~  710 (768)
T 3rgz_A          633 SMMFLDMSYNMLSG-YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML-TEID  710 (768)
T ss_dssp             CCCEEECCSSCCBS-CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCC-SEEE
T ss_pred             cccEEECcCCcccc-cCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCC-CEEE
Confidence            35799999999999 89999999999999999999999 99999999999999965444      3334444443 3688


Q ss_pred             cccccccCC
Q psy5270         301 YSYSVVRGC  309 (352)
Q Consensus       301 ~~~~~~~~~  309 (352)
                      +++|.+.|.
T Consensus       711 ls~N~l~g~  719 (768)
T 3rgz_A          711 LSNNNLSGP  719 (768)
T ss_dssp             CCSSEEEEE
T ss_pred             CcCCccccc
Confidence            889888763

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=1.7e-30  Score=236.63  Aligned_cols=242  Identities=22%  Similarity=0.293  Sum_probs=192.8

Q ss_pred             CCccEEEeeCCcCc---ccCccccCCCCCCEEEccC-CcCc-ccccccCCCCCCcEEEccCCCCC-ccccccCCCCCCCE
Q psy5270           2 LYITRITLSHNKLK---EIPPGLANLVNLEILTLFN-NQIE-TLPTSLSSLPKLRILNLGMNRLS-SLPRGFGAFPVLEV   75 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~---~ip~~l~~l~~L~~L~L~~-N~l~-~ip~~l~~L~~L~~L~L~~N~l~-~ip~~~~~l~~L~~   75 (352)
                      .+++.|+|++|.++   .+|+.++++++|++|++++ |.+. .+|..++++++|++|++++|+++ .+|..|+++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            47899999999998   5899999999999999995 9998 88999999999999999999999 88999999999999


Q ss_pred             EEccCCCCCCCCCCCccccCccCcEEEccCCccc-cchhhccCcc-cHHHHHHhcchhhHhhcCceEeeccccccccCCC
Q psy5270          76 LDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLK-NLQIILETFLPDMMEKNRGHIVGISSMAGIVGLP  153 (352)
Q Consensus        76 L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~-~ip~~~~nl~-~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp  153 (352)
                      |++++|.+++ .+|..++++++|++|++++|+++ .+|..++++. +|+.++++..         .+.+.. ...+..+.
T Consensus       130 L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N---------~l~~~~-~~~~~~l~  198 (313)
T 1ogq_A          130 LDFSYNALSG-TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN---------RLTGKI-PPTFANLN  198 (313)
T ss_dssp             EECCSSEEES-CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS---------EEEEEC-CGGGGGCC
T ss_pred             EeCCCCccCC-cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC---------eeeccC-ChHHhCCc
Confidence            9999999998 79999999999999999999999 8999999987 7777766541         111100 01111111


Q ss_pred             CccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc-ccCCccCcccccccCCCcccCCCCCcccchhhhhhhh
Q psy5270         154 NLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV-DTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTIL  232 (352)
Q Consensus       154 ~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~-~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L  232 (352)
                       +                      ..+++++|.+++..|..+ ....++.+++++|+++..+..++.++.|      +.|
T Consensus       199 -L----------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L------~~L  249 (313)
T 1ogq_A          199 -L----------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL------NGL  249 (313)
T ss_dssp             -C----------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTC------CEE
T ss_pred             -c----------------------cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCC------CEE
Confidence             1                      123466777777766544 4567788888888888544446666666      688


Q ss_pred             hhccccccccCCCchhhhhHHhHhhhCCCCcce-ecchhhhcccccccccCCce
Q psy5270         233 DLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQIMLEPRW  285 (352)
Q Consensus       233 ~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~-~iP~~l~~l~~L~~l~~~~~  285 (352)
                      ++++|+++| .+|..+..+++|++|+|++|+++ .+|.. +++++|+.+....+
T Consensus       250 ~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N  301 (313)
T 1ogq_A          250 DLRNNRIYG-TLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN  301 (313)
T ss_dssp             ECCSSCCEE-CCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSS
T ss_pred             ECcCCcccC-cCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCC
Confidence            999999987 78888888999999999999988 77776 77888877643333

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=3.4e-30  Score=234.71  Aligned_cols=223  Identities=23%  Similarity=0.231  Sum_probs=184.3

Q ss_pred             CCCCEEEccCCcCc---ccccccCCCCCCcEEEccC-CCCC-ccccccCCCCCCCEEEccCCCCCCCCCCCccccCccCc
Q psy5270          25 VNLEILTLFNNQIE---TLPTSLSSLPKLRILNLGM-NRLS-SLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLR   99 (352)
Q Consensus        25 ~~L~~L~L~~N~l~---~ip~~l~~L~~L~~L~L~~-N~l~-~ip~~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~   99 (352)
                      .++++|+|++|.++   .+|+.++++++|++|++++ |+++ .+|..|+++++|++|++++|++++ .+|..|+++++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-AIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-ECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC-cCCHHHhCCCCCC
Confidence            57999999999998   5899999999999999995 9998 889999999999999999999998 7999999999999


Q ss_pred             EEEccCCccc-cchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCC-CccccccchhhhhhhhHHhHHHHH
Q psy5270         100 ALYLGDNDFE-VLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLP-NLVPYCASKFAVRGLMEALAEELR  177 (352)
Q Consensus       100 ~L~l~~N~l~-~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp-~l~~~~~s~~~l~~~~~~l~~~l~  177 (352)
                      +|++++|+++ .+|..++++++|++++++...     ..+.++     ..+..++ .+.                     
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-----l~~~~p-----~~l~~l~~~L~---------------------  177 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNR-----ISGAIP-----DSYGSFSKLFT---------------------  177 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSC-----CEEECC-----GGGGCCCTTCC---------------------
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCc-----ccCcCC-----HHHhhhhhcCc---------------------
Confidence            9999999999 799999999999988776511     111111     1222222 222                     


Q ss_pred             HHHhcCCceeecccCcccccCCccCcccccccCC-CcccCCCCCcccchhhhhhhhhhccccccccCCCchhhhhHHhHh
Q psy5270         178 EDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLS-SLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRA  256 (352)
Q Consensus       178 ~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~-~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~  256 (352)
                       .+++++|++++..|..+..-.++.+++++|+++ .+|..++.++.|      +.|++++|++++ .+|. +..+++|++
T Consensus       178 -~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L------~~L~L~~N~l~~-~~~~-~~~l~~L~~  248 (313)
T 1ogq_A          178 -SMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT------QKIHLAKNSLAF-DLGK-VGLSKNLNG  248 (313)
T ss_dssp             -EEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCC------SEEECCSSEECC-BGGG-CCCCTTCCE
T ss_pred             -EEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCC------CEEECCCCceee-ecCc-ccccCCCCE
Confidence             234667888888887665444889999999998 778888888888      799999999997 5554 889999999


Q ss_pred             hhCCCCcce-ecchhhhcccccccccCCceeee
Q psy5270         257 LYLGDNDFE-VLPAEIGNLKNLQIMLEPRWVIS  288 (352)
Q Consensus       257 L~Ls~N~l~-~iP~~l~~l~~L~~l~~~~~~~~  288 (352)
                      |+|++|+++ .+|..++++++|+.+....+.+.
T Consensus       249 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  281 (313)
T 1ogq_A          249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             EECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             EECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence            999999999 99999999999999966665543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=2e-30  Score=258.00  Aligned_cols=275  Identities=19%  Similarity=0.254  Sum_probs=196.4

Q ss_pred             CCCccEEEeeCCcCc-ccCccccCCCCCCEEEccCCc-Cc--ccccccCCC------CCCcEEEccCCCCCcccc--ccC
Q psy5270           1 MLYITRITLSHNKLK-EIPPGLANLVNLEILTLFNNQ-IE--TLPTSLSSL------PKLRILNLGMNRLSSLPR--GFG   68 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~-~ip~~l~~l~~L~~L~L~~N~-l~--~ip~~l~~L------~~L~~L~L~~N~l~~ip~--~~~   68 (352)
                      +++|++|++++|++. .+|+.|+++++|++|++++|+ ++  .+|..++++      ++|++|++++|+++.+|.  .++
T Consensus       248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~  327 (636)
T 4eco_A          248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ  327 (636)
T ss_dssp             CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHT
T ss_pred             cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhc
Confidence            578999999999998 899999999999999999998 88  489988887      999999999999999999  899


Q ss_pred             CCCCCCEEEccCCCCCCCCCCCccccCccCcEEEccCCccccchhhccCccc-HHHHHHhc-----chhhHhhc---Cce
Q psy5270          69 AFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKN-LQIILETF-----LPDMMEKN---RGH  139 (352)
Q Consensus        69 ~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~-L~~L~l~~-----~p~~~~~~---~g~  139 (352)
                      ++++|+.|++++|+++| .+| .|+++++|++|++++|+++.+|..++++++ |+.|+++.     +|......   ...
T Consensus       328 ~l~~L~~L~L~~N~l~g-~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~  405 (636)
T 4eco_A          328 KMKKLGMLECLYNQLEG-KLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMS  405 (636)
T ss_dssp             TCTTCCEEECCSCCCEE-ECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEE
T ss_pred             cCCCCCEEeCcCCcCcc-chh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccC
Confidence            99999999999999998 799 999999999999999999999999999998 99888765     22221111   122


Q ss_pred             Eeecccccc-------cc-------CCCCccccccchhhhhhhhHHhHHHHH--HHHhcCCceeecccCcccccC-----
Q psy5270         140 IVGISSMAG-------IV-------GLPNLVPYCASKFAVRGLMEALAEELR--EDARNSKIKFTSIFPFMVDTG-----  198 (352)
Q Consensus       140 i~~iss~~~-------l~-------~lp~l~~~~~s~~~l~~~~~~l~~~l~--~~~~~~~n~~~g~~P~~~~~~-----  198 (352)
                      ...++.+.-       +.       ..+.+.....+.+.+..+.......+.  ..+++++|+++.+.+......     
T Consensus       406 ~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~  485 (636)
T 4eco_A          406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFK  485 (636)
T ss_dssp             EEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECT
T ss_pred             EEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccccccc
Confidence            222222111       11       222333444444444433222221111  233456666664333322211     


Q ss_pred             ---CccCcccccccCCCcccCCC--CCcccchhhhhhhhhhccccccccCCCchhhhhHHhHhhhC------CCCcce-e
Q psy5270         199 ---LCKNPKIKMNRLSSLPRGFG--AFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYL------GDNDFE-V  266 (352)
Q Consensus       199 ---~l~~l~l~~n~l~~ip~~~~--~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~L------s~N~l~-~  266 (352)
                         .++.+++++|+++.+|..+.  .++.|      +.|++++|++++  +|..++.+++|++|+|      ++|++. .
T Consensus       486 ~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L------~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~  557 (636)
T 4eco_A          486 NTYLLTSIDLRFNKLTKLSDDFRATTLPYL------VGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE  557 (636)
T ss_dssp             TGGGCCEEECCSSCCCBCCGGGSTTTCTTC------CEEECCSSCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCC
T ss_pred             ccCCccEEECcCCcCCccChhhhhccCCCc------CEEECCCCCCCC--cChhhhcCCCCCEEECCCCcccccCccccc
Confidence               56667777777777777665  66666      577777777774  6777777777777777      445666 7


Q ss_pred             cchhhhcccccccccCCce
Q psy5270         267 LPAEIGNLKNLQIMLEPRW  285 (352)
Q Consensus       267 iP~~l~~l~~L~~l~~~~~  285 (352)
                      +|.+++++++|+.|....+
T Consensus       558 ~p~~l~~l~~L~~L~Ls~N  576 (636)
T 4eco_A          558 WPEGITLCPSLTQLQIGSN  576 (636)
T ss_dssp             CCTTGGGCSSCCEEECCSS
T ss_pred             ChHHHhcCCCCCEEECCCC
Confidence            7777777777777744433

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.95  E-value=5.2e-30  Score=255.01  Aligned_cols=260  Identities=17%  Similarity=0.196  Sum_probs=175.2

Q ss_pred             CccEEEeeCCcCc-ccCccccCCCCCCEEEccCCcC--------------------------------------------
Q psy5270           3 YITRITLSHNKLK-EIPPGLANLVNLEILTLFNNQI--------------------------------------------   37 (352)
Q Consensus         3 ~L~~L~Ls~N~l~-~ip~~l~~l~~L~~L~L~~N~l--------------------------------------------   37 (352)
                      +++.|+|++|.++ .+|+++++|++|++|+|++|.+                                            
T Consensus        82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~  161 (636)
T 4eco_A           82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDL  161 (636)
T ss_dssp             CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred             CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHH
Confidence            6889999999999 8999999999999999998843                                            


Q ss_pred             ----------------------------------cccccccCCCCCCcEEEccCCCCCc------------------ccc
Q psy5270          38 ----------------------------------ETLPTSLSSLPKLRILNLGMNRLSS------------------LPR   65 (352)
Q Consensus        38 ----------------------------------~~ip~~l~~L~~L~~L~L~~N~l~~------------------ip~   65 (352)
                                                        +.||++++++++|++|+|++|+++.                  +|+
T Consensus       162 ~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~  241 (636)
T 4eco_A          162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE  241 (636)
T ss_dssp             HHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS
T ss_pred             HHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch
Confidence                                              3588889999999999999999996                  999


Q ss_pred             ccC--CCCCCCEEEccCCCCCCCCCCCccccCccCcEEEccCCc-ccc--chhhccCc------ccHHHHHHhcchhhHh
Q psy5270          66 GFG--AFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDND-FEV--LPAEIGNL------KNLQIILETFLPDMME  134 (352)
Q Consensus        66 ~~~--~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~-l~~--ip~~~~nl------~~L~~L~l~~~p~~~~  134 (352)
                      +++  ++++|++|++++|++.| .+|..|+++++|++|++++|+ ++.  +|..++++      ++|+.|+++...    
T Consensus       242 ~l~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~----  316 (636)
T 4eco_A          242 DLKWDNLKDLTDVEVYNCPNLT-KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN----  316 (636)
T ss_dssp             CCCGGGCTTCCEEEEECCTTCS-SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC----
T ss_pred             hhhhcccCCCCEEEecCCcCCc-cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc----
Confidence            999  99999999999999998 899999999999999999998 884  89988876      777777665410    


Q ss_pred             hcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHH--HHHHhcCCceeecccCcccccCC-ccCcccccccCC
Q psy5270         135 KNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL--REDARNSKIKFTSIFPFMVDTGL-CKNPKIKMNRLS  211 (352)
Q Consensus       135 ~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l--~~~~~~~~n~~~g~~P~~~~~~~-l~~l~l~~n~l~  211 (352)
                           +..+.....+..++.+.....+.+.+.+.++.+ ..+  ...+++++|+++.+......... ++.+++++|+++
T Consensus       317 -----l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~-~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~  390 (636)
T 4eco_A          317 -----LKTFPVETSLQKMKKLGMLECLYNQLEGKLPAF-GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK  390 (636)
T ss_dssp             -----CSSCCCHHHHTTCTTCCEEECCSCCCEEECCCC-EEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS
T ss_pred             -----CCccCchhhhccCCCCCEEeCcCCcCccchhhh-CCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc
Confidence                 001110002333444433333333333111100 000  02334566666643333334555 777777888877


Q ss_pred             CcccCCCCCc--ccchhhhhhhhhhccccccccCCCchhh-------hhHHhHhhhCCCCcceecchhhh-cccccccc
Q psy5270         212 SLPRGFGAFP--VLEAFSFTTILDLTYNNLNEQSLPGNFF-------MLETLRALYLGDNDFEVLPAEIG-NLKNLQIM  280 (352)
Q Consensus       212 ~ip~~~~~l~--~L~~~~~L~~L~ls~N~l~g~~iP~~~~-------~l~~L~~L~Ls~N~l~~iP~~l~-~l~~L~~l  280 (352)
                      .+|..++.+.  .|      +.|++++|+++| .+|..|.       .+++|++|+|++|+++.+|.++. .+++|+.|
T Consensus       391 ~lp~~~~~~~l~~L------~~L~Ls~N~l~~-~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L  462 (636)
T 4eco_A          391 YIPNIFDAKSVSVM------SAIDFSYNEIGS-VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSI  462 (636)
T ss_dssp             SCCSCCCTTCSSCE------EEEECCSSCTTT-TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEE
T ss_pred             ccchhhhhcccCcc------CEEECcCCcCCC-cchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEE
Confidence            7777665543  44      456666666665 4555555       55556666666666665555432 35555554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.95  E-value=3.1e-29  Score=255.13  Aligned_cols=125  Identities=24%  Similarity=0.352  Sum_probs=84.2

Q ss_pred             CCCccEEEeeCCcCcc------------------cCcccc--CCCCCCEEEccCCcCc-ccccccCCCCCCcEEEccCCC
Q psy5270           1 MLYITRITLSHNKLKE------------------IPPGLA--NLVNLEILTLFNNQIE-TLPTSLSSLPKLRILNLGMNR   59 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~~------------------ip~~l~--~l~~L~~L~L~~N~l~-~ip~~l~~L~~L~~L~L~~N~   59 (352)
                      |++|++|+|++|+|+.                  +|++++  ++++|++|+|++|++. .+|..++++++|+.|++++|+
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~  526 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR  526 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence            4567777777777775                  777766  7777777777777766 677777777777777777776


Q ss_pred             -CCc--cccccCCCC-------CCCEEEccCCCCCCCCCCC--ccccCccCcEEEccCCccccchhhccCcccHHHHHHh
Q psy5270          60 -LSS--LPRGFGAFP-------VLEVLDLTYNNLNEQSLPG--NFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILET  127 (352)
Q Consensus        60 -l~~--ip~~~~~l~-------~L~~L~Ls~N~l~g~~~p~--~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~  127 (352)
                       ++.  +|..+++++       +|+.|++++|+++  .+|.  .|+++++|++|++++|+++.+| .++++++|+.|+++
T Consensus       527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls  603 (876)
T 4ecn_A          527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLD  603 (876)
T ss_dssp             TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECC
T ss_pred             CcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECc
Confidence             663  665544433       6666666666665  3666  6666666666666666666666 66666666655554


Q ss_pred             c
Q psy5270         128 F  128 (352)
Q Consensus       128 ~  128 (352)
                      .
T Consensus       604 ~  604 (876)
T 4ecn_A          604 Y  604 (876)
T ss_dssp             S
T ss_pred             C
Confidence            3

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.95  E-value=5.6e-29  Score=253.28  Aligned_cols=274  Identities=21%  Similarity=0.226  Sum_probs=190.8

Q ss_pred             CCCccEEEeeCCcCc-ccCccccCCCCCCEEEccCCc-Ccc--cccccCCCC-------CCcEEEccCCCCCcccc--cc
Q psy5270           1 MLYITRITLSHNKLK-EIPPGLANLVNLEILTLFNNQ-IET--LPTSLSSLP-------KLRILNLGMNRLSSLPR--GF   67 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~-~ip~~l~~l~~L~~L~L~~N~-l~~--ip~~l~~L~-------~L~~L~L~~N~l~~ip~--~~   67 (352)
                      |++|++|+|++|++. .+|+.|+++++|++|+|++|+ ++.  +|..+++++       +|++|++++|+++.+|.  .+
T Consensus       490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l  569 (876)
T 4ecn_A          490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL  569 (876)
T ss_dssp             CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH
T ss_pred             CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh
Confidence            578999999999988 899999999999999999998 874  888777665       99999999999999999  89


Q ss_pred             CCCCCCCEEEccCCCCCCCCCCCccccCccCcEEEccCCccccchhhccCccc-HHHHHHhcc-----hhhHhhcC---c
Q psy5270          68 GAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKN-LQIILETFL-----PDMMEKNR---G  138 (352)
Q Consensus        68 ~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~-L~~L~l~~~-----p~~~~~~~---g  138 (352)
                      +++++|+.|++++|+++  .+| .|+++++|++|++++|+++.+|..++++++ |+.|+++..     |.......   .
T Consensus       570 ~~L~~L~~L~Ls~N~l~--~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L  646 (876)
T 4ecn_A          570 QKMVKLGLLDCVHNKVR--HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVM  646 (876)
T ss_dssp             TTCTTCCEEECTTSCCC--BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCE
T ss_pred             hcCCCCCEEECCCCCcc--cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCC
Confidence            99999999999999998  588 899999999999999999999999999988 988887752     22111111   1


Q ss_pred             eEeecccccccc------------CCCCccccccchhhhhhhhHHhHHHHH--HHHhcCCceeecccCcccccC------
Q psy5270         139 HIVGISSMAGIV------------GLPNLVPYCASKFAVRGLMEALAEELR--EDARNSKIKFTSIFPFMVDTG------  198 (352)
Q Consensus       139 ~i~~iss~~~l~------------~lp~l~~~~~s~~~l~~~~~~l~~~l~--~~~~~~~n~~~g~~P~~~~~~------  198 (352)
                      ....++.+.-.+            ..+.+.....+.+.+..+...+...+.  ..+++++|+++.+.+......      
T Consensus       647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~n  726 (876)
T 4ecn_A          647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN  726 (876)
T ss_dssp             EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTT
T ss_pred             CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccc
Confidence            222222211111            111333334444444433222211111  234455666663333222211      


Q ss_pred             --CccCcccccccCCCcccCCC--CCcccchhhhhhhhhhccccccccCCCchhhhhHHhHhhhCCC------Ccce-ec
Q psy5270         199 --LCKNPKIKMNRLSSLPRGFG--AFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGD------NDFE-VL  267 (352)
Q Consensus       199 --~l~~l~l~~n~l~~ip~~~~--~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~------N~l~-~i  267 (352)
                        .++.+++++|+++.+|..+.  .++.|      +.|+|++|++++  +|..++.+++|+.|+|++      |++. .+
T Consensus       727 l~~L~~L~Ls~N~L~~lp~~l~~~~l~~L------~~L~Ls~N~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~i  798 (876)
T 4ecn_A          727 TYLLTTIDLRFNKLTSLSDDFRATTLPYL------SNMDVSYNCFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQW  798 (876)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGSTTTCTTC------CEEECCSSCCSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCC
T ss_pred             cCCccEEECCCCCCccchHHhhhccCCCc------CEEEeCCCCCCc--cchhhhcCCCCCEEECCCCCCcccccccccC
Confidence              56667777777777777665  66666      577777777775  677777777777777765      5666 77


Q ss_pred             chhhhcccccccccCCce
Q psy5270         268 PAEIGNLKNLQIMLEPRW  285 (352)
Q Consensus       268 P~~l~~l~~L~~l~~~~~  285 (352)
                      |.+++++++|+.|....+
T Consensus       799 p~~l~~L~~L~~L~Ls~N  816 (876)
T 4ecn_A          799 PTGITTCPSLIQLQIGSN  816 (876)
T ss_dssp             CTTGGGCSSCCEEECCSS
T ss_pred             hHHHhcCCCCCEEECCCC
Confidence            777777777777744433

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=2.2e-28  Score=224.17  Aligned_cols=203  Identities=23%  Similarity=0.264  Sum_probs=174.1

Q ss_pred             CCCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCC-ccccccCC---------C
Q psy5270           1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLS-SLPRGFGA---------F   70 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~-~ip~~~~~---------l   70 (352)
                      +++|++|+|++|.++.+|+.++++++|++|+|++|+++.+|..++++++|++|++++|++. .+|..++.         +
T Consensus       103 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l  182 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL  182 (328)
T ss_dssp             GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred             CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence            4689999999999999999999999999999999999999999999999999999998766 88887765         9


Q ss_pred             CCCCEEEccCCCCCCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeecccccccc
Q psy5270          71 PVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIV  150 (352)
Q Consensus        71 ~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~  150 (352)
                      ++|++|++++|+++  .+|..++++++|++|++++|+++.+|+.++++++|++|+++.                      
T Consensus       183 ~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~----------------------  238 (328)
T 4fcg_A          183 VNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG----------------------  238 (328)
T ss_dssp             TTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTT----------------------
T ss_pred             CCCCEEECcCCCcC--cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcC----------------------
Confidence            99999999999998  589999999999999999999999999998888877654442                      


Q ss_pred             CCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcc-cccCCccCcccccccCC-CcccCCCCCcccchhhh
Q psy5270         151 GLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFM-VDTGLCKNPKIKMNRLS-SLPRGFGAFPVLEAFSF  228 (352)
Q Consensus       151 ~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~-~~~~~l~~l~l~~n~l~-~ip~~~~~l~~L~~~~~  228 (352)
                                                        |.+.+.+|.. .....++.+++++|++. .+|..++.++.|     
T Consensus       239 ----------------------------------n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L-----  279 (328)
T 4fcg_A          239 ----------------------------------CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL-----  279 (328)
T ss_dssp             ----------------------------------CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTC-----
T ss_pred             ----------------------------------CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCC-----
Confidence                                              3333334432 24556788899988766 899988888888     


Q ss_pred             hhhhhhccccccccCCCchhhhhHHhHhhhCCCCcceecc
Q psy5270         229 TTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP  268 (352)
Q Consensus       229 L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP  268 (352)
                       +.|++++|++.| .+|+.++++++|+.+++..|.+..++
T Consensus       280 -~~L~L~~n~~~~-~iP~~l~~L~~L~~l~l~~~~~~~l~  317 (328)
T 4fcg_A          280 -EKLDLRGCVNLS-RLPSLIAQLPANCIILVPPHLQAQLD  317 (328)
T ss_dssp             -CEEECTTCTTCC-CCCGGGGGSCTTCEEECCGGGSCC--
T ss_pred             -CEEeCCCCCchh-hccHHHhhccCceEEeCCHHHHHHHh
Confidence             799999999999 89999999999999999887766433

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.94  E-value=5.1e-28  Score=231.14  Aligned_cols=126  Identities=28%  Similarity=0.430  Sum_probs=108.0

Q ss_pred             CCccEEEeeCCcCccc-CccccCCCCCCEEEccCCcCc-cc-ccccCCCCCCcEEEccCCCCCcc-ccccCCCCCCCEEE
Q psy5270           2 LYITRITLSHNKLKEI-PPGLANLVNLEILTLFNNQIE-TL-PTSLSSLPKLRILNLGMNRLSSL-PRGFGAFPVLEVLD   77 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~i-p~~l~~l~~L~~L~L~~N~l~-~i-p~~l~~L~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~   77 (352)
                      ++|++|||++|.++.+ |..|+++++|++|++++|.+. .+ |..|.++++|++|++++|+++.+ |..|+++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            4689999999999955 778999999999999999987 66 45789999999999999999955 77899999999999


Q ss_pred             ccCCCCCCCCCCCc--cccCccCcEEEccCCccccc-hhh-ccCcccHHHHHHhc
Q psy5270          78 LTYNNLNEQSLPGN--FFMLETLRALYLGDNDFEVL-PAE-IGNLKNLQIILETF  128 (352)
Q Consensus        78 Ls~N~l~g~~~p~~--~~~l~~L~~L~l~~N~l~~i-p~~-~~nl~~L~~L~l~~  128 (352)
                      +++|++++ .+|..  |+++++|++|++++|+++.+ |.. ++++++|++++++.
T Consensus       110 L~~n~l~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  163 (455)
T 3v47_A          110 LTQCNLDG-AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF  163 (455)
T ss_dssp             CTTSCCBT-HHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTT
T ss_pred             CCCCCCCc-cccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCC
Confidence            99999987 45554  88999999999999999965 555 78888888887765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=1.1e-27  Score=236.58  Aligned_cols=273  Identities=22%  Similarity=0.182  Sum_probs=129.7

Q ss_pred             CCccEEEeeCCcCcccC-ccccCCCCCCEEEccCCcCcccc-cccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEc
Q psy5270           2 LYITRITLSHNKLKEIP-PGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDL   78 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip-~~l~~l~~L~~L~L~~N~l~~ip-~~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~L   78 (352)
                      ++|++|+|++|.++.+| ..|+++++|++|+|++|.++.+| ..|+++++|++|+|++|.++.+|+. |+++++|+.|++
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  154 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM  154 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence            45555555555555333 24555555555555555555443 2345555555555555555555544 355555555555


Q ss_pred             cCCCCCCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchh--hHhhcCceEeeccccc--cc--cCC
Q psy5270          79 TYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPD--MMEKNRGHIVGISSMA--GI--VGL  152 (352)
Q Consensus        79 s~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~--~~~~~~g~i~~iss~~--~l--~~l  152 (352)
                      ++|.+++ ..|..|+++++|++|++++|+++.+|  ++.+++|+.++++...-  ...........++.+.  .+  ...
T Consensus       155 s~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~  231 (597)
T 3oja_B          155 SNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN  231 (597)
T ss_dssp             CSSCCCB-CCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCC
T ss_pred             eCCcCCC-CChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccC
Confidence            5555554 34445555555555555555555443  22222332222221000  0000000000000000  00  001


Q ss_pred             CCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc-ccCCccCcccccccCCCcccCCCCCcccchhhhhhh
Q psy5270         153 PNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV-DTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTI  231 (352)
Q Consensus       153 p~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~-~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~  231 (352)
                      +.+.....+.+.+.+........-...+++++|.+.+..|..+ .+..++.+++++|+++.+|..++.++.|      +.
T Consensus       232 ~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L------~~  305 (597)
T 3oja_B          232 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTL------KV  305 (597)
T ss_dssp             SCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTC------CE
T ss_pred             CCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCC------cE
Confidence            1222222222222221000000000233455666666655433 4455666666666666666665555555      56


Q ss_pred             hhhccccccccCCCchhhhhHHhHhhhCCCCcceecchhhhcccccccccCCceee
Q psy5270         232 LDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIMLEPRWVI  287 (352)
Q Consensus       232 L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP~~l~~l~~L~~l~~~~~~~  287 (352)
                      |+|++|.++  .+|..++.+++|++|+|++|.++.+|  ++.+++|+.+....++.
T Consensus       306 L~Ls~N~l~--~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~  357 (597)
T 3oja_B          306 LDLSHNHLL--HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDW  357 (597)
T ss_dssp             EECCSSCCC--CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCE
T ss_pred             EECCCCCCC--ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCC
Confidence            777777776  36666777777777777777776554  55556666665444444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.94  E-value=1.7e-27  Score=223.19  Aligned_cols=124  Identities=25%  Similarity=0.411  Sum_probs=70.6

Q ss_pred             CCccEEEeeCCcCcccCcc-ccCCCCCCEEEccCCcCcccc-cccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEc
Q psy5270           2 LYITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDL   78 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~ip-~~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~L   78 (352)
                      +++++|++++|.++.+|+. +.++++|++|++++|.++.+| ..++.+++|++|++++|+++.+|+ .|+++++|+.|++
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            4556666666666656554 455566666666666666443 355666666666666666664433 3566666666666


Q ss_pred             cCCCCCCCCCCCc-cccCccCcEEEccCCccccch-hhccCcccHHHHHHh
Q psy5270          79 TYNNLNEQSLPGN-FFMLETLRALYLGDNDFEVLP-AEIGNLKNLQIILET  127 (352)
Q Consensus        79 s~N~l~g~~~p~~-~~~l~~L~~L~l~~N~l~~ip-~~~~nl~~L~~L~l~  127 (352)
                      ++|++++  +|.. |+++++|++|++++|+++.++ ..++++++|+.|+++
T Consensus       125 ~~n~l~~--l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  173 (390)
T 3o6n_A          125 ERNDLSS--LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS  173 (390)
T ss_dssp             CSSCCCC--CCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECC
T ss_pred             CCCccCc--CCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECC
Confidence            6666653  4443 455666666666666666443 345555555555544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.93  E-value=3.5e-27  Score=233.34  Aligned_cols=125  Identities=26%  Similarity=0.359  Sum_probs=88.2

Q ss_pred             CccEEEeeCCcCcccCcc-ccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCcc-ccccCCCCCCCEEEccC
Q psy5270           3 YITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL-PRGFGAFPVLEVLDLTY   80 (352)
Q Consensus         3 ~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~Ls~   80 (352)
                      +|+.|++++|.++.+|+. |+++++|++|++++|+++.+|+.++.+++|++|++++|+++.+ |..++++++|+.|++++
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  334 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG  334 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence            567777777777765544 7777777777777777777777777777777777777777754 44677777777777777


Q ss_pred             CCCCCCCCCC-ccccCccCcEEEccCCccccc---hhhccCcccHHHHHHhc
Q psy5270          81 NNLNEQSLPG-NFFMLETLRALYLGDNDFEVL---PAEIGNLKNLQIILETF  128 (352)
Q Consensus        81 N~l~g~~~p~-~~~~l~~L~~L~l~~N~l~~i---p~~~~nl~~L~~L~l~~  128 (352)
                      |.+.+ .+|. .++++++|++|++++|+++.+   |..++++++|+.++++.
T Consensus       335 n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~  385 (606)
T 3t6q_A          335 NTKRL-ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY  385 (606)
T ss_dssp             CSSCC-BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCS
T ss_pred             CCccc-ccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCC
Confidence            77765 4554 367777777777777777643   55667777776666554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.93  E-value=3.4e-27  Score=225.39  Aligned_cols=117  Identities=24%  Similarity=0.322  Sum_probs=100.9

Q ss_pred             CCCccEEEeeCCcCc-ccC-ccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCc-cccc--cCCCCCCC
Q psy5270           1 MLYITRITLSHNKLK-EIP-PGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSS-LPRG--FGAFPVLE   74 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~-~ip-~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~-ip~~--~~~l~~L~   74 (352)
                      +++|++|++++|.+. .+| ..|+++++|++|+|++|+++.+ |..++++++|++|++++|+++. +|..  ++++++|+
T Consensus        53 l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~  132 (455)
T 3v47_A           53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE  132 (455)
T ss_dssp             CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCC
T ss_pred             CccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCC
Confidence            578999999999997 775 5689999999999999999955 7899999999999999999984 5555  89999999


Q ss_pred             EEEccCCCCCCCCCCCc-cccCccCcEEEccCCcccc-chhhccCc
Q psy5270          75 VLDLTYNNLNEQSLPGN-FFMLETLRALYLGDNDFEV-LPAEIGNL  118 (352)
Q Consensus        75 ~L~Ls~N~l~g~~~p~~-~~~l~~L~~L~l~~N~l~~-ip~~~~nl  118 (352)
                      .|++++|++++ ..|.. ++++++|++|++++|+++. .|..++++
T Consensus       133 ~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  177 (455)
T 3v47_A          133 MLVLRDNNIKK-IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF  177 (455)
T ss_dssp             EEECCSSBCCS-CCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG
T ss_pred             EEECCCCccCc-cCcccccCCCCcccEEeCCCCcccccChhhhhcc
Confidence            99999999997 56776 8899999999999999984 45566554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.93  E-value=1.1e-25  Score=206.29  Aligned_cols=238  Identities=26%  Similarity=0.319  Sum_probs=178.2

Q ss_pred             CccEEEeeCCcCcccCccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCcc-ccccCCCCCCCEEEccC
Q psy5270           3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSL-PRGFGAFPVLEVLDLTY   80 (352)
Q Consensus         3 ~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~Ls~   80 (352)
                      +++.++++++.++++|..+.  ++|++|++++|.++.+ |..+.++++|++|++++|+++.+ |..|+++++|+.|++++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred             cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence            57889999999999998875  5899999999999866 45899999999999999999966 67799999999999999


Q ss_pred             CCCCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhcchhhHhhcCceEeec-cccccccCCCCcccc
Q psy5270          81 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETFLPDMMEKNRGHIVGI-SSMAGIVGLPNLVPY  158 (352)
Q Consensus        81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~~p~~~~~~~g~i~~i-ss~~~l~~lp~l~~~  158 (352)
                      |+++.  +|..+.  ++|++|++++|+++.+|. .++++++|+.++++...         +... .....+..+ .+.  
T Consensus       112 n~l~~--l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~---------l~~~~~~~~~~~~l-~L~--  175 (332)
T 2ft3_A          112 NHLVE--IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP---------LENSGFEPGAFDGL-KLN--  175 (332)
T ss_dssp             SCCCS--CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC---------CBGGGSCTTSSCSC-CCS--
T ss_pred             CcCCc--cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc---------cccCCCCcccccCC-ccC--
Confidence            99974  787776  789999999999997765 57888888877665411         1000 000111111 111  


Q ss_pred             ccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcc-cCCCCCcccchhhhhhhhhhccc
Q psy5270         159 CASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLP-RGFGAFPVLEAFSFTTILDLTYN  237 (352)
Q Consensus       159 ~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip-~~~~~l~~L~~~~~L~~L~ls~N  237 (352)
                                          .+++++|+++++... .. ..++.+++++|+++.++ ..+..++.|      +.|++++|
T Consensus       176 --------------------~L~l~~n~l~~l~~~-~~-~~L~~L~l~~n~i~~~~~~~l~~l~~L------~~L~L~~N  227 (332)
T 2ft3_A          176 --------------------YLRISEAKLTGIPKD-LP-ETLNELHLDHNKIQAIELEDLLRYSKL------YRLGLGHN  227 (332)
T ss_dssp             --------------------CCBCCSSBCSSCCSS-SC-SSCSCCBCCSSCCCCCCTTSSTTCTTC------SCCBCCSS
T ss_pred             --------------------EEECcCCCCCccCcc-cc-CCCCEEECCCCcCCccCHHHhcCCCCC------CEEECCCC
Confidence                                123445566553322 21 56788889999998665 567777776      68999999


Q ss_pred             cccccCCCchhhhhHHhHhhhCCCCcceecchhhhcccccccccCCceee
Q psy5270         238 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIMLEPRWVI  287 (352)
Q Consensus       238 ~l~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP~~l~~l~~L~~l~~~~~~~  287 (352)
                      ++++ ..|..++.+++|++|+|++|+++.+|.+++.+++|+.+....+.+
T Consensus       228 ~l~~-~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l  276 (332)
T 2ft3_A          228 QIRM-IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNI  276 (332)
T ss_dssp             CCCC-CCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCC
T ss_pred             cCCc-CChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCC
Confidence            9987 566688999999999999999999999999999999886555444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.93  E-value=2e-26  Score=211.13  Aligned_cols=240  Identities=22%  Similarity=0.314  Sum_probs=164.9

Q ss_pred             CccEEEeeCCcCcccCccccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCcc-ccccCCCCCCCEEEccC
Q psy5270           3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSL-PRGFGAFPVLEVLDLTY   80 (352)
Q Consensus         3 ~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~Ls~   80 (352)
                      +++.++++++.++.+|..+.  +++++|++++|+++.+|+ .++++++|++|++++|+++.+ |..|+++++|+.|++++
T Consensus        32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK  109 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence            57788888888888887765  478888888888886654 788888888888888888866 67788888888888888


Q ss_pred             CCCCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccc
Q psy5270          81 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYC  159 (352)
Q Consensus        81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~  159 (352)
                      |+++.  +|..+.  ++|++|++++|+++.++. .++++++|+.++++...-     ..  .+ .....+..++.+... 
T Consensus       110 n~l~~--l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-----~~--~~-~~~~~~~~l~~L~~L-  176 (330)
T 1xku_A          110 NQLKE--LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL-----KS--SG-IENGAFQGMKKLSYI-  176 (330)
T ss_dssp             SCCSB--CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCC-----CG--GG-BCTTGGGGCTTCCEE-
T ss_pred             CcCCc--cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcC-----Cc--cC-cChhhccCCCCcCEE-
Confidence            88874  677665  688888888888886554 577787777766554110     00  00 001122223333222 


Q ss_pred             cchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCc-ccCCCCCcccchhhhhhhhhhcccc
Q psy5270         160 ASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSL-PRGFGAFPVLEAFSFTTILDLTYNN  238 (352)
Q Consensus       160 ~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~i-p~~~~~l~~L~~~~~L~~L~ls~N~  238 (352)
                                           .+++|.++.+... .. ..++.+++++|+++.+ |..++.++.|      +.|++++|.
T Consensus       177 ---------------------~l~~n~l~~l~~~-~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L------~~L~Ls~n~  227 (330)
T 1xku_A          177 ---------------------RIADTNITTIPQG-LP-PSLTELHLDGNKITKVDAASLKGLNNL------AKLGLSFNS  227 (330)
T ss_dssp             ---------------------ECCSSCCCSCCSS-CC-TTCSEEECTTSCCCEECTGGGTTCTTC------CEEECCSSC
T ss_pred             ---------------------ECCCCccccCCcc-cc-ccCCEEECCCCcCCccCHHHhcCCCCC------CEEECCCCc
Confidence                                 2334444432221 11 4567778888888754 5566666666      678888888


Q ss_pred             ccccCCCchhhhhHHhHhhhCCCCcceecchhhhcccccccccCCceee
Q psy5270         239 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIMLEPRWVI  287 (352)
Q Consensus       239 l~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP~~l~~l~~L~~l~~~~~~~  287 (352)
                      +++ ..|..+..+++|++|+|++|+++.+|.+++.+++|+.+....+.+
T Consensus       228 l~~-~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i  275 (330)
T 1xku_A          228 ISA-VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI  275 (330)
T ss_dssp             CCE-ECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCC
T ss_pred             Cce-eChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcC
Confidence            876 456678888888888888888888888888888888775544443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=1.3e-26  Score=210.19  Aligned_cols=221  Identities=22%  Similarity=0.284  Sum_probs=107.5

Q ss_pred             CccEEEeeCCcCcccCcc-ccCCCCCCEEEccCCcCccc---ccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEc
Q psy5270           3 YITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETL---PTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDL   78 (352)
Q Consensus         3 ~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~i---p~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L   78 (352)
                      +|++|++++|+++.+|++ |+++++|++|++++|+++.+   |..+..+++|++|++++|.++.+|..+..+++|+.|++
T Consensus        29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l  108 (306)
T 2z66_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF  108 (306)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEEC
T ss_pred             CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEEC
Confidence            445555555555555443 34555555555555555422   34444455555555555555555555555555555555


Q ss_pred             cCCCCCCCCCCCccccCccCcEEEccCCccc-cchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccc
Q psy5270          79 TYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVP  157 (352)
Q Consensus        79 s~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~-~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~  157 (352)
                      ++|++++...+..+..+++|++|++++|+++ ..|..++++++|+.++++                              
T Consensus       109 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~------------------------------  158 (306)
T 2z66_A          109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA------------------------------  158 (306)
T ss_dssp             TTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT------------------------------
T ss_pred             CCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECC------------------------------
Confidence            5555543111124455555555555555554 233344444444433332                              


Q ss_pred             cccchhhhhhhhHHhHHHHHHHHhcCCceeec-ccCcc-cccCCccCcccccccCCCc-ccCCCCCcccchhhhhhhhhh
Q psy5270         158 YCASKFAVRGLMEALAEELREDARNSKIKFTS-IFPFM-VDTGLCKNPKIKMNRLSSL-PRGFGAFPVLEAFSFTTILDL  234 (352)
Q Consensus       158 ~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g-~~P~~-~~~~~l~~l~l~~n~l~~i-p~~~~~l~~L~~~~~L~~L~l  234 (352)
                                                +|.+.+ ..|.. .....++.+++++|+++.+ |..++.++.|      +.|++
T Consensus       159 --------------------------~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------~~L~L  206 (306)
T 2z66_A          159 --------------------------GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL------QVLNM  206 (306)
T ss_dssp             --------------------------TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC------CEEEC
T ss_pred             --------------------------CCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC------CEEEC
Confidence                                      333333 22221 1334455555666666543 4445555444      45666


Q ss_pred             ccccccccCCCchhhhhHHhHhhhCCCCcce-ecchhhhcc-cccccccCCcee
Q psy5270         235 TYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNL-KNLQIMLEPRWV  286 (352)
Q Consensus       235 s~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~-~iP~~l~~l-~~L~~l~~~~~~  286 (352)
                      ++|.+++ ..+..+..+++|++|||++|+++ .+|..++.+ ++|+.+....++
T Consensus       207 ~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          207 SHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             TTSCCSB-CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             CCCccCc-cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence            6666654 33335555666666666666665 445555555 355555433333

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.93  E-value=3.1e-27  Score=221.53  Aligned_cols=124  Identities=27%  Similarity=0.366  Sum_probs=107.2

Q ss_pred             CCCccEEEeeCCcCcccCc-cccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEE
Q psy5270           1 MLYITRITLSHNKLKEIPP-GLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLD   77 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~~ip~-~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~   77 (352)
                      +++|++|++++|.++.+|+ .|+++++|++|++++|.++.+ |..++++++|++|++++|+++.+|.. |+++++|+.|+
T Consensus        68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  147 (390)
T 3o6n_A           68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS  147 (390)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence            5789999999999997765 799999999999999999966 55789999999999999999999987 58999999999


Q ss_pred             ccCCCCCCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHh
Q psy5270          78 LTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILET  127 (352)
Q Consensus        78 Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~  127 (352)
                      +++|++++ ..|..|+++++|++|++++|+++.++  ++.+++|+.++++
T Consensus       148 L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~  194 (390)
T 3o6n_A          148 MSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVS  194 (390)
T ss_dssp             CCSSCCCB-CCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECC
T ss_pred             CCCCccCc-cChhhccCCCCCCEEECCCCcCCccc--cccccccceeecc
Confidence            99999997 56778999999999999999999764  3444555544443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.93  E-value=4.9e-26  Score=218.86  Aligned_cols=279  Identities=20%  Similarity=0.220  Sum_probs=184.1

Q ss_pred             CCccEEEeeCCcCccc-CccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEc
Q psy5270           2 LYITRITLSHNKLKEI-PPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDL   78 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~i-p~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~L   78 (352)
                      +++++|||++|+++.+ |..|.++++|++|+|++|.++.+ |..|+++++|++|+|++|+++.+|.. |+++++|+.|++
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            4678889999998865 45788888899999999988855 77888888899999999988888764 788888888888


Q ss_pred             cCCCCCCCCCCCccccCccCcEEEccCCccccc-hhhccCcccHHHHHHhcc-----h-hhHhhc-CceEeeccc-----
Q psy5270          79 TYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIGNLKNLQIILETFL-----P-DMMEKN-RGHIVGISS-----  145 (352)
Q Consensus        79 s~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~i-p~~~~nl~~L~~L~l~~~-----p-~~~~~~-~g~i~~iss-----  145 (352)
                      ++|++++ ..|..|.++++|++|++++|+++.+ |..|+++++|+.|+++..     + ..+... ......+..     
T Consensus       112 s~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~  190 (477)
T 2id5_A          112 SENKIVI-LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA  190 (477)
T ss_dssp             TTSCCCE-ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred             CCCcccc-CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence            8888887 5677888888888888888888854 457777777777766541     1 111110 011111110     


Q ss_pred             --cccccCCCCccccccchhhhhhhhH-HhHH-HHHHHHhcCCceeecccCcc-cccCCccCcccccccCCCccc-CCCC
Q psy5270         146 --MAGIVGLPNLVPYCASKFAVRGLME-ALAE-ELREDARNSKIKFTSIFPFM-VDTGLCKNPKIKMNRLSSLPR-GFGA  219 (352)
Q Consensus       146 --~~~l~~lp~l~~~~~s~~~l~~~~~-~l~~-~l~~~~~~~~n~~~g~~P~~-~~~~~l~~l~l~~n~l~~ip~-~~~~  219 (352)
                        ...+..++.+.....+.+...+... .... .-...+++++|+++++.+.. .....++.+++++|+++.++. .+..
T Consensus       191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  270 (477)
T 2id5_A          191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE  270 (477)
T ss_dssp             ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred             eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence              0122223333322222211110000 0000 00012234455555443322 245567778888888886554 4556


Q ss_pred             CcccchhhhhhhhhhccccccccCCCchhhhhHHhHhhhCCCCcceecch-hhhcccccccccCCceeee
Q psy5270         220 FPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIMLEPRWVIS  288 (352)
Q Consensus       220 l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP~-~l~~l~~L~~l~~~~~~~~  288 (352)
                      ++.|      +.|+|++|++++ ..|..|..+++|++|+|++|+++.+|. .+.++++|+.+....++..
T Consensus       271 l~~L------~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          271 LLRL------QEIQLVGGQLAV-VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             CTTC------CEEECCSSCCSE-ECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             cccC------CEEECCCCccce-ECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            6666      689999999987 678889999999999999999996665 4688899998876666653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.92  E-value=3.2e-26  Score=226.47  Aligned_cols=81  Identities=15%  Similarity=0.160  Sum_probs=47.2

Q ss_pred             hhhhhhccccccccCCCchhhhhHHhHhhhCCCCcce-ecchhhhcccccccccCCceee------eccccccCCccccc
Q psy5270         229 TTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQIMLEPRWVI------SMGSCANGGGYYHY  301 (352)
Q Consensus       229 L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~-~iP~~l~~l~~L~~l~~~~~~~------~~~~~~~~~~~~~~  301 (352)
                      |+.|++++|.+++..+|..++.+++|++|+|++|+++ .+|..++++++|+.+....+.+      ....++.. ..+++
T Consensus       450 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~L~l  528 (606)
T 3vq2_A          450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL-STLDC  528 (606)
T ss_dssp             CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTC-CEEEC
T ss_pred             CCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcC-CEEEC
Confidence            3566677776665225666777777777777777777 4455677777777764333322      22223333 24666


Q ss_pred             ccccccCCC
Q psy5270         302 SYSVVRGCD  310 (352)
Q Consensus       302 ~~~~~~~~~  310 (352)
                      +++.+..++
T Consensus       529 ~~N~l~~~p  537 (606)
T 3vq2_A          529 SFNRIETSK  537 (606)
T ss_dssp             TTSCCCCEE
T ss_pred             CCCcCcccC
Confidence            666665443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.92  E-value=1.4e-26  Score=226.34  Aligned_cols=127  Identities=28%  Similarity=0.383  Sum_probs=105.6

Q ss_pred             CCccEEEeeCCcCccc-CccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEc
Q psy5270           2 LYITRITLSHNKLKEI-PPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDL   78 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~i-p~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~L   78 (352)
                      ++|++||+++|+++.+ |.+|+++++|++|++++|+++.+ |..|+++++|++|++++|+++.+|+. |+++++|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            4688999999999855 56789999999999999999865 46889999999999999999977665 899999999999


Q ss_pred             cCCCCCCCCCCCccccCccCcEEEccCCc-cccch-hhccCcccHHHHHHhc
Q psy5270          79 TYNNLNEQSLPGNFFMLETLRALYLGDND-FEVLP-AEIGNLKNLQIILETF  128 (352)
Q Consensus        79 s~N~l~g~~~p~~~~~l~~L~~L~l~~N~-l~~ip-~~~~nl~~L~~L~l~~  128 (352)
                      ++|++++..+|..++++++|++|++++|+ +..+| ..++++++|+.++++.
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~  157 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA  157 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC
Confidence            99999864467788889999999999998 45776 4788888888877664

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.92  E-value=4.2e-26  Score=210.23  Aligned_cols=255  Identities=22%  Similarity=0.322  Sum_probs=142.4

Q ss_pred             CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCC
Q psy5270           2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYN   81 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N   81 (352)
                      ++|++|++++|.++.+|. +..+++|++|++++|+++.+|+ +..+++|++|++++|+++.+| .++++++|++|++++|
T Consensus        44 ~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n  120 (347)
T 4fmz_A           44 ESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNED  120 (347)
T ss_dssp             TTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTS
T ss_pred             ccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCC
Confidence            345555555555554443 4455555555555555554444 555555555555555555443 3455555555555555


Q ss_pred             CCCCCCCCCccccCccCcEEEccCC-----------------------ccccchhhccCcccHHHHHHhcchhhHhhcCc
Q psy5270          82 NLNEQSLPGNFFMLETLRALYLGDN-----------------------DFEVLPAEIGNLKNLQIILETFLPDMMEKNRG  138 (352)
Q Consensus        82 ~l~g~~~p~~~~~l~~L~~L~l~~N-----------------------~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g  138 (352)
                      .+++  +|. +..+++|++|++++|                       .++.++. ++++++|+.++++..         
T Consensus       121 ~i~~--~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n---------  187 (347)
T 4fmz_A          121 NISD--ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYN---------  187 (347)
T ss_dssp             CCCC--CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTS---------
T ss_pred             cccC--chh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCC---------
Confidence            5543  232 444445555555554                       4443332 344444444333321         


Q ss_pred             eEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCC
Q psy5270         139 HIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFG  218 (352)
Q Consensus       139 ~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~  218 (352)
                      .+..   ...+..++.+.....+.+.+..........-...+++++|.+++..+ ......++.+++++|+++.++ .+.
T Consensus       188 ~l~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~  262 (347)
T 4fmz_A          188 QIED---ISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN-AVK  262 (347)
T ss_dssp             CCCC---CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGT
T ss_pred             cccc---cccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCCh-hHh
Confidence            1111   11123333443333333333322210000001234566777777655 456677888999999998774 355


Q ss_pred             CCcccchhhhhhhhhhccccccccCCCchhhhhHHhHhhhCCCCcce-ecchhhhcccccccccCCcee
Q psy5270         219 AFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQIMLEPRWV  286 (352)
Q Consensus       219 ~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~-~iP~~l~~l~~L~~l~~~~~~  286 (352)
                      .++.|      +.|++++|++++  + +.+..+++|+.|++++|+++ ..|..++++++|+.+....++
T Consensus       263 ~l~~L------~~L~l~~n~l~~--~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          263 DLTKL------KMLNVGSNQISD--I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             TCTTC------CEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred             cCCCc------CEEEccCCccCC--C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence            55555      799999999985  4 46889999999999999999 677789999999988544443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.92  E-value=1.6e-25  Score=200.93  Aligned_cols=120  Identities=28%  Similarity=0.401  Sum_probs=84.3

Q ss_pred             cEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccc-cccCCCCCCcEEEccCCCCCcc-ccccCCCCCCCEEEccCCC
Q psy5270           5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSL-PRGFGAFPVLEVLDLTYNN   82 (352)
Q Consensus         5 ~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip-~~l~~L~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~Ls~N~   82 (352)
                      +.++.+++.++.+|.++.  ++|++|++++|.++.+| ..+.++++|++|++++|+++.+ |..|+++++|+.|++++|.
T Consensus        14 ~~~~c~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             CEEECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             eEEEcCcCCcccCCcCCC--CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence            467777777777776553  47778888887777654 4677777788888877777755 5567777778888887776


Q ss_pred             -CCCCCCCCccccCccCcEEEccCCccccc-hhhccCcccHHHHHHh
Q psy5270          83 -LNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIGNLKNLQIILET  127 (352)
Q Consensus        83 -l~g~~~p~~~~~l~~L~~L~l~~N~l~~i-p~~~~nl~~L~~L~l~  127 (352)
                       +++ ..|..|..+++|++|++++|+++.+ |..++++++|++++++
T Consensus        92 ~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  137 (285)
T 1ozn_A           92 QLRS-VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ  137 (285)
T ss_dssp             TCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             Cccc-cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECC
Confidence             654 3466777777788888888777754 4566666666654433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.92  E-value=3.4e-26  Score=218.69  Aligned_cols=117  Identities=21%  Similarity=0.265  Sum_probs=104.3

Q ss_pred             CCCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccC
Q psy5270           1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTY   80 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~   80 (352)
                      +++|++||+++|.++.+| +++.+++|++|++++|+++.+|  ++.+++|++|++++|+++.+|  ++++++|++|++++
T Consensus        41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~  115 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDT  115 (457)
T ss_dssp             HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCS
T ss_pred             cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCC
Confidence            468999999999999887 7899999999999999999886  899999999999999999886  89999999999999


Q ss_pred             CCCCCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhc
Q psy5270          81 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETF  128 (352)
Q Consensus        81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~  128 (352)
                      |++++  +|  ++++++|++|++++|+++.+|  ++++++|++++++.
T Consensus       116 N~l~~--l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~  157 (457)
T 3bz5_A          116 NKLTK--LD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHL  157 (457)
T ss_dssp             SCCSC--CC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTT
T ss_pred             CcCCe--ec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCC
Confidence            99987  55  889999999999999999875  77888887777665

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.92  E-value=3e-25  Score=219.47  Aligned_cols=245  Identities=20%  Similarity=0.219  Sum_probs=190.9

Q ss_pred             CCCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCC-ccccc-cCCCCCCCEEE
Q psy5270           1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLS-SLPRG-FGAFPVLEVLD   77 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~-~ip~~-~~~l~~L~~L~   77 (352)
                      +++|++|++++|+++++|++++++++|++|++++|.++.+ |..++.+++|++|++++|.+. .+|.. ++++++|+.|+
T Consensus       277 l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  356 (606)
T 3t6q_A          277 FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD  356 (606)
T ss_dssp             CTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred             ccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence            4689999999999999999999999999999999999965 668999999999999999998 77765 89999999999


Q ss_pred             ccCCCCCCCCC--CCccccCccCcEEEccCCcccc-chhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCC
Q psy5270          78 LTYNNLNEQSL--PGNFFMLETLRALYLGDNDFEV-LPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPN  154 (352)
Q Consensus        78 Ls~N~l~g~~~--p~~~~~l~~L~~L~l~~N~l~~-ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~  154 (352)
                      +++|++++ ..  |..++++++|++|++++|+++. .|..++++++|+.++++..         .+........+..++.
T Consensus       357 l~~n~l~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n---------~l~~~~~~~~~~~l~~  426 (606)
T 3t6q_A          357 LSHDDIET-SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT---------RLKVKDAQSPFQNLHL  426 (606)
T ss_dssp             CCSSCCCE-EEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC---------CEECCTTCCTTTTCTT
T ss_pred             CCCCcccc-ccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC---------cCCCcccchhhhCccc
Confidence            99999987 33  7789999999999999999985 4668888888888776641         1221111122333444


Q ss_pred             ccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc-ccCCccCcccccccCCC--cc--cCCCCCcccchhhhh
Q psy5270         155 LVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV-DTGLCKNPKIKMNRLSS--LP--RGFGAFPVLEAFSFT  229 (352)
Q Consensus       155 l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~-~~~~l~~l~l~~n~l~~--ip--~~~~~l~~L~~~~~L  229 (352)
                      +...                      ++++|.+.+..|..+ ..+.++.+++++|+++.  +|  ..++.++.|      
T Consensus       427 L~~L----------------------~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L------  478 (606)
T 3t6q_A          427 LKVL----------------------NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL------  478 (606)
T ss_dssp             CCEE----------------------ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC------
T ss_pred             CCEE----------------------ECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCc------
Confidence            3322                      345666666666543 46678888999998873  23  345555555      


Q ss_pred             hhhhhccccccccCCCchhhhhHHhHhhhCCCCcce-ecchhhhcccccccccCCce
Q psy5270         230 TILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQIMLEPRW  285 (352)
Q Consensus       230 ~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~-~iP~~l~~l~~L~~l~~~~~  285 (352)
                      +.|++++|++++ ..|..|+.+++|++|+|++|+++ .+|..++++++| .+....+
T Consensus       479 ~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N  533 (606)
T 3t6q_A          479 EILVLSFCDLSS-IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN  533 (606)
T ss_dssp             CEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS
T ss_pred             cEEECCCCccCc-cChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC
Confidence            789999999987 67888999999999999999998 778889998888 6644433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.92  E-value=2.2e-26  Score=223.51  Aligned_cols=116  Identities=23%  Similarity=0.309  Sum_probs=84.0

Q ss_pred             CCccEEEeeCCcCcccC-ccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEcc
Q psy5270           2 LYITRITLSHNKLKEIP-PGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLT   79 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip-~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls   79 (352)
                      ++|++||+++|.++.+| ..|+++++|++|+|++|+++.+ |..|+++++|++|++++|+++.+|..  .+++|++|+++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~   98 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLS   98 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEecc
Confidence            35777788887777555 4677777788888888877755 66777778888888888877777776  67778888888


Q ss_pred             CCCCCCCCCCCccccCccCcEEEccCCccccchhhccCcccH
Q psy5270          80 YNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL  121 (352)
Q Consensus        80 ~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L  121 (352)
                      +|++++..+|..|+++++|++|++++|+++.  ..++++++|
T Consensus        99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L  138 (520)
T 2z7x_B           99 FNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHL  138 (520)
T ss_dssp             SSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTS
T ss_pred             CCccccccchhhhccCCcceEEEecCcccch--hhccccccc
Confidence            8877764567777777888888887777764  234444444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.92  E-value=1.5e-25  Score=214.12  Aligned_cols=242  Identities=23%  Similarity=0.311  Sum_probs=162.4

Q ss_pred             ccEEEeeCCcCcccCccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCccc-cccCCCCCCCEEEccCC
Q psy5270           4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLP-RGFGAFPVLEVLDLTYN   81 (352)
Q Consensus         4 L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip-~~~~~l~~L~~L~Ls~N   81 (352)
                      ...++.+++.++++|.++.  +++++|+|++|+++.+ |..|.++++|+.|+|++|+++.++ ..|+++++|+.|+|++|
T Consensus        56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  133 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN  133 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence            3567777777777777665  4777888888877754 557777778888888888777554 45777778888888888


Q ss_pred             CCCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCcccccc
Q psy5270          82 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA  160 (352)
Q Consensus        82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~  160 (352)
                      ++++ ..+..|.++++|++|++++|+++.+|. .+.++++|+.|+++...     .-..+    ....+..++.+...  
T Consensus       134 ~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~-----~l~~i----~~~~~~~l~~L~~L--  201 (452)
T 3zyi_A          134 WLTV-IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK-----KLEYI----SEGAFEGLFNLKYL--  201 (452)
T ss_dssp             CCSB-CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT-----TCCEE----CTTTTTTCTTCCEE--
T ss_pred             cCCc-cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCC-----Ccccc----ChhhccCCCCCCEE--
Confidence            7775 334457777778888888887776655 56677777666554311     00011    01122233333322  


Q ss_pred             chhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCc-ccCCCCCcccchhhhhhhhhhccccc
Q psy5270         161 SKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSL-PRGFGAFPVLEAFSFTTILDLTYNNL  239 (352)
Q Consensus       161 s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~i-p~~~~~l~~L~~~~~L~~L~ls~N~l  239 (352)
                                          ++++|++++. |.......++.+++++|+++.+ |..+..++.|      +.|++++|++
T Consensus       202 --------------------~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------~~L~L~~n~l  254 (452)
T 3zyi_A          202 --------------------NLGMCNIKDM-PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL------KKLWVMNSQV  254 (452)
T ss_dssp             --------------------ECTTSCCSSC-CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTC------CEEECTTSCC
T ss_pred             --------------------ECCCCccccc-ccccccccccEEECcCCcCcccCcccccCccCC------CEEEeCCCcC
Confidence                                2334445443 4444556777888888888855 6667777776      6888899988


Q ss_pred             cccCCCchhhhhHHhHhhhCCCCcceecchh-hhcccccccccCCceee
Q psy5270         240 NEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQIMLEPRWVI  287 (352)
Q Consensus       240 ~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP~~-l~~l~~L~~l~~~~~~~  287 (352)
                      ++ ..|..|..+++|+.|+|++|+++.+|.. +..+++|+.+....++.
T Consensus       255 ~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          255 SL-IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             CE-ECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             ce-ECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence            87 5678888888899999999988866554 67888888875555544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.92  E-value=2.1e-26  Score=212.98  Aligned_cols=248  Identities=21%  Similarity=0.251  Sum_probs=149.0

Q ss_pred             CccEEEeeCCcCcccCc-cccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEcc
Q psy5270           3 YITRITLSHNKLKEIPP-GLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLT   79 (352)
Q Consensus         3 ~L~~L~Ls~N~l~~ip~-~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~Ls   79 (352)
                      +|++|++++|+++.+|+ .++++++|++|++++|+++.+ |..++++++|++|++++|+++.+|.. ++++++|++|+++
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  132 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL  132 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence            56777777777776655 577777777777777777754 44677777777777777777777665 6777777777777


Q ss_pred             CCCCCCCCCCC--ccccCccCcEEEccCCc-cccc-hhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCc
Q psy5270          80 YNNLNEQSLPG--NFFMLETLRALYLGDND-FEVL-PAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNL  155 (352)
Q Consensus        80 ~N~l~g~~~p~--~~~~l~~L~~L~l~~N~-l~~i-p~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l  155 (352)
                      +|++++  +|.  .+.++++|++|++++|+ ++.+ |..++++++|+.++++..     ...    .+ ....+..++.+
T Consensus       133 ~n~l~~--l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-----~l~----~~-~~~~l~~l~~L  200 (353)
T 2z80_A          133 GNPYKT--LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-----DLQ----SY-EPKSLKSIQNV  200 (353)
T ss_dssp             TCCCSS--SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-----TCC----EE-CTTTTTTCSEE
T ss_pred             CCCCcc--cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC-----CcC----cc-CHHHHhccccC
Confidence            777764  454  66777777777777773 5554 346677777666655431     000    00 01122233333


Q ss_pred             cccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc-ccCCccCcccccccCCCcccC-CCCCcccchhhhhhhhh
Q psy5270         156 VPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV-DTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILD  233 (352)
Q Consensus       156 ~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~-~~~~l~~l~l~~n~l~~ip~~-~~~l~~L~~~~~L~~L~  233 (352)
                      .....+.+                      .+....+... ....++.+++++|+++.++.. +..   ......++.++
T Consensus       201 ~~L~l~~n----------------------~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~---~~~~~~l~~l~  255 (353)
T 2z80_A          201 SHLILHMK----------------------QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST---GETNSLIKKFT  255 (353)
T ss_dssp             EEEEEECS----------------------CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------CCCCCCEEE
T ss_pred             CeecCCCC----------------------ccccchhhhhhhcccccEEECCCCcccccccccccc---ccccchhhccc
Confidence            33333222                      2221111111 234566777777877754421 111   11111223445


Q ss_pred             hcccccccc---CCCchhhhhHHhHhhhCCCCcceecchhh-hcccccccccCCceee
Q psy5270         234 LTYNNLNEQ---SLPGNFFMLETLRALYLGDNDFEVLPAEI-GNLKNLQIMLEPRWVI  287 (352)
Q Consensus       234 ls~N~l~g~---~iP~~~~~l~~L~~L~Ls~N~l~~iP~~l-~~l~~L~~l~~~~~~~  287 (352)
                      +++|.+++.   .+|+.+..+++|++||+++|+++.+|.++ +++++|+.+....++.
T Consensus       256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~  313 (353)
T 2z80_A          256 FRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW  313 (353)
T ss_dssp             EESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             cccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCc
Confidence            555554431   36778888999999999999999888884 8889998886555554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.92  E-value=2e-26  Score=227.92  Aligned_cols=265  Identities=19%  Similarity=0.198  Sum_probs=171.9

Q ss_pred             CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCC-ccccccCCCCCCCEEEccC
Q psy5270           2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLS-SLPRGFGAFPVLEVLDLTY   80 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~Ls~   80 (352)
                      ++|+.|++++|.++.+| ++..+++|++|++++|.++.+| .+ .+++|+.|++++|+.. .+  .++.+++|+.|++++
T Consensus       285 ~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~  359 (606)
T 3vq2_A          285 ANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSR  359 (606)
T ss_dssp             TTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCS
T ss_pred             CCCCEEEecCccchhhh-hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcC
Confidence            57888888888888888 7888888888888888888777 44 7788888888887544 33  466777888888888


Q ss_pred             CCCCCCC-CCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccc
Q psy5270          81 NNLNEQS-LPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYC  159 (352)
Q Consensus        81 N~l~g~~-~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~  159 (352)
                      |++++.. +|..++.+++|++|++++|.++.+|..++++++|+.++++.         ..+........+..++.+....
T Consensus       360 n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~---------n~l~~~~~~~~~~~l~~L~~L~  430 (606)
T 3vq2_A          360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQH---------STLKRVTEFSAFLSLEKLLYLD  430 (606)
T ss_dssp             SCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTT---------SEEESTTTTTTTTTCTTCCEEE
T ss_pred             CccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCC---------CccCCccChhhhhccccCCEEE
Confidence            8777511 36777777788888888888777777777777777766554         1222221112333344444333


Q ss_pred             cchhhhhhhhHHhHHHH--HHHHhcCCceeec-ccCccc-ccCCccCcccccccCCCc-ccCCCCCcccchhhhhhhhhh
Q psy5270         160 ASKFAVRGLMEALAEEL--REDARNSKIKFTS-IFPFMV-DTGLCKNPKIKMNRLSSL-PRGFGAFPVLEAFSFTTILDL  234 (352)
Q Consensus       160 ~s~~~l~~~~~~l~~~l--~~~~~~~~n~~~g-~~P~~~-~~~~l~~l~l~~n~l~~i-p~~~~~l~~L~~~~~L~~L~l  234 (352)
                      .+.+.+.+........+  ...+++++|.+++ ..|..+ ....++.+++++|+++.+ |..++.++.|      +.|++
T Consensus       431 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------~~L~L  504 (606)
T 3vq2_A          431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL------QLLNM  504 (606)
T ss_dssp             CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC------CEEEC
T ss_pred             CcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC------CEEEC
Confidence            33333222111100000  0123455666666 344433 456677777777777743 5556666666      57888


Q ss_pred             ccccccccCCCchhhhhHHhHhhhCCCCcceecchhhhccc-ccccccCCceee
Q psy5270         235 TYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLK-NLQIMLEPRWVI  287 (352)
Q Consensus       235 s~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP~~l~~l~-~L~~l~~~~~~~  287 (352)
                      ++|++++ .+|..++.+++|++|||++|+++.+|.++..+. +|+.+....++.
T Consensus       505 s~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~  557 (606)
T 3vq2_A          505 SHNNLLF-LDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV  557 (606)
T ss_dssp             CSSCCSC-EEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred             CCCcCCC-cCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCc
Confidence            8888876 567778888888888888888887777777775 477776555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=2.9e-26  Score=208.52  Aligned_cols=218  Identities=20%  Similarity=0.220  Sum_probs=146.2

Q ss_pred             ccEEEeeCCcCc--ccCcccc-------CCCCCCEEEccCCcCc-cccccc--CCCCCCcEEEccCCCCCccccccCCC-
Q psy5270           4 ITRITLSHNKLK--EIPPGLA-------NLVNLEILTLFNNQIE-TLPTSL--SSLPKLRILNLGMNRLSSLPRGFGAF-   70 (352)
Q Consensus         4 L~~L~Ls~N~l~--~ip~~l~-------~l~~L~~L~L~~N~l~-~ip~~l--~~L~~L~~L~L~~N~l~~ip~~~~~l-   70 (352)
                      |+.|++++|.++  .+|+.+.       ++++|++|+|++|+++ .+|..+  +.+++|++|++++|+++.+|..++.+ 
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~  144 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ  144 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence            667888888885  6777766       7888999999999988 678776  88889999999999998778777766 


Q ss_pred             ----CCCCEEEccCCCCCCCCCCCccccCccCcEEEccCCcccc---chhhc--cCcccHHHHHHhcchhhHhhcCceEe
Q psy5270          71 ----PVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEV---LPAEI--GNLKNLQIILETFLPDMMEKNRGHIV  141 (352)
Q Consensus        71 ----~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~---ip~~~--~nl~~L~~L~l~~~p~~~~~~~g~i~  141 (352)
                          ++|++|++++|++++ ..|..|+++++|++|++++|++.+   +|..+  +++++|+.|+++..            
T Consensus       145 ~~~~~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N------------  211 (312)
T 1wwl_A          145 QWLKPGLKVLSIAQAHSLN-FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA------------  211 (312)
T ss_dssp             TTCCTTCCEEEEESCSCCC-CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS------------
T ss_pred             HhhcCCCcEEEeeCCCCcc-chHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC------------
Confidence                889999999999887 556888888999999999998762   45555  67777766554430            


Q ss_pred             eccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcc--cCCCC
Q psy5270         142 GISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLP--RGFGA  219 (352)
Q Consensus       142 ~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip--~~~~~  219 (352)
                                            .+.+.. .....+                 ......++.+++++|+++..+  ..+..
T Consensus       212 ----------------------~l~~~~-~~~~~~-----------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  251 (312)
T 1wwl_A          212 ----------------------GMETPS-GVCSAL-----------------AAARVQLQGLDLSHNSLRDAAGAPSCDW  251 (312)
T ss_dssp             ----------------------CCCCHH-HHHHHH-----------------HHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred             ----------------------cCcchH-HHHHHH-----------------HhcCCCCCEEECCCCcCCcccchhhhhh
Confidence                                  000000 000000                 002234566666777766433  22333


Q ss_pred             CcccchhhhhhhhhhccccccccCCCchhhhhHHhHhhhCCCCcceecchhhhcccccccccCCce
Q psy5270         220 FPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIMLEPRW  285 (352)
Q Consensus       220 l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP~~l~~l~~L~~l~~~~~  285 (352)
                      ++.|      +.|++++|+++  .+|..+.  ++|++|||++|+++.+|. ++.+++|+.+....+
T Consensus       252 l~~L------~~L~Ls~N~l~--~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          252 PSQL------NSLNLSFTGLK--QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGN  306 (312)
T ss_dssp             CTTC------CEEECTTSCCS--SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTC
T ss_pred             cCCC------CEEECCCCccC--hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCC
Confidence            4444      56777777776  4666665  667777777777775565 666777766644333

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.92  E-value=5.9e-26  Score=224.98  Aligned_cols=121  Identities=27%  Similarity=0.328  Sum_probs=72.6

Q ss_pred             CccEEEeeCCcCcccCc-cccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEcc
Q psy5270           3 YITRITLSHNKLKEIPP-GLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDLT   79 (352)
Q Consensus         3 ~L~~L~Ls~N~l~~ip~-~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls   79 (352)
                      ++++|||++|+|++||+ +|.++++|++|+|++|+++.+|+ +|.+|++|++|+|++|+++.+|+ .|+++++|++|+++
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  132 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence            45666666666666553 46666666666666666665543 56666666666666666666554 35666666666666


Q ss_pred             CCCCCCCCCCCccccCccCcEEEccCCccc--cchhhccCcccHHHH
Q psy5270          80 YNNLNEQSLPGNFFMLETLRALYLGDNDFE--VLPAEIGNLKNLQII  124 (352)
Q Consensus        80 ~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~--~ip~~~~nl~~L~~L  124 (352)
                      +|++++ ..+..|+++++|++|++++|+++  .+|..++++++|+++
T Consensus       133 ~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L  178 (635)
T 4g8a_A          133 ETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL  178 (635)
T ss_dssp             TSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred             CCcCCC-CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhh
Confidence            666654 22334666666666666666665  344555544444443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=1.2e-24  Score=195.70  Aligned_cols=196  Identities=28%  Similarity=0.370  Sum_probs=158.9

Q ss_pred             CCCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEcc
Q psy5270           1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLT   79 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls   79 (352)
                      +++++.+++++|.++.+|+.+.  +++++|+|++|+++.+ |..+..+++|++|++++|+++.+|.. +.+++|+.|+++
T Consensus         9 l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls   85 (290)
T 1p9a_G            9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLS   85 (290)
T ss_dssp             STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECC
T ss_pred             cCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECC
Confidence            4688999999999999999886  5899999999999965 67899999999999999999988875 899999999999


Q ss_pred             CCCCCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCcccc
Q psy5270          80 YNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPY  158 (352)
Q Consensus        80 ~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~  158 (352)
                      +|+++  .+|..+..+++|++|++++|+++.+|+ .|+++++|+.|+++                               
T Consensus        86 ~N~l~--~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~-------------------------------  132 (290)
T 1p9a_G           86 HNQLQ--SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK-------------------------------  132 (290)
T ss_dssp             SSCCS--SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECT-------------------------------
T ss_pred             CCcCC--cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECC-------------------------------
Confidence            99998  489999999999999999999998764 67777776654333                               


Q ss_pred             ccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc-ccCCccCcccccccCCCcccCC-CCCcccchhhhhhhhhhcc
Q psy5270         159 CASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV-DTGLCKNPKIKMNRLSSLPRGF-GAFPVLEAFSFTTILDLTY  236 (352)
Q Consensus       159 ~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~-~~~~l~~l~l~~n~l~~ip~~~-~~l~~L~~~~~L~~L~ls~  236 (352)
                                               +|++++..+..+ ....++.+++++|+++.+|... ..++.|      +.|++++
T Consensus       133 -------------------------~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L------~~L~L~~  181 (290)
T 1p9a_G          133 -------------------------GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL------DTLLLQE  181 (290)
T ss_dssp             -------------------------TSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTC------CEEECCS
T ss_pred             -------------------------CCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCC------CEEECCC
Confidence                                     233333333322 3456677788888888877653 556666      6888888


Q ss_pred             ccccccCCCchhhhhHHhHhhhCCCCcce
Q psy5270         237 NNLNEQSLPGNFFMLETLRALYLGDNDFE  265 (352)
Q Consensus       237 N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~  265 (352)
                      |+++  .+|..+..+.+|+.++|++|.+.
T Consensus       182 N~l~--~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          182 NSLY--TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             SCCC--CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CcCC--ccChhhcccccCCeEEeCCCCcc
Confidence            8887  47888888888888888888886

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.92  E-value=5.4e-26  Score=222.12  Aligned_cols=125  Identities=18%  Similarity=0.244  Sum_probs=107.1

