Psyllid ID: psy5284

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
Protein Sequence
MPPSCCVPTCKLMRNNSEKLSYHEIPSKEPLRTNWIKQIGILTGNKFWQPTSESAVVCSKHFIEPDFVETPLRRRLKPTSVPSVFYMMQGKPYFVPSRRRKYESPTTPNLFPNSQHHEIVNNEGNETRDIIDNSNVIENSKYDAFLQASFADKKFLEMLQLNLEMLEVANHFLADYSLLE
Secondary Structure (PSIPRED)
ccccEEEcccccccccccccEEEEccccHHHHHHHHHHHcccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEcccccccccccccEEEEEccccHHHHHHHHHHHcccccccccccccccEEEEcccccccHccccccccccccccccEEEEEccccccccccHcccccccccccccccccccccccccccccHHHEcccccccccEEEccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mppsccvptcklmrnnseklsyheipskeplrtnwIKQIGIltgnkfwqptsesavvcskhfiepdfvetplrrrlkptsvpsvfymmqgkpyfvpsrrrkyespttpnlfpnsqhheivnnegnetrdiidnsnvienskyDAFLQASFADKKFLEMLQLNLEMLEVANHFLADYSLLE
Flexible Loop (DISEMBL)
mppsccvptcklmrnnseklsyheipskeplrtnWIKQIGILTGNKFWQPTSESAVVCSKHFiepdfvetplrrrlkptsvpsvfymmqGKPYFVPSRRRKYESpttpnlfpnsqhheivnnegnetrDIIDNSNVIENSKYDAFLQASFADKKFLEMLQLNLEMLEVANHFLADYSLLE
Low Complexity Region (SEG)
MPPSCCVPTCKLMRNNSEKLSYHEIPSKEPLRTNWIKQIGILTGNKFWQPTSESAVVCSKHFIEPDFVETPLRRRLKPTSVPSVFYMMQGKPYFVPSRRRKYESPTTPNLFPNSQHHEIVNNEGNETRDIIDNSNVIENSKYDAFLQASFADKKFlemlqlnlemleVANHFLADYSLLE
Disordered region (IsUnstruct)
*****CVPTCKL*****************PLRTNWIKQIGILTGNKFWQPTSESAVVCSKHFIEPDFVETPLRRRLKPTSVPSVFYMMQGKPYFV**********************************IIDNSNVIENSKYDAFLQASFADKKFLEMLQLNLEMLEVANHFLADYS***
Disordered Region (DISOPRED)
MPPSCCVPTCKLMRNNSEKLSYHEIPSKEPLRTNWIKQIGILTGNKFWQPTSESAVVCSKHFIEPDFVETPLRRRLKPTSVPSVF************************************************************************MLQLNLEMLEVANHFL*DYSLL*
Disordered Region (DISEMBL)
MPPSCCVPTCKLMRNNSEKLSYHEIPSKEPLRTNWIKQIGILTGNKFWQPTSESAVVCSKHFIEPDFVETPLRRRLKPTSVPSVFYMMQGKPYFVPSRRRKYESPTTPNLFPNSQHHEIVNNEGNETRDIIDNSNVIENSKYDAFLQASFADKKFLEMLQLNLEMLEVANHFLADYSLLE
Disordered Region (DISPRO)
***SCCVPTCKLMRNNSEKLSYHEIPSKEPLRTNWIKQIGILTGNKFWQPTSESAVVCSKHFIEPDFVETPLRRRLKPTSVPSVFYMMQGK***************TP******************TRDIIDNSNVIENSKYDAFLQASFADKKFLEMLQLNLEMLEVANHFLADYSLLE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPPSCCVPTCKLMRNNSEKLSYHEIPSKEPLRTNWIKQIGILTGNKFWQPTSESAVVCSKHFIEPDFVETPLRRRLKPTSVPSVFYMMQGKPYFVPSRRRKYESPTTPNLFPNSQHHEIVNNEGNETRDIIDNSNVIENSKYDAFLQASFADKKFLEMLQLNLEMLEVANHFLADYSLLE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	180	2.2.26 [Sep-21-2011]
Q9H5L6	903	THAP domain-containing pr	yes	N/A	0.6	0.119	0.310	5e-08
Q8TBB0	222	THAP domain-containing pr	no	N/A	0.572	0.463	0.307	2e-06
Q8VCZ3	309	THAP domain-containing pr	yes	N/A	0.444	0.258	0.367	1e-05
Q9BT49	309	THAP domain-containing pr	no	N/A	0.444	0.258	0.356	2e-05
Q642B6	569	THAP domain-containing pr	no	N/A	0.505	0.159	0.317	0.0002
Q2TBI2	584	THAP domain-containing pr	no	N/A	0.455	0.140	0.326	0.0006
Q9H0W7	228	THAP domain-containing pr	no	N/A	0.444	0.350	0.317	0.0006
Q8WY91	577	THAP domain-containing pr	no	N/A	0.455	0.142	0.333	0.0007
Q9D305	217	THAP domain-containing pr	no	N/A	0.444	0.368	0.317	0.0007
Q6P3Z3	569	THAP domain-containing pr	no	N/A	0.455	0.144	0.333	0.0008