Q ss_pred             CCCccEEEeeCCcCcccC-ccccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCC--ccccccCCCCCCCEE
Q psy5270           1 MLYITRITLSHNKLKEIP-PGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLS--SLPRGFGAFPVLEVL   76 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~~ip-~~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~--~ip~~~~~l~~L~~L   76 (352)
                      +++|++|++++|+++.+| +.|+++++|++|+|++|+++.+|+ .++++++|++|++++|+++  .+|..++++++|+.|
T Consensus        49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L  128 (549)
T 2z81_A           49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL  128 (549)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred             CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE
Confidence            578999999999999655 679999999999999999997755 5999999999999999998  457789999999999


Q ss_pred             EccCCCCCCCCCC-CccccCccCcEEEccCCccc-cchhhccCcccHHHHHH
Q psy5270          77 DLTYNNLNEQSLP-GNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQIILE  126 (352)
Q Consensus        77 ~Ls~N~l~g~~~p-~~~~~l~~L~~L~l~~N~l~-~ip~~~~nl~~L~~L~l  126 (352)
                      ++++|++.+ .+| ..|+++++|++|++++|+++ .+|..++++++|+.+++
T Consensus       129 ~L~~n~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  179 (549)
T 2z81_A          129 RIGNVETFS-EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL  179 (549)
T ss_dssp             EEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred             ECCCCcccc-ccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEec
Confidence            999999655 465 58999999999999999998 57778887776665543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=3.1e-26  Score=226.34  Aligned_cols=274  Identities=19%  Similarity=0.190  Sum_probs=195.8

Q ss_pred             CCccEEEeeCCcCcccCcc-ccCCCCCCEEEccCCcCcccc-cccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEc
Q psy5270           2 LYITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDL   78 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~ip-~~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~L   78 (352)
                      ++++.+++++|.++.+|+. ++++++|++|+|++|.++.+| ..|+.+++|++|+|++|.++.+|+ .|+++++|+.|+|
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence            5789999999999999876 678999999999999999665 599999999999999999997765 4799999999999


Q ss_pred             cCCCCCCCCCCC-ccccCccCcEEEccCCccccch-hhccCcccHHHHHHhcchhh----HhhcCceEeecc--cccccc
Q psy5270          79 TYNNLNEQSLPG-NFFMLETLRALYLGDNDFEVLP-AEIGNLKNLQIILETFLPDM----MEKNRGHIVGIS--SMAGIV  150 (352)
Q Consensus        79 s~N~l~g~~~p~-~~~~l~~L~~L~l~~N~l~~ip-~~~~nl~~L~~L~l~~~p~~----~~~~~g~i~~is--s~~~l~  150 (352)
                      ++|.+++  +|. .|+++++|++|++++|.++.++ ..|+++++|+.|+++...-.    ..........++  ...++.
T Consensus       131 ~~n~l~~--l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~  208 (597)
T 3oja_B          131 ERNDLSS--LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA  208 (597)
T ss_dssp             CSSCCCC--CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred             eCCCCCC--CCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc
Confidence            9999986  555 4689999999999999999654 57999999998887752100    000000001110  011111


Q ss_pred             CCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCC-cccCCCCCcccchhhhh
Q psy5270         151 GLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSS-LPRGFGAFPVLEAFSFT  229 (352)
Q Consensus       151 ~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~-ip~~~~~l~~L~~~~~L  229 (352)
                      ..+.+.....+.+.+..+....... ...+.+++|.+++. +.....+.++.+++++|.++. +|..++.++.|      
T Consensus       209 ~~~~L~~L~ls~n~l~~~~~~~~~~-L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------  280 (597)
T 3oja_B          209 IPIAVEELDASHNSINVVRGPVNVE-LTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL------  280 (597)
T ss_dssp             CCTTCSEEECCSSCCCEEECSCCSC-CCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC------
T ss_pred             CCchhheeeccCCcccccccccCCC-CCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCC------
Confidence            1222222222322222111110000 01234556666653 334456677888889998884 46778877777      


Q ss_pred             hhhhhccccccccCCCchhhhhHHhHhhhCCCCcceecchhhhcccccccccCCceee
Q psy5270         230 TILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIMLEPRWVI  287 (352)
Q Consensus       230 ~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP~~l~~l~~L~~l~~~~~~~  287 (352)
                      +.|+|++|.+++  +|..++.+++|++|+|++|.++.+|..++.+++|+.|....+.+
T Consensus       281 ~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l  336 (597)
T 3oja_B          281 ERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI  336 (597)
T ss_dssp             CEEECTTSCCCE--EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred             CEEECCCCCCCC--CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCC
Confidence            689999999985  68888889999999999999999999999999999885554433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.92  E-value=6.7e-26  Score=222.36  Aligned_cols=107  Identities=26%  Similarity=0.364  Sum_probs=87.4

Q ss_pred             CCccEEEeeCCcCcccC-ccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEcc
Q psy5270           2 LYITRITLSHNKLKEIP-PGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLT   79 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip-~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls   79 (352)
                      ++|++||+++|+++.+| ..|+++++|++|+|++|+++.+ |..|+++++|++|++++|+++.+|..  .+++|+.|+++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls  129 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLS  129 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECC
Confidence            46788888888888666 4788888888888888888865 66788888888888888888888876  78888888888


Q ss_pred             CCCCCCCCCCCccccCccCcEEEccCCcccc
Q psy5270          80 YNNLNEQSLPGNFFMLETLRALYLGDNDFEV  110 (352)
Q Consensus        80 ~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~  110 (352)
                      +|++++..+|..|+++++|++|++++|+++.
T Consensus       130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             SSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred             CCCccccCchHhhcccCcccEEecCCCcccc
Confidence            8888764456788888888888888888763

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.92  E-value=6.4e-26  Score=220.28  Aligned_cols=102  Identities=20%  Similarity=0.323  Sum_probs=87.8

Q ss_pred             CCCccEEEeeCCcCccc-CccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCc--cccccCCCCCCCEEE
Q psy5270           1 MLYITRITLSHNKLKEI-PPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSS--LPRGFGAFPVLEVLD   77 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~~i-p~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~--ip~~~~~l~~L~~L~   77 (352)
                      +++|++|++++|+++.+ |..|+++++|++|+|++|+++.+|..  .+++|++|++++|+++.  +|..|+++++|+.|+
T Consensus        44 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~  121 (520)
T 2z7x_B           44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLG  121 (520)
T ss_dssp             CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEE
T ss_pred             cccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEE
Confidence            57899999999999955 77899999999999999999999887  89999999999999985  678999999999999


Q ss_pred             ccCCCCCCCCCCCccccCccC--cEEEccCCcc
Q psy5270          78 LTYNNLNEQSLPGNFFMLETL--RALYLGDNDF  108 (352)
Q Consensus        78 Ls~N~l~g~~~p~~~~~l~~L--~~L~l~~N~l  108 (352)
                      +++|++++    ..++.+++|  ++|++++|++
T Consensus       122 L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B          122 LSTTHLEK----SSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             EEESSCCG----GGGGGGTTSCEEEEEEEECTT
T ss_pred             ecCcccch----hhccccccceeeEEEeecccc
Confidence            99999875    245556666  7777777666

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.92  E-value=2.1e-25  Score=223.56  Aligned_cols=269  Identities=23%  Similarity=0.261  Sum_probs=162.1

Q ss_pred             CCccEEEeeCCcCcccCc-cccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEc
Q psy5270           2 LYITRITLSHNKLKEIPP-GLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDL   78 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~-~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~L   78 (352)
                      +++++||+++|.++.+|+ .|+++++|++|+|++|.++.+ |..++++++|++|++++|+++.+|+ .|+++++|++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            468889999998887765 588888899999999888854 6678888889999999998888887 4888888999999


Q ss_pred             cCCCCCCCCCCCccccCccCcEEEccCCcccc-chhhccCcccHHHHHHhcc------hhhHhh---cCceEeecccc--
Q psy5270          79 TYNNLNEQSLPGNFFMLETLRALYLGDNDFEV-LPAEIGNLKNLQIILETFL------PDMMEK---NRGHIVGISSM--  146 (352)
Q Consensus        79 s~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~-ip~~~~nl~~L~~L~l~~~------p~~~~~---~~g~i~~iss~--  146 (352)
                      ++|++++ ..|..|+++++|++|++++|+++. .|..++++++|++++++..      +.....   ......+++.+  
T Consensus       105 ~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l  183 (680)
T 1ziw_A          105 MSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI  183 (680)
T ss_dssp             CSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred             CCCccCc-cChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence            9988876 445678888889999999988884 4557788888887776542      111110   01111222111  


Q ss_pred             -----ccccCCCCccccccchhhhhhhhHHhHHHHH--------HHHhcCCceeecccCcccc-c--CCccCcccccccC
Q psy5270         147 -----AGIVGLPNLVPYCASKFAVRGLMEALAEELR--------EDARNSKIKFTSIFPFMVD-T--GLCKNPKIKMNRL  210 (352)
Q Consensus       147 -----~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~--------~~~~~~~n~~~g~~P~~~~-~--~~l~~l~l~~n~l  210 (352)
                           ..+..++.+.......+.+.   ......+.        ..+.++++.+.+..|..+. .  ..++.+++++|++
T Consensus       184 ~~~~~~~~~~l~~L~~L~l~~~~l~---~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l  260 (680)
T 1ziw_A          184 KEFSPGCFHAIGRLFGLFLNNVQLG---PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL  260 (680)
T ss_dssp             CCBCTTGGGGSSEECEEECTTCCCH---HHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred             cccChhhhhhhhhhhhhhccccccC---hhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence                 00111111111111111111   11111111        1223445555555554332 1  2256666666666


Q ss_pred             CCc-ccCCCCCcccchhhhhhhhhhccccccccCCCchhhhhHHhHhhhCCCCcce------ecch----hhhccccccc
Q psy5270         211 SSL-PRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE------VLPA----EIGNLKNLQI  279 (352)
Q Consensus       211 ~~i-p~~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~------~iP~----~l~~l~~L~~  279 (352)
                      +.+ |..++.++.|      +.|++++|++++ ..|..|+.+++|++|++++|...      .+|.    .++++++|+.
T Consensus       261 ~~~~~~~~~~l~~L------~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~  333 (680)
T 1ziw_A          261 NVVGNDSFAWLPQL------EYFFLEYNNIQH-LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH  333 (680)
T ss_dssp             CEECTTTTTTCTTC------CEEECCSCCBSE-ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCE
T ss_pred             CccCcccccCcccc------cEeeCCCCccCc-cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCE
Confidence            643 3445555555      466666666665 45666666666666666665433      2332    4566666666


Q ss_pred             cc
Q psy5270         280 ML  281 (352)
Q Consensus       280 l~  281 (352)
                      +.
T Consensus       334 L~  335 (680)
T 1ziw_A          334 LN  335 (680)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.92  E-value=2.3e-25  Score=214.11  Aligned_cols=260  Identities=22%  Similarity=0.271  Sum_probs=174.9

Q ss_pred             cEEEeeCCcCcccCccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCcc-ccccCCCCCCCEEEccCCC
Q psy5270           5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSL-PRGFGAFPVLEVLDLTYNN   82 (352)
Q Consensus         5 ~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~Ls~N~   82 (352)
                      +.++.++++++.+|.++.  +++++|+|++|+++.+ |..|.++++|++|+|++|+++.+ |..|+++++|+.|+|++|+
T Consensus        14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             TEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence            578999999999999875  5899999999999966 56899999999999999999966 7789999999999999999


Q ss_pred             CCCCCCCCccccCccCcEEEccCCccccc-hhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccc
Q psy5270          83 LNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCAS  161 (352)
Q Consensus        83 l~g~~~p~~~~~l~~L~~L~l~~N~l~~i-p~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s  161 (352)
                      +++ ..+..|+++++|++|++++|+++.+ |..+.++++|+.|+++...         +..+ ....+..++.+.....+
T Consensus        92 l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~---------l~~~-~~~~~~~l~~L~~L~l~  160 (477)
T 2id5_A           92 LKL-IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND---------LVYI-SHRAFSGLNSLEQLTLE  160 (477)
T ss_dssp             CCS-CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT---------CCEE-CTTSSTTCTTCCEEEEE
T ss_pred             CCc-cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc---------ccee-ChhhccCCCCCCEEECC
Confidence            986 3344689999999999999999954 6689999999888776511         1111 11223344455444444


Q ss_pred             hhhhhhhhHHhHHHHH--HHHhcCCceeecccCccc-ccC------------------------CccCcccccccCCCcc
Q psy5270         162 KFAVRGLMEALAEELR--EDARNSKIKFTSIFPFMV-DTG------------------------LCKNPKIKMNRLSSLP  214 (352)
Q Consensus       162 ~~~l~~~~~~l~~~l~--~~~~~~~n~~~g~~P~~~-~~~------------------------~l~~l~l~~n~l~~ip  214 (352)
                      .+.+..........+.  ..+++++|.+.+..+..+ ...                        .++.+++++|+++.+|
T Consensus       161 ~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  240 (477)
T 2id5_A          161 KCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP  240 (477)
T ss_dssp             SCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCC
T ss_pred             CCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccC
Confidence            4444332221111110  122334444444433211 222                        3444455555555555


Q ss_pred             c-CCCCCcccchhhhhhhhhhccccccccCCCchhhhhHHhHhhhCCCCcce-ecchhhhcccccccccCCc
Q psy5270         215 R-GFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQIMLEPR  284 (352)
Q Consensus       215 ~-~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~-~iP~~l~~l~~L~~l~~~~  284 (352)
                      . .+..++.|      +.|+|++|.+++ ..+..|..+++|+.|+|++|+++ ..|..++++++|+.|+...
T Consensus       241 ~~~~~~l~~L------~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  305 (477)
T 2id5_A          241 YLAVRHLVYL------RFLNLSYNPIST-IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG  305 (477)
T ss_dssp             HHHHTTCTTC------CEEECCSSCCCE-ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCS
T ss_pred             HHHhcCcccc------CeeECCCCcCCc-cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCC
Confidence            2 34444444      677777777776 45566777777777777777777 4466677777777764433

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.91  E-value=1.2e-25  Score=203.78  Aligned_cols=201  Identities=22%  Similarity=0.301  Sum_probs=169.8

Q ss_pred             CCCccEEEeeCCcCccc---CccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCcccc--ccCCCCCCCE
Q psy5270           1 MLYITRITLSHNKLKEI---PPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPR--GFGAFPVLEV   75 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~~i---p~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~--~~~~l~~L~~   75 (352)
                      +++|++|++++|+++.+   |..+..+++|++|++++|.++.+|..+..+++|++|++++|+++.++.  .+..+++|+.
T Consensus        51 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  130 (306)
T 2z66_A           51 LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY  130 (306)
T ss_dssp             CTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCE
T ss_pred             cccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCE
Confidence            47899999999999854   677888999999999999999999999999999999999999998765  7999999999


Q ss_pred             EEccCCCCCCCCCCCccccCccCcEEEccCCcccc--chhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCC
Q psy5270          76 LDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEV--LPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLP  153 (352)
Q Consensus        76 L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~--ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp  153 (352)
                      |++++|.+++ ..|..+..+++|++|++++|+++.  +|..++++++|+.++++                          
T Consensus       131 L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls--------------------------  183 (306)
T 2z66_A          131 LDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS--------------------------  183 (306)
T ss_dssp             EECTTSCCEE-CSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT--------------------------
T ss_pred             EECCCCcCCc-cchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECC--------------------------
Confidence            9999999987 678889999999999999999984  78888888777665443                          


Q ss_pred             CccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc-ccCCccCcccccccCCCccc-CCCCCcccchhhhhhh
Q psy5270         154 NLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV-DTGLCKNPKIKMNRLSSLPR-GFGAFPVLEAFSFTTI  231 (352)
Q Consensus       154 ~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~-~~~~l~~l~l~~n~l~~ip~-~~~~l~~L~~~~~L~~  231 (352)
                                                    +|++++..|..+ ....++.+++++|+++.+|. .+..++.|      +.
T Consensus       184 ------------------------------~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L------~~  227 (306)
T 2z66_A          184 ------------------------------QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL------QV  227 (306)
T ss_dssp             ------------------------------TSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTC------CE
T ss_pred             ------------------------------CCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccC------CE
Confidence                                          333444434322 34567888999999997765 56666666      79


Q ss_pred             hhhccccccccCCCchhhhh-HHhHhhhCCCCcce
Q psy5270         232 LDLTYNNLNEQSLPGNFFML-ETLRALYLGDNDFE  265 (352)
Q Consensus       232 L~ls~N~l~g~~iP~~~~~l-~~L~~L~Ls~N~l~  265 (352)
                      ||+++|++++ ..|..+..+ ++|++|+|++|.++
T Consensus       228 L~L~~N~l~~-~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          228 LDYSLNHIMT-SKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             EECTTSCCCB-CSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             eECCCCCCcc-cCHHHHHhhhccCCEEEccCCCee
Confidence            9999999998 788899988 58999999999998

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.91  E-value=1.5e-25  Score=229.86  Aligned_cols=272  Identities=21%  Similarity=0.233  Sum_probs=176.0

Q ss_pred             CCccEEEeeCCcCcc-cCccccCCCCCCEEEccCCcCc-cc-ccccCCCCCCcEEEccCCCCCcc-ccccCCCCCCCEEE
Q psy5270           2 LYITRITLSHNKLKE-IPPGLANLVNLEILTLFNNQIE-TL-PTSLSSLPKLRILNLGMNRLSSL-PRGFGAFPVLEVLD   77 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~-ip~~l~~l~~L~~L~L~~N~l~-~i-p~~l~~L~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~   77 (352)
                      ++|++|||++|.++. .|.+|+++++|++|+|++|.+. .+ |..|+++++|++|+|++|+++.+ |..|+++++|+.|+
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  103 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR  103 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence            578999999999995 4678999999999999999665 77 67899999999999999999955 77899999999999


Q ss_pred             ccCCCCCCCCCCCc--cccCccCcEEEccCCccccc--hhhccCcccHHHHHHhcch------hhHhh---cCceEeecc
Q psy5270          78 LTYNNLNEQSLPGN--FFMLETLRALYLGDNDFEVL--PAEIGNLKNLQIILETFLP------DMMEK---NRGHIVGIS  144 (352)
Q Consensus        78 Ls~N~l~g~~~p~~--~~~l~~L~~L~l~~N~l~~i--p~~~~nl~~L~~L~l~~~p------~~~~~---~~g~i~~is  144 (352)
                      |++|.+++ .+|..  |+++++|++|++++|+++.+  ++.|+++++|+.|+++...      ..+..   .......++
T Consensus       104 Ls~n~l~~-~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~  182 (844)
T 3j0a_A          104 LYFCGLSD-AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA  182 (844)
T ss_dssp             CTTCCCSS-CCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred             CcCCCCCc-ccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence            99999987 56665  88999999999999999844  4578999999888776521      11110   111111111


Q ss_pred             cccc-------ccCCC------CccccccchhhhhhhhH-HhH-----------------------------------H-
Q psy5270         145 SMAG-------IVGLP------NLVPYCASKFAVRGLME-ALA-----------------------------------E-  174 (352)
Q Consensus       145 s~~~-------l~~lp------~l~~~~~s~~~l~~~~~-~l~-----------------------------------~-  174 (352)
                      .+.-       +...+      .+.....+.+.+.+... .+.                                   . 
T Consensus       183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~  262 (844)
T 3j0a_A          183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG  262 (844)
T ss_dssp             CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred             CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence            1000       00000      01111111111110000 000                                   0 


Q ss_pred             ---HHHHHHhcCCceeecccCccc-ccCCccCcccccccCCCc-ccCCCCCcccchhhhhhhhhhccccccccCCCchhh
Q psy5270         175 ---ELREDARNSKIKFTSIFPFMV-DTGLCKNPKIKMNRLSSL-PRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFF  249 (352)
Q Consensus       175 ---~l~~~~~~~~n~~~g~~P~~~-~~~~l~~l~l~~n~l~~i-p~~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~  249 (352)
                         .-...+++++|.+.+..|..+ ....++.+++++|+++.+ |..++.++.|      +.|++++|.+++ ..|..|.
T Consensus       263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L------~~L~Ls~N~l~~-~~~~~~~  335 (844)
T 3j0a_A          263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNL------QVLNLSYNLLGE-LYSSNFY  335 (844)
T ss_dssp             TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSC------CEEEEESCCCSC-CCSCSCS
T ss_pred             cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCC------CEEECCCCCCCc-cCHHHhc
Confidence               000122344555555544433 345566667777777644 4456666655      678888888876 5677788


Q ss_pred             hhHHhHhhhCCCCcceecc-hhhhccccccccc
Q psy5270         250 MLETLRALYLGDNDFEVLP-AEIGNLKNLQIML  281 (352)
Q Consensus       250 ~l~~L~~L~Ls~N~l~~iP-~~l~~l~~L~~l~  281 (352)
                      .+++|++|++++|+++.+| ..++++++|+.|.
T Consensus       336 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  368 (844)
T 3j0a_A          336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLD  368 (844)
T ss_dssp             SCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEE
T ss_pred             CCCCCCEEECCCCCCCccChhhhcCCCCCCEEE
Confidence            8888888888888887544 4477777777763

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.91  E-value=6.7e-25  Score=196.83  Aligned_cols=200  Identities=29%  Similarity=0.364  Sum_probs=161.3

Q ss_pred             CCccEEEeeCCcCcccC-ccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCC-CCcc-ccccCCCCCCCEEE
Q psy5270           2 LYITRITLSHNKLKEIP-PGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNR-LSSL-PRGFGAFPVLEVLD   77 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip-~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~-l~~i-p~~~~~l~~L~~L~   77 (352)
                      ++|++|++++|.++.+| ..|+++++|++|++++|.++.+ |..+..+++|++|++++|. ++.+ |..++.+++|+.|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            57899999999999776 4699999999999999999966 7799999999999999997 8877 66799999999999


Q ss_pred             ccCCCCCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCcc
Q psy5270          78 LTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLV  156 (352)
Q Consensus        78 Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~  156 (352)
                      +++|++++ ..|..|.++++|++|++++|+++.+|. .++++++|+.++++                             
T Consensus       112 l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-----------------------------  161 (285)
T 1ozn_A          112 LDRCGLQE-LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH-----------------------------  161 (285)
T ss_dssp             CTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-----------------------------
T ss_pred             CCCCcCCE-ECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECC-----------------------------
Confidence            99999997 568889999999999999999997765 47777766554332                             


Q ss_pred             ccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCc-ccccCCccCcccccccCCCc-ccCCCCCcccchhhhhhhhhh
Q psy5270         157 PYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPF-MVDTGLCKNPKIKMNRLSSL-PRGFGAFPVLEAFSFTTILDL  234 (352)
Q Consensus       157 ~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~-~~~~~~l~~l~l~~n~l~~i-p~~~~~l~~L~~~~~L~~L~l  234 (352)
                                                 +|++++..+. +.....++.+++++|+++.+ |..++.++.|      +.|++
T Consensus       162 ---------------------------~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------~~L~l  208 (285)
T 1ozn_A          162 ---------------------------GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL------MTLYL  208 (285)
T ss_dssp             ---------------------------SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC------CEEEC
T ss_pred             ---------------------------CCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccc------cEeeC
Confidence                                       2333333332 22355677788888888854 6777777776      68888


Q ss_pred             ccccccccCCCchhhhhHHhHhhhCCCCcce
Q psy5270         235 TYNNLNEQSLPGNFFMLETLRALYLGDNDFE  265 (352)
Q Consensus       235 s~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~  265 (352)
                      ++|++++ ..|..+..+++|++|++++|.+.
T Consensus       209 ~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          209 FANNLSA-LPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CSSCCSC-CCHHHHTTCTTCCEEECCSSCEE
T ss_pred             CCCcCCc-CCHHHcccCcccCEEeccCCCcc
Confidence            8888886 34456888888888888888887

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.91  E-value=1.8e-24  Score=198.32  Aligned_cols=255  Identities=18%  Similarity=0.215  Sum_probs=178.0

Q ss_pred             eeCCcCcccCccccCC------CCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccc-cccCCCCCCCEEEccCC
Q psy5270           9 LSHNKLKEIPPGLANL------VNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP-RGFGAFPVLEVLDLTYN   81 (352)
Q Consensus         9 Ls~N~l~~ip~~l~~l------~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip-~~~~~l~~L~~L~Ls~N   81 (352)
                      .+.+.++++|+.+...      .+++.+++++|.++.+|..+.  ++|+.|++++|+++.++ ..|+++++|++|++++|
T Consensus        11 ~~~~~l~~lp~~~~~~cp~~c~c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n   88 (332)
T 2ft3_A           11 SGIPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN   88 (332)
T ss_dssp             --------------CCCCSSCEEETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             cCCCccccCCCcccCCCCCCCcccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC
Confidence            3455666888776543      369999999999999998775  68999999999999775 47999999999999999


Q ss_pred             CCCCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccc
Q psy5270          82 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCAS  161 (352)
Q Consensus        82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s  161 (352)
                      ++++ ..|..|+++++|++|++++|+++.+|..+.  ++|+.++++..         .+..+. ...+..++.+....  
T Consensus        89 ~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n---------~i~~~~-~~~~~~l~~L~~L~--  153 (332)
T 2ft3_A           89 KISK-IHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDN---------RIRKVP-KGVFSGLRNMNCIE--  153 (332)
T ss_dssp             CCCE-ECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSS---------CCCCCC-SGGGSSCSSCCEEE--
T ss_pred             ccCc-cCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCC---------ccCccC-HhHhCCCccCCEEE--
Confidence            9997 568899999999999999999999998766  56666555431         111110 11233344443332  


Q ss_pred             hhhhhhhhHHhHHHHHHHHhcCCceee--cccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhccccc
Q psy5270         162 KFAVRGLMEALAEELREDARNSKIKFT--SIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNL  239 (352)
Q Consensus       162 ~~~l~~~~~~l~~~l~~~~~~~~n~~~--g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l  239 (352)
                                          +++|.++  +..|..+....++.++++.|+++.+|..+.  +.|      +.|++++|.+
T Consensus       154 --------------------l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~--~~L------~~L~l~~n~i  205 (332)
T 2ft3_A          154 --------------------MGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP--ETL------NELHLDHNKI  205 (332)
T ss_dssp             --------------------CCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSC--SSC------SCCBCCSSCC
T ss_pred             --------------------CCCCccccCCCCcccccCCccCEEECcCCCCCccCcccc--CCC------CEEECCCCcC
Confidence                                3345553  244444433377889999999999998764  455      7999999999


Q ss_pred             cccCCCchhhhhHHhHhhhCCCCcceec-chhhhcccccccccCCce-----eeeccccccCCcccccccccccCCC
Q psy5270         240 NEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIGNLKNLQIMLEPRW-----VISMGSCANGGGYYHYSYSVVRGCD  310 (352)
Q Consensus       240 ~g~~iP~~~~~l~~L~~L~Ls~N~l~~i-P~~l~~l~~L~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  310 (352)
                      ++ ..|..+..+++|++|+|++|+++.+ |..++.+++|+.+....+     |.....++... .++++.+.+.+.+
T Consensus       206 ~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~-~L~l~~N~l~~~~  280 (332)
T 2ft3_A          206 QA-IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQ-VVYLHTNNITKVG  280 (332)
T ss_dssp             CC-CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCC-EEECCSSCCCBCC
T ss_pred             Cc-cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCC-EEECCCCCCCccC
Confidence            97 5678899999999999999999955 457999999999854433     32333344332 5666677666553

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.91  E-value=2.2e-25  Score=213.76  Aligned_cols=80  Identities=31%  Similarity=0.457  Sum_probs=44.2

Q ss_pred             CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCC
Q psy5270           2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYN   81 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N   81 (352)
                      ++|++||+++|.++.+|+ ++++++|++|++++|+++.+++ ++++++|++|++++|+++.+|+ ++++++|+.|++++|
T Consensus        68 ~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n  144 (466)
T 1o6v_A           68 NNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSN  144 (466)
T ss_dssp             TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEE
T ss_pred             cCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCC
Confidence            455555555555555544 5555555555555555554444 5555555555555555555543 455555555555555


Q ss_pred             CCC
Q psy5270          82 NLN   84 (352)
Q Consensus        82 ~l~   84 (352)
                      .++
T Consensus       145 ~l~  147 (466)
T 1o6v_A          145 TIS  147 (466)
T ss_dssp             EEC
T ss_pred             ccC
Confidence            544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.91  E-value=5.8e-25  Score=209.32  Aligned_cols=242  Identities=23%  Similarity=0.342  Sum_probs=167.3

Q ss_pred             ccEEEeeCCcCcccCccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCccc-cccCCCCCCCEEEccCC
Q psy5270           4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLP-RGFGAFPVLEVLDLTYN   81 (352)
Q Consensus         4 L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip-~~~~~l~~L~~L~Ls~N   81 (352)
                      ...++.+++.++++|+++.  +++++|+|++|+++.+ +..|.++++|++|+|++|+++.++ ..|.++++|+.|+|++|
T Consensus        45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred             CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence            4567777777888887765  4778888888888755 457788888888888888888665 45777888888888888


Q ss_pred             CCCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCcccccc
Q psy5270          82 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA  160 (352)
Q Consensus        82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~  160 (352)
                      ++++ ..+..|..+++|++|++++|+++.+|. .|.++++|+.|+++...     .-..+.    ...+..++.+.... 
T Consensus       123 ~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~-----~l~~i~----~~~~~~l~~L~~L~-  191 (440)
T 3zyj_A          123 RLTT-IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK-----RLSYIS----EGAFEGLSNLRYLN-  191 (440)
T ss_dssp             CCSS-CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT-----TCCEEC----TTTTTTCSSCCEEE-
T ss_pred             cCCe-eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCC-----CcceeC----cchhhcccccCeec-
Confidence            8875 334467778888888888888886655 67777777766554311     000110    11223334333322 


Q ss_pred             chhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCc-ccCCCCCcccchhhhhhhhhhccccc
Q psy5270         161 SKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSL-PRGFGAFPVLEAFSFTTILDLTYNNL  239 (352)
Q Consensus       161 s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~i-p~~~~~l~~L~~~~~L~~L~ls~N~l  239 (352)
                                           +++|+++. +|.......++.+++++|+++.+ |..+..++.|      +.|++++|++
T Consensus       192 ---------------------L~~n~l~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------~~L~L~~n~l  243 (440)
T 3zyj_A          192 ---------------------LAMCNLRE-IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL------QKLWMIQSQI  243 (440)
T ss_dssp             ---------------------CTTSCCSS-CCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTC------CEEECTTCCC
T ss_pred             ---------------------CCCCcCcc-ccccCCCcccCEEECCCCccCccChhhhccCccC------CEEECCCCce
Confidence                                 33444443 24444566778888999998855 6677777777      6899999999


Q ss_pred             cccCCCchhhhhHHhHhhhCCCCcceecchh-hhcccccccccCCceee
Q psy5270         240 NEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQIMLEPRWVI  287 (352)
Q Consensus       240 ~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP~~-l~~l~~L~~l~~~~~~~  287 (352)
                      ++ ..|..|..+++|+.|+|++|+++.+|.. ++.+++|+.+....+|.
T Consensus       244 ~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          244 QV-IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             CE-ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             eE-EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            87 5778888999999999999999966654 68888888886555554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=1.2e-25  Score=216.66  Aligned_cols=229  Identities=22%  Similarity=0.221  Sum_probs=168.9

Q ss_pred             CCccEEEeeCCcCcccC-ccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccC
Q psy5270           2 LYITRITLSHNKLKEIP-PGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTY   80 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip-~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~   80 (352)
                      ++|++|+|++|.++.+| ..|+++++|++|+|++|.++.+++ ++.+++|++|+|++|.++.+|..    ++|+.|++++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~  108 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETLHAAN  108 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECCS
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcCEEECcC
Confidence            47999999999999665 689999999999999999996655 99999999999999999987754    7899999999


Q ss_pred             CCCCCCCCCCccccCccCcEEEccCCccccc-hhhccCcccHHHHHHhcchhhHhhcCceEeecccccccc-CCCCcccc
Q psy5270          81 NNLNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIV-GLPNLVPY  158 (352)
Q Consensus        81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~i-p~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~-~lp~l~~~  158 (352)
                      |.+++ ..+.   .+++|++|++++|+++.+ |..++++++|+.|+++..     ...+.++     ..+. .++.+.. 
T Consensus       109 N~l~~-~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-----~l~~~~~-----~~l~~~l~~L~~-  173 (487)
T 3oja_A          109 NNISR-VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-----EIDTVNF-----AELAASSDTLEH-  173 (487)
T ss_dssp             SCCCC-EEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS-----CCCEEEG-----GGGGGGTTTCCE-
T ss_pred             CcCCC-CCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC-----CCCCcCh-----HHHhhhCCcccE-
Confidence            99987 3332   457899999999999955 557888888887766641     1111110     1111 1233222 


Q ss_pred             ccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhcccc
Q psy5270         159 CASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNN  238 (352)
Q Consensus       159 ~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~  238 (352)
                                           +++++|.+++.. .......++.+++++|+++.+|..++.++.|      +.||+++|.
T Consensus       174 ---------------------L~Ls~N~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L------~~L~Ls~N~  225 (487)
T 3oja_A          174 ---------------------LNLQYNFIYDVK-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGV------TWISLRNNK  225 (487)
T ss_dssp             ---------------------EECTTSCCCEEE-CCCCCTTCCEEECCSSCCCEECGGGGGGTTC------SEEECTTSC
T ss_pred             ---------------------EecCCCcccccc-ccccCCCCCEEECCCCCCCCCCHhHcCCCCc------cEEEecCCc
Confidence                                 234456666553 2334566777888888888777766666666      688888888


Q ss_pred             ccccCCCchhhhhHHhHhhhCCCCcce--ecchhhhcccccccc
Q psy5270         239 LNEQSLPGNFFMLETLRALYLGDNDFE--VLPAEIGNLKNLQIM  280 (352)
Q Consensus       239 l~g~~iP~~~~~l~~L~~L~Ls~N~l~--~iP~~l~~l~~L~~l  280 (352)
                      +++  +|..++.+++|+.|++++|.+.  .+|..++.++.|+.+
T Consensus       226 l~~--lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l  267 (487)
T 3oja_A          226 LVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV  267 (487)
T ss_dssp             CCE--ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHH
T ss_pred             Ccc--cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEE
Confidence            875  6777888888888888888887  677778877777765

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.91  E-value=1e-25  Score=221.02  Aligned_cols=102  Identities=21%  Similarity=0.371  Sum_probs=89.0

Q ss_pred             CCCccEEEeeCCcCccc-CccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCcc--ccccCCCCCCCEEE
Q psy5270           1 MLYITRITLSHNKLKEI-PPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL--PRGFGAFPVLEVLD   77 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~~i-p~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~i--p~~~~~l~~L~~L~   77 (352)
                      +++|++|++++|+++.+ |..|+++++|++|+|++|+++.+|..  .+++|++|++++|+++.+  |..|+++++|++|+
T Consensus        75 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~  152 (562)
T 3a79_B           75 LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLG  152 (562)
T ss_dssp             CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEE
T ss_pred             CCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEe
Confidence            57899999999999966 67799999999999999999999987  899999999999999965  47899999999999


Q ss_pred             ccCCCCCCCCCCCccccCccC--cEEEccCCcc
Q psy5270          78 LTYNNLNEQSLPGNFFMLETL--RALYLGDNDF  108 (352)
Q Consensus        78 Ls~N~l~g~~~p~~~~~l~~L--~~L~l~~N~l  108 (352)
                      +++|++++ .   .+..+++|  ++|++++|++
T Consensus       153 L~~n~l~~-~---~~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          153 LSAAKFRQ-L---DLLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             EECSBCCT-T---TTGGGTTSCEEEEEEEESSC
T ss_pred             cCCCcccc-C---chhhhhhceeeEEEeecccc
Confidence            99999975 2   35555555  8888888877

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.91  E-value=1.7e-24  Score=198.21  Aligned_cols=223  Identities=24%  Similarity=0.336  Sum_probs=178.1

Q ss_pred             CCccEEEeeCCcCcccCc-cccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEcc
Q psy5270           2 LYITRITLSHNKLKEIPP-GLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLT   79 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~-~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls   79 (352)
                      +.+++|++++|+++.+|+ .|+++++|++|++++|+++.+ |..++++++|++|++++|+++.+|..+.  ++|+.|+++
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~  129 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVH  129 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECC
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECC
Confidence            478999999999997776 799999999999999999966 8899999999999999999999998776  799999999


Q ss_pred             CCCCCCCCCCCccccCccCcEEEccCCccc---cchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCcc
Q psy5270          80 YNNLNEQSLPGNFFMLETLRALYLGDNDFE---VLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLV  156 (352)
Q Consensus        80 ~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~---~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~  156 (352)
                      +|++++ ..+..|.++++|++|++++|+++   ..|..++++++|+.++++..                  .+..+|...
T Consensus       130 ~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n------------------~l~~l~~~~  190 (330)
T 1xku_A          130 ENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT------------------NITTIPQGL  190 (330)
T ss_dssp             SSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS------------------CCCSCCSSC
T ss_pred             CCcccc-cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC------------------ccccCCccc
Confidence            999987 45567899999999999999997   34667888888887765541                  111122111


Q ss_pred             ccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc-ccCCccCcccccccCCCccc-CCCCCcccchhhhhhhhhh
Q psy5270         157 PYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV-DTGLCKNPKIKMNRLSSLPR-GFGAFPVLEAFSFTTILDL  234 (352)
Q Consensus       157 ~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~-~~~~l~~l~l~~n~l~~ip~-~~~~l~~L~~~~~L~~L~l  234 (352)
                      .-     .+            ..+++++|++++..|..+ ....++.+++++|+++.++. .++.++.|      +.|++
T Consensus       191 ~~-----~L------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------~~L~L  247 (330)
T 1xku_A          191 PP-----SL------------TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL------RELHL  247 (330)
T ss_dssp             CT-----TC------------SEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC------CEEEC
T ss_pred             cc-----cC------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC------CEEEC
Confidence            00     00            123456677777766544 55678889999999996654 56666666      79999


Q ss_pred             ccccccccCCCchhhhhHHhHhhhCCCCcceecchh
Q psy5270         235 TYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE  270 (352)
Q Consensus       235 s~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP~~  270 (352)
                      ++|+++  .+|..+..+++|++|++++|+++.+|..
T Consensus       248 ~~N~l~--~lp~~l~~l~~L~~L~l~~N~i~~~~~~  281 (330)
T 1xku_A          248 NNNKLV--KVPGGLADHKYIQVVYLHNNNISAIGSN  281 (330)
T ss_dssp             CSSCCS--SCCTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred             CCCcCc--cCChhhccCCCcCEEECCCCcCCccChh
Confidence            999998  5899999999999999999999977654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=4.6e-26  Score=207.68  Aligned_cols=230  Identities=22%  Similarity=0.224  Sum_probs=170.1

Q ss_pred             CCccEEEeeCCcCcccC-ccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccC
Q psy5270           2 LYITRITLSHNKLKEIP-PGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTY   80 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip-~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~   80 (352)
                      ++|++||+++|+++.++ ..|+++++|++|+|++|+++.+++ +..+++|++|++++|+++.+|..    ++|+.|++++
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~----~~L~~L~l~~  108 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETLHAAN  108 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEEC----TTCCEEECCS
T ss_pred             CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccCC----CCcCEEECCC
Confidence            57899999999999665 579999999999999999986655 89999999999999999977643    7899999999


Q ss_pred             CCCCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccc
Q psy5270          81 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYC  159 (352)
Q Consensus        81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~  159 (352)
                      |++++ ..+.   .+++|++|++++|+++.+++ .++++++|++|+++..       .  +..+........++.+..  
T Consensus       109 n~l~~-~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N-------~--l~~~~~~~~~~~l~~L~~--  173 (317)
T 3o53_A          109 NNISR-VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-------E--IDTVNFAELAASSDTLEH--  173 (317)
T ss_dssp             SCCSE-EEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS-------C--CCEEEGGGGGGGTTTCCE--
T ss_pred             CccCC-cCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC-------C--CCcccHHHHhhccCcCCE--
Confidence            99986 3232   36789999999999996654 7788888887766641       1  111100000011222222  


Q ss_pred             cchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhccccc
Q psy5270         160 ASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNL  239 (352)
Q Consensus       160 ~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l  239 (352)
                                          +++++|.+++. |.......++.+++++|+++.+|..+..++.|      +.|++++|++
T Consensus       174 --------------------L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L------~~L~L~~N~l  226 (317)
T 3o53_A          174 --------------------LNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGV------TWISLRNNKL  226 (317)
T ss_dssp             --------------------EECTTSCCCEE-ECCCCCTTCCEEECCSSCCCEECGGGGGGTTC------SEEECTTSCC
T ss_pred             --------------------EECCCCcCccc-ccccccccCCEEECCCCcCCcchhhhcccCcc------cEEECcCCcc
Confidence                                23445555555 33334567788888888888887777666666      6888888888


Q ss_pred             cccCCCchhhhhHHhHhhhCCCCcce--ecchhhhcccccccc
Q psy5270         240 NEQSLPGNFFMLETLRALYLGDNDFE--VLPAEIGNLKNLQIM  280 (352)
Q Consensus       240 ~g~~iP~~~~~l~~L~~L~Ls~N~l~--~iP~~l~~l~~L~~l  280 (352)
                      ++  +|..+..+++|+.|++++|.++  .+|..++.+++|+.+
T Consensus       227 ~~--l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l  267 (317)
T 3o53_A          227 VL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV  267 (317)
T ss_dssp             CE--ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHH
T ss_pred             cc--hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEE
Confidence            74  7888888888888899888888  678888888888876

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.91  E-value=2.6e-26  Score=208.84  Aligned_cols=197  Identities=25%  Similarity=0.298  Sum_probs=133.3

Q ss_pred             CCCccEEEeeCCcCc-ccCccc--cCCCCCCEEEccCCcCcccccccCCC-----CCCcEEEccCCCCCccc-cccCCCC
Q psy5270           1 MLYITRITLSHNKLK-EIPPGL--ANLVNLEILTLFNNQIETLPTSLSSL-----PKLRILNLGMNRLSSLP-RGFGAFP   71 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~-~ip~~l--~~l~~L~~L~L~~N~l~~ip~~l~~L-----~~L~~L~L~~N~l~~ip-~~~~~l~   71 (352)
                      +++|++|++++|+++ .+|..+  +++++|++|+|++|+++.+|..++.+     ++|++|++++|+++.+| ..|++++
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  173 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP  173 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence            356778888888887 677765  77788888888888887667666666     77888888888887665 5677888


Q ss_pred             CCCEEEccCCCCCCCC--CCCcc--ccCccCcEEEccCCccccchh---h-ccCcccHHHHHHhcchhhHhhcCceEeec
Q psy5270          72 VLEVLDLTYNNLNEQS--LPGNF--FMLETLRALYLGDNDFEVLPA---E-IGNLKNLQIILETFLPDMMEKNRGHIVGI  143 (352)
Q Consensus        72 ~L~~L~Ls~N~l~g~~--~p~~~--~~l~~L~~L~l~~N~l~~ip~---~-~~nl~~L~~L~l~~~p~~~~~~~g~i~~i  143 (352)
                      +|+.|++++|++.| .  +|..+  +++++|++|++++|+++.+|.   . +.++++|+.|+                  
T Consensus       174 ~L~~L~Ls~N~l~~-~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~------------------  234 (312)
T 1wwl_A          174 ALSTLDLSDNPELG-ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLD------------------  234 (312)
T ss_dssp             SCCEEECCSCTTCH-HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEE------------------
T ss_pred             CCCEEECCCCCcCc-chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEE------------------
Confidence            88888888887765 3  23444  677788888888888774432   1 22333333222                  


Q ss_pred             cccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccC--cccccCCccCcccccccCCCcccCCCCCc
Q psy5270         144 SSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFP--FMVDTGLCKNPKIKMNRLSSLPRGFGAFP  221 (352)
Q Consensus       144 ss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P--~~~~~~~l~~l~l~~n~l~~ip~~~~~l~  221 (352)
                                                            +++|++++..|  .......++.+++++|+++.+|..+.  +
T Consensus       235 --------------------------------------Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~  274 (312)
T 1wwl_A          235 --------------------------------------LSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--A  274 (312)
T ss_dssp             --------------------------------------CTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--S
T ss_pred             --------------------------------------CCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--C
Confidence                                                  23344444432  22234567777788888887777665  4


Q ss_pred             ccchhhhhhhhhhccccccccCCCchhhhhHHhHhhhCCCCcce
Q psy5270         222 VLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE  265 (352)
Q Consensus       222 ~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~  265 (352)
                      .|      +.||+++|++++  +|. +..+++|++|+|++|.++
T Consensus       275 ~L------~~L~Ls~N~l~~--~p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          275 KL------SVLDLSYNRLDR--NPS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             EE------EEEECCSSCCCS--CCC-TTTSCEEEEEECTTCTTT
T ss_pred             Cc------eEEECCCCCCCC--Chh-HhhCCCCCEEeccCCCCC
Confidence            55      578888888875  465 777888888888888776

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.91  E-value=4.5e-25  Score=216.41  Aligned_cols=119  Identities=25%  Similarity=0.332  Sum_probs=66.6

Q ss_pred             CCccEEEeeCCcCcccC-ccccCCCCCCEEEccCCcCcccc-cccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEc
Q psy5270           2 LYITRITLSHNKLKEIP-PGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDL   78 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip-~~l~~l~~L~~L~L~~N~l~~ip-~~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~L   78 (352)
                      ++|++||+++|+++.+| ..|+++++|++|+|++|+++.+| ..|+++++|++|++++|+++.+|. .++++++|++|++
T Consensus        52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  131 (570)
T 2z63_A           52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV  131 (570)
T ss_dssp             SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEEC
T ss_pred             CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEec
Confidence            45555555555555443 33555555666666666555442 455556666666666666655544 3566666666666


Q ss_pred             cCCCCCCCCCCCccccCccCcEEEccCCccccc-hhhccCccc
Q psy5270          79 TYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIGNLKN  120 (352)
Q Consensus        79 s~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~i-p~~~~nl~~  120 (352)
                      ++|.+++..+|..|+++++|++|++++|+++.+ |..++++++
T Consensus       132 ~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  174 (570)
T 2z63_A          132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ  174 (570)
T ss_dssp             CSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHT
T ss_pred             CCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhc
Confidence            666665434566666666666666666666533 234444333

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=1.1e-24  Score=194.42  Aligned_cols=199  Identities=25%  Similarity=0.265  Sum_probs=129.3

Q ss_pred             CccEEEeeCCcCcccCc-cccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCccc-cccCCCCCCCEEEcc
Q psy5270           3 YITRITLSHNKLKEIPP-GLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLP-RGFGAFPVLEVLDLT   79 (352)
Q Consensus         3 ~L~~L~Ls~N~l~~ip~-~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~ip-~~~~~l~~L~~L~Ls   79 (352)
                      +|++|++++|+++.+|+ .|+++++|++|++++|+++.+++ .+.++++|++|++++|+++.++ ..|+++++|+.|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            47777777777776554 67777777777777777775543 6777777777777777777554 457777777777777


Q ss_pred             CCCCCCCCCCCccccCccCcEEEccCCcccc--chhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccc
Q psy5270          80 YNNLNEQSLPGNFFMLETLRALYLGDNDFEV--LPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVP  157 (352)
Q Consensus        80 ~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~--ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~  157 (352)
                      +|++++ ..+..++++++|++|++++|+++.  +|..++++++|+.++++.                             
T Consensus       109 ~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~-----------------------------  158 (276)
T 2z62_A          109 ETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-----------------------------  158 (276)
T ss_dssp             TSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-----------------------------
T ss_pred             CCCccc-cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCC-----------------------------
Confidence            777775 334467777777777777777764  566777666666554432                             


Q ss_pred             cccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc-ccCCcc----CcccccccCCCcccCCCCCcccchhhhhhhh
Q psy5270         158 YCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV-DTGLCK----NPKIKMNRLSSLPRGFGAFPVLEAFSFTTIL  232 (352)
Q Consensus       158 ~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~-~~~~l~----~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L  232 (352)
                                                 |+++++.+..+ ....++    .+++++|+++.+|........|      +.|
T Consensus       159 ---------------------------N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L------~~L  205 (276)
T 2z62_A          159 ---------------------------NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL------KEL  205 (276)
T ss_dssp             ---------------------------SCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCE------EEE
T ss_pred             ---------------------------CCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcc------cEE
Confidence                                       12222111111 111111    4567777777776655444445      678


Q ss_pred             hhccccccccCCCchhhhhHHhHhhhCCCCcce
Q psy5270         233 DLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE  265 (352)
Q Consensus       233 ~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~  265 (352)
                      ++++|++++ ..+..+..+++|++|++++|.++
T Consensus       206 ~L~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          206 ALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             ECCSSCCSC-CCTTTTTTCCSCCEEECCSSCBC
T ss_pred             ECCCCceee-cCHhHhcccccccEEEccCCccc
Confidence            888888875 33444677888888888888887

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.91  E-value=3.2e-25  Score=212.66  Aligned_cols=261  Identities=21%  Similarity=0.240  Sum_probs=162.2

Q ss_pred             CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCC
Q psy5270           2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYN   81 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N   81 (352)
                      ++++.|+++++.++.+|. +..+++|++|++++|.++.+|+ ++++++|++|++++|+++.+++ ++++++|+.|++++|
T Consensus        46 ~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n  122 (466)
T 1o6v_A           46 DQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN  122 (466)
T ss_dssp             HTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred             ccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC
Confidence            578999999999999885 8889999999999999998877 9999999999999999998887 999999999999999


Q ss_pred             CCCCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcc----hhhHhhcCceEeecc-----ccccccCC
Q psy5270          82 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFL----PDMMEKNRGHIVGIS-----SMAGIVGL  152 (352)
Q Consensus        82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~----p~~~~~~~g~i~~is-----s~~~l~~l  152 (352)
                      .+++  +|. ++++++|++|++++|+++.+|. ++++++|+.+.++..    +...........+++     ....+..+
T Consensus       123 ~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l  198 (466)
T 1o6v_A          123 QITD--IDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL  198 (466)
T ss_dssp             CCCC--CGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGC
T ss_pred             CCCC--ChH-HcCCCCCCEEECCCCccCCChh-hccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccC
Confidence            9986  454 9999999999999999998764 777777776654320    000000001111111     01112222


Q ss_pred             CCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhh
Q psy5270         153 PNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTIL  232 (352)
Q Consensus       153 p~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L  232 (352)
                      +.+.....+.+.+.+........-...+++++|++.+. +.......++.+++++|+++.++. ++.++.|      +.|
T Consensus       199 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L------~~L  270 (466)
T 1o6v_A          199 TNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP-LSGLTKL------TEL  270 (466)
T ss_dssp             TTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTC------SEE
T ss_pred             CCCCEEEecCCcccccccccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchh-hhcCCCC------CEE
Confidence            33322222222222211100000001122333333332 222233344445555555554333 3333333      567


Q ss_pred             hhccccccccCCCchhhhhHHhHhhhCCCCcceecchhhhccccccccc
Q psy5270         233 DLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIML  281 (352)
Q Consensus       233 ~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP~~l~~l~~L~~l~  281 (352)
                      ++++|.+++  +|. +..+++|+.|++++|+++.+|+ ++.+++|+.+.
T Consensus       271 ~l~~n~l~~--~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~  315 (466)
T 1o6v_A          271 KLGANQISN--ISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLT  315 (466)
T ss_dssp             ECCSSCCCC--CGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEE
T ss_pred             ECCCCccCc--ccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEE
Confidence            777777764  333 6667777777777777775554 66667776664

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.91  E-value=1.6e-24  Score=217.08  Aligned_cols=278  Identities=18%  Similarity=0.165  Sum_probs=196.4

Q ss_pred             CCCccEEEeeCCcCccc-CccccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCccc-cccCCCCCCCEEE
Q psy5270           1 MLYITRITLSHNKLKEI-PPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLP-RGFGAFPVLEVLD   77 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~~i-p~~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~ip-~~~~~l~~L~~L~   77 (352)
                      +++|++||+++|.++.+ |..++++++|++|+|++|+++.+|+ .|+++++|++|++++|+++.+| ..|+++++|++|+
T Consensus        48 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  127 (680)
T 1ziw_A           48 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD  127 (680)
T ss_dssp             GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEE
T ss_pred             CCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEE
Confidence            46899999999999954 6678999999999999999998876 6999999999999999999876 5699999999999


Q ss_pred             ccCCCCCCCCCCCccccCccCcEEEccCCccccchh-hcc--CcccHHHHHHhcc------hhhHhhcC-ceEeeccccc
Q psy5270          78 LTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIG--NLKNLQIILETFL------PDMMEKNR-GHIVGISSMA  147 (352)
Q Consensus        78 Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~--nl~~L~~L~l~~~------p~~~~~~~-g~i~~iss~~  147 (352)
                      +++|.+++ ..|..++++++|++|++++|+++.+++ .++  ++++|+.++++..      |....... .....+....
T Consensus       128 Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~  206 (680)
T 1ziw_A          128 LSHNGLSS-TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ  206 (680)
T ss_dssp             CCSSCCSC-CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCC
T ss_pred             CCCCcccc-cCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccc
Confidence            99999998 678889999999999999999996654 443  4577877777642      11111100 0000000000


Q ss_pred             c----------ccCCCCccccccchhhhhhhhHHhHHHH----HHHHhcCCceeecccCccc-ccCCccCcccccccCCC
Q psy5270         148 G----------IVGLPNLVPYCASKFAVRGLMEALAEEL----REDARNSKIKFTSIFPFMV-DTGLCKNPKIKMNRLSS  212 (352)
Q Consensus       148 ~----------l~~lp~l~~~~~s~~~l~~~~~~l~~~l----~~~~~~~~n~~~g~~P~~~-~~~~l~~l~l~~n~l~~  212 (352)
                      .          ....+.+.....+.+.+.+........+    ...+++++|++++..|..+ ....++.+++++|+++.
T Consensus       207 l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  286 (680)
T 1ziw_A          207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH  286 (680)
T ss_dssp             CHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSE
T ss_pred             cChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCc
Confidence            0          0011222223333332222111111111    1244677888888877644 56788899999999994


Q ss_pred             -cccCCCCCcccchhhhhhhhhhcccccccc----CCCc----hhhhhHHhHhhhCCCCcce-ecchhhhcccccccccC
Q psy5270         213 -LPRGFGAFPVLEAFSFTTILDLTYNNLNEQ----SLPG----NFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQIMLE  282 (352)
Q Consensus       213 -ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~----~iP~----~~~~l~~L~~L~Ls~N~l~-~iP~~l~~l~~L~~l~~  282 (352)
                       .|..++.++.|      +.|++++|...+.    .+|.    .|..+++|++|++++|+++ ..|..++++++|+.+..
T Consensus       287 ~~~~~~~~l~~L------~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  360 (680)
T 1ziw_A          287 LFSHSLHGLFNV------RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL  360 (680)
T ss_dssp             ECTTTTTTCTTC------CEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEEC
T ss_pred             cChhhhcCCCCc------cEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEEC
Confidence             56678888877      6999998765531    2444    7889999999999999999 55667999999999865


Q ss_pred             Cce
Q psy5270         283 PRW  285 (352)
Q Consensus       283 ~~~  285 (352)
                      ..+
T Consensus       361 s~n  363 (680)
T 1ziw_A          361 SNS  363 (680)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.91  E-value=3.2e-24  Score=205.07  Aligned_cols=116  Identities=24%  Similarity=0.305  Sum_probs=91.7

Q ss_pred             CCCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccC
Q psy5270           1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTY   80 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~   80 (352)
                      +++|++|++++|+++.+|  ++++++|++|++++|+++.+|  ++++++|++|++++|+++.+|  ++++++|+.|++++
T Consensus        63 l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~  136 (457)
T 3bz5_A           63 LTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCAR  136 (457)
T ss_dssp             CTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTT
T ss_pred             cCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCC
Confidence            468899999999998876  888899999999999988775  888899999999999988876  78888899999999


Q ss_pred             CCCCCCCCCCccccCccCcEEEccCCcc-ccchhhccCcccHHHHHHhc
Q psy5270          81 NNLNEQSLPGNFFMLETLRALYLGDNDF-EVLPAEIGNLKNLQIILETF  128 (352)
Q Consensus        81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l-~~ip~~~~nl~~L~~L~l~~  128 (352)
                      |++++  +|  ++++++|++|++++|+. ..+  .++++++|+.++++.
T Consensus       137 N~l~~--l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~  179 (457)
T 3bz5_A          137 NTLTE--ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF  179 (457)
T ss_dssp             SCCSC--CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred             Cccce--ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence            88886  33  67777777777777743 345  356666666665543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=2e-25  Score=215.15  Aligned_cols=212  Identities=19%  Similarity=0.141  Sum_probs=173.4

Q ss_pred             CCCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccC
Q psy5270           1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTY   80 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~   80 (352)
                      +++|++|+|++|.++.+++ ++++++|++|+|++|.++.+|..    ++|++|++++|.++.+|..  .+++|+.|++++
T Consensus        57 l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~  129 (487)
T 3oja_A           57 FTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETLHAANNNISRVSCS--RGQGKKNIYLAN  129 (487)
T ss_dssp             CTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECCSSCCCCEEEC--CCSSCEEEECCS
T ss_pred             CCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcCEEECcCCcCCCCCcc--ccCCCCEEECCC
Confidence            5789999999999996555 99999999999999999987653    8899999999999987763  568999999999


Q ss_pred             CCCCCCCCCCccccCccCcEEEccCCcccc-chhhcc-CcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCcccc
Q psy5270          81 NNLNEQSLPGNFFMLETLRALYLGDNDFEV-LPAEIG-NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPY  158 (352)
Q Consensus        81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~-ip~~~~-nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~  158 (352)
                      |.+++ ..|..++++++|++|++++|+++. +|..++ ++++|+.|++++.         .+.++   .....++.+.. 
T Consensus       130 N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N---------~l~~~---~~~~~l~~L~~-  195 (487)
T 3oja_A          130 NKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN---------FIYDV---KGQVVFAKLKT-  195 (487)
T ss_dssp             SCCCS-GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS---------CCCEE---ECCCCCTTCCE-
T ss_pred             CCCCC-CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC---------ccccc---cccccCCCCCE-
Confidence            99998 678899999999999999999994 677776 7888888877751         11111   11112333332 


Q ss_pred             ccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhcccc
Q psy5270         159 CASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNN  238 (352)
Q Consensus       159 ~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~  238 (352)
                                           +++++|.++++.|.+.....++.+++++|+++.+|..++.++.|      +.|++++|.
T Consensus       196 ---------------------L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L------~~L~l~~N~  248 (487)
T 3oja_A          196 ---------------------LDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNL------EHFDLRGNG  248 (487)
T ss_dssp             ---------------------EECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTC------CEEECTTCC
T ss_pred             ---------------------EECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCC------CEEEcCCCC
Confidence                                 34667888888777667788999999999999999998888887      699999999


Q ss_pred             ccccCCCchhhhhHHhHhhhCC
Q psy5270         239 LNEQSLPGNFFMLETLRALYLG  260 (352)
Q Consensus       239 l~g~~iP~~~~~l~~L~~L~Ls  260 (352)
                      +..+.+|..++.++.|+.++++
T Consensus       249 l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          249 FHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             BCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CcCcchHHHHHhCCCCcEEecc
Confidence            9833789999999999999986

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.90  E-value=5.2e-25  Score=202.93  Aligned_cols=247  Identities=17%  Similarity=0.256  Sum_probs=162.2

Q ss_pred             ccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCCCCCCCCCCccccCccCcE
Q psy5270          21 LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRA  100 (352)
Q Consensus        21 l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~  100 (352)
                      +..+++|++|++++|.+..+|. +..+++|++|++++|+++.+|. ++++++|++|++++|.+++  +| .+.++++|++
T Consensus        40 ~~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~--~~-~~~~l~~L~~  114 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITD--IS-ALQNLTNLRE  114 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC--CG-GGTTCTTCSE
T ss_pred             chhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccC--ch-HHcCCCcCCE
Confidence            4567899999999999998875 8999999999999999999988 9999999999999999986  44 6999999999


Q ss_pred             EEccCCccccchhhccCcccHHHHHHhcchh------hHhhcCceEeecc-----ccccccCCCCccccccchhhhhhhh
Q psy5270         101 LYLGDNDFEVLPAEIGNLKNLQIILETFLPD------MMEKNRGHIVGIS-----SMAGIVGLPNLVPYCASKFAVRGLM  169 (352)
Q Consensus       101 L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~------~~~~~~g~i~~is-----s~~~l~~lp~l~~~~~s~~~l~~~~  169 (352)
                      |++++|+++.+|. +.++++|+.++++..+.      ...........++     ....+..++.+.....+.+.+....
T Consensus       115 L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  193 (347)
T 4fmz_A          115 LYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDIS  193 (347)
T ss_dssp             EECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCG
T ss_pred             EECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccc
Confidence            9999999998877 88888888887765321      0000011111111     1111233344433333333333221


Q ss_pred             HHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhccccccccCCCchhh
Q psy5270         170 EALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFF  249 (352)
Q Consensus       170 ~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~  249 (352)
                      ......-...+.++++.+.+..+ ......++.+++++|+++.+|. +..++.|      +.|++++|.+++  + +.+.
T Consensus       194 ~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L------~~L~l~~n~l~~--~-~~~~  262 (347)
T 4fmz_A          194 PLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQL------TWLEIGTNQISD--I-NAVK  262 (347)
T ss_dssp             GGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTC------CEEECCSSCCCC--C-GGGT
T ss_pred             cccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCC------CEEECCCCccCC--C-hhHh
Confidence            10000000122233444444333 3344556667777777776655 5555555      678888888764  3 4577


Q ss_pred             hhHHhHhhhCCCCcceecchhhhcccccccccCCce
Q psy5270         250 MLETLRALYLGDNDFEVLPAEIGNLKNLQIMLEPRW  285 (352)
Q Consensus       250 ~l~~L~~L~Ls~N~l~~iP~~l~~l~~L~~l~~~~~  285 (352)
                      .+++|++|++++|+++.+| .++.+++|+.+....+
T Consensus       263 ~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n  297 (347)
T 4fmz_A          263 DLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNN  297 (347)
T ss_dssp             TCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSS
T ss_pred             cCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCC
Confidence            7888888888888887664 4777777777744433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.90  E-value=5.1e-24  Score=202.83  Aligned_cols=220  Identities=22%  Similarity=0.291  Sum_probs=169.0

Q ss_pred             CCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccc-cccCCCCCCCEEEccCCCCCCCCCCCccccCccCcEEEcc
Q psy5270          26 NLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP-RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLG  104 (352)
Q Consensus        26 ~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~  104 (352)
                      ..+.++.+++.++.+|..+.  ++++.|+|++|+++.++ ..|+++++|+.|+|++|++++ ..|..|.++++|++|+|+
T Consensus        44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT-IEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCE-ECGGGGTTCSSCCEEECC
T ss_pred             CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCc-cChhhccCCccCCEEECC
Confidence            46789999999999998776  68999999999999775 679999999999999999987 456789999999999999


Q ss_pred             CCccccchh-hccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcC
Q psy5270         105 DNDFEVLPA-EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNS  183 (352)
Q Consensus       105 ~N~l~~ip~-~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~  183 (352)
                      +|+++.+|. .|.++++|+.|+++...         +..+. ...+..++.+.....+.+                    
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~---------i~~~~-~~~~~~l~~L~~L~l~~~--------------------  170 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNP---------IESIP-SYAFNRIPSLRRLDLGEL--------------------  170 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCC---------CCEEC-TTTTTTCTTCCEEECCCC--------------------
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCc---------ccccC-HHHhhhCcccCEeCCCCC--------------------
Confidence            999998876 68999999888776511         11111 112333444433322210                    


Q ss_pred             CceeecccCc-ccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhccccccccCCCchhhhhHHhHhhhCCCC
Q psy5270         184 KIKFTSIFPF-MVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDN  262 (352)
Q Consensus       184 ~n~~~g~~P~-~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N  262 (352)
                       +.+..+.+. +.....++.+++++|+++.+|. +..++.|      +.|||++|++++ ..|..|..+++|+.|+|++|
T Consensus       171 -~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L------~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n  241 (440)
T 3zyj_A          171 -KRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKL------DELDLSGNHLSA-IRPGSFQGLMHLQKLWMIQS  241 (440)
T ss_dssp             -TTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSC------CEEECTTSCCCE-ECTTTTTTCTTCCEEECTTC
T ss_pred             -CCcceeCcchhhcccccCeecCCCCcCccccc-cCCCccc------CEEECCCCccCc-cChhhhccCccCCEEECCCC
Confidence             222223332 2256678889999999998884 5666666      799999999998 67999999999999999999


Q ss_pred             cce-ecchhhhcccccccccCCceee
Q psy5270         263 DFE-VLPAEIGNLKNLQIMLEPRWVI  287 (352)
Q Consensus       263 ~l~-~iP~~l~~l~~L~~l~~~~~~~  287 (352)
                      +++ ..|..++++++|+.|+...+.+
T Consensus       242 ~l~~~~~~~~~~l~~L~~L~L~~N~l  267 (440)
T 3zyj_A          242 QIQVIERNAFDNLQSLVEINLAHNNL  267 (440)
T ss_dssp             CCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred             ceeEEChhhhcCCCCCCEEECCCCCC
Confidence            999 5566799999999986554433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.90  E-value=6.6e-24  Score=202.74  Aligned_cols=219  Identities=21%  Similarity=0.262  Sum_probs=168.2

Q ss_pred             CCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCcc-ccccCCCCCCCEEEccCCCCCCCCCCCccccCccCcEEEcc
Q psy5270          26 NLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL-PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLG  104 (352)
Q Consensus        26 ~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~  104 (352)
                      ....++.+++.++.+|..+.  +++++|+|++|+++.+ |..|+++++|+.|+|++|++++ ..|..|.++++|++|+|+
T Consensus        55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCC-cChhhccCcccCCEEECC
Confidence            46789999999999998765  6899999999999966 5679999999999999999997 567899999999999999


Q ss_pred             CCccccchh-hccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcC
Q psy5270         105 DNDFEVLPA-EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNS  183 (352)
Q Consensus       105 ~N~l~~ip~-~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~  183 (352)
                      +|+++.+|. .++++++|++|+++...         +..+. ...+..++.+.....+.+                    
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~---------l~~~~-~~~~~~l~~L~~L~l~~~--------------------  181 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNP---------IESIP-SYAFNRVPSLMRLDLGEL--------------------  181 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCC---------CCEEC-TTTTTTCTTCCEEECCCC--------------------
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCC---------cceeC-HhHHhcCCcccEEeCCCC--------------------
Confidence            999998776 58889999988776511         11111 122334444433332210                    


Q ss_pred             CceeecccCc-ccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhccccccccCCCchhhhhHHhHhhhCCCC
Q psy5270         184 KIKFTSIFPF-MVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDN  262 (352)
Q Consensus       184 ~n~~~g~~P~-~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N  262 (352)
                       +.+..+.+. +.....++.+++++|+++.+|. +..++.|      +.|+|++|.+++ ..|..|..+++|+.|+|++|
T Consensus       182 -~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L------~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n  252 (452)
T 3zyi_A          182 -KKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGL------EELEMSGNHFPE-IRPGSFHGLSSLKKLWVMNS  252 (452)
T ss_dssp             -TTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTC------CEEECTTSCCSE-ECGGGGTTCTTCCEEECTTS
T ss_pred             -CCccccChhhccCCCCCCEEECCCCccccccc-ccccccc------cEEECcCCcCcc-cCcccccCccCCCEEEeCCC
Confidence             222222222 2245678889999999998874 5566666      799999999998 67899999999999999999


Q ss_pred             cce-ecchhhhcccccccccCCcee
Q psy5270         263 DFE-VLPAEIGNLKNLQIMLEPRWV  286 (352)
Q Consensus       263 ~l~-~iP~~l~~l~~L~~l~~~~~~  286 (352)
                      +++ ..|..++++++|+.|+..++.
T Consensus       253 ~l~~~~~~~~~~l~~L~~L~L~~N~  277 (452)
T 3zyi_A          253 QVSLIERNAFDGLASLVELNLAHNN  277 (452)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             cCceECHHHhcCCCCCCEEECCCCc
Confidence            999 557779999999998655443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=1.7e-23  Score=186.34  Aligned_cols=197  Identities=30%  Similarity=0.425  Sum_probs=147.5

Q ss_pred             CccEEEeeCCcCcccCccccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEccC
Q psy5270           3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTY   80 (352)
Q Consensus         3 ~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~Ls~   80 (352)
                      ..+.+++++++++.+|..+.  +++++|++++|+++.+|+ .+.++++|++|++++|+++.+|.. |.++++|++|++++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            46789999999999998876  589999999999997765 899999999999999999998876 58899999999999


Q ss_pred             CCCCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccc
Q psy5270          81 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYC  159 (352)
Q Consensus        81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~  159 (352)
                      |++++ ..+..|.++++|++|++++|+++.+|+ .++++++|+.|+++.                               
T Consensus        95 n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-------------------------------  142 (270)
T 2o6q_A           95 NKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY-------------------------------  142 (270)
T ss_dssp             SCCCC-CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-------------------------------
T ss_pred             CcCCc-CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCC-------------------------------
Confidence            99987 445577899999999999999997665 466666665543332                               


Q ss_pred             cchhhhhhhhHHhHHHHHHHHhcCCceeecccCcc-cccCCccCcccccccCCCcccC-CCCCcccchhhhhhhhhhccc
Q psy5270         160 ASKFAVRGLMEALAEELREDARNSKIKFTSIFPFM-VDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILDLTYN  237 (352)
Q Consensus       160 ~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~-~~~~~l~~l~l~~n~l~~ip~~-~~~l~~L~~~~~L~~L~ls~N  237 (352)
                                               |+++++.+.. .....++.+++++|+++.+|.. +..++.|      +.|++++|
T Consensus       143 -------------------------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L------~~L~L~~N  191 (270)
T 2o6q_A          143 -------------------------NELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTEL------KTLKLDNN  191 (270)
T ss_dssp             -------------------------SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC------CEEECCSS
T ss_pred             -------------------------CcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCc------CEEECCCC
Confidence                                     2222222221 1334556667777777766543 5555555      57777777


Q ss_pred             cccccCCCchhhhhHHhHhhhCCCCcce
Q psy5270         238 NLNEQSLPGNFFMLETLRALYLGDNDFE  265 (352)
Q Consensus       238 ~l~g~~iP~~~~~l~~L~~L~Ls~N~l~  265 (352)
                      ++++ ..+..+..+++|+.|+|++|.+.
T Consensus       192 ~l~~-~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          192 QLKR-VPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CCSC-CCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cCCc-CCHHHhccccCCCEEEecCCCee
Confidence            7765 33445667777777777777776

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=4.9e-24  Score=189.99  Aligned_cols=204  Identities=27%  Similarity=0.329  Sum_probs=149.2

Q ss_pred             CCCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEcc
Q psy5270           1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLT   79 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~Ls   79 (352)
                      +++|+.|++++|.++.++ +++.+++|++|++++|.++.++ .++.+++|++|++++|+++.+|+. ++++++|+.|+++
T Consensus        40 l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  117 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV  117 (272)
T ss_dssp             HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             ccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence            357889999999988766 4788899999999999998764 788999999999999999977665 7889999999999


Q ss_pred             CCCCCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCcccc
Q psy5270          80 YNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPY  158 (352)
Q Consensus        80 ~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~  158 (352)
                      +|++++ ..|..|+++++|++|++++|+++.+|+ .++++++|+.++++                               
T Consensus       118 ~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~-------------------------------  165 (272)
T 3rfs_A          118 ENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS-------------------------------  165 (272)
T ss_dssp             TSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-------------------------------
T ss_pred             CCcCCc-cCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECC-------------------------------
Confidence            999987 455668889999999999999997765 35666666544332                               


Q ss_pred             ccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcc-cccCCccCcccccccCCCcccC-CCCCcccchhhhhhhhhhcc
Q psy5270         159 CASKFAVRGLMEALAEELREDARNSKIKFTSIFPFM-VDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILDLTY  236 (352)
Q Consensus       159 ~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~-~~~~~l~~l~l~~n~l~~ip~~-~~~l~~L~~~~~L~~L~ls~  236 (352)
                                               +|++++..+.. .....++.+++++|+++.+|.. ++.++.|      +.|++++
T Consensus       166 -------------------------~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L------~~L~l~~  214 (272)
T 3rfs_A          166 -------------------------YNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL------QYIWLHD  214 (272)
T ss_dssp             -------------------------SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC------CEEECCS
T ss_pred             -------------------------CCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCC------CEEEccC
Confidence                                     23333333332 1344566677777777755543 4555555      5777777


Q ss_pred             ccccccCCCchhhhhHHhHhhhCCCCcce-ecchhhhccccc
Q psy5270         237 NNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNL  277 (352)
Q Consensus       237 N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~-~iP~~l~~l~~L  277 (352)
                      |.+.+ ..|       +|+.|+++.|+++ .+|.+++.+...
T Consensus       215 N~~~~-~~~-------~l~~l~~~~n~~~g~ip~~~~~~~~~  248 (272)
T 3rfs_A          215 NPWDC-TCP-------GIRYLSEWINKHSGVVRNSAGSVAPD  248 (272)
T ss_dssp             SCBCC-CTT-------TTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred             CCccc-cCc-------HHHHHHHHHHhCCCcccCcccccCCC
Confidence            77765 333       4677777777777 777777666544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.90  E-value=1.9e-24  Score=196.17  Aligned_cols=196  Identities=23%  Similarity=0.316  Sum_probs=155.2

Q ss_pred             CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCC
Q psy5270           2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYN   81 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N   81 (352)
                      ++|++|++++|.++.+| ++..+++|++|++++|+++.+++ +..+++|++|++++|+++.+| .++.+++|+.|++++|
T Consensus        41 ~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n  117 (308)
T 1h6u_A           41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST  117 (308)
T ss_dssp             HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS
T ss_pred             CCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCC
Confidence            57899999999999887 68889999999999999998877 999999999999999999886 5899999999999999


Q ss_pred             CCCCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccc
Q psy5270          82 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCAS  161 (352)
Q Consensus        82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s  161 (352)
                      ++++  +|. +..+++|++|++++|+++.+|. ++++++|+.|+++                                  
T Consensus       118 ~l~~--~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~----------------------------------  159 (308)
T 1h6u_A          118 QITD--VTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIG----------------------------------  159 (308)
T ss_dssp             CCCC--CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECC----------------------------------
T ss_pred             CCCC--chh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEcc----------------------------------
Confidence            9986  454 8899999999999999998776 6666666544332                                  


Q ss_pred             hhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhccccccc
Q psy5270         162 KFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNE  241 (352)
Q Consensus       162 ~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g  241 (352)
                                            +|.+++..+ ......++.+++++|+++.+|. +..++.|      +.|++++|++++
T Consensus       160 ----------------------~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L------~~L~L~~N~l~~  209 (308)
T 1h6u_A          160 ----------------------NAQVSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNL------IEVHLKNNQISD  209 (308)
T ss_dssp             ----------------------SSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTC------CEEECTTSCCCB
T ss_pred             ----------------------CCcCCCChh-hcCCCCCCEEECCCCccCcChh-hcCCCCC------CEEEccCCccCc
Confidence                                  223333222 2344566778888888887765 4455555      789999999986


Q ss_pred             cCCCchhhhhHHhHhhhCCCCcceecchhh
Q psy5270         242 QSLPGNFFMLETLRALYLGDNDFEVLPAEI  271 (352)
Q Consensus       242 ~~iP~~~~~l~~L~~L~Ls~N~l~~iP~~l  271 (352)
                        +| .+..+++|+.|++++|.++..|..+
T Consensus       210 --~~-~l~~l~~L~~L~l~~N~i~~~~~~~  236 (308)
T 1h6u_A          210 --VS-PLANTSNLFIVTLTNQTITNQPVFY  236 (308)
T ss_dssp             --CG-GGTTCTTCCEEEEEEEEEECCCEEC
T ss_pred             --cc-cccCCCCCCEEEccCCeeecCCeee
Confidence              44 3888899999999999988766544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.89  E-value=2.2e-24  Score=221.22  Aligned_cols=261  Identities=21%  Similarity=0.192  Sum_probs=176.8

Q ss_pred             cEEEeeCCcCcccCccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCC-cc-ccccCCCCCCCEEEccCC
Q psy5270           5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLS-SL-PRGFGAFPVLEVLDLTYN   81 (352)
Q Consensus         5 ~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~-~i-p~~~~~l~~L~~L~Ls~N   81 (352)
                      ...|.++++++.||.   -.+++++|||++|+++.+ |..|.++++|++|+|++|.+. .+ |..|+++++|++|+|++|
T Consensus         7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N   83 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS   83 (844)
T ss_dssp             EEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred             eEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence            467899999999998   347899999999999955 789999999999999999655 77 677999999999999999


Q ss_pred             CCCCCCCCCccccCccCcEEEccCCccc-cchhh--ccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCcccc
Q psy5270          82 NLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAE--IGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPY  158 (352)
Q Consensus        82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~-~ip~~--~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~  158 (352)
                      ++++ ..|..|+++++|++|+|++|+++ .+|..  ++++++|+.|+++...         +........+..++.+...
T Consensus        84 ~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~---------l~~~~~~~~~~~L~~L~~L  153 (844)
T 3j0a_A           84 KIYF-LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ---------IRSLYLHPSFGKLNSLKSI  153 (844)
T ss_dssp             CCCE-ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC---------CCCCCCCGGGGTCSSCCEE
T ss_pred             cCcc-cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc---------ccccccchhHhhCCCCCEE
Confidence            9998 67999999999999999999999 46665  9999999999887521         1111111233445555444


Q ss_pred             ccchhhhhhhhHHhHHHHH----HHHhcCCceeecccCcccc--------------------------------------
Q psy5270         159 CASKFAVRGLMEALAEELR----EDARNSKIKFTSIFPFMVD--------------------------------------  196 (352)
Q Consensus       159 ~~s~~~l~~~~~~l~~~l~----~~~~~~~n~~~g~~P~~~~--------------------------------------  196 (352)
                      ..+.+.+.+........+.    ..+.++.|.+.+..|..+.                                      
T Consensus       154 ~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l  233 (844)
T 3j0a_A          154 DFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA  233 (844)
T ss_dssp             EEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCB
T ss_pred             ECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccc
Confidence            4444443322111111110    1122333333332221110                                      


Q ss_pred             -------------------------------cCCccCcccccccCCCc-ccCCCCCcccchhhhhhhhhhccccccccCC
Q psy5270         197 -------------------------------TGLCKNPKIKMNRLSSL-PRGFGAFPVLEAFSFTTILDLTYNNLNEQSL  244 (352)
Q Consensus       197 -------------------------------~~~l~~l~l~~n~l~~i-p~~~~~l~~L~~~~~L~~L~ls~N~l~g~~i  244 (352)
                                                     ...++.++++.|.++.+ |..++.++.|      +.|++++|++++ ..
T Consensus       234 ~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L------~~L~L~~n~i~~-~~  306 (844)
T 3j0a_A          234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDL------KVLNLAYNKINK-IA  306 (844)
T ss_dssp             SEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCC------CEEEEESCCCCE-EC
T ss_pred             cceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCC------CEEECCCCcCCC-CC
Confidence                                           01233344555555522 3444445544      678888888876 56


Q ss_pred             CchhhhhHHhHhhhCCCCcce-ecchhhhcccccccccCCce
Q psy5270         245 PGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQIMLEPRW  285 (352)
Q Consensus       245 P~~~~~l~~L~~L~Ls~N~l~-~iP~~l~~l~~L~~l~~~~~  285 (352)
                      |..|..+++|++|+|++|+++ ..|..++++++|+.+....+
T Consensus       307 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  348 (844)
T 3j0a_A          307 DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN  348 (844)
T ss_dssp             TTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSC
T ss_pred             hHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCC
Confidence            777888888888888888887 44667888888887754433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.89  E-value=5.8e-24  Score=208.53  Aligned_cols=243  Identities=22%  Similarity=0.230  Sum_probs=140.0

Q ss_pred             CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCC
Q psy5270           2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYN   81 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N   81 (352)
                      ++|+.|++++|.++++|+.+..+ +|++|++++|.++.+|.  ..+++|+.|++++|.+...... +.+++|+.|++++|
T Consensus       282 ~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n  357 (570)
T 2z63_A          282 TNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRN  357 (570)
T ss_dssp             TTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSS
T ss_pred             CcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCC
Confidence            34555555555555555555555 55555555555555544  3455555555555555422111 45566666666666


Q ss_pred             CCCCCCC--CCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccc
Q psy5270          82 NLNEQSL--PGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYC  159 (352)
Q Consensus        82 ~l~g~~~--p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~  159 (352)
                      ++++ ..  |..+.++++|++|++++|+++.+|..++++++|+.++++.         ..+........+..++.+..  
T Consensus       358 ~l~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~---------n~l~~~~~~~~~~~l~~L~~--  425 (570)
T 2z63_A          358 GLSF-KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH---------SNLKQMSEFSVFLSLRNLIY--  425 (570)
T ss_dssp             CCBE-EEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTT---------SEEESCTTSCTTTTCTTCCE--
T ss_pred             ccCc-cccccccccccCccCEEECCCCccccccccccccCCCCEEEccC---------CccccccchhhhhcCCCCCE--
Confidence            6654 11  4555566666666666666665555555555555554432         11111111111222222221  


Q ss_pred             cchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc-ccCCccCcccccccCC--CcccCCCCCcccchhhhhhhhhhcc
Q psy5270         160 ASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV-DTGLCKNPKIKMNRLS--SLPRGFGAFPVLEAFSFTTILDLTY  236 (352)
Q Consensus       160 ~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~-~~~~l~~l~l~~n~l~--~ip~~~~~l~~L~~~~~L~~L~ls~  236 (352)
                                          ++++++.+.+..|..+ ....++.+++++|+++  .+|..++.++.|      +.|++++
T Consensus       426 --------------------L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L------~~L~l~~  479 (570)
T 2z63_A          426 --------------------LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL------TFLDLSQ  479 (570)
T ss_dssp             --------------------EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC------CEEECTT
T ss_pred             --------------------EeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC------CEEECCC
Confidence                                2344566666555443 4566777788888776  577777777776      5788888


Q ss_pred             ccccccCCCchhhhhHHhHhhhCCCCcceecc-hhhhcccccccccCCceee
Q psy5270         237 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLP-AEIGNLKNLQIMLEPRWVI  287 (352)
Q Consensus       237 N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP-~~l~~l~~L~~l~~~~~~~  287 (352)
                      |++++ ..|..++.+++|++|++++|+++.+| ..++++++|+.+....++.
T Consensus       480 n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  530 (570)
T 2z63_A          480 CQLEQ-LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW  530 (570)
T ss_dssp             SCCCE-ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             Ccccc-CChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence            88876 56778888888888888888888444 4577888888775555554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.89  E-value=1.3e-24  Score=200.97  Aligned_cols=230  Identities=18%  Similarity=0.237  Sum_probs=168.8

Q ss_pred             CCCccEEEeeCCcCccc-CccccCCCCCCEEEccCCcCcccccc-cCCCCCCcEEEccCCCCCcccc--ccCCCCCCCEE
Q psy5270           1 MLYITRITLSHNKLKEI-PPGLANLVNLEILTLFNNQIETLPTS-LSSLPKLRILNLGMNRLSSLPR--GFGAFPVLEVL   76 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~~i-p~~l~~l~~L~~L~L~~N~l~~ip~~-l~~L~~L~~L~L~~N~l~~ip~--~~~~l~~L~~L   76 (352)
                      +++|++|++++|+++.+ |..|+++++|++|++++|+++.+|.. ++++++|++|++++|+++.+|.  .++++++|+.|
T Consensus        75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L  154 (353)
T 2z80_A           75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL  154 (353)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred             CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEE
Confidence            57899999999999966 56799999999999999999988775 8999999999999999999987  68999999999


Q ss_pred             EccCCC-CCCCCCCCccccCccCcEEEccCCcccc-chhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCC
Q psy5270          77 DLTYNN-LNEQSLPGNFFMLETLRALYLGDNDFEV-LPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPN  154 (352)
Q Consensus        77 ~Ls~N~-l~g~~~p~~~~~l~~L~~L~l~~N~l~~-ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~  154 (352)
                      ++++|+ +++ ..|..|+++++|++|++++|+++. .|..++++++|+.++++...         +..+. ...+..++.
T Consensus       155 ~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~---------l~~~~-~~~~~~~~~  223 (353)
T 2z80_A          155 RVGNMDTFTK-IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ---------HILLL-EIFVDVTSS  223 (353)
T ss_dssp             EEEESSSCCE-ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC---------STTHH-HHHHHHTTT
T ss_pred             ECCCCccccc-cCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc---------cccch-hhhhhhccc
Confidence            999995 655 456789999999999999999995 47899999988887665411         00000 000001122


Q ss_pred             ccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc----ccCCccCcccccccC-----CCcccCCCCCcccch
Q psy5270         155 LVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV----DTGLCKNPKIKMNRL-----SSLPRGFGAFPVLEA  225 (352)
Q Consensus       155 l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~----~~~~l~~l~l~~n~l-----~~ip~~~~~l~~L~~  225 (352)
                      +..                      +++++|.+++..+..+    ....+..++++.+.+     ..+|..++.++.|  
T Consensus       224 L~~----------------------L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L--  279 (353)
T 2z80_A          224 VEC----------------------LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGL--  279 (353)
T ss_dssp             EEE----------------------EEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTC--
T ss_pred             ccE----------------------EECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCC--
Confidence            221                      2233444444332211    112233344444444     4578777777777  


Q ss_pred             hhhhhhhhhccccccccCCCch-hhhhHHhHhhhCCCCcceecchhh
Q psy5270         226 FSFTTILDLTYNNLNEQSLPGN-FFMLETLRALYLGDNDFEVLPAEI  271 (352)
Q Consensus       226 ~~~L~~L~ls~N~l~g~~iP~~-~~~l~~L~~L~Ls~N~l~~iP~~l  271 (352)
                          +.||+++|+++  .+|.. |+.+++|++|+|++|.++.-++.+
T Consensus       280 ----~~L~Ls~N~l~--~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l  320 (353)
T 2z80_A          280 ----LELEFSRNQLK--SVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  320 (353)
T ss_dssp             ----CEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred             ----CEEECCCCCCC--ccCHHHHhcCCCCCEEEeeCCCccCcCCCc
Confidence                79999999998  47877 589999999999999999443333

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=1e-23  Score=184.17  Aligned_cols=197  Identities=19%  Similarity=0.224  Sum_probs=121.4

Q ss_pred             CcccCccccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCC-CCcccc-ccCCCCCCCEEEccC-CCCCCCCCC
Q psy5270          14 LKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNR-LSSLPR-GFGAFPVLEVLDLTY-NNLNEQSLP   89 (352)
Q Consensus        14 l~~ip~~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~-l~~ip~-~~~~l~~L~~L~Ls~-N~l~g~~~p   89 (352)
                      ++++|. +..  +|++|++++|+++.+|+ .++++++|++|++++|+ ++.+|+ .|+++++|+.|++++ |++++ ..+
T Consensus        23 l~~ip~-~~~--~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~-i~~   98 (239)
T 2xwt_C           23 IQRIPS-LPP--STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY-IDP   98 (239)
T ss_dssp             CSSCCC-CCT--TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE-ECT
T ss_pred             ccccCC-CCC--cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE-cCH
Confidence            556666 433  66666666666665544 56666666666666665 666654 466666666666666 66664 233


Q ss_pred             CccccCccCcEEEccCCccccchhhccCcccHH---HHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhh
Q psy5270          90 GNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ---IILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVR  166 (352)
Q Consensus        90 ~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~---~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~  166 (352)
                      ..|.++++|++|++++|+++.+|. ++++++|+   .++++                                       
T Consensus        99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~---------------------------------------  138 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEIT---------------------------------------  138 (239)
T ss_dssp             TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEE---------------------------------------
T ss_pred             HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECC---------------------------------------
Confidence            456666666666666666666665 55544443   22111                                       


Q ss_pred             hhhHHhHHHHHHHHhcCCc-eeecccCcc-cccCCcc-CcccccccCCCcccCCCCCcccchhhhhhhhhhccc-ccccc
Q psy5270         167 GLMEALAEELREDARNSKI-KFTSIFPFM-VDTGLCK-NPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYN-NLNEQ  242 (352)
Q Consensus       167 ~~~~~l~~~l~~~~~~~~n-~~~g~~P~~-~~~~~l~-~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N-~l~g~  242 (352)
                                       +| ++.++.+.. .....++ .+++++|+++.+|......+.|      +.|++++| ++++ 
T Consensus       139 -----------------~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L------~~L~L~~n~~l~~-  194 (239)
T 2xwt_C          139 -----------------DNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKL------DAVYLNKNKYLTV-  194 (239)
T ss_dssp             -----------------SCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEE------EEEECTTCTTCCE-
T ss_pred             -----------------CCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCC------CEEEcCCCCCccc-
Confidence                             12 222222221 1234455 6677788888887764444555      68999999 4875 


Q ss_pred             CCCchhhhh-HHhHhhhCCCCcceecchhhhcccccccc
Q psy5270         243 SLPGNFFML-ETLRALYLGDNDFEVLPAEIGNLKNLQIM  280 (352)
Q Consensus       243 ~iP~~~~~l-~~L~~L~Ls~N~l~~iP~~l~~l~~L~~l  280 (352)
                      ..|..|..+ ++|+.|++++|+++.+|..  .+++|+.|
T Consensus       195 i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L  231 (239)
T 2xwt_C          195 IDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKEL  231 (239)
T ss_dssp             ECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEE
T ss_pred             CCHHHhhccccCCcEEECCCCccccCChh--HhccCcee
Confidence            345678888 8999999999999988775  34444443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.89  E-value=1.7e-23  Score=204.14  Aligned_cols=196  Identities=22%  Similarity=0.328  Sum_probs=158.7

Q ss_pred             CccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCC
Q psy5270           3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNN   82 (352)
Q Consensus         3 ~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~   82 (352)
                      +|+.|++++|+++.||..+.  ++|++|+|++|+++.+|   ..+++|++|++++|+|+.||. +++  +|+.|++++|+
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~  131 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ  131 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred             CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence            78999999999999999875  78999999999999999   568999999999999999998 776  99999999999


Q ss_pred             CCCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccch
Q psy5270          83 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASK  162 (352)
Q Consensus        83 l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~  162 (352)
                      +++  +|.   .+++|++|++++|+++.+|.   .+++|+.|+                                     
T Consensus       132 l~~--lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~-------------------------------------  166 (571)
T 3cvr_A          132 LTM--LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLS-------------------------------------  166 (571)
T ss_dssp             CSC--CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEE-------------------------------------
T ss_pred             CCC--CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEE-------------------------------------
Confidence            987  787   68999999999999999887   334443332                                     


Q ss_pred             hhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCccc-chhhhhhhhhhccccccc
Q psy5270         163 FAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVL-EAFSFTTILDLTYNNLNE  241 (352)
Q Consensus       163 ~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L-~~~~~L~~L~ls~N~l~g  241 (352)
                                         +++|++++ +|. +. ..++.+++++|+++.+|. +..  .| .....++.|+|++|+++ 
T Consensus       167 -------------------Ls~N~L~~-lp~-l~-~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-  220 (571)
T 3cvr_A          167 -------------------VRNNQLTF-LPE-LP-ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRIT-  220 (571)
T ss_dssp             -------------------CCSSCCSC-CCC-CC-TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCC-
T ss_pred             -------------------CCCCCCCC-cch-hh-CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcce-
Confidence                               23444544 233 22 567888999999999998 554  33 11122368999999998 


Q ss_pred             cCCCchhhhhHHhHhhhCCCCcce-ecchhhhcccccc
Q psy5270         242 QSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQ  278 (352)
Q Consensus       242 ~~iP~~~~~l~~L~~L~Ls~N~l~-~iP~~l~~l~~L~  278 (352)
                       .||..++.+++|++|+|++|.|+ .+|..++++....
T Consensus       221 -~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~~  257 (571)
T 3cvr_A          221 -HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQP  257 (571)
T ss_dssp             -CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHHSC
T ss_pred             -ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhcCc
Confidence             58999999999999999999999 8999998887643

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=6.3e-24  Score=192.91  Aligned_cols=218  Identities=18%  Similarity=0.115  Sum_probs=118.7

Q ss_pred             ccEEEeeCCcCc--ccCc--cccCCCCCCEEEccCCcCc-cccccc--CCCCCCcEEEccCCCCCc-cc----cccCCCC
Q psy5270           4 ITRITLSHNKLK--EIPP--GLANLVNLEILTLFNNQIE-TLPTSL--SSLPKLRILNLGMNRLSS-LP----RGFGAFP   71 (352)
Q Consensus         4 L~~L~Ls~N~l~--~ip~--~l~~l~~L~~L~L~~N~l~-~ip~~l--~~L~~L~~L~L~~N~l~~-ip----~~~~~l~   71 (352)
                      ++.+++.++.++  .+..  .+..+++|++|++++|.++ .+|..+  +.+++|++|++++|+++. +|    ..+..++
T Consensus        66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~  145 (310)
T 4glp_A           66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP  145 (310)
T ss_dssp             CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS
T ss_pred             eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc
Confidence            455666666654  2221  1122355777777777776 455555  667777777777777763 22    2345666


Q ss_pred             CCCEEEccCCCCCCCCCCCccccCccCcEEEccCCcccc---chhh--ccCcccHHHHHHhcchhhHhhcCceEeecccc
Q psy5270          72 VLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEV---LPAE--IGNLKNLQIILETFLPDMMEKNRGHIVGISSM  146 (352)
Q Consensus        72 ~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~---ip~~--~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~  146 (352)
                      +|++|++++|++++ ..|..|+++++|++|++++|++..   ++..  ++++++|++|+++.                  
T Consensus       146 ~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~------------------  206 (310)
T 4glp_A          146 GLKVLSIAQAHSPA-FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRN------------------  206 (310)
T ss_dssp             CCCEEEEECCSSCC-CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCS------------------
T ss_pred             CCCEEEeeCCCcch-hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCC------------------
Confidence            77777777777765 455667777777777777777652   3332  24555555443332                  


Q ss_pred             ccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCc-ccCCCCCcccch
Q psy5270         147 AGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSL-PRGFGAFPVLEA  225 (352)
Q Consensus       147 ~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~i-p~~~~~l~~L~~  225 (352)
                                      +.+..+.. ....+                 ......++.+++++|+++.+ |..++.+..+  
T Consensus       207 ----------------N~l~~l~~-~~~~l-----------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~--  250 (310)
T 4glp_A          207 ----------------TGMETPTG-VCAAL-----------------AAAGVQPHSLDLSHNSLRATVNPSAPRCMWS--  250 (310)
T ss_dssp             ----------------SCCCCHHH-HHHHH-----------------HHHTCCCSSEECTTSCCCCCCCSCCSSCCCC--
T ss_pred             ----------------CCCCchHH-HHHHH-----------------HhcCCCCCEEECCCCCCCccchhhHHhccCc--
Confidence                            00000000 00000                 01223456666666766643 6655554211  


Q ss_pred             hhhhhhhhhccccccccCCCchhhhhHHhHhhhCCCCcceecchhhhcccccccccC
Q psy5270         226 FSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIMLE  282 (352)
Q Consensus       226 ~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP~~l~~l~~L~~l~~  282 (352)
                       +.|+.|++++|+++  .+|..+.  ++|++|||++|+++.+|. +..+++|+.+..
T Consensus       251 -~~L~~L~Ls~N~l~--~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L  301 (310)
T 4glp_A          251 -SALNSLNLSFAGLE--QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTL  301 (310)
T ss_dssp             -TTCCCEECCSSCCC--SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEEC
T ss_pred             -CcCCEEECCCCCCC--chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEEC
Confidence             12256777777776  3566654  567777777777765544 455566665533

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.89  E-value=4.9e-24  Score=203.61  Aligned_cols=114  Identities=32%  Similarity=0.502  Sum_probs=59.7

Q ss_pred             CccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCC
Q psy5270           3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNN   82 (352)
Q Consensus         3 ~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~   82 (352)
                      +|++|++++|+++.+| +++++++|++|++++|+++.+|..+   .+|++|++++|+++.+| +++++++|+.|++++|+
T Consensus       132 ~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~  206 (454)
T 1jl5_A          132 LLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS  206 (454)
T ss_dssp             TCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC
T ss_pred             CCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc
Confidence            4555555555555555 3555555555555555555544432   24555555555555554 35555555555555555


Q ss_pred             CCCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHh
Q psy5270          83 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILET  127 (352)
Q Consensus        83 l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~  127 (352)
                      +++  +|...   ++|++|++++|+++.+| .++++++|+.++++
T Consensus       207 l~~--l~~~~---~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~  245 (454)
T 1jl5_A          207 LKK--LPDLP---LSLESIVAGNNILEELP-ELQNLPFLTTIYAD  245 (454)
T ss_dssp             CSS--CCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECC
T ss_pred             CCc--CCCCc---CcccEEECcCCcCCccc-ccCCCCCCCEEECC
Confidence            553  34322   34555555555555555 25555555555544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.88  E-value=1.2e-22  Score=180.83  Aligned_cols=177  Identities=28%  Similarity=0.402  Sum_probs=144.9

Q ss_pred             CCccEEEeeCCcCcccCc-cccCCCCCCEEEccCCcCcccccc-cCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEc
Q psy5270           2 LYITRITLSHNKLKEIPP-GLANLVNLEILTLFNNQIETLPTS-LSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDL   78 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~-~l~~l~~L~~L~L~~N~l~~ip~~-l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~L   78 (352)
                      +++++|++++|+++.+|+ .|+++++|++|++++|+++.+|.. +..+++|++|++++|+++.+|.. |+++++|+.|++
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  116 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL  116 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence            368999999999998775 799999999999999999988764 58899999999999999988764 789999999999


Q ss_pred             cCCCCCCCCCCCccccCccCcEEEccCCccccchhh-ccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccc
Q psy5270          79 TYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVP  157 (352)
Q Consensus        79 s~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~-~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~  157 (352)
                      ++|++++ ..|..|+++++|++|++++|+++.+|.. ++++++|+.++++                              
T Consensus       117 ~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~------------------------------  165 (270)
T 2o6q_A          117 DRNQLKS-LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY------------------------------  165 (270)
T ss_dssp             CSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC------------------------------
T ss_pred             CCCccCe-eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEec------------------------------
Confidence            9999997 5566789999999999999999988764 6777777654433                              


Q ss_pred             cccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc-ccCCccCcccccccCCCcccC-CCCCcccchhhhhhhhhhc
Q psy5270         158 YCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV-DTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILDLT  235 (352)
Q Consensus       158 ~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~-~~~~l~~l~l~~n~l~~ip~~-~~~l~~L~~~~~L~~L~ls  235 (352)
                                                +|+++++.+..+ ....++.+++++|+++.+|.. +..++.|      +.|+++
T Consensus       166 --------------------------~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L------~~L~l~  213 (270)
T 2o6q_A          166 --------------------------NNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL------KMLQLQ  213 (270)
T ss_dssp             --------------------------SSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC------CEEECC
T ss_pred             --------------------------CCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC------CEEEec
Confidence                                      233333333322 345678889999999988764 6666666      799999


Q ss_pred             cccccc
Q psy5270         236 YNNLNE  241 (352)
Q Consensus       236 ~N~l~g  241 (352)
                      +|.+..
T Consensus       214 ~N~~~c  219 (270)
T 2o6q_A          214 ENPWDC  219 (270)
T ss_dssp             SSCBCC
T ss_pred             CCCeeC
Confidence            999976

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.88  E-value=1.8e-23  Score=186.56  Aligned_cols=223  Identities=22%  Similarity=0.290  Sum_probs=172.0

Q ss_pred             EEEeeCCcCcccCccccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEccCCCC
Q psy5270           6 RITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDLTYNNL   83 (352)
Q Consensus         6 ~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls~N~l   83 (352)
                      ..+.++..++++|..+.  ++|++|++++|+++.+++ .+.++++|++|++++|+++.++. .|+++++|+.|++++|++
T Consensus        11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI   88 (276)
T ss_dssp             EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence            56778888889999875  489999999999997765 89999999999999999997765 699999999999999999


Q ss_pred             CCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccch
Q psy5270          84 NEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASK  162 (352)
Q Consensus        84 ~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~  162 (352)
                      ++ ..|..|.++++|++|++++|+++.++. .++++++|+.++++.                                  
T Consensus        89 ~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~----------------------------------  133 (276)
T 2z62_A           89 QS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH----------------------------------  133 (276)
T ss_dssp             CE-ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS----------------------------------
T ss_pred             Cc-cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcC----------------------------------
Confidence            87 566889999999999999999997765 677777776654432                                  


Q ss_pred             hhhhhhhHHhHHHHHHHHhcCCceeecc-cCcc-cccCCccCcccccccCCCccc-CCCCCcccchhhhhh-hhhhcccc
Q psy5270         163 FAVRGLMEALAEELREDARNSKIKFTSI-FPFM-VDTGLCKNPKIKMNRLSSLPR-GFGAFPVLEAFSFTT-ILDLTYNN  238 (352)
Q Consensus       163 ~~l~~~~~~l~~~l~~~~~~~~n~~~g~-~P~~-~~~~~l~~l~l~~n~l~~ip~-~~~~l~~L~~~~~L~-~L~ls~N~  238 (352)
                                            |.+.+. +|.. .....++.+++++|+++.+|. .+..+..+   ..+. .|++++|.
T Consensus       134 ----------------------n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L---~~l~l~L~ls~n~  188 (276)
T 2z62_A          134 ----------------------NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM---PLLNLSLDLSLNP  188 (276)
T ss_dssp             ----------------------SCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC---TTCCEEEECCSSC
T ss_pred             ----------------------CccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhc---cccceeeecCCCc
Confidence                                  222221 1222 245677888999999997654 33333333   1112 78999999


Q ss_pred             ccccCCCchhhhhHHhHhhhCCCCcceecchh-hhcccccccccCCceeeeccccc
Q psy5270         239 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQIMLEPRWVISMGSCA  293 (352)
Q Consensus       239 l~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP~~-l~~l~~L~~l~~~~~~~~~~~~~  293 (352)
                      +++  +|.......+|+.|+|++|+++.+|.+ ++++++|+.+....+++. ..|+
T Consensus       189 l~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~-c~c~  241 (276)
T 2z62_A          189 MNF--IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD-CSCP  241 (276)
T ss_dssp             CCE--ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC-CCTT
T ss_pred             ccc--cCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc-ccCC
Confidence            986  565555556899999999999977765 688999999876666654 3343

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.88  E-value=2.3e-23  Score=205.38  Aligned_cols=99  Identities=28%  Similarity=0.421  Sum_probs=61.1

Q ss_pred             CccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCC
Q psy5270           3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNN   82 (352)
Q Consensus         3 ~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~   82 (352)
                      +++.|++++|.++.+|..+.  ++|++|++++|.++.+|.   .+++|++|+|++|+++.+|.   .+++|+.|++++|+
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~  112 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP  112 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC
T ss_pred             CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc
Confidence            35667777777776666655  566777777776666665   45666666666666666665   45566666666666


Q ss_pred             CCCCCCCCccccCccCcEEEccCCccccchhh
Q psy5270          83 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAE  114 (352)
Q Consensus        83 l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~  114 (352)
                      +++  +|.   .+++|+.|++++|+++.+|..
T Consensus       113 l~~--l~~---~l~~L~~L~L~~N~l~~lp~~  139 (622)
T 3g06_A          113 LTH--LPA---LPSGLCKLWIFGNQLTSLPVL  139 (622)
T ss_dssp             CCC--CCC---CCTTCCEEECCSSCCSCCCCC
T ss_pred             CCC--CCC---CCCCcCEEECCCCCCCcCCCC
Confidence            654  444   345555555555555555543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=2.6e-22  Score=180.57  Aligned_cols=176  Identities=26%  Similarity=0.297  Sum_probs=147.7

Q ss_pred             CCccEEEeeCCcCccc-CccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccC
Q psy5270           2 LYITRITLSHNKLKEI-PPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTY   80 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~i-p~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~   80 (352)
                      ++++.|++++|+++.+ |..|.++++|++|+|++|.++.+|.. +.+++|+.|++++|+++.+|..++.+++|+.|++++
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~  109 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF  109 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCS
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCC
Confidence            4789999999999955 56799999999999999999988765 889999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccc
Q psy5270          81 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYC  159 (352)
Q Consensus        81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~  159 (352)
                      |++++ ..|..|.++++|++|++++|+++.+|+ .+..+++|+.|+++                                
T Consensus       110 N~l~~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~--------------------------------  156 (290)
T 1p9a_G          110 NRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA--------------------------------  156 (290)
T ss_dssp             SCCCC-CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT--------------------------------
T ss_pred             CcCcc-cCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC--------------------------------
Confidence            99997 445789999999999999999998776 45667666654433                                


Q ss_pred             cchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc-ccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhcccc
Q psy5270         160 ASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV-DTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNN  238 (352)
Q Consensus       160 ~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~-~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~  238 (352)
                                              +|+++++.+..+ ....++.+++++|+++.+|..+.....|      +.+++++|.
T Consensus       157 ------------------------~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L------~~l~L~~Np  206 (290)
T 1p9a_G          157 ------------------------NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL------PFAFLHGNP  206 (290)
T ss_dssp             ------------------------TSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCC------SEEECCSCC
T ss_pred             ------------------------CCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccC------CeEEeCCCC
Confidence                                    344444444332 3567788999999999999998887777      699999999


Q ss_pred             ccc
Q psy5270         239 LNE  241 (352)
Q Consensus       239 l~g  241 (352)
                      +..
T Consensus       207 ~~C  209 (290)
T 1p9a_G          207 WLC  209 (290)
T ss_dssp             BCC
T ss_pred             ccC
Confidence            974

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.88  E-value=5.3e-23  Score=203.74  Aligned_cols=120  Identities=24%  Similarity=0.331  Sum_probs=106.1

Q ss_pred             EEEeeCCcCcccCccccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEccCCCC
Q psy5270           6 RITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDLTYNNL   83 (352)
Q Consensus         6 ~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls~N~l   83 (352)
                      ..|.++-++++||+.+.  +++++|||++|+++.+|+ +|.++++|++|+|++|+++.||+ .|+++++|++|+|++|++
T Consensus        35 ~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l  112 (635)
T 4g8a_A           35 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI  112 (635)
T ss_dssp             EEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence            45677778999998875  489999999999998864 89999999999999999999876 589999999999999999


Q ss_pred             CCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhc
Q psy5270          84 NEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETF  128 (352)
Q Consensus        84 ~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~  128 (352)
                      ++ ..|..|.++++|++|++++|+++.+|+ .|+++++|++|+++.
T Consensus       113 ~~-l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~  157 (635)
T 4g8a_A          113 QS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH  157 (635)
T ss_dssp             CE-ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS
T ss_pred             CC-CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecccc
Confidence            87 334578999999999999999998876 689999999998765

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.87  E-value=3e-23  Score=198.10  Aligned_cols=241  Identities=25%  Similarity=0.283  Sum_probs=150.8

Q ss_pred             CCCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccC
Q psy5270           1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTY   80 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~   80 (352)
                      +++|++|++++|+++.+|+.+   .+|++|++++|+++.+| .++++++|++|++++|+++.+|...   ++|+.|++++
T Consensus       152 l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~  224 (454)
T 1jl5_A          152 SSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGN  224 (454)
T ss_dssp             CTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCS
T ss_pred             CCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcC
Confidence            468999999999999888765   47999999999999887 6899999999999999999887654   5789999999


Q ss_pred             CCCCCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCcccccc
Q psy5270          81 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA  160 (352)
Q Consensus        81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~  160 (352)
                      |+++.  +|. ++.+++|++|++++|+++.+|..+   .+|+.++++...         +..+..     ..+.+.....
T Consensus       225 n~l~~--lp~-~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~N~---------l~~l~~-----~~~~L~~L~l  284 (454)
T 1jl5_A          225 NILEE--LPE-LQNLPFLTTIYADNNLLKTLPDLP---PSLEALNVRDNY---------LTDLPE-----LPQSLTFLDV  284 (454)
T ss_dssp             SCCSS--CCC-CTTCTTCCEEECCSSCCSSCCSCC---TTCCEEECCSSC---------CSCCCC-----CCTTCCEEEC
T ss_pred             CcCCc--ccc-cCCCCCCCEEECCCCcCCcccccc---cccCEEECCCCc---------ccccCc-----ccCcCCEEEC
Confidence            99874  774 888999999999999998887654   344444443310         000000     0122222222


Q ss_pred             chhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhcccccc
Q psy5270         161 SKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLN  240 (352)
Q Consensus       161 s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~  240 (352)
                      +.+.+.++.. .+.. ...+++++|+++++..   ....++.+++++|+++.+|..+   +.|      +.|++++|+++
T Consensus       285 s~N~l~~l~~-~~~~-L~~L~l~~N~l~~i~~---~~~~L~~L~Ls~N~l~~lp~~~---~~L------~~L~L~~N~l~  350 (454)
T 1jl5_A          285 SENIFSGLSE-LPPN-LYYLNASSNEIRSLCD---LPPSLEELNVSNNKLIELPALP---PRL------ERLIASFNHLA  350 (454)
T ss_dssp             CSSCCSEESC-CCTT-CCEEECCSSCCSEECC---CCTTCCEEECCSSCCSCCCCCC---TTC------CEEECCSSCCS
T ss_pred             cCCccCcccC-cCCc-CCEEECcCCcCCcccC---CcCcCCEEECCCCccccccccC---CcC------CEEECCCCccc
Confidence            2222222100 0000 0123345565555321   1135677788888888777653   334      67888888887


Q ss_pred             ccCCCchhhhhHHhHhhhCCCCccee---cchhhhcc-------------cccccccCCceee
Q psy5270         241 EQSLPGNFFMLETLRALYLGDNDFEV---LPAEIGNL-------------KNLQIMLEPRWVI  287 (352)
Q Consensus       241 g~~iP~~~~~l~~L~~L~Ls~N~l~~---iP~~l~~l-------------~~L~~l~~~~~~~  287 (352)
                      +  +|.   .+++|++|++++|+++.   +|.+++++             ++|+.++...+..
T Consensus       351 ~--lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l  408 (454)
T 1jl5_A          351 E--VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL  408 (454)
T ss_dssp             C--CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------
T ss_pred             c--ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcC
Confidence            3  676   46788888888888873   67777777             6677775554443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.87  E-value=1.6e-23  Score=190.89  Aligned_cols=217  Identities=18%  Similarity=0.138  Sum_probs=172.8

Q ss_pred             CCCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccC
Q psy5270           1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTY   80 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~   80 (352)
                      +++|++|++++|+++.+++ ++++++|++|++++|+++.+|.    .++|++|++++|+++.++..  .+++|+.|++++
T Consensus        57 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~  129 (317)
T 3o53_A           57 FTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCS--RGQGKKNIYLAN  129 (317)
T ss_dssp             CTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCSEEEEC--CCSSCEEEECCS
T ss_pred             CCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CCCcCEEECCCCccCCcCcc--ccCCCCEEECCC
Confidence            5789999999999996665 8999999999999999997764    38999999999999977654  478899999999


Q ss_pred             CCCCCCCCCCccccCccCcEEEccCCccccc-hhhc-cCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCcccc
Q psy5270          81 NNLNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEI-GNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPY  158 (352)
Q Consensus        81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~i-p~~~-~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~  158 (352)
                      |++++ ..|..++.+++|++|++++|+++.+ |..+ .++++|++++++..         .+..+   .....++.+.. 
T Consensus       130 N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N---------~l~~~---~~~~~l~~L~~-  195 (317)
T 3o53_A          130 NKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN---------FIYDV---KGQVVFAKLKT-  195 (317)
T ss_dssp             SCCCS-GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS---------CCCEE---ECCCCCTTCCE-
T ss_pred             CCCCC-ccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC---------cCccc---ccccccccCCE-
Confidence            99997 5677899999999999999999954 4555 46788888777651         11111   11112333322 


Q ss_pred             ccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhcccc
Q psy5270         159 CASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNN  238 (352)
Q Consensus       159 ~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~  238 (352)
                                           +++++|+++++.+.+.....++.+++++|+++.+|..+..++.|      +.|++++|.
T Consensus       196 ---------------------L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L------~~L~l~~N~  248 (317)
T 3o53_A          196 ---------------------LDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNL------EHFDLRGNG  248 (317)
T ss_dssp             ---------------------EECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTC------CEEECTTCC
T ss_pred             ---------------------EECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCC------CEEEccCCC
Confidence                                 34567788877776667788999999999999999988888887      799999999


Q ss_pred             ccccCCCchhhhhHHhHhhhCCCCc-ce
Q psy5270         239 LNEQSLPGNFFMLETLRALYLGDND-FE  265 (352)
Q Consensus       239 l~g~~iP~~~~~l~~L~~L~Ls~N~-l~  265 (352)
                      ++...+|..++.+++|+.+++++|. ++
T Consensus       249 ~~~~~~~~~~~~~~~L~~l~l~~~~~l~  276 (317)
T 3o53_A          249 FHCGTLRDFFSKNQRVQTVAKQTVKKLT  276 (317)
T ss_dssp             CBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             ccCcCHHHHHhccccceEEECCCchhcc
Confidence            9932789999999999999988443 44

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=1e-21  Score=172.86  Aligned_cols=175  Identities=31%  Similarity=0.461  Sum_probs=146.3

Q ss_pred             CccEEEeeCCcCcccCccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEccC
Q psy5270           3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDLTY   80 (352)
Q Consensus         3 ~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls~   80 (352)
                      ..+++|++++.++.+|..+.  +++++|+|++|.++.+ |..++++++|++|++++|+++.+++ .|.++++|+.|++++
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            46789999999999999886  5899999999999966 5579999999999999999997655 589999999999999


Q ss_pred             CCCCCCCCCCccccCccCcEEEccCCccccchhh-ccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccc
Q psy5270          81 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYC  159 (352)
Q Consensus        81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~-~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~  159 (352)
                      |++++ ..|..|..+++|++|++++|+++.+|+. ++++++|                                      
T Consensus        93 n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--------------------------------------  133 (251)
T 3m19_A           93 NQLAS-LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL--------------------------------------  133 (251)
T ss_dssp             SCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------------------------------
T ss_pred             Ccccc-cChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc--------------------------------------
Confidence            99997 4567789999999999999999977753 3443332                                      


Q ss_pred             cchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCccc-CCCCCcccchhhhhhhhhhcccc
Q psy5270         160 ASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPR-GFGAFPVLEAFSFTTILDLTYNN  238 (352)
Q Consensus       160 ~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~-~~~~l~~L~~~~~L~~L~ls~N~  238 (352)
                                                               +.+++++|+++.+|. .++.++.|      +.|+|++|+
T Consensus       134 -----------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L------~~L~L~~N~  166 (251)
T 3m19_A          134 -----------------------------------------KELRLNTNQLQSIPAGAFDKLTNL------QTLSLSTNQ  166 (251)
T ss_dssp             -----------------------------------------CEEECCSSCCCCCCTTTTTTCTTC------CEEECCSSC
T ss_pred             -----------------------------------------cEEECcCCcCCccCHHHcCcCcCC------CEEECCCCc
Confidence                                                     345567777877766 46677777      799999999


Q ss_pred             ccccCCCchhhhhHHhHhhhCCCCccee
Q psy5270         239 LNEQSLPGNFFMLETLRALYLGDNDFEV  266 (352)
Q Consensus       239 l~g~~iP~~~~~l~~L~~L~Ls~N~l~~  266 (352)
                      +++ ..|..+..+++|++|+|++|.++.
T Consensus       167 l~~-~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          167 LQS-VPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             CSC-CCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             CCc-cCHHHHhCCCCCCEEEeeCCceeC
Confidence            987 556688999999999999999983

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.86  E-value=1.2e-21  Score=193.28  Aligned_cols=105  Identities=30%  Similarity=0.329  Sum_probs=83.0

Q ss_pred             CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCC
Q psy5270           2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYN   81 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N   81 (352)
                      ++|++|++++|+|+.||.   .+++|++|+|++|+++.+|.   .+++|++|++++|+++.+|.   .+++|+.|++++|
T Consensus        61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N  131 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGN  131 (622)
T ss_dssp             TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSS
T ss_pred             CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCC
Confidence            468889999999988887   56789999999999888887   67888889999998888877   5677888888888


Q ss_pred             CCCCCCCCCccccCccCcEEEccCCccccchhhccCccc
Q psy5270          82 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKN  120 (352)
Q Consensus        82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~  120 (352)
                      ++++  +|..   +++|++|++++|+++.+|..+.+++.
T Consensus       132 ~l~~--lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~  165 (622)
T 3g06_A          132 QLTS--LPVL---PPGLQELSVSDNQLASLPALPSELCK  165 (622)
T ss_dssp             CCSC--CCCC---CTTCCEEECCSSCCSCCCCCCTTCCE
T ss_pred             CCCc--CCCC---CCCCCEEECcCCcCCCcCCccCCCCE
Confidence            8875  6664   37788888888888877665544433

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.85  E-value=1.3e-21  Score=174.24  Aligned_cols=184  Identities=26%  Similarity=0.281  Sum_probs=148.8

Q ss_pred             CCCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEc
Q psy5270           1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDL   78 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~L   78 (352)
                      +++|++|++++|.++.++ .++++++|++|++++|.++.+|+ .++.+++|++|++++|+++.+|+. |+++++|+.|++
T Consensus        62 l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  140 (272)
T 3rfs_A           62 LPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL  140 (272)
T ss_dssp             CTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence            578999999999999865 78999999999999999997755 579999999999999999987765 799999999999


Q ss_pred             cCCCCCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccc
Q psy5270          79 TYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVP  157 (352)
Q Consensus        79 s~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~  157 (352)
                      ++|++++ ..|..++++++|++|++++|+++.+|+ .++++++|+.++++                              
T Consensus       141 ~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~------------------------------  189 (272)
T 3rfs_A          141 AHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY------------------------------  189 (272)
T ss_dssp             CSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC------------------------------
T ss_pred             CCCccCc-cCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECC------------------------------
Confidence            9999997 455668899999999999999997765 46777777654333                              


Q ss_pred             cccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcc-cccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhcc
Q psy5270         158 YCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFM-VDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTY  236 (352)
Q Consensus       158 ~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~-~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~  236 (352)
                                                +|++++..|.. .....++.+++++|.+.      +.++.+      +.++++.
T Consensus       190 --------------------------~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l------~~l~~~~  231 (272)
T 3rfs_A          190 --------------------------QNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGI------RYLSEWI  231 (272)
T ss_dssp             --------------------------SSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTT------HHHHHHH
T ss_pred             --------------------------CCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHH------HHHHHHH
Confidence                                      34444444432 24556778889999876      334445      7899999


Q ss_pred             ccccccCCCchhhhhHHhH
Q psy5270         237 NNLNEQSLPGNFFMLETLR  255 (352)
Q Consensus       237 N~l~g~~iP~~~~~l~~L~  255 (352)
                      |+++| .+|.+++.+....
T Consensus       232 n~~~g-~ip~~~~~~~~~~  249 (272)
T 3rfs_A          232 NKHSG-VVRNSAGSVAPDS  249 (272)
T ss_dssp             HHTGG-GBBCTTSCBCGGG
T ss_pred             HhCCC-cccCcccccCCCC
Confidence            99999 8999988776543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=5.2e-22  Score=180.10  Aligned_cols=204  Identities=20%  Similarity=0.283  Sum_probs=162.0

Q ss_pred             eeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCCCCCCCC
Q psy5270           9 LSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSL   88 (352)
Q Consensus         9 Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~g~~~   88 (352)
                      +..+.++.+. .+..+++|++|++++|.++.+| .+..+++|++|++++|+++.+++ ++.+++|+.|++++|++++  +
T Consensus        26 l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~--~  100 (308)
T 1h6u_A           26 AGKSNVTDTV-TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN--V  100 (308)
T ss_dssp             TTCSSTTSEE-CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC--C
T ss_pred             hCCCCcCcee-cHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC--c
Confidence            3444444321 2346788999999999999887 68999999999999999999988 9999999999999999986  4


Q ss_pred             CCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhh
Q psy5270          89 PGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGL  168 (352)
Q Consensus        89 p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~  168 (352)
                      | .++.+++|++|++++|+++.+|. ++++++|+.|+++.                                        
T Consensus       101 ~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~----------------------------------------  138 (308)
T 1h6u_A          101 S-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDL----------------------------------------  138 (308)
T ss_dssp             G-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCS----------------------------------------
T ss_pred             h-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCC----------------------------------------
Confidence            4 79999999999999999998875 77777776554332                                        


Q ss_pred             hHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhccccccccCCCchh
Q psy5270         169 MEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNF  248 (352)
Q Consensus       169 ~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~  248 (352)
                                      |.+++..+ ......++.+++++|+++.+|. +..++.|      +.|++++|++++  +|. +
T Consensus       139 ----------------n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L------~~L~l~~n~l~~--~~~-l  191 (308)
T 1h6u_A          139 ----------------NQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKL------TTLKADDNKISD--ISP-L  191 (308)
T ss_dssp             ----------------SCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTC------CEEECCSSCCCC--CGG-G
T ss_pred             ----------------CccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCC------CEEECCCCccCc--Chh-h
Confidence                            23333222 2345567888999999998876 6677766      799999999986  454 8


Q ss_pred             hhhHHhHhhhCCCCcceecchhhhcccccccccCCceee
Q psy5270         249 FMLETLRALYLGDNDFEVLPAEIGNLKNLQIMLEPRWVI  287 (352)
Q Consensus       249 ~~l~~L~~L~Ls~N~l~~iP~~l~~l~~L~~l~~~~~~~  287 (352)
                      ..+++|++|+|++|+++.+|+ +.++++|+.+....+++
T Consensus       192 ~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          192 ASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             GGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEE
T ss_pred             cCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCee
Confidence            999999999999999997774 89999999885444444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.85  E-value=4.6e-21  Score=163.74  Aligned_cols=176  Identities=29%  Similarity=0.425  Sum_probs=139.2

Q ss_pred             cEEEeeCCcCcccCccccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEccCCC
Q psy5270           5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNN   82 (352)
Q Consensus         5 ~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~Ls~N~   82 (352)
                      +.++.+++.++++|.++.  ++|++|++++|+++.+|+ .++.+++|++|++++|+++.+|.. |+++++|++|++++|+
T Consensus        10 ~~v~c~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCccCCCCCCC--CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            578899999999998764  589999999999997765 578999999999999999988765 6899999999999999


Q ss_pred             CCCCCCCCccccCccCcEEEccCCccccchhh-ccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccc
Q psy5270          83 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCAS  161 (352)
Q Consensus        83 l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~-~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s  161 (352)
                      +++ ..+..|+++++|++|++++|+++.+|+. ++++++|                                        
T Consensus        88 l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L----------------------------------------  126 (208)
T 2o6s_A           88 LQS-LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQL----------------------------------------  126 (208)
T ss_dssp             CCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC----------------------------------------
T ss_pred             CCc-cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcC----------------------------------------
Confidence            986 4455678999999999999999977653 4444433                                        


Q ss_pred             hhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccC-CCCCcccchhhhhhhhhhcccccc
Q psy5270         162 KFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILDLTYNNLN  240 (352)
Q Consensus       162 ~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~-~~~l~~L~~~~~L~~L~ls~N~l~  240 (352)
                                                             +.+++++|+++.+|.. +..++.|      +.|++++|.+.
T Consensus       127 ---------------------------------------~~L~l~~N~l~~~~~~~~~~l~~L------~~L~l~~N~~~  161 (208)
T 2o6s_A          127 ---------------------------------------KDLRLYQNQLKSVPDGVFDRLTSL------QYIWLHDNPWD  161 (208)
T ss_dssp             ---------------------------------------CEEECCSSCCSCCCTTTTTTCTTC------CEEECCSCCBC
T ss_pred             ---------------------------------------CEEECCCCccceeCHHHhccCCCc------cEEEecCCCee
Confidence                                                   3345556666666554 5556666      68889888887


Q ss_pred             ccCCCchhhhhHHhHhhhCCCCcce-ecchhhhcccc
Q psy5270         241 EQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKN  276 (352)
Q Consensus       241 g~~iP~~~~~l~~L~~L~Ls~N~l~-~iP~~l~~l~~  276 (352)
                      + ..       ++|+.|+++.|+++ .+|++++++..
T Consensus       162 ~-~~-------~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          162 C-TC-------PGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             C-CT-------TTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             c-CC-------CCHHHHHHHHHhCCceeeccCccccC
Confidence            6 33       46788888888888 88888876654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.85  E-value=4.9e-22  Score=183.51  Aligned_cols=232  Identities=19%  Similarity=0.185  Sum_probs=148.8

Q ss_pred             cEEEeeCCcCcccCccccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCC-cccc-ccCCCCCCCE-EEccC
Q psy5270           5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLS-SLPR-GFGAFPVLEV-LDLTY   80 (352)
Q Consensus         5 ~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~-~ip~-~~~~l~~L~~-L~Ls~   80 (352)
                      +.++.+++++++||.++.  +++++|+|++|+++.||+ .|.++++|++|+|++|++. .+|. .|.++++++. ++++.
T Consensus        12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            568899999999999874  589999999999999986 6899999999999999986 5765 4788988765 77788


Q ss_pred             CCCCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccc
Q psy5270          81 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYC  159 (352)
Q Consensus        81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~  159 (352)
                      |++++ ..|..|.++++|++|++++|+++.+|. .+.+..++..+++.                 ....+..++......
T Consensus        90 N~l~~-l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~-----------------~~~~i~~l~~~~f~~  151 (350)
T 4ay9_X           90 NNLLY-INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ-----------------DNINIHTIERNSFVG  151 (350)
T ss_dssp             TTCCE-ECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEE-----------------SCTTCCEECTTSSTT
T ss_pred             Ccccc-cCchhhhhccccccccccccccccCCchhhcccchhhhhhhc-----------------cccccccccccchhh
Confidence            99987 457789999999999999999997765 33333333222211                 111111111100000


Q ss_pred             cchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccc-cccCCCcccC-CCCCcccchhhhhhhhhhccc
Q psy5270         160 ASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIK-MNRLSSLPRG-FGAFPVLEAFSFTTILDLTYN  237 (352)
Q Consensus       160 ~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~-~n~l~~ip~~-~~~l~~L~~~~~L~~L~ls~N  237 (352)
                      ... ..            ..+.+++|+++.+.+..+....+..+++. +|.++.||.. +..++.|      +.||+++|
T Consensus       152 ~~~-~l------------~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L------~~LdLs~N  212 (350)
T 4ay9_X          152 LSF-ES------------VILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGP------VILDISRT  212 (350)
T ss_dssp             SBS-SC------------EEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECC------SEEECTTS
T ss_pred             cch-hh------------hhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCccc------chhhcCCC
Confidence            000 00            01234556666655554444445555554 4666677753 4555555      57777777


Q ss_pred             cccccCCCc-hhhhhHHhHhhhCCCCcceecchhhhcccccccc
Q psy5270         238 NLNEQSLPG-NFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIM  280 (352)
Q Consensus       238 ~l~g~~iP~-~~~~l~~L~~L~Ls~N~l~~iP~~l~~l~~L~~l  280 (352)
                      +|+.  +|. .+.+|++|+.+++  ++++.+|+ +.++++|+.+
T Consensus       213 ~l~~--lp~~~~~~L~~L~~l~~--~~l~~lP~-l~~l~~L~~l  251 (350)
T 4ay9_X          213 RIHS--LPSYGLENLKKLRARST--YNLKKLPT-LEKLVALMEA  251 (350)
T ss_dssp             CCCC--CCSSSCTTCCEEECTTC--TTCCCCCC-TTTCCSCCEE
T ss_pred             CcCc--cChhhhccchHhhhccC--CCcCcCCC-chhCcChhhC
Confidence            7763  554 3445555444433  34556663 5666666655

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=3.5e-22  Score=181.35  Aligned_cols=197  Identities=21%  Similarity=0.201  Sum_probs=154.5

Q ss_pred             CCccEEEeeCCcCc-ccCccc--cCCCCCCEEEccCCcCc-ccc----cccCCCCCCcEEEccCCCCCccc-cccCCCCC
Q psy5270           2 LYITRITLSHNKLK-EIPPGL--ANLVNLEILTLFNNQIE-TLP----TSLSSLPKLRILNLGMNRLSSLP-RGFGAFPV   72 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~-~ip~~l--~~l~~L~~L~L~~N~l~-~ip----~~l~~L~~L~~L~L~~N~l~~ip-~~~~~l~~   72 (352)
                      ++|++|++++|.++ .+|..+  +++++|++|+|++|+++ ..|    ..+..+++|++|++++|+++.+| ..++.+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            46999999999998 778887  89999999999999998 434    35568999999999999999665 57899999


Q ss_pred             CCEEEccCCCCCC---CCCCCccccCccCcEEEccCCccccchhh----ccCcccHHHHHHhcchhhHhhcCceEeeccc
Q psy5270          73 LEVLDLTYNNLNE---QSLPGNFFMLETLRALYLGDNDFEVLPAE----IGNLKNLQIILETFLPDMMEKNRGHIVGISS  145 (352)
Q Consensus        73 L~~L~Ls~N~l~g---~~~p~~~~~l~~L~~L~l~~N~l~~ip~~----~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss  145 (352)
                      |++|++++|++.+   ...+..++.+++|++|++++|+++.+|..    ++++++|++|+                    
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~--------------------  230 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLD--------------------  230 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEE--------------------
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEE--------------------
Confidence            9999999999865   11233457899999999999999866552    34444444332                    


Q ss_pred             cccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc-cc---CCccCcccccccCCCcccCCCCCc
Q psy5270         146 MAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV-DT---GLCKNPKIKMNRLSSLPRGFGAFP  221 (352)
Q Consensus       146 ~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~-~~---~~l~~l~l~~n~l~~ip~~~~~l~  221 (352)
                                                          +++|++++..|..+ ..   +.++.+++++|+++.+|..+.  +
T Consensus       231 ------------------------------------Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~  272 (310)
T 4glp_A          231 ------------------------------------LSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--A  272 (310)
T ss_dssp             ------------------------------------CTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--S
T ss_pred             ------------------------------------CCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--C
Confidence                                                34556666544322 22   578899999999999998774  4


Q ss_pred             ccchhhhhhhhhhccccccccCCCchhhhhHHhHhhhCCCCcce
Q psy5270         222 VLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE  265 (352)
Q Consensus       222 ~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~  265 (352)
                      .|      +.|||++|++++  +|. +..+++|+.|+|++|.++
T Consensus       273 ~L------~~L~Ls~N~l~~--~~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          273 KL------RVLDLSSNRLNR--APQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CC------SCEECCSCCCCS--CCC-TTSCCCCSCEECSSTTTS
T ss_pred             CC------CEEECCCCcCCC--Cch-hhhCCCccEEECcCCCCC
Confidence            55      799999999986  455 678899999999999986

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.84  E-value=2e-21  Score=174.75  Aligned_cols=172  Identities=23%  Similarity=0.333  Sum_probs=121.5

Q ss_pred             CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCC
Q psy5270           2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYN   81 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N   81 (352)
                      ++|++|++++|.++.+|. ++.+++|++|++++|+++.+++ ++.+++|++|++++|+++.+|. ++.+++|+.|++++|
T Consensus        46 ~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n  122 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHN  122 (291)
T ss_dssp             HTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTS
T ss_pred             CcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCC
Confidence            457777777777776653 6777777777777777776665 7777777777777777777654 777777777777777


Q ss_pred             CCCCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccc
Q psy5270          82 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCAS  161 (352)
Q Consensus        82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s  161 (352)
                      ++++  + +.++.+++|++|++++|+++.+ +.+++++                                          
T Consensus       123 ~i~~--~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~------------------------------------------  156 (291)
T 1h6t_A          123 GISD--I-NGLVHLPQLESLYLGNNKITDI-TVLSRLT------------------------------------------  156 (291)
T ss_dssp             CCCC--C-GGGGGCTTCCEEECCSSCCCCC-GGGGGCT------------------------------------------
T ss_pred             cCCC--C-hhhcCCCCCCEEEccCCcCCcc-hhhccCC------------------------------------------
Confidence            7765  3 4577777777777777777755 2333333                                          


Q ss_pred             hhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhccccccc
Q psy5270         162 KFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNE  241 (352)
Q Consensus       162 ~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g  241 (352)
                                                           .++.+++++|+++.++. +..++.|      +.|++++|.+++
T Consensus       157 -------------------------------------~L~~L~L~~N~l~~~~~-l~~l~~L------~~L~L~~N~i~~  192 (291)
T 1h6t_A          157 -------------------------------------KLDTLSLEDNQISDIVP-LAGLTKL------QNLYLSKNHISD  192 (291)
T ss_dssp             -------------------------------------TCSEEECCSSCCCCCGG-GTTCTTC------CEEECCSSCCCB
T ss_pred             -------------------------------------CCCEEEccCCccccchh-hcCCCcc------CEEECCCCcCCC
Confidence                                                 23445566677776654 5566666      688889998875


Q ss_pred             cCCCchhhhhHHhHhhhCCCCcceecch
Q psy5270         242 QSLPGNFFMLETLRALYLGDNDFEVLPA  269 (352)
Q Consensus       242 ~~iP~~~~~l~~L~~L~Ls~N~l~~iP~  269 (352)
                        +| .+..+++|+.|++++|+++..|.
T Consensus       193 --l~-~l~~l~~L~~L~l~~n~i~~~~~  217 (291)
T 1h6t_A          193 --LR-ALAGLKNLDVLELFSQECLNKPI  217 (291)
T ss_dssp             --CG-GGTTCTTCSEEEEEEEEEECCCE
T ss_pred             --Ch-hhccCCCCCEEECcCCcccCCcc
Confidence              55 48888888899999888875443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=4.4e-20  Score=157.61  Aligned_cols=120  Identities=35%  Similarity=0.515  Sum_probs=103.6

Q ss_pred             CCccEEEeeCCcCcccCcc-ccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEc
Q psy5270           2 LYITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDL   78 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~L   78 (352)
                      ++|++|++++|+++.+|+. ++++++|++|++++|+++.+|+ .+..+++|++|++++|+++.+|.. |+++++|+.|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            4789999999999977765 7899999999999999998766 578999999999999999988765 799999999999


Q ss_pred             cCCCCCCCCCCCccccCccCcEEEccCCccccchhh-ccCcccHH
Q psy5270          79 TYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQ  122 (352)
Q Consensus        79 s~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~-~~nl~~L~  122 (352)
                      ++|++++ ..+..|.++++|++|++++|+++.+|.. +.++++|+
T Consensus       108 ~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~  151 (208)
T 2o6s_A          108 NTNQLQS-LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ  151 (208)
T ss_dssp             CSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             CCCcCcc-cCHhHhccCCcCCEEECCCCccceeCHHHhccCCCcc
Confidence            9999987 4455689999999999999999977664 55554443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=3e-21  Score=188.22  Aligned_cols=172  Identities=23%  Similarity=0.320  Sum_probs=140.0

Q ss_pred             CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCC
Q psy5270           2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYN   81 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N   81 (352)
                      ++|++|+|++|+|+.||   +.+++|++|+|++|+++.+|. +++  +|++|++++|+++.+|.   .+++|+.|++++|
T Consensus        80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N  150 (571)
T 3cvr_A           80 PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNN  150 (571)
T ss_dssp             TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSS
T ss_pred             CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCC
Confidence            57999999999999999   457899999999999999998 776  89999999999999998   6899999999999


Q ss_pred             CCCCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccc
Q psy5270          82 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCAS  161 (352)
Q Consensus        82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s  161 (352)
                      ++++  +|.   .+++|++|++++|+++.+|. ++  ++|+.|+++.                                 
T Consensus       151 ~l~~--lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~---------------------------------  189 (571)
T 3cvr_A          151 QLTM--LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVST---------------------------------  189 (571)
T ss_dssp             CCSC--CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCS---------------------------------
T ss_pred             ccCc--CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcC---------------------------------
Confidence            9986  787   57899999999999999988 65  5555444332                                 


Q ss_pred             hhhhhhhhHHhHHHHHHHHhcCCceeecccCcccc-----cCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhcc
Q psy5270         162 KFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD-----TGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTY  236 (352)
Q Consensus       162 ~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~-----~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~  236 (352)
                                             |+++. +|....     ...++.+++++|+++.||..++.++.|      +.|+|++
T Consensus       190 -----------------------N~L~~-lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L------~~L~L~~  239 (571)
T 3cvr_A          190 -----------------------NLLES-LPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPT------CTIILED  239 (571)
T ss_dssp             -----------------------SCCSS-CCCCC--------CCEEEECCSSCCCCCCGGGGGSCTT------EEEECCS
T ss_pred             -----------------------CCCCc-hhhHHHhhhcccccceEEecCCCcceecCHHHhcCCCC------CEEEeeC
Confidence                                   22221 111000     112367899999999999988888887      7999999


Q ss_pred             ccccccCCCchhhhhHHh
Q psy5270         237 NNLNEQSLPGNFFMLETL  254 (352)
Q Consensus       237 N~l~g~~iP~~~~~l~~L  254 (352)
                      |.+++ .+|..++.++..
T Consensus       240 N~l~~-~~p~~l~~l~~~  256 (571)
T 3cvr_A          240 NPLSS-RIRESLSQQTAQ  256 (571)
T ss_dssp             SSCCH-HHHHHHHHHHHS
T ss_pred             CcCCC-cCHHHHHHhhcC
Confidence            99999 799999888763

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.82  E-value=8.4e-23  Score=191.05  Aligned_cols=83  Identities=22%  Similarity=0.178  Sum_probs=49.7

Q ss_pred             ccCCccCcccccccC-----CCcccCCCCCcccchhhhhhhhhhccccccccC----CCchhhh--hHHhHhhhCCCCcc
Q psy5270         196 DTGLCKNPKIKMNRL-----SSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQS----LPGNFFM--LETLRALYLGDNDF  264 (352)
Q Consensus       196 ~~~~l~~l~l~~n~l-----~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~~----iP~~~~~--l~~L~~L~Ls~N~l  264 (352)
                      ....++.++++.|++     ..+|..+..++.|      +.|+|++|.+++ .    +|..+..  +++|++|+|++|.+
T Consensus       214 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L------~~L~L~~n~i~~-~~~~~l~~~l~~~~~~~L~~L~L~~n~i  286 (386)
T 2ca6_A          214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNL------RELGLNDCLLSA-RGAAAVVDAFSKLENIGLQTLRLQYNEI  286 (386)
T ss_dssp             GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC------CEEECTTCCCCH-HHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred             cCCCccEEECcCCCCCcHHHHHHHHHHccCCCc------CEEECCCCCCch-hhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence            344556666777766     3455555555555      567777777764 2    3445532  66677777777777


Q ss_pred             ee-----cchhh-hcccccccccCCce
Q psy5270         265 EV-----LPAEI-GNLKNLQIMLEPRW  285 (352)
Q Consensus       265 ~~-----iP~~l-~~l~~L~~l~~~~~  285 (352)
                      +.     +|..+ +++++|+.+....+
T Consensus       287 ~~~g~~~l~~~l~~~l~~L~~L~l~~N  313 (386)
T 2ca6_A          287 ELDAVRTLKTVIDEKMPDLLFLELNGN  313 (386)
T ss_dssp             BHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             CHHHHHHHHHHHHhcCCCceEEEccCC
Confidence            64     66666 55666766643333

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.82  E-value=3.9e-20  Score=159.54  Aligned_cols=104  Identities=28%  Similarity=0.394  Sum_probs=84.8

Q ss_pred             cEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccc--cccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEccCC
Q psy5270           5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLP--TSLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDLTYN   81 (352)
Q Consensus         5 ~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip--~~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls~N   81 (352)
                      +.+++++|.+++||+.+..  .+++|+|++|+++.++  ..+..+++|++|++++|+++.+++ .|+++++|+.|+|++|
T Consensus        14 ~~l~~s~n~l~~iP~~~~~--~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TEEECCSSCCSSCCSCCCT--TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEeEeCCCCcccCccCCCC--CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            5788899999888887754  5689999999988663  347888899999999999987765 6888889999999999


Q ss_pred             CCCCCCCCCccccCccCcEEEccCCccccc
Q psy5270          82 NLNEQSLPGNFFMLETLRALYLGDNDFEVL  111 (352)
Q Consensus        82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~~i  111 (352)
                      ++++ ..|..|.++++|++|++++|+++.+
T Consensus        92 ~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~  120 (220)
T 2v70_A           92 RLEN-VQHKMFKGLESLKTLMLRSNRITCV  120 (220)
T ss_dssp             CCCC-CCGGGGTTCSSCCEEECTTSCCCCB
T ss_pred             ccCc-cCHhHhcCCcCCCEEECCCCcCCeE
Confidence            9887 4555688888899998888888865

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.81  E-value=1.6e-20  Score=163.95  Aligned_cols=193  Identities=20%  Similarity=0.316  Sum_probs=155.0

Q ss_pred             CCccEEEeeCCcCcccCc-cccCCCCCCEEEccCCc-Cccccc-ccCCCCCCcEEEccC-CCCCcccc-ccCCCCCCCEE
Q psy5270           2 LYITRITLSHNKLKEIPP-GLANLVNLEILTLFNNQ-IETLPT-SLSSLPKLRILNLGM-NRLSSLPR-GFGAFPVLEVL   76 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~-~l~~l~~L~~L~L~~N~-l~~ip~-~l~~L~~L~~L~L~~-N~l~~ip~-~~~~l~~L~~L   76 (352)
                      ++|++|++++|+++.+|+ .|+++++|++|++++|+ ++.+|+ .+.++++|++|++++ |+++.+|+ .|+++++|+.|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            468999999999998876 68999999999999997 888865 789999999999999 99998875 58999999999


Q ss_pred             EccCCCCCCCCCCCccccCccCc---EEEccCC-ccccchh-hccCcccHH-HHHHhcchhhHhhcCceEeecccccccc
Q psy5270          77 DLTYNNLNEQSLPGNFFMLETLR---ALYLGDN-DFEVLPA-EIGNLKNLQ-IILETFLPDMMEKNRGHIVGISSMAGIV  150 (352)
Q Consensus        77 ~Ls~N~l~g~~~p~~~~~l~~L~---~L~l~~N-~l~~ip~-~~~nl~~L~-~L~l~~~p~~~~~~~g~i~~iss~~~l~  150 (352)
                      ++++|++++  +|. |+.+++|+   +|++++| +++.+|. .|.++++|+ .++++                       
T Consensus       111 ~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~-----------------------  164 (239)
T 2xwt_C          111 GIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY-----------------------  164 (239)
T ss_dssp             EEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECC-----------------------
T ss_pred             eCCCCCCcc--ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcC-----------------------
Confidence            999999986  787 88899998   9999999 9998876 577777776 54433                       


Q ss_pred             CCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCccccccc-CCCccc-CCCCC-cccchhh
Q psy5270         151 GLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNR-LSSLPR-GFGAF-PVLEAFS  227 (352)
Q Consensus       151 ~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~-l~~ip~-~~~~l-~~L~~~~  227 (352)
                                                       +|+++.+.+..+....++.+++++|+ ++.+|. .+..+ +.|    
T Consensus       165 ---------------------------------~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L----  207 (239)
T 2xwt_C          165 ---------------------------------NNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGP----  207 (239)
T ss_dssp             ---------------------------------SCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCC----
T ss_pred             ---------------------------------CCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCC----
Confidence                                             22333222222223456778899995 998864 46667 777    


Q ss_pred             hhhhhhhccccccccCCCchhhhhHHhHhhhCCCCc
Q psy5270         228 FTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDND  263 (352)
Q Consensus       228 ~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~  263 (352)
                        +.||+++|++++  +|..  .+++|+.|+++++.
T Consensus       208 --~~L~l~~N~l~~--l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          208 --SLLDVSQTSVTA--LPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             --SEEECTTCCCCC--CCCT--TCTTCSEEECTTC-
T ss_pred             --cEEECCCCcccc--CChh--HhccCceeeccCcc
Confidence              799999999985  6765  67888888888763

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.81  E-value=1e-19  Score=160.01  Aligned_cols=177  Identities=26%  Similarity=0.361  Sum_probs=144.3

Q ss_pred             CCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEccCCCCCCCCCCCccccCccCcEEEc
Q psy5270          25 VNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYL  103 (352)
Q Consensus        25 ~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L~l  103 (352)
                      .+.++++++++.++.+|..+.  ++++.|++++|+++.+++ .|+++++|+.|++++|++++ ..|..|.++++|++|++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEEC
Confidence            357899999999999998776  689999999999997655 69999999999999999998 56778999999999999


Q ss_pred             cCCccccchh-hccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhc
Q psy5270         104 GDNDFEVLPA-EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARN  182 (352)
Q Consensus       104 ~~N~l~~ip~-~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~  182 (352)
                      ++|+++.+|. .++++++|                                                             
T Consensus        91 ~~n~l~~~~~~~~~~l~~L-------------------------------------------------------------  109 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQL-------------------------------------------------------------  109 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTC-------------------------------------------------------------
T ss_pred             CCCcccccChhHhcccCCC-------------------------------------------------------------
Confidence            9999997764 34443332                                                             


Q ss_pred             CCceeecccCcccccCCccCcccccccCCCcccC-CCCCcccchhhhhhhhhhccccccccCCCchhhhhHHhHhhhCCC
Q psy5270         183 SKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGD  261 (352)
Q Consensus       183 ~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~-~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~  261 (352)
                                        +.+++++|+++.+|.. ++.++.|      +.|+|++|++++ ..|..|..+++|++|+|++
T Consensus       110 ------------------~~L~L~~N~l~~~~~~~~~~l~~L------~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~  164 (251)
T 3m19_A          110 ------------------DKLYLGGNQLKSLPSGVFDRLTKL------KELRLNTNQLQS-IPAGAFDKLTNLQTLSLST  164 (251)
T ss_dssp             ------------------CEEECCSSCCCCCCTTTTTTCTTC------CEEECCSSCCCC-CCTTTTTTCTTCCEEECCS
T ss_pred             ------------------CEEEcCCCcCCCcChhHhccCCcc------cEEECcCCcCCc-cCHHHcCcCcCCCEEECCC
Confidence                              3456677778777654 4667777      799999999986 4555799999999999999


Q ss_pred             Ccceecch-hhhcccccccccCCceeeecc
Q psy5270         262 NDFEVLPA-EIGNLKNLQIMLEPRWVISMG  290 (352)
Q Consensus       262 N~l~~iP~-~l~~l~~L~~l~~~~~~~~~~  290 (352)
                      |+++.+|+ .+.++++|+.+....++....
T Consensus       165 N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          165 NQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            99996655 689999999987666665433

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.81  E-value=1e-19  Score=157.83  Aligned_cols=109  Identities=36%  Similarity=0.529  Sum_probs=82.4

Q ss_pred             cEEEeeCCcCcccCccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEccCCC
Q psy5270           5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNN   82 (352)
Q Consensus         5 ~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~Ls~N~   82 (352)
                      +.++.+++.++.+|..+.  ++|++|+|++|+++.+ |..+..+++|++|+|++|+++.+|.. |+.+++|+.|+|++|+
T Consensus        22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~   99 (229)
T 3e6j_A           22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ   99 (229)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence            467788888888887665  6788888888888855 66778888888888888888877654 6778888888888888


Q ss_pred             CCCCCCCCccccCccCcEEEccCCccccchhhcc
Q psy5270          83 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIG  116 (352)
Q Consensus        83 l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~  116 (352)
                      +++ ..+..|..+++|++|++++|+++.+|..+.
T Consensus       100 l~~-l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~  132 (229)
T 3e6j_A          100 LTV-LPSAVFDRLVHLKELFMCCNKLTELPRGIE  132 (229)
T ss_dssp             CCC-CCTTTTTTCTTCCEEECCSSCCCSCCTTGG
T ss_pred             CCc-cChhHhCcchhhCeEeccCCcccccCcccc
Confidence            876 334456778888888888888777765543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.80  E-value=8.2e-20  Score=169.31  Aligned_cols=172  Identities=27%  Similarity=0.377  Sum_probs=133.2

Q ss_pred             cEEEeeCCcCcccCccccCCCCCCEEEccCCcCccccc-ccC-CCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEccCC
Q psy5270           5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPT-SLS-SLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDLTYN   81 (352)
Q Consensus         5 ~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~-~l~-~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls~N   81 (352)
                      +.+++++|+++.+|..+..  .+++|+|++|+++.++. .+. ++++|+.|+|++|+++.+++ .|+++++|+.|+|++|
T Consensus        21 ~~l~c~~~~l~~iP~~~~~--~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCSSCCSSCCSSCCT--TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCccCCC--CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            5789999999999988764  68999999999997755 465 89999999999999998765 5999999999999999


Q ss_pred             CCCCCCCCCccccCccCcEEEccCCccccc-hhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCcccccc
Q psy5270          82 NLNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA  160 (352)
Q Consensus        82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~~i-p~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~  160 (352)
                      ++++ ..+..|.++++|++|+|++|+++.+ |..|.++++|+                                      
T Consensus        99 ~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~--------------------------------------  139 (361)
T 2xot_A           99 HLHT-LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQ--------------------------------------  139 (361)
T ss_dssp             CCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC--------------------------------------
T ss_pred             cCCc-CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCC--------------------------------------
Confidence            9987 4556789999999999999999966 44565554443                                      


Q ss_pred             chhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCC----CCCcccchhhhhhhhhhcc
Q psy5270         161 SKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGF----GAFPVLEAFSFTTILDLTY  236 (352)
Q Consensus       161 s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~----~~l~~L~~~~~L~~L~ls~  236 (352)
                                                               .+++++|+++.+|..+    +.++.|      +.|||++
T Consensus       140 -----------------------------------------~L~L~~N~l~~l~~~~~~~~~~l~~L------~~L~L~~  172 (361)
T 2xot_A          140 -----------------------------------------KLYLSQNQISRFPVELIKDGNKLPKL------MLLDLSS  172 (361)
T ss_dssp             -----------------------------------------EEECCSSCCCSCCGGGTC----CTTC------CEEECCS
T ss_pred             -----------------------------------------EEECCCCcCCeeCHHHhcCcccCCcC------CEEECCC
Confidence                                                     3445566666666543    334455      6888888


Q ss_pred             ccccccCCCchhhhhHH--hHhhhCCCCcce
Q psy5270         237 NNLNEQSLPGNFFMLET--LRALYLGDNDFE  265 (352)
Q Consensus       237 N~l~g~~iP~~~~~l~~--L~~L~Ls~N~l~  265 (352)
                      |+|++ ..+..+..++.  ++.|+|++|.+.
T Consensus       173 N~l~~-l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          173 NKLKK-LPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             SCCCC-CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CCCCc-cCHHHhhhccHhhcceEEecCCCcc
Confidence            88875 23356777776  477888888887

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.80  E-value=3.5e-21  Score=170.68  Aligned_cols=112  Identities=23%  Similarity=0.343  Sum_probs=88.3

Q ss_pred             CccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCC
Q psy5270           3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNN   82 (352)
Q Consensus         3 ~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~   82 (352)
                      +++.+++++|.++.++ .+..+++|++|++++|.++.+| .+..+++|+.|++++|+++.+|+ ++++++|+.|++++|+
T Consensus        20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~   96 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR   96 (263)
T ss_dssp             HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC
T ss_pred             HHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc
Confidence            4556778888888777 5778888999999999888887 68888899999999999988877 8888999999999999


Q ss_pred             CCCCCCCCccccCccCcEEEccCCccccchhhccCcccHH
Q psy5270          83 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ  122 (352)
Q Consensus        83 l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~  122 (352)
                      +++  +|....  ++|++|++++|+++.+| .++++++|+
T Consensus        97 l~~--l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~  131 (263)
T 1xeu_A           97 LKN--LNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLE  131 (263)
T ss_dssp             CSC--CTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCC
T ss_pred             cCC--cCcccc--CcccEEEccCCccCCCh-hhcCccccc
Confidence            876  565333  88899999999888765 355544443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.80  E-value=4.1e-20  Score=181.91  Aligned_cols=171  Identities=23%  Similarity=0.354  Sum_probs=102.9

Q ss_pred             CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCC
Q psy5270           2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYN   81 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N   81 (352)
                      ++|+.|++++|.++.+| .++.+++|+.|+|++|+++.+|+ +..+++|+.|+|++|+++.+| .++.+++|+.|+|++|
T Consensus        43 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N  119 (605)
T 1m9s_A           43 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHN  119 (605)
T ss_dssp             TTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTS
T ss_pred             CCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCC
Confidence            34555666666665554 35556666666666666655544 556666666666666665554 4555666666666666


Q ss_pred             CCCCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccc
Q psy5270          82 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCAS  161 (352)
Q Consensus        82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s  161 (352)
                      ++++  + +.++.+++|+.|+|++|+++.+ ..++++                                           
T Consensus       120 ~l~~--l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l-------------------------------------------  152 (605)
T 1m9s_A          120 GISD--I-NGLVHLPQLESLYLGNNKITDI-TVLSRL-------------------------------------------  152 (605)
T ss_dssp             CCCC--C-GGGGGCTTCSEEECCSSCCCCC-GGGGSC-------------------------------------------
T ss_pred             CCCC--C-ccccCCCccCEEECCCCccCCc-hhhccc-------------------------------------------
Confidence            6654  2 2455566666666666655544 233332                                           