>sp|Q9H5L6|THAP9_HUMAN THAP domain-containing protein 9 OS=Homo sapiens GN=THAP9 PE=2 SV=2

 Score = 57.4 bits (137), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 8/116 (6%)

Query: 1   MPPSCCVPTCKL---MRNNSEKLSYHEIPSKEPLRTNWIKQIGILT--GNKFWQPTSESA 55
           M  SC    C     + +    LS+H+ P+    R+ WI+ +  +     K W P    A
Sbjct: 1   MTRSCSAVGCSTRDTVLSRERGLSFHQFPTDTIQRSKWIRAVNRVDPRSKKIWIP-GPGA 59

Query: 56  VVCSKHFIEPDFVETPLRRRLKPTSVPSV--FYMMQGKPYFVPSRRRKYESPTTPN 109
           ++CSKHF E DF    +RR+LK  +VPSV  + + QG      +R++  + P   N
Sbjct: 60  ILCSKHFQESDFESYGIRRKLKKGAVPSVSLYKIPQGVHLKGKARQKILKQPLPDN 115

Homo sapiens (taxid: 9606)

>sp|Q8TBB0|THAP6_HUMAN THAP domain-containing protein 6 OS=Homo sapiens GN=THAP6 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 14/117 (11%)

Query: 6   CVPTCKLMRNNSEKLSYHEIPSKEPLRTNWIKQIGILTGNK--FWQPTSESAVVCSKHFI 63
           C+P  KL     + L++H  P+ E ++  W+  +  L  N    W+P  +  V+CS+HF 
Sbjct: 14  CLPNSKL-----KGLTFHVFPTDENIKRKWVLAMKRLDVNAAGIWEP-KKGDVLCSRHFK 67

Query: 64  EPDFVETPLRRRLKPTSVPSVF---YMMQGKPYFVPSRRRKYESPTTPNLFPNSQHH 117
           + DF  +    +LKP  +PS+F   Y +QGK   +   R+ +   T P    N  HH
Sbjct: 68  KTDFDRSAPNIKLKPGVIPSIFDSPYHLQGKREKLHC-RKNFTLKTVPA--TNYNHH 121

Homo sapiens (taxid: 9606)

>sp|Q8VCZ3|THAP7_MOUSE THAP domain-containing protein 7 OS=Mus musculus GN=Thap7 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 42/87 (48%), Gaps = 7/87 (8%)

Query: 4  SCCVPTCKLMRNNSEKLSYHEIPSKE-PLRTNWIKQIGIL--TGNKFWQPTSESAVVCSK 60
           CC    +  RN    +S+H +P K+ P R  W+     L  +G   W PTSE    CSK
Sbjct: 9  GCCTRDTRETRNRG--ISFHRLPKKDNPRRGLWLANCQRLDPSGQGLWDPTSEYIYFCSK 66

Query: 61 HFIEPDF--VETPLRRRLKPTSVPSVF 85
          HF E  F  V      RLK  +VP++F
Sbjct: 67 HFEENCFELVGISGYHRLKEGAVPTIF 93

Chromatin-associated, histone tail-binding protein that represses transcription via recruitment of HDAC3 and nuclear hormone receptor corepressors.

Mus musculus (taxid: 10090)

>sp|Q9BT49|THAP7_HUMAN THAP domain-containing protein 7 OS=Homo sapiens GN=THAP7 PE=1 SV=2

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 7/87 (8%)

Query: 4  SCCVPTCKLMRNNSEKLSYHEIPSKE-PLRTNWIKQIGIL--TGNKFWQPTSESAVVCSK 60
           CC    +  RN    +S+H +P K+ P R  W+     L  +G   W P SE    CSK
Sbjct: 9  GCCTRDTRETRNRG--ISFHRLPKKDNPRRGLWLANCQRLDPSGQGLWDPASEYIYFCSK 66

Query: 61 HFIEPDF--VETPLRRRLKPTSVPSVF 85
          HF E  F  V      RLK  +VP++F
Sbjct: 67 HFEEDCFELVGISGYHRLKEGAVPTIF 93

Chromatin-associated, histone tail-binding protein that represses transcription via recruitment of HDAC3 and nuclear hormone receptor corepressors.

Homo sapiens (taxid: 9606)

>sp|Q642B6|THAP4_RAT THAP domain-containing protein 4 OS=Rattus norvegicus GN=Thap4 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 13/104 (12%)

Query: 5   CCVPTCKLMRNNSEK--LSYHEIPSKEPLR-TNWIKQIGILTGNKFWQPTSESAVVCSKH 61
           C    C   +   EK  +S+H  P K+  R   W+K +        W PT  S  +CS+H
Sbjct: 5   CAAVNCSNRQGKGEKRAVSFHRFPLKDSKRLIQWLKAVQ----RDNWTPTKYS-FLCSEH 59

Query: 62  FIEPDFVET--PLRRRLKPTSVPSVFYMMQ---GKPYFVPSRRR 100
           F +  F +      R LKPT+VPS+F++ +   G     P+RR+
Sbjct: 60  FTKDSFSKRLEDQHRLLKPTAVPSIFHLSEKKRGAGGHGPARRK 103

Rattus norvegicus (taxid: 10116)

>sp|Q2TBI2|THAP4_BOVIN THAP domain-containing protein 4 OS=Bos taurus GN=THAP4 PE=2 SV=2

 Score = 43.9 bits (102), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 5  CCVPTCKLMRNNSEK--LSYHEIPSKEPLR-TNWIKQIGILTGNKFWQPTSESAVVCSKH 61
          C    C   +   EK  +S+H  P K+  R   W+K +        W PT  S  +CS+H
Sbjct: 5  CAAANCSNRQGKGEKRAVSFHRFPLKDSKRLMQWLKAVQ----RDNWTPTKYS-FLCSEH 59

Query: 62 FIEPDFVE--TPLRRRLKPTSVPSVFYMMQGK 91
          F +  F +      R LKPT+VPS+F++ + K
Sbjct: 60 FTKDSFSKRLEDQHRLLKPTAVPSIFHLAEKK 91

Bos taurus (taxid: 9913)

>sp|Q9H0W7|THAP2_HUMAN THAP domain-containing protein 2 OS=Homo sapiens GN=THAP2 PE=1 SV=1

 Score = 43.9 bits (102), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 1  MPPSCCVPTCKLMRNNSEKLSYHEIPSKEPLRTNWIKQIGILTGNKFWQPTSESAVVCSK 60
          MP +C    C    N    +S+H  P     R  W++    L   K + P  +   +CSK
Sbjct: 1  MPTNCAAAGCATTYNKHINISFHRFPLDPKRRKEWVR----LVRRKNFVP-GKHTFLCSK 55

Query: 61 HFIEPDFVETPLRRRLKPTSVPSVF 85
          HF    F  T   RRLK  +VP++F
Sbjct: 56 HFEASCFDLTGQTRRLKMDAVPTIF 80

Homo sapiens (taxid: 9606)

>sp|Q8WY91|THAP4_HUMAN THAP domain-containing protein 4 OS=Homo sapiens GN=THAP4 PE=1 SV=2

 Score = 43.5 bits (101), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 11/93 (11%)

Query: 5  CCVPT-CKLMRNNSEK--LSYHEIPSKEPLR-TNWIKQIGILTGNKFWQPTSESAVVCSK 60
          CC    C   +   EK  +S+H  P K+  R   W+K +        W PT  S  +CS+
Sbjct: 4  CCAAVNCSNRQGKGEKRAVSFHRFPLKDSKRLIQWLKAVQ----RDNWTPTKYS-FLCSE 58

Query: 61 HFIEPDFVET--PLRRRLKPTSVPSVFYMMQGK 91
          HF +  F +      R LKPT+VPS+F++ + K
Sbjct: 59 HFTKDSFSKRLEDQHRLLKPTAVPSIFHLTEKK 91