Q ss_pred             hhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhccccccc
Q psy5270         162 KFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNE  241 (352)
Q Consensus       162 ~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g  241 (352)
                                                          ..++.+++++|+++.++. +..++.|      +.|+|++|++++
T Consensus       153 ------------------------------------~~L~~L~Ls~N~l~~~~~-l~~l~~L------~~L~Ls~N~i~~  189 (605)
T 1m9s_A          153 ------------------------------------TKLDTLSLEDNQISDIVP-LAGLTKL------QNLYLSKNHISD  189 (605)
T ss_dssp             ------------------------------------TTCSEEECCSSCCCCCGG-GTTCTTC------CEEECCSSCCCB
T ss_pred             ------------------------------------CCCCEEECcCCcCCCchh-hccCCCC------CEEECcCCCCCC
Confidence                                                234455666677765544 5556555      678888888875


Q ss_pred             cCCCchhhhhHHhHhhhCCCCcceecc
Q psy5270         242 QSLPGNFFMLETLRALYLGDNDFEVLP  268 (352)
Q Consensus       242 ~~iP~~~~~l~~L~~L~Ls~N~l~~iP  268 (352)
                        +| .+..+++|+.|+|++|.++..|
T Consensus       190 --l~-~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          190 --LR-ALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             --CG-GGTTCTTCSEEECCSEEEECCC
T ss_pred             --Ch-HHccCCCCCEEEccCCcCcCCc
Confidence              43 5778888888888888887433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.80  E-value=1.2e-23  Score=205.87  Aligned_cols=189  Identities=21%  Similarity=0.188  Sum_probs=149.2

Q ss_pred             CCccEEEeeCCcCcccCccccCCCCCCEEEccCCc-------------Cc-ccccccCCCCCCcEEE-ccCCCCCcccc-
Q psy5270           2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQ-------------IE-TLPTSLSSLPKLRILN-LGMNRLSSLPR-   65 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~-------------l~-~ip~~l~~L~~L~~L~-L~~N~l~~ip~-   65 (352)
                      ++|+.|+|++|+++.||++++++++|++|++++|.             +. .+|..++.+++|+.|+ ++.|.+..++. 
T Consensus       349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l  428 (567)
T 1dce_A          349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK  428 (567)
T ss_dssp             TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhh
Confidence            57888999999999999999999999999997774             33 4567888888888888 66665443321 


Q ss_pred             -----ccCC--CCCCCEEEccCCCCCCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCc
Q psy5270          66 -----GFGA--FPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRG  138 (352)
Q Consensus        66 -----~~~~--l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g  138 (352)
                           .+..  ...|+.|+|++|++++  +|. |+++++|+.|++++|+++.+|..++++++|+                
T Consensus       429 ~l~~n~i~~l~~~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~----------------  489 (567)
T 1dce_A          429 FLLENSVLKMEYADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLE----------------  489 (567)
T ss_dssp             HHHHHHHHHHHHTTCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCC----------------
T ss_pred             hhhcccccccCccCceEEEecCCCCCC--CcC-ccccccCcEeecCcccccccchhhhcCCCCC----------------
Confidence                 0111  1258999999999986  787 9999999999999999999998887765543                


Q ss_pred             eEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCC
Q psy5270         139 HIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFG  218 (352)
Q Consensus       139 ~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~  218 (352)
                                                                                     .+++++|+++.+| .++
T Consensus       490 ---------------------------------------------------------------~L~Ls~N~l~~lp-~l~  505 (567)
T 1dce_A          490 ---------------------------------------------------------------VLQASDNALENVD-GVA  505 (567)
T ss_dssp             ---------------------------------------------------------------EEECCSSCCCCCG-GGT
T ss_pred             ---------------------------------------------------------------EEECCCCCCCCCc-ccC
Confidence                                                                           3456678888888 778


Q ss_pred             CCcccchhhhhhhhhhccccccccCC-CchhhhhHHhHhhhCCCCcceecchhhh----cccccccc
Q psy5270         219 AFPVLEAFSFTTILDLTYNNLNEQSL-PGNFFMLETLRALYLGDNDFEVLPAEIG----NLKNLQIM  280 (352)
Q Consensus       219 ~l~~L~~~~~L~~L~ls~N~l~g~~i-P~~~~~l~~L~~L~Ls~N~l~~iP~~l~----~l~~L~~l  280 (352)
                      .++.|      +.|+|++|++++ .+ |..++.+++|++|+|++|.++.+|+.+.    .+++|++|
T Consensus       506 ~l~~L------~~L~Ls~N~l~~-~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L  565 (567)
T 1dce_A          506 NLPRL------QELLLCNNRLQQ-SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  565 (567)
T ss_dssp             TCSSC------CEEECCSSCCCS-SSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCC------cEEECCCCCCCC-CCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence            88887      699999999997 44 9999999999999999999997666543    35666654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=2.7e-20  Score=171.84  Aligned_cols=218  Identities=18%  Similarity=0.151  Sum_probs=149.3

Q ss_pred             CCccEEEeeCCcCcccCc-cccCCCCCCEEEccCCcCc-cccc-ccCCCCCCcE-EEccCCCCCccc-cccCCCCCCCEE
Q psy5270           2 LYITRITLSHNKLKEIPP-GLANLVNLEILTLFNNQIE-TLPT-SLSSLPKLRI-LNLGMNRLSSLP-RGFGAFPVLEVL   76 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~-~l~~l~~L~~L~L~~N~l~-~ip~-~l~~L~~L~~-L~L~~N~l~~ip-~~~~~l~~L~~L   76 (352)
                      +++++|+|++|+|++||+ .|.++++|++|+|++|++. .+|. .|.++++++. +.++.|+++.+| ..|+++++|+.|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            478999999999999997 5899999999999999986 6765 6889998775 677889999885 568999999999


Q ss_pred             EccCCCCCCCCCCCccccCccCcEEEccC-Cccccchh-hccCcc-cHHHHHHhcchhhHhhcCceEeeccccccccCCC
Q psy5270          77 DLTYNNLNEQSLPGNFFMLETLRALYLGD-NDFEVLPA-EIGNLK-NLQIILETFLPDMMEKNRGHIVGISSMAGIVGLP  153 (352)
Q Consensus        77 ~Ls~N~l~g~~~p~~~~~l~~L~~L~l~~-N~l~~ip~-~~~nl~-~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp  153 (352)
                      ++++|++++ ..+..+....++..+++.+ |++..+|. .+..+. .++.++++.       +           .+..++
T Consensus       110 ~l~~n~l~~-~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-------N-----------~i~~i~  170 (350)
T 4ay9_X          110 LISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-------N-----------GIQEIH  170 (350)
T ss_dssp             EEEEECCSS-CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-------S-----------CCCEEC
T ss_pred             ccccccccc-CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-------c-----------cccCCC
Confidence            999999987 3455666777888899865 56777765 454443 344333332       1           111111


Q ss_pred             CccccccchhhhhhhhHHhHHHHHHHHhcC-CceeecccCcc-cccCCccCcccccccCCCcccC-CCCCcccchhhhhh
Q psy5270         154 NLVPYCASKFAVRGLMEALAEELREDARNS-KIKFTSIFPFM-VDTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTT  230 (352)
Q Consensus       154 ~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~-~n~~~g~~P~~-~~~~~l~~l~l~~n~l~~ip~~-~~~l~~L~~~~~L~  230 (352)
                      ........   +            ..+.+. .|.++.+.+.. .....++.+++++|+++.+|.. +.+++.|      +
T Consensus       171 ~~~f~~~~---L------------~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L------~  229 (350)
T 4ay9_X          171 NSAFNGTQ---L------------DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL------R  229 (350)
T ss_dssp             TTSSTTEE---E------------EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEE------E
T ss_pred             hhhccccc---h------------hHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHh------h
Confidence            11000000   0            001122 34444444433 3567889999999999999874 4445444      3


Q ss_pred             hhhhccccccccCCCchhhhhHHhHhhhCCCCcc
Q psy5270         231 ILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF  264 (352)
Q Consensus       231 ~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l  264 (352)
                      .+++  +++.  .+| .+.++++|+.++++++.-
T Consensus       230 ~l~~--~~l~--~lP-~l~~l~~L~~l~l~~~~~  258 (350)
T 4ay9_X          230 ARST--YNLK--KLP-TLEKLVALMEASLTYPSH  258 (350)
T ss_dssp             CTTC--TTCC--CCC-CTTTCCSCCEEECSCHHH
T ss_pred             hccC--CCcC--cCC-CchhCcChhhCcCCCCcc
Confidence            4443  4554  578 488999999999987653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.79  E-value=2.7e-19  Score=154.23  Aligned_cols=104  Identities=32%  Similarity=0.447  Sum_probs=80.3

Q ss_pred             cEEEeeCCcCcccCccccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCcc-ccccCCCCCCCEEEccCCC
Q psy5270           5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSL-PRGFGAFPVLEVLDLTYNN   82 (352)
Q Consensus         5 ~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~Ls~N~   82 (352)
                      +.+++++|.+++||..+.  +++++|++++|+++.+|+ .|..+++|+.|+|++|+++.+ |..|.++++|+.|+|++|+
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            467888888888887765  578888888888886654 778888888888888888865 6678888888888888888


Q ss_pred             CCCCCCCC-ccccCccCcEEEccCCccccch
Q psy5270          83 LNEQSLPG-NFFMLETLRALYLGDNDFEVLP  112 (352)
Q Consensus        83 l~g~~~p~-~~~~l~~L~~L~l~~N~l~~ip  112 (352)
                      +++  +|. .|..+++|++|+|++|+++.++
T Consensus        92 l~~--l~~~~f~~l~~L~~L~L~~N~l~~~~  120 (220)
T 2v9t_B           92 ITE--LPKSLFEGLFSLQLLLLNANKINCLR  120 (220)
T ss_dssp             CCC--CCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCc--cCHhHccCCCCCCEEECCCCCCCEeC
Confidence            875  444 4677888888888888877553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.79  E-value=1.3e-19  Score=153.49  Aligned_cols=97  Identities=16%  Similarity=0.223  Sum_probs=61.0

Q ss_pred             cCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCCCCCCCCCCccccCccCcEE
Q psy5270          22 ANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRAL  101 (352)
Q Consensus        22 ~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L  101 (352)
                      +.+++|++|++++|.++.+| .+..+++|++|++++|.++.++ .++.+++|+.|++++|++++ ..|..++.+++|++|
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTS-DKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBG-GGSCCCTTCTTCCEE
T ss_pred             hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCc-ccChhhcCCCCCCEE
Confidence            44556666777766666666 4666666777777666555444 46666667777777776665 456666666677777


Q ss_pred             EccCCccc-cchhhccCcccH
Q psy5270         102 YLGDNDFE-VLPAEIGNLKNL  121 (352)
Q Consensus       102 ~l~~N~l~-~ip~~~~nl~~L  121 (352)
                      ++++|+++ ..|..++++++|
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L  138 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKV  138 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSC
T ss_pred             EecCCccCcHhHHHHhhCCCC
Confidence            77777666 345455444433

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.79  E-value=2.6e-20  Score=187.49  Aligned_cols=79  Identities=28%  Similarity=0.317  Sum_probs=41.6

Q ss_pred             ccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCCCCCCCCCCccccCccCcEEEccCCccccchhhccCccc
Q psy5270          41 PTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKN  120 (352)
Q Consensus        41 p~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~  120 (352)
                      |..+..+++|+.|+|++|++..+|..++++++|+.|+|++|.|+  .+|..|+++++|++|+|++|+|+.+|.+|+++++
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~  294 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ  294 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred             hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence            44555555555555555555555555555555555555555555  3555555555555555555555555555544443


Q ss_pred             H
Q psy5270         121 L  121 (352)
Q Consensus       121 L  121 (352)
                      |
T Consensus       295 L  295 (727)
T 4b8c_D          295 L  295 (727)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.79  E-value=1.6e-20  Score=188.95  Aligned_cols=110  Identities=32%  Similarity=0.293  Sum_probs=91.8

Q ss_pred             cCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCCCCCCCCCCccccCc
Q psy5270          17 IPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLE   96 (352)
Q Consensus        17 ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~   96 (352)
                      .|+.+..++.|++|+|++|.+..+|..++++++|++|+|++|+|+.||..|+++++|++|+|++|+|+  .+|..|++++
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~  293 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCF  293 (727)
T ss_dssp             ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGT
T ss_pred             ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCC
Confidence            45668888899999999999988888888999999999999999999988999999999999999997  4799999999


Q ss_pred             cCcEEEccCCccccchhhccCcccHHHHHHhc
Q psy5270          97 TLRALYLGDNDFEVLPAEIGNLKNLQIILETF  128 (352)
Q Consensus        97 ~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~  128 (352)
                      +|++|+|++|.|+.+|..|+++++|+.|+++.
T Consensus       294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~  325 (727)
T 4b8c_D          294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEG  325 (727)
T ss_dssp             TCSEEECCSSCCCCCCSSTTSCTTCCCEECTT
T ss_pred             CCCEEECCCCCCCccChhhhcCCCccEEeCCC
Confidence            99999999999998888888888887766554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=2.4e-19  Score=161.14  Aligned_cols=182  Identities=21%  Similarity=0.294  Sum_probs=139.7

Q ss_pred             eeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCCCCCCCC
Q psy5270           9 LSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSL   88 (352)
Q Consensus         9 Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~g~~~   88 (352)
                      +..+.++.+. .+..+++|++|++++|.++.+|. +..+++|+.|++++|+++.+++ ++++++|+.|++++|++++  +
T Consensus        31 l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~--~  105 (291)
T 1h6t_A           31 LKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD--L  105 (291)
T ss_dssp             TTCSCTTSEE-CHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC--G
T ss_pred             hcCCCccccc-chhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC--C
Confidence            4444444321 23467789999999999988864 8889999999999999998877 8999999999999999976  4


Q ss_pred             CCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhh
Q psy5270          89 PGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGL  168 (352)
Q Consensus        89 p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~  168 (352)
                      | .++.+++|++|++++|+++.++ .++++++                                                
T Consensus       106 ~-~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~------------------------------------------------  135 (291)
T 1h6t_A          106 S-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQ------------------------------------------------  135 (291)
T ss_dssp             G-GGTTCTTCCEEECTTSCCCCCG-GGGGCTT------------------------------------------------
T ss_pred             h-hhccCCCCCEEECCCCcCCCCh-hhcCCCC------------------------------------------------
Confidence            4 4889999999999999988763 3333332                                                


Q ss_pred             hHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhccccccccCCCchh
Q psy5270         169 MEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNF  248 (352)
Q Consensus       169 ~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~  248 (352)
                                                     ++.+++++|+++.+ ..++.++.|      +.|++++|++++  ++. +
T Consensus       136 -------------------------------L~~L~l~~n~l~~~-~~l~~l~~L------~~L~L~~N~l~~--~~~-l  174 (291)
T 1h6t_A          136 -------------------------------LESLYLGNNKITDI-TVLSRLTKL------DTLSLEDNQISD--IVP-L  174 (291)
T ss_dssp             -------------------------------CCEEECCSSCCCCC-GGGGGCTTC------SEEECCSSCCCC--CGG-G
T ss_pred             -------------------------------CCEEEccCCcCCcc-hhhccCCCC------CEEEccCCcccc--chh-h
Confidence                                           23445666777665 344555555      799999999986  444 9


Q ss_pred             hhhHHhHhhhCCCCcceecchhhhcccccccccCCceee
Q psy5270         249 FMLETLRALYLGDNDFEVLPAEIGNLKNLQIMLEPRWVI  287 (352)
Q Consensus       249 ~~l~~L~~L~Ls~N~l~~iP~~l~~l~~L~~l~~~~~~~  287 (352)
                      ..+++|+.|++++|+++.+|. +.++++|+.+....+++
T Consensus       175 ~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          175 AGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             TTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEE
T ss_pred             cCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcc
Confidence            999999999999999998875 89999999885444433

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.77  E-value=1.6e-19  Score=177.70  Aligned_cols=185  Identities=21%  Similarity=0.303  Sum_probs=144.4

Q ss_pred             EEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCCCCC
Q psy5270           6 RITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNE   85 (352)
Q Consensus         6 ~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~g   85 (352)
                      .++++.+.++.+++ +..+++|+.|++++|.++.+| .+..+++|+.|+|++|+++.+|+ ++.+++|+.|+|++|.+++
T Consensus        25 ~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~  101 (605)
T 1m9s_A           25 KDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD  101 (605)
T ss_dssp             HHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC
T ss_pred             HHhccCCCcccccc-hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC
Confidence            34455666654332 456788999999999998886 58899999999999999998877 8899999999999999976


Q ss_pred             CCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhh
Q psy5270          86 QSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAV  165 (352)
Q Consensus        86 ~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l  165 (352)
                        +| .++.+++|++|+|++|+++.+| .++++++                                             
T Consensus       102 --l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~---------------------------------------------  132 (605)
T 1m9s_A          102 --LS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQ---------------------------------------------  132 (605)
T ss_dssp             --CT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTT---------------------------------------------
T ss_pred             --Ch-hhccCCCCCEEEecCCCCCCCc-cccCCCc---------------------------------------------
Confidence              44 7889999999999999988764 2333332                                             


Q ss_pred             hhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhccccccccCCC
Q psy5270         166 RGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLP  245 (352)
Q Consensus       166 ~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP  245 (352)
                                                        ++.+++++|+++.+ ..++.++.|      +.|+|++|.+++ ..|
T Consensus       133 ----------------------------------L~~L~Ls~N~l~~l-~~l~~l~~L------~~L~Ls~N~l~~-~~~  170 (605)
T 1m9s_A          133 ----------------------------------LESLYLGNNKITDI-TVLSRLTKL------DTLSLEDNQISD-IVP  170 (605)
T ss_dssp             ----------------------------------CSEEECCSSCCCCC-GGGGSCTTC------SEEECCSSCCCC-CGG
T ss_pred             ----------------------------------cCEEECCCCccCCc-hhhcccCCC------CEEECcCCcCCC-chh
Confidence                                              23445666777765 345566666      799999999997 444


Q ss_pred             chhhhhHHhHhhhCCCCcceecchhhhcccccccccCCceee
Q psy5270         246 GNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIMLEPRWVI  287 (352)
Q Consensus       246 ~~~~~l~~L~~L~Ls~N~l~~iP~~l~~l~~L~~l~~~~~~~  287 (352)
                        +..+++|+.|+|++|+++.+| .++.+++|+.|....+++
T Consensus       171 --l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          171 --LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             --GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEE
T ss_pred             --hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcC
Confidence              999999999999999999876 599999999886555544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.77  E-value=2.5e-20  Score=170.72  Aligned_cols=107  Identities=22%  Similarity=0.164  Sum_probs=49.7

Q ss_pred             CccEEEeeCCcCcccCccccCCCCCCEEEccCCcCc-c-cccccCCCCCCcEEEccCCCCC-ccccccCCCCCCCEEEcc
Q psy5270           3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIE-T-LPTSLSSLPKLRILNLGMNRLS-SLPRGFGAFPVLEVLDLT   79 (352)
Q Consensus         3 ~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~-~-ip~~l~~L~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~Ls   79 (352)
                      +++.|++++|.++..++.+.++++|++|++++|.++ . +|..+..+++|++|++++|+++ .+|..++.+++|+.|+++
T Consensus        71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~  150 (336)
T 2ast_B           71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS  150 (336)
T ss_dssp             TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred             cceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence            344444444444433333444445555555555444 2 4444444555555555555444 344444445555555555


Q ss_pred             CC-CCCCCCCCCccccCccCcEEEccCC-ccc
Q psy5270          80 YN-NLNEQSLPGNFFMLETLRALYLGDN-DFE  109 (352)
Q Consensus        80 ~N-~l~g~~~p~~~~~l~~L~~L~l~~N-~l~  109 (352)
                      +| .+++..+|..+.++++|++|++++| .++
T Consensus       151 ~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~  182 (336)
T 2ast_B          151 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFT  182 (336)
T ss_dssp             TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred             CCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC
Confidence            54 3432113444444445555555555 444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=8e-19  Score=151.25  Aligned_cols=126  Identities=31%  Similarity=0.413  Sum_probs=112.7

Q ss_pred             CCccEEEeeCCcCcccCc-cccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEc
Q psy5270           2 LYITRITLSHNKLKEIPP-GLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDL   78 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~-~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~L   78 (352)
                      ++|++|++++|+++.+|+ .|.++++|++|+|++|+++.+ |..|.++++|++|+|++|+++.+|+. |.++++|+.|+|
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            478999999999998776 689999999999999999966 78999999999999999999999876 689999999999


Q ss_pred             cCCCCCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhc
Q psy5270          79 TYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETF  128 (352)
Q Consensus        79 s~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~  128 (352)
                      ++|++++ ..|..|..+++|++|+|++|+++.+|+ .+..+++|+.++++.
T Consensus       112 ~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  161 (220)
T 2v9t_B          112 NANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ  161 (220)
T ss_dssp             CSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCCCCE-eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence            9999998 568899999999999999999997765 588888777665543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=8.6e-19  Score=151.06  Aligned_cols=126  Identities=21%  Similarity=0.311  Sum_probs=111.4

Q ss_pred             CCccEEEeeCCcCcccCc--cccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEE
Q psy5270           2 LYITRITLSHNKLKEIPP--GLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLD   77 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~--~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~   77 (352)
                      +.+++|++++|+++.+++  .|+++++|++|+|++|+++.+++ .|.++++|++|+|++|+++.+|+. |+++++|+.|+
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  111 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM  111 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence            357899999999997643  48899999999999999997755 899999999999999999987665 89999999999


Q ss_pred             ccCCCCCCCCCCCccccCccCcEEEccCCccccc-hhhccCcccHHHHHHhc
Q psy5270          78 LTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL-PAEIGNLKNLQIILETF  128 (352)
Q Consensus        78 Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~i-p~~~~nl~~L~~L~l~~  128 (352)
                      |++|++++ ..|..|.++++|++|++++|+++.+ |..|.++++|+.++++.
T Consensus       112 Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  162 (220)
T 2v70_A          112 LRSNRITC-VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA  162 (220)
T ss_dssp             CTTSCCCC-BCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCCCcCCe-ECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence            99999998 5688999999999999999999976 77898888887766554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.76  E-value=5e-21  Score=177.55  Aligned_cols=102  Identities=21%  Similarity=0.178  Sum_probs=48.5

Q ss_pred             EEeeCCcCc-ccCccccCCCCCCEEEccCCcCcccc-----cccCCCC-CCcEEEccCCCCCcc-ccccCCC-----CCC
Q psy5270           7 ITLSHNKLK-EIPPGLANLVNLEILTLFNNQIETLP-----TSLSSLP-KLRILNLGMNRLSSL-PRGFGAF-----PVL   73 (352)
Q Consensus         7 L~Ls~N~l~-~ip~~l~~l~~L~~L~L~~N~l~~ip-----~~l~~L~-~L~~L~L~~N~l~~i-p~~~~~l-----~~L   73 (352)
                      +++++|.++ .+|..+...++|++|+|++|.++.++     ..+..++ +|++|+|++|+++.. +..++.+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            445555555 34444444444555555555555332     3444454 555555555555522 3333332     555


Q ss_pred             CEEEccCCCCCCCCCCCccccC-----ccCcEEEccCCccc
Q psy5270          74 EVLDLTYNNLNEQSLPGNFFML-----ETLRALYLGDNDFE  109 (352)
Q Consensus        74 ~~L~Ls~N~l~g~~~p~~~~~l-----~~L~~L~l~~N~l~  109 (352)
                      +.|+|++|++++ ..+..++..     ++|++|++++|+++
T Consensus        83 ~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  122 (362)
T 3goz_A           83 TSLNLSGNFLSY-KSSDELVKTLAAIPFTITVLDLGWNDFS  122 (362)
T ss_dssp             CEEECCSSCGGG-SCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred             cEEECcCCcCCh-HHHHHHHHHHHhCCCCccEEECcCCcCC
Confidence            555555555544 233332222     45555555555555

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.76  E-value=4.7e-19  Score=150.00  Aligned_cols=108  Identities=19%  Similarity=0.247  Sum_probs=92.3

Q ss_pred             CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCC-ccccccCCCCCCCEEEccC
Q psy5270           2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLS-SLPRGFGAFPVLEVLDLTY   80 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~Ls~   80 (352)
                      ++|++|++++|.++.+| ++..+++|++|++++|.++.++ .+..+++|++|++++|+++ ..|..++.+++|+.|++++
T Consensus        44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~  121 (197)
T 4ezg_A           44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH  121 (197)
T ss_dssp             HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred             CCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence            57889999999999888 7888899999999999776554 6888999999999999998 4788889999999999999


Q ss_pred             CCCCCCCCCCccccCccCcEEEccCCc-cccch
Q psy5270          81 NNLNEQSLPGNFFMLETLRALYLGDND-FEVLP  112 (352)
Q Consensus        81 N~l~g~~~p~~~~~l~~L~~L~l~~N~-l~~ip  112 (352)
                      |++++ ..|..++.+++|++|++++|+ ++.+|
T Consensus       122 n~i~~-~~~~~l~~l~~L~~L~L~~n~~i~~~~  153 (197)
T 4ezg_A          122 SAHDD-SILTKINTLPKVNSIDLSYNGAITDIM  153 (197)
T ss_dssp             SBCBG-GGHHHHTTCSSCCEEECCSCTBCCCCG
T ss_pred             CccCc-HhHHHHhhCCCCCEEEccCCCCccccH
Confidence            99987 678888899999999999997 66665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.75  E-value=3e-19  Score=144.10  Aligned_cols=124  Identities=23%  Similarity=0.259  Sum_probs=109.7

Q ss_pred             CCccEEEeeCCcCc--ccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCc-cccccCCCCCCCEEEc
Q psy5270           2 LYITRITLSHNKLK--EIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSS-LPRGFGAFPVLEVLDL   78 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~--~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L   78 (352)
                      ++|+.|++++|.++  .+|+.++.+++|++|++++|.++.+ ..++.+++|++|++++|+++. +|..++.+++|+.|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            57899999999998  8999999999999999999999977 789999999999999999996 8888888999999999


Q ss_pred             cCCCCCCCCCCCccccCccCcEEEccCCccccchh----hccCcccHHHHHH
Q psy5270          79 TYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA----EIGNLKNLQIILE  126 (352)
Q Consensus        79 s~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~----~~~nl~~L~~L~l  126 (352)
                      ++|++++...|..++.+++|++|++++|+++.+|.    .++.+++|+.+++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            99999873234889999999999999999997765    5777777765543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.75  E-value=3.4e-18  Score=151.42  Aligned_cols=113  Identities=27%  Similarity=0.366  Sum_probs=99.6

Q ss_pred             CCCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccC
Q psy5270           1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTY   80 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~   80 (352)
                      +++|++|++++|+++.+| +++.+++|++|+|++|+++.+|+ +..+++|++|++++|+++.+|....  ++|+.|++++
T Consensus        40 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~  115 (263)
T 1xeu_A           40 LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDN  115 (263)
T ss_dssp             HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCS
T ss_pred             cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEccC
Confidence            468999999999999998 78999999999999999998877 9999999999999999999887544  9999999999


Q ss_pred             CCCCCCCCCCccccCccCcEEEccCCccccchhhccCcccH
Q psy5270          81 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL  121 (352)
Q Consensus        81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L  121 (352)
                      |++++  +| .++.+++|++|++++|+++.+| .++++++|
T Consensus       116 N~l~~--~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L  152 (263)
T 1xeu_A          116 NELRD--TD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKL  152 (263)
T ss_dssp             SCCSB--SG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTC
T ss_pred             CccCC--Ch-hhcCcccccEEECCCCcCCCCh-HHccCCCC
Confidence            99986  44 6999999999999999999875 45544443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=3.4e-18  Score=148.20  Aligned_cols=125  Identities=30%  Similarity=0.425  Sum_probs=111.1

Q ss_pred             CCccEEEeeCCcCccc-CccccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEc
Q psy5270           2 LYITRITLSHNKLKEI-PPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDL   78 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~i-p~~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~L   78 (352)
                      ++|++|+|++|+++.+ |..|+++++|++|+|++|+++.+|. .+..+++|++|+|++|+++.+|.. |+.+++|+.|++
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            5799999999999965 6779999999999999999998875 578999999999999999988765 789999999999


Q ss_pred             cCCCCCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhc
Q psy5270          79 TYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETF  128 (352)
Q Consensus        79 s~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~  128 (352)
                      ++|+++  .+|..+..+++|++|++++|+++.+|. .+.++++|+.++++.
T Consensus       120 s~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  168 (229)
T 3e6j_A          120 CCNKLT--ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG  168 (229)
T ss_dssp             CSSCCC--SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             cCCccc--ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence            999998  489999999999999999999998775 577788877665554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.74  E-value=5.7e-22  Score=189.39  Aligned_cols=108  Identities=25%  Similarity=0.318  Sum_probs=67.9

Q ss_pred             CCccEEEeeCCcCc-ccCccc-cCCC----CCCEEEccCCcCc-----ccccccCCCCCCcEEEccCCCCCc-ccc----
Q psy5270           2 LYITRITLSHNKLK-EIPPGL-ANLV----NLEILTLFNNQIE-----TLPTSLSSLPKLRILNLGMNRLSS-LPR----   65 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~-~ip~~l-~~l~----~L~~L~L~~N~l~-----~ip~~l~~L~~L~~L~L~~N~l~~-ip~----   65 (352)
                      ++|++||+++|.++ ..+..+ ..+.    +|++|+|++|+++     .+|..+..+++|++|++++|.++. -+.    
T Consensus        56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~  135 (461)
T 1z7x_W           56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE  135 (461)
T ss_dssp             TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred             CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH
Confidence            56777888877776 333332 2333    5777888777776     346677777777777777777762 122    


Q ss_pred             c-cCCCCCCCEEEccCCCCCCC---CCCCccccCccCcEEEccCCccc
Q psy5270          66 G-FGAFPVLEVLDLTYNNLNEQ---SLPGNFFMLETLRALYLGDNDFE  109 (352)
Q Consensus        66 ~-~~~l~~L~~L~Ls~N~l~g~---~~p~~~~~l~~L~~L~l~~N~l~  109 (352)
                      . +...++|+.|++++|++++.   .++..+..+++|++|++++|.++
T Consensus       136 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  183 (461)
T 1z7x_W          136 GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN  183 (461)
T ss_dssp             HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence            1 22345677777777777641   12444555677777777777765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.74  E-value=1.1e-18  Score=143.67  Aligned_cols=126  Identities=29%  Similarity=0.297  Sum_probs=112.7

Q ss_pred             CCccEEEeeCCcCc--ccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCc-cccccCCCCCCCEEEc
Q psy5270           2 LYITRITLSHNKLK--EIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSS-LPRGFGAFPVLEVLDL   78 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~--~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L   78 (352)
                      ++|++|++++|+++  .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|+++. +|..++++++|+.|++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            57999999999998  8999999999999999999999977 889999999999999999996 7777888999999999


Q ss_pred             cCCCCCCCCCCCccccCccCcEEEccCCccccchh----hccCcccHHHHHHhc
Q psy5270          79 TYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA----EIGNLKNLQIILETF  128 (352)
Q Consensus        79 s~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~----~~~nl~~L~~L~l~~  128 (352)
                      ++|++++...+..++.+++|++|++++|+++.+|.    .+..+++|+.++++.
T Consensus       103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~  156 (168)
T 2ell_A          103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD  156 (168)
T ss_dssp             BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred             cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence            99999872222789999999999999999998776    788888888776654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.74  E-value=6.7e-20  Score=167.83  Aligned_cols=205  Identities=18%  Similarity=0.226  Sum_probs=150.3

Q ss_pred             CCCccEEEeeCCcCc-c-cCccccCCCCCCEEEccCCcCc-ccccccCCCCCCcEEEccCC-CCC--ccccccCCCCCCC
Q psy5270           1 MLYITRITLSHNKLK-E-IPPGLANLVNLEILTLFNNQIE-TLPTSLSSLPKLRILNLGMN-RLS--SLPRGFGAFPVLE   74 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~-~-ip~~l~~l~~L~~L~L~~N~l~-~ip~~l~~L~~L~~L~L~~N-~l~--~ip~~~~~l~~L~   74 (352)
                      +++|++|++++|.++ . +|..+.++++|++|++++|.++ ..|..++.+++|++|++++| .++  .+|..++++++|+
T Consensus        92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~  171 (336)
T 2ast_B           92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  171 (336)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence            468999999999998 4 8989999999999999999998 77889999999999999999 788  4788889999999


Q ss_pred             EEEccCC-CCCCCCCCCccccCc-cCcEEEccCCc--cc--cchhhccCcccHHHHHHhcchhhHhhcCceEeecccccc
Q psy5270          75 VLDLTYN-NLNEQSLPGNFFMLE-TLRALYLGDND--FE--VLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAG  148 (352)
Q Consensus        75 ~L~Ls~N-~l~g~~~p~~~~~l~-~L~~L~l~~N~--l~--~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~  148 (352)
                      .|++++| .+++..++..+..++ +|++|++++|.  ++  .+|..++++++|+.|+++.                    
T Consensus       172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~--------------------  231 (336)
T 2ast_B          172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD--------------------  231 (336)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT--------------------
T ss_pred             EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCC--------------------
Confidence            9999999 998633688899999 99999999994  54  5777777676666554432                    


Q ss_pred             ccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCce-eeccc-CcccccCCccCcccccccCCCccc---CCCCCccc
Q psy5270         149 IVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIK-FTSIF-PFMVDTGLCKNPKIKMNRLSSLPR---GFGAFPVL  223 (352)
Q Consensus       149 l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~-~~g~~-P~~~~~~~l~~l~l~~n~l~~ip~---~~~~l~~L  223 (352)
                                                          +. +++.. +.....+.++.+++++|. ...|.   .++.++.|
T Consensus       232 ------------------------------------~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~l~~~~~L  274 (336)
T 2ast_B          232 ------------------------------------SVMLKNDCFQEFFQLNYLQHLSLSRCY-DIIPETLLELGEIPTL  274 (336)
T ss_dssp             ------------------------------------CTTCCGGGGGGGGGCTTCCEEECTTCT-TCCGGGGGGGGGCTTC
T ss_pred             ------------------------------------CCcCCHHHHHHHhCCCCCCEeeCCCCC-CCCHHHHHHHhcCCCC
Confidence                                                11 11111 111133456666777764 11122   23334444


Q ss_pred             chhhhhhhhhhccccccccCCCchhhhhH-HhHhhhCCCCcce-ecchhhhc
Q psy5270         224 EAFSFTTILDLTYNNLNEQSLPGNFFMLE-TLRALYLGDNDFE-VLPAEIGN  273 (352)
Q Consensus       224 ~~~~~L~~L~ls~N~l~g~~iP~~~~~l~-~L~~L~Ls~N~l~-~iP~~l~~  273 (352)
                            +.|++++| ++    ...+..+. .++.|++++|+++ ..|+.+++
T Consensus       275 ------~~L~l~~~-i~----~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          275 ------KTLQVFGI-VP----DGTLQLLKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             ------CEEECTTS-SC----TTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             ------CEEeccCc-cC----HHHHHHHHhhCcceEEecccCccccCCcccc
Confidence                  68888877 33    22455554 4888888888888 66766654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.74  E-value=1.9e-20  Score=175.10  Aligned_cols=234  Identities=21%  Similarity=0.174  Sum_probs=163.9

Q ss_pred             CCCccEEEeeCCcCc-c----cCccccCCCCCCEEEccCCcCc----cccccc-------CCCCCCcEEEccCCCCCc--
Q psy5270           1 MLYITRITLSHNKLK-E----IPPGLANLVNLEILTLFNNQIE----TLPTSL-------SSLPKLRILNLGMNRLSS--   62 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~-~----ip~~l~~l~~L~~L~L~~N~l~----~ip~~l-------~~L~~L~~L~L~~N~l~~--   62 (352)
                      +++|++|+|++|.++ .    ++..+.++++|++|+|++|.+.    .+|..+       ..+++|++|+|++|+++.  
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            468999999999998 4    4455889999999999997544    456554       789999999999999985  


Q ss_pred             ---cccccCCCCCCCEEEccCCCCCCCCCCCccc----cC---------ccCcEEEccCCccc--cch---hhccCcccH
Q psy5270          63 ---LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFF----ML---------ETLRALYLGDNDFE--VLP---AEIGNLKNL  121 (352)
Q Consensus        63 ---ip~~~~~l~~L~~L~Ls~N~l~g~~~p~~~~----~l---------~~L~~L~l~~N~l~--~ip---~~~~nl~~L  121 (352)
                         +|..+..+++|+.|+|++|.+++ ..+..++    .+         ++|++|++++|+++  .+|   ..+.++++|
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~-~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  189 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGP-QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL  189 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHH-HHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCH-HHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence               78889999999999999999974 3333343    34         89999999999997  566   466677777


Q ss_pred             HHHHHhcchhhHhhcCceEeecc---ccc-cccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCc-ccc
Q psy5270         122 QIILETFLPDMMEKNRGHIVGIS---SMA-GIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPF-MVD  196 (352)
Q Consensus       122 ~~L~l~~~p~~~~~~~g~i~~is---s~~-~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~-~~~  196 (352)
                      +.|+++...         +....   ... .+..++.+.....+.+.+....   .               +.+|. ...
T Consensus       190 ~~L~L~~n~---------l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g---~---------------~~l~~~l~~  242 (386)
T 2ca6_A          190 HTVKMVQNG---------IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG---S---------------SALAIALKS  242 (386)
T ss_dssp             CEEECCSSC---------CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH---H---------------HHHHHHGGG
T ss_pred             CEEECcCCC---------CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH---H---------------HHHHHHHcc
Confidence            776655411         11000   001 2334455544444444332110   0               11121 123


Q ss_pred             cCCccCcccccccCCC-----cccCC--CCCcccchhhhhhhhhhcccccccc---CCCchh-hhhHHhHhhhCCCCcce
Q psy5270         197 TGLCKNPKIKMNRLSS-----LPRGF--GAFPVLEAFSFTTILDLTYNNLNEQ---SLPGNF-FMLETLRALYLGDNDFE  265 (352)
Q Consensus       197 ~~~l~~l~l~~n~l~~-----ip~~~--~~l~~L~~~~~L~~L~ls~N~l~g~---~iP~~~-~~l~~L~~L~Ls~N~l~  265 (352)
                      .+.++.+++++|+++.     +|..+  +.++.|      +.|+|++|.+++.   .+|..+ .++++|++|++++|.++
T Consensus       243 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L------~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL------QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCC------CEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCe------EEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            4567889999999983     45554  346666      7999999999851   278888 67899999999999999


Q ss_pred             -ecc
Q psy5270         266 -VLP  268 (352)
Q Consensus       266 -~iP  268 (352)
                       ..|
T Consensus       317 ~~~~  320 (386)
T 2ca6_A          317 EEDD  320 (386)
T ss_dssp             TTSH
T ss_pred             cchh
Confidence             443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.73  E-value=3.9e-18  Score=143.73  Aligned_cols=121  Identities=26%  Similarity=0.395  Sum_probs=105.7

Q ss_pred             cEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccc--cCCCCCCcEEEccCCCCCcc-ccccCCCCCCCEEEccCC
Q psy5270           5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTS--LSSLPKLRILNLGMNRLSSL-PRGFGAFPVLEVLDLTYN   81 (352)
Q Consensus         5 ~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~--l~~L~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~Ls~N   81 (352)
                      +.+++++|++++||..+..  ++++|++++|+++.+|+.  ++.+++|++|+|++|+++.+ |..|+++++|+.|+|++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            6799999999999998765  899999999999987653  89999999999999999966 678999999999999999


Q ss_pred             CCCCCCCCCccccCccCcEEEccCCcccc-chhhccCcccHHHHHHhc
Q psy5270          82 NLNEQSLPGNFFMLETLRALYLGDNDFEV-LPAEIGNLKNLQIILETF  128 (352)
Q Consensus        82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~~-ip~~~~nl~~L~~L~l~~  128 (352)
                      ++++ ..|..|.++++|++|++++|+++. +|..++.+++|++++++.
T Consensus        89 ~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  135 (192)
T 1w8a_A           89 KIKE-ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             CCCE-ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred             cCCc-cCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence            9998 567779999999999999999995 477888888887766554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.73  E-value=6.3e-18  Score=142.58  Aligned_cols=121  Identities=32%  Similarity=0.452  Sum_probs=106.1

Q ss_pred             cEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEccCCCC
Q psy5270           5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDLTYNNL   83 (352)
Q Consensus         5 ~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls~N~l   83 (352)
                      +.+++++|+++++|.++.  ++|++|++++|+++.+|..+..+++|+.|+|++|+++.+++ .|.++++|+.|+|++|++
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            578999999999998775  58999999999999999999999999999999999998765 599999999999999999


Q ss_pred             CCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhc
Q psy5270          84 NEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETF  128 (352)
Q Consensus        84 ~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~  128 (352)
                      ++ ..|..|..+++|++|+|++|+++.+|. .|.++++|+.++++.
T Consensus        91 ~~-i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  135 (193)
T 2wfh_A           91 RC-IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA  135 (193)
T ss_dssp             CB-CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred             CE-eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCC
Confidence            97 556789999999999999999998877 577787777665543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.72  E-value=4.7e-21  Score=183.01  Aligned_cols=76  Identities=17%  Similarity=0.119  Sum_probs=35.2

Q ss_pred             CCccCcccccccCCC-----cccCCCCCcccchhhhhhhhhhccccccccCCCchhhhh-----HHhHhhhCCCCcce-e
Q psy5270         198 GLCKNPKIKMNRLSS-----LPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFML-----ETLRALYLGDNDFE-V  266 (352)
Q Consensus       198 ~~l~~l~l~~n~l~~-----ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l-----~~L~~L~Ls~N~l~-~  266 (352)
                      ..++.+++++|+++.     +|..+..++.|      +.||+++|.+++ ..+..+...     ++|++|++++|.++ .
T Consensus       256 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L------~~L~Ls~n~i~~-~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~  328 (461)
T 1z7x_W          256 SRLRTLWIWECGITAKGCGDLCRVLRAKESL------KELSLAGNELGD-EGARLLCETLLEPGCQLESLWVKSCSFTAA  328 (461)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCTTC------CEEECTTCCCHH-HHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred             CCceEEECcCCCCCHHHHHHHHHHHhhCCCc------ceEECCCCCCch-HHHHHHHHHhccCCccceeeEcCCCCCchH
Confidence            345556666666653     44443333333      455555555543 222233222     34555555555544 1


Q ss_pred             ----cchhhhcccccccc
Q psy5270         267 ----LPAEIGNLKNLQIM  280 (352)
Q Consensus       267 ----iP~~l~~l~~L~~l  280 (352)
                          +|..+.++++|+.+
T Consensus       329 ~~~~l~~~l~~~~~L~~L  346 (461)
T 1z7x_W          329 CCSHFSSVLAQNRFLLEL  346 (461)
T ss_dssp             GHHHHHHHHHHCSSCCEE
T ss_pred             HHHHHHHHHhhCCCccEE
Confidence                34444444555544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.71  E-value=2.1e-17  Score=153.02  Aligned_cols=113  Identities=31%  Similarity=0.461  Sum_probs=101.7

Q ss_pred             CCccEEEeeCCcCcccCcc-cc-CCCCCCEEEccCCcCcccc-cccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEE
Q psy5270           2 LYITRITLSHNKLKEIPPG-LA-NLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLD   77 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~~-l~-~l~~L~~L~L~~N~l~~ip-~~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~   77 (352)
                      +.++.|||++|+|+.+|+. +. ++++|++|+|++|+++.++ ..|.++++|++|+|++|+++.+|+ .|.++++|+.|+
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence            3588999999999977765 65 8999999999999999775 579999999999999999998876 589999999999


Q ss_pred             ccCCCCCCCCCCCccccCccCcEEEccCCccccchhhc
Q psy5270          78 LTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEI  115 (352)
Q Consensus        78 Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~  115 (352)
                      |++|++++ ..|..|.++++|++|+|++|+++.+|..+
T Consensus       119 L~~N~i~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~~  155 (361)
T 2xot_A          119 LYNNHIVV-VDRNAFEDMAQLQKLYLSQNQISRFPVEL  155 (361)
T ss_dssp             CCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred             CCCCcccE-ECHHHhCCcccCCEEECCCCcCCeeCHHH
Confidence            99999997 56889999999999999999999888754

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.70  E-value=9.2e-18  Score=139.38  Aligned_cols=124  Identities=23%  Similarity=0.267  Sum_probs=107.7

Q ss_pred             CCCccEEEeeCCcCcccCccccCCC-CCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCcccccc-CCCCCCCEEEc
Q psy5270           1 MLYITRITLSHNKLKEIPPGLANLV-NLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGF-GAFPVLEVLDL   78 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~~ip~~l~~l~-~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~-~~l~~L~~L~L   78 (352)
                      +++|++|++++|+++.+|. +..+. +|++|++++|.++.+ +.++.+++|++|++++|+++.+|+.+ +.+++|+.|++
T Consensus        18 ~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   95 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   95 (176)
T ss_dssp             TTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             cCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence            3578999999999998865 55555 999999999999987 68999999999999999999998765 89999999999


Q ss_pred             cCCCCCCCCCCC--ccccCccCcEEEccCCccccchhh----ccCcccHHHHHHhc
Q psy5270          79 TYNNLNEQSLPG--NFFMLETLRALYLGDNDFEVLPAE----IGNLKNLQIILETF  128 (352)
Q Consensus        79 s~N~l~g~~~p~--~~~~l~~L~~L~l~~N~l~~ip~~----~~nl~~L~~L~l~~  128 (352)
                      ++|+++.  +|.  .++.+++|++|++++|.++.+|..    ++.+++|+.++++.
T Consensus        96 ~~N~i~~--~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~  149 (176)
T 1a9n_A           96 TNNSLVE--LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK  149 (176)
T ss_dssp             CSCCCCC--GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred             CCCcCCc--chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCc
Confidence            9999964  787  899999999999999999988875    77777777666554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=7.5e-17  Score=135.85  Aligned_cols=106  Identities=28%  Similarity=0.458  Sum_probs=98.5

Q ss_pred             CccEEEeeCCcCcccCcc--ccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEc
Q psy5270           3 YITRITLSHNKLKEIPPG--LANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDL   78 (352)
Q Consensus         3 ~L~~L~Ls~N~l~~ip~~--l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~L   78 (352)
                      +|++|++++|+++.+|+.  ++++++|++|+|++|+++.+ |..|.++++|++|+|++|+++.+++ .|+++++|+.|+|
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            789999999999988764  89999999999999999966 7899999999999999999997765 4899999999999


Q ss_pred             cCCCCCCCCCCCccccCccCcEEEccCCccc
Q psy5270          79 TYNNLNEQSLPGNFFMLETLRALYLGDNDFE  109 (352)
Q Consensus        79 s~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~  109 (352)
                      ++|++++ ..|..|+.+++|++|++++|.++
T Consensus       110 ~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A          110 YDNQISC-VMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CSSCCCE-ECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCCcCCe-eCHHHhhcCCCCCEEEeCCCCcc
Confidence            9999998 67999999999999999999998

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=6.2e-17  Score=158.30  Aligned_cols=111  Identities=25%  Similarity=0.300  Sum_probs=104.2

Q ss_pred             CccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCC
Q psy5270           3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNN   82 (352)
Q Consensus         3 ~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~   82 (352)
                      .|+.|+|++|.|+.+|. ++++++|++|+|++|+++.+|..++++++|+.|+|++|+++.+| .++++++|+.|+|++|+
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~  519 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR  519 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence            57899999999999997 99999999999999999999999999999999999999999999 89999999999999999


Q ss_pred             CCCCCC-CCccccCccCcEEEccCCccccchhhcc
Q psy5270          83 LNEQSL-PGNFFMLETLRALYLGDNDFEVLPAEIG  116 (352)
Q Consensus        83 l~g~~~-p~~~~~l~~L~~L~l~~N~l~~ip~~~~  116 (352)
                      +++ .. |..|+.+++|+.|++++|+++.+|+.+.
T Consensus       520 l~~-~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~  553 (567)
T 1dce_A          520 LQQ-SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE  553 (567)
T ss_dssp             CCS-SSTTGGGGGCTTCCEEECTTSGGGGSSSCTT
T ss_pred             CCC-CCCcHHHhcCCCCCEEEecCCcCCCCccHHH
Confidence            998 44 9999999999999999999998776544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.68  E-value=2.8e-16  Score=130.18  Aligned_cols=110  Identities=32%  Similarity=0.504  Sum_probs=98.0

Q ss_pred             cEEEeeCCcCcccCccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEccCCC
Q psy5270           5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNN   82 (352)
Q Consensus         5 ~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~Ls~N~   82 (352)
                      +.+++++|+++++|..+.  ++|++|+|++|+++.+ |..|+++++|++|+|++|+|+.+|.. |+++++|+.|+|++|+
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            679999999999999886  7999999999999976 66899999999999999999999886 6899999999999999


Q ss_pred             CCCCCCCC-ccccCccCcEEEccCCccccchhhccCc
Q psy5270          83 LNEQSLPG-NFFMLETLRALYLGDNDFEVLPAEIGNL  118 (352)
Q Consensus        83 l~g~~~p~-~~~~l~~L~~L~l~~N~l~~ip~~~~nl  118 (352)
                      +++  +|. .|..+++|++|++++|.++..|..+..+
T Consensus        93 l~~--l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l  127 (174)
T 2r9u_A           93 LKS--IPRGAFDNLKSLTHIYLYNNPWDCECRDIMYL  127 (174)
T ss_dssp             CCC--CCTTTTTTCTTCSEEECCSSCBCTTBGGGHHH
T ss_pred             cce--eCHHHhccccCCCEEEeCCCCcccccccHHHH
Confidence            996  555 5999999999999999999766555433

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.67  E-value=3.1e-16  Score=132.18  Aligned_cols=107  Identities=32%  Similarity=0.462  Sum_probs=97.9

Q ss_pred             CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccc-cccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEcc
Q psy5270           2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDLT   79 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip-~~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls   79 (352)
                      ++|++|++++|+|+.+|..|.++++|++|+|++|+++.++ ..|.++++|+.|+|++|+++.+|+ .|+++++|+.|+|+
T Consensus        31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence            4789999999999999999999999999999999999775 579999999999999999998765 59999999999999


Q ss_pred             CCCCCCCCCCCccccCccCcEEEccCCccc
Q psy5270          80 YNNLNEQSLPGNFFMLETLRALYLGDNDFE  109 (352)
Q Consensus        80 ~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~  109 (352)
                      +|++++ ..+..|..+++|++|++++|.+.
T Consensus       111 ~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          111 GNDISV-VPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SSCCCB-CCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCe-eChhhhhcCccccEEEeCCCCee
Confidence            999986 33446889999999999999997

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.67  E-value=2.8e-18  Score=158.94  Aligned_cols=203  Identities=25%  Similarity=0.254  Sum_probs=139.2

Q ss_pred             CCccEEEeeCCcCcccC-----ccccCCC-CCCEEEccCCcCccc-ccccCCC-----CCCcEEEccCCCCCccc-cc--
Q psy5270           2 LYITRITLSHNKLKEIP-----PGLANLV-NLEILTLFNNQIETL-PTSLSSL-----PKLRILNLGMNRLSSLP-RG--   66 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip-----~~l~~l~-~L~~L~L~~N~l~~i-p~~l~~L-----~~L~~L~L~~N~l~~ip-~~--   66 (352)
                      ++|++|||++|.++.++     ..+.+++ +|++|+|++|.++.. +..+..+     ++|++|++++|+++..+ ..  
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            35899999999998665     5677888 899999999999843 5566664     88999999999998543 32  


Q ss_pred             --cCCC-CCCCEEEccCCCCCCCCCCCcccc-----CccCcEEEccCCccccc-hhhccCcccHHHHHHhcchhhHhhcC
Q psy5270          67 --FGAF-PVLEVLDLTYNNLNEQSLPGNFFM-----LETLRALYLGDNDFEVL-PAEIGNLKNLQIILETFLPDMMEKNR  137 (352)
Q Consensus        67 --~~~l-~~L~~L~Ls~N~l~g~~~p~~~~~-----l~~L~~L~l~~N~l~~i-p~~~~nl~~L~~L~l~~~p~~~~~~~  137 (352)
                        +..+ ++|+.|++++|++++ ..+..++.     .++|++|++++|+++.. +..+..                    
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~--------------------  160 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSS-KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ--------------------  160 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGG-SCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH--------------------
T ss_pred             HHHHhCCCCccEEECcCCcCCc-HHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH--------------------
Confidence              4445 789999999999976 44444433     36899999999988732 111110                    


Q ss_pred             ceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccccc-CCccCcccccccCCCc-cc
Q psy5270         138 GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT-GLCKNPKIKMNRLSSL-PR  215 (352)
Q Consensus       138 g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~-~~l~~l~l~~n~l~~i-p~  215 (352)
                                                           .+                  ... ..++.+++++|+++.. +.
T Consensus       161 -------------------------------------~l------------------~~~~~~L~~L~Ls~n~l~~~~~~  185 (362)
T 3goz_A          161 -------------------------------------IL------------------AAIPANVNSLNLRGNNLASKNCA  185 (362)
T ss_dssp             -------------------------------------HH------------------HTSCTTCCEEECTTSCGGGSCHH
T ss_pred             -------------------------------------HH------------------hcCCccccEeeecCCCCchhhHH
Confidence                                                 00                  001 1457889999999843 32


Q ss_pred             CCCCCcccchh-hhhhhhhhcccccccc---CCCchhhhh-HHhHhhhCCCCcceecc-----hhhhcccccccccC
Q psy5270         216 GFGAFPVLEAF-SFTTILDLTYNNLNEQ---SLPGNFFML-ETLRALYLGDNDFEVLP-----AEIGNLKNLQIMLE  282 (352)
Q Consensus       216 ~~~~l~~L~~~-~~L~~L~ls~N~l~g~---~iP~~~~~l-~~L~~L~Ls~N~l~~iP-----~~l~~l~~L~~l~~  282 (352)
                      .++..  +..+ ..|+.|||++|.+++.   .+|..+..+ ++|++|||++|+++..+     ..+..+++|+.+..
T Consensus       186 ~l~~~--l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L  260 (362)
T 3goz_A          186 ELAKF--LASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL  260 (362)
T ss_dssp             HHHHH--HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEE
T ss_pred             HHHHH--HHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEe
Confidence            22211  1112 2447999999999751   145566664 58999999999998433     23466788888743

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.67  E-value=3.3e-16  Score=129.27  Aligned_cols=107  Identities=31%  Similarity=0.497  Sum_probs=95.7

Q ss_pred             ccEEEeeCCcCcccCccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEccCC
Q psy5270           4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYN   81 (352)
Q Consensus         4 L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~Ls~N   81 (352)
                      .+.+|+++|.++++|..+.  ++|++|+|++|+++.+ |..|.++++|++|+|++|+++.+|+. |+++++|++|+|++|
T Consensus        11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            5789999999999999875  7999999999999977 66899999999999999999998876 689999999999999


Q ss_pred             CCCCCCCCCccccCccCcEEEccCCccccchh
Q psy5270          82 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPA  113 (352)
Q Consensus        82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~  113 (352)
                      ++++ ..|..|.++++|++|+|++|.++..++
T Consensus        89 ~l~~-~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           89 QLKS-IPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CCCC-CCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             ccCE-eCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            9997 445569999999999999999985443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.66  E-value=1.2e-16  Score=131.37  Aligned_cols=112  Identities=26%  Similarity=0.291  Sum_probs=102.0

Q ss_pred             CCCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcc-cccccCCCCCCcEEEccCCCCCccc--cccCCCCCCCEEE
Q psy5270           1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIET-LPTSLSSLPKLRILNLGMNRLSSLP--RGFGAFPVLEVLD   77 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~-ip~~l~~L~~L~~L~L~~N~l~~ip--~~~~~l~~L~~L~   77 (352)
                      +++|++|++++|.++.+ +.++.+++|++|++++|+++. +|..+..+++|++|++++|+++.+|  ..++.+++|+.|+
T Consensus        48 l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~  126 (168)
T 2ell_A           48 FVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD  126 (168)
T ss_dssp             GGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEE
T ss_pred             CCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEE
Confidence            46899999999999977 889999999999999999995 7888888999999999999999887  6899999999999


Q ss_pred             ccCCCCCCCCCCC----ccccCccCcEEEccCCccccchhhc
Q psy5270          78 LTYNNLNEQSLPG----NFFMLETLRALYLGDNDFEVLPAEI  115 (352)
Q Consensus        78 Ls~N~l~g~~~p~----~~~~l~~L~~L~l~~N~l~~ip~~~  115 (352)
                      +++|.+++  +|.    .+..+++|++|++++|.+.++|.+.
T Consensus       127 l~~N~l~~--~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  166 (168)
T 2ell_A          127 LFNCEVTN--LNDYRESVFKLLPQLTYLDGYDREDQEAPDSD  166 (168)
T ss_dssp             CCSSGGGT--STTHHHHHHTTCSSCCEETTEETTSCBCCSSS
T ss_pred             eeCCcCcc--hHHHHHHHHHhCccCcEecCCCCChhhccccc
Confidence            99999986  565    8899999999999999999888653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.65  E-value=1.5e-16  Score=128.25  Aligned_cols=87  Identities=21%  Similarity=0.174  Sum_probs=74.8

Q ss_pred             CCCCCEEEccCCcCc--ccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCCCCCCCCCCccccCccCcEE
Q psy5270          24 LVNLEILTLFNNQIE--TLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRAL  101 (352)
Q Consensus        24 l~~L~~L~L~~N~l~--~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L  101 (352)
                      .++|++|++++|.++  .+|..++.+++|++|++++|+++.+ ..++++++|++|++++|.+++ .+|..++.+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSG-GLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCS-CTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccc-hHHHHhhhCCCCCEE
Confidence            467899999999998  7888888999999999999999877 678889999999999999987 578888888899999


Q ss_pred             EccCCccccch
Q psy5270         102 YLGDNDFEVLP  112 (352)
Q Consensus       102 ~l~~N~l~~ip  112 (352)
                      ++++|+++.+|
T Consensus        94 ~ls~N~i~~~~  104 (149)
T 2je0_A           94 NLSGNKIKDLS  104 (149)
T ss_dssp             ECTTSCCCSHH
T ss_pred             ECCCCcCCChH
Confidence            99999888654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.65  E-value=1.1e-15  Score=126.91  Aligned_cols=118  Identities=31%  Similarity=0.471  Sum_probs=54.6

Q ss_pred             EEEeeCCcCcccCccccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEccCCCC
Q psy5270           6 RITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNNL   83 (352)
Q Consensus         6 ~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~Ls~N~l   83 (352)
                      .+++++|+++++|..+.  ++|++|++++|+++.+|+ .++.+++|++|++++|+++.+|+. |+++++|+.|++++|++
T Consensus        11 ~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l   88 (177)
T 2o6r_A           11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL   88 (177)
T ss_dssp             EEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence            44455555554444332  345555555555544332 334455555555555555544432 34455555555555555


Q ss_pred             CCCCCCCccccCccCcEEEccCCccccchhh-ccCcccHHHHHH
Q psy5270          84 NEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQIILE  126 (352)
Q Consensus        84 ~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~-~~nl~~L~~L~l  126 (352)
                      ++ ..+..++.+++|++|++++|+++.+|.. +.++++|+.+++
T Consensus        89 ~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  131 (177)
T 2o6r_A           89 QS-LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWL  131 (177)
T ss_dssp             CC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             cc-cCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEe
Confidence            43 2223344455555555555555544432 234444444433

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.64  E-value=4.4e-16  Score=129.20  Aligned_cols=110  Identities=37%  Similarity=0.550  Sum_probs=96.6

Q ss_pred             CCccEEEeeCCcCcccCcc-ccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEc
Q psy5270           2 LYITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDL   78 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~L   78 (352)
                      ++|++|++++|+++.+|+. ++++++|++|++++|+++.+|+ .++.+++|+.|++++|+++.+|+. ++++++|+.|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            5789999999999987764 7899999999999999998765 579999999999999999988765 789999999999


Q ss_pred             cCCCCCCCCCCCccccCccCcEEEccCCccccch
Q psy5270          79 TYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLP  112 (352)
Q Consensus        79 s~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip  112 (352)
                      ++|++++ ..+..+..+++|++|++++|.++..+
T Consensus       108 ~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A          108 DTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             cCCcceE-eCHHHhcCCcccCEEEecCCCeeccC
Confidence            9999986 33445688999999999999998433

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.58  E-value=1.3e-15  Score=126.29  Aligned_cols=106  Identities=23%  Similarity=0.295  Sum_probs=97.5

Q ss_pred             CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCccccccc-CCCCCCcEEEccCCCCCcccc--ccCCCCCCCEEEc
Q psy5270           2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSL-SSLPKLRILNLGMNRLSSLPR--GFGAFPVLEVLDL   78 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l-~~L~~L~~L~L~~N~l~~ip~--~~~~l~~L~~L~L   78 (352)
                      ++|++||+++|.++.+ +.++++++|++|++++|+++.+|+.+ +.+++|++|++++|+++.+|.  .++.+++|+.|++
T Consensus        42 ~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l  120 (176)
T 1a9n_A           42 DQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI  120 (176)
T ss_dssp             TCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEEC
T ss_pred             CCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEe
Confidence            4899999999999988 78999999999999999999887655 899999999999999999997  7999999999999


Q ss_pred             cCCCCCCCCCCCc----cccCccCcEEEccCCcccc
Q psy5270          79 TYNNLNEQSLPGN----FFMLETLRALYLGDNDFEV  110 (352)
Q Consensus        79 s~N~l~g~~~p~~----~~~l~~L~~L~l~~N~l~~  110 (352)
                      ++|.++.  +|..    ++.+++|++||++.|...+
T Consensus       121 ~~N~i~~--~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          121 LRNPVTN--KKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CSSGGGG--STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             cCCCCCC--cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            9999975  7875    8999999999999999874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.58  E-value=3.6e-18  Score=168.08  Aligned_cols=123  Identities=19%  Similarity=0.159  Sum_probs=68.1

Q ss_pred             CCccEEEeeCCcCc-c----cCccccCCCCCCEEEccCCcCc-----ccccccCCCCCCcEEEccCCCCCccccccCCCC
Q psy5270           2 LYITRITLSHNKLK-E----IPPGLANLVNLEILTLFNNQIE-----TLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFP   71 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~-~----ip~~l~~l~~L~~L~L~~N~l~-----~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~   71 (352)
                      ++|++|+|++|.++ .    ++..+.++++|++|++++|.++     .++..+.++++|+.|++++|.++.+|..+++++
T Consensus       164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~  243 (592)
T 3ogk_B          164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAA  243 (592)
T ss_dssp             TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCT
T ss_pred             CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhh
Confidence            45666666666654 2    2223344556666666666554     223334456666666666665554444444444


Q ss_pred             CCCEEEc---------------------------cCCCCCCCCCCCccccCccCcEEEccCCccc--cchhhccCcccHH
Q psy5270          72 VLEVLDL---------------------------TYNNLNEQSLPGNFFMLETLRALYLGDNDFE--VLPAEIGNLKNLQ  122 (352)
Q Consensus        72 ~L~~L~L---------------------------s~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~--~ip~~~~nl~~L~  122 (352)
                      +|+.|++                           +++.. + .+|..+..+++|++|++++|.++  .++..+.++++|+
T Consensus       244 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~  321 (592)
T 3ogk_B          244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-N-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE  321 (592)
T ss_dssp             TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-T-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred             HHHhhcccccccccchHHHHHHhhccccccccCccccch-h-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence            4444444                           44322 2 45666777778888888888876  3334456666666


Q ss_pred             HHHH
Q psy5270         123 IILE  126 (352)
Q Consensus       123 ~L~l  126 (352)
                      .|++
T Consensus       322 ~L~L  325 (592)
T 3ogk_B          322 VLET  325 (592)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            5544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.54  E-value=8.9e-18  Score=142.19  Aligned_cols=122  Identities=30%  Similarity=0.397  Sum_probs=91.8

Q ss_pred             CccEEEeeCCcCc-ccCc------cccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCE
Q psy5270           3 YITRITLSHNKLK-EIPP------GLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEV   75 (352)
Q Consensus         3 ~L~~L~Ls~N~l~-~ip~------~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~   75 (352)
                      .++.++++.+.++ .+|+      .++++++|++|++++|+++.+| .+..+++|+.|++++|+++.+|..++.+++|+.
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~   97 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEE   97 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSE
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCE
Confidence            4455555555555 4444      7888888888888888888777 778888888888888888888877777788888


Q ss_pred             EEccCCCCCCCCCCCccccCccCcEEEccCCccccchh--hccCcccHHHHHHhc
Q psy5270          76 LDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA--EIGNLKNLQIILETF  128 (352)
Q Consensus        76 L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~--~~~nl~~L~~L~l~~  128 (352)
                      |++++|++++  +| .++.+++|++|++++|+++.+|.  .++++++|++++++.
T Consensus        98 L~L~~N~l~~--l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~  149 (198)
T 1ds9_A           98 LWISYNQIAS--LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG  149 (198)
T ss_dssp             EEEEEEECCC--HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECS
T ss_pred             EECcCCcCCc--CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecC
Confidence            8888888875  45 57778888888888888886654  677777777776655

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.52  E-value=1.7e-17  Score=140.47  Aligned_cols=104  Identities=26%  Similarity=0.355  Sum_probs=67.5

Q ss_pred             CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCC
Q psy5270           2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYN   81 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N   81 (352)
                      ++|++|++++|+++.+| .++++++|++|++++|.++.+|..+..+++|+.|++++|+++.+| .++.+++|+.|++++|
T Consensus        48 ~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N  125 (198)
T 1ds9_A           48 KACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNN  125 (198)
T ss_dssp             TTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEE
T ss_pred             CCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCC
Confidence            45666666666666666 666666666666666666666666666666666666666666665 4666666666666666


Q ss_pred             CCCCCCCC--CccccCccCcEEEccCCccc
Q psy5270          82 NLNEQSLP--GNFFMLETLRALYLGDNDFE  109 (352)
Q Consensus        82 ~l~g~~~p--~~~~~l~~L~~L~l~~N~l~  109 (352)
                      ++++  +|  ..+..+++|++|++++|.++
T Consensus       126 ~i~~--~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A          126 KITN--WGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             ECCC--HHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             cCCc--hhHHHHHhcCCCCCEEEecCCccc
Confidence            6654  33  25666666666666666665

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.50  E-value=6.6e-17  Score=159.05  Aligned_cols=243  Identities=16%  Similarity=0.096  Sum_probs=133.5

Q ss_pred             CCccEEEeeCCcCc-ccCccccCC--CCCCEEEccCCc-Cc--ccccccCCCCCCcEEEccCCCCCc-----cccccCCC
Q psy5270           2 LYITRITLSHNKLK-EIPPGLANL--VNLEILTLFNNQ-IE--TLPTSLSSLPKLRILNLGMNRLSS-----LPRGFGAF   70 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~-~ip~~l~~l--~~L~~L~L~~N~-l~--~ip~~l~~L~~L~~L~L~~N~l~~-----ip~~~~~l   70 (352)
                      ++|++|+|++|.++ ..+..++..  .+|++|+|++|. ++  .++....++++|++|+|++|.++.     ++..+.++
T Consensus       112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~  191 (592)
T 3ogk_B          112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN  191 (592)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHC
T ss_pred             CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcC
Confidence            45666666666665 444444432  236666666665 22  233334466777777777776652     33334566


Q ss_pred             CCCCEEEccCCCCCC---CCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccc
Q psy5270          71 PVLEVLDLTYNNLNE---QSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMA  147 (352)
Q Consensus        71 ~~L~~L~Ls~N~l~g---~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~  147 (352)
                      ++|+.|++++|.+++   ..++..+.++++|+.|++++|.++.+|..++++++|+.+.++...       +.+.......
T Consensus       192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~-------~~~~~~~~~~  264 (592)
T 3ogk_B          192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLN-------EDIGMPEKYM  264 (592)
T ss_dssp             CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCC-------CCTTCTTSSS
T ss_pred             CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccc-------cccchHHHHH
Confidence            777777777777752   123444556777777777777777777766666666655443200       0000000001


Q ss_pred             cccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc-ccCCccCcccccccCC--CcccCCCCCcccc
Q psy5270         148 GIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV-DTGLCKNPKIKMNRLS--SLPRGFGAFPVLE  224 (352)
Q Consensus       148 ~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~-~~~~l~~l~l~~n~l~--~ip~~~~~l~~L~  224 (352)
                      .+...+.+.....                      +.+. .+.+|..+ ....++.++++.|.++  .++..+..+++| 
T Consensus       265 ~l~~~~~L~~L~l----------------------~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L-  320 (592)
T 3ogk_B          265 NLVFPRKLCRLGL----------------------SYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL-  320 (592)
T ss_dssp             CCCCCTTCCEEEE----------------------TTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC-
T ss_pred             HhhccccccccCc----------------------cccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC-
Confidence            1111122111111                      1110 11122222 3456777888888876  233334555555 


Q ss_pred             hhhhhhhhhhccccccccCCCchhhhhHHhHhhhCC-----------CCcce--ecchhhhccccccccc
Q psy5270         225 AFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLG-----------DNDFE--VLPAEIGNLKNLQIML  281 (352)
Q Consensus       225 ~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls-----------~N~l~--~iP~~l~~l~~L~~l~  281 (352)
                           +.|+++ |++....++..+..+++|++|+++           .|.++  .++.-...+++|+.+.
T Consensus       321 -----~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~  384 (592)
T 3ogk_B          321 -----EVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMA  384 (592)
T ss_dssp             -----CEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEE
T ss_pred             -----CEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEE
Confidence                 688888 455443566666778889999998           46777  4555566788888874

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.48  E-value=1.2e-13  Score=126.74  Aligned_cols=102  Identities=25%  Similarity=0.311  Sum_probs=89.6

Q ss_pred             EEEeeCC-cCcccCccccCCCCCCEEEccC-CcCcccc-cccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEccCC
Q psy5270           6 RITLSHN-KLKEIPPGLANLVNLEILTLFN-NQIETLP-TSLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDLTYN   81 (352)
Q Consensus         6 ~L~Ls~N-~l~~ip~~l~~l~~L~~L~L~~-N~l~~ip-~~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls~N   81 (352)
                      .++++++ +|+.||+ |+.+++|++|+|++ |+++.+| ..|++|++|+.|+|++|+|+.+|+ .|+++++|+.|+|++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            5789998 8999999 99999999999996 9999776 589999999999999999997755 6899999999999999


Q ss_pred             CCCCCCCCCccccCccCcEEEccCCcccc
Q psy5270          82 NLNEQSLPGNFFMLETLRALYLGDNDFEV  110 (352)
Q Consensus        82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~~  110 (352)
                      +|++  +|..+....+|++|+|++|.+..
T Consensus        91 ~l~~--~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           91 ALES--LSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             CCSC--CCSTTTCSCCCCEEECCSSCCCC
T ss_pred             ccce--eCHHHcccCCceEEEeeCCCccC
Confidence            9986  56554443349999999999983

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.48  E-value=3.7e-14  Score=116.86  Aligned_cols=100  Identities=28%  Similarity=0.367  Sum_probs=87.3

Q ss_pred             CCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCcc-ccccCCCCCCCEEEccCCCCCCCCCCCccccCccCcEEEcc
Q psy5270          26 NLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL-PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLG  104 (352)
Q Consensus        26 ~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~  104 (352)
                      ..+++++++|.++.+|..+.  ++|++|+|++|+++.+ |..|+++++|++|+|++|++++ ..|..|..+++|++|+|+
T Consensus        10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc-cChhhccCCCCCCEEECC
Confidence            36899999999999998774  7899999999999987 5669999999999999999997 445567899999999999


Q ss_pred             CCccccchh-hccCcccHHHHHHhc
Q psy5270         105 DNDFEVLPA-EIGNLKNLQIILETF  128 (352)
Q Consensus       105 ~N~l~~ip~-~~~nl~~L~~L~l~~  128 (352)
                      +|+|+.+|+ .|.++++|+.++++.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~  111 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLN  111 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCC
Confidence            999998877 588888888776654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.46  E-value=5.7e-14  Score=116.21  Aligned_cols=98  Identities=27%  Similarity=0.371  Sum_probs=86.3

Q ss_pred             CCEEEccCCcCcccccccCCCCCCcEEEccCCCCCcc-ccccCCCCCCCEEEccCCCCCCCCCCC-ccccCccCcEEEcc
Q psy5270          27 LEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL-PRGFGAFPVLEVLDLTYNNLNEQSLPG-NFFMLETLRALYLG  104 (352)
Q Consensus        27 L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~g~~~p~-~~~~l~~L~~L~l~  104 (352)
                      -+.+++++|+++.+|..+.  ++|++|+|++|+++.+ |..|+++++|+.|+|++|+|++  +|. .|.++++|++|+|+
T Consensus        14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA--IPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECC
T ss_pred             CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc--cChhHhCCcchhhEEECC
Confidence            4789999999999998775  8999999999999977 5679999999999999999997  555 57899999999999


Q ss_pred             CCccccchhh-ccCcccHHHHHHhc
Q psy5270         105 DNDFEVLPAE-IGNLKNLQIILETF  128 (352)
Q Consensus       105 ~N~l~~ip~~-~~nl~~L~~L~l~~  128 (352)
                      +|+|+.+|+. |+++++|+.++++.
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~  114 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYN  114 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred             CCccceeCHHHhccccCCCEEEeCC
Confidence            9999988875 88888888776654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.46  E-value=1.7e-14  Score=131.71  Aligned_cols=98  Identities=16%  Similarity=0.221  Sum_probs=55.2

Q ss_pred             CCCccEEEeeCCcCc--ccCccccCCCCCCEEEccCCcCccccc-ccCC--------CCCCcEEEccCCCCCccccc-cC
Q psy5270           1 MLYITRITLSHNKLK--EIPPGLANLVNLEILTLFNNQIETLPT-SLSS--------LPKLRILNLGMNRLSSLPRG-FG   68 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~--~ip~~l~~l~~L~~L~L~~N~l~~ip~-~l~~--------L~~L~~L~L~~N~l~~ip~~-~~   68 (352)
                      +++|+.|||++|+++  ..++.  .++.++.+.+..|.   ||+ .|.+        +++|+.+++.. +++.|++. |.
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~--~~~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~  121 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAG--TYPNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFK  121 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSS--SSGGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTT
T ss_pred             hccCeEEecCcceeEEecCccc--cccccccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchhHHHhh
Confidence            468999999999998  33322  11223444444442   222 3444        66666666666 66666543 66


Q ss_pred             CCCCCCEEEccCCCCCCCCCCCccccCccCcEEEccC
Q psy5270          69 AFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGD  105 (352)
Q Consensus        69 ~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~~  105 (352)
                      ++++|+.++++.|.+.. .-+..|.++.++..+..+.
T Consensus       122 ~~~~L~~l~l~~n~i~~-i~~~aF~~~~~l~~l~~~~  157 (329)
T 3sb4_A          122 GCDNLKICQIRKKTAPN-LLPEALADSVTAIFIPLGS  157 (329)
T ss_dssp             TCTTCCEEEBCCSSCCE-ECTTSSCTTTCEEEECTTC
T ss_pred             cCcccceEEcCCCCccc-cchhhhcCCCceEEecCcc
Confidence            66666666666666653 2344555555555555444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.36  E-value=8.5e-16  Score=151.11  Aligned_cols=77  Identities=12%  Similarity=0.041  Sum_probs=46.7

Q ss_pred             cCCccCcccccccCC--CcccCCCCCcccchhhhhhhhhhccccccccCCCchhhhhHHhHhhhC---------CCCcce
Q psy5270         197 TGLCKNPKIKMNRLS--SLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYL---------GDNDFE  265 (352)
Q Consensus       197 ~~~l~~l~l~~n~l~--~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~L---------s~N~l~  265 (352)
                      ...++.++++.|.++  .++..+..+++|      +.|++++| ++...++.....+++|++|++         +.|.++
T Consensus       288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L------~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~  360 (594)
T 2p1m_B          288 CSRLTTLNLSYATVQSYDLVKLLCQCPKL------QRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALT  360 (594)
T ss_dssp             HTTCCEEECTTCCCCHHHHHHHHTTCTTC------CEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCC
T ss_pred             hCCCCEEEccCCCCCHHHHHHHHhcCCCc------CEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCC
Confidence            456777888888766  233323445555      68888887 543234444456788888887         445676


Q ss_pred             -ecchhh-hcccccccc
Q psy5270         266 -VLPAEI-GNLKNLQIM  280 (352)
Q Consensus       266 -~iP~~l-~~l~~L~~l  280 (352)
                       .....+ .++++|+.+
T Consensus       361 ~~~l~~l~~~~~~L~~L  377 (594)
T 2p1m_B          361 EQGLVSVSMGCPKLESV  377 (594)
T ss_dssp             HHHHHHHHHHCTTCCEE
T ss_pred             HHHHHHHHHhchhHHHH
Confidence             333333 347777776

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.31  E-value=1.2e-12  Score=120.24  Aligned_cols=98  Identities=21%  Similarity=0.217  Sum_probs=84.0

Q ss_pred             CEEEccCC-cCcccccccCCCCCCcEEEccC-CCCCccc-cccCCCCCCCEEEccCCCCCCCCCCCccccCccCcEEEcc
Q psy5270          28 EILTLFNN-QIETLPTSLSSLPKLRILNLGM-NRLSSLP-RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLG  104 (352)
Q Consensus        28 ~~L~L~~N-~l~~ip~~l~~L~~L~~L~L~~-N~l~~ip-~~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~  104 (352)
                      ..++++++ +++.||. +..+++|+.|+|++ |+|+.+| ..|+++++|+.|+|++|+|++ ..|..|+++++|++|+|+
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEeCC
Confidence            45799998 9999999 99999999999996 9999887 469999999999999999998 677889999999999999


Q ss_pred             CCccccchhhccCcccHHHHHHh
Q psy5270         105 DNDFEVLPAEIGNLKNLQIILET  127 (352)
Q Consensus       105 ~N~l~~ip~~~~nl~~L~~L~l~  127 (352)
                      +|+|+.+|+.+.....|+.|+++
T Consensus        89 ~N~l~~~~~~~~~~~~L~~l~l~  111 (347)
T 2ifg_A           89 FNALESLSWKTVQGLSLQELVLS  111 (347)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECC
T ss_pred             CCccceeCHHHcccCCceEEEee
Confidence            99999888754433336555444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.21  E-value=1.5e-13  Score=135.00  Aligned_cols=105  Identities=16%  Similarity=0.170  Sum_probs=69.3

Q ss_pred             CCccEEEeeCCcC-cc---cCcc------------ccCCCCCCEEEccCCcCc-ccccccC-CCCCCcEEEccCC-CCCc
Q psy5270           2 LYITRITLSHNKL-KE---IPPG------------LANLVNLEILTLFNNQIE-TLPTSLS-SLPKLRILNLGMN-RLSS   62 (352)
Q Consensus         2 ~~L~~L~Ls~N~l-~~---ip~~------------l~~l~~L~~L~L~~N~l~-~ip~~l~-~L~~L~~L~L~~N-~l~~   62 (352)
                      ++|++|+++++.. ..   .|..            ...+++|++|+|++|.++ ..+..+. .+++|++|++++| .++.
T Consensus        66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~  145 (594)
T 2p1m_B           66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST  145 (594)
T ss_dssp             TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred             CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence            5678888887652 11   2221            235677888888888877 4445554 5778888888887 5552


Q ss_pred             --cccccCCCCCCCEEEccCCCCCCCCCCCccc----cCccCcEEEccCCc
Q psy5270          63 --LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFF----MLETLRALYLGDND  107 (352)
Q Consensus        63 --ip~~~~~l~~L~~L~Ls~N~l~g~~~p~~~~----~l~~L~~L~l~~N~  107 (352)
                        ++..+.++++|+.|++++|.+++ ..+..+.    .+++|++|++++|.
T Consensus       146 ~~l~~~~~~~~~L~~L~L~~~~i~~-~~~~~l~~~~~~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          146 DGLAAIAATCRNLKELDLRESDVDD-VSGHWLSHFPDTYTSLVSLNISCLA  195 (594)
T ss_dssp             HHHHHHHHHCTTCCEEECTTCEEEC-CCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred             HHHHHHHHhCCCCCEEeCcCCccCC-cchHHHHHHhhcCCcCcEEEecccC
Confidence              55555577888888888888765 3333333    55678888888876

>3i9v_6 NADH-quinone oxidoreductase subunit 6; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_6* 2fug_6* 3iam_6* 3ias_6* 3m9s_6*

Probab=99.06  E-value=8.1e-11  Score=94.89  Aligned_cols=71  Identities=49%  Similarity=1.043  Sum_probs=65.1

Q ss_pred             ccccCCceeeeccccccCCcccccccccccCCCcccccceecCCCCCCHHHHHHHHHHHHHHHHhhhhhhhh
Q psy5270         278 QIMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQSW  349 (352)
Q Consensus       278 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gcpp~~~~~~~~~~~~~~~~~~~~~~~~~  349 (352)
                      +.+..+++.+..|.|...+|++ .+|....|+++++|+|+++|||||.|++++.+++++++|+++.+..+.|
T Consensus        97 e~~p~pk~VIAvGsCA~~GGi~-~~y~~~~gvd~iipVDv~IPGCPP~Pe~il~~l~~l~~ki~~~~~~~~~  167 (181)
T 3i9v_6           97 EQMPDPKWVISMGACASSGGMF-NNYAIVQNVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVRGQAYNERG  167 (181)
T ss_dssp             HSSCSSCCEEEEHHHHHSCTTC-CSTTBCSCGGGTSCCSEEECCSSCCHHHHHHHHHHHHHHHTTCCBCTTS
T ss_pred             HHcCCCceEEEeecccccCCCC-CCCcccCCcccCCCccEEeeCCCCCHHHHHHHHHHHHHHHhhccccccc
Confidence            4557899999999999999999 7899999999999999999999999999999999999999988766554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.00  E-value=9.2e-10  Score=100.13  Aligned_cols=122  Identities=20%  Similarity=0.239  Sum_probs=90.3

Q ss_pred             CCCccEEEeeCCcCcccCcc-ccCCCCCCEEEccCCcCcccccc--------------c---------------------
Q psy5270           1 MLYITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTS--------------L---------------------   44 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~ip~~--------------l---------------------   44 (352)
                      |++|+.+++++ .++.|++. |.+|++|+.+++++|.+..|++.              .                     
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            46788888888 78888764 88888888888888875322210              0                     


Q ss_pred             --------------------------------------------CCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEcc
Q psy5270          45 --------------------------------------------SSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLT   79 (352)
Q Consensus        45 --------------------------------------------~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~Ls   79 (352)
                                                                  ..+++|+.+++++|+++.||+. |.++++|+.+++.
T Consensus       179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~  258 (329)
T 3sb4_A          179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP  258 (329)
T ss_dssp             EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred             ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence                                                        0267888999998889888875 8888899999998


Q ss_pred             CCCCCCCCCCCccccCccCc-EEEccCCccccch-hhccCcccHHHHHH
Q psy5270          80 YNNLNEQSLPGNFFMLETLR-ALYLGDNDFEVLP-AEIGNLKNLQIILE  126 (352)
Q Consensus        80 ~N~l~g~~~p~~~~~l~~L~-~L~l~~N~l~~ip-~~~~nl~~L~~L~l  126 (352)
                      .| ++. .-+..|.++.+|+ .+++.+ +++.|+ .+|.++.+|+.+++
T Consensus       259 ~n-i~~-I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l  304 (329)
T 3sb4_A          259 HN-LKT-IGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLA  304 (329)
T ss_dssp             TT-CCE-ECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEE
T ss_pred             cc-cce-ehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEe
Confidence            87 654 2345788888898 999988 777775 47888888877654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.89  E-value=3.4e-11  Score=111.60  Aligned_cols=127  Identities=19%  Similarity=0.187  Sum_probs=66.6

Q ss_pred             CCccEEEeeCCcCccc-Ccc----cc-CCCCCCEEEccCCcCcc--cccccCCCCCCcEEEccCCCCCcc-----cccc-
Q psy5270           2 LYITRITLSHNKLKEI-PPG----LA-NLVNLEILTLFNNQIET--LPTSLSSLPKLRILNLGMNRLSSL-----PRGF-   67 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~i-p~~----l~-~l~~L~~L~L~~N~l~~--ip~~l~~L~~L~~L~L~~N~l~~i-----p~~~-   67 (352)
                      +.|+.|+|++|.++.. ...    +. +.++|++|+|++|.++.  +..-...+++|+.|+|++|+++..     ...+ 
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            4566777777776621 122    22 22567777777776651  222222345666677777666521     1111 


Q ss_pred             CCCCCCCEEEccCCCCCC---CCCCCccccCccCcEEEccCCcccc-----chhhccCcccHHHHHHhc
Q psy5270          68 GAFPVLEVLDLTYNNLNE---QSLPGNFFMLETLRALYLGDNDFEV-----LPAEIGNLKNLQIILETF  128 (352)
Q Consensus        68 ~~l~~L~~L~Ls~N~l~g---~~~p~~~~~l~~L~~L~l~~N~l~~-----ip~~~~nl~~L~~L~l~~  128 (352)
                      ...++|+.|+|++|.++.   ..++..+..+++|++|+|++|.++.     ++..+.+.++|+.|+++.
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~  220 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAY  220 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCS
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCC
Confidence            234566666666666643   0123333455666666666666651     344455555555555443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.85  E-value=5.6e-09  Score=97.56  Aligned_cols=105  Identities=16%  Similarity=0.259  Sum_probs=73.7

Q ss_pred             cCcccCc-cccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEccCCCCCCCCCC
Q psy5270          13 KLKEIPP-GLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDLTYNNLNEQSLP   89 (352)
Q Consensus        13 ~l~~ip~-~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls~N~l~g~~~p   89 (352)
                      .++.|++ .|.++ +|+.+++..| ++.|+. +|.+ .+|+.+.+.. +++.|+. .|.++++|+.++++.|+++.  +|
T Consensus       123 ~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~--I~  196 (401)
T 4fdw_A          123 SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITK--LP  196 (401)
T ss_dssp             TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSE--EC
T ss_pred             ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceE--ec
Confidence            3445554 36664 7888888776 777754 5666 4688888875 6777764 48888888899988888874  66


Q ss_pred             CccccCccCcEEEccCCccccchh-hccCcccHHHH
Q psy5270          90 GNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQII  124 (352)
Q Consensus        90 ~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L  124 (352)
                      ......++|+.+.+..+ ++.|+. +|.++.+|+.+
T Consensus       197 ~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l  231 (401)
T 4fdw_A          197 ASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTI  231 (401)
T ss_dssp             TTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCE
T ss_pred             hhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEE
Confidence            65445688888888744 776655 67777766654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.85  E-value=3.5e-10  Score=104.74  Aligned_cols=127  Identities=18%  Similarity=0.171  Sum_probs=89.1

Q ss_pred             CCccEEEeeCCcCc-ccCccc-cCCCCCCEEEccCCcCccc-cccc-----CCCCCCcEEEccCCCCCc-----cccccC
Q psy5270           2 LYITRITLSHNKLK-EIPPGL-ANLVNLEILTLFNNQIETL-PTSL-----SSLPKLRILNLGMNRLSS-----LPRGFG   68 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~-~ip~~l-~~l~~L~~L~L~~N~l~~i-p~~l-----~~L~~L~~L~L~~N~l~~-----ip~~~~   68 (352)
                      ++|++|||++|.++ .-...+ ..+++|++|+|++|.++.. ...+     ...++|+.|+|++|.++.     ++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            47889999999887 322222 3456788999999988732 2222     346789999999998873     455567


Q ss_pred             CCCCCCEEEccCCCCCCC---CCCCccccCccCcEEEccCCcccc-----chhhccCcccHHHHHHhc
Q psy5270          69 AFPVLEVLDLTYNNLNEQ---SLPGNFFMLETLRALYLGDNDFEV-----LPAEIGNLKNLQIILETF  128 (352)
Q Consensus        69 ~l~~L~~L~Ls~N~l~g~---~~p~~~~~l~~L~~L~l~~N~l~~-----ip~~~~nl~~L~~L~l~~  128 (352)
                      ..++|+.|+|++|.++..   .++..+...++|++|+|++|.++.     +...+...++|+.|+++.
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~  248 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYF  248 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTT
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccC
Confidence            788899999999988641   124556677789999999998872     444555566677776665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.79  E-value=6.1e-09  Score=97.34  Aligned_cols=109  Identities=17%  Similarity=0.251  Sum_probs=85.6

Q ss_pred             CccEEEeeCCcCcccCcc-ccCCCCCCEEEccCCcCcccc-cccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccC
Q psy5270           3 YITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTY   80 (352)
Q Consensus         3 ~L~~L~Ls~N~l~~ip~~-l~~l~~L~~L~L~~N~l~~ip-~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~   80 (352)
                      +|+.+++..| ++.|++. |.+ .+|+.+.+.+ .++.|+ ..|.++++|+.++++.|+++.||......++|+.+.+..
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~  212 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV  212 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT
T ss_pred             CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC
Confidence            5788888766 7788764 666 4799999986 677775 589999999999999999999988755578999999985


Q ss_pred             CCCCCCCCCCccccCccCcEEEccCCccccchh-hccC
Q psy5270          81 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGN  117 (352)
Q Consensus        81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~n  117 (352)
                      + ++. .-...|.++++|+.+++..| ++.|+. +|.+
T Consensus       213 ~-l~~-I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~  247 (401)
T 4fdw_A          213 T-LKE-IGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE  247 (401)
T ss_dssp             T-CCE-ECTTTTTTCTTCCCEECCTT-CCEECTTTTTT
T ss_pred             c-hhe-ehhhHhhCCCCCCEEecCCC-ccCcccccccc
Confidence            5 654 23457889999999999875 666654 4444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.73  E-value=2.2e-09  Score=89.34  Aligned_cols=108  Identities=14%  Similarity=0.112  Sum_probs=76.7

Q ss_pred             CCccEEEeeCC-cCc-c----cCccccCCCCCCEEEccCCcCcc-----cccccCCCCCCcEEEccCCCCCc-----ccc
Q psy5270           2 LYITRITLSHN-KLK-E----IPPGLANLVNLEILTLFNNQIET-----LPTSLSSLPKLRILNLGMNRLSS-----LPR   65 (352)
Q Consensus         2 ~~L~~L~Ls~N-~l~-~----ip~~l~~l~~L~~L~L~~N~l~~-----ip~~l~~L~~L~~L~L~~N~l~~-----ip~   65 (352)
                      +.|++|+|++| .+. +    +...+...++|++|+|++|.++.     +...+...++|++|+|++|.++.     +..
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~  115 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE  115 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence            56888888888 776 2    44556677788888888888862     34455666778888888888872     456


Q ss_pred             ccCCCCCCCEEEc--cCCCCCCC---CCCCccccCccCcEEEccCCccc
Q psy5270          66 GFGAFPVLEVLDL--TYNNLNEQ---SLPGNFFMLETLRALYLGDNDFE  109 (352)
Q Consensus        66 ~~~~l~~L~~L~L--s~N~l~g~---~~p~~~~~l~~L~~L~l~~N~l~  109 (352)
                      .+...++|+.|+|  ++|.++..   .+...+...++|++|++++|.+.
T Consensus       116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            6777778888888  77887641   02233445577888888888876

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.67  E-value=4.3e-09  Score=92.34  Aligned_cols=80  Identities=25%  Similarity=0.343  Sum_probs=50.4

Q ss_pred             EEccCCcCccccc----ccCCCCCCcEEEccCCCCCcc---ccccCCCCCCCEEEccCCCCCCCCCCCccccCc--cCcE
Q psy5270          30 LTLFNNQIETLPT----SLSSLPKLRILNLGMNRLSSL---PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLE--TLRA  100 (352)
Q Consensus        30 L~L~~N~l~~ip~----~l~~L~~L~~L~L~~N~l~~i---p~~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~--~L~~  100 (352)
                      ++++.|+...++.    ...++++|+.|+|++|+|+.+   |..++.+++|+.|+|++|++++  + ..+..+.  +|++
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~--~-~~l~~l~~l~L~~  224 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS--E-RELDKIKGLKLEE  224 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS--G-GGGGGGTTSCCSE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC--c-hhhhhcccCCcce
Confidence            5666665433332    224567777777777777744   3455677777777777777765  2 3445454  7777


Q ss_pred             EEccCCccc-cch
Q psy5270         101 LYLGDNDFE-VLP  112 (352)
Q Consensus       101 L~l~~N~l~-~ip  112 (352)
                      |+|++|.+. .+|
T Consensus       225 L~L~~Npl~~~~~  237 (267)
T 3rw6_A          225 LWLDGNSLCDTFR  237 (267)
T ss_dssp             EECTTSTTGGGCS
T ss_pred             EEccCCcCccccC
Confidence            777777776 344

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.47  E-value=8.9e-08  Score=83.92  Aligned_cols=94  Identities=29%  Similarity=0.276  Sum_probs=73.8

Q ss_pred             EEeeCCcCcccCcc----ccCCCCCCEEEccCCcCccc---ccccCCCCCCcEEEccCCCCCccccccCCCC--CCCEEE
Q psy5270           7 ITLSHNKLKEIPPG----LANLVNLEILTLFNNQIETL---PTSLSSLPKLRILNLGMNRLSSLPRGFGAFP--VLEVLD   77 (352)
Q Consensus         7 L~Ls~N~l~~ip~~----l~~l~~L~~L~L~~N~l~~i---p~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~--~L~~L~   77 (352)
                      ++++.|....++..    ..++++|+.|+|++|+++.+   |..+..+++|+.|+|++|+|+.+ .++..+.  +|+.|+
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~  226 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELW  226 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEE
Confidence            66777865544432    25688999999999999854   46677899999999999999976 3344444  899999


Q ss_pred             ccCCCCCCCCCCC-------ccccCccCcEEE
Q psy5270          78 LTYNNLNEQSLPG-------NFFMLETLRALY  102 (352)
Q Consensus        78 Ls~N~l~g~~~p~-------~~~~l~~L~~L~  102 (352)
                      |++|.+.+ .+|.       .+..+++|+.||
T Consensus       227 L~~Npl~~-~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          227 LDGNSLCD-TFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             CTTSTTGG-GCSSHHHHHHHHHHHCTTCCEES
T ss_pred             ccCCcCcc-ccCcchhHHHHHHHHCcccCeEC
Confidence            99999987 6774       367788999886

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.32  E-value=3.7e-08  Score=81.83  Aligned_cols=90  Identities=17%  Similarity=0.121  Sum_probs=72.8

Q ss_pred             cccCCCCCCEEEccCC-cCc-----ccccccCCCCCCcEEEccCCCCCc-----cccccCCCCCCCEEEccCCCCCCC--
Q psy5270          20 GLANLVNLEILTLFNN-QIE-----TLPTSLSSLPKLRILNLGMNRLSS-----LPRGFGAFPVLEVLDLTYNNLNEQ--   86 (352)
Q Consensus        20 ~l~~l~~L~~L~L~~N-~l~-----~ip~~l~~L~~L~~L~L~~N~l~~-----ip~~~~~l~~L~~L~Ls~N~l~g~--   86 (352)
                      .+...++|++|+|++| .+.     .+...+...++|++|+|++|+++.     +...+...++|+.|+|++|.++..  
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3667889999999999 887     245567788999999999999972     455566678899999999999751  


Q ss_pred             -CCCCccccCccCcEEEc--cCCccc
Q psy5270          87 -SLPGNFFMLETLRALYL--GDNDFE  109 (352)
Q Consensus        87 -~~p~~~~~l~~L~~L~l--~~N~l~  109 (352)
                       .+...+...++|++|+|  ++|.++
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCC
Confidence             13456677789999999  889998

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.23  E-value=1.9e-07  Score=85.80  Aligned_cols=124  Identities=17%  Similarity=0.166  Sum_probs=59.7

Q ss_pred             CCccEEEeeCCcCc----------ccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCC-cccccc--C
Q psy5270           2 LYITRITLSHNKLK----------EIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLS-SLPRGF--G   68 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~----------~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~-~ip~~~--~   68 (352)
                      ++|+.|.+..+...          .+++.+..+++|+.|+|++|.-..+++ + .+++|+.|++..+.++ .....+  .
T Consensus       139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~  216 (362)
T 2ra8_A          139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGS  216 (362)
T ss_dssp             TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred             chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHc
Confidence            46677766554321          123334556677777776663123333 2 2566777777666655 211222  2


Q ss_pred             CCCCCCEEEccC--CCCCCC----CCCCcc--ccCccCcEEEccCCccc-cchhhc---cCcccHHHHHHh
Q psy5270          69 AFPVLEVLDLTY--NNLNEQ----SLPGNF--FMLETLRALYLGDNDFE-VLPAEI---GNLKNLQIILET  127 (352)
Q Consensus        69 ~l~~L~~L~Ls~--N~l~g~----~~p~~~--~~l~~L~~L~l~~N~l~-~ip~~~---~nl~~L~~L~l~  127 (352)
                      .+++|+.|+|+.  |...|.    .+-..+  ..+++|++|++++|.+. ..+..+   ..+++|+.|+++
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs  287 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS  287 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECC
T ss_pred             cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECC
Confidence            566666666643  221110    000111  23456666666666665 222222   234555555544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.16  E-value=5.4e-07  Score=82.81  Aligned_cols=125  Identities=18%  Similarity=0.280  Sum_probs=85.1

Q ss_pred             CCCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCc-ccccccC--CCCCCcEEEccC--CC------CCcccccc--
Q psy5270           1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIE-TLPTSLS--SLPKLRILNLGM--NR------LSSLPRGF--   67 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~-~ip~~l~--~L~~L~~L~L~~--N~------l~~ip~~~--   67 (352)
                      +++|+.|++++|.-..+|+ +. +++|+.|+|..|.+. ..-..++  .+++|+.|+|+.  |.      +..+.+.+  
T Consensus       171 ~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~  248 (362)
T 2ra8_A          171 MPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK  248 (362)
T ss_dssp             CTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred             CCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence            4789999999884225555 43 789999999998886 3223343  789999999853  22      11222223  


Q ss_pred             CCCCCCCEEEccCCCCCCCCCCCccc---cCccCcEEEccCCcccc-----chhhccCcccHHHHHHhc
Q psy5270          68 GAFPVLEVLDLTYNNLNEQSLPGNFF---MLETLRALYLGDNDFEV-----LPAEIGNLKNLQIILETF  128 (352)
Q Consensus        68 ~~l~~L~~L~Ls~N~l~g~~~p~~~~---~l~~L~~L~l~~N~l~~-----ip~~~~nl~~L~~L~l~~  128 (352)
                      +.+++|+.|+|++|.+.. ..+..+.   .+++|++|+|+.|.++.     ++..+.++++|+.|+++.
T Consensus       249 ~~~p~Lr~L~L~~~~i~~-~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~  316 (362)
T 2ra8_A          249 DRFPNLKWLGIVDAEEQN-VVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY  316 (362)
T ss_dssp             TTCTTCCEEEEESCTTHH-HHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred             CCCCCcCEEeCCCCCCch-HHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence            358899999999998864 3333333   47899999999999983     444445566666665554

>1wui_S Periplasmic [NIFE] hydrogenase small subunit; high resolution [NIFE]hydrogenase, oxidoreductase, NI-A state, unready state; HET: NFC; 1.04A {Desulfovibrio vulgaris str} SCOP: e.19.1.1 PDB: 1h2r_S 1ubj_S 1ubh_S 1ubl_S 1ubm_S 1ubo_S 1ubr_S 1ubt_S 1ubu_S 1wuh_S* 1ubk_S* 1wuj_S 1wuk_S 1wul_S 1e3d_A*

Probab=97.93  E-value=2.1e-06  Score=74.62  Aligned_cols=61  Identities=30%  Similarity=0.500  Sum_probs=53.5

Q ss_pred             cccCCceeeeccccccCCcccccccc--cccCCCcccc---c-ceecCCCCCCHHHHHHHHHHHHHH
Q psy5270         279 IMLEPRWVISMGSCANGGGYYHYSYS--VVRGCDRIIP---V-DIYVPGCPPTAEALMYGILQLQKK  339 (352)
Q Consensus       279 ~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~-~~~~~gcpp~~~~~~~~~~~~~~~  339 (352)
                      ....+.+.+..|.|...+|++...++  ...|++.+++   + |+++|||||.|.+++.+|++++..
T Consensus       101 ~~~~ak~VIAvGsCA~~GGi~a~~~n~t~~~gv~~vv~~~~vpdi~IPGCPP~Pe~i~~~l~~ll~~  167 (267)
T 1wui_S          101 ILPKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGVKAINIAGCPPNPYNLVGTIVYYLKN  167 (267)
T ss_dssp             HGGGSSEEEEESHHHHHCCGGGSTTCTTCEECHHHHHGGGTCCCEEECSSSCCHHHHHHHHHHHHHH
T ss_pred             HhccCCEEEEeeeccccCCCCCCcCCCcCCCCHHHhcCcCCceEEEEeCCCCCHHHHHHHHHHHHHc
Confidence            34678899999999999999988777  5679999998   6 999999999999999999997643

>1yq9_A Periplasmic [NIFE] hydrogenase small subunit; oxidoreductase; 2.35A {Desulfovibrio gigas} SCOP: e.19.1.1 PDB: 2frv_S 1frv_A

Probab=97.92  E-value=1.8e-06  Score=74.86  Aligned_cols=71  Identities=25%  Similarity=0.414  Sum_probs=57.7

Q ss_pred             cccCCceeeeccccccCCccccc--ccccccCCCcccc----cceecCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy5270         279 IMLEPRWVISMGSCANGGGYYHY--SYSVVRGCDRIIP----VDIYVPGCPPTAEALMYGILQLQKKVKRMKILQSWYR  351 (352)
Q Consensus       279 ~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~gcpp~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (352)
                      ....+.+.+..|.|...+|++..  ++....|++.+++    .|+++|||||.|.+++.+|+++++..  ...+-+|.|
T Consensus        99 ~~~~~k~VIA~GsCA~~GGi~a~~~n~~~~~gv~~~l~~~~~~di~IPGCPP~Pe~i~~~l~~ll~~~--~p~Ld~~~R  175 (264)
T 1yq9_A           99 VAPKAKAVIAIGTCATYGGVQAAKPNPTGTVGVNEALGKLGVKAINIAGCPPNPMNFVGTVVHLLTKG--MPELDKQGR  175 (264)
T ss_dssp             HGGGSSEEEEEHHHHHHCCGGGSTTCTTCEECHHHHHGGGTCCCEEECSSSCCHHHHHHHHHHHHHTC--SCCBCTTSC
T ss_pred             HhccCCEEEEeccccccCCCCCCCCCCccccChhHhccCCCCeEEEEECCCCCHHHHHHHHHHHHhCC--CCCccccCC
Confidence            34678899999999999999876  5556778888887    79999999999999999999988765  334544443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.92  E-value=1.6e-05  Score=73.76  Aligned_cols=53  Identities=21%  Similarity=0.337  Sum_probs=27.5

Q ss_pred             CCccEEEeeCCcCcccCc-cccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEcc
Q psy5270           2 LYITRITLSHNKLKEIPP-GLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLG   56 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~-~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~   56 (352)
                      ++|+.+.+.. .++.|++ +|.++++|+.+++.++ ++.|+. .|.++++|+.+.+.
T Consensus        71 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p  125 (394)
T 4fs7_A           71 RKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP  125 (394)
T ss_dssp             TTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             CCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc
Confidence            4555666643 3555544 3556666666666543 444432 45555555554443

>1h2a_S Hydrogenase; SO ligand, hydrogen metabolism, Mg center, MIR, MAD, oxidoreductase; 1.80A {Desulfovibrio vulgaris str} SCOP: e.19.1.1

Probab=97.84  E-value=2.5e-06  Score=75.68  Aligned_cols=57  Identities=28%  Similarity=0.472  Sum_probs=51.9

Q ss_pred             cCCceeeeccccccCCcccccccc--cccCCCcccc---c-ceecCCCCCCHHHHHHHHHHHH
Q psy5270         281 LEPRWVISMGSCANGGGYYHYSYS--VVRGCDRIIP---V-DIYVPGCPPTAEALMYGILQLQ  337 (352)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~-~~~~~gcpp~~~~~~~~~~~~~  337 (352)
                      ..+.+.+..|.|...+|++...++  ...|++.+++   + |+++|||||.|.+++.+|++++
T Consensus       153 ~~ak~VIAvGsCA~~GGi~a~~~npt~~~gv~~vvp~~~vpdi~IPGCPP~Pe~i~~~l~~lL  215 (317)
T 1h2a_S          153 PKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGVKAINIAGCPPNPYNLVGTIVYYL  215 (317)
T ss_dssp             GGCSEEEEESHHHHHCCGGGSTTCTTCEECHHHHHGGGTCCCBCCCCSSCCHHHHHHHHHHHH
T ss_pred             ccCCEEEEeccccccCCcCCCCCCCccCcCHHHhcCcCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence            678899999999999999988665  7889999999   7 9999999999999999999975

>2wpn_A Periplasmic [nifese] hydrogenase, small subunit; metal-binding, oxidoreductase, oxygen tolerance; HET: FSX SBY PSW; 2.04A {Desulfovibrio vulgaris}

Probab=97.82  E-value=5.5e-06  Score=73.54  Aligned_cols=62  Identities=21%  Similarity=0.447  Sum_probs=53.9

Q ss_pred             cCCceeeeccccccCCccccc--ccccccCCCccc-----cc-ceecCCCCCCHHHHHHHHHHHHHHHHh
Q psy5270         281 LEPRWVISMGSCANGGGYYHY--SYSVVRGCDRII-----PV-DIYVPGCPPTAEALMYGILQLQKKVKR  342 (352)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-----~~-~~~~~gcpp~~~~~~~~~~~~~~~~~~  342 (352)
                      ..+.+.+..|.|...+|++..  ++....|++.++     ++ |+++|||||.|.+++.+|.+++++.++
T Consensus       144 ~~ak~VIAvGsCA~~GGI~a~~~n~t~~~gv~~il~~~~~~vp~I~IPGCPP~Pe~i~~~L~~ll~~~~~  213 (317)
T 2wpn_A          144 PNAAAVLAVGTCAAYGGIPAAEGSETGATAVSKFLGDNGIKTPVVNIPGCPPHPDWIVGTVVLALDAIKK  213 (317)
T ss_dssp             GGEEEEEEEHHHHHHCTGGGSTTCCSCEECHHHHHHHTTCCCCEEEECSSSCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCEEEEeccccccCCCCCCCCCCccccCHHHHhhccCCCCCeEEeeCCCCCHHHHHHHHHHHHhcccc
Confidence            577899999999999998874  555677888877     56 999999999999999999999998864

>3rgw_S Membrane-bound hydrogenase (NIFE) small subunit H; [NIFE] hydrogenase, high-resolution knallgasbacteria, proteobacteria; 1.50A {Ralstonia eutropha}

Probab=97.78  E-value=1.1e-05  Score=71.79  Aligned_cols=72  Identities=29%  Similarity=0.360  Sum_probs=57.8

Q ss_pred             cccCCceeeeccccccCCccccccccc--ccCCCcccc--cceecCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy5270         279 IMLEPRWVISMGSCANGGGYYHYSYSV--VRGCDRIIP--VDIYVPGCPPTAEALMYGILQLQKKVKRMKILQSWYR  351 (352)
Q Consensus       279 ~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~gcpp~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (352)
                      ....+.+.+..|.|...+|++...++.  ..|++.+++  +|+++|||||.|.+++.+|++++... +.-.|-+|.|
T Consensus       102 ~~~~~k~VIAvGtCA~~GGi~a~~~n~~~~~gv~~~i~~~vdi~IPGCPP~Pe~i~~~l~~ll~~G-~~p~LD~~~R  177 (339)
T 3rgw_S          102 VAKDAKAIISWGSCASWGCVQAAKPNPTQATPVHKVITDKPIIKVPGCPPIAEVMTGVITYMLTFD-RIPELDRQGR  177 (339)
T ss_dssp             HHTTCSEEEEEHHHHHTCTGGGSTTCTTCBCCGGGTCCSSCEEEECSSSCCHHHHHHHHHHHHHHS-SCCCBCTTSC
T ss_pred             HccCCCEEEEeccccccCCcCCCCCCccccCCHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHHhcC-CCCCCCcccC
Confidence            346889999999999999999877654  668999988  99999999999999999999877543 3344444443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.72  E-value=5.6e-05  Score=58.55  Aligned_cols=53  Identities=28%  Similarity=0.402  Sum_probs=25.9

Q ss_pred             EEEccCCcCc--ccccccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEccCCCC
Q psy5270          29 ILTLFNNQIE--TLPTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNNL   83 (352)
Q Consensus        29 ~L~L~~N~l~--~ip~~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~Ls~N~l   83 (352)
                      .++.+++.++  .+|..+.  ++|+.|+|++|+|+.||.. |..+++|+.|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4444444444  4443322  1345555555555555443 44455555556655554

>3ayx_B Membrane-bound hydrogenase small subunit; oxidoreductase, membrane-bound NI-Fe hydrogenase; 1.18A {Hydrogenovibrio marinus} PDB: 3ayy_B 3ayz_B

Probab=97.66  E-value=1.2e-05  Score=70.24  Aligned_cols=60  Identities=30%  Similarity=0.448  Sum_probs=52.4

Q ss_pred             cccCCceeeeccccccCCccccc--ccccccCCCcccc--cc---eecCCCCCCHHHHHHHHHHHHH
Q psy5270         279 IMLEPRWVISMGSCANGGGYYHY--SYSVVRGCDRIIP--VD---IYVPGCPPTAEALMYGILQLQK  338 (352)
Q Consensus       279 ~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~---~~~~gcpp~~~~~~~~~~~~~~  338 (352)
                      ....+.+.+..|.|...+|++..  ++....|++.+++  +|   +++|||||.|.+++.+|++++.
T Consensus       108 ~~~~ak~VIA~GsCA~~GGi~a~~pn~~~~~gv~~~i~~~vd~pvi~IPGCPP~Pe~i~~~l~~~Ll  174 (283)
T 3ayx_B          108 MADDAKAIISWGSCASWGCVQAAKPNPTQATPVHKFLGGGYDKPIIKVPGCPPIAEVMTGVITYMLT  174 (283)
T ss_dssp             HHHTEEEEEEEHHHHHTCTGGGSTTCTTCBCCHHHHHCTTCCSCEEEECSSSCCHHHHHHHHHHHHH
T ss_pred             HcccCCEEEEeeeccccCCCCCCCCCCccCcChhHhccccCCCceEEeeCCCCCHHHHHHHHHHHHH
Confidence            33678899999999999999887  5777889999999  89   9999999999999999998443

>3myr_A Hydrogenase (NIFE) small subunit HYDA; [NIFE] hydrogenase, photosynthetic P sulfur bacterium, iron-sulfur cluster, NI-A state; HET: SF4; 2.10A {Allochromatium vinosum} SCOP: e.19.1.0

Probab=97.65  E-value=8.1e-06  Score=70.61  Aligned_cols=72  Identities=25%  Similarity=0.320  Sum_probs=57.6

Q ss_pred             cccCCceeeeccccccCCcccccccc--cccCCCccc--ccceecCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy5270         279 IMLEPRWVISMGSCANGGGYYHYSYS--VVRGCDRII--PVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQSWYR  351 (352)
Q Consensus       279 ~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~gcpp~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (352)
                      ....+++.+..|.|...+|++..+++  ...|++.++  ++|+++|||||.|.+++.+|++++..- +.-.+-+|.|
T Consensus       100 ~~~~~k~VIA~G~CA~~GGi~a~~~n~~~~~gv~~~i~~~vdi~IPGCPp~Pe~i~~~l~~ll~~G-~~p~Ld~~~R  175 (269)
T 3myr_A          100 TVEHAAAVIAVGTCAAFGGLPQARPNPTGAMSVMDLVRDKPVINVPGCPPIPMVITGVIAHYLVFG-RLPELDGYGR  175 (269)
T ss_dssp             HHTTCSEEEEEHHHHHHCHHHHSTTCTTCEECHHHHCCSSCEEEECSSSCCHHHHHHHHHHHHHHS-SCCCBCTTSC
T ss_pred             HcccCCEEEEeccccccCCccCCCCCccccCCHHHhCCCCCEEEecCCCCCHHHHHHHHHHHHHcC-CCCCCCcccC
Confidence            34688999999999999999877655  466888888  999999999999999999999987432 3344554444

>3uqy_S Hydrogenase-1 small chain; membrane-bound hydrogenase, oxidoreductase; HET: LMT; 1.47A {Escherichia coli} PDB: 3usc_S* 3use_S*

Probab=97.62  E-value=1.6e-05  Score=70.62  Aligned_cols=70  Identities=24%  Similarity=0.319  Sum_probs=56.0

Q ss_pred             cCCceeeeccccccCCcccccccc--cccCCCcccc--cceecCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy5270         281 LEPRWVISMGSCANGGGYYHYSYS--VVRGCDRIIP--VDIYVPGCPPTAEALMYGILQLQKKVKRMKILQSWYR  351 (352)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~gcpp~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (352)
                      ..+.+.+..|.|...+|++...++  ...|++.+++  +|+++|||||.|..++.+|++++... +.-.+-+|.|
T Consensus       104 ~~ak~VIAvGsCA~~GGi~a~~~npt~~~gv~~vi~~~~di~IPGCPP~Pe~i~~~l~~ll~~G-~~p~LD~~~R  177 (335)
T 3uqy_S          104 AGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFD-RLPDVDRMGR  177 (335)
T ss_dssp             HHEEEEEEEHHHHHTCHHHHSTTCTTCBCCGGGTCCSSCEEEECSSSCCHHHHHHHHHHHHHHT-SCCCBCTTSC
T ss_pred             cCCCEEEEeccccccCCccCCCCCcccCcCHHHhCCCCCEEEEeCCCCCHHHHHHHHHHHHhCC-CCCCCCccCC
Confidence            567899999999999999887765  4668999987  79999999999999999999876442 3344444443

>1yqw_A Periplasmic [NIFE] hydrogenase small subunit; NI-Fe hydrogenase unready state, oxidoreductase; 1.83A {Desulfovibrio fructosovorans} PDB: 3cur_A 3cus_A 3h3x_A 1yrq_A 1frf_S

Probab=97.61  E-value=1.4e-05  Score=69.19  Aligned_cols=69  Identities=22%  Similarity=0.431  Sum_probs=54.3

Q ss_pred             ccCCceeeeccccccCCcccccccc--cccCCCc--ccccceecCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy5270         280 MLEPRWVISMGSCANGGGYYHYSYS--VVRGCDR--IIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQSWYR  351 (352)
Q Consensus       280 l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~gcpp~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (352)
                      ...+.+.+..|.|...+|++...++  ...|++.  .+|+ +++|||||.|.+++.+|++++...  .-.+-+|.|
T Consensus       102 ~~~~k~VIA~GsCA~~GGi~a~~~n~~~~~gv~~v~~~PV-i~IPGCPP~Pe~i~~~l~~ll~~~--~p~Ld~~~R  174 (264)
T 1yqw_A          102 AAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKT-INIPGCPPNPINFVGAVVHVLTKG--IPDLDENGR  174 (264)
T ss_dssp             HHTCSCEEEESHHHHHCCGGGSTTCTTCEECHHHHHTSCC-EEECSSSCCHHHHHHHHHHHHHTC--CCCBCTTSC
T ss_pred             hcCCCEEEEeccccccCCccCCCCCCcccccccccCCCCE-EEeeCCCCCHHHHHHHHHHHHhCC--CccccccCC
Confidence            3678899999999999999877444  4567776  5677 999999999999999999987755  444544433

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.54  E-value=4.3e-05  Score=62.27  Aligned_cols=93  Identities=10%  Similarity=0.169  Sum_probs=64.8

Q ss_pred             ccCccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCC-CCCc-cccccCCC----CCCCEEEccCCC-CCCCC
Q psy5270          16 EIPPGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMN-RLSS-LPRGFGAF----PVLEVLDLTYNN-LNEQS   87 (352)
Q Consensus        16 ~ip~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N-~l~~-ip~~~~~l----~~L~~L~Ls~N~-l~g~~   87 (352)
                      .+|.....--.|++||++++.++.. -..+..+++|+.|+|++| +++. --..++.+    ++|+.|+|++|. ++. .
T Consensus        52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD-~  130 (176)
T 3e4g_A           52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD-K  130 (176)
T ss_dssp             GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH-H
T ss_pred             cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH-H
Confidence            4565432224699999999998722 245788999999999998 4772 12234443    479999999985 765 2


Q ss_pred             CCCccccCccCcEEEccCCc-cc
Q psy5270          88 LPGNFFMLETLRALYLGDND-FE  109 (352)
Q Consensus        88 ~p~~~~~l~~L~~L~l~~N~-l~  109 (352)
                      -=..+..+++|++|+++++. ++
T Consensus       131 Gl~~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          131 GIIALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             HHHHGGGCTTCCEEEEESCTTCC
T ss_pred             HHHHHhcCCCCCEEECCCCCCCC
Confidence            22356788999999998875 44

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.50  E-value=3.2e-05  Score=63.02  Aligned_cols=78  Identities=9%  Similarity=0.146  Sum_probs=38.3

Q ss_pred             CCcEEEccCCCCCcc-ccccCCCCCCCEEEccCCC-CCCCCCCCccccC----ccCcEEEccCCc-cc--cchhhccCcc
Q psy5270          49 KLRILNLGMNRLSSL-PRGFGAFPVLEVLDLTYNN-LNEQSLPGNFFML----ETLRALYLGDND-FE--VLPAEIGNLK  119 (352)
Q Consensus        49 ~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~Ls~N~-l~g~~~p~~~~~l----~~L~~L~l~~N~-l~--~ip~~~~nl~  119 (352)
                      +|+.||++++.++.. -..+..+++|+.|+|++|. ++. .-=..++.+    ++|++|+|+++. ++  ++ ..+.+++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD-~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~  139 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED-GCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFR  139 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH-HHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH-HHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCC
Confidence            466666666665511 1224556666666666664 432 111123332    246666666653 55  23 2344555


Q ss_pred             cHHHHHHhc
Q psy5270         120 NLQIILETF  128 (352)
Q Consensus       120 ~L~~L~l~~  128 (352)
                      +|+.|+++.
T Consensus       140 ~L~~L~L~~  148 (176)
T 3e4g_A          140 NLKYLFLSD  148 (176)
T ss_dssp             TCCEEEEES
T ss_pred             CCCEEECCC
Confidence            555554443

>1cc1_S Hydrogenase (small subunit); NI-Fe-Se hydrogenase, oxidoreductase; 2.15A {Desulfomicrobium baculatum} SCOP: e.19.1.1

Probab=97.50  E-value=3.3e-05  Score=67.47  Aligned_cols=63  Identities=17%  Similarity=0.339  Sum_probs=52.8

Q ss_pred             ccCCceeeeccccccCCccccc--ccccccCCCccc-----cc-ceecCCCCCCHHHHHHHHHHHHHHHHh
Q psy5270         280 MLEPRWVISMGSCANGGGYYHY--SYSVVRGCDRII-----PV-DIYVPGCPPTAEALMYGILQLQKKVKR  342 (352)
Q Consensus       280 l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-----~~-~~~~~gcpp~~~~~~~~~~~~~~~~~~  342 (352)
                      ...+.+.+..|.|...+|++..  ++....|++.++     ++ ++++|||||.|.+++.+|+++..++..
T Consensus       114 ~~~ak~VIAvGtCA~~GGI~a~~~n~t~~~gv~~vl~~~~~~~p~i~IPGCPP~Pe~i~~~L~~l~~~~~~  184 (283)
T 1cc1_S          114 APKSLATVAVGTCSAYGGIPAAEGNVTGSKSVRDFFADEKIEKLLVNVPGCPPHPDWMVGTLVAAWSHVLN  184 (283)
T ss_dssp             GGGSSEEEEESHHHHHCTGGGSTTCCSCEECHHHHHHHHTCCCCEEEECCSSCCHHHHHHHHHHHHHHHHS
T ss_pred             hccCCEEEEEeeccccCCcCCCCCCCcccccHHHHhhcccCCCceEEeeCCCCCHHHHHHHHHHHhhhhhH
Confidence            3678899999999999999876  455667888775     66 899999999999999999997776654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.47  E-value=0.00021  Score=55.24  Aligned_cols=55  Identities=36%  Similarity=0.445  Sum_probs=42.8

Q ss_pred             cEEEccCCCCC--ccccccCCCCCCCEEEccCCCCCCCCCCC-ccccCccCcEEEccCCccc
Q psy5270          51 RILNLGMNRLS--SLPRGFGAFPVLEVLDLTYNNLNEQSLPG-NFFMLETLRALYLGDNDFE  109 (352)
Q Consensus        51 ~~L~L~~N~l~--~ip~~~~~l~~L~~L~Ls~N~l~g~~~p~-~~~~l~~L~~L~l~~N~l~  109 (352)
                      ..++.++++++  .+|..+.  ++|+.|+|++|+|+.  +|. .|..+++|++|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~--l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTA--LPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSS--CCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCc--cChhhhhhccccCEEEecCCCee
Confidence            47788888888  8886543  368889999999885  444 5677888999999998876

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.33  E-value=0.0008  Score=61.77  Aligned_cols=118  Identities=15%  Similarity=0.241  Sum_probs=79.9

Q ss_pred             CccEEEeeCCcCcccCc-cccCCCCCCEEEccCCcCcccc-cccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEcc
Q psy5270           3 YITRITLSHNKLKEIPP-GLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDLT   79 (352)
Q Consensus         3 ~L~~L~Ls~N~l~~ip~-~l~~l~~L~~L~L~~N~l~~ip-~~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls   79 (352)
                      .|+.+.+..+ ++.++. .+.+++.|+.+.+..+ ++.|. ..+.++.+|+.+.+.. +++.++. .|.++++|+.+.+.
T Consensus       218 ~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~  294 (379)
T 4h09_A          218 NLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMD  294 (379)
T ss_dssp             SCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEEC
T ss_pred             ccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccccccccccccccccc
Confidence            4555555433 444543 4677888888888765 55664 3677788888888854 4666655 37788888888888


Q ss_pred             CCCCCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHH
Q psy5270          80 YNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIIL  125 (352)
Q Consensus        80 ~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~  125 (352)
                      .+.++. .-...|.++.+|+.+.+..+ ++.|+. +|.++++|+.+.
T Consensus       295 ~~~i~~-I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~  339 (379)
T 4h09_A          295 NSAIET-LEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTIS  339 (379)
T ss_dssp             CTTCCE-ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCC
T ss_pred             ccccce-ehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEE
Confidence            877764 22457788888888888654 666654 677777776554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.31  E-value=0.00088  Score=61.95  Aligned_cols=99  Identities=17%  Similarity=0.338  Sum_probs=46.1

Q ss_pred             ccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEccCCCCCCCCCCCccccCccC
Q psy5270          21 LANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETL   98 (352)
Q Consensus        21 l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L   98 (352)
                      |.+++.|+.+.+..+.. .| ...|.++++|+.+.+. +.++.|+.. |.++++|+.+++..+ ++. .-...|.++.+|
T Consensus       261 F~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~-I~~~aF~~C~~L  336 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQ-ILDDAFAGCEQL  336 (394)
T ss_dssp             TTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTC
T ss_pred             eeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccE-ehHhHhhCCCCC
Confidence            44555566555544322 22 2244555555555553 344444432 455555555555433 321 112345555555


Q ss_pred             cEEEccCCccccchh-hccCcccHHHH
Q psy5270          99 RALYLGDNDFEVLPA-EIGNLKNLQII  124 (352)
Q Consensus        99 ~~L~l~~N~l~~ip~-~~~nl~~L~~L  124 (352)
                      +.+.+..+ ++.|+. +|.++++|+.+
T Consensus       337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i  362 (394)
T 4gt6_A          337 ERIAIPSS-VTKIPESAFSNCTALNNI  362 (394)
T ss_dssp             CEEEECTT-CCBCCGGGGTTCTTCCEE
T ss_pred             CEEEECcc-cCEEhHhHhhCCCCCCEE
Confidence            55555432 444433 45555554433

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.29  E-value=9.6e-05  Score=61.32  Aligned_cols=108  Identities=19%  Similarity=0.199  Sum_probs=61.4

Q ss_pred             CCccEEEeeCC-cCc-c----cCccccCCCCCCEEEccCCcCc-----ccccccCCCCCCcEEEccCCCCC-----cccc
Q psy5270           2 LYITRITLSHN-KLK-E----IPPGLANLVNLEILTLFNNQIE-----TLPTSLSSLPKLRILNLGMNRLS-----SLPR   65 (352)
Q Consensus         2 ~~L~~L~Ls~N-~l~-~----ip~~l~~l~~L~~L~L~~N~l~-----~ip~~l~~L~~L~~L~L~~N~l~-----~ip~   65 (352)
                      +.|+.|+|++| +|. +    |-..+..-+.|+.|+|++|++.     .|-..+..-+.|+.|+|++|.|+     .|-+
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~  120 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR  120 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence            35777777764 664 1    3344555567777777777776     12334445566777777777776     1334


Q ss_pred             ccCCCCCCCEEEccCCC---CCC---CCCCCccccCccCcEEEccCCccc
Q psy5270          66 GFGAFPVLEVLDLTYNN---LNE---QSLPGNFFMLETLRALYLGDNDFE  109 (352)
Q Consensus        66 ~~~~l~~L~~L~Ls~N~---l~g---~~~p~~~~~l~~L~~L~l~~N~l~  109 (352)
                      .+..=+.|+.|+|++|.   +..   ..+-..+..-++|+.|+++.|...
T Consensus       121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            44445567777777543   221   001122333456777777665543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.16  E-value=0.0012  Score=60.99  Aligned_cols=114  Identities=18%  Similarity=0.166  Sum_probs=47.4

Q ss_pred             CCccEEEeeCCcCcccC-ccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEcc
Q psy5270           2 LYITRITLSHNKLKEIP-PGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDLT   79 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip-~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls   79 (352)
                      +.++.+.+..+.. .++ ..|.++..++......+.+.  ...+..+.+|+.+.+..+ ++.|++ .|.++++|+.+++.
T Consensus       253 ~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp  328 (394)
T 4fs7_A          253 TDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLP  328 (394)
T ss_dssp             SSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCC
T ss_pred             ccceeEEcCCCcc-eeeccccccccccceeccCceeec--cccccccccccccccccc-cceechhhhcCCCCCCEEEeC
Confidence            4566666655432 222 23444555555544433211  113344444444444332 334432 24444445544443


Q ss_pred             CCCCCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHH
Q psy5270          80 YNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQ  122 (352)
Q Consensus        80 ~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~  122 (352)
                      .+ ++. .-...|.++++|+.+++..| ++.|+. +|.++.+|+
T Consensus       329 ~~-v~~-I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~  369 (394)
T 4fs7_A          329 YL-VEE-IGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK  369 (394)
T ss_dssp             TT-CCE-ECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred             Cc-ccE-EhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence            22 321 11224444444555444433 333332 344444443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.11  E-value=0.00077  Score=62.34  Aligned_cols=117  Identities=15%  Similarity=0.260  Sum_probs=84.4

Q ss_pred             CCccEEEeeCCcCcccCc-cccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEc
Q psy5270           2 LYITRITLSHNKLKEIPP-GLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDL   78 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~-~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~L   78 (352)
                      +.|+.+++..+. ..|.. .|.++++|+.+.+. +.++.|+. .|.++++|+.+++..+ ++.|.. .|.++++|+.+.+
T Consensus       265 ~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i  341 (394)
T 4gt6_A          265 AYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI  341 (394)
T ss_dssp             SSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred             ccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence            567777776543 35554 47889999999996 55777765 7889999999999864 777865 5899999999999


Q ss_pred             cCCCCCCCCCC-CccccCccCcEEEccCCccccchhhccCcccHHHHHH
Q psy5270          79 TYNNLNEQSLP-GNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILE  126 (352)
Q Consensus        79 s~N~l~g~~~p-~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l  126 (352)
                      ..+ ++.  |+ ..|.++++|+.+++.++... + .++....+|+.+.+
T Consensus       342 p~s-v~~--I~~~aF~~C~~L~~i~~~~~~~~-~-~~~~~~~~L~~i~i  385 (394)
T 4gt6_A          342 PSS-VTK--IPESAFSNCTALNNIEYSGSRSQ-W-NAISTDSGLQNLPV  385 (394)
T ss_dssp             CTT-CCB--CCGGGGTTCTTCCEEEESSCHHH-H-HTCBCCCCC-----
T ss_pred             Ccc-cCE--EhHhHhhCCCCCCEEEECCceee-h-hhhhccCCCCEEEe
Confidence            755 553  44 57999999999999987643 1 34555666665543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.04  E-value=0.0026  Score=58.32  Aligned_cols=104  Identities=14%  Similarity=0.126  Sum_probs=75.7

Q ss_pred             ccccCCCCCCEEEccCCcCcccc-cccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEccCCCCCCCCCCCccccCc
Q psy5270          19 PGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDLTYNNLNEQSLPGNFFMLE   96 (352)
Q Consensus        19 ~~l~~l~~L~~L~L~~N~l~~ip-~~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~   96 (352)
                      ..+..+.+|+.+.+..+ +..++ ..+.++.+|+.+.+..+ ++.|.. .|.++.+|+.+.+..+ ++. .-...|.+++
T Consensus       211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~-i~~~aF~~c~  286 (379)
T 4h09_A          211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKT-VPYLLCSGCS  286 (379)
T ss_dssp             TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSE-ECTTTTTTCT
T ss_pred             cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-cee-cccccccccc
Confidence            34667788888888655 44453 46788889999998765 667754 4778889999988654 432 1234678889


Q ss_pred             cCcEEEccCCccccchh-hccCcccHHHHHH
Q psy5270          97 TLRALYLGDNDFEVLPA-EIGNLKNLQIILE  126 (352)
Q Consensus        97 ~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l  126 (352)
                      +|+.+.+.++.++.|+. +|.++.+|+.+.+
T Consensus       287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l  317 (379)
T 4h09_A          287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTL  317 (379)
T ss_dssp             TCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccccccccccceehhhhhcCCCCCCEEEc
Confidence            99999999888887765 7888887765543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.20  E-value=0.0016  Score=53.86  Aligned_cols=87  Identities=15%  Similarity=0.199  Sum_probs=60.5

Q ss_pred             ccCCCCCCEEEccCC-cCc-----ccccccCCCCCCcEEEccCCCCC-----ccccccCCCCCCCEEEccCCCCCCC---
Q psy5270          21 LANLVNLEILTLFNN-QIE-----TLPTSLSSLPKLRILNLGMNRLS-----SLPRGFGAFPVLEVLDLTYNNLNEQ---   86 (352)
Q Consensus        21 l~~l~~L~~L~L~~N-~l~-----~ip~~l~~L~~L~~L~L~~N~l~-----~ip~~~~~l~~L~~L~Ls~N~l~g~---   86 (352)
                      +.+-+.|++|+|++| ++.     .+-+.+..-+.|+.|+|++|+++     .|-+.+..=+.|+.|+|+.|.|+..   
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            345578999999985 776     23456677788999999999997     2334444557899999999998641   


Q ss_pred             CCCCccccCccCcEEEccCCc
Q psy5270          87 SLPGNFFMLETLRALYLGDND  107 (352)
Q Consensus        87 ~~p~~~~~l~~L~~L~l~~N~  107 (352)
                      .+-+.+..-+.|++|+|++|.
T Consensus       117 ala~aL~~N~tL~~L~L~n~~  137 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQR  137 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHHhhCCceeEEECCCCc
Confidence            111223334569999998653

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=95.82  E-value=0.0053  Score=53.06  Aligned_cols=79  Identities=28%  Similarity=0.427  Sum_probs=67.1

Q ss_pred             CcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccc
Q psy5270         117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD  196 (352)
Q Consensus       117 nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~  196 (352)
                      |+.....+.....|.|..+..|.|++++|..+..+.+....|+.+|.++.++.+.++.++..+    +++++.+.|+++.
T Consensus       116 Nl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~~~~~~~~~Y~asKaal~~ltr~lA~ela~~----gIrVN~V~PG~i~  191 (254)
T 4fn4_A          116 NLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIRGGFAGAPYTVAKHGLIGLTRSIAAHYGDQ----GIRAVAVLPGTVK  191 (254)
T ss_dssp             HTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCSSSSCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBC
T ss_pred             HhHHHHHHHHHHHHHHHHcCCcEEEEEechhhcCCCCCChHHHHHHHHHHHHHHHHHHHhhhh----CeEEEEEEeCCCC
Confidence            444555555666899999889999999999999999999999999999999999999888654    7999999999887


Q ss_pred             cCC
Q psy5270         197 TGL  199 (352)
Q Consensus       197 ~~~  199 (352)
                      ++.
T Consensus       192 T~~  194 (254)
T 4fn4_A          192 TNI  194 (254)
T ss_dssp             SSC
T ss_pred             Ccc
Confidence            764

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=95.11  E-value=0.013  Score=50.38  Aligned_cols=80  Identities=30%  Similarity=0.440  Sum_probs=65.9

Q ss_pred             CcccHHHHHHhcchhhHhhc-CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc
Q psy5270         117 NLKNLQIILETFLPDMMEKN-RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV  195 (352)
Q Consensus       117 nl~~L~~L~l~~~p~~~~~~-~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~  195 (352)
                      |+.....+.....|.|..+. .|.|++++|..+..+.+....|+.+|.++.++.+.++.++..+    +++++.+.|+++
T Consensus       110 Nl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~g~~~~~~Y~asKaav~~ltr~lA~Ela~~----gIrVNaV~PG~i  185 (247)
T 4hp8_A          110 NLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQGGIRVPSYTAAKHGVAGLTKLLANEWAAK----GINVNAIAPGYI  185 (247)
T ss_dssp             HTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCSSCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSB
T ss_pred             HhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCCCCCCChHHHHHHHHHHHHHHHHHHHHhhc----CeEEEEEeeCCC
Confidence            44444455555678888764 6999999999999999999999999999999999999888654    799999999998


Q ss_pred             ccCCc
Q psy5270         196 DTGLC  200 (352)
Q Consensus       196 ~~~~l  200 (352)
                      .++..
T Consensus       186 ~T~~~  190 (247)
T 4hp8_A          186 ETNNT  190 (247)
T ss_dssp             CSGGG
T ss_pred             CCcch
Confidence            77643

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=94.07  E-value=0.028  Score=48.48  Aligned_cols=79  Identities=24%  Similarity=0.355  Sum_probs=64.9

Q ss_pred             CcccHHHHHHhcchhhHhh-cCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc
Q psy5270         117 NLKNLQIILETFLPDMMEK-NRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV  195 (352)
Q Consensus       117 nl~~L~~L~l~~~p~~~~~-~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~  195 (352)
                      |+.....+.....|.|..+ ..|.|++++|..+..+.|....|+.+|.++.++.+.++.++..+    +++++.+.|+++
T Consensus       117 Nl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~~~~~~~~Y~asKaal~~ltr~lA~ela~~----gIrVN~V~PG~i  192 (255)
T 4g81_D          117 NLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQAARPTVAPYTAAKGGIKMLTCSMAAEWAQF----NIQTNAIGPGYI  192 (255)
T ss_dssp             HTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSBCTTCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSB
T ss_pred             HhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcCCCCCchhHHHHHHHHHHHHHHHHHHhccc----CeEEEEEeeCCC
Confidence            3444455555667888765 46899999999999999999999999999999999999888654    799999999988


Q ss_pred             ccCC
Q psy5270         196 DTGL  199 (352)
Q Consensus       196 ~~~~  199 (352)
                      .++.
T Consensus       193 ~T~~  196 (255)
T 4g81_D          193 LTDM  196 (255)
T ss_dssp             CCGG
T ss_pred             CCch
Confidence            7754

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=93.83  E-value=0.037  Score=47.32  Aligned_cols=78  Identities=29%  Similarity=0.347  Sum_probs=60.7

Q ss_pred             cccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccccc
Q psy5270         118 LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT  197 (352)
Q Consensus       118 l~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~  197 (352)
                      +.....+.....|.|. +..|.|++++|..+..+.+....|+.+|.++.++.+.++.++..+    +++++.+.|+++.+
T Consensus       108 l~g~~~~~~~~~p~m~-~~~G~IVnisS~~~~~~~~~~~~Y~asKaav~~ltr~lA~Ela~~----gIrVNaV~PG~i~T  182 (242)
T 4b79_A          108 LSAAMLASQLARPLLA-QRGGSILNIASMYSTFGSADRPAYSASKGAIVQLTRSLACEYAAE----RIRVNAIAPGWIDT  182 (242)
T ss_dssp             THHHHHHHHHHHHHHH-HHCEEEEEECCGGGTSCCSSCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCC
T ss_pred             hHHHHHHHHHHHHHHH-HcCCeEEEEeeccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhhc----CeEEEEEEeCCCCC
Confidence            3333333334456554 456999999999999999999999999999999999999888654    79999999999887


Q ss_pred             CCc
Q psy5270         198 GLC  200 (352)
Q Consensus       198 ~~l  200 (352)
                      +..
T Consensus       183 ~m~  185 (242)
T 4b79_A          183 PLG  185 (242)
T ss_dssp             C--
T ss_pred             hhh
Confidence            653

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=93.45  E-value=0.039  Score=47.75  Aligned_cols=78  Identities=33%  Similarity=0.427  Sum_probs=62.8

Q ss_pred             cccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccccc
Q psy5270         118 LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT  197 (352)
Q Consensus       118 l~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~  197 (352)
                      +.....+.....|.|. ...|.|++++|..+..+.|....|+.+|.++.++.+.++.++..+    +++++.+.|+++.+
T Consensus       114 l~g~~~~~~~~~p~m~-~~~G~IVnisS~~~~~~~~~~~~Y~asKaav~~ltr~lA~ela~~----gIrVN~V~PG~i~T  188 (258)
T 4gkb_A          114 LIHYYAMAHYCVPHLK-ATRGAIVNISSKTAVTGQGNTSGYCASKGAQLALTREWAVALREH----GVRVNAVIPAEVMT  188 (258)
T ss_dssp             THHHHHHHHHHHHHHH-HHTCEEEEECCTHHHHCCSSCHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECSBCC
T ss_pred             hHHHHHHHHHHHHHHH-hcCCeEEEEeehhhccCCCCchHHHHHHHHHHHHHHHHHHHhccc----CeEEEEEecCCCCC
Confidence            3344444445567664 446999999999999999999999999999999999999888654    78999999999887


Q ss_pred             CCc
Q psy5270         198 GLC  200 (352)
Q Consensus       198 ~~l  200 (352)
                      +..
T Consensus       189 ~~~  191 (258)
T 4gkb_A          189 PLY  191 (258)
T ss_dssp             SCC
T ss_pred             hhH
Confidence            654

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=93.09  E-value=0.051  Score=47.08  Aligned_cols=79  Identities=23%  Similarity=0.408  Sum_probs=63.7

Q ss_pred             CcccHHHHHHhcchhhHhhcCceEeeccccccccCCCC-ccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc
Q psy5270         117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPN-LVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV  195 (352)
Q Consensus       117 nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~-l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~  195 (352)
                      |+.....+.....|.|..+..|.|+.++|..+..+.|. ...|+.+|.++.++.+.++.++..+    +++++.+.|+++
T Consensus       111 Nl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~~~~~~~~~~~~Y~asKaal~~lt~~lA~Ela~~----gIrVN~V~PG~i  186 (261)
T 4h15_A          111 NLFAAVRLDRQLVPDMVARGSGVVVHVTSIQRVLPLPESTTAYAAAKAALSTYSKAMSKEVSPK----GVRVVRVSPGWI  186 (261)
T ss_dssp             HTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTTCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCB
T ss_pred             HhHHHHHHHHhhchhhhhcCCceEEEEEehhhccCCCCccHHHHHHHHHHHHHHHHHHHHhhhh----CeEEEEEeCCCc
Confidence            34444555556688998888999999999988887774 5778999999999999998887653    799999999988


Q ss_pred             ccCC
Q psy5270         196 DTGL  199 (352)
Q Consensus       196 ~~~~  199 (352)
                      .++.
T Consensus       187 ~T~~  190 (261)
T 4h15_A          187 ETEA  190 (261)
T ss_dssp             CCHH
T ss_pred             CCcc
Confidence            7653

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=92.09  E-value=0.11  Score=44.57  Aligned_cols=76  Identities=22%  Similarity=0.296  Sum_probs=60.2

Q ss_pred             cccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccccc
Q psy5270         118 LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT  197 (352)
Q Consensus       118 l~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~  197 (352)
                      +.....+.....|.|.+ ..|.|++++|..+..+.|....|+.+|.++.++.+.++.++..     +++++.+.|+++.+
T Consensus       107 l~g~~~~~~~~~~~m~~-~~G~IInisS~~~~~~~~~~~~Y~asKaal~~ltk~lA~ela~-----~IrVN~I~PG~i~t  180 (247)
T 3ged_A          107 LKAPYELSRLCRDELIK-NKGRIINIASTRAFQSEPDSEAYASAKGGIVALTHALAMSLGP-----DVLVNCIAPGWINV  180 (247)
T ss_dssp             THHHHHHHHHHHHHHHH-TTCEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHTT-----TSEEEEEEECSBCC
T ss_pred             hHHHHHHHHHHHHHHhh-cCCcEEEEeecccccCCCCCHHHHHHHHHHHHHHHHHHHHHCC-----CCEEEEEecCcCCC
Confidence            34444444445666654 4599999999999999999999999999999999999888742     68999999998876


Q ss_pred             CC
Q psy5270         198 GL  199 (352)
Q Consensus       198 ~~  199 (352)
                      +.
T Consensus       181 ~~  182 (247)
T 3ged_A          181 TE  182 (247)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=89.55  E-value=0.1  Score=45.44  Aligned_cols=78  Identities=26%  Similarity=0.350  Sum_probs=60.2

Q ss_pred             CcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccc
Q psy5270         117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD  196 (352)
Q Consensus       117 nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~  196 (352)
                      |+.....+.....|.|.  ..|.|+.++|..+..+.|....|+.+|.++.++.+.++.++..    .+++++.+.|+++.
T Consensus       134 Nl~g~~~~~~~~~p~m~--~~G~IInisS~~~~~~~~~~~~Y~asKaav~~ltr~lA~Ela~----~gIrVN~V~PG~i~  207 (273)
T 4fgs_A          134 NVKGVLFTVQKALPLLA--RGSSVVLTGSTAGSTGTPAFSVYAASKAALRSFARNWILDLKD----RGIRINTLSPGPTE  207 (273)
T ss_dssp             HTHHHHHHHHHHTTTEE--EEEEEEEECCGGGGSCCTTCHHHHHHHHHHHHHHHHHHHHTTT----SCEEEEEEEECSBC
T ss_pred             HhHHHHHHHHHHHHHHh--hCCeEEEEeehhhccCCCCchHHHHHHHHHHHHHHHHHHHhcc----cCeEEEEEeeCCCC
Confidence            34444444455577664  3588999999999999999999999999999999999887754    37899999999887


Q ss_pred             cCCc
Q psy5270         197 TGLC  200 (352)
Q Consensus       197 ~~~l  200 (352)
                      ++..
T Consensus       208 T~~~  211 (273)
T 4fgs_A          208 TTGL  211 (273)
T ss_dssp             C---
T ss_pred             ChhH
Confidence            7654

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=86.38  E-value=0.36  Score=41.36  Aligned_cols=61  Identities=21%  Similarity=0.218  Sum_probs=53.1

Q ss_pred             cCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCc
Q psy5270         136 NRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLC  200 (352)
Q Consensus       136 ~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l  200 (352)
                      ..|.|+.++|..+..+.|....|+.+|.++.++.+.++.++..+    +++++.+.|+++.+...
T Consensus       138 ~~G~IVnisS~~~~~~~~~~~~Y~asKaal~~ltr~lA~Ela~~----gIrVN~V~PG~i~T~~~  198 (256)
T 4fs3_A          138 EGGSIVATTYLGGEFAVQNYNVMGVAKASLEANVKYLALDLGPD----NIRVNAISAGPIRTLSA  198 (256)
T ss_dssp             TCEEEEEEECGGGTSCCTTTHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCCCSGGG
T ss_pred             cCCEEEEEeccccccCcccchhhHHHHHHHHHHHHHHHHHhCcc----CeEEEEEecCCCCChhh
Confidence            46899999999999999999999999999999999998887653    79999999998877543

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=85.03  E-value=0.69  Score=39.80  Aligned_cols=74  Identities=35%  Similarity=0.560  Sum_probs=58.8

Q ss_pred             HHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270         122 QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL  199 (352)
Q Consensus       122 ~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~  199 (352)
                      ..+.....|.+.....|.|+.++|..+..+.+....|+.+|.++.++.+.+..++..    .+++++.+.|+++.++.
T Consensus       123 ~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~----~gi~vn~v~PG~v~T~~  196 (266)
T 3p19_A          123 LNGMQAVLAPMKARNCGTIINISSIAGKKTFPDHAAYCGTKFAVHAISENVREEVAA----SNVRVMTIAPSAVKTEL  196 (266)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTCEEEEEEECSBSSSG
T ss_pred             HHHHHHHHHHHHhcCCcEEEEEcChhhCCCCCCCchHHHHHHHHHHHHHHHHHHhcc----cCcEEEEEeeCccccch
Confidence            333444567777777899999999999988888889999999999998888777643    47889999998876654

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=83.94  E-value=0.79  Score=39.75  Aligned_cols=79  Identities=30%  Similarity=0.440  Sum_probs=60.7

Q ss_pred             cccHHHHHHhcchhhHhhc-CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccc
Q psy5270         118 LKNLQIILETFLPDMMEKN-RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD  196 (352)
Q Consensus       118 l~~L~~L~l~~~p~~~~~~-~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~  196 (352)
                      +.....+.....|.|..+. .|.|+.++|..+..+.+....|+.+|.++.++.+.+..++..    .+++++.+.|+++.
T Consensus       137 ~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~----~gI~vn~v~PG~v~  212 (286)
T 3uve_A          137 LAGVWKTVKAGVPHMIAGGRGGSIILTSSVGGLKAYPHTGHYVAAKHGVVGLMRAFGVELGQ----HMIRVNSVHPTHVK  212 (286)
T ss_dssp             THHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEESSBS
T ss_pred             hHHHHHHHHHHHHHHHhCCCCcEEEEECchhhccCCCCccHHHHHHHHHHHHHHHHHHHhcc----cCeEEEEEecCccc
Confidence            3333444444567776654 689999999999988898889999999999999888877643    37899999999887


Q ss_pred             cCCc
Q psy5270         197 TGLC  200 (352)
Q Consensus       197 ~~~l  200 (352)
                      ++..
T Consensus       213 T~~~  216 (286)
T 3uve_A          213 TPML  216 (286)
T ss_dssp             STTT
T ss_pred             CCcc
Confidence            7543

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=83.69  E-value=1  Score=38.02  Aligned_cols=74  Identities=19%  Similarity=0.220  Sum_probs=57.3

Q ss_pred             HHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270         122 QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL  199 (352)
Q Consensus       122 ~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~  199 (352)
                      ..+.....|.|..+..+.|+.++|..+..+.+....|+.+|..+.++.+.+..++..    .+++++.+.|+++.+..
T Consensus       111 ~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~----~gi~v~~v~PG~v~T~~  184 (244)
T 1zmo_A          111 ILLLQSAIAPLRAAGGASVIFITSSVGKKPLAYNPLYGPARAATVALVESAAKTLSR----DGILLYAIGPNFFNNPT  184 (244)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEECCGGGTSCCTTCTTHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEESSBCBTT
T ss_pred             HHHHHHHHHHHHHcCCcEEEEECChhhCCCCCCchHHHHHHHHHHHHHHHHHHHHhh----cCcEEEEEeeCCCcCCc
Confidence            333344466676666789999999988888888889999999999988888776643    36889999998876654

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=83.54  E-value=0.55  Score=40.96  Aligned_cols=77  Identities=40%  Similarity=0.563  Sum_probs=60.2

Q ss_pred             cccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccccc
Q psy5270         118 LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT  197 (352)
Q Consensus       118 l~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~  197 (352)
                      +.....+.....|.|..+..|.|+.++|..+..+.+....|+.+|.++.++.+.+..++.    -.+++++.+.|+++.+
T Consensus       148 ~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~----~~gIrvn~v~PG~v~T  223 (287)
T 3rku_A          148 VTALINITQAVLPIFQAKNSGDIVNLGSIAGRDAYPTGSIYCASKFAVGAFTDSLRKELI----NTKIRVILIAPGLVET  223 (287)
T ss_dssp             THHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHTT----TSSCEEEEEEESCEES
T ss_pred             HHHHHHHHHHHHHHHHhcCCCeEEEECChhhcCCCCCCchHHHHHHHHHHHHHHHHHHhh----hcCCEEEEEeCCcCcC
Confidence            333344444556777777789999999999998888889999999999999888876653    3478999999988766


Q ss_pred             C
Q psy5270         198 G  198 (352)
Q Consensus       198 ~  198 (352)
                      +
T Consensus       224 ~  224 (287)
T 3rku_A          224 E  224 (287)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=83.52  E-value=0.6  Score=39.67  Aligned_cols=78  Identities=24%  Similarity=0.471  Sum_probs=61.1

Q ss_pred             cccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccccc
Q psy5270         118 LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT  197 (352)
Q Consensus       118 l~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~  197 (352)
                      +.....+.....|.|..+..|.|+.++|..+..+.+....|+.+|.++.++.+.+..++..    .+.+++.+.|+.+.+
T Consensus       115 ~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~l~~~la~e~~~----~gi~vn~v~PG~v~T  190 (248)
T 3op4_A          115 LTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAKAGVIGFTKSMAREVAS----RGVTVNTVAPGFIET  190 (248)
T ss_dssp             THHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBSS
T ss_pred             hHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHH----hCeEEEEEeeCCCCC
Confidence            3333444445567777777899999999888888888889999999999999888877643    378899999998876


Q ss_pred             CC
Q psy5270         198 GL  199 (352)
Q Consensus       198 ~~  199 (352)
                      +.
T Consensus       191 ~~  192 (248)
T 3op4_A          191 DM  192 (248)
T ss_dssp             TT
T ss_pred             ch
Confidence            54

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=83.19  E-value=0.68  Score=39.45  Aligned_cols=76  Identities=21%  Similarity=0.257  Sum_probs=54.0

Q ss_pred             HHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCcee-ecccCcccccCC
Q psy5270         121 LQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF-TSIFPFMVDTGL  199 (352)
Q Consensus       121 L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~-~g~~P~~~~~~~  199 (352)
                      ...+.....|.+..+..|.|+.++|..+..+.+....|+.+|.++.++.+.+..++..    .++++ +.+.|+.+.++.
T Consensus       118 ~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gi~v~n~v~PG~v~T~~  193 (252)
T 3h7a_A          118 GFVSGRESARLMLAHGQGKIFFTGATASLRGGSGFAAFASAKFGLRAVAQSMARELMP----KNIHVAHLIIDSGVDTAW  193 (252)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEEEEEGGGTCCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEEC-------
T ss_pred             HHHHHHHHHHHHHhcCCcEEEEECCHHHcCCCCCCccHHHHHHHHHHHHHHHHHHhhh----cCCEEEEEecCCccCChh
Confidence            3334444567777777789999999999888888899999999999998888777643    36888 788998887654


Q ss_pred             c
Q psy5270         200 C  200 (352)
Q Consensus       200 l  200 (352)
                      .
T Consensus       194 ~  194 (252)
T 3h7a_A          194 V  194 (252)
T ss_dssp             -
T ss_pred             h
Confidence            3

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=82.77  E-value=0.74  Score=39.28  Aligned_cols=77  Identities=30%  Similarity=0.323  Sum_probs=59.7

Q ss_pred             cccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccccc
Q psy5270         118 LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT  197 (352)
Q Consensus       118 l~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~  197 (352)
                      +.....+.....|.|..+..+.|+.++|..+..+.+....|..+|.++.++.+.+..++..    .+++++.+.|+.+.+
T Consensus       120 ~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~----~gi~vn~v~PG~v~T  195 (256)
T 3gaf_A          120 LFSLFRLSQLAAPHMQKAGGGAILNISSMAGENTNVRMASYGSSKAAVNHLTRNIAFDVGP----MGIRVNAIAPGAIKT  195 (256)
T ss_dssp             THHHHHHHHHHHHHHHHTTCEEEEEECCGGGTCCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECCBCC
T ss_pred             hHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHhh----hCcEEEEEEEccccC
Confidence            3333444444567777777889999999999888888889999999999998888777643    368889999987765


Q ss_pred             C
Q psy5270         198 G  198 (352)
Q Consensus       198 ~  198 (352)
                      +
T Consensus       196 ~  196 (256)
T 3gaf_A          196 D  196 (256)
T ss_dssp             H
T ss_pred             c
Confidence            4

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=82.66  E-value=0.83  Score=39.44  Aligned_cols=74  Identities=34%  Similarity=0.410  Sum_probs=58.7

Q ss_pred             HHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270         122 QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL  199 (352)
Q Consensus       122 ~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~  199 (352)
                      ..+.....|.|.....+.|+.++|..+..+.+....|+.+|.++.++.+.++.++..    .+++++.+.|+.+.++.
T Consensus       142 ~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gI~vn~v~PG~v~T~~  215 (273)
T 3uf0_A          142 WVLSRSFGTAMLAHGSGRIVTIASMLSFQGGRNVAAYAASKHAVVGLTRALASEWAG----RGVGVNALAPGYVVTAN  215 (273)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEECCGGGTSCCSSCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBCSGG
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEcchHhcCCCCCChhHHHHHHHHHHHHHHHHHHHhh----cCcEEEEEEeCCCcCCc
Confidence            333444467777777899999999999988888889999999999998888877643    37889999998876543

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=82.35  E-value=0.79  Score=39.65  Aligned_cols=78  Identities=28%  Similarity=0.384  Sum_probs=60.5

Q ss_pred             cccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccccc
Q psy5270         118 LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT  197 (352)
Q Consensus       118 l~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~  197 (352)
                      +.....+.....|.|..+..+.|+.++|..+..+.+....|+.+|.++.++.+.+..++..    .+++++.+.|+.+.+
T Consensus       131 ~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~----~gi~vn~v~PG~v~t  206 (281)
T 3s55_A          131 LTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSANFAQASYVSSKWGVIGLTKCAAHDLVG----YGITVNAVAPGNIET  206 (281)
T ss_dssp             THHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCCTTCHHHHHHHHHHHHHHHHHHHHTGG----GTEEEEEEEECSBCS
T ss_pred             hHHHHHHHHHHHHHHHHcCCCEEEEECChhhcCCCCCCchhHHHHHHHHHHHHHHHHHHhh----cCcEEEEEecCcccC
Confidence            3333344444567777777899999999999888888889999999999998888776643    378899999998876


Q ss_pred             CC
Q psy5270         198 GL  199 (352)
Q Consensus       198 ~~  199 (352)
                      +.
T Consensus       207 ~~  208 (281)
T 3s55_A          207 PM  208 (281)
T ss_dssp             TT
T ss_pred             cc
Confidence            54

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=82.20  E-value=0.85  Score=39.27  Aligned_cols=74  Identities=22%  Similarity=0.305  Sum_probs=58.9

Q ss_pred             HHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270         122 QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL  199 (352)
Q Consensus       122 ~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~  199 (352)
                      ..+.....|.|.....+.|+.++|..+..+.+....|+.+|.++.++.+.+..++..    .+++++.+.|+.+.++.
T Consensus       123 ~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gi~vn~v~PG~v~t~~  196 (271)
T 3tzq_B          123 MLMCKYAIPRLISAGGGAIVNISSATAHAAYDMSTAYACTKAAIETLTRYVATQYGR----HGVRCNAIAPGLVRTPR  196 (271)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEECCGGGTSBCSSCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECCBCCTT
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECCHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHhh----cCEEEEEEEeCCCcCcc
Confidence            334444567777777899999999988888888889999999999998888777643    36889999998887654

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=81.44  E-value=0.98  Score=38.96  Aligned_cols=75  Identities=36%  Similarity=0.440  Sum_probs=58.5

Q ss_pred             HHHHHHhcchhhHhhc-CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270         121 LQIILETFLPDMMEKN-RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL  199 (352)
Q Consensus       121 L~~L~l~~~p~~~~~~-~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~  199 (352)
                      ...+.....|.+..+. .+.|+.++|..+..+.+....|+.+|.++.++.+.+..++..    .+++++.+.|+.+.++.
T Consensus       136 ~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~----~gi~vn~v~PG~v~T~~  211 (277)
T 3tsc_A          136 TWNTVMAGAPRIIEGGRGGSIILISSAAGMKMQPFMIHYTASKHAVTGLARAFAAELGK----HSIRVNSVHPGPVNTPM  211 (277)
T ss_dssp             HHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCSSCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEESSBSSGG
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEccHhhCCCCCCchhhHHHHHHHHHHHHHHHHHhCc----cCeEEEEEEeCCCcCCc
Confidence            3334444567776654 689999999999888888889999999999998888877643    36889999998887654

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=81.37  E-value=0.61  Score=40.02  Aligned_cols=71  Identities=23%  Similarity=0.409  Sum_probs=57.2

Q ss_pred             HHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270         124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG  198 (352)
Q Consensus       124 L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~  198 (352)
                      +.....|.+..+..+.|+.++|..+..+.+....|+.+|.++.++.+.+..++..    .+++++.+.|+.+.++
T Consensus       125 ~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gi~vn~v~PG~v~t~  195 (265)
T 3lf2_A          125 PVRAFLPQLESRADAAIVCVNSLLASQPEPHMVATSAARAGVKNLVRSMAFEFAP----KGVRVNGILIGLVESG  195 (265)
T ss_dssp             HHHHHHHHHTTSTTEEEEEEEEGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBCCH
T ss_pred             HHHHHHHHhhccCCeEEEEECCcccCCCCCCchhhHHHHHHHHHHHHHHHHHhcc----cCeEEEEEEeCcCcCc
Confidence            3334466676666789999999999888898899999999999999888877653    3789999999887664

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=81.17  E-value=0.91  Score=39.03  Aligned_cols=77  Identities=23%  Similarity=0.336  Sum_probs=59.6

Q ss_pred             cccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccccc
Q psy5270         118 LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT  197 (352)
Q Consensus       118 l~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~  197 (352)
                      +.....+.....|.|.....+.|+.++|..+..+.+....|+.+|.++.++.+.+..++..    .+++++.+.|+.+.+
T Consensus       126 ~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gI~vn~v~PG~v~T  201 (266)
T 3uxy_A          126 VEAPFRICRAAIPLMAAAGGGAIVNVASCWGLRPGPGHALYCLTKAALASLTQCMGMDHAP----QGIRINAVCPNEVNT  201 (266)
T ss_dssp             THHHHHHHHHHHHHHHHHTCEEEEEECCSBTTBCCTTBHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEESSBCC
T ss_pred             hHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCCCCCChHHHHHHHHHHHHHHHHHHHhhh----cCcEEEEEeeCCCcc
Confidence            3333344444567777777899999999999888888889999999999998888777643    378889999987765


Q ss_pred             C
Q psy5270         198 G  198 (352)
Q Consensus       198 ~  198 (352)
                      +
T Consensus       202 ~  202 (266)
T 3uxy_A          202 P  202 (266)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=80.94  E-value=1  Score=38.97  Aligned_cols=75  Identities=33%  Similarity=0.429  Sum_probs=58.3

Q ss_pred             HHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270         121 LQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL  199 (352)
Q Consensus       121 L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~  199 (352)
                      ...+.....|.+.....|.|+.++|..+..+.+....|+.+|.++.++.+.+..++..    .+++++.+.|+.+.++.
T Consensus       139 ~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gI~vn~v~PG~v~t~~  213 (281)
T 3v2h_A          139 SFHTIRGAIPPMKKKGWGRIINIASAHGLVASPFKSAYVAAKHGIMGLTKTVALEVAE----SGVTVNSICPGYVLTPL  213 (281)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBCC--
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECCcccccCCCCchHHHHHHHHHHHHHHHHHHHhhh----cCcEEEEEECCCCcCcc
Confidence            3334444567777777899999999999888888889999999999998888777643    36889999999887654

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=80.91  E-value=1.1  Score=39.13  Aligned_cols=74  Identities=34%  Similarity=0.476  Sum_probs=58.0

Q ss_pred             HHHHhcchhhHhhc-CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCc
Q psy5270         123 IILETFLPDMMEKN-RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLC  200 (352)
Q Consensus       123 ~L~l~~~p~~~~~~-~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l  200 (352)
                      .+.....|.+.... .+.|+.++|..+..+.+....|+.+|.++.++.+.+..++..    .+++++.+.|+++.++..
T Consensus       155 ~l~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gI~vn~v~PG~v~T~~~  229 (299)
T 3t7c_A          155 ITARVAIPHIMAGKRGGSIVFTSSIGGLRGAENIGNYIASKHGLHGLMRTMALELGP----RNIRVNIVCPSSVATPML  229 (299)
T ss_dssp             HHHHHHHHHHHHTTSCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEESCBSSTTT
T ss_pred             HHHHHHHHHHHhcCCCcEEEEECChhhccCCCCcchHHHHHHHHHHHHHHHHHHhcc----cCcEEEEEecCCccCccc
Confidence            33334456665544 689999999999988898899999999999999888877653    378999999998877543

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=80.55  E-value=1.3  Score=38.32  Aligned_cols=75  Identities=37%  Similarity=0.487  Sum_probs=58.5

Q ss_pred             HHHHHHhcchhhHhhc-CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270         121 LQIILETFLPDMMEKN-RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL  199 (352)
Q Consensus       121 L~~L~l~~~p~~~~~~-~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~  199 (352)
                      ...+.....|.|.... .+.|+.++|..+..+.+....|..+|.++.++.+.+..++..    .+++++.+.|+.+.++.
T Consensus       140 ~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~----~gi~vn~v~PG~v~t~~  215 (280)
T 3pgx_A          140 TWRTLRATVPAMIEAGNGGSIVVVSSSAGLKATPGNGHYSASKHGLTALTNTLAIELGE----YGIRVNSIHPYSVETPM  215 (280)
T ss_dssp             HHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBCSTT
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEcchhhccCCCCchhHHHHHHHHHHHHHHHHHHhhh----cCeEEEEEeeCcccCcc
Confidence            3334444567776654 688999999999988898899999999999998888777643    37899999999887654

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=80.48  E-value=0.76  Score=39.30  Aligned_cols=75  Identities=31%  Similarity=0.275  Sum_probs=58.3

Q ss_pred             HHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270         121 LQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL  199 (352)
Q Consensus       121 L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~  199 (352)
                      ...+.....|.|.....+.|+.++|..+..+.+....|+.+|.++.++.+.+..++..    .+++++.+.|+.+.++.
T Consensus       117 ~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gi~vn~v~PG~v~T~~  191 (258)
T 3oid_A          117 LLFCAQEAAKLMEKNGGGHIVSISSLGSIRYLENYTTVGVSKAALEALTRYLAVELSP----KQIIVNAVSGGAIDTDA  191 (258)
T ss_dssp             HHHHHHHHHHHHHTTTCEEEEEEEEGGGTSBCTTCHHHHHHHHHHHHHHHHHHHHTGG----GTEEEEEEEECCBCSGG
T ss_pred             HHHHHHHHHHHHHhcCCcEEEEECchhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHhh----cCcEEEEEeeCCCcChh
Confidence            3334444567777777789999999998888888889999999999998888776643    36888999998876643

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=80.31  E-value=1  Score=38.79  Aligned_cols=74  Identities=24%  Similarity=0.301  Sum_probs=58.2

Q ss_pred             HHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270         122 QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL  199 (352)
Q Consensus       122 ~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~  199 (352)
                      ..+.....|.+..+..|.|+.++|..+..+.+....|+.+|.++.++.+.++.++..    .+++++.+.|+.+.++.
T Consensus       139 ~~l~~~~~~~~~~~~~g~iV~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~----~gI~vn~v~PG~v~T~~  212 (271)
T 4ibo_A          139 FMIGREAAKRMIPRGYGKIVNIGSLTSELARATVAPYTVAKGGIKMLTRAMAAEWAQ----YGIQANAIGPGYMLTDM  212 (271)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEECCGGGTSBCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBCSGG
T ss_pred             HHHHHHHHHHHHhcCCcEEEEEccHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHhh----hCeEEEEEEeccEeCcc
Confidence            333444467777777789999999988888888889999999999998888877643    37888999998876643

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=80.22  E-value=0.88  Score=39.17  Aligned_cols=74  Identities=27%  Similarity=0.425  Sum_probs=58.6

Q ss_pred             HHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270         122 QIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL  199 (352)
Q Consensus       122 ~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~  199 (352)
                      ..+.....|.+..+..+.|+.++|..+..+.+....|+.+|.++.++.+.++.++..    .+++++.+.|+.+.++.
T Consensus       142 ~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~l~~~la~e~~~----~gi~vn~v~PG~v~T~~  215 (269)
T 4dmm_A          142 FLCSRAAAKIMLKQRSGRIINIASVVGEMGNPGQANYSAAKAGVIGLTKTVAKELAS----RGITVNAVAPGFIATDM  215 (269)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEECCHHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTCEEEEEEECCBTTSC
T ss_pred             HHHHHHHHHHHHHcCCcEEEEECchhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhh----hCcEEEEEEECCCcCcc
Confidence            333444467777777899999999988888888889999999999998888877643    36889999999887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	352
d2fug61	161	e.19.1.2 (6:15-175) NAD-quinone oxidoreductase cha	1e-27
d1yb1a_	244	c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase	1e-21
d1jtva_	285	c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroi	9e-17
d2c07a1	251	c.2.1.2 (A:54-304) beta-keto acyl carrier protein	8e-16
d1xg5a_	257	c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41	1e-15
d1xu9a_	269	c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase	1e-15
d1gz6a_	302	c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase do	5e-15
d1edoa_	244	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	9e-15
d1q7ba_	243	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	2e-14
d2bd0a1	240	c.2.1.2 (A:2-241) Bacterial sepiapterin reductase	1e-13
d1sbya1	254	c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase	2e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-04
d1zk4a1	251	c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase	1e-12
d1hdca_	254	c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydr	2e-12
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-12
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-04
d1wuis1	267	e.19.1.1 (S:1-267) Nickel-iron hydrogenase, small	7e-12
d1ydea1	250	c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase	8e-12
d2d1ya1	248	c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {T	2e-11
d1bdba_	276	c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehy	2e-11
d1uaya_	241	c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogena	2e-11
d1cc1s_	278	e.19.1.1 (S:) Nickel-iron hydrogenase, small subun	3e-11
d1yq9a1	261	e.19.1.1 (A:4-264) Nickel-iron hydrogenase, small	3e-11
d1zema1	260	c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconoba	5e-11
d1cyda_	242	c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul	1e-10
d1spxa_	264	c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato	2e-10
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-10
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-10
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-05
d1hxha_	253	c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydroge	2e-10
d1frfs_	261	e.19.1.1 (S:) Nickel-iron hydrogenase, small subun	2e-10
d2gdza1	254	c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrog	2e-10
d2ag5a1	245	c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR fami	3e-10
d2o23a1	248	c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydr	7e-10
d2ew8a1	247	c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenas	8e-10
d1dhra_	236	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	1e-09
d1xkqa_	272	c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh	5e-09
d1wmaa1	275	c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydrox	5e-09
d1pr9a_	244	c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapie	6e-09
d1iy8a_	258	c.2.1.2 (A:) Levodione reductase {Corynebacterium	2e-08
d1ooea_	235	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	2e-08
d2ae2a_	259	c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu	5e-08
d1ulsa_	242	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	6e-08
d1ulua_	256	c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermoph	1e-07
d1xhla_	274	c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh	1e-07
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	1e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d2bgka1	268	c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de	4e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	8e-07
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d1ja9a_	259	c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reduc	9e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-04
d1ae1a_	258	c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu	1e-06
d1x1ta1	260	c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydroge	1e-06
d1w6ua_	294	c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondr	2e-06
d1uzma1	237	c.2.1.2 (A:9-245) beta-keto acyl carrier protein r	2e-06
d1h5qa_	260	c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Aga	2e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1xq1a_	259	c.2.1.2 (A:) Tropinone reductase {Thale cress (Ara	4e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-06
d1yo6a1	250	c.2.1.2 (A:1-250) Putative carbonyl reductase snif	7e-06
d2rhca1	257	c.2.1.2 (A:5-261) beta-keto acyl carrier protein r	1e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.004
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1yxma1	297	c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA re	8e-05
d1luaa1	191	c.2.1.7 (A:98-288) Methylene-tetrahydromethanopter	8e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	2e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.001
d1nffa_	244	c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycob	2e-04
d1o5ia_	234	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	3e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	3e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	3e-04
d1mxha_	266	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	4e-04
d1g0oa_	272	c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase	6e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.001
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.003
d2a4ka1	241	c.2.1.2 (A:2-242) beta-keto acyl carrier protein r	0.002
d1geea_	261	c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megat	0.003

>d2fug61 e.19.1.2 (6:15-175) NAD-quinone oxidoreductase chain 6, Nqo6 {Thermus thermophilus [TaxId: 274]} Length = 161

class: Multi-domain proteins (alpha and beta)
fold: HydA/Nqo6-like
superfamily: HydA/Nqo6-like
family: Nq06-like
domain: NAD-quinone oxidoreductase chain 6, Nqo6
species: Thermus thermophilus [TaxId: 274]

 Score =  104 bits (260), Expect = 1e-27
 Identities = 36/72 (50%), Positives = 54/72 (75%), Gaps = 1/72 (1%)

Query: 280 MLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKK 339
           M +P+WVISMG+CA+ GG ++ +Y++V+  D ++PVD+YVPGCPP  EAL+Y ++QLQKK
Sbjct: 85  MPDPKWVISMGACASSGGMFN-NYAIVQNVDSVVPVDVYVPGCPPRPEALIYAVMQLQKK 143

Query: 340 VKRMKILQSWYR 351
           V+     +   R
Sbjct: 144 VRGQAYNERGER 155

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.4 bits (224), Expect = 1e-21
 Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 1/94 (1%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           N+       + FLP M + N GHIV ++S AG V +P L+ YC+SKFA  G  + L +EL
Sbjct: 115 NVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDEL 174

Query: 177 REDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRL 210
               + + +K T + P  V+TG  KNP   +   
Sbjct: 175 AAL-QITGVKTTCLCPNFVNTGFIKNPSTSLGPT 207

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.2 bits (189), Expect = 9e-17
 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 4/86 (4%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           N+     +L+ FLPDM  +  G ++   S+ G++GLP    YCASKFA+ GL E+LA  L
Sbjct: 114 NVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLL 173

Query: 177 REDARNSKIKFTSIFPFMVDTGLCKN 202
                   +  + I    V T   + 
Sbjct: 174 LPF----GVHLSLIECGPVHTAFMEK 195

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 73.9 bits (181), Expect = 8e-16
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)

Query: 130 PDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTS 189
             M+    G I+ ISS+ G+ G      Y +SK  V G  ++LA+EL        I   +
Sbjct: 131 KRMINNRYGRIINISSIVGLTGNVGQANYSSSKAGVIGFTKSLAKELASR----NITVNA 186

Query: 190 IFPFMVDTGL--CKNPKIKMNRLSSLPRG 216
           I P  + + +    + +IK N +S++P G
Sbjct: 187 IAPGFISSDMTDKISEQIKKNIISNIPAG 215

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.4 bits (180), Expect = 1e-15
 Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 6/87 (6%)

Query: 117 NLKNLQIILETFLPDMMEKN--RGHIVGISSMAGIVGLPN--LVPYCASKFAVRGLMEAL 172
           N+  L I        M E+N   GHI+ I+SM+G   LP      Y A+K+AV  L E L
Sbjct: 120 NVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFYSATKYAVTALTEGL 179

Query: 173 AEELREDARNSKIKFTSIFPFMVDTGL 199
            +ELRE   +  I+ T I P +V+T  
Sbjct: 180 RQELREAQTH--IRATCISPGVVETQF 204

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.6 bits (180), Expect = 1e-15
 Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 3/88 (3%)

Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
            LP M++++ G IV +SS+AG V  P +  Y ASKFA+ G   ++ +E         +  
Sbjct: 134 ALP-MLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYS--VSRVNVSI 190

Query: 188 TSIFPFMVDTGLCKNPKIKMNRLSSLPR 215
           T     ++DT         +  + + P+
Sbjct: 191 TLCVLGLIDTETAMKAVSGIVHMQAAPK 218

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 302

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 72.3 bits (177), Expect = 5e-15
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 4/81 (4%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           +L+    +       M ++N G I+  +S +GI G      Y A+K  + GL   L  E 
Sbjct: 121 HLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNFGQANYSAAKLGLLGLANTLVIEG 180

Query: 177 REDARNSKIKFTSIFPFMVDT 197
           R++     I   +I P     
Sbjct: 181 RKN----NIHCNTIAPNAGSR 197

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

 Score = 70.9 bits (173), Expect = 9e-15
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 6/91 (6%)

Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
               MM+K +G I+ I+S+ G++G      Y A+K  V G  +  A E         I  
Sbjct: 121 ATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASR----NINV 176

Query: 188 TSIFPFMVDTGLCK--NPKIKMNRLSSLPRG 216
             + P  + + +       ++   L ++P G
Sbjct: 177 NVVCPGFIASDMTAKLGEDMEKKILGTIPLG 207

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} Length = 243

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

 Score = 69.8 bits (170), Expect = 2e-14
 Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 6/102 (5%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           NL ++  + +  +  MM+K  G I+ I S+ G +G      Y A+K  + G  ++LA E+
Sbjct: 109 NLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAAKAGLIGFSKSLAREV 168

Query: 177 REDARNSKIKFTSIFPFMVDTGLCK--NPKIKMNRLSSLPRG 216
                   I    + P  ++T + +  +   +   L+ +P G
Sbjct: 169 ASR----GITVNVVAPGFIETDMTRALSDDQRAGILAQVPAG 206

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} Length = 240

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

 Score = 67.5 bits (164), Expect = 1e-13
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 4/98 (4%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           NLK    + +     M  ++ GHI  I+S+A      +   YC SKF  RGL+E +    
Sbjct: 116 NLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFRHSSIYCMSKFGQRGLVETMRLYA 175

Query: 177 REDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLP 214
           R+      ++ T + P  V T +      +M  L  +P
Sbjct: 176 RKC----NVRITDVQPGAVYTPMWGKVDDEMQALMMMP 209

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} Length = 254

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

 Score = 67.0 bits (163), Expect = 2e-13
 Identities = 21/96 (21%), Positives = 32/96 (33%), Gaps = 7/96 (7%)

Query: 117 NLKNLQIILETFLPDMMEK---NRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALA 173
           N   L       L    ++     G I  I S+ G   +  +  Y ASK AV     +LA
Sbjct: 107 NFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSASKAAVVSFTNSLA 166

Query: 174 EELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNR 209
           +          +   SI P +  T L       ++ 
Sbjct: 167 KLAPIT----GVTAYSINPGITRTPLVHTFNSWLDV 198

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.6 bits (161), Expect = 4e-13
 Identities = 61/283 (21%), Positives = 101/283 (35%), Gaps = 37/283 (13%)

Query: 4   ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLS 61
              + L +NK+ EI  G   NL NL  L L NN+I  + P + + L KL  L L  N+L 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 62  SLPRG----------------------FGAFPVLEVLDLTYNNLNEQS-LPGNFFMLETL 98
            LP                        F     + V++L  N L       G F  ++ L
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152

Query: 99  RALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPY 158
             + + D +   +P   G   +L  +        ++ N+   V  +S+ G+  L  L   
Sbjct: 153 SYIRIADTNITTIPQ--GLPPSLTEL-------HLDGNKITKVDAASLKGLNNLAKLGLS 203

Query: 159 CASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG-F 217
             S  AV     A    LRE    +  K   +   + D    +   +  N +S++    F
Sbjct: 204 FNSISAVDNGSLANTPHLRE-LHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 262

Query: 218 GAFPVLEAFSFTTILDLTYNNLNEQSL-PGNFFMLETLRALYL 259
                    +  + + L  N +    + P  F  +    A+ L
Sbjct: 263 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.0 bits (123), Expect = 3e-08
 Identities = 43/253 (16%), Positives = 82/253 (32%), Gaps = 27/253 (10%)

Query: 34  NNQIETLPTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTYNNLNEQSLPGNF 92
           +  +E +P  L   P   +L+L  N+++ +  G F     L  L L  N ++ +  PG F
Sbjct: 19  DLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAF 75

Query: 93  FMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSM------ 146
             L  L  LYL  N  + LP ++        + E  +  + +     +  +  +      
Sbjct: 76  APLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 135

Query: 147 --------AGIVGLPNLVPYCASKFAVRGLMEALAEELRE-DARNSKIKFTSIFPFMVDT 197
                       G+  L     +   +  + + L   L E     +KI            
Sbjct: 136 LKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLN 195

Query: 198 GLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRAL 257
            L K      +  +         P L             NN     +PG     + ++ +
Sbjct: 196 NLAKLGLSFNSISAVDNGSLANTPHLREL--------HLNNNKLVKVPGGLADHKYIQVV 247

Query: 258 YLGDNDFEVLPAE 270
           YL +N+   + + 
Sbjct: 248 YLHNNNISAIGSN 260

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 22/154 (14%), Positives = 44/154 (28%), Gaps = 32/154 (20%)

Query: 1   MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRL 60
           M+ +   T               +  L  + + +  I T+P  L   P L  L+L  N++
Sbjct: 126 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKI 183

Query: 61  SS-LPRGFGAFPVLEVLD----------------------LTYNNLNEQSLPGNFFMLET 97
           +            L  L                       L  NN     +PG     + 
Sbjct: 184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY 243

Query: 98  LRALYLGDNDFEVLPAE-------IGNLKNLQII 124
           ++ +YL +N+   + +             +   +
Sbjct: 244 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV 277

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

 Score = 64.6 bits (157), Expect = 1e-12
 Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 6/104 (5%)

Query: 117 NLKNLQIILETFLPDMMEKNRG-HIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEE 175
           NL  +       +  M  K  G  I+ +SS+ G VG P+L  Y ASK AVR + ++ A +
Sbjct: 113 NLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALD 172

Query: 176 LREDARNSKIKFTSIFPFMVDTGLCKN---PKIKMNRLSSLPRG 216
                 +  ++  ++ P  + T L  +    +  M++ +  P G
Sbjct: 173 CALKDYD--VRVNTVHPGYIKTPLVDDLPGAEEAMSQRTKTPMG 214

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} Length = 254

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

 Score = 64.2 bits (156), Expect = 2e-12
 Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 17/127 (13%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           NL  + I ++T +P M +   G IV ISS AG++GL     Y ASK+ VRGL +  A EL
Sbjct: 110 NLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVEL 169

Query: 177 REDARNSKIKFTSIFPFMVDTGLCKN----------PKIKMNRLSSLPR---GFGAFPVL 223
             D    +I+  S+ P M  T +             P   M R+ + P    G     + 
Sbjct: 170 GTD----RIRVNSVHPGMTYTPMTAETGIRQGEGNYPNTPMGRVGNEPGEIAGAVVKLLS 225

Query: 224 EAFSFTT 230
           +  S+ T
Sbjct: 226 DTSSYVT 232

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.5 bits (146), Expect = 4e-12
 Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 2/113 (1%)

Query: 9   LSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFG 68
           L+H  L  +   L  L+ +  L L +N++  LP +L++L  L +L    N L ++  G  
Sbjct: 5   LAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVA 62

Query: 69  AFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL 121
             P L+ L L  N L + +          L  L L  N           L  +
Sbjct: 63  NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (103), Expect = 2e-06
 Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 3/86 (3%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
           +T + LSHN+L+ +PP LA L  LE+L   +N +E +   +++LP+L+ L L  NRL   
Sbjct: 22  VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQS 80

Query: 64  P--RGFGAFPVLEVLDLTYNNLNEQS 87
              +   + P L +L+L  N+L ++ 
Sbjct: 81  AAIQPLVSCPRLVLLNLQGNSLCQEE 106

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 63.9 bits (154), Expect = 6e-12
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 1   MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRL 60
           +  +T +TL  N + +I P +++L  L+ L   NN++  +  SL++L  +  L+ G N++
Sbjct: 306 LKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQI 363

Query: 61  SSLPRGFGAFPVLEVLDLTYN 81
           S L         +  L L   
Sbjct: 364 SDLT-PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.8 bits (133), Expect = 2e-09
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 23  NLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNN 82
           NL NL  LTL+ N I  +   +SSL KL+ L    N++S +         +  L   +N 
Sbjct: 305 NLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQ 362

Query: 83  LNEQSLPGNFFMLETLRALYLGDN 106
           +++ +   N   L  +  L L D 
Sbjct: 363 ISDLTPLAN---LTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.7 bits (112), Expect = 9e-07
 Identities = 34/259 (13%), Positives = 69/259 (26%), Gaps = 9/259 (3%)

Query: 22  ANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYN 81
             L       L    + T   S + L ++  L      + S+  G      L  ++ + N
Sbjct: 19  TALAEKMKTVLGKTNV-TDTVSQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNN 76

Query: 82  NLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIV 141
            L + +       L  L  + + +N    +           + L       ++  +    
Sbjct: 77  QLTDIT---PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 142 GISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCK 201
                     + ++          +        +L+  A  + ++   I    V      
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 202 NPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGD 261
                +  L +          L   +    L L  N L +    G    L  L  L L +
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLAN 250

Query: 262 NDFEVLPAEIGNLKNLQIM 280
           N    L   +  L  L  +
Sbjct: 251 NQISNLA-PLSGLTKLTEL 268

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.2 bits (103), Expect = 1e-05
 Identities = 41/272 (15%), Positives = 80/272 (29%), Gaps = 19/272 (6%)

Query: 6   RITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPR 65
           +  L    + +      +L  +  L      I+++   +  L  L  +N   N+L+ +  
Sbjct: 26  KTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDIT- 82

Query: 66  GFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLK-----N 120
                  L  + +  N + + +   N   L  L        D + L       +     N
Sbjct: 83  PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 142

Query: 121 LQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDA 180
               +         +       ++ +  +  L  L     S   V  +         E  
Sbjct: 143 TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 202

Query: 181 RNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLN 240
             +  + + I P  + T L     +  N+L  +         L + +  T LDL  N ++
Sbjct: 203 IATNNQISDITPLGILTNL-DELSLNGNQLKDI-------GTLASLTNLTDLDLANNQIS 254

Query: 241 EQSLPGNFFMLETLRALYLGDNDFEVLPAEIG 272
                     L  L  L LG N    +    G
Sbjct: 255 N---LAPLSGLTKLTELKLGANQISNISPLAG 283

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 4  ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMN 58
          +T +      +K I  G+  L NL  +   NNQ+  +   L +L KL  + +  N
Sbjct: 46 VTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNN 98

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 38/218 (17%), Positives = 69/218 (31%), Gaps = 28/218 (12%)

Query: 45  SSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLG 104
           + L  L  L    N++S +    G    L+ L L  N L +    G    L  L  L L 
Sbjct: 194 AKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLA 249

Query: 105 DNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFA 164
           +N    L   +  L  L  +    L      N   + G++++  +    N +   +    
Sbjct: 250 NNQISNLA-PLSGLTKLTEL---KLGANQISNISPLAGLTALTNLELNENQLEDISPISN 305

Query: 165 VRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLE 224
           ++ L                   + I P    T L +      N++S +         + 
Sbjct: 306 LKNLTYL---------TLYFNNISDISPVSSLTKL-QRLFFANNKVSDVS-SLANLTNIN 354

Query: 225 AFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDN 262
                  L   +N +++ +   N   L  +  L L D 
Sbjct: 355 ------WLSAGHNQISDLTPLAN---LTRITQLGLNDQ 383

>d1wuis1 e.19.1.1 (S:1-267) Nickel-iron hydrogenase, small subunit {Desulfovibrio vulgaris [TaxId: 881]} Length = 267

class: Multi-domain proteins (alpha and beta)
fold: HydA/Nqo6-like
superfamily: HydA/Nqo6-like
family: Nickel-iron hydrogenase, small subunit
domain: Nickel-iron hydrogenase, small subunit
species: Desulfovibrio vulgaris [TaxId: 881]

 Score = 62.7 bits (152), Expect = 7e-12
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 278 QIMLEPRWVISMGSCANGGGYYH--YSYSVVRGCDRIIP----VDIYVPGCPPTAEALMY 331
           +I+ + + VI+ G+CA  GG      + +  +G +  +       I + GCPP    L+ 
Sbjct: 100 RILPKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGVKAINIAGCPPNPYNLVG 159

Query: 332 GILQLQKKVK 341
            I+   K   
Sbjct: 160 TIVYYLKNKA 169

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 250

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (151), Expect = 8e-12
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 5/83 (6%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           NL     + +  LP  + K++G+++ ISS+ G +G    VPY A+K AV  + +ALA + 
Sbjct: 111 NLLGTYTLTKLALP-YLRKSQGNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALALDE 169

Query: 177 REDARNSKIKFTSIFPFMVDTGL 199
                   ++   I P  + T L
Sbjct: 170 SPY----GVRVNCISPGNIWTPL 188

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} Length = 248

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

 Score = 61.4 bits (149), Expect = 2e-11
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 4/83 (4%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           NL     +      +M +   G IV ++S+ G+        Y ASK  +  L  +LA +L
Sbjct: 107 NLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSLALDL 166

Query: 177 REDARNSKIKFTSIFPFMVDTGL 199
                  +I+  ++ P  + T  
Sbjct: 167 APL----RIRVNAVAPGAIATEA 185

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} Length = 276

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

 Score = 61.6 bits (149), Expect = 2e-11
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 6/93 (6%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           N+K     ++  LP  +  +RG+++   S AG         Y A+K A+ GL+  LA EL
Sbjct: 115 NVKGYIHAVKACLP-ALVASRGNVIFTISNAGFYPNGGGPLYTAAKHAIVGLVRELAFEL 173

Query: 177 REDARNSKIKFTSIFPFMVDTGLCKNPKIKMNR 209
                   ++   +    +++ L     + M  
Sbjct: 174 AP-----YVRVNGVGSGGINSDLRGPSSLGMGS 201

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 241

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 61.0 bits (147), Expect = 2e-11
 Identities = 34/143 (23%), Positives = 44/143 (30%), Gaps = 8/143 (5%)

Query: 80  YNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGH 139
             +     L       E    L       EV      N+  L        P   E  RG 
Sbjct: 69  VVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGV 128

Query: 140 IVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT-- 197
           IV  +S+A   G      Y ASK  V  L    A EL        I+  ++ P + DT  
Sbjct: 129 IVNTASVAAFEGQIGQAAYAASKGGVVALTLPAARELAGW----GIRVVTVAPGLFDTPL 184

Query: 198 --GLCKNPKIKMNRLSSLPRGFG 218
             GL +  K  +      P   G
Sbjct: 185 LQGLPEKAKASLAAQVPFPPRLG 207

>d1cc1s_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit {Desulfomicrobium baculatum [TaxId: 899]} Length = 278

class: Multi-domain proteins (alpha and beta)
fold: HydA/Nqo6-like
superfamily: HydA/Nqo6-like
family: Nickel-iron hydrogenase, small subunit
domain: Nickel-iron hydrogenase, small subunit
species: Desulfomicrobium baculatum [TaxId: 899]

 Score = 60.8 bits (147), Expect = 3e-11
 Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 8/73 (10%)

Query: 278 QIMLEPRWVISMGSCANGGGYYHYSYSV--------VRGCDRIIPVDIYVPGCPPTAEAL 329
            +  +    +++G+C+  GG      +V            ++I  + + VPGCPP  + +
Sbjct: 107 DLAPKSLATVAVGTCSAYGGIPAAEGNVTGSKSVRDFFADEKIEKLLVNVPGCPPHPDWM 166

Query: 330 MYGILQLQKKVKR 342
           +  ++     V  
Sbjct: 167 VGTLVAAWSHVLN 179

>d1yq9a1 e.19.1.1 (A:4-264) Nickel-iron hydrogenase, small subunit {Desulfovibrio gigas [TaxId: 879]} Length = 261

class: Multi-domain proteins (alpha and beta)
fold: HydA/Nqo6-like
superfamily: HydA/Nqo6-like
family: Nickel-iron hydrogenase, small subunit
domain: Nickel-iron hydrogenase, small subunit
species: Desulfovibrio gigas [TaxId: 879]

 Score = 60.7 bits (147), Expect = 3e-11
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 8/81 (9%)

Query: 278 QIMLEPRWVISMGSCANGGGYY--HYSYSVVRGCDRIIP----VDIYVPGCPPTAEALMY 331
           ++  + + VI++G+CA  GG      + +   G +  +       I + GCPP     + 
Sbjct: 95  EVAPKAKAVIAIGTCATYGGVQAAKPNPTGTVGVNEALGKLGVKAINIAGCPPNPMNFVG 154

Query: 332 GILQLQKKVKRMKILQSWYRR 352
            ++ L    K M  L    R 
Sbjct: 155 TVVHLLT--KGMPELDKQGRP 173

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} Length = 260

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

 Score = 60.2 bits (145), Expect = 5e-11
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 4/80 (5%)

Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
               M+ +N G IV  +SMAG+ G PN+  Y  SK A+  L E  A +L        I+ 
Sbjct: 125 VSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLAPY----NIRV 180

Query: 188 TSIFPFMVDTGLCKNPKIKM 207
            +I P  +  G     ++++
Sbjct: 181 NAISPGYMGPGFMWERQVEL 200

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.8 bits (142), Expect = 1e-10
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 9/105 (8%)

Query: 117 NLKNLQIILETFLPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEE 175
           NL+++  + +    DM+ +   G IV +SSM   V  PNL+ Y ++K A+  L +A+A E
Sbjct: 105 NLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAME 164

Query: 176 LREDARNSKIKFTSIFPFMVDTGLCK----NPKIKMNRLSSLPRG 216
           L       KI+  S+ P +V T + K    +P+         P  
Sbjct: 165 LGPH----KIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPLR 205

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 58.4 bits (141), Expect = 2e-10
 Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 4/83 (4%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           NL+++  + +  +P +       +   S  +G+   P+   Y  +K A+       A +L
Sbjct: 120 NLRSVIALTKKAVPHLSSTKGEIVNISSIASGLHATPDFPYYSIAKAAIDQYTRNTAIDL 179

Query: 177 REDARNSKIKFTSIFPFMVDTGL 199
            +      I+  SI P +V TG 
Sbjct: 180 IQH----GIRVNSISPGLVATGF 198

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 59.1 bits (141), Expect = 2e-10
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 8/77 (10%)

Query: 47  LPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDN 106
            P L  LN+  N+L  LP      P LE L  ++N+L    +P    + + L+ L++  N
Sbjct: 283 PPSLEELNVSNNKLIELP---ALPPRLERLIASFNHL--AEVPE---LPQNLKQLHVEYN 334

Query: 107 DFEVLPAEIGNLKNLQI 123
                P    ++++L++
Sbjct: 335 PLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 57.5 bits (137), Expect = 7e-10
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 8/77 (10%)

Query: 23  NLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNN 82
              +LE L + NN++  LP   +  P+L  L    N L+ +P        L+ L + YN 
Sbjct: 282 LPPSLEELNVSNNKLIELP---ALPPRLERLIASFNHLAEVPELPQN---LKQLHVEYNP 335

Query: 83  LNEQSLPGNFFMLETLR 99
           L  +  P     +E LR
Sbjct: 336 L--REFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 55.6 bits (132), Expect = 2e-09
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
           +  + +S+NKL E+P     L   E L    N +  +P        L+ L++  N L   
Sbjct: 286 LEELNVSNNKLIELPALPPRL---ERLIASFNHLAEVP---ELPQNLKQLHVEYNPLREF 339

Query: 64  PRGFGAFPVLEV 75
           P    +   L +
Sbjct: 340 PDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.6 bits (119), Expect = 1e-07
 Identities = 39/278 (14%), Positives = 70/278 (25%), Gaps = 8/278 (2%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSL 63
              + L++  L  +P       +LE L    N +  LP    S   L+ L +  N L +L
Sbjct: 40  AHELELNNLGLSSLPE---LPPHLESLVASCNSLTELPELPQS---LKSLLVDNNNLKAL 93

Query: 64  PRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 123
                    L V +     L E        +++          D       I    N   
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153

Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNS 183
            L                        + L        +              L     ++
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213

Query: 184 KIKFTSIFPF--MVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNE 241
            +  T       +    +  N    +  L            + +       +L Y N + 
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273

Query: 242 QSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI 279
             +     +  +L  L + +N    LPA    L+ L  
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIA 311

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.1 bits (115), Expect = 4e-07
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILN 54
           + R+  S N L E+P    NL   + L +  N +   P    S+  LR+ +
Sbjct: 306 LERLIASFNHLAEVPELPQNL---KQLHVEYNPLREFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.9 bits (99), Expect = 4e-05
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 26 NLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNE 85
              L L N  + +LP      P L  L    N L+ LP    +   L+ L +  NNL  
Sbjct: 39 QAHELELNNLGLSSLP---ELPPHLESLVASCNSLTELPELPQS---LKSLLVDNNNLKA 92

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 14/72 (19%)

Query: 208 NRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVL 267
           N+L  LP                 L  ++N+L    +P    + + L+ L++  N     
Sbjct: 294 NKLIELPALPPRL---------ERLIASFNHL--AEVPE---LPQNLKQLHVEYNPLREF 339

Query: 268 PAEIGNLKNLQI 279
           P    ++++L++
Sbjct: 340 PDIPESVEDLRM 351

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 253

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

 Score = 58.1 bits (140), Expect = 2e-10
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIF 191
            M++  G I+ ++S++  + +     Y ASK AV  L  A A   R+      I+  SI 
Sbjct: 125 AMKETGGSIINMASVSSWLPIEQYAGYSASKAAVSALTRAAALSCRKQGYA--IRVNSIH 182

Query: 192 PFMVDTGL 199
           P  + T +
Sbjct: 183 PDGIYTPM 190

>d1frfs_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit {Desulfovibrio fructosovorans [TaxId: 878]} Length = 261

class: Multi-domain proteins (alpha and beta)
fold: HydA/Nqo6-like
superfamily: HydA/Nqo6-like
family: Nickel-iron hydrogenase, small subunit
domain: Nickel-iron hydrogenase, small subunit
species: Desulfovibrio fructosovorans [TaxId: 878]

 Score = 58.0 bits (140), Expect = 2e-10
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 282 EPRWVISMGSCANGGGYYH--YSYSVVRGCDRIIPVD-IYVPGCPPTAEALMYGILQLQK 338
           + + +I +G+C+  GG      + S  +G    + V  I +PGCPP     +  ++ +  
Sbjct: 101 KAKGIICIGTCSPYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVVHV-- 158

Query: 339 KVKRMKILQSWYR 351
             K +  L    R
Sbjct: 159 LTKGIPDLDENGR 171

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (140), Expect = 2e-10
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 5/86 (5%)

Query: 117 NLKNLQIILETFLPDMMEKNRGH---IVGISSMAGIVGLPNLVPYCASKFAVRGLMEALA 173
           NL ++       L  M ++N G    I+ +SS+AG++ +     YCASK  + G   + A
Sbjct: 105 NLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAA 164

Query: 174 EELREDARNSKIKFTSIFPFMVDTGL 199
             L  +  NS ++  +I P  V+T +
Sbjct: 165 --LAANLMNSGVRLNAICPGFVNTAI 188

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} Length = 245

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (138), Expect = 3e-10
 Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 5/84 (5%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAG-IVGLPNLVPYCASKFAVRGLMEALAEE 175
           N++++ ++++ FLP M+ +  G+I+ +SS+A  + G+ N   Y  +K AV GL +++A +
Sbjct: 105 NVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGVVNRCVYSTTKAAVIGLTKSVAAD 164

Query: 176 LREDARNSKIKFTSIFPFMVDTGL 199
             +      I+   + P  VDT  
Sbjct: 165 FIQQ----GIRCNCVCPGTVDTPS 184

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 248

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (135), Expect = 7e-10
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIF 191
                RG I+  +S+A   G      Y ASK  + G+   +A +L        I+  +I 
Sbjct: 137 DQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIARDLAPI----GIRVMTIA 192

Query: 192 PFMVDT 197
           P +  T
Sbjct: 193 PGLFGT 198

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} Length = 247

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

 Score = 56.4 bits (136), Expect = 8e-10
 Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 10/105 (9%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           N+ +  ++ + F+P M     G I+ ++S    + +     Y ++K A  G   ALA +L
Sbjct: 111 NVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKIEAYTHYISTKAANIGFTRALASDL 170

Query: 177 REDARNSKIKFTSIFPFMVDTGLCKN------PKIKMNRLSSLPR 215
            +D     I   +I P +V T   +         +  N L ++PR
Sbjct: 171 GKD----GITVNAIAPSLVRTATTEASALSAMFDVLPNMLQAIPR 211

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 236

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.6 bits (133), Expect = 1e-09
 Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 4/92 (4%)

Query: 124 ILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNS 183
            + + L     K  G +    + A + G P ++ Y  +K AV  L ++LA +       S
Sbjct: 108 TISSHLATKHLKEGGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKNS--GMPS 165

Query: 184 KIKFTSIFPFMVDTGLCKN--PKIKMNRLSSL 213
                ++ P  +DT + +   P+   +  + L
Sbjct: 166 GAAAIAVLPVTLDTPMNRKSMPEADFSSWTPL 197

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 54.2 bits (130), Expect = 5e-09
 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           NL+ +  + +   P ++      +   S +AG    P+ + Y  +K A+     + A +L
Sbjct: 120 NLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQAQPDFLYYAIAKAALDQYTRSTAIDL 179

Query: 177 REDARNSKIKFTSIFPFMVDTGL 199
            +      I+  S+ P MV+TG 
Sbjct: 180 AKF----GIRVNSVSPGMVETGF 198

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 275

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (129), Expect = 5e-09
 Identities = 22/124 (17%), Positives = 36/124 (29%), Gaps = 43/124 (34%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVP------------------- 157
           N    + +    LP +  K +G +V +SS+  +  L +  P                   
Sbjct: 112 NFFGTRDVCTELLPLI--KPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGL 169

Query: 158 ----------------------YCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV 195
                                 Y  +K  V  L    A +L E  +  KI   +  P  V
Sbjct: 170 MNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWV 229

Query: 196 DTGL 199
            T +
Sbjct: 230 RTDM 233

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (129), Expect = 6e-09
 Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 9/105 (8%)

Query: 117 NLKNLQIILETFLPDMMEKNRGH-IVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEE 175
           NL+ +  + +     ++ +     IV +SS      + N   YC++K A+  L + +A E
Sbjct: 107 NLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALE 166

Query: 176 LREDARNSKIKFTSIFPFMVDTGLCK----NPKIKMNRLSSLPRG 216
           L       KI+  ++ P +V T + +    +P      L+ +P G
Sbjct: 167 LGPH----KIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIPLG 207

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} Length = 258

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

 Score = 52.4 bits (125), Expect = 2e-08
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
            L  M E+  G +V  +S+ GI G+ N   Y A+K  V GL    A E         I+ 
Sbjct: 126 VLKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAKHGVVGLTRNSAVEYGRY----GIRI 181

Query: 188 TSIFPFMVDTGLCKN 202
            +I P  + T + +N
Sbjct: 182 NAIAPGAIWTPMVEN 196

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 235

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 52.2 bits (124), Expect = 2e-08
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 127 TFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIK 186
             L     K  G +    + A +   P+++ Y  +K AV  L  +LA +      NS + 
Sbjct: 111 AKLATTHLKPGGLLQLTGAAAAMGPTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAV- 169

Query: 187 FTSIFPFMVDTGLCKN--PKIKMNRLSSL 213
             +I P  +DT + +   P    +  + L
Sbjct: 170 -LTIMPVTLDTPMNRKWMPNADHSSWTPL 197

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

 Score = 50.8 bits (121), Expect = 5e-08
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           N +    +     P +    RG++V ISS++G + +P    Y A+K A+  L   LA E 
Sbjct: 117 NFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGATKGAMDQLTRCLAFEW 176

Query: 177 REDARNSKIKFTSIFPFMVDTGL 199
            +D     I+   + P ++ T L
Sbjct: 177 AKD----NIRVNGVGPGVIATSL 195

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

 Score = 50.8 bits (121), Expect = 6e-08
 Identities = 19/116 (16%), Positives = 40/116 (34%), Gaps = 6/116 (5%)

Query: 103 LGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASK 162
                 E     +        ++     + M +     + +++    +G      Y AS 
Sbjct: 93  HWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLGNLGQANYAASM 152

Query: 163 FAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKN--PKIKMNRLSSLPRG 216
             V GL   LA EL        I+  ++ P  ++T +      K++   +++ P G
Sbjct: 153 AGVVGLTRTLALELGRW----GIRVNTLAPGFIETRMTAKVPEKVREKAIAATPLG 204

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} Length = 256

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

 Score = 50.2 bits (119), Expect = 1e-07
 Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 2/100 (2%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           +  +L  +     P + E   G IV ++  A    +P       +K A+   +  LA EL
Sbjct: 121 SAYSLVAVARRAEPLLRE--GGGIVTLTYYASEKVVPKYNVMAIAKAALEASVRYLAYEL 178

Query: 177 REDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRG 216
                            +    +    K+      + P  
Sbjct: 179 GPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLR 218

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 50.0 bits (119), Expect = 1e-07
 Identities = 19/124 (15%), Positives = 41/124 (33%), Gaps = 13/124 (10%)

Query: 76  LDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEK 135
           +D+  NN       G     + +         F++      N + +  + +     +++ 
Sbjct: 85  IDILVNNAGANLADGTANTDQPVELY---QKTFKL------NFQAVIEMTQKTKEHLIKT 135

Query: 136 NRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV 195
               +   S +AG         Y  +K A+       A +L +      ++  S+ P  V
Sbjct: 136 KGEIVNVSSIVAGPQAHSGYPYYACAKAALDQYTRCTAIDLIQH----GVRVNSVSPGAV 191

Query: 196 DTGL 199
            TG 
Sbjct: 192 ATGF 195

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 1e-07
 Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 5/104 (4%)

Query: 8   TLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSS---LP 64
            L    L+  P  L       +L   ++   TL     ++P+L  LNL  NRL     + 
Sbjct: 26  ALDLKGLRSDP-DLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMS 84

Query: 65  RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF 108
                 P L++L+L+ N L  +    +      L  L+L  N  
Sbjct: 85  SIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSL 127

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 2e-07
 Identities = 37/222 (16%), Positives = 64/222 (28%), Gaps = 19/222 (8%)

Query: 43  SLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALY 102
            +S +     +N     L++LP          +L L+ N L   S          L  L 
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFS-LATLMPYTRLTQLN 61

Query: 103 LGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASK 162
           L D          G L  L  +  +          G  +   ++       ++     + 
Sbjct: 62  L-DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV------LDVSFNRLTS 114

Query: 163 FAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPV 222
             +  L      +      N           +  T   +   +  N L+ LP G     +
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPP--GLLTPTPKLEKLSLANNNLTELPAG-----L 167

Query: 223 LEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF 264
           L        L L  N+L   ++P  FF    L   +L  N +
Sbjct: 168 LNGLENLDTLLLQENSL--YTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 8e-06
 Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 3/56 (5%)

Query: 5  TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNR 59
            +      L  +PP L    +  IL L  N + T    +L    +L  LNL    
Sbjct: 13 LEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 1e-05
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 10  SHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRL 60
           ++N L E+P G L  L NL+ L L  N + T+P        L    L  N  
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 2/76 (2%)

Query: 11  HNKLKEIPPGLANLVNLEILTLF--NNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFG 68
            N+LK +PPGL              NN  E     L+ L  L  L L  N L ++P+GF 
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192

Query: 69  AFPVLEVLDLTYNNLN 84
              +L    L  N   
Sbjct: 193 GSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 1e-04
 Identities = 31/169 (18%), Positives = 40/169 (23%), Gaps = 49/169 (28%)

Query: 4   ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGM----- 57
            T + LS N L       L     L  L L   ++  L     +LP L  L+L       
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQS 91

Query: 58  ------------------------------------------NRLSSLPRGFGAFPVLEV 75
                                                     N L +LP G         
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151

Query: 76  LDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQII 124
                NN   +   G    LE L  L L +N    +P        L   
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFA 200

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

 Score = 48.5 bits (115), Expect = 4e-07
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAG-IVGLPNLVPYCASKFAVRGLMEALAEE 175
           N+    ++ +     M+   +G IV  +S++    G      Y A+K AV GL  +L  E
Sbjct: 115 NVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGEGVSHVYTATKHAVLGLTTSLCTE 174

Query: 176 LREDARNSKIKFTSIFPFMVDTGL 199
           L E      I+   + P++V + L
Sbjct: 175 LGEY----GIRVNCVSPYIVASPL 194

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 47.8 bits (112), Expect = 7e-07
 Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 32  LFNNQIE-TLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNL 83
           L NN+I  TLP  L+ L  L  LN+  N L       G     +V     N  
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 47.8 bits (112), Expect = 8e-07
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 1   MLYITRITLSHNKLK-EIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNR 59
              +  + L +N++   +P GL  L  L  L +  N +        +L +  +     N+
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302

Query: 60  -LSSLP 64
            L   P
Sbjct: 303 CLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 44/267 (16%), Positives = 84/267 (31%), Gaps = 21/267 (7%)

Query: 4   ITRITLSHNKLK---EIPPGLANLVNLEILTLFN--NQIETLPTSLSSLPKLRILNLGMN 58
           +  + LS   L     IP  LANL  L  L +    N +  +P +++ L +L  L +   
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 59  RLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNL 118
            +S     F +     V      N    +LP +   L  L  +    N       +    
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD---- 167

Query: 119 KNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELRE 178
                   + L   M  +R  + G             V    +       +   +++  +
Sbjct: 168 ---SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224

Query: 179 DARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLS-SLPRGFGAFPVLEAFSFTTILDLTYN 237
               +K         +  +       ++ NR+  +LP+G      L        L++++N
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH------SLNVSFN 278

Query: 238 NLNEQSLPGNFFMLETLRALYLGDNDF 264
           NL    +P     L+        +N  
Sbjct: 279 NL-CGEIP-QGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 41/262 (15%), Positives = 81/262 (30%), Gaps = 19/262 (7%)

Query: 23  NLVNLEILTLFNNQIE---TLPTSLSSLPKLRILNLG--MNRLSSLPRGFGAFPVLEVLD 77
               +  L L    +     +P+SL++LP L  L +G   N +  +P        L  L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 78  LTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNR 137
           +T+ N++         +   +   +  +     LP  I +L NL            + NR
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG-------ITFDGNR 160

Query: 138 GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT 197
                  S      L   +    ++   +            +   + +  +        +
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT------FANLNLAFVDLSRNMLEGDAS 214

Query: 198 GLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRAL 257
            L  + K       +          +        LDL  N +   +LP     L+ L +L
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG-TLPQGLTQLKFLHSL 273

Query: 258 YLGDNDFEVLPAEIGNLKNLQI 279
            +  N+      + GNL+   +
Sbjct: 274 NVSFNNLCGEIPQGGNLQRFDV 295

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 7e-07
 Identities = 14/95 (14%), Positives = 34/95 (35%), Gaps = 11/95 (11%)

Query: 25  VNLEILTLFNNQI--ETLPTSLSSLPKLRILNLGMNRLS-----SLPRGFGAFPVLEVLD 77
           ++++ L +   ++        L  L + +++ L    L+      +       P L  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 78  LTYNNLNEQSLPGNFFMLE----TLRALYLGDNDF 108
           L  N L +  +      L+     ++ L L +   
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 3e-06
 Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 11/98 (11%)

Query: 4  ITRITLSHNKL--KEIPPGLANLVNLEILTLFNNQI-----ETLPTSLSSLPKLRILNLG 56
          I  + +   +L        L  L   +++ L +  +     + + ++L   P L  LNL 
Sbjct: 4  IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 57 MNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFM 94
           N L       G   VL+ L      + + SL      
Sbjct: 64 SNELG----DVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 6e-05
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 15/75 (20%)

Query: 26  NLEILTLFNNQI-----ETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAF--------PV 72
            L +L L +  +      +L  +L +   LR L+L  N L     G             +
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG--DAGILQLVESVRQPGCL 427

Query: 73  LEVLDLTYNNLNEQS 87
           LE L L     +E+ 
Sbjct: 428 LEQLVLYDIYWSEEM 442

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 8e-05
 Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 20/98 (20%)

Query: 44  LSSLPKLRILNLGMNRLS-----SLPRGFGAFPVLEVLDLTYNNLNE-------QSLPGN 91
                 LR+L L    +S     SL     A   L  LDL+ N L +       +S+   
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 92  FFMLETLRALYLGDNDF-----EVLPAEIGNLKNLQII 124
             +LE L    L D  +     + L A   +  +L++I
Sbjct: 425 GCLLEQLV---LYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 7/57 (12%), Positives = 21/57 (36%), Gaps = 5/57 (8%)

Query: 73  LEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDN-----DFEVLPAEIGNLKNLQII 124
           ++ LD+    L++        +L+  + + L D        + + + +     L  +
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 8e-07
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 6/123 (4%)

Query: 7   ITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNL-GMNRLSSLPR 65
           + L   K+  I    A L   + +   +N+I  L      L +L+ L +           
Sbjct: 23  LDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEG 81

Query: 66  GFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE----IGNLKNL 121
              A P L  L LT N+L E         L++L  L +  N            I  +  +
Sbjct: 82  LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQV 141

Query: 122 QII 124
           +++
Sbjct: 142 RVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 3e-06
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 2/74 (2%)

Query: 9  LSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFG 68
          L+   +++      N V    L L   +I  +    ++L +   ++   N +  L  GF 
Sbjct: 3  LTAELIEQAA-QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFP 60

Query: 69 AFPVLEVLDLTYNN 82
              L+ L +  N 
Sbjct: 61 LLRRLKTLLVNNNR 74

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 4e-05
 Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 1/66 (1%)

Query: 32 LFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGN 91
          L    IE      ++  + R L+L   ++  +          + +D + N + +      
Sbjct: 3  LTAELIEQAA-QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPL 61

Query: 92 FFMLET 97
             L+T
Sbjct: 62 LRRLKT 67

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 14/118 (11%), Positives = 33/118 (27%), Gaps = 4/118 (3%)

Query: 232 LDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIM-LEPRWVISMG 290
           LDL    +    +      L+   A+   DN+   L      L+ L+ + +    +  +G
Sbjct: 23  LDLRGYKI--PVIENLGATLDQFDAIDFSDNEIRKLDG-FPLLRRLKTLLVNNNRICRIG 79

Query: 291 SCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQS 348
              +          +       +     +          +       KK  R+ ++  
Sbjct: 80  EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYK 137

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

 Score = 47.4 bits (112), Expect = 9e-07
 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 4/68 (5%)

Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIF 191
              +    I+  S  A + G+PN   Y  SK AV G   A A +         +    I 
Sbjct: 129 HCRRGGRIILTSSIAAVMTGIPNHALYAGSKAAVEGFCRAFAVDCGAK----GVTVNCIA 184

Query: 192 PFMVDTGL 199
           P  V T +
Sbjct: 185 PGGVKTDM 192

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 1e-06
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 4   ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNL 55
           +T +    NK+ +I P LA+L NL  + L NNQI  +   L++   L I+ L
Sbjct: 175 LTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 2e-06
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 18  PPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLD 77
              LANL  L  L   +N+I  +   L+SLP L  ++L  N++S +         L ++ 
Sbjct: 166 LTPLANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVT 223

Query: 78  LT 79
           LT
Sbjct: 224 LT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 9e-04
 Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5  TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRL 60
           +I    + + +     A+L  +  L+ F   + T+   +  L  L  L L  N++
Sbjct: 22 IKIAAGKSNVTDTVT-QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQI 75

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} Length = 258

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

 Score = 47.0 bits (111), Expect = 1e-06
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 4/91 (4%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           N +    + +   P +     G+++ +SS+AG   LP++  Y ASK A+  + ++LA E 
Sbjct: 115 NFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLACEW 174

Query: 177 REDARNSKIKFTSIFPFMVDTGLCKNPKIKM 207
            +D     I+  S+ P ++ T L +    K 
Sbjct: 175 AKD----NIRVNSVAPGVILTPLVETAIKKN 201

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} Length = 260

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

 Score = 46.7 bits (110), Expect = 1e-06
 Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 4/86 (4%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           NL  +       LP M ++  G I+ I+S  G+V   N   Y A+K  V G  +  A E 
Sbjct: 114 NLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHGVVGFTKVTALET 173

Query: 177 REDARNSKIKFTSIFPFMVDTGLCKN 202
                   I   +I P  V T L + 
Sbjct: 174 AGQ----GITANAICPGWVRTPLVEK 195

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} Length = 294

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

 Score = 46.7 bits (110), Expect = 2e-06
 Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 9/90 (10%)

Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIF 191
           +  +     + I+++    G   +VP  ++K  V  + ++LA E  +      ++F  I 
Sbjct: 150 IKAQKGAAFLSITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWGKY----GMRFNVIQ 205

Query: 192 PFMVDTGLC-----KNPKIKMNRLSSLPRG 216
           P  + T             +   +  +P G
Sbjct: 206 PGPIKTKGAFSRLDPTGTFEKEMIGRIPCG 235

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 237

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 46.3 bits (109), Expect = 2e-06
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIF 191
           M     G ++ I S++G+ G+ N   Y ASK  V G+  ++A EL +      +    + 
Sbjct: 119 MQRNKFGRMIFIGSVSGLWGIGNQANYAASKAGVIGMARSIARELSKA----NVTANVVA 174

Query: 192 PFMVDTGLCK--NPKIKMNRLSSLPRG 216
           P  +DT + +  + +I+   L  +P  
Sbjct: 175 PGYIDTDMTRALDERIQQGALQFIPAK 201

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} Length = 260

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

 Score = 46.2 bits (109), Expect = 2e-06
 Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 13/96 (13%)

Query: 130 PDMMEKNRGHIVGIS-------SMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARN 182
             + ++ +G IV  S       + + + G    V Y +SK A   L++ LA E       
Sbjct: 132 LWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVFYNSSKAACSNLVKGLAAEWASA--- 188

Query: 183 SKIKFTSIFPFMVDTGLCK--NPKIKMNRLSSLPRG 216
             I+  ++ P  V+T      + KI+ ++ S++P  
Sbjct: 189 -GIRVNALSPGYVNTDQTAHMDKKIRDHQASNIPLN 223

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 3e-06
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 21  LANLVNLEILTLFNNQIETLPTS-LSSLPKLRILNLGMNRLSSLP 64
                   IL +   +I +LP+  L +L KLR  +     L  LP
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLP 239

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.001
 Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 5/48 (10%)

Query: 43  SLSSLPKLRILNLGMNRLSSLP-RGFGAFPVLEVLDLTYNNLNEQSLP 89
                    IL++   R+ SLP  G      L        NL  + LP
Sbjct: 196 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNL--KKLP 239

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.001
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 3/40 (7%)

Query: 4   ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT 42
              + +S  ++  +P   L NL  L   + +N  ++ LPT
Sbjct: 203 PVILDISRTRIHSLPSYGLENLKKLRARSTYN--LKKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.002
 Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 3/55 (5%)

Query: 5  TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMN 58
                 +K+ EIP  L    N   L     ++  +   + S    L  + +  N
Sbjct: 11 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN 63

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 45.0 bits (106), Expect = 4e-06
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           NL++   + +   P +     G+I+ +SS+AG+V       Y A+K A+  L   LA E 
Sbjct: 117 NLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSATKGALNQLARNLACEW 176

Query: 177 REDARNSKIKFTSIFPFMVDTGLCK---NPKIKMNRLSSLPRG 216
             D     I+  ++ P ++ T L +   + + K   +S  P G
Sbjct: 177 ASD----GIRANAVAPAVIATPLAEAVYDDEFKKVVISRKPLG 215

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 6e-06
 Identities = 19/146 (13%), Positives = 43/146 (29%), Gaps = 4/146 (2%)

Query: 5   TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLS--S 62
             + L+   L     G      +       + ++       S  +++ ++L  + +   +
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 62

Query: 63  LPRGFGAFPVLEVLDLTYNNLNEQSLP--GNFFMLETLRALYLGDNDFEVLPAEIGNLKN 120
           L         L+ L L    L++  +        L  L            L   + +   
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 121 LQIILETFLPDMMEKNRGHIVGISSM 146
           L  +  ++  D  EK+    V   S 
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSE 148

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} Length = 250

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 44.5 bits (104), Expect = 7e-06
 Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 4/91 (4%)

Query: 109 EVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGL 168
           ++LP              +     +      +  I+          ++ Y  SK A+   
Sbjct: 123 KLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAYRMSKAAINMF 182

Query: 169 MEALAEELREDARNSKIKFTSIFPFMVDTGL 199
              LA +L++D     +   +  P  V T L
Sbjct: 183 GRTLAVDLKDD----NVLVVNFCPGWVQTNL 209

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} Length = 257

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

 Score = 43.9 bits (103), Expect = 1e-05
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIF 191
           M+E+  G IV I+S  G  G+ +  PY ASK  V G  +AL  EL        I   ++ 
Sbjct: 127 MLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLELART----GITVNAVC 182

Query: 192 PFMVDTGL 199
           P  V+T +
Sbjct: 183 PGFVETPM 190

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 3e-05
 Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 1   MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNL 55
            L         +        LA L  L+ L L  N I  L  +L+ L  L +L L
Sbjct: 154 RLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.8 bits (81), Expect = 0.004
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 43  SLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDL 78
            L+ L KL+ L L  N +S L         L+VL+L
Sbjct: 173 PLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLEL 207

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.2 bits (97), Expect = 6e-05
 Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 5/61 (8%)

Query: 9  LSHNKLKEIPPGLANLVNLEILTLFNNQI-----ETLPTSLSSLPKLRILNLGMNRLSSL 63
          ++    K +   L    +++ + L  N I       L  +++S   L I          +
Sbjct: 15 ITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRV 74

Query: 64 P 64
           
Sbjct: 75 K 75

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.2 bits (97), Expect = 6e-05
 Identities = 36/295 (12%), Positives = 78/295 (26%), Gaps = 21/295 (7%)

Query: 4   ITRITLSHNKL-----KEIPPGLANLVNLEILTLFNNQI-----------ETLPTSLSSL 47
           +  I LS N +     + +   +A+  +LEI    +                L  +L   
Sbjct: 33  VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC 92

Query: 48  PKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDND 107
           PKL  + L  N      +      + +   L +  L+   L              L  N 
Sbjct: 93  PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNK 152

Query: 108 FEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRG 167
                  + ++   +  LE        K       + ++  +                  
Sbjct: 153 KAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA 212

Query: 168 LMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSL-PRGFGAFPVLEAF 226
             + L     +D   + +  +++   +      +   +    LS+               
Sbjct: 213 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLEN 272

Query: 227 SFTTILDLTYNNLNEQSL----PGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL 277
                L L YN +   ++          +  L  L L  N F      +  ++ +
Sbjct: 273 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 11/76 (14%), Positives = 24/76 (31%), Gaps = 4/76 (5%)

Query: 43  SLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNE---QSLPGNFFMLETLR 99
           S+     L++  +      S+         ++ + L+ N +     + L  N    + L 
Sbjct: 4   SIEGK-SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 62

Query: 100 ALYLGDNDFEVLPAEI 115
                D     +  EI
Sbjct: 63  IAEFSDIFTGRVKDEI 78

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 7/64 (10%), Positives = 22/64 (34%), Gaps = 5/64 (7%)

Query: 26 NLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLS-----SLPRGFGAFPVLEVLDLTY 80
          +L++  +     +++   L     ++ + L  N +       L     +   LE+ + + 
Sbjct: 9  SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 81 NNLN 84
              
Sbjct: 69 IFTG 72

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 297

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (97), Expect = 8e-05
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 128 FLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKF 187
                M+++ G IV    +    G P  V   A++  V  L ++LA E         I+ 
Sbjct: 136 VYSSWMKEHGGSIV-NIIVPTKAGFPLAVHSGAARAGVYNLTKSLALEWACS----GIRI 190

Query: 188 TSIFPFMVDT 197
             + P ++ +
Sbjct: 191 NCVAPGVIYS 200

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

 Score = 40.6 bits (94), Expect = 8e-05
 Identities = 8/67 (11%), Positives = 17/67 (25%), Gaps = 4/67 (5%)

Query: 117 NLKNLQIILETFLPDMMEKNR-GHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEE 175
            +              ++    G   G     G +G+   +     +  +  L E+    
Sbjct: 119 EIVADYNAQPPLGIGGIDATDKGKEYGGKRAFGALGIGG-LKLKLHRACIAKLFESSEGV 177

Query: 176 LREDARN 182
              DA  
Sbjct: 178 F--DAEE 182

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 2e-04
 Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 3/106 (2%)

Query: 5   TRITLSHNKLKEIPPGLANLVNLEILTLFNNQ-IETLPT-SLSSLPKLRILNLGMNRLSS 62
           + +  + +   +    L    NL  L + N Q ++ L    L  L +LR L +  + L  
Sbjct: 11  SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70

Query: 63  LPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDF 108
           +      F           N   +SL        +L+ L L  N  
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNAL-ESLSWKTVQGLSLQELVLSGNPL 115

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 27/116 (23%), Positives = 41/116 (35%), Gaps = 2/116 (1%)

Query: 9   LSHNKLKEIPPG-LANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPRG 66
           L  N L+ +P     +L NL  L L  N+I ++P  +   L  L  L L  NR++ +   
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 67  FGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQ 122
                   +    + N            L  L+ L L DN +            LQ
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQ 251

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 34/151 (22%), Positives = 47/151 (31%), Gaps = 30/151 (19%)

Query: 4   ITRITLSHNKLKEIPPG-LANLVNLEILTLFNNQIET----------------------- 39
             RI L  N++  +P        NL IL L +N +                         
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 40  ---LPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPV-LEVLDLTYNNLNEQSLPGNFFML 95
               P +   L +L  L+L    L  L  G       L+ L L  N L        F  L
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDL 152

Query: 96  ETLRALYLGDNDFEVLPAE-IGNLKNLQIIL 125
             L  L+L  N    +P      L +L  +L
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 4/83 (4%)

Query: 117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL 176
           NL  + + +   +  M E  RG I+ ISS+ G+ G      Y A+KFAVRGL ++ A EL
Sbjct: 111 NLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALEL 170

Query: 177 REDARNSKIKFTSIFPFMVDTGL 199
                   I+  SI P +V T +
Sbjct: 171 GPS----GIRVNSIHPGLVKTPM 189

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} Length = 234

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 7/88 (7%)

Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIF 191
           M EK  G IV I+S + I  + NL    +++ A+ G ++ L+ E+        I    + 
Sbjct: 112 MKEKGWGRIVAITSFSVISPIENLYTSNSARMALTGFLKTLSFEVAPY----GITVNCVA 167

Query: 192 PFMVDTGLCK---NPKIKMNRLSSLPRG 216
           P   +T   K   + + K    S +P  
Sbjct: 168 PGWTETERVKELLSEEKKKQVESQIPMR 195

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 38.9 bits (89), Expect = 3e-04
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 12 NKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMN 58
            ++++   L+ L   + L L  N IE +  SLS +  LRIL+LG N
Sbjct: 35 PPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN 80

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 38.9 bits (89), Expect = 3e-04
 Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 3/62 (4%)

Query: 23 NLVNLEILTLFNN--QIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTY 80
               E + L      IE +  +LS+L   + L L  N +  +         L +L L  
Sbjct: 21 VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGR 79

Query: 81 NN 82
          N 
Sbjct: 80 NL 81

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} Length = 266

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 39.1 bits (90), Expect = 4e-04
 Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 4/87 (4%)

Query: 130 PDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTS 189
                     +V +      + LP    Y  +K A+ GL  A A EL        I+  +
Sbjct: 144 GGAWRSRNLSVVNLCDAMTDLPLPGFCVYTMAKHALGGLTRAAALELAPR----HIRVNA 199

Query: 190 IFPFMVDTGLCKNPKIKMNRLSSLPRG 216
           + P +         + +      +P G
Sbjct: 200 VAPGLSLLPPAMPQETQEEYRRKVPLG 226

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 272

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

 Score = 38.6 bits (89), Expect = 6e-04
 Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 132 MMEKNRGHIVGISSMAGIVG-LPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSI 190
              +  G ++ + S+ G    +P    Y  SK A+      +A ++ +     KI    +
Sbjct: 140 KHLEIGGRLILMGSITGQAKAVPKHAVYSGSKGAIETFARCMAIDMADK----KITVNVV 195

Query: 191 FPFMVDTGL 199
            P  + T +
Sbjct: 196 APGGIKTDM 204

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 11  HNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRIL 53
            N++ ++ P LANL  LE L + +N++  +   L+ L  L  L
Sbjct: 159 SNQVTDLKP-LANLTTLERLDISSNKVSDIS-VLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 6  RITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMN 58
          +  L    + +      +L  +  L      I+++   +  L  L  +N   N
Sbjct: 22 KTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNN 72

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} Length = 241

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 7/87 (8%)

Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIF 191
            + +  G +V   S+AG+     L  Y A K  V GL   LA EL        ++   + 
Sbjct: 123 EVLEEGGSLVLTGSVAGLGA-FGLAHYAAGKLGVVGLARTLALELARK----GVRVNVLL 177

Query: 192 PFMVDTGLCKN--PKIKMNRLSSLPRG 216
           P ++ T +     P      + + P G
Sbjct: 178 PGLIQTPMTAGLPPWAWEQEVGASPLG 204

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} Length = 261

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

 Score = 36.6 bits (84), Expect = 0.003
 Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 8/89 (8%)

Query: 132 MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIF 191
           +    +G ++ +SS+   +  P  V Y ASK  ++ + E LA E         I+  +I 
Sbjct: 132 VENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYAPK----GIRVNNIG 187

Query: 192 PFMVDTGLCK----NPKIKMNRLSSLPRG 216
           P  ++T +      +P+ + +  S +P G
Sbjct: 188 PGAINTPINAEKFADPEQRADVESMIPMG 216

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	352
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.93
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.87
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.86
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.84
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.84
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.83
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.79
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.76
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.76
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.76
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.74
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.73
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.68
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.65
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.62
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.58
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.52
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.51
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.49
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.49
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.36
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.32
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.29
d2fug61	161	NAD-quinone oxidoreductase chain 6, Nqo6 {Thermus	99.26
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.23
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.94
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.73
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.7
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.52
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.31
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.13
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.93
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.39
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.36
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.93
d1frfs_	261	Nickel-iron hydrogenase, small subunit {Desulfovib	95.74
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	95.49
d1wuis1	267	Nickel-iron hydrogenase, small subunit {Desulfovib	95.27
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	94.88
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	94.81
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	94.74
d1yq9a1	261	Nickel-iron hydrogenase, small subunit {Desulfovib	94.65
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	94.64
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	94.6
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	94.55
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	94.47
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	94.28
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	94.25
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	94.23
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	94.17
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	94.07
d1cc1s_	278	Nickel-iron hydrogenase, small subunit {Desulfomic	93.88
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	93.6
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	93.49
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	93.47
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	93.4
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	92.99
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	92.57
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	92.31
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	92.26
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	91.93
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	91.92
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	91.72
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	91.11
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	91.1
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	91.07
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	90.16
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	90.15
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	89.84
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	89.83
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	89.83
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	89.79
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	89.1
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	89.05
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	88.75
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	88.12
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	87.81
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	87.27
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	86.93
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	86.79
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	86.42
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	86.23
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	84.91

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=1.1e-29  Score=229.11  Aligned_cols=237  Identities=22%  Similarity=0.300  Sum_probs=187.6

Q ss_pred             CccEEEeeCCcCc---ccCccccCCCCCCEEEccC-CcCc-ccccccCCCCCCcEEEccCCCCCcc-ccccCCCCCCCEE
Q psy5270           3 YITRITLSHNKLK---EIPPGLANLVNLEILTLFN-NQIE-TLPTSLSSLPKLRILNLGMNRLSSL-PRGFGAFPVLEVL   76 (352)
Q Consensus         3 ~L~~L~Ls~N~l~---~ip~~l~~l~~L~~L~L~~-N~l~-~ip~~l~~L~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L   76 (352)
                      +++.|||++|.++   +||++++++++|++|+|++ |+++ .+|+++++|++|++|+|++|+++.+ |..+..+.+|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            6899999999997   5899999999999999996 8898 8999999999999999999999954 5668999999999


Q ss_pred             EccCCCCCCCCCCCccccCccCcEEEccCCccc-cchhhccCcccH-HHHHHhcchhhHhhcCceEeeccccccccCCCC
Q psy5270          77 DLTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNL-QIILETFLPDMMEKNRGHIVGISSMAGIVGLPN  154 (352)
Q Consensus        77 ~Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~-~ip~~~~nl~~L-~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~  154 (352)
                      ++++|.+.+ .+|.+++++++|+++++++|+++ .+|..++++.++ +.++.+.         ..+.+... ..+..+..
T Consensus       131 ~l~~N~~~~-~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~---------n~l~~~~~-~~~~~l~~  199 (313)
T d1ogqa_         131 DFSYNALSG-TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR---------NRLTGKIP-PTFANLNL  199 (313)
T ss_dssp             ECCSSEEES-CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCS---------SEEEEECC-GGGGGCCC
T ss_pred             ccccccccc-cCchhhccCcccceeecccccccccccccccccccccccccccc---------cccccccc-cccccccc
Confidence            999999998 89999999999999999999999 799998887765 2222111         11111100 00111110


Q ss_pred             ccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc-ccCCccCcccccccCCCcccCCCCCcccchhhhhhhhh
Q psy5270         155 LVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV-DTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILD  233 (352)
Q Consensus       155 l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~-~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~  233 (352)
                      .                       .+..+.+.+.+.+|... ....++.+++++|.++..+..++.++.+      +.||
T Consensus       200 ~-----------------------~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L------~~L~  250 (313)
T d1ogqa_         200 A-----------------------FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL------NGLD  250 (313)
T ss_dssp             S-----------------------EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTC------CEEE
T ss_pred             c-----------------------cccccccccccccccccccccccccccccccccccccccccccccc------cccc
Confidence            0                       12344566777776554 4456777888899888555567777777      7999


Q ss_pred             hccccccccCCCchhhhhHHhHhhhCCCCcce-ecchhhhccccccccc
Q psy5270         234 LTYNNLNEQSLPGNFFMLETLRALYLGDNDFE-VLPAEIGNLKNLQIML  281 (352)
Q Consensus       234 ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~-~iP~~l~~l~~L~~l~  281 (352)
                      |++|+++| .+|++|+++++|++|||++|+|+ .||+ ++++++|+.+.
T Consensus       251 Ls~N~l~g-~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~  297 (313)
T d1ogqa_         251 LRNNRIYG-TLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSA  297 (313)
T ss_dssp             CCSSCCEE-CCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGG
T ss_pred             CccCeecc-cCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHH
Confidence            99999999 89999999999999999999999 8984 68888888764

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.93  E-value=6.4e-27  Score=210.74  Aligned_cols=223  Identities=20%  Similarity=0.296  Sum_probs=178.4

Q ss_pred             CCCccEEEeeC-CcCc-ccCccccCCCCCCEEEccCCcCcc-cccccCCCCCCcEEEccCCCCC-ccccccCCCCCCCEE
Q psy5270           1 MLYITRITLSH-NKLK-EIPPGLANLVNLEILTLFNNQIET-LPTSLSSLPKLRILNLGMNRLS-SLPRGFGAFPVLEVL   76 (352)
Q Consensus         1 l~~L~~L~Ls~-N~l~-~ip~~l~~l~~L~~L~L~~N~l~~-ip~~l~~L~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L   76 (352)
                      |++|++|||++ |+++ +||++|+++++|++|+|++|++.. .|..+..+.+|+.+++++|++. .+|.+++++++|+.+
T Consensus        75 L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l  154 (313)
T d1ogqa_          75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             CccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCccccee
Confidence            57899999996 8898 999999999999999999999994 5677999999999999999988 889999999999999


Q ss_pred             EccCCCCCCCCCCCccccCccC-cEEEccCCccc-cchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCC
Q psy5270          77 DLTYNNLNEQSLPGNFFMLETL-RALYLGDNDFE-VLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPN  154 (352)
Q Consensus        77 ~Ls~N~l~g~~~p~~~~~l~~L-~~L~l~~N~l~-~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~  154 (352)
                      ++++|.++| .+|+.++.+.++ +.+++++|+++ ..|..++++.... +++..         ...... .......++.
T Consensus       155 ~l~~n~l~~-~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~-l~l~~---------~~~~~~-~~~~~~~~~~  222 (313)
T d1ogqa_         155 TFDGNRISG-AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF-VDLSR---------NMLEGD-ASVLFGSDKN  222 (313)
T ss_dssp             ECCSSCCEE-ECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSE-EECCS---------SEEEEC-CGGGCCTTSC
T ss_pred             ecccccccc-cccccccccccccccccccccccccccccccccccccc-ccccc---------cccccc-cccccccccc
Confidence            999999998 799999999876 89999999999 5677777654332 22211         011100 0011111222


Q ss_pred             ccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCC-CcccCCCCCcccchhhhhhhhh
Q psy5270         155 LVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLS-SLPRGFGAFPVLEAFSFTTILD  233 (352)
Q Consensus       155 l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~-~ip~~~~~l~~L~~~~~L~~L~  233 (352)
                      +.                      .+..+++.+.+.+|.......++.+++++|+++ .+|+++++++.|      ++||
T Consensus       223 l~----------------------~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L------~~L~  274 (313)
T d1ogqa_         223 TQ----------------------KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL------HSLN  274 (313)
T ss_dssp             CS----------------------EEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTC------CEEE
T ss_pred             cc----------------------ccccccccccccccccccccccccccCccCeecccCChHHhCCCCC------CEEE
Confidence            21                      123456778887776666778889999999999 999999999888      7999


Q ss_pred             hccccccccCCCchhhhhHHhHhhhCCCCcce
Q psy5270         234 LTYNNLNEQSLPGNFFMLETLRALYLGDNDFE  265 (352)
Q Consensus       234 ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~  265 (352)
                      |++|+|+| .||. ++++++|+.+++++|++-
T Consensus       275 Ls~N~l~g-~iP~-~~~L~~L~~l~l~~N~~l  304 (313)
T d1ogqa_         275 VSFNNLCG-EIPQ-GGNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             CCSSEEEE-ECCC-STTGGGSCGGGTCSSSEE
T ss_pred             CcCCcccc-cCCC-cccCCCCCHHHhCCCccc
Confidence            99999999 7985 689999999999999843

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.9e-24  Score=187.28  Aligned_cols=195  Identities=28%  Similarity=0.362  Sum_probs=148.6

Q ss_pred             CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccc-cccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccC
Q psy5270           2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLP-TSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTY   80 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip-~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~   80 (352)
                      +.+.+.|.+++.+++||+++.  +++++|+|++|+++.+| ..|.++++|++|+|++|+++.+|. ++.+++|+.|++++
T Consensus        10 ~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~   86 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSH   86 (266)
T ss_dssp             TTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCS
T ss_pred             CCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-cccccccccccccc
Confidence            456678999999999999886  58999999999999886 579999999999999999999875 58899999999999


Q ss_pred             CCCCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccc
Q psy5270          81 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYC  159 (352)
Q Consensus        81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~  159 (352)
                      |++++  +|..+.++++|++|++++|.+..++. .+..+.+++.+++                                 
T Consensus        87 N~l~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l---------------------------------  131 (266)
T d1p9ag_          87 NQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL---------------------------------  131 (266)
T ss_dssp             SCCSS--CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC---------------------------------
T ss_pred             ccccc--cccccccccccccccccccccceeeccccccccccccccc---------------------------------
Confidence            99986  68899999999999999999987654 3444444332211                                 


Q ss_pred             cchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc-ccCCccCcccccccCCCcccC-CCCCcccchhhhhhhhhhccc
Q psy5270         160 ASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV-DTGLCKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTILDLTYN  237 (352)
Q Consensus       160 ~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~-~~~~l~~l~l~~n~l~~ip~~-~~~l~~L~~~~~L~~L~ls~N  237 (352)
                                             ++|.+..+.+..+ ....+..+++++|+++.+|.+ ++.+++|      +.|||++|
T Consensus       132 -----------------------~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L------~~L~Ls~N  182 (266)
T d1p9ag_         132 -----------------------KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL------DTLLLQEN  182 (266)
T ss_dssp             -----------------------TTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTC------CEEECCSS
T ss_pred             -----------------------cccccceeccccccccccchhcccccccccccCcccccccccc------ceeecccC
Confidence                                   1233333333222 234556677788888766543 5556666      67888888


Q ss_pred             cccccCCCchhhhhHHhHhhhCCCCcce
Q psy5270         238 NLNEQSLPGNFFMLETLRALYLGDNDFE  265 (352)
Q Consensus       238 ~l~g~~iP~~~~~l~~L~~L~Ls~N~l~  265 (352)
                      +|+  .+|+.+..+++|+.|+|++|.+.
T Consensus       183 ~L~--~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         183 SLY--TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCC--CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CCc--ccChhHCCCCCCCEEEecCCCCC
Confidence            886  47877778888888888888775

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=9.9e-23  Score=178.86  Aligned_cols=176  Identities=26%  Similarity=0.293  Sum_probs=147.3

Q ss_pred             CCccEEEeeCCcCcccCc-cccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccC
Q psy5270           2 LYITRITLSHNKLKEIPP-GLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTY   80 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~-~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~   80 (352)
                      +++++|||++|+|+++|+ .|.++++|++|+|++|+++.+|. ++.+++|++|++++|+++.+|..+.++++|+.|++++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~  109 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF  109 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCS
T ss_pred             cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            468999999999998875 68999999999999999998875 6889999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCccccCccCcEEEccCCccccchhh-ccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccc
Q psy5270          81 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYC  159 (352)
Q Consensus        81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~-~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~  159 (352)
                      |.+.+ ..+..+..+.++++|++++|.++.+|.. +..+++++.++                                  
T Consensus       110 ~~~~~-~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~----------------------------------  154 (266)
T d1p9ag_         110 NRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS----------------------------------  154 (266)
T ss_dssp             SCCCC-CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE----------------------------------
T ss_pred             cccce-eeccccccccccccccccccccceeccccccccccchhcc----------------------------------
Confidence            99987 4566788899999999999999987764 44455444322                                  


Q ss_pred             cchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc-ccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhcccc
Q psy5270         160 ASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV-DTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNN  238 (352)
Q Consensus       160 ~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~-~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~  238 (352)
                                            +++|+++++.+..+ ....++.+++++|+++.||.++..++.|      +.|+|++|.
T Consensus       155 ----------------------l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L------~~L~L~~Np  206 (266)
T d1p9ag_         155 ----------------------LANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL------PFAFLHGNP  206 (266)
T ss_dssp             ----------------------CTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCC------SEEECCSCC
T ss_pred             ----------------------cccccccccCccccccccccceeecccCCCcccChhHCCCCCC------CEEEecCCC
Confidence                                  23455555555443 4567889999999999999998888877      799999999


Q ss_pred             ccc
Q psy5270         239 LNE  241 (352)
Q Consensus       239 l~g  241 (352)
                      +..
T Consensus       207 ~~C  209 (266)
T d1p9ag_         207 WLC  209 (266)
T ss_dssp             BCC
T ss_pred             CCC
Confidence            874

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.87  E-value=5.5e-23  Score=189.22  Aligned_cols=81  Identities=23%  Similarity=0.337  Sum_probs=64.3

Q ss_pred             CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCC
Q psy5270           2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYN   81 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N   81 (352)
                      .+|++|++++++++.+ +++..+++|++|+|++|+++.+|+ ++++++|++|++++|+++.+++ ++++++|+.|++++|
T Consensus        44 ~~l~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~~~~~  120 (384)
T d2omza2          44 DQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN  120 (384)
T ss_dssp             TTCCEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred             CCCCEEECCCCCCCCc-cccccCCCCCEEeCcCCcCCCCcc-ccCCcccccccccccccccccc-ccccccccccccccc
Confidence            4678888888888877 467788888888888888887764 8888888888888888887764 778888888888877


Q ss_pred             CCCC
Q psy5270          82 NLNE   85 (352)
Q Consensus        82 ~l~g   85 (352)
                      .+++
T Consensus       121 ~~~~  124 (384)
T d2omza2         121 QITD  124 (384)
T ss_dssp             CCCC
T ss_pred             cccc
Confidence            7653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.7e-22  Score=176.82  Aligned_cols=216  Identities=25%  Similarity=0.309  Sum_probs=130.2

Q ss_pred             EEEeeCCcCcccCccccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEcc-CCC
Q psy5270           6 RITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDLT-YNN   82 (352)
Q Consensus         6 ~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls-~N~   82 (352)
                      .++.++.+++++|..+.  +++++|+|++|+++++|+ +|.++++|++|++++|++..++. .+..++.++.++.. .|.
T Consensus        15 ~v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EEECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            45677777777877665  467888888888887764 57788888888888888875544 35667777777654 445


Q ss_pred             CCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccc
Q psy5270          83 LNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCAS  161 (352)
Q Consensus        83 l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s  161 (352)
                      ++. ..|..|.++++|++|++++|.+..++. .++...+|+.++++                                  
T Consensus        93 ~~~-l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~----------------------------------  137 (284)
T d1ozna_          93 LRS-VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ----------------------------------  137 (284)
T ss_dssp             CCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC----------------------------------
T ss_pred             ccc-ccchhhcccccCCEEecCCcccccccccccchhcccchhhhc----------------------------------
Confidence            554 346677778888888888887775443 44444444332221                                  


Q ss_pred             hhhhhhhhHHhHHHHHHHHhcCCceeecccCccc-ccCCccCcccccccCCCccc-CCCCCcccchhhhhhhhhhccccc
Q psy5270         162 KFAVRGLMEALAEELREDARNSKIKFTSIFPFMV-DTGLCKNPKIKMNRLSSLPR-GFGAFPVLEAFSFTTILDLTYNNL  239 (352)
Q Consensus       162 ~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~-~~~~l~~l~l~~n~l~~ip~-~~~~l~~L~~~~~L~~L~ls~N~l  239 (352)
                                            +|+++++.+..+ ....++.+++++|+++.+|. .+..++.|      +.+++++|++
T Consensus       138 ----------------------~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L------~~l~l~~N~l  189 (284)
T d1ozna_         138 ----------------------DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL------DRLLLHQNRV  189 (284)
T ss_dssp             ----------------------SSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC------CEEECCSSCC
T ss_pred             ----------------------cccccccChhHhccccchhhcccccCcccccchhhhcccccc------chhhhhhccc
Confidence                                  222333222222 23344555666666665433 33444444      4666666666


Q ss_pred             cccCCCchhhhhHHhHhhhCCCCccee-cchhhhcccccccccCCceee
Q psy5270         240 NEQSLPGNFFMLETLRALYLGDNDFEV-LPAEIGNLKNLQIMLEPRWVI  287 (352)
Q Consensus       240 ~g~~iP~~~~~l~~L~~L~Ls~N~l~~-iP~~l~~l~~L~~l~~~~~~~  287 (352)
                      ++ ..|..|..+++|++||+++|+++. .|..++++.+|+.+...+++.
T Consensus       190 ~~-i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         190 AH-VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             CE-ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             cc-cChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCC
Confidence            65 456666666666666666666663 334466666666665444443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.5e-21  Score=172.77  Aligned_cols=200  Identities=28%  Similarity=0.361  Sum_probs=163.1

Q ss_pred             CCccEEEeeCCcCcccCc-cccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEcc-CCCCCcc-ccccCCCCCCCEEE
Q psy5270           2 LYITRITLSHNKLKEIPP-GLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLG-MNRLSSL-PRGFGAFPVLEVLD   77 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~-~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~-~N~l~~i-p~~~~~l~~L~~L~   77 (352)
                      +.+++|||++|+|+++|+ .|.++++|++|++++|++..+ +..+..++.++.++.. .|.++.+ |..|.++++|+.|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            367999999999999986 589999999999999999966 4567788999999875 5567777 55699999999999


Q ss_pred             ccCCCCCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCcc
Q psy5270          78 LTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLV  156 (352)
Q Consensus        78 Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~  156 (352)
                      +++|.+.+ ..+..+....+|+.+++++|+++.+|+ .|.++++|+.++                               
T Consensus       112 l~~n~~~~-~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~-------------------------------  159 (284)
T d1ozna_         112 LDRCGLQE-LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF-------------------------------  159 (284)
T ss_dssp             CTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE-------------------------------
T ss_pred             cCCccccc-ccccccchhcccchhhhccccccccChhHhccccchhhcc-------------------------------
Confidence            99999986 456678889999999999999998865 566666555432                               


Q ss_pred             ccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc-ccCCccCcccccccCCCc-ccCCCCCcccchhhhhhhhhh
Q psy5270         157 PYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV-DTGLCKNPKIKMNRLSSL-PRGFGAFPVLEAFSFTTILDL  234 (352)
Q Consensus       157 ~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~-~~~~l~~l~l~~n~l~~i-p~~~~~l~~L~~~~~L~~L~l  234 (352)
                                               +++|++.++.+..+ ....++.+++++|+++.+ |..+..++++      ++||+
T Consensus       160 -------------------------l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L------~~L~l  208 (284)
T d1ozna_         160 -------------------------LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL------MTLYL  208 (284)
T ss_dssp             -------------------------CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC------CEEEC
T ss_pred             -------------------------cccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhc------ccccc
Confidence                                     22445555444433 456788889999999955 7788888877      69999


Q ss_pred             ccccccccCCCchhhhhHHhHhhhCCCCcce
Q psy5270         235 TYNNLNEQSLPGNFFMLETLRALYLGDNDFE  265 (352)
Q Consensus       235 s~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~  265 (352)
                      ++|++++ ..|..|+.+.+|++|++++|.+.
T Consensus       209 ~~N~i~~-~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         209 FANNLSA-LPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CSSCCSC-CCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccccccc-ccccccccccccCEEEecCCCCC
Confidence            9999997 56778999999999999999998

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=2e-21  Score=173.66  Aligned_cols=238  Identities=22%  Similarity=0.293  Sum_probs=161.9

Q ss_pred             ccEEEeeCCcCcccCccccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCcc-ccccCCCCCCCEEEccCC
Q psy5270           4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSSL-PRGFGAFPVLEVLDLTYN   81 (352)
Q Consensus         4 L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~Ls~N   81 (352)
                      .+.+|-+++.++++|+++.  +++++|+|++|+++++|+ +|.++++|++|++++|.++.+ |..|.++++|+.|++++|
T Consensus        12 ~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             TTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence            4678999999999999885  589999999999999986 799999999999999999987 556999999999999999


Q ss_pred             CCCCCCCCCccccCccCcEEEccCCccccchhh-ccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCcccccc
Q psy5270          82 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCA  160 (352)
Q Consensus        82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~-~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~  160 (352)
                      +++.  +|..+.  ..++.|++.+|.+..++.. +........+.....+...        .......+..++.+...  
T Consensus        90 ~l~~--l~~~~~--~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~--------~~~~~~~~~~l~~L~~l--  155 (305)
T d1xkua_          90 QLKE--LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS--------SGIENGAFQGMKKLSYI--  155 (305)
T ss_dssp             CCSB--CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG--------GGBCTTGGGGCTTCCEE--
T ss_pred             ccCc--Cccchh--hhhhhhhccccchhhhhhhhhhccccccccccccccccc--------cCCCccccccccccCcc--
Confidence            9985  777553  5799999999999976653 3332222211111100000        00000111112222111  


Q ss_pred             chhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCC-CcccCCCCCcccchhhhhhhhhhccccc
Q psy5270         161 SKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLS-SLPRGFGAFPVLEAFSFTTILDLTYNNL  239 (352)
Q Consensus       161 s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~-~ip~~~~~l~~L~~~~~L~~L~ls~N~l  239 (352)
                                          ..+.+.+..+ |.. ....++.+++++|..+ ..+..+..++.+      +.|++++|.+
T Consensus       156 --------------------~l~~n~l~~l-~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~l------~~L~~s~n~l  207 (305)
T d1xkua_         156 --------------------RIADTNITTI-PQG-LPPSLTELHLDGNKITKVDAASLKGLNNL------AKLGLSFNSI  207 (305)
T ss_dssp             --------------------ECCSSCCCSC-CSS-CCTTCSEEECTTSCCCEECTGGGTTCTTC------CEEECCSSCC
T ss_pred             --------------------ccccCCcccc-Ccc-cCCccCEEECCCCcCCCCChhHhhccccc------cccccccccc
Confidence                                1223333322 211 1234566777777777 445556556555      6788888888


Q ss_pred             cccCCCchhhhhHHhHhhhCCCCcceecchhhhcccccccccCCcee
Q psy5270         240 NEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIMLEPRWV  286 (352)
Q Consensus       240 ~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP~~l~~l~~L~~l~~~~~~  286 (352)
                      ++ ..|..+..+++|++|+|++|+|+.||++++++++|+++...++.
T Consensus       208 ~~-~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~  253 (305)
T d1xkua_         208 SA-VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN  253 (305)
T ss_dssp             CE-ECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC
T ss_pred             cc-cccccccccccceeeecccccccccccccccccCCCEEECCCCc
Confidence            86 45777888888888888888888888888888888887544443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.83  E-value=8.1e-22  Score=181.26  Aligned_cols=252  Identities=21%  Similarity=0.263  Sum_probs=173.9

Q ss_pred             CCCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccc----------------
Q psy5270           1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP----------------   64 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip----------------   64 (352)
                      |++|++||+++|+|+.+|+ ++++++|++|++++|+++.+++ ++++++|+.|++++|.++.++                
T Consensus        65 L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (384)
T d2omza2          65 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN  142 (384)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEE
T ss_pred             CCCCCEEeCcCCcCCCCcc-ccCCcccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            5789999999999998875 9999999999999999998764 899999999999988775321                


Q ss_pred             ------------------------------------------------cccCCCCCCCEEEccCCCCCCCCCCCccccCc
Q psy5270          65 ------------------------------------------------RGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLE   96 (352)
Q Consensus        65 ------------------------------------------------~~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~   96 (352)
                                                                      ..+..+++++.+++++|.+++  ++ .++..+
T Consensus       143 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~--~~-~~~~~~  219 (384)
T d2omza2         143 TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD--IT-PLGILT  219 (384)
T ss_dssp             EECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC--CG-GGGGCT
T ss_pred             cccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCC--CC-cccccC
Confidence                                                            123446778889999999886  33 256678


Q ss_pred             cCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHH
Q psy5270          97 TLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEEL  176 (352)
Q Consensus        97 ~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l  176 (352)
                      +|++|++++|+++.+| .+..+++|+.++++..         .+.+   ...+...+.+.....+.+.+.+.........
T Consensus       220 ~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n---------~l~~---~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~  286 (384)
T d2omza2         220 NLDELSLNGNQLKDIG-TLASLTNLTDLDLANN---------QISN---LAPLSGLTKLTELKLGANQISNISPLAGLTA  286 (384)
T ss_dssp             TCCEEECCSSCCCCCG-GGGGCTTCSEEECCSS---------CCCC---CGGGTTCTTCSEEECCSSCCCCCGGGTTCTT
T ss_pred             CCCEEECCCCCCCCcc-hhhcccccchhccccC---------ccCC---CCcccccccCCEeeccCcccCCCCccccccc
Confidence            8999999999988765 4566666665544431         1111   1122233333333333322222111000000


Q ss_pred             HHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhccccccccCCCchhhhhHHhHh
Q psy5270         177 REDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRA  256 (352)
Q Consensus       177 ~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~  256 (352)
                      ...+..+.+++.+. +.......++.+++++|+++.++. +..+++|      +.|++++|++++  +| .+.++++|++
T Consensus       287 l~~l~~~~n~l~~~-~~~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L------~~L~L~~n~l~~--l~-~l~~l~~L~~  355 (384)
T d2omza2         287 LTNLELNENQLEDI-SPISNLKNLTYLTLYFNNISDISP-VSSLTKL------QRLFFANNKVSD--VS-SLANLTNINW  355 (384)
T ss_dssp             CSEEECCSSCCSCC-GGGGGCTTCSEEECCSSCCSCCGG-GGGCTTC------CEEECCSSCCCC--CG-GGGGCTTCCE
T ss_pred             cccccccccccccc-cccchhcccCeEECCCCCCCCCcc-cccCCCC------CEEECCCCCCCC--Ch-hHcCCCCCCE
Confidence            01223344555553 234455677888999999997763 5556666      799999999985  55 6999999999


Q ss_pred             hhCCCCcceecchhhhcccccccccC
Q psy5270         257 LYLGDNDFEVLPAEIGNLKNLQIMLE  282 (352)
Q Consensus       257 L~Ls~N~l~~iP~~l~~l~~L~~l~~  282 (352)
                      |++++|+++.+|+ ++++++|+.|..
T Consensus       356 L~l~~N~l~~l~~-l~~l~~L~~L~L  380 (384)
T d2omza2         356 LSAGHNQISDLTP-LANLTRITQLGL  380 (384)
T ss_dssp             EECCSSCCCBCGG-GTTCTTCSEEEC
T ss_pred             EECCCCcCCCChh-hccCCCCCEeeC
Confidence            9999999997775 899999998743

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=1.7e-19  Score=150.92  Aligned_cols=176  Identities=19%  Similarity=0.308  Sum_probs=123.0

Q ss_pred             EeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCCCCCCC
Q psy5270           8 TLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQS   87 (352)
Q Consensus         8 ~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~g~~   87 (352)
                      +++.+.++.++. ...+.++++|++++|.++.++ .+..+++|++|++++|+++.+++ ++++++|+.|++++|.+..  
T Consensus        24 ~l~~~~~~~~~~-~~~l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~--   98 (199)
T d2omxa2          24 VLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIAD--   98 (199)
T ss_dssp             HTTCSSTTSEEC-HHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC--
T ss_pred             HhCCCCCCCccC-HHHhcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc-ccCCccccccccccccccc--
Confidence            455566653221 234567888888888888764 47788888888888888887765 7888888888888888764  


Q ss_pred             CCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhh
Q psy5270          88 LPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRG  167 (352)
Q Consensus        88 ~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~  167 (352)
                      +| .++++++|++|++++|.+..++. +.++++|                                              
T Consensus        99 ~~-~l~~l~~L~~L~l~~~~~~~~~~-~~~l~~L----------------------------------------------  130 (199)
T d2omxa2          99 IT-PLANLTNLTGLTLFNNQITDIDP-LKNLTNL----------------------------------------------  130 (199)
T ss_dssp             CG-GGTTCTTCSEEECCSSCCCCCGG-GTTCTTC----------------------------------------------
T ss_pred             cc-ccccccccccccccccccccccc-cchhhhh----------------------------------------------
Confidence            44 47788888888888888775432 3333322                                              


Q ss_pred             hhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhccccccccCCCch
Q psy5270         168 LMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGN  247 (352)
Q Consensus       168 ~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~~  247 (352)
                                                       +.+++++|++..+| .+..++.+      +.|++++|++++  ++ .
T Consensus       131 ---------------------------------~~L~l~~n~l~~~~-~l~~~~~L------~~L~l~~n~l~~--l~-~  167 (199)
T d2omxa2         131 ---------------------------------NRLELSSNTISDIS-ALSGLTSL------QQLNFSSNQVTD--LK-P  167 (199)
T ss_dssp             ---------------------------------SEEECCSSCCCCCG-GGTTCTTC------SEEECCSSCCCC--CG-G
T ss_pred             ---------------------------------HHhhhhhhhhcccc-cccccccc------cccccccccccC--Cc-c
Confidence                                             22334445554443 23444455      688899999875  44 4


Q ss_pred             hhhhHHhHhhhCCCCcceecchhhhcccccccc
Q psy5270         248 FFMLETLRALYLGDNDFEVLPAEIGNLKNLQIM  280 (352)
Q Consensus       248 ~~~l~~L~~L~Ls~N~l~~iP~~l~~l~~L~~l  280 (352)
                      ++++++|++|++++|+++.|| .++++++|+.|
T Consensus       168 l~~l~~L~~L~ls~N~i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         168 LANLTTLERLDISSNKVSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             GTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred             ccCCCCCCEEECCCCCCCCCc-cccCCCCCCcC
Confidence            888999999999999998876 47788887753

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=1.6e-18  Score=133.38  Aligned_cols=106  Identities=25%  Similarity=0.302  Sum_probs=95.7

Q ss_pred             cEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCCCC
Q psy5270           5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLN   84 (352)
Q Consensus         5 ~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~   84 (352)
                      ++|||++|+++.+|. ++++++|++|++++|+++.+|+.++.+++|+.|++++|+++.+|. ++++++|+.|++++|+++
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCc-cccccccCeEECCCCccC
Confidence            579999999998874 899999999999999999999999999999999999999999974 899999999999999998


Q ss_pred             CCCCCCccccCccCcEEEccCCccccch
Q psy5270          85 EQSLPGNFFMLETLRALYLGDNDFEVLP  112 (352)
Q Consensus        85 g~~~p~~~~~l~~L~~L~l~~N~l~~ip  112 (352)
                      ...-...++.+++|++|++++|+++.++
T Consensus        79 ~~~~~~~l~~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          79 QSAAIQPLVSCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             CCCCchhhcCCCCCCEEECCCCcCCcCc
Confidence            6222357899999999999999998543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=1.1e-18  Score=149.10  Aligned_cols=199  Identities=20%  Similarity=0.278  Sum_probs=137.7

Q ss_pred             EEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCCCCCC
Q psy5270           7 ITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQ   86 (352)
Q Consensus         7 L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~g~   86 (352)
                      ++++.++++.+. .+..+.+|++|++.+|.++.++ .+..+++|++|++++|+++.+++ +..+++|+.+++++|.++. 
T Consensus        24 ~~l~~~~~~d~~-~~~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~-   99 (227)
T d1h6ua2          24 IAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN-   99 (227)
T ss_dssp             HHTTCSSTTSEE-CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-
T ss_pred             HHhCCCCcCCcC-CHHHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeecccc-ccccccccccccccccccc-
Confidence            455566666321 3455678899999999888874 58889999999999999887764 7888899999999998864 


Q ss_pred             CCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhh
Q psy5270          87 SLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVR  166 (352)
Q Consensus        87 ~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~  166 (352)
                       ++ .++.+++|+.++++++....++. +.....+..+.+                                        
T Consensus       100 -i~-~l~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~~l~~----------------------------------------  136 (227)
T d1h6ua2         100 -VS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYL----------------------------------------  136 (227)
T ss_dssp             -CG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEEC----------------------------------------
T ss_pred             -cc-cccccccccccccccccccccch-hccccchhhhhc----------------------------------------
Confidence             44 57788899999998888775433 111111111000                                        


Q ss_pred             hhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhccccccccCCCc
Q psy5270         167 GLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPG  246 (352)
Q Consensus       167 ~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~  246 (352)
                                      +.+.+.... .......++.+++++|.++.++. ++.++.|      +.||+++|++++  +| 
T Consensus       137 ----------------~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L------~~L~Ls~n~l~~--l~-  189 (227)
T d1h6ua2         137 ----------------DLNQITNIS-PLAGLTNLQYLSIGNAQVSDLTP-LANLSKL------TTLKADDNKISD--IS-  189 (227)
T ss_dssp             ----------------CSSCCCCCG-GGGGCTTCCEEECCSSCCCCCGG-GTTCTTC------CEEECCSSCCCC--CG-
T ss_pred             ----------------hhhhhchhh-hhccccccccccccccccccchh-hcccccc------eecccCCCccCC--Ch-
Confidence                            001111111 11233445667777787765443 5566666      799999999985  55 


Q ss_pred             hhhhhHHhHhhhCCCCcceecchhhhcccccccc
Q psy5270         247 NFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIM  280 (352)
Q Consensus       247 ~~~~l~~L~~L~Ls~N~l~~iP~~l~~l~~L~~l  280 (352)
                      .++.+++|++|+|++|+++.+|+ ++++++|+.+
T Consensus       190 ~l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L  222 (227)
T d1h6ua2         190 PLASLPNLIEVHLKNNQISDVSP-LANTSNLFIV  222 (227)
T ss_dssp             GGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEE
T ss_pred             hhcCCCCCCEEECcCCcCCCCcc-cccCCCCCEE
Confidence            48999999999999999998874 8888888876

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=1.5e-18  Score=154.72  Aligned_cols=237  Identities=20%  Similarity=0.250  Sum_probs=162.3

Q ss_pred             CCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEccCCCCCCCCCCCccccCccCcEEEcc
Q psy5270          26 NLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLG  104 (352)
Q Consensus        26 ~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~  104 (352)
                      ..+.+|-+++.++++|..+.  +++++|+|++|+++.+|+ +|.++++|+.|++++|.+.. ..|..|.++++|++|+++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~-i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK-ISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC-BCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccc-cchhhhhCCCccCEeccc
Confidence            57888999999999998775  689999999999999987 59999999999999999987 457889999999999999


Q ss_pred             CCccccchhhccC-cccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcC
Q psy5270         105 DNDFEVLPAEIGN-LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNS  183 (352)
Q Consensus       105 ~N~l~~ip~~~~n-l~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~  183 (352)
                      +|+++.+|..+.. +..|.   ...         ..+..+.. ..+..........                      ..
T Consensus        88 ~n~l~~l~~~~~~~l~~L~---~~~---------n~l~~l~~-~~~~~~~~~~~l~----------------------~~  132 (305)
T d1xkua_          88 KNQLKELPEKMPKTLQELR---VHE---------NEITKVRK-SVFNGLNQMIVVE----------------------LG  132 (305)
T ss_dssp             SSCCSBCCSSCCTTCCEEE---CCS---------SCCCBBCH-HHHTTCTTCCEEE----------------------CC
T ss_pred             CCccCcCccchhhhhhhhh---ccc---------cchhhhhh-hhhhccccccccc----------------------cc
Confidence            9999998875432 22221   111         00000000 0000000000000                      00


Q ss_pred             Cc--eeecccCcc-cccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhccccccccCCCchhhhhHHhHhhhCC
Q psy5270         184 KI--KFTSIFPFM-VDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLG  260 (352)
Q Consensus       184 ~n--~~~g~~P~~-~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls  260 (352)
                      .+  ......+.. .....++.++++.|+++.+|..+  ++++      +.|++++|..++ .+|..|..++.+++|+++
T Consensus       133 ~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~--~~~L------~~L~l~~n~~~~-~~~~~~~~~~~l~~L~~s  203 (305)
T d1xkua_         133 TNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSL------TELHLDGNKITK-VDAASLKGLNNLAKLGLS  203 (305)
T ss_dssp             SSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTC------SEEECTTSCCCE-ECTGGGTTCTTCCEEECC
T ss_pred             cccccccCCCccccccccccCccccccCCccccCccc--CCcc------CEEECCCCcCCC-CChhHhhccccccccccc
Confidence            11  111111111 13345667788899998888653  3455      789999999998 688999999999999999


Q ss_pred             CCcceec-chhhhcccccccccCCc-----eeeeccccccCCcccccccccccCCC
Q psy5270         261 DNDFEVL-PAEIGNLKNLQIMLEPR-----WVISMGSCANGGGYYHYSYSVVRGCD  310 (352)
Q Consensus       261 ~N~l~~i-P~~l~~l~~L~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (352)
                      +|+++.+ |..+.++++|+.|...+     ++.....++... .++++.|.+..++
T Consensus       204 ~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~-~L~Ls~N~i~~i~  258 (305)
T d1xkua_         204 FNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQ-VVYLHNNNISAIG  258 (305)
T ss_dssp             SSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCC-EEECCSSCCCCCC
T ss_pred             cccccccccccccccccceeeecccccccccccccccccCCC-EEECCCCccCccC
Confidence            9999955 66789999999984333     233344455443 5677777766654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=5.4e-19  Score=149.17  Aligned_cols=175  Identities=22%  Similarity=0.350  Sum_probs=121.4

Q ss_pred             EeeCCcCc-ccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCCCCCC
Q psy5270           8 TLSHNKLK-EIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQ   86 (352)
Q Consensus         8 ~Ls~N~l~-~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~g~   86 (352)
                      ++..+.++ .++.  ..+.+|++|++++|.++.++. +..+++|++|++++|+++.+++ ++++++|+.|++++|++++ 
T Consensus        30 ~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l~~-l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~-  104 (210)
T d1h6ta2          30 NLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-  104 (210)
T ss_dssp             HTTCSCTTSEECH--HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-
T ss_pred             HhCcCccCCccCH--HHhcCccEEECcCCCCCCchh-HhhCCCCCEEeCCCccccCccc-cccCccccccccccccccc-
Confidence            34455555 3332  245678899999998887753 7888999999999999988874 6888999999999999875 


Q ss_pred             CCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhh
Q psy5270          87 SLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVR  166 (352)
Q Consensus        87 ~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~  166 (352)
                       +| .++++++|+.|++++|.+..++ .+.++.+++.                                           
T Consensus       105 -l~-~l~~l~~L~~L~l~~~~~~~~~-~l~~l~~l~~-------------------------------------------  138 (210)
T d1h6ta2         105 -LS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLES-------------------------------------------  138 (210)
T ss_dssp             -GG-GGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCE-------------------------------------------
T ss_pred             -cc-cccccccccccccccccccccc-cccccccccc-------------------------------------------
Confidence             55 5888899999999998887654 2333332221                                           


Q ss_pred             hhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhccccccccCCCc
Q psy5270         167 GLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPG  246 (352)
Q Consensus       167 ~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~  246 (352)
                                                          ++++.|.++.++ .+..++.|      +.+++++|++++  ++ 
T Consensus       139 ------------------------------------l~~~~n~l~~~~-~~~~l~~L------~~l~l~~n~l~~--i~-  172 (210)
T d1h6ta2         139 ------------------------------------LYLGNNKITDIT-VLSRLTKL------DTLSLEDNQISD--IV-  172 (210)
T ss_dssp             ------------------------------------EECCSSCCCCCG-GGGGCTTC------SEEECCSSCCCC--CG-
T ss_pred             ------------------------------------cccccccccccc-cccccccc------cccccccccccc--cc-
Confidence                                                122233333222 12233344      678888888875  44 


Q ss_pred             hhhhhHHhHhhhCCCCcceecchhhhcccccccc
Q psy5270         247 NFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIM  280 (352)
Q Consensus       247 ~~~~l~~L~~L~Ls~N~l~~iP~~l~~l~~L~~l  280 (352)
                      .++++++|+.|+|++|+++.|| .++++++|++|
T Consensus       173 ~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L  205 (210)
T d1h6ta2         173 PLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVL  205 (210)
T ss_dssp             GGTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEE
T ss_pred             cccCCCCCCEEECCCCCCCCCh-hhcCCCCCCEE
Confidence            3778888888888888888776 47888888776

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.5e-19  Score=153.46  Aligned_cols=210  Identities=20%  Similarity=0.243  Sum_probs=151.8

Q ss_pred             cEEEeeCCcCcccCccccCCCCCCEEEccCCcCccccc-ccCCCCCCcEEEccCCCCCc-ccc-ccCCCCCCCEEEccC-
Q psy5270           5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPT-SLSSLPKLRILNLGMNRLSS-LPR-GFGAFPVLEVLDLTY-   80 (352)
Q Consensus         5 ~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~-~l~~L~~L~~L~L~~N~l~~-ip~-~~~~l~~L~~L~Ls~-   80 (352)
                      +.++.++..++++|+++.  +++++|++++|+++.+|. .|.++++|++|++++|.+.. +|. .|.+++.++.+++.. 
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            578999999999998875  589999999999998876 68999999999999999984 544 588899999998764 


Q ss_pred             CCCCCCCCCCccccCccCcEEEccCCccccchh--hccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCcccc
Q psy5270          81 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA--EIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPY  158 (352)
Q Consensus        81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~--~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~  158 (352)
                      |++.. ..+..|.++++|+++++++|++..+|.  .+..++.+.....                  .             
T Consensus        89 n~l~~-~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~------------------~-------------  136 (242)
T d1xwdc1          89 NNLLY-INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ------------------D-------------  136 (242)
T ss_dssp             TTCCE-ECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEE------------------S-------------
T ss_pred             ccccc-cccccccccccccccccchhhhcccccccccccccccccccc------------------c-------------
Confidence            67776 567789999999999999999986543  2222222211000                  0             


Q ss_pred             ccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc-c-cCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhcc
Q psy5270         159 CASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV-D-TGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTY  236 (352)
Q Consensus       159 ~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~-~-~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~  236 (352)
                                               ++.+..+.+..+ . ......++++.|+++.++........+.     +.+++++
T Consensus       137 -------------------------n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~-----~~~~l~~  186 (242)
T d1xwdc1         137 -------------------------NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLD-----ELNLSDN  186 (242)
T ss_dssp             -------------------------CTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEE-----EEECTTC
T ss_pred             -------------------------ccccccccccccccccccceeeecccccccccccccccchhhh-----ccccccc
Confidence                                     000111111000 1 1123456778888988887665555553     4567888


Q ss_pred             ccccccCCCc-hhhhhHHhHhhhCCCCcceecchh-hhcccccccc
Q psy5270         237 NNLNEQSLPG-NFFMLETLRALYLGDNDFEVLPAE-IGNLKNLQIM  280 (352)
Q Consensus       237 N~l~g~~iP~-~~~~l~~L~~L~Ls~N~l~~iP~~-l~~l~~L~~l  280 (352)
                      |+++.  +|. .|.++++|++|||++|+++.+|.. +.++++|+++
T Consensus       187 n~l~~--l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l  230 (242)
T d1xwdc1         187 NNLEE--LPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR  230 (242)
T ss_dssp             TTCCC--CCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESS
T ss_pred             ccccc--ccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccC
Confidence            99974  665 578999999999999999988775 7888888775

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=4.4e-18  Score=141.40  Aligned_cols=118  Identities=25%  Similarity=0.341  Sum_probs=100.9

Q ss_pred             ccEEEeeCCcCcccCccccCCCCCCEEEccCCcCc-cc-ccccCCCCCCcEEEccCCCCCccc-cccCCCCCCCEEEccC
Q psy5270           4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIE-TL-PTSLSSLPKLRILNLGMNRLSSLP-RGFGAFPVLEVLDLTY   80 (352)
Q Consensus         4 L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~-~i-p~~l~~L~~L~~L~L~~N~l~~ip-~~~~~l~~L~~L~Ls~   80 (352)
                      .+.+|.++|++++||+++.  +++++|+|++|+++ .+ +..|.++++|+.|++++|++..++ ..|..+++|+.|+|++
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            4679999999999999885  68999999999998 45 457899999999999999999664 5688999999999999


Q ss_pred             CCCCCCCCCCccccCccCcEEEccCCccccchh-hccCcccHHHH
Q psy5270          81 NNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLKNLQII  124 (352)
Q Consensus        81 N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~~L~~L  124 (352)
                      |++++ ..|..|.++++|++|+|++|+|+.+|+ .|.++.+|+++
T Consensus        88 N~l~~-l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l  131 (192)
T d1w8aa_          88 NKIKE-ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL  131 (192)
T ss_dssp             CCCCE-ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred             ccccc-cCHHHHhCCCcccccccCCccccccCHHHhcCCcccccc
Confidence            99997 456689999999999999999998866 46666655543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.73  E-value=4.8e-18  Score=153.53  Aligned_cols=67  Identities=21%  Similarity=0.255  Sum_probs=44.1

Q ss_pred             CCccCcccccccCCCcccCCCCCcccchhhhhhhhhhccccccccCCCchhhhhHHhHhhhCCCCcceecchhhhccccc
Q psy5270         198 GLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL  277 (352)
Q Consensus       198 ~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~~iP~~~~~l~~L~~L~Ls~N~l~~iP~~l~~l~~L  277 (352)
                      +.++.+++++|+++.+|..+.   +|      +.|++++|+++  .+|..   +++|++|++++|+++++|.....+.+|
T Consensus       284 ~~L~~L~Ls~N~l~~lp~~~~---~L------~~L~L~~N~L~--~l~~~---~~~L~~L~L~~N~L~~lp~~~~~L~~L  349 (353)
T d1jl5a_         284 PSLEELNVSNNKLIELPALPP---RL------ERLIASFNHLA--EVPEL---PQNLKQLHVEYNPLREFPDIPESVEDL  349 (353)
T ss_dssp             TTCCEEECCSSCCSCCCCCCT---TC------CEEECCSSCCS--CCCCC---CTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred             CCCCEEECCCCccCccccccC---CC------CEEECCCCcCC--ccccc---cCCCCEEECcCCcCCCCCccccccCee
Confidence            356677778888777775533   33      56777888876  46754   346777788888877777655555554


Q ss_pred             c
Q psy5270         278 Q  278 (352)
Q Consensus       278 ~  278 (352)
                      +
T Consensus       350 ~  350 (353)
T d1jl5a_         350 R  350 (353)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=5.3e-18  Score=142.99  Aligned_cols=164  Identities=24%  Similarity=0.368  Sum_probs=131.8

Q ss_pred             CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCC
Q psy5270           2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYN   81 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N   81 (352)
                      .+|++|++++|.++.++ ++..+++|++|++++|+++.+++ ++.+++|++|++++|+++.+| .+.++++|+.|++++|
T Consensus        46 ~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~~  122 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHN  122 (210)
T ss_dssp             HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTS
T ss_pred             cCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCccc-cccCccccccccccccccccc-cccccccccccccccc
Confidence            46889999999998776 48889999999999999998864 789999999999999999988 4899999999999999


Q ss_pred             CCCCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccc
Q psy5270          82 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCAS  161 (352)
Q Consensus        82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s  161 (352)
                      .+..   ...+..+++++.+++++|.++.++ .+.++++|                                        
T Consensus       123 ~~~~---~~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L----------------------------------------  158 (210)
T d1h6ta2         123 GISD---INGLVHLPQLESLYLGNNKITDIT-VLSRLTKL----------------------------------------  158 (210)
T ss_dssp             CCCC---CGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTC----------------------------------------
T ss_pred             cccc---cccccccccccccccccccccccc-cccccccc----------------------------------------
Confidence            9864   346888999999999999988543 22222222                                        


Q ss_pred             hhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhccccccc
Q psy5270         162 KFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNE  241 (352)
Q Consensus       162 ~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g  241 (352)
                                                             +.+++++|+++.++. ++++++|      +.|++++|+++.
T Consensus       159 ---------------------------------------~~l~l~~n~l~~i~~-l~~l~~L------~~L~Ls~N~i~~  192 (210)
T d1h6ta2         159 ---------------------------------------DTLSLEDNQISDIVP-LAGLTKL------QNLYLSKNHISD  192 (210)
T ss_dssp             ---------------------------------------SEEECCSSCCCCCGG-GTTCTTC------CEEECCSSCCCB
T ss_pred             ---------------------------------------ccccccccccccccc-ccCCCCC------CEEECCCCCCCC
Confidence                                                   233455667766653 5666666      799999999974


Q ss_pred             cCCCchhhhhHHhHhhhCCC
Q psy5270         242 QSLPGNFFMLETLRALYLGD  261 (352)
Q Consensus       242 ~~iP~~~~~l~~L~~L~Ls~  261 (352)
                        +| .+..+++|++|+|++
T Consensus       193 --l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         193 --LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             --CG-GGTTCTTCSEEEEEE
T ss_pred             --Ch-hhcCCCCCCEEEccC
Confidence              66 699999999999863

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.1e-17  Score=134.83  Aligned_cols=120  Identities=24%  Similarity=0.265  Sum_probs=101.0

Q ss_pred             CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccc-cCCCCCCCEEEccC
Q psy5270           2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRG-FGAFPVLEVLDLTY   80 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~Ls~   80 (352)
                      .++++|||++|+|+.||..+..+++|++|+|++|+++.++ .+..+++|+.|++++|+++.+|+. +..+++|+.|++++
T Consensus        18 ~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~   96 (162)
T d1a9na_          18 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN   96 (162)
T ss_dssp             TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred             CcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccccccccceecc
Confidence            4688999999999999877788999999999999999884 589999999999999999999876 46799999999999


Q ss_pred             CCCCCCCCC--CccccCccCcEEEccCCccccchh----hccCcccHHHH
Q psy5270          81 NNLNEQSLP--GNFFMLETLRALYLGDNDFEVLPA----EIGNLKNLQII  124 (352)
Q Consensus        81 N~l~g~~~p--~~~~~l~~L~~L~l~~N~l~~ip~----~~~nl~~L~~L  124 (352)
                      |+++.  ++  ..+..+++|++|++++|.++..|.    .+..+++|++|
T Consensus        97 N~i~~--~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~L  144 (162)
T d1a9na_          97 NSLVE--LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL  144 (162)
T ss_dssp             CCCCC--GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEE
T ss_pred             ccccc--cccccccccccccchhhcCCCccccccchHHHHHHHCCCcCee
Confidence            99975  45  367889999999999999987663    34444444443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3e-17  Score=141.14  Aligned_cols=201  Identities=19%  Similarity=0.240  Sum_probs=140.2

Q ss_pred             CCccEEEeeCCcCcccCc-cccCCCCCCEEEccCCcCc-ccc-cccCCCCCCcEEEcc-CCCCCccc-cccCCCCCCCEE
Q psy5270           2 LYITRITLSHNKLKEIPP-GLANLVNLEILTLFNNQIE-TLP-TSLSSLPKLRILNLG-MNRLSSLP-RGFGAFPVLEVL   76 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~-~l~~l~~L~~L~L~~N~l~-~ip-~~l~~L~~L~~L~L~-~N~l~~ip-~~~~~l~~L~~L   76 (352)
                      +++++||+++|+++.+|+ .|.++++|++|++++|.+. .+| ..|..+++++.+++. .|++..++ ..|.++++|+.+
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            478999999999999987 5899999999999999987 454 468899999999876 46787554 558999999999


Q ss_pred             EccCCCCCCCCCCCccccCccCcEEEccCCccccchh-hccCcc-cHHHHHHhcchhhHhhcCceEeeccccccccCCCC
Q psy5270          77 DLTYNNLNEQSLPGNFFMLETLRALYLGDNDFEVLPA-EIGNLK-NLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPN  154 (352)
Q Consensus        77 ~Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~-~~~nl~-~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~  154 (352)
                      ++++|++........+..+..+..+..+++++..++. .+.++. .++.+                              
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L------------------------------  158 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL------------------------------  158 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEE------------------------------
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccccccccccceee------------------------------
Confidence            9999999752222234456677777778888887654 333321 11110                              


Q ss_pred             ccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC-ccCcccccccCCCcccC-CCCCcccchhhhhhhh
Q psy5270         155 LVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL-CKNPKIKMNRLSSLPRG-FGAFPVLEAFSFTTIL  232 (352)
Q Consensus       155 l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~-l~~l~l~~n~l~~ip~~-~~~l~~L~~~~~L~~L  232 (352)
                                                .+++++++.+.+....... .+..++++|+++++|.. +..+++|      +.|
T Consensus       159 --------------------------~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L------~~L  206 (242)
T d1xwdc1         159 --------------------------WLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGP------VIL  206 (242)
T ss_dssp             --------------------------ECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCC------SEE
T ss_pred             --------------------------ecccccccccccccccchhhhccccccccccccccHHHhcCCCCC------CEE
Confidence                                      1122333333333222222 23345688899999875 5667777      799


Q ss_pred             hhccccccccCCCc-hhhhhHHhHhhhCCCCcceecc
Q psy5270         233 DLTYNNLNEQSLPG-NFFMLETLRALYLGDNDFEVLP  268 (352)
Q Consensus       233 ~ls~N~l~g~~iP~-~~~~l~~L~~L~Ls~N~l~~iP  268 (352)
                      |+++|+++.  +|. .|.++++|+++++.  ++..+|
T Consensus       207 ~Ls~N~l~~--l~~~~~~~l~~L~~l~~~--~l~~lp  239 (242)
T d1xwdc1         207 DISRTRIHS--LPSYGLENLKKLRARSTY--NLKKLP  239 (242)
T ss_dssp             ECTTSCCCC--CCSSSCTTCCEEESSSEE--SSSCSC
T ss_pred             ECCCCcCCc--cCHHHHcCCcccccCcCC--CCCcCC
Confidence            999999985  554 58888888887764  344555

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=2.9e-16  Score=130.23  Aligned_cols=108  Identities=28%  Similarity=0.414  Sum_probs=96.3

Q ss_pred             CCccEEEeeCCcCc-ccC-ccccCCCCCCEEEccCCcCccc-ccccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEE
Q psy5270           2 LYITRITLSHNKLK-EIP-PGLANLVNLEILTLFNNQIETL-PTSLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLD   77 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~-~ip-~~l~~l~~L~~L~L~~N~l~~i-p~~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~   77 (352)
                      +++++|+|++|+|+ .++ ..|+++++|++|+|++|.+..+ +..+..+++|+.|+|++|+++.+|+ .|.++++|++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            47899999999998 454 4578999999999999999955 6688999999999999999998876 489999999999


Q ss_pred             ccCCCCCCCCCCCccccCccCcEEEccCCcccc
Q psy5270          78 LTYNNLNEQSLPGNFFMLETLRALYLGDNDFEV  110 (352)
Q Consensus        78 Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~~  110 (352)
                      |++|+|++ ..|..|..+++|++|+|++|.+..
T Consensus       109 L~~N~l~~-i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_         109 LYDNQISC-VMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCSSCCCE-ECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cCCccccc-cCHHHhcCCccccccccccccccc
Confidence            99999997 456789999999999999999984

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=5.3e-16  Score=132.05  Aligned_cols=186  Identities=23%  Similarity=0.308  Sum_probs=143.5

Q ss_pred             CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCC
Q psy5270           2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYN   81 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N   81 (352)
                      ++|+.|++++|.++.++ ++.++++|++|++++|+++.+++ +..+++|+.+++++|.++.++ .++.+++|+.+++++|
T Consensus        41 ~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~~~  117 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST  117 (227)
T ss_dssp             HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS
T ss_pred             CCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeecccc-ccccccccccccccccccccc-cccccccccccccccc
Confidence            57899999999999984 69999999999999999997754 899999999999999999886 4789999999999999


Q ss_pred             CCCCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccc
Q psy5270          82 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCAS  161 (352)
Q Consensus        82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s  161 (352)
                      ...+   ...+...+.++.+.++.+.+...+. +.++++|+.+.++                                  
T Consensus       118 ~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~L~~L~l~----------------------------------  159 (227)
T d1h6ua2         118 QITD---VTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIG----------------------------------  159 (227)
T ss_dssp             CCCC---CGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECC----------------------------------
T ss_pred             cccc---cchhccccchhhhhchhhhhchhhh-hcccccccccccc----------------------------------
Confidence            9875   3346678899999999999875432 3444444433221                                  


Q ss_pred             hhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccccCCCcccCCCCCcccchhhhhhhhhhccccccc
Q psy5270         162 KFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMNRLSSLPRGFGAFPVLEAFSFTTILDLTYNNLNE  241 (352)
Q Consensus       162 ~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n~l~~ip~~~~~l~~L~~~~~L~~L~ls~N~l~g  241 (352)
                                            ++.+.+. +.....+.++.+++++|+++++|. ++.+++|      +.|++++|++++
T Consensus       160 ----------------------~n~~~~~-~~l~~l~~L~~L~Ls~n~l~~l~~-l~~l~~L------~~L~Ls~N~lt~  209 (227)
T d1h6ua2         160 ----------------------NAQVSDL-TPLANLSKLTTLKADDNKISDISP-LASLPNL------IEVHLKNNQISD  209 (227)
T ss_dssp             ----------------------SSCCCCC-GGGTTCTTCCEEECCSSCCCCCGG-GGGCTTC------CEEECTTSCCCB
T ss_pred             ----------------------ccccccc-hhhcccccceecccCCCccCCChh-hcCCCCC------CEEECcCCcCCC
Confidence                                  1111111 112234567888999999988764 5556666      799999999985


Q ss_pred             cCCCchhhhhHHhHhhhCCC
Q psy5270         242 QSLPGNFFMLETLRALYLGD  261 (352)
Q Consensus       242 ~~iP~~~~~l~~L~~L~Ls~  261 (352)
                        +| .+.++++|++|++++
T Consensus       210 --i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         210 --VS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             --CG-GGTTCTTCCEEEEEE
T ss_pred             --Cc-ccccCCCCCEEEeeC
Confidence              55 488999999999863

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=1.1e-15  Score=127.30  Aligned_cols=119  Identities=23%  Similarity=0.296  Sum_probs=84.3

Q ss_pred             CCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCC
Q psy5270           2 LYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYN   81 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N   81 (352)
                      .++++|++++|.++.++ ++..+++|++|++++|+++.+++ ++++++|++|++++|.+..+|. ++++++|+.|++++|
T Consensus        40 ~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~l~~~  116 (199)
T d2omxa2          40 DQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN  116 (199)
T ss_dssp             TTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEECCSS
T ss_pred             cCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc-ccCCcccccccccccccccccc-ccccccccccccccc
Confidence            46777888888877764 46777888888888888876654 7778888888888887777664 677777777777777


Q ss_pred             CCCCCCCCCccccCccCcEEEccCCccccchhhccCcccHHHHHHh
Q psy5270          82 NLNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQIILET  127 (352)
Q Consensus        82 ~l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~L~l~  127 (352)
                      .+..   ...+..+++|++|++++|++..+| .+..+++++.+++.
T Consensus       117 ~~~~---~~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~  158 (199)
T d2omxa2         117 QITD---IDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFS  158 (199)
T ss_dssp             CCCC---CGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECC
T ss_pred             cccc---ccccchhhhhHHhhhhhhhhcccc-cccccccccccccc
Confidence            7654   234666777777777777777654 35556666555443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=4.8e-16  Score=119.31  Aligned_cols=97  Identities=26%  Similarity=0.325  Sum_probs=86.3

Q ss_pred             CEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCCCCCCCCCCccccCccCcEEEccCCc
Q psy5270          28 EILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLRALYLGDND  107 (352)
Q Consensus        28 ~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~~L~l~~N~  107 (352)
                      |+|||++|+++.++. ++.+++|++|++++|+++++|+.++.+++|++|++++|.+++  +| .++++++|++|++++|+
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~--l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccc--cC-ccccccccCeEECCCCc
Confidence            689999999998874 899999999999999999999999999999999999999986  55 59999999999999999


Q ss_pred             cccch--hhccCcccHHHHHHhc
Q psy5270         108 FEVLP--AEIGNLKNLQIILETF  128 (352)
Q Consensus       108 l~~ip--~~~~nl~~L~~L~l~~  128 (352)
                      ++.+|  ..++++++|+.+++++
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~   99 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQG   99 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTT
T ss_pred             cCCCCCchhhcCCCCCCEEECCC
Confidence            99766  3677777777766654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.52  E-value=4.9e-15  Score=133.37  Aligned_cols=107  Identities=25%  Similarity=0.313  Sum_probs=89.1

Q ss_pred             CccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCC
Q psy5270           3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNN   82 (352)
Q Consensus         3 ~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~   82 (352)
                      ++++|||++|.++++|+.   +++|++|+|++|+++++|+.+   .+|+.|++++|+++.++.-   .++|++|++++|.
T Consensus        39 ~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n~  109 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ  109 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC
T ss_pred             CCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhhh---ccccccccccccc
Confidence            688999999999999975   467999999999999999765   4789999999999987642   1469999999999


Q ss_pred             CCCCCCCCccccCccCcEEEccCCccccchhhccCcccH
Q psy5270          83 LNEQSLPGNFFMLETLRALYLGDNDFEVLPAEIGNLKNL  121 (352)
Q Consensus        83 l~g~~~p~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L  121 (352)
                      ++.  +|. ++++++|++|++++|.++..|.....+..+
T Consensus       110 l~~--lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l  145 (353)
T d1jl5a_         110 LEK--LPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFI  145 (353)
T ss_dssp             CSS--CCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEE
T ss_pred             ccc--ccc-hhhhccceeeccccccccccccccccccch
Confidence            975  775 688999999999999998776655544433

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4.2e-15  Score=119.53  Aligned_cols=106  Identities=21%  Similarity=0.227  Sum_probs=91.2

Q ss_pred             cccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCCCCCCCCCCc-cccCccC
Q psy5270          20 GLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGN-FFMLETL   98 (352)
Q Consensus        20 ~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~g~~~p~~-~~~l~~L   98 (352)
                      .+.++.++++|+|++|+++.||..+..+++|++|++++|++++++ .|..+++|+.|++++|+++.  +|.. +..+++|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~--l~~~~~~~l~~L   89 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICR--IGEGLDQALPDL   89 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCE--ECSCHHHHCTTC
T ss_pred             hccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccC--CCcccccccccc
Confidence            366888999999999999999887788999999999999999985 58999999999999999986  5554 5679999


Q ss_pred             cEEEccCCccccchh--hccCcccHHHHHHhc
Q psy5270          99 RALYLGDNDFEVLPA--EIGNLKNLQIILETF  128 (352)
Q Consensus        99 ~~L~l~~N~l~~ip~--~~~nl~~L~~L~l~~  128 (352)
                      ++|++++|+++.++.  .+..+++|+.++++.
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~  121 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILR  121 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCS
T ss_pred             ccceeccccccccccccccccccccchhhcCC
Confidence            999999999997764  577777777666554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=8.9e-14  Score=110.86  Aligned_cols=105  Identities=23%  Similarity=0.246  Sum_probs=92.5

Q ss_pred             CccEEEeeCCcCcccCccccCCCCCCEEEccCC-cCcccc-cccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEcc
Q psy5270           3 YITRITLSHNKLKEIPPGLANLVNLEILTLFNN-QIETLP-TSLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDLT   79 (352)
Q Consensus         3 ~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N-~l~~ip-~~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls   79 (352)
                      ..+.++.+++++.++|..+..+++|++|++++| .++.++ ..|.++++|+.|++++|+++.|++ .|..+++|++|+|+
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            356789999999999999999999999999876 588885 479999999999999999999855 58999999999999


Q ss_pred             CCCCCCCCCCCccccCccCcEEEccCCccc
Q psy5270          80 YNNLNEQSLPGNFFMLETLRALYLGDNDFE  109 (352)
Q Consensus        80 ~N~l~g~~~p~~~~~l~~L~~L~l~~N~l~  109 (352)
                      +|+++.  +|.......+|+.|+|++|.+.
T Consensus        89 ~N~l~~--l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          89 FNALES--LSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SSCCSC--CCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCCCcc--cChhhhccccccccccCCCccc
Confidence            999985  7776666668999999999986

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.49  E-value=1.3e-16  Score=132.83  Aligned_cols=109  Identities=29%  Similarity=0.391  Sum_probs=57.7

Q ss_pred             ccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccCCCCCCCCCCCccccC
Q psy5270          16 EIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTYNNLNEQSLPGNFFML   95 (352)
Q Consensus        16 ~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l   95 (352)
                      ++|.++..+++|++|+|++|+++.++ .+..+++|+.|++++|+++.+|..+..+++|+.|++++|+++.  ++ .+..+
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~--l~-~~~~l  114 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS--LS-GIEKL  114 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCC--HH-HHHHH
T ss_pred             hhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccccccccc--cc-ccccc
Confidence            44455555555555555555555553 3555555555555555555555444444455555555555543  22 35555


Q ss_pred             ccCcEEEccCCccccch--hhccCcccHHHHHHhc
Q psy5270          96 ETLRALYLGDNDFEVLP--AEIGNLKNLQIILETF  128 (352)
Q Consensus        96 ~~L~~L~l~~N~l~~ip--~~~~nl~~L~~L~l~~  128 (352)
                      ++|++|++++|+++.++  ..++++++|+.++++.
T Consensus       115 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~  149 (198)
T d1m9la_         115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG  149 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECS
T ss_pred             ccccccccccchhccccccccccCCCccceeecCC
Confidence            55555555555555443  2445555555554443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.36  E-value=1.1e-15  Score=127.12  Aligned_cols=119  Identities=24%  Similarity=0.308  Sum_probs=95.7

Q ss_pred             CCCccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccccccCCCCCCCEEEccC
Q psy5270           1 MLYITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLPRGFGAFPVLEVLDLTY   80 (352)
Q Consensus         1 l~~L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~   80 (352)
                      |++|++|+|++|+|+.++ .+.++++|++|+|++|+++.+|.....+++|+.|++++|+++.++ .+.++++|+.|++++
T Consensus        47 L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~L~~  124 (198)
T d1m9la_          47 LKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSN  124 (198)
T ss_dssp             TTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSSEEEESE
T ss_pred             ccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccccccccccc-ccccccccccccccc
Confidence            568899999999999886 588899999999999999988876666778999999999999875 377888999999999


Q ss_pred             CCCCCCCCC--CccccCccCcEEEccCCccccchhhccCcccHHH
Q psy5270          81 NNLNEQSLP--GNFFMLETLRALYLGDNDFEVLPAEIGNLKNLQI  123 (352)
Q Consensus        81 N~l~g~~~p--~~~~~l~~L~~L~l~~N~l~~ip~~~~nl~~L~~  123 (352)
                      |+++.  ++  ..+..+++|++|++++|++...+.........+.
T Consensus       125 N~i~~--~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~  167 (198)
T d1m9la_         125 NKITN--WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRI  167 (198)
T ss_dssp             EECCC--HHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHH
T ss_pred             chhcc--ccccccccCCCccceeecCCCccccCcccccchhhHHH
Confidence            99975  44  3678889999999999998865554444333333

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.9e-14  Score=126.58  Aligned_cols=215  Identities=19%  Similarity=0.095  Sum_probs=129.7

Q ss_pred             cEEEeeCCcCcccCccccCCCCCCEEEccCCcCc--ccccccCCCCCCcEEEccCCCCC-ccccccCCCCCCCEEEccCC
Q psy5270           5 TRITLSHNKLKEIPPGLANLVNLEILTLFNNQIE--TLPTSLSSLPKLRILNLGMNRLS-SLPRGFGAFPVLEVLDLTYN   81 (352)
Q Consensus         5 ~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~--~ip~~l~~L~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~Ls~N   81 (352)
                      ..+.++...............+|++||++++.++  .++..+..+++|++|+++++.++ ..+..++.+++|+.|+++++
T Consensus        26 ~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c  105 (284)
T d2astb2          26 IAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC  105 (284)
T ss_dssp             SEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred             eEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccc
Confidence            3455555544433334455678999999999887  45667889999999999999998 67778899999999999995


Q ss_pred             -CCCCCCCCCccccCccCcEEEccCC-ccc--cchhhccCc-ccHHHHHHhcchhhHhhcCceEeeccccccccCCCCcc
Q psy5270          82 -NLNEQSLPGNFFMLETLRALYLGDN-DFE--VLPAEIGNL-KNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLV  156 (352)
Q Consensus        82 -~l~g~~~p~~~~~l~~L~~L~l~~N-~l~--~ip~~~~nl-~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~  156 (352)
                       .++...+..-..++++|++|+++++ .++  .+...+... ++|+.+.++.                       ..   
T Consensus       106 ~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~-----------------------~~---  159 (284)
T d2astb2         106 SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG-----------------------YR---  159 (284)
T ss_dssp             BSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS-----------------------CG---
T ss_pred             ccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcc-----------------------cc---
Confidence             5653223333457899999999986 455  333333221 2222211110                       00   


Q ss_pred             ccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccc-cCC-CcccCCCCCcccchhhhhhhhhh
Q psy5270         157 PYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMN-RLS-SLPRGFGAFPVLEAFSFTTILDL  234 (352)
Q Consensus       157 ~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n-~l~-~ip~~~~~l~~L~~~~~L~~L~l  234 (352)
                       .......+..+        .                 ...+.++.++++++ .++ .....++.++.|      ++|++
T Consensus       160 -~~i~~~~l~~l--------~-----------------~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L------~~L~L  207 (284)
T d2astb2         160 -KNLQKSDLSTL--------V-----------------RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL------QHLSL  207 (284)
T ss_dssp             -GGSCHHHHHHH--------H-----------------HHCTTCSEEECTTCTTCCGGGGGGGGGCTTC------CEEEC
T ss_pred             -ccccccccccc--------c-----------------cccccccccccccccCCCchhhhhhcccCcC------CEEEC
Confidence             00000011000        0                 01234556666654 354 344444555555      68888


Q ss_pred             ccc-cccccCCCchhhhhHHhHhhhCCCCcce--ecchhhhccccccc
Q psy5270         235 TYN-NLNEQSLPGNFFMLETLRALYLGDNDFE--VLPAEIGNLKNLQI  279 (352)
Q Consensus       235 s~N-~l~g~~iP~~~~~l~~L~~L~Ls~N~l~--~iP~~l~~l~~L~~  279 (352)
                      +++ .+++ .....++++++|+.|+++++ ++  .++.-...+++|++
T Consensus       208 ~~C~~i~~-~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~i  253 (284)
T d2astb2         208 SRCYDIIP-ETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQI  253 (284)
T ss_dssp             TTCTTCCG-GGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEE
T ss_pred             CCCCCCCh-HHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCccccc
Confidence            884 5665 45566777888888888877 43  44444455666654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.5e-12  Score=103.56  Aligned_cols=105  Identities=18%  Similarity=0.098  Sum_probs=87.3

Q ss_pred             cCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCC-CCCcccc-ccCCCCCCCEEEccCCCCCCCCCCCccccCccCc
Q psy5270          22 ANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMN-RLSSLPR-GFGAFPVLEVLDLTYNNLNEQSLPGNFFMLETLR   99 (352)
Q Consensus        22 ~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N-~l~~ip~-~~~~l~~L~~L~Ls~N~l~g~~~p~~~~~l~~L~   99 (352)
                      ..+...+.++.+++.+.++|..+..+++|+.|++++| .++.|+. .|.++++|+.|++++|+|++ .-|..|..+++|+
T Consensus         5 C~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-i~~~~f~~l~~L~   83 (156)
T d2ifga3           5 CCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLS   83 (156)
T ss_dssp             SCCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCC
T ss_pred             CCcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCC-ccccccccccccc
Confidence            3445677899999999999999999999999999876 5998875 59999999999999999997 4477899999999


Q ss_pred             EEEccCCccccchhhccCcccHHHHHHh
Q psy5270         100 ALYLGDNDFEVLPAEIGNLKNLQIILET  127 (352)
Q Consensus       100 ~L~l~~N~l~~ip~~~~nl~~L~~L~l~  127 (352)
                      +|+|++|+|+.+|........++.++++
T Consensus        84 ~L~Ls~N~l~~l~~~~~~~~~l~~L~L~  111 (156)
T d2ifga3          84 RLNLSFNALESLSWKTVQGLSLQELVLS  111 (156)
T ss_dssp             EEECCSSCCSCCCSTTTCSCCCCEEECC
T ss_pred             ceeccCCCCcccChhhhccccccccccC
Confidence            9999999999998865444445544433

>d2fug61 e.19.1.2 (6:15-175) NAD-quinone oxidoreductase chain 6, Nqo6 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: HydA/Nqo6-like
superfamily: HydA/Nqo6-like
family: Nq06-like
domain: NAD-quinone oxidoreductase chain 6, Nqo6
species: Thermus thermophilus [TaxId: 274]

Probab=99.26  E-value=1.5e-12  Score=100.42  Aligned_cols=67  Identities=52%  Similarity=1.145  Sum_probs=62.0

Q ss_pred             ccccCCceeeeccccccCCcccccccccccCCCcccccceecCCCCCCHHHHHHHHHHHHHHHHhhhh
Q psy5270         278 QIMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKI  345 (352)
Q Consensus       278 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gcpp~~~~~~~~~~~~~~~~~~~~~  345 (352)
                      +.+.++++.+..|.|+..+|+|+ +|+...|++.++|+|+++|||||+|+++++|++++++|++++..
T Consensus        83 ~qmPePK~VIA~GaCa~sGG~f~-~y~v~~gvd~~iPVDvyIPGCPPrPeail~gl~~l~~ki~~~~~  149 (161)
T d2fug61          83 EQMPDPKWVISMGACASSGGMFN-NYAIVQNVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVRGQAY  149 (161)
T ss_dssp             HTSCSSCCEEEEHHHHHSCTTCC-STTBCSCGGGTSCCSEEECCSSCCHHHHHHHHHHHHHHHHSSCC
T ss_pred             HhCCCCceEEEecccccCCCccC-CccccCCcCccCcCceeCCCCCcCHHHHHHHHHHHHHHHhhhcc
Confidence            66789999999999999999884 89999999999999999999999999999999999999977543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=4.8e-13  Score=117.38  Aligned_cols=216  Identities=15%  Similarity=0.135  Sum_probs=136.9

Q ss_pred             cEEEeeCCcCc-ccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCC--ccccccCCCCCCCEEEccCC
Q psy5270           5 TRITLSHNKLK-EIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLS--SLPRGFGAFPVLEVLDLTYN   81 (352)
Q Consensus         5 ~~L~Ls~N~l~-~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~--~ip~~~~~l~~L~~L~Ls~N   81 (352)
                      +++|++++.+. .+...+.. .....+.++...............+|++||++++.++  .++.-+..+++|+.|++++|
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~   81 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL   81 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccccc
Confidence            57899998886 43333221 2456777776665543344556678999999999987  45666889999999999999


Q ss_pred             CCCCCCCCCccccCccCcEEEccCC-ccc--cchhhccCcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCcccc
Q psy5270          82 NLNEQSLPGNFFMLETLRALYLGDN-DFE--VLPAEIGNLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPY  158 (352)
Q Consensus        82 ~l~g~~~p~~~~~l~~L~~L~l~~N-~l~--~ip~~~~nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~  158 (352)
                      .+++ ..+..++.+++|++|+++++ .++  .+..-..++++|+.+++++..                            
T Consensus        82 ~l~~-~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~----------------------------  132 (284)
T d2astb2          82 RLSD-PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF----------------------------  132 (284)
T ss_dssp             BCCH-HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT----------------------------
T ss_pred             CCCc-HHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccccccccc----------------------------
Confidence            9987 67888999999999999995 566  333323334444433322100                            


Q ss_pred             ccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCccCcccccc--cCC--CcccCCCCCcccchhhhhhhhhh
Q psy5270         159 CASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLCKNPKIKMN--RLS--SLPRGFGAFPVLEAFSFTTILDL  234 (352)
Q Consensus       159 ~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l~~l~l~~n--~l~--~ip~~~~~l~~L~~~~~L~~L~l  234 (352)
                      ..+...+..       ....                 ....++.++++..  .++  .+..-...+      +.|+.||+
T Consensus       133 ~~~~~~~~~-------~~~~-----------------~~~~L~~L~l~~~~~~i~~~~l~~l~~~~------~~L~~L~L  182 (284)
T d2astb2         133 DFTEKHVQV-------AVAH-----------------VSETITQLNLSGYRKNLQKSDLSTLVRRC------PNLVHLDL  182 (284)
T ss_dssp             TCCHHHHHH-------HHHH-----------------SCTTCCEEECCSCGGGSCHHHHHHHHHHC------TTCSEEEC
T ss_pred             ccccccchh-------hhcc-----------------cccccchhhhccccccccccccccccccc------cccccccc
Confidence            000000000       0000                 0122344444421  222  121111223      34479999


Q ss_pred             ccc-cccccCCCchhhhhHHhHhhhCCCC-cce-ecchhhhccccccccc
Q psy5270         235 TYN-NLNEQSLPGNFFMLETLRALYLGDN-DFE-VLPAEIGNLKNLQIML  281 (352)
Q Consensus       235 s~N-~l~g~~iP~~~~~l~~L~~L~Ls~N-~l~-~iP~~l~~l~~L~~l~  281 (352)
                      ++| .+++ ..+..++.+++|++|+|+++ .++ .....++++++|+.+.
T Consensus       183 ~~~~~itd-~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~  231 (284)
T d2astb2         183 SDSVMLKN-DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ  231 (284)
T ss_dssp             TTCTTCCG-GGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred             ccccCCCc-hhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEe
Confidence            986 5776 67788999999999999995 687 6777789999999874

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.94  E-value=9.2e-12  Score=111.94  Aligned_cols=94  Identities=20%  Similarity=0.216  Sum_probs=69.3

Q ss_pred             ccCccccCCCCCCEEEccCCcCc-----ccccccCCCCCCcEEEccCCCCCcc----c-------cccCCCCCCCEEEcc
Q psy5270          16 EIPPGLANLVNLEILTLFNNQIE-----TLPTSLSSLPKLRILNLGMNRLSSL----P-------RGFGAFPVLEVLDLT   79 (352)
Q Consensus        16 ~ip~~l~~l~~L~~L~L~~N~l~-----~ip~~l~~L~~L~~L~L~~N~l~~i----p-------~~~~~l~~L~~L~Ls   79 (352)
                      .+...+.+.+.+++|+|++|.++     .+-..+...++|+.++++++....+    |       ..+...++|+.|+++
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            35556777888999999999886     2345677888999999988866522    2       235677889999999


Q ss_pred             CCCCCCCC---CCCccccCccCcEEEccCCccc
Q psy5270          80 YNNLNEQS---LPGNFFMLETLRALYLGDNDFE  109 (352)
Q Consensus        80 ~N~l~g~~---~p~~~~~l~~L~~L~l~~N~l~  109 (352)
                      +|.++...   +...+...++|++|++++|.++
T Consensus       102 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~  134 (344)
T d2ca6a1         102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  134 (344)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             ccccccccccchhhhhcccccchheeccccccc
Confidence            99886511   2333456788999999999886

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.73  E-value=3.7e-10  Score=101.17  Aligned_cols=61  Identities=25%  Similarity=0.250  Sum_probs=37.6

Q ss_pred             CccCcccccccCCC------cccCCCCCcccchhhhhhhhhhcccccccc---CCCchhhhhHHhHhhhCCCCcce
Q psy5270         199 LCKNPKIKMNRLSS------LPRGFGAFPVLEAFSFTTILDLTYNNLNEQ---SLPGNFFMLETLRALYLGDNDFE  265 (352)
Q Consensus       199 ~l~~l~l~~n~l~~------ip~~~~~l~~L~~~~~L~~L~ls~N~l~g~---~iP~~~~~l~~L~~L~Ls~N~l~  265 (352)
                      .++.++++.|+++.      +...+...+.      ++.|++++|.++..   .+...+..+++|++|+|++|.++
T Consensus       187 ~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~------L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQE------LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHHTTGGGCTT------CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             hhcccccccccccccccccchhhhhcchhh------hcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            34556677777652      1222233333      46788888887531   13445567777888888888887

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.5e-09  Score=100.02  Aligned_cols=108  Identities=24%  Similarity=0.278  Sum_probs=86.4

Q ss_pred             CCccEEEeeCCcCc--ccCccccCCCCCCEEEccCCcCc-----ccccccCCCCCCcEEEccCCCCCc-----cccccC-
Q psy5270           2 LYITRITLSHNKLK--EIPPGLANLVNLEILTLFNNQIE-----TLPTSLSSLPKLRILNLGMNRLSS-----LPRGFG-   68 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~--~ip~~l~~l~~L~~L~L~~N~l~-----~ip~~l~~L~~L~~L~L~~N~l~~-----ip~~~~-   68 (352)
                      .+|++||+++|+++  .+.+-+..++++++|+|++|.++     .+...+..+++|+.|||++|+++.     +...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            46899999999998  44555677889999999999987     345667899999999999999972     333333 


Q ss_pred             CCCCCCEEEccCCCCCCC---CCCCccccCccCcEEEccCCccc
Q psy5270          69 AFPVLEVLDLTYNNLNEQ---SLPGNFFMLETLRALYLGDNDFE  109 (352)
Q Consensus        69 ~l~~L~~L~Ls~N~l~g~---~~p~~~~~l~~L~~L~l~~N~l~  109 (352)
                      ...+|+.|+|++|+++..   .++..+..+++|++|++++|.++
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            235799999999999752   13556778899999999999987

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=9.5e-10  Score=87.52  Aligned_cols=102  Identities=25%  Similarity=0.228  Sum_probs=67.8

Q ss_pred             ccEEEeeCCcCcccCccccCCCCCCEEEccCCcCcccccccCCCCCCcEEEccCCCCCccc---cccCCCCCCCEEEccC
Q psy5270           4 ITRITLSHNKLKEIPPGLANLVNLEILTLFNNQIETLPTSLSSLPKLRILNLGMNRLSSLP---RGFGAFPVLEVLDLTY   80 (352)
Q Consensus         4 L~~L~Ls~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ip~~l~~L~~L~~L~L~~N~l~~ip---~~~~~l~~L~~L~Ls~   80 (352)
                      .+.||++++...   +.+..+..+..+...++....++.....+++|++|+|++|+++.++   ..+..+++|+.|+|++
T Consensus        24 ~~~Ldls~l~~~---~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~  100 (162)
T d1koha1          24 QQALDLKGLRSD---PDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG  100 (162)
T ss_dssp             SCCBCCCCCSSC---TTTTTTTCCCCTTSHHHHHHHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTT
T ss_pred             hCeeecccCCCC---chhhhccchhhcchhhhHhhhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCccccccccc
Confidence            344566544321   2344444455555555544455555567888999999999998654   4467789999999999


Q ss_pred             CCCCCCCCCC-ccccCccCcEEEccCCcccc
Q psy5270          81 NNLNEQSLPG-NFFMLETLRALYLGDNDFEV  110 (352)
Q Consensus        81 N~l~g~~~p~-~~~~l~~L~~L~l~~N~l~~  110 (352)
                      |.++.  +++ .+....+|++|++++|.++.
T Consensus       101 N~i~~--l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1         101 NELKS--ERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             SCCCC--GGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             Ccccc--chhhhhhhccccceeecCCCCcCc
Confidence            99875  444 33344578999999998873

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=4.4e-08  Score=77.60  Aligned_cols=85  Identities=28%  Similarity=0.198  Sum_probs=65.3

Q ss_pred             cCccccCCCCCCEEEccCCcCccc---ccccCCCCCCcEEEccCCCCCcccc-ccCCCCCCCEEEccCCCCCCCCCCCc-
Q psy5270          17 IPPGLANLVNLEILTLFNNQIETL---PTSLSSLPKLRILNLGMNRLSSLPR-GFGAFPVLEVLDLTYNNLNEQSLPGN-   91 (352)
Q Consensus        17 ip~~l~~l~~L~~L~L~~N~l~~i---p~~l~~L~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls~N~l~g~~~p~~-   91 (352)
                      ++....++++|++|+|++|+++.+   +..+..+++|+.|+|++|+++.+++ .+.....|+.|++++|.+.. ..... 
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~-~~~~~~  135 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD-TFRDQS  135 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS-SSSSHH
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc-Ccccch
Confidence            333345788999999999999865   3456789999999999999998876 23344579999999999986 33332 


Q ss_pred             ------cccCccCcEEE
Q psy5270          92 ------FFMLETLRALY  102 (352)
Q Consensus        92 ------~~~l~~L~~L~  102 (352)
                            +..+++|+.||
T Consensus       136 ~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         136 TYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHTTSTTCCEET
T ss_pred             hHHHHHHHHCCCCCEEC
Confidence                  55688899886

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.8e-07  Score=85.57  Aligned_cols=108  Identities=27%  Similarity=0.306  Sum_probs=74.4

Q ss_pred             CCccEEEeeCCcCc-c----cCccc-cCCCCCCEEEccCCcCcc-----cccccCCCCCCcEEEccCCCCC-----cccc
Q psy5270           2 LYITRITLSHNKLK-E----IPPGL-ANLVNLEILTLFNNQIET-----LPTSLSSLPKLRILNLGMNRLS-----SLPR   65 (352)
Q Consensus         2 ~~L~~L~Ls~N~l~-~----ip~~l-~~l~~L~~L~L~~N~l~~-----ip~~l~~L~~L~~L~L~~N~l~-----~ip~   65 (352)
                      +.++.+++++|.++ .    +...+ ...+.|+.+++++|.++.     +...+...++|++|+|++|+++     .+++
T Consensus       283 ~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~  362 (460)
T d1z7xw1         283 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ  362 (460)
T ss_dssp             TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH
T ss_pred             ccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhh
Confidence            46788888888886 2    11222 234578889998888762     2223455667889999988886     2444


Q ss_pred             ccC-CCCCCCEEEccCCCCCCC---CCCCccccCccCcEEEccCCccc
Q psy5270          66 GFG-AFPVLEVLDLTYNNLNEQ---SLPGNFFMLETLRALYLGDNDFE  109 (352)
Q Consensus        66 ~~~-~l~~L~~L~Ls~N~l~g~---~~p~~~~~l~~L~~L~l~~N~l~  109 (352)
                      .+. ..+.|++|+|++|+++..   .+++.+..+++|++|++++|+++
T Consensus       363 ~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             hhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence            444 456788999999988641   24445666788899999999887

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.93  E-value=2.8e-06  Score=67.16  Aligned_cols=106  Identities=17%  Similarity=0.170  Sum_probs=66.4

Q ss_pred             CCccEEEeeCC-cCc-c----cCccccCCCCCCEEEccCCcCc-c----cccccCCCCCCcEEEccCCCCCc-----ccc
Q psy5270           2 LYITRITLSHN-KLK-E----IPPGLANLVNLEILTLFNNQIE-T----LPTSLSSLPKLRILNLGMNRLSS-----LPR   65 (352)
Q Consensus         2 ~~L~~L~Ls~N-~l~-~----ip~~l~~l~~L~~L~L~~N~l~-~----ip~~l~~L~~L~~L~L~~N~l~~-----ip~   65 (352)
                      ++|++|+|+++ .++ +    +-..+...++|++|+|++|.+. .    +-..+...+.|+.|++++|.++.     +-.
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            56788888763 465 2    2234666677888888888776 1    22345556778888888888772     233


Q ss_pred             ccCCCCCCCEEEccCCCCCCC------CCCCccccCccCcEEEccCCc
Q psy5270          66 GFGAFPVLEVLDLTYNNLNEQ------SLPGNFFMLETLRALYLGDND  107 (352)
Q Consensus        66 ~~~~l~~L~~L~Ls~N~l~g~------~~p~~~~~l~~L~~L~l~~N~  107 (352)
                      .+..-++|+.|++++|.+...      .+-..+..-++|+.|+++.+.
T Consensus        95 aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          95 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            466667788888887765420      122223345677777776654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.39  E-value=1.6e-05  Score=62.47  Aligned_cols=107  Identities=14%  Similarity=0.115  Sum_probs=66.2

Q ss_pred             CCccEEEeeC-CcCc-c----cCccccCCCCCCEEEccCCcCc-c----cccccCCCCCCcEEEccCCCCC-----cccc
Q psy5270           2 LYITRITLSH-NKLK-E----IPPGLANLVNLEILTLFNNQIE-T----LPTSLSSLPKLRILNLGMNRLS-----SLPR   65 (352)
Q Consensus         2 ~~L~~L~Ls~-N~l~-~----ip~~l~~l~~L~~L~L~~N~l~-~----ip~~l~~L~~L~~L~L~~N~l~-----~ip~   65 (352)
                      +.|++|++++ +.++ +    +-..+...++|++|++++|.++ .    +-..+...+.++.+++++|.++     .+-.
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            5677888876 4565 2    2334556777888888888776 1    2234556677888888888776     1334


Q ss_pred             ccCCCCCCCEEEc--cCCCCCC---CCCCCccccCccCcEEEccCCcc
Q psy5270          66 GFGAFPVLEVLDL--TYNNLNE---QSLPGNFFMLETLRALYLGDNDF  108 (352)
Q Consensus        66 ~~~~l~~L~~L~L--s~N~l~g---~~~p~~~~~l~~L~~L~l~~N~l  108 (352)
                      .+...++|+.++|  ++|.+..   ..+-..+...++|+.|+++.+..
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            5666777776555  4555532   01233345667788888776654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.36  E-value=3.4e-05  Score=60.63  Aligned_cols=90  Identities=18%  Similarity=0.212  Sum_probs=66.3

Q ss_pred             cCCCCCCEEEccCC-cCc--c---cccccCCCCCCcEEEccCCCCC-c----cccccCCCCCCCEEEccCCCCCCCC---
Q psy5270          22 ANLVNLEILTLFNN-QIE--T---LPTSLSSLPKLRILNLGMNRLS-S----LPRGFGAFPVLEVLDLTYNNLNEQS---   87 (352)
Q Consensus        22 ~~l~~L~~L~L~~N-~l~--~---ip~~l~~L~~L~~L~L~~N~l~-~----ip~~~~~l~~L~~L~Ls~N~l~g~~---   87 (352)
                      .+.++|++|+|+++ .++  .   +-..+...+.|+.|++++|.++ .    +-..+...+.|+.|++++|.++...   
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            35678999999974 565  2   3346778889999999999997 2    2334556788999999999987511   


Q ss_pred             CCCccccCccCcEEEccCCccccc
Q psy5270          88 LPGNFFMLETLRALYLGDNDFEVL  111 (352)
Q Consensus        88 ~p~~~~~l~~L~~L~l~~N~l~~i  111 (352)
                      +-..+...++|++|++++|++..+
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~  115 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVL  115 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCc
Confidence            112345567899999999987654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.93  E-value=0.0015  Score=50.62  Aligned_cols=88  Identities=18%  Similarity=0.156  Sum_probs=62.6

Q ss_pred             cCCCCCCEEEccC-CcCc--c---cccccCCCCCCcEEEccCCCCCc-----cccccCCCCCCCEEEccCCCCCCC---C
Q psy5270          22 ANLVNLEILTLFN-NQIE--T---LPTSLSSLPKLRILNLGMNRLSS-----LPRGFGAFPVLEVLDLTYNNLNEQ---S   87 (352)
Q Consensus        22 ~~l~~L~~L~L~~-N~l~--~---ip~~l~~L~~L~~L~L~~N~l~~-----ip~~~~~l~~L~~L~Ls~N~l~g~---~   87 (352)
                      .+.++|++|+|++ +.++  .   +-..+...++|+.|++++|.++.     +-..+...++++.+++++|.++..   .
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4668899999997 5676  2   33456788899999999999872     333456678899999999988641   1


Q ss_pred             CCCccccCccCcEEEc--cCCccc
Q psy5270          88 LPGNFFMLETLRALYL--GDNDFE  109 (352)
Q Consensus        88 ~p~~~~~l~~L~~L~l--~~N~l~  109 (352)
                      +-..+...++|+.++|  ++|.+.
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHhCccccEEeeccCCCcCc
Confidence            2244566778887666  456665

>d1frfs_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit {Desulfovibrio fructosovorans [TaxId: 878]}

class: Multi-domain proteins (alpha and beta)
fold: HydA/Nqo6-like
superfamily: HydA/Nqo6-like
family: Nickel-iron hydrogenase, small subunit
domain: Nickel-iron hydrogenase, small subunit
species: Desulfovibrio fructosovorans [TaxId: 878]

Probab=95.74  E-value=0.0014  Score=54.52  Aligned_cols=68  Identities=21%  Similarity=0.434  Sum_probs=50.8

Q ss_pred             cCCceeeeccccccCCcccccccc--cccCCCcccccce-ecCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhh
Q psy5270         281 LEPRWVISMGSCANGGGYYHYSYS--VVRGCDRIIPVDI-YVPGCPPTAEALMYGILQLQKKVKRMKILQSWY  350 (352)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~gcpp~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (352)
                      ......+..|.|+..+|+.....+  ...+++.++++++ .+|||||.|..++..|..++..  +..++-+|.
T Consensus       100 ~~ak~vIAvGtCA~~GGI~a~~~n~t~~~~v~~~i~~~vinIpGCPp~p~~i~~~l~~ll~g--~~p~ld~~~  170 (261)
T d1frfs_         100 AKAKGIICIGTCSPYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVVHVLTK--GIPDLDENG  170 (261)
T ss_dssp             HHCSEEEEETTHHHHCCSTTSTTCTTCEECHHHHHTSCCEEECSSSCCHHHHHHHHHHHHTT--CSCCBCTTS
T ss_pred             cCCCEEEEEecccccCCccccCCCCccccChhhhcCCceEEecCCCCCHHHHHHHHHHHHhC--CCccccccC
Confidence            356778999999999988755544  4557777788885 7999999999999999887653  233444443

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=95.49  E-value=0.0043  Score=51.10  Aligned_cols=80  Identities=30%  Similarity=0.439  Sum_probs=67.3

Q ss_pred             CcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccc
Q psy5270         117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD  196 (352)
Q Consensus       117 nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~  196 (352)
                      |+.....+.....|.|..+..|.|+.++|..+..+.|....|+.+|.++.++.+.++.++..    .+++++.+.|+++.
T Consensus       116 Nl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~~~~Y~asK~al~~lt~~la~el~~----~gIrvn~i~PG~v~  191 (240)
T d2bd0a1         116 NLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFRHSSIYCMSKFGQRGLVETMRLYARK----CNVRITDVQPGAVY  191 (240)
T ss_dssp             HTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHTT----TTEEEEEEEECCBC
T ss_pred             eehHHHHHHHHHhHHHHhcCCCceEEEechhhcCCCCCChHHHHHHHHHHHHHHHHHHHhCc----CCeEEEEeeeCccc
Confidence            45555555666788998888999999999999999999999999999999999999877754    37899999999988


Q ss_pred             cCCc
Q psy5270         197 TGLC  200 (352)
Q Consensus       197 ~~~l  200 (352)
                      ++..
T Consensus       192 T~~~  195 (240)
T d2bd0a1         192 TPMW  195 (240)
T ss_dssp             STTT
T ss_pred             Cchh
Confidence            7654

>d1wuis1 e.19.1.1 (S:1-267) Nickel-iron hydrogenase, small subunit {Desulfovibrio vulgaris [TaxId: 881]}

class: Multi-domain proteins (alpha and beta)
fold: HydA/Nqo6-like
superfamily: HydA/Nqo6-like
family: Nickel-iron hydrogenase, small subunit
domain: Nickel-iron hydrogenase, small subunit
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=95.27  E-value=0.0059  Score=50.89  Aligned_cols=59  Identities=27%  Similarity=0.435  Sum_probs=44.8

Q ss_pred             cCCceeeeccccccCCcccccccccc--cCCC----cccccceecCCCCCCHHHHHHHHHHHHHH
Q psy5270         281 LEPRWVISMGSCANGGGYYHYSYSVV--RGCD----RIIPVDIYVPGCPPTAEALMYGILQLQKK  339 (352)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~gcpp~~~~~~~~~~~~~~~  339 (352)
                      ...+..+..|.|+..+|+.....+.-  .+++    ....+|+++|||||.|..++..|..++..
T Consensus       103 ~~ak~vVAvGtCA~~GGI~a~~~~~t~~~~~~~~l~~~~~vdi~IpGCPp~p~~i~~~l~~~l~~  167 (267)
T d1wuis1         103 PKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGVKAINIAGCPPNPYNLVGTIVYYLKN  167 (267)
T ss_dssp             GGSSEEEEESHHHHHCCGGGSTTCTTCEECHHHHHGGGTCCCEEECSSSCCHHHHHHHHHHHHHH
T ss_pred             hcCCEEEEeechhccCCccccCCCCcccccccccccccCCCeEEeCCCCCCHHHHHHHHHHHHhc
Confidence            46778899999999998876554422  2332    34458999999999999999999876654

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.88  E-value=0.0064  Score=51.45  Aligned_cols=80  Identities=36%  Similarity=0.514  Sum_probs=64.8

Q ss_pred             CcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccc
Q psy5270         117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD  196 (352)
Q Consensus       117 nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~  196 (352)
                      |+.....+....+|.|..+..|.|+.++|..+..+.|....|+.+|.++.++.+.+..++..    .+++++.+.|+++.
T Consensus       114 N~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~~~~~~~~~Y~asKaal~~l~~~la~El~~----~gIrVn~V~PG~v~  189 (285)
T d1jtva_         114 NVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLP----FGVHLSLIECGPVH  189 (285)
T ss_dssp             HTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECCBC
T ss_pred             chhHHHHHHHHHHHHHHHcCCCceEEEechhhcCCCCCchHHHHHHHHHHHHHHHHHHHhhc----cCcEEEEEecCCCC
Confidence            34444445556689999888999999999999999999999999999999999999888754    37899999999887


Q ss_pred             cCCc
Q psy5270         197 TGLC  200 (352)
Q Consensus       197 ~~~l  200 (352)
                      ++..
T Consensus       190 T~~~  193 (285)
T d1jtva_         190 TAFM  193 (285)
T ss_dssp             C---
T ss_pred             ChHH
Confidence            7554

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=94.81  E-value=0.0053  Score=50.69  Aligned_cols=79  Identities=25%  Similarity=0.404  Sum_probs=66.5

Q ss_pred             CcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccc
Q psy5270         117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD  196 (352)
Q Consensus       117 nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~  196 (352)
                      |+.....+.....|.|..+..|.|+.++|..+..+.+....|..+|.++.++.+.++.++..+    +++++.+.|+++.
T Consensus       110 Nl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~~~~~Y~asKaal~~ltk~lA~el~~~----gIrvN~I~PG~i~  185 (244)
T d1edoa_         110 NLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASR----NINVNVVCPGFIA  185 (244)
T ss_dssp             HTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHHTT----TEEEEEEEECSBC
T ss_pred             hhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhcCCCCCCHHHHHHHHHHHHChHHHHHHHhhh----CcEEEEEecceec
Confidence            444455555566888988889999999999999999999999999999999999999888653    7899999999887


Q ss_pred             cCC
Q psy5270         197 TGL  199 (352)
Q Consensus       197 ~~~  199 (352)
                      ++.
T Consensus       186 T~~  188 (244)
T d1edoa_         186 SDM  188 (244)
T ss_dssp             SHH
T ss_pred             cHH
Confidence            654

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.74  E-value=0.0097  Score=49.04  Aligned_cols=80  Identities=38%  Similarity=0.532  Sum_probs=66.2

Q ss_pred             CcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccc
Q psy5270         117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD  196 (352)
Q Consensus       117 nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~  196 (352)
                      |+.....+.....|.|..+..|.|+.++|..+..+.+....|+.+|.++.++.+.++.++..+    +++++.+.|+++.
T Consensus       111 Nl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~~~~Y~asKaal~~ltk~lA~el~~~----gIrVN~I~PG~i~  186 (244)
T d1nffa_         111 NLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPS----GIRVNSIHPGLVK  186 (244)
T ss_dssp             HTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCBC
T ss_pred             ccchhhHHHHHHHhHHHhcCcceEEeccccccccccccccchhhHHHHHHHHHHHHHHHhccc----CEEEEEEeeCCcc
Confidence            344444445556788888889999999999999999999999999999999999998887653    7899999999987


Q ss_pred             cCCc
Q psy5270         197 TGLC  200 (352)
Q Consensus       197 ~~~l  200 (352)
                      ++..
T Consensus       187 T~~~  190 (244)
T d1nffa_         187 TPMT  190 (244)
T ss_dssp             SGGG
T ss_pred             ChhH
Confidence            7654

>d1yq9a1 e.19.1.1 (A:4-264) Nickel-iron hydrogenase, small subunit {Desulfovibrio gigas [TaxId: 879]}

class: Multi-domain proteins (alpha and beta)
fold: HydA/Nqo6-like
superfamily: HydA/Nqo6-like
family: Nickel-iron hydrogenase, small subunit
domain: Nickel-iron hydrogenase, small subunit
species: Desulfovibrio gigas [TaxId: 879]

Probab=94.65  E-value=0.0069  Score=50.26  Aligned_cols=59  Identities=25%  Similarity=0.478  Sum_probs=43.8

Q ss_pred             cCCceeeeccccccCCccccccccccc--CCC----cccccceecCCCCCCHHHHHHHHHHHHHH
Q psy5270         281 LEPRWVISMGSCANGGGYYHYSYSVVR--GCD----RIIPVDIYVPGCPPTAEALMYGILQLQKK  339 (352)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~gcpp~~~~~~~~~~~~~~~  339 (352)
                      ......+..|.|+..+|+.....+.-.  +++    .....++.+|||||.|..++..|.++...
T Consensus        98 ~~ak~vVAvGtCA~~GGI~a~~~~~t~~~~~~~~~~~~~~~~i~IpGCPp~p~~i~~~l~~ll~g  162 (261)
T d1yq9a1          98 PKAKAVIAIGTCATYGGVQAAKPNPTGTVGVNEALGKLGVKAINIAGCPPNPMNFVGTVVHLLTK  162 (261)
T ss_dssp             GGSSEEEEEHHHHHHCCGGGSTTCTTCEECHHHHHGGGTCCCEEECSSSCCHHHHHHHHHHHHHT
T ss_pred             hcCCEEEEecchhhcCCccccCCCccCcccccccccccCCCeEEeCCCCCCHHHHHHHHHHHHhC
Confidence            456788899999999887765444322  222    23346799999999999999999987754

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.64  E-value=0.012  Score=48.74  Aligned_cols=79  Identities=22%  Similarity=0.228  Sum_probs=65.5

Q ss_pred             CcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccc
Q psy5270         117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD  196 (352)
Q Consensus       117 nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~  196 (352)
                      |+.....+.....|.|..+..|.|+.++|..+..+.+....|+.+|.++.++.+.++.++..+    +++++.+.|+++.
T Consensus       103 nl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~~~~~~~~~Y~asKaal~~lt~~lA~ela~~----gIrVN~I~PG~i~  178 (252)
T d1zmta1         103 LQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGACTLANALSKELGEY----NIPVFAIGPNYLH  178 (252)
T ss_dssp             HTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGG----TCCEEEEEESSBC
T ss_pred             HhHHHHHHHHHHHHhhcccccceeecccccccccccccccccccccccHHHHHHHHHHHhccc----CcEEEEEecCCCc
Confidence            344444455566788888888999999999999999999999999999999999998887643    7899999999887


Q ss_pred             cCC
Q psy5270         197 TGL  199 (352)
Q Consensus       197 ~~~  199 (352)
                      +..
T Consensus       179 T~~  181 (252)
T d1zmta1         179 SED  181 (252)
T ss_dssp             CBT
T ss_pred             Ccc
Confidence            654

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=94.60  E-value=0.0089  Score=49.36  Aligned_cols=80  Identities=26%  Similarity=0.408  Sum_probs=63.7

Q ss_pred             CcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccc
Q psy5270         117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD  196 (352)
Q Consensus       117 nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~  196 (352)
                      |+.....+.....|.|..+..|.|+.++|..+..+.|....|+.+|.++.++.+.++.++..+    +++++.+.|+++.
T Consensus       111 Nl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~~~~~Y~asKaal~~ltk~lA~ela~~----gIrVN~I~PG~i~  186 (247)
T d2ew8a1         111 NVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKIEAYTHYISTKAANIGFTRALASDLGKD----GITVNAIAPSLVR  186 (247)
T ss_dssp             HTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCCSSCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCC-
T ss_pred             ehhhhhHHHHHHHhHHHhcCCCCccccccchhcccCcccccchhhhccHHHHHHHHHHHhccc----CeEEEEEeeCCCC
Confidence            444555555566888988888999999999999999999999999999999999998887543    7899999999887


Q ss_pred             cCCc
Q psy5270         197 TGLC  200 (352)
Q Consensus       197 ~~~l  200 (352)
                      ++..
T Consensus       187 T~~~  190 (247)
T d2ew8a1         187 TATT  190 (247)
T ss_dssp             ----
T ss_pred             Cccc
Confidence            7643

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=94.55  E-value=0.0089  Score=49.74  Aligned_cols=80  Identities=31%  Similarity=0.355  Sum_probs=64.8

Q ss_pred             CcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccc
Q psy5270         117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD  196 (352)
Q Consensus       117 nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~  196 (352)
                      |+.....+.....|.|..+..|.|+.++|..+..+.|....|+.+|.++.++.+.++.++..    .+++++.+.|+++.
T Consensus       114 Nl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~~~~~Y~asKaal~~lt~~lA~el~~----~gIrVN~I~PG~i~  189 (260)
T d1x1ta1         114 NLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHGVVGFTKVTALETAG----QGITANAICPGWVR  189 (260)
T ss_dssp             HTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHTT----TTEEEEEEEECCBC
T ss_pred             cccccccccchhhhhHhhcCCceEeecccccceeccCCcchhhhhhhhHHHhHHHHHHHhch----hCcEEEEEecCCCC
Confidence            34444455556688888888899999999999999999999999999999999999888754    37899999999987


Q ss_pred             cCCc
Q psy5270         197 TGLC  200 (352)
Q Consensus       197 ~~~l  200 (352)
                      ++..
T Consensus       190 T~~~  193 (260)
T d1x1ta1         190 TPLV  193 (260)
T ss_dssp             C---
T ss_pred             Chhh
Confidence            7654

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.47  E-value=0.0081  Score=49.74  Aligned_cols=80  Identities=30%  Similarity=0.471  Sum_probs=64.8

Q ss_pred             CcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccc
Q psy5270         117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD  196 (352)
Q Consensus       117 nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~  196 (352)
                      |+.....+.....|.|..+..|.|+.++|..+..+.+....|..+|.++.++.+.++.++..+    +++++.+.|+++.
T Consensus       118 Nl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~~~~~Y~asKaal~~ltr~lA~el~~~----gIrVN~V~PG~v~  193 (251)
T d2c07a1         118 NLNSLFYITQPISKRMINNRYGRIINISSIVGLTGNVGQANYSSSKAGVIGFTKSLAKELASR----NITVNAIAPGFIS  193 (251)
T ss_dssp             HTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBC
T ss_pred             eehhhhhhhhhcCcccccCCCeEEEEECCHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhhh----CeEEEEEccCCEe
Confidence            344445555556788888889999999999999999999999999999999999998887543    7899999999987


Q ss_pred             cCCc
Q psy5270         197 TGLC  200 (352)
Q Consensus       197 ~~~l  200 (352)
                      ++..
T Consensus       194 T~~~  197 (251)
T d2c07a1         194 SDMT  197 (251)
T ss_dssp             C---
T ss_pred             cccc
Confidence            7654

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=94.28  E-value=0.007  Score=49.89  Aligned_cols=79  Identities=27%  Similarity=0.444  Sum_probs=66.0

Q ss_pred             CcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccc
Q psy5270         117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD  196 (352)
Q Consensus       117 nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~  196 (352)
                      |+.....+.....|.|..+..|.|+.++|..+..+.+....|+.+|.++.++.+.++.++..+    +++++.+.|+.+.
T Consensus       109 Nl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~~~~~~Y~asKaal~~lt~~lA~ela~~----gIrVN~I~PG~i~  184 (243)
T d1q7ba_         109 NLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAAKAGLIGFSKSLAREVASR----GITVNVVAPGFIE  184 (243)
T ss_dssp             HTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBC
T ss_pred             eechhhhhHHHHHHHHHHcCCCEeeeecchhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhCcc----CeEEEEEecceEe
Confidence            444455555666889988888999999999999899999999999999999999998887653    7899999999887


Q ss_pred             cCC
Q psy5270         197 TGL  199 (352)
Q Consensus       197 ~~~  199 (352)
                      ++.
T Consensus       185 T~~  187 (243)
T d1q7ba_         185 TDM  187 (243)
T ss_dssp             CHH
T ss_pred             chh
Confidence            654

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=94.25  E-value=0.0094  Score=49.62  Aligned_cols=79  Identities=33%  Similarity=0.467  Sum_probs=66.4

Q ss_pred             CcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccc
Q psy5270         117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD  196 (352)
Q Consensus       117 nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~  196 (352)
                      |+.....+.....|.|..+..|.|+.++|..+..+.|....|..+|.++.++.+.++.++..+    +++++.+.|+++.
T Consensus       114 nl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~~~~~~Y~asKaal~~ltk~lA~el~~~----gIrVN~I~PG~v~  189 (260)
T d1zema1         114 NVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLAPY----NIRVNAISPGYMG  189 (260)
T ss_dssp             HTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCCTTBHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBC
T ss_pred             cccccccchhhHHhhhhhhcCCCCCeeechhhccCCcchHHHHHHHHHHHHHHHHHHHHhhhh----CCEEEEeccCccc
Confidence            444555555666888998899999999999999999999999999999999999998887543    7899999999887


Q ss_pred             cCC
Q psy5270         197 TGL  199 (352)
Q Consensus       197 ~~~  199 (352)
                      ++.
T Consensus       190 T~~  192 (260)
T d1zema1         190 PGF  192 (260)
T ss_dssp             SSH
T ss_pred             Ccc
Confidence            754

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=94.23  E-value=0.011  Score=49.05  Aligned_cols=79  Identities=33%  Similarity=0.407  Sum_probs=65.2

Q ss_pred             CcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccc
Q psy5270         117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD  196 (352)
Q Consensus       117 nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~  196 (352)
                      |+.....+.....|.|..+..|.|+.++|..+..+.|....|+.+|.++.++.+.++.++..    .+++++.+.|+++.
T Consensus       115 Nl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~~~~Y~asKaal~~lt~~lA~el~~----~gIrVN~i~PG~v~  190 (258)
T d1iy8a_         115 NLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAKHGVVGLTRNSAVEYGR----YGIRINAIAPGAIW  190 (258)
T ss_dssp             HTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSBCSSBHHHHHHHHHHHHHHHHHHHHHGG----GTCEEEEEEECSBC
T ss_pred             hccchhhhhhhhHhhhhhhcCCCCcccccHhhccCCCCchHHHHHHHHHHHHHHHHHHHhCc----cCceEEEEeeCccc
Confidence            34444445555678888888999999999999999999999999999999999999888754    37899999999887


Q ss_pred             cCC
Q psy5270         197 TGL  199 (352)
Q Consensus       197 ~~~  199 (352)
                      ++.
T Consensus       191 T~~  193 (258)
T d1iy8a_         191 TPM  193 (258)
T ss_dssp             SHH
T ss_pred             CHH
Confidence            653

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=94.17  E-value=0.011  Score=48.91  Aligned_cols=79  Identities=24%  Similarity=0.273  Sum_probs=65.9

Q ss_pred             CcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccc
Q psy5270         117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD  196 (352)
Q Consensus       117 nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~  196 (352)
                      |+.....+.....|.|.++..|.|+.++|..+..+.+....|+.+|.++.++.+.++.++..+    +++++.+.|+.+.
T Consensus       107 Nl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~~~~~~~~~Y~asKaal~~ltk~lA~el~~~----gIrVN~I~PG~v~  182 (248)
T d2d1ya1         107 NLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSLALDLAPL----RIRVNAVAPGAIA  182 (248)
T ss_dssp             HTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBCTTBHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBC
T ss_pred             hhhhHhhhhhhhcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHhhhh----CcEEEEEeeCCCC
Confidence            444455555566888988888999999999999999999999999999999999998887643    7899999999887


Q ss_pred             cCC
Q psy5270         197 TGL  199 (352)
Q Consensus       197 ~~~  199 (352)
                      ++.
T Consensus       183 T~~  185 (248)
T d2d1ya1         183 TEA  185 (248)
T ss_dssp             CHH
T ss_pred             Cch
Confidence            653

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=94.07  E-value=0.013  Score=48.58  Aligned_cols=79  Identities=42%  Similarity=0.582  Sum_probs=65.4

Q ss_pred             CcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccc
Q psy5270         117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD  196 (352)
Q Consensus       117 nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~  196 (352)
                      |+.....+.....|.|..+..|.|+.++|..+..+.+....|..+|.++.++.+.++.++..+    +++++.+.|+++.
T Consensus       110 N~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~~~~~~~~~Y~asKaal~~lt~~lA~e~a~~----gIrVN~I~PG~v~  185 (254)
T d1hdca_         110 NLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVELGTD----RIRVNSVHPGMTY  185 (254)
T ss_dssp             HTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBC
T ss_pred             HhhHHHHHHHHHHHHHhhcCCCeecccccchhcccccchhhHHHHHHHHHHHHHHHHHHhCCC----ceEEEEeeeCccc
Confidence            344444555556788888889999999999999999999999999999999999998887543    7899999999887


Q ss_pred             cCC
Q psy5270         197 TGL  199 (352)
Q Consensus       197 ~~~  199 (352)
                      ++.
T Consensus       186 T~~  188 (254)
T d1hdca_         186 TPM  188 (254)
T ss_dssp             CHH
T ss_pred             Ccc
Confidence            653

>d1cc1s_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit {Desulfomicrobium baculatum [TaxId: 899]}

class: Multi-domain proteins (alpha and beta)
fold: HydA/Nqo6-like
superfamily: HydA/Nqo6-like
family: Nickel-iron hydrogenase, small subunit
domain: Nickel-iron hydrogenase, small subunit
species: Desulfomicrobium baculatum [TaxId: 899]

Probab=93.88  E-value=0.015  Score=48.72  Aligned_cols=59  Identities=20%  Similarity=0.388  Sum_probs=44.6

Q ss_pred             cCCceeeeccccccCCccccccccccc--------CCCcccccceecCCCCCCHHHHHHHHHHHHHH
Q psy5270         281 LEPRWVISMGSCANGGGYYHYSYSVVR--------GCDRIIPVDIYVPGCPPTAEALMYGILQLQKK  339 (352)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~gcpp~~~~~~~~~~~~~~~  339 (352)
                      ......+..|.|+..+|+.....+.-.        +-+.++..|+.+|||||.|..+...+.++...
T Consensus       110 ~kak~vVAvGtCA~~GGI~a~~~n~t~~~~~~~~~~~~~~~~~~i~IpGCPp~pd~i~~tl~~~l~~  176 (278)
T d1cc1s_         110 PKSLATVAVGTCSAYGGIPAAEGNVTGSKSVRDFFADEKIEKLLVNVPGCPPHPDWMVGTLVAAWSH  176 (278)
T ss_dssp             GGSSEEEEESHHHHHCTGGGSTTCCSCEECHHHHHHHHTCCCCEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred             hcCCEEEEEecccccCCcccccCCCccchhhheecCcCCcCCcccccCCCCCCHHHHHHHHHHHHHh
Confidence            356778899999999887766554322        12335567899999999999999999887654

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.60  E-value=0.01  Score=48.95  Aligned_cols=84  Identities=39%  Similarity=0.628  Sum_probs=66.7

Q ss_pred             CcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccc
Q psy5270         117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD  196 (352)
Q Consensus       117 nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~  196 (352)
                      |+.....+....+|.|..+..|.|+.++|..+..+.|....|+.+|.++.++.+.+..++..+ ...+++++.+.|+++.
T Consensus       115 N~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~~~~~~~~~Y~asKaal~~~~~~La~El~~~-~~~gI~V~~i~PG~v~  193 (244)
T d1yb1a_         115 NVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDELAAL-QITGVKTTCLCPNFVN  193 (244)
T ss_dssp             HTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCTTEEEEEEEETHHH
T ss_pred             eeeccHHHHHHHhhhHHhcCCceEEEeecchhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHhh-cCCCEEEEEEEcCCCC
Confidence            334444445556889988889999999999999999999999999999999999998887542 2356899999999988


Q ss_pred             cCCcc
Q psy5270         197 TGLCK  201 (352)
Q Consensus       197 ~~~l~  201 (352)
                      ++...
T Consensus       194 T~~~~  198 (244)
T d1yb1a_         194 TGFIK  198 (244)
T ss_dssp             HCSTT
T ss_pred             Chhhh
Confidence            76543

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.49  E-value=0.016  Score=47.51  Aligned_cols=79  Identities=27%  Similarity=0.397  Sum_probs=59.7

Q ss_pred             CcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccc
Q psy5270         117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD  196 (352)
Q Consensus       117 nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~  196 (352)
                      |+.....+.....|.|..+..|.|+.++|..+..+.+....|..+|.++.++.+.++.++..    .+++++.+.|+++.
T Consensus       104 Nl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaal~~lt~~lA~e~~~----~gIrVN~I~PG~v~  179 (237)
T d1uzma1         104 NLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIGNQANYAASKAGVIGMARSIARELSK----ANVTANVVAPGYID  179 (237)
T ss_dssp             HTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-----CCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBC
T ss_pred             hhhhhhhhhhhhhhcccccCCCceEEEcchhhccCCcccHHHHHHHHHHHHHHHHHHhhhhc----CCceeeeeeeCcCC
Confidence            34444444455578888888899999999999988999999999999999999998887754    37899999999887


Q ss_pred             cCC
Q psy5270         197 TGL  199 (352)
Q Consensus       197 ~~~  199 (352)
                      ++.
T Consensus       180 T~~  182 (237)
T d1uzma1         180 TDM  182 (237)
T ss_dssp             CHH
T ss_pred             Chh
Confidence            654

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.47  E-value=0.021  Score=47.27  Aligned_cols=79  Identities=28%  Similarity=0.325  Sum_probs=65.0

Q ss_pred             CcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccc
Q psy5270         117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD  196 (352)
Q Consensus       117 nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~  196 (352)
                      |+.....+.....|.|..+..+.|+.++|..+..+.+....|..+|.++.++.+.++.++..+    +++++.+.|+++.
T Consensus       118 Nl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~~~~~~~~~~~Y~asKaal~~lt~~lA~el~~~----gIrVN~I~PG~i~  193 (255)
T d1fmca_         118 NVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGEK----NIRVNGIAPGAIL  193 (255)
T ss_dssp             HTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCTTCHHHHHHHHHHHHHHHHHHHHHHTT----TEEEEEEEECSBC
T ss_pred             HHHHhhhhHHHHHhhhccccccccccccccchhccccccccchhHHHHHHHHHHHHHHHhCcc----CeEEEEeeeCcCc
Confidence            344444455556788888888999999999999999999999999999999999999887653    7899999999887


Q ss_pred             cCC
Q psy5270         197 TGL  199 (352)
Q Consensus       197 ~~~  199 (352)
                      ++.
T Consensus       194 T~~  196 (255)
T d1fmca_         194 TDA  196 (255)
T ss_dssp             SHH
T ss_pred             ChH
Confidence            653

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.40  E-value=0.018  Score=47.80  Aligned_cols=79  Identities=27%  Similarity=0.293  Sum_probs=53.1

Q ss_pred             cccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccccc
Q psy5270         118 LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT  197 (352)
Q Consensus       118 l~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~  197 (352)
                      +.....+.....|.|..+..|.|+.++|..+..+.+....|..+|.++.++.+.++.++..    .+++++.+.|+++.+
T Consensus       118 l~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~~~~~Y~asKaal~~lt~~lA~e~~~----~gIrVN~V~PG~i~T  193 (259)
T d1xq1a_         118 LESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSATKGALNQLARNLACEWAS----DGIRANAVAPAVIAT  193 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCEEEEEC----------CCHHHHHHHHHHHHHHHHHHHHGG----GTCEEEEEECCSCC-
T ss_pred             hhhheeeehhhhhcccccccccccccccccccccccccccccccccchhhhhHHHHHHhcc----cCeEEEEeccCcccC
Confidence            3344444445578888888899999999999888888899999999999999999888754    378999999998877


Q ss_pred             CCc
Q psy5270         198 GLC  200 (352)
Q Consensus       198 ~~l  200 (352)
                      +..
T Consensus       194 ~~~  196 (259)
T d1xq1a_         194 PLA  196 (259)
T ss_dssp             ---
T ss_pred             HHh
Confidence            653

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=92.99  E-value=0.021  Score=47.40  Aligned_cols=78  Identities=27%  Similarity=0.319  Sum_probs=63.7

Q ss_pred             cccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccccc
Q psy5270         118 LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT  197 (352)
Q Consensus       118 l~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~  197 (352)
                      +.....+.....|.|..+..|.|+.++|..+..+.|....|..+|.++.++.+.++.++..    .+++++.+.|+++.+
T Consensus       118 l~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~~~~Y~asKaal~~lt~~lA~el~~----~gIrVN~I~PG~i~T  193 (259)
T d2ae2a_         118 FEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGATKGAMDQLTRCLAFEWAK----DNIRVNGVGPGVIAT  193 (259)
T ss_dssp             THHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHTGG----GTEEEEEEEECSBCS
T ss_pred             cceeEEEEeeccchhhhhcccccccccccccccccccccchHHHHHHHHHHHHHHHHHhCc----CceEEEEeeeCcccC
Confidence            3444444455578888888999999999999999999999999999999999998887754    378999999998876


Q ss_pred             CC
Q psy5270         198 GL  199 (352)
Q Consensus       198 ~~  199 (352)
                      +.
T Consensus       194 ~~  195 (259)
T d2ae2a_         194 SL  195 (259)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=92.57  E-value=0.042  Score=45.29  Aligned_cols=78  Identities=26%  Similarity=0.240  Sum_probs=62.1

Q ss_pred             cccHHHHHHhcchhhHhhc---CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcc
Q psy5270         118 LKNLQIILETFLPDMMEKN---RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFM  194 (352)
Q Consensus       118 l~~L~~L~l~~~p~~~~~~---~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~  194 (352)
                      +.....+.....|.|.++.   .|.|+.++|..+..+.+....|+.+|.++.++.+.++.++...    +++++.+.|++
T Consensus       108 l~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~~~~~~~~Y~asKaal~~~t~~la~el~~~----gIrVn~I~PG~  183 (254)
T d1sbya1         108 FTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSASKAAVVSFTNSLAKLAPIT----GVTAYSINPGI  183 (254)
T ss_dssp             THHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTTSHHHHHHHHHHHHHHHHHHHHHHHH----SEEEEEEEECS
T ss_pred             hHHHHHHHHHHHHHhhhcccCCCceEEEEechhhccCCCCCHHHHHHHHHHHHHHHHHHhhcccc----CeEEEEEEeCC
Confidence            3333444445567776543   4789999999999999999999999999999999999887655    78999999998


Q ss_pred             cccCC
Q psy5270         195 VDTGL  199 (352)
Q Consensus       195 ~~~~~  199 (352)
                      +.++.
T Consensus       184 v~T~~  188 (254)
T d1sbya1         184 TRTPL  188 (254)
T ss_dssp             EESHH
T ss_pred             CcCcc
Confidence            87753

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=92.31  E-value=0.04  Score=45.61  Aligned_cols=79  Identities=24%  Similarity=0.280  Sum_probs=62.6

Q ss_pred             CcccHHHHHHhcchhhHhhcCc-eEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc
Q psy5270         117 NLKNLQIILETFLPDMMEKNRG-HIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV  195 (352)
Q Consensus       117 nl~~L~~L~l~~~p~~~~~~~g-~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~  195 (352)
                      |+.....+.....|.|..+..+ .|+.++|..+..+.|....|+.+|.++.++.+.++.++..+    +++++.+.|+++
T Consensus       116 Nl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~~~~~~~~Y~asKaal~~lt~~lA~e~~~~----gIrVN~I~PG~v  191 (261)
T d1geea_         116 NLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYAPK----GIRVNNIGPGAI  191 (261)
T ss_dssp             HTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECSB
T ss_pred             hcccchhHHHHHhhhhccccccccccccccchhcccCccccccccCCccchhhHHHHHHHhhhh----CcEEEEEeeCcC
Confidence            3444444455567888777655 58889999999899999999999999999999998887653    789999999988


Q ss_pred             ccCC
Q psy5270         196 DTGL  199 (352)
Q Consensus       196 ~~~~  199 (352)
                      .++.
T Consensus       192 ~T~~  195 (261)
T d1geea_         192 NTPI  195 (261)
T ss_dssp             CSGG
T ss_pred             cCHh
Confidence            7654

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=92.26  E-value=0.044  Score=45.21  Aligned_cols=79  Identities=25%  Similarity=0.343  Sum_probs=62.9

Q ss_pred             cccHHHHHHhcchhhHhhc-CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccc
Q psy5270         118 LKNLQIILETFLPDMMEKN-RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD  196 (352)
Q Consensus       118 l~~L~~L~l~~~p~~~~~~-~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~  196 (352)
                      +.....+.....|.+..+. .|.|+.++|..+..+.+....|+.+|.++.++.+.++.++..+    +++++.+.|+++.
T Consensus       111 l~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaal~~lt~~lA~el~~~----gIrVN~V~PG~i~  186 (256)
T d1k2wa_         111 VSGTLFMMQAVARAMIAGGRGGKIINMASQAGRRGEALVGVYCATKAAVISLTQSAGLNLIRH----GINVNAIAPGVVD  186 (256)
T ss_dssp             THHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCBC
T ss_pred             eeccccchhhccchhHHhccCCccccccchhhccccccccchhhhhhHHHHHHHHHHHHhccc----CeEEEEEecCCCC
Confidence            3444444445567766654 6899999999999999999999999999999999998887643    7899999999887


Q ss_pred             cCCc
Q psy5270         197 TGLC  200 (352)
Q Consensus       197 ~~~l  200 (352)
                      ++..
T Consensus       187 T~~~  190 (256)
T d1k2wa_         187 GEHW  190 (256)
T ss_dssp             CTTH
T ss_pred             chhh
Confidence            7643

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.93  E-value=0.051  Score=44.12  Aligned_cols=79  Identities=28%  Similarity=0.400  Sum_probs=64.6

Q ss_pred             CcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccc
Q psy5270         117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD  196 (352)
Q Consensus       117 nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~  196 (352)
                      |+.....+.....|.|..+..|.++.++|.....+.+....|..+|.++.++.+.++.++..+    +++++.+.|+++.
T Consensus        97 n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~~~~~~~~~Y~asKaal~~ltk~lA~ela~~----gIrVN~I~PG~v~  172 (234)
T d1o5ia_          97 LFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPIENLYTSNSARMALTGFLKTLSFEVAPY----GITVNCVAPGWTE  172 (234)
T ss_dssp             HTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBC
T ss_pred             hhhhhhhhhhcccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhccc----CeEEeecccCccc
Confidence            344444455566788888888999999999888888999999999999999999998887643    7899999999887


Q ss_pred             cCC
Q psy5270         197 TGL  199 (352)
Q Consensus       197 ~~~  199 (352)
                      ++.
T Consensus       173 T~~  175 (234)
T d1o5ia_         173 TER  175 (234)
T ss_dssp             CTT
T ss_pred             hhh
Confidence            654

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.92  E-value=0.047  Score=44.87  Aligned_cols=80  Identities=29%  Similarity=0.310  Sum_probs=63.6

Q ss_pred             CcccHHHHHHhcchhhHhhcCceEeecccccc-ccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc
Q psy5270         117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAG-IVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV  195 (352)
Q Consensus       117 nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~-l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~  195 (352)
                      |+.....+.....|.|..+..|.|+.++|..+ ..+.+....|+.+|.++.++.+.++.++..+    +++++.+.|+++
T Consensus       114 Nl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~~~~~~~~~~~Y~asKaal~~lt~~lA~e~~~~----gIrVN~I~PG~i  189 (251)
T d1vl8a_         114 NLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASKGGVASLTKALAKEWGRY----GIRVNVIAPGWY  189 (251)
T ss_dssp             HTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCCCSSSCHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECCB
T ss_pred             hhhhhhhhhhhhhhcccccccccccccccchhccccCccccchHHHHHhHHHHHHHHHHHhccc----CeEEEEEeeCcc
Confidence            45555556666688898888899999988654 4567778889999999999999998887543    789999999988


Q ss_pred             ccCCc
Q psy5270         196 DTGLC  200 (352)
Q Consensus       196 ~~~~l  200 (352)
                      .++..
T Consensus       190 ~T~~~  194 (251)
T d1vl8a_         190 RTKMT  194 (251)
T ss_dssp             CSTTT
T ss_pred             cCHHH
Confidence            77543

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.72  E-value=0.024  Score=48.11  Aligned_cols=77  Identities=26%  Similarity=0.324  Sum_probs=62.9

Q ss_pred             CcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccc
Q psy5270         117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD  196 (352)
Q Consensus       117 nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~  196 (352)
                      |+.....+.....|.|..+..|.|+.++|..+..+.+....|+.+|.++.++.+.++.++..    .+++++.+.|+.+.
T Consensus       121 Nl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~~~~~~~~~~Y~asKaal~~lt~~la~E~~~----~gIrVN~I~PG~~~  196 (302)
T d1gz6a_         121 HLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNFGQANYSAAKLGLLGLANTLVIEGRK----NNIHCNTIAPNAGS  196 (302)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTCHHHHHHHHHHHHHHHHHHHHTGG----GTEEEEEEEEECCS
T ss_pred             eehhhHHHHHHhHHHHHhCCCcEEEEeCChhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhc----cCCceeeeCCCCCC
Confidence            34444445556688998888999999999999999999999999999999999998877654    37899999998664


Q ss_pred             c
Q psy5270         197 T  197 (352)
Q Consensus       197 ~  197 (352)
                      +
T Consensus       197 t  197 (302)
T d1gz6a_         197 R  197 (302)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.11  E-value=0.066  Score=44.54  Aligned_cols=79  Identities=18%  Similarity=0.196  Sum_probs=62.8

Q ss_pred             CcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccc
Q psy5270         117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD  196 (352)
Q Consensus       117 nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~  196 (352)
                      |+.....+.....|.|..+..+.+...++..+..+.+....|+.+|.++.++.+.++.++..+    +++++.+.|+++.
T Consensus       117 Nl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~~~~~~~~~~~Y~asKaal~~ltk~lA~ela~~----gIrVN~I~PG~i~  192 (274)
T d1xhla_         117 NFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQAHSGYPYYACAKAALDQYTRCTAIDLIQH----GVRVNSVSPGAVA  192 (274)
T ss_dssp             HTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSSCCTTSHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECCBC
T ss_pred             cccccccccccccccccccccccccchhhhhccccCCCCceehhhhhHHHHHHHHHHHHHhHh----CCceeeeccCCCc
Confidence            344444455556788887778888888888888888888899999999999999998887643    7899999999887


Q ss_pred             cCC
Q psy5270         197 TGL  199 (352)
Q Consensus       197 ~~~  199 (352)
                      ++.
T Consensus       193 T~~  195 (274)
T d1xhla_         193 TGF  195 (274)
T ss_dssp             SSH
T ss_pred             Cch
Confidence            754

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.10  E-value=0.073  Score=44.22  Aligned_cols=79  Identities=24%  Similarity=0.326  Sum_probs=58.9

Q ss_pred             CcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccc
Q psy5270         117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD  196 (352)
Q Consensus       117 nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~  196 (352)
                      |+.....+.....|.|..+..+.|...++..+..+.+....|+.+|.++.++.+.++.++..    .+++++.+.|+++.
T Consensus       120 Nl~~~~~~~~~~~p~m~~~~g~iI~~~Ss~a~~~~~~~~~~Y~asKaal~~ltk~lA~el~~----~gIrVN~I~PG~i~  195 (272)
T d1xkqa_         120 NLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQAQPDFLYYAIAKAALDQYTRSTAIDLAK----FGIRVNSVSPGMVE  195 (272)
T ss_dssp             HTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHT----TTCEEEEEEECCBC
T ss_pred             hhhHHHHHHHhhcccccccCCccccccchhccccCCCCcchhhhHHHHHHHHHHHHHHHhcc----cCeEEEEEeeCCCc
Confidence            34444445555677777654444444455677888899999999999999999999988765    37899999999887


Q ss_pred             cCC
Q psy5270         197 TGL  199 (352)
Q Consensus       197 ~~~  199 (352)
                      ++.
T Consensus       196 T~~  198 (272)
T d1xkqa_         196 TGF  198 (272)
T ss_dssp             SSH
T ss_pred             chh
Confidence            654

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.07  E-value=0.038  Score=45.44  Aligned_cols=78  Identities=31%  Similarity=0.414  Sum_probs=62.6

Q ss_pred             CcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccc
Q psy5270         117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD  196 (352)
Q Consensus       117 nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~  196 (352)
                      |+.....+.....|.|.+ ..|.|+.++|..+..+.+....|+.+|.++.++.+.++.++..+    +++++.+.|+++.
T Consensus       111 Nl~g~~~~~~~~~p~m~~-~~G~Ii~isS~~~~~~~~~~~~Y~asKaal~~lt~~lA~e~a~~----gIrVN~I~PG~i~  185 (250)
T d1ydea1         111 NLLGTYTLTKLALPYLRK-SQGNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALALDESPY----GVRVNCISPGNIW  185 (250)
T ss_dssp             HTHHHHHHHHHHHHHHHH-HTCEEEEECCHHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECSBC
T ss_pred             hhhhHHHHHHHhhHHHHh-CCCCCcccccccccccccCcchhHHHHhhHHHHHHHHHHHhccc----CeEEEEEeeCCCC
Confidence            344444455555777764 46999999999999999999999999999999999998887543    7899999999887


Q ss_pred             cCC
Q psy5270         197 TGL  199 (352)
Q Consensus       197 ~~~  199 (352)
                      ++.
T Consensus       186 T~~  188 (250)
T d1ydea1         186 TPL  188 (250)
T ss_dssp             CHH
T ss_pred             Chh
Confidence            654

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=90.16  E-value=0.075  Score=43.65  Aligned_cols=79  Identities=33%  Similarity=0.468  Sum_probs=62.1

Q ss_pred             CcccHHHHHHhcchhhHhhc-CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc
Q psy5270         117 NLKNLQIILETFLPDMMEKN-RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV  195 (352)
Q Consensus       117 nl~~L~~L~l~~~p~~~~~~-~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~  195 (352)
                      |+.....+.....|.|..+. .+.|+.++|..+..+.|....|+.+|.++.++.+.++.++..+    +++++.+.|+++
T Consensus       109 Nl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaal~~ltk~lA~el~~~----gIrVN~I~PG~i  184 (255)
T d1gega_         109 NVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVRGLTQTAARDLAPL----GITVNGYCPGIV  184 (255)
T ss_dssp             HTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSB
T ss_pred             cccchhhhhhhhcchhhhhccccccccccchhhcccCcccccchhCHHHHHhhHHHHHHHhhhh----CcEEEEEecCcc
Confidence            34444444455577776665 4778889999998899999999999999999999998887643    789999999988


Q ss_pred             ccCC
Q psy5270         196 DTGL  199 (352)
Q Consensus       196 ~~~~  199 (352)
                      .++.
T Consensus       185 ~T~~  188 (255)
T d1gega_         185 KTPM  188 (255)
T ss_dssp             SSHH
T ss_pred             cChH
Confidence            7653

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=90.15  E-value=0.12  Score=42.63  Aligned_cols=80  Identities=26%  Similarity=0.360  Sum_probs=61.3

Q ss_pred             CcccHHHHHHhcchhhHhhcCceEeeccccccccCCCCc-cccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc
Q psy5270         117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNL-VPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV  195 (352)
Q Consensus       117 nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l-~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~  195 (352)
                      |+.....+.....|.|..+..|.++.+++..+....+.. ..|..+|.++.++.+.++.++..+    +++++.+.|+++
T Consensus       115 Nl~g~~~~~~~~~~~m~~~~~g~ii~iss~~~~~~~~~~~~~Y~asKaal~~lt~~lA~el~~~----gIrVN~I~PG~i  190 (268)
T d2bgka1         115 NVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGEGVSHVYTATKHAVLGLTTSLCTELGEY----GIRVNCVSPYIV  190 (268)
T ss_dssp             HTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCTTSCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEESCC
T ss_pred             hhcchhhhhhhhcchHhhcCCCCccccccccccccccccccccchhHHHHHhCHHHHHHHhChh----CeEEEecCCCCc
Confidence            344444455556788888888999999888777655543 478899999999999998887543    789999999988


Q ss_pred             ccCCc
Q psy5270         196 DTGLC  200 (352)
Q Consensus       196 ~~~~l  200 (352)
                      .++..
T Consensus       191 ~T~~~  195 (268)
T d2bgka1         191 ASPLL  195 (268)
T ss_dssp             SCCCC
T ss_pred             cChHH
Confidence            77654

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=89.84  E-value=0.091  Score=43.23  Aligned_cols=76  Identities=28%  Similarity=0.376  Sum_probs=60.7

Q ss_pred             cHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270         120 NLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL  199 (352)
Q Consensus       120 ~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~  199 (352)
                      ....+.....|.|..+..|.++.++|..+..+.|....|+.+|.++.++.+.++.++..    .+++++.+.|+++.++.
T Consensus       118 ~~~~~~~~~~~~m~~~~~g~ii~isS~~~~~~~~~~~~Y~~sK~al~~lt~~lA~el~~----~gIrvN~I~PG~i~T~~  193 (258)
T d1ae1a_         118 AAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLACEWAK----DNIRVNSVAPGVILTPL  193 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECSBC---
T ss_pred             cccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHhcCc----CcEEEEEEeeCcccCcc
Confidence            33334444567888888999999999999999999999999999999999988877754    37899999999887654

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=89.83  E-value=0.043  Score=45.26  Aligned_cols=78  Identities=33%  Similarity=0.518  Sum_probs=61.2

Q ss_pred             cccHHHHHHhcchh--hHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc
Q psy5270         118 LKNLQIILETFLPD--MMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV  195 (352)
Q Consensus       118 l~~L~~L~l~~~p~--~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~  195 (352)
                      +.....+.....|.  +..+..+.|+.++|..+..+.|....|..+|.++.++.+.++.++..    .+++++.+.|+++
T Consensus       111 l~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~~~~~~~~Y~asKaal~~ltk~lA~el~~----~gIrVN~I~PG~i  186 (257)
T d2rhca1         111 LTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLELAR----TGITVNAVCPGFV  186 (257)
T ss_dssp             THHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHTTT----SEEEEEEEEECSB
T ss_pred             hhhhhHHHHHHhHHHHHHhcCCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHhhh----hCcEEEEEeeCCC
Confidence            34444444455665  45566789999999999999999999999999999999999877753    3689999999988


Q ss_pred             ccCC
Q psy5270         196 DTGL  199 (352)
Q Consensus       196 ~~~~  199 (352)
                      .++.
T Consensus       187 ~T~~  190 (257)
T d2rhca1         187 ETPM  190 (257)
T ss_dssp             CSHH
T ss_pred             CCHH
Confidence            7654

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=89.83  E-value=0.1  Score=42.97  Aligned_cols=78  Identities=27%  Similarity=0.416  Sum_probs=56.9

Q ss_pred             cccHHHHHHhcchhhHhhcCceEeec-cccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccc
Q psy5270         118 LKNLQIILETFLPDMMEKNRGHIVGI-SSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD  196 (352)
Q Consensus       118 l~~L~~L~l~~~p~~~~~~~g~i~~i-ss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~  196 (352)
                      +.....+.....|.|.++. +.++.+ ++..+..+.|....|+.+|.++.++.+.++.++..+    +++++.+.|+++.
T Consensus       121 l~~~~~~~~~~~p~m~~~~-g~iI~~~S~~~~~~~~~~~~~Y~asKaal~~lt~~lA~el~~~----gIrVN~V~PG~v~  195 (264)
T d1spxa_         121 LRSVIALTKKAVPHLSSTK-GEIVNISSIASGLHATPDFPYYSIAKAAIDQYTRNTAIDLIQH----GIRVNSISPGLVA  195 (264)
T ss_dssp             THHHHHHHHHHHHHHHHHT-CEEEEECCTTSSSSCCTTSHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECCBC
T ss_pred             HHHHHHHHhhhCCcccccc-CcceeeeeeccccccCCCchhhhhhhhhHHHHHHHHHHHhccc----CeEEEEEeeCCCC
Confidence            4444444455577776554 555554 444567788888899999999999999998887543    7899999999987


Q ss_pred             cCCc
Q psy5270         197 TGLC  200 (352)
Q Consensus       197 ~~~l  200 (352)
                      ++..
T Consensus       196 T~~~  199 (264)
T d1spxa_         196 TGFG  199 (264)
T ss_dssp             CCC-
T ss_pred             Ccch
Confidence            7644

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.79  E-value=0.087  Score=42.97  Aligned_cols=77  Identities=25%  Similarity=0.357  Sum_probs=60.9

Q ss_pred             ccHHHHHHhcchhhHhh-cCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccccc
Q psy5270         119 KNLQIILETFLPDMMEK-NRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT  197 (352)
Q Consensus       119 ~~L~~L~l~~~p~~~~~-~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~  197 (352)
                      .....+.....|.+..+ ..|.|+.++|..+..+.|....|+.+|.++.++.+.++.++..    .+++++.+.|+.+.+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~~~~~~Y~asKaal~~lt~~lA~el~~----~gIrvN~I~PG~v~T  184 (244)
T d1pr9a_         109 RAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGP----HKIRVNAVNPTVVMT  184 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECCBCS
T ss_pred             hhhhHHHHHhhhHHHHhCCcceEeecccccccccccchhhhhhhHHHHHHHHHHHHHHhCC----CcEEEEEEeeCcCcC
Confidence            33334444456766654 5689999999999999999999999999999999999887754    378999999998876


Q ss_pred             CC
Q psy5270         198 GL  199 (352)
Q Consensus       198 ~~  199 (352)
                      +.
T Consensus       185 ~~  186 (244)
T d1pr9a_         185 SM  186 (244)
T ss_dssp             HH
T ss_pred             hH
Confidence            54

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=89.10  E-value=0.13  Score=42.02  Aligned_cols=79  Identities=25%  Similarity=0.290  Sum_probs=61.0

Q ss_pred             cccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccccc
Q psy5270         118 LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT  197 (352)
Q Consensus       118 l~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~  197 (352)
                      +.....+.....|.|. +..|.|+.++|..+..+.+....|..+|.++.++.+.++.++...  -.+++++.+.|+++.+
T Consensus       112 l~~~~~~~~~~~~~m~-~~~G~Iv~isS~~~~~~~~~~~~Y~asKaal~~lt~~lA~e~~~~--g~~IrVN~I~PG~i~T  188 (253)
T d1hxha_         112 TESVFIGCQQGIAAMK-ETGGSIINMASVSSWLPIEQYAGYSASKAAVSALTRAAALSCRKQ--GYAIRVNSIHPDGIYT  188 (253)
T ss_dssp             THHHHHHHHHHHHHHT-TTCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHHHH--TCCEEEEEEEESEECC
T ss_pred             hhHHHHHHHHHHHHHH-hcCCceecccchhhhcCccccccccchhHHHHHHHHHHHHHHhhc--CCCEEEEEEeECCCcC
Confidence            3333444445567764 346999999999999999999999999999999999998887642  1358999999998876


Q ss_pred             CC
Q psy5270         198 GL  199 (352)
Q Consensus       198 ~~  199 (352)
                      +.
T Consensus       189 ~~  190 (253)
T d1hxha_         189 PM  190 (253)
T ss_dssp             HH
T ss_pred             Hh
Confidence            53

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.05  E-value=0.11  Score=42.38  Aligned_cols=78  Identities=35%  Similarity=0.489  Sum_probs=60.8

Q ss_pred             cccHHHHHHhcchhhHhh-cCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccc
Q psy5270         118 LKNLQIILETFLPDMMEK-NRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVD  196 (352)
Q Consensus       118 l~~L~~L~l~~~p~~~~~-~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~  196 (352)
                      +.....+.....|.+..+ ..|.++.++|..+..+.|....|..+|.++.++.+.++.++..+    +++++.+.|+++.
T Consensus       106 l~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~Y~asKaal~~lt~~lA~e~~~~----gIrvN~I~PG~i~  181 (242)
T d1cyda_         106 LRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPH----KIRVNSVNPTVVL  181 (242)
T ss_dssp             THHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCBT
T ss_pred             hccchHHHHHhchhhhhhcccCcccccchhhccccCCccccccchHHHHHHHHHHHHHHhCcc----CeecccCCCCCcc
Confidence            333344444456766554 56899999999999899999999999999999999998877543    7899999999887


Q ss_pred             cCC
Q psy5270         197 TGL  199 (352)
Q Consensus       197 ~~~  199 (352)
                      ++.
T Consensus       182 T~~  184 (242)
T d1cyda_         182 TDM  184 (242)
T ss_dssp             THH
T ss_pred             CHH
Confidence            653

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.75  E-value=0.11  Score=42.41  Aligned_cols=79  Identities=30%  Similarity=0.570  Sum_probs=62.2

Q ss_pred             CcccHHHHHHhcchhhHhhcCceEeecccccc-ccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc
Q psy5270         117 NLKNLQIILETFLPDMMEKNRGHIVGISSMAG-IVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV  195 (352)
Q Consensus       117 nl~~L~~L~l~~~p~~~~~~~g~i~~iss~~~-l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~  195 (352)
                      |+.....+.....|.|..+..|.|+.++|..+ ..+.+....|+.+|.++.++.+.++.++..+    +++++.+.|+.+
T Consensus       105 n~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~~~~~~~Y~~sKaal~~l~r~lA~e~~~~----gIrvN~I~PG~i  180 (245)
T d2ag5a1         105 NVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGVVNRCVYSTTKAAVIGLTKSVAADFIQQ----GIRCNCVCPGTV  180 (245)
T ss_dssp             HTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCCTTBHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEESCE
T ss_pred             hhccchhHHHhhCcccccCCCceeeeeechhhccCCccchhHHHHHHHHHHHHHHHHHHHhhhh----CcEEEEEeecee
Confidence            34444555555678888888899999987655 4567778889999999999999998887654    899999999988


Q ss_pred             ccCC
Q psy5270         196 DTGL  199 (352)
Q Consensus       196 ~~~~  199 (352)
                      +++.
T Consensus       181 ~T~~  184 (245)
T d2ag5a1         181 DTPS  184 (245)
T ss_dssp             ECHH
T ss_pred             echh
Confidence            7654

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=88.12  E-value=0.066  Score=43.25  Aligned_cols=65  Identities=34%  Similarity=0.327  Sum_probs=55.7

Q ss_pred             hhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCC
Q psy5270         131 DMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGL  199 (352)
Q Consensus       131 ~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~  199 (352)
                      .+..+..|.|+.++|..+..+.+....|+.+|.++.++.+.++.++..+    +++++.+.|+++.+..
T Consensus       120 ~~~~~~~G~Ii~isS~~~~~~~~~~~~Y~asKaal~~lt~~lA~ela~~----gIrVN~V~PG~i~T~~  184 (241)
T d1uaya_         120 PDAEGQRGVIVNTASVAAFEGQIGQAAYAASKGGVVALTLPAARELAGW----GIRVVTVAPGLFDTPL  184 (241)
T ss_dssp             CCTTSCSEEEEEECCTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSCSSHH
T ss_pred             hhcccCceeeeeecchhhccCCCCchhhHHHHHHHHHHHHHHHHHHhhc----CCceeeecCCcccccc
Confidence            3555667999999999999999999999999999999999998887643    7899999999887654

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=87.81  E-value=0.21  Score=40.77  Aligned_cols=81  Identities=30%  Similarity=0.380  Sum_probs=62.3

Q ss_pred             CcccHHHHHHhcchhhHhhcCc-eEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc
Q psy5270         117 NLKNLQIILETFLPDMMEKNRG-HIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV  195 (352)
Q Consensus       117 nl~~L~~L~l~~~p~~~~~~~g-~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~  195 (352)
                      |+.....+.....|.|..+..| .|+.++|..+..+.|....|+.+|.++.++.+.++.+..  +.-.+++++.+.|+++
T Consensus       113 nl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~~~~~~~~Y~asKaal~~lt~~lA~e~~--l~~~gIrVN~I~PG~i  190 (251)
T d1zk4a1         113 NLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALDCA--LKDYDVRVNTVHPGYI  190 (251)
T ss_dssp             HTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHH--HTTCSEEEEEEEECCB
T ss_pred             cccccchhHHHHHHHHHhcCCCCceEeeeccceeccCCCchhHHHHHHHHhcchHHHHHHHh--cCCCcEEEEEEeCCCC
Confidence            3444445555567888877665 789999999988899999999999999999988876632  1234789999999988


Q ss_pred             ccCC
Q psy5270         196 DTGL  199 (352)
Q Consensus       196 ~~~~  199 (352)
                      .++.
T Consensus       191 ~T~~  194 (251)
T d1zk4a1         191 KTPL  194 (251)
T ss_dssp             CCHH
T ss_pred             CChh
Confidence            7654

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.27  E-value=0.14  Score=41.82  Aligned_cols=71  Identities=34%  Similarity=0.516  Sum_probs=54.5

Q ss_pred             HhcchhhHhhc---CceEeeccccccccCCCCccccccchhhhhhhhHH--hHHHHHHHHhcCCceeecccCcccccCCc
Q psy5270         126 ETFLPDMMEKN---RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEA--LAEELREDARNSKIKFTSIFPFMVDTGLC  200 (352)
Q Consensus       126 l~~~p~~~~~~---~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~--l~~~l~~~~~~~~n~~~g~~P~~~~~~~l  200 (352)
                      ....|.|..+.   .|.|+.++|..+..+.|....|+.+|.++.++.+.  ++.++.    -.+++++.+.|+++.++..
T Consensus       114 ~~~~~~m~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaal~~ltrs~ala~e~~----~~gIrVN~I~PG~i~T~~~  189 (254)
T d2gdza1         114 YLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLM----NSGVRLNAICPGFVNTAIL  189 (254)
T ss_dssp             HHHHHHHCGGGTCCCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHHHH----TCCEEEEEEEESCBSSHHH
T ss_pred             HHHHHHHHHhhcCCCcEEEeeccHhhccCCCCccchHHHHHHHHHHHHHHHHHHHhc----CCCEEEEEEEcCCCCChhh
Confidence            33455555443   47899999999999999999999999999999886  444443    3478999999998877543

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=86.93  E-value=0.21  Score=41.37  Aligned_cols=77  Identities=25%  Similarity=0.291  Sum_probs=59.6

Q ss_pred             cccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccccc
Q psy5270         118 LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT  197 (352)
Q Consensus       118 l~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~  197 (352)
                      +.....+.....|.|.++ .|.++.++|..+..+.+....|+.+|.++.++.+.++.++..     +++++.+.|+.+.+
T Consensus       116 l~g~~~~~~~~~p~m~~~-~g~iI~i~S~~~~~~~~~~~~Y~asKaal~~ltr~lA~ela~-----~IrVN~I~PG~i~T  189 (276)
T d1bdba_         116 VKGYIHAVKACLPALVAS-RGNVIFTISNAGFYPNGGGPLYTAAKHAIVGLVRELAFELAP-----YVRVNGVGSGGINS  189 (276)
T ss_dssp             THHHHHHHHHHHHHHHHH-TCEEEEECCGGGTSTTSSCHHHHHHHHHHHHHHHHHHHHHTT-----TCEEEEEEECCCCS
T ss_pred             hHHHHHHHHHHHHHHHhc-CCCceeeeechhccCCCCCchHHHHHHHHHHHHHHHHHHhhc-----ceEEcccCCCCEec
Confidence            344444445557777654 588888888888888888889999999999999999888742     48999999998877


Q ss_pred             CCc
Q psy5270         198 GLC  200 (352)
Q Consensus       198 ~~l  200 (352)
                      +..
T Consensus       190 ~~~  192 (276)
T d1bdba_         190 DLR  192 (276)
T ss_dssp             CCC
T ss_pred             CcC
Confidence            543

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.79  E-value=0.13  Score=41.80  Aligned_cols=61  Identities=30%  Similarity=0.390  Sum_probs=52.1

Q ss_pred             cCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccCCc
Q psy5270         136 NRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTGLC  200 (352)
Q Consensus       136 ~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~~l  200 (352)
                      ..|.|+.++|..+..+.|....|..+|.++.++.+.++.++..    .+++++.+.|+.+.++..
T Consensus       141 ~~G~Ii~isS~~~~~~~~~~~~Y~asKaal~~lt~~la~e~~~----~gIrvN~I~PG~i~T~~~  201 (248)
T d2o23a1         141 QRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIARDLAP----IGIRVMTIAPGLFGTPLL  201 (248)
T ss_dssp             CCEEEEEECCTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGG----GTEEEEEEEECCBCCC--
T ss_pred             CceEEEEecchhhccCCCCchHHHHHHHHHHHHHHHHHHHhcc----cCcceeeeccCceecchh
Confidence            5678999999999988999999999999999999999888764    378999999998877654

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=86.42  E-value=0.23  Score=40.25  Aligned_cols=78  Identities=29%  Similarity=0.306  Sum_probs=58.1

Q ss_pred             cccHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccccc
Q psy5270         118 LKNLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDT  197 (352)
Q Consensus       118 l~~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~  197 (352)
                      +.....+.....|.|.++..+.+..+++ ....+.+....|+.+|.++.++.+.++.++..+    +++++.+.|+++.+
T Consensus       109 l~~~~~~~~~~~~~m~~~~~~~i~~~ss-~~~~~~~~~~~Y~asKaal~~ltk~lA~ela~~----gIrVN~I~PG~v~T  183 (242)
T d1ulsa_         109 LTGSFLVAKAASEAMREKNPGSIVLTAS-RVYLGNLGQANYAASMAGVVGLTRTLALELGRW----GIRVNTLAPGFIET  183 (242)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCEEEEEECC-GGGGCCTTCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCC
T ss_pred             chhhhhhhhhccccccccccceeeeecc-ccccCCCCCcchHHHHHHHHHHHHHHHHHHhhh----CcEEEEEeeCcccC
Confidence            3344444445577777776666666655 455677888899999999999999998887653    78999999999877


Q ss_pred             CCc
Q psy5270         198 GLC  200 (352)
Q Consensus       198 ~~l  200 (352)
                      +..
T Consensus       184 ~~~  186 (242)
T d1ulsa_         184 RMT  186 (242)
T ss_dssp             TTT
T ss_pred             hhh
Confidence            654

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.23  E-value=0.16  Score=41.58  Aligned_cols=75  Identities=24%  Similarity=0.299  Sum_probs=58.5

Q ss_pred             cccHHHHHHhcchhhHhhc--CceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCccc
Q psy5270         118 LKNLQIILETFLPDMMEKN--RGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMV  195 (352)
Q Consensus       118 l~~L~~L~l~~~p~~~~~~--~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~  195 (352)
                      +.....+.....|.|..+.  .+.|+.++|..+..+.|....|+.+|.++.++.+.++.+      ..+++++.+.|+.+
T Consensus       127 ~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaal~~lt~~la~e------~~gIrVn~v~PG~i  200 (259)
T d1oaaa_         127 LTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPYKGWGLYCAGKAARDMLYQVLAAE------EPSVRVLSYAPGPL  200 (259)
T ss_dssp             THHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHH------CTTEEEEEEECCSB
T ss_pred             hhhhHHHHHHHHHHHHhcCCCcccccccccccccCCCccchHHHHHHHHHHHHHHHHHhC------CCCCEEEEEEcCCC
Confidence            3444444445567766543  578999999999999999999999999999999988754      35789999999988


Q ss_pred             ccC
Q psy5270         196 DTG  198 (352)
Q Consensus       196 ~~~  198 (352)
                      .++
T Consensus       201 ~T~  203 (259)
T d1oaaa_         201 DND  203 (259)
T ss_dssp             SSH
T ss_pred             CCH
Confidence            664

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.91  E-value=0.39  Score=39.38  Aligned_cols=76  Identities=29%  Similarity=0.458  Sum_probs=59.3

Q ss_pred             cHHHHHHhcchhhHhhcCceEeeccccccccCCCCccccccchhhhhhhhHHhHHHHHHHHhcCCceeecccCcccccC
Q psy5270         120 NLQIILETFLPDMMEKNRGHIVGISSMAGIVGLPNLVPYCASKFAVRGLMEALAEELREDARNSKIKFTSIFPFMVDTG  198 (352)
Q Consensus       120 ~L~~L~l~~~p~~~~~~~g~i~~iss~~~l~~lp~l~~~~~s~~~l~~~~~~l~~~l~~~~~~~~n~~~g~~P~~~~~~  198 (352)
                      ....+.....|.|. +..|.++.++|..+..+.|....|+.+|.++.++.+.+..++...  -.+++++.+.|+++.+.
T Consensus       126 ~~~~~~~~~lp~m~-~~~G~ii~isS~~~~~~~p~~~~Y~asKaal~~~~~~La~El~~~--~~~I~V~~v~PG~v~T~  201 (269)
T d1xu9a_         126 SYVVLTVAALPMLK-QSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVS--RVNVSITLCVLGLIDTE  201 (269)
T ss_dssp             HHHHHHHHHHHHHH-HHTCEEEEEEEGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHHHH--TCCCEEEEEEECCBCCH
T ss_pred             hHHHHHHHHHHHHH-hcCCcceEeccchhcCCCCCchHHHHHHHHHHHHHHHHHHHhhhc--CCCEEEEEEecCcCCCc
Confidence            33334444566664 557999999999999999999999999999999999998887532  23578888999988764