Homo sapiens (taxid: 9606)

>sp|Q9D305|THAP2_MOUSE THAP domain-containing protein 2 OS=Mus musculus GN=Thap2 PE=2 SV=1

 Score = 43.5 bits (101), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 1  MPPSCCVPTCKLMRNNSEKLSYHEIPSKEPLRTNWIKQIGILTGNKFWQPTSESAVVCSK 60
          MP +C    C    N    +S+H  P     R  W++    L   K + P  +   +CSK
Sbjct: 1  MPTNCAAAGCAATYNKHINISFHRFPLDPKRRKEWVR----LVRRKNFVP-GKHTFLCSK 55

Query: 61 HFIEPDFVETPLRRRLKPTSVPSVF 85
          HF    F  T   RRLK  +VP++F
Sbjct: 56 HFEASCFDLTGQTRRLKMDAVPTIF 80

Mus musculus (taxid: 10090)

>sp|Q6P3Z3|THAP4_MOUSE THAP domain-containing protein 4 OS=Mus musculus GN=Thap4 PE=2 SV=1

 Score = 43.5 bits (101), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 11/93 (11%)

Query: 5  CCVPT-CKLMRNNSEK--LSYHEIPSKEPLR-TNWIKQIGILTGNKFWQPTSESAVVCSK 60
          CC    C   +   EK  +S+H  P K+  R   W+K +        W PT  S  +CS+
Sbjct: 4  CCAAVNCSNRQGKGEKRAVSFHRFPLKDSKRLIQWLKAVQ----RDNWTPTKYS-FLCSE 58

Query: 61 HFIEPDFVET--PLRRRLKPTSVPSVFYMMQGK 91
          HF +  F +      R LKPT+VPS+F++ + K
Sbjct: 59 HFTKDSFSKRLEDQHRLLKPTAVPSIFHLSEKK 91

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
241615798	231	conserved hypothetical protein [Ixodes s	0.761	0.593	0.333	1e-10
58379912	193	AGAP009530-PA [Anopheles gambiae str. PE	0.483	0.450	0.402	2e-09
346468253	332	hypothetical protein [Amblyomma maculatu	0.544	0.295	0.355	6e-09
241700819	314	conserved hypothetical protein [Ixodes s	0.566	0.324	0.371	1e-08
427786543	296	Hypothetical protein [Rhipicephalus pulc	0.811	0.493	0.319	6e-08
427787159	338	Hypothetical protein [Rhipicephalus pulc	0.438	0.233	0.373	9e-08
170066772	722	zinc finger protein 358 [Culex quinquefa	0.577	0.144	0.375	1e-07
241695299	301	hypothetical protein IscW_ISCW012574 [Ix	0.505	0.302	0.329	1e-07
241286592	219	conserved hypothetical protein [Ixodes s	0.472	0.388	0.414	1e-07
241802319	222	conserved hypothetical protein [Ixodes s	0.444	0.360	0.471	2e-07

>gi|241615798|ref|XP_002406808.1| conserved hypothetical protein [Ixodes scapularis] gi|215500875|gb|EEC10369.1| conserved hypothetical protein [Ixodes scapularis]

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 10/147 (6%)

Query: 1   MPPSCCVPTCKLMRNNSEKLSYHEIPSKEPLRTNWIKQI---GILTGNKFWQPTSESAVV 57
           +P +C VP C +   N+  +S+HEIPSK  LR  W+K+    G   G ++   +S  AV+
Sbjct: 1   VPKNCSVPLCTVTERNNAVVSFHEIPSKPELRAAWLKKSLRQGTSKGTEWV--SSSRAVI 58

Query: 58  CSKHFIEPDFVETPLRRRLKPTSVPSVFYMMQGKPYFVP---SRRRKYESPTTPNLFPNS 114
           CS HF + DF +   RR L   +VPSVF  ++   Y  P   S+RR+ E         ++
Sbjct: 59  CSLHFTKQDFKQGAKRRMLLSEAVPSVF--LEYPSYLQPAPASKRRQLEREFCETPSTST 116

Query: 115 QHHEIVNNEGNETRDIIDNSNVIENSK 141
             H     E  +T   + N N  E S+
Sbjct: 117 SAHPESPTETEDTFADVGNDNTTETSQ 143

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|58379912|ref|XP_310159.2| AGAP009530-PA [Anopheles gambiae str. PEST] gi|55244055|gb|EAA05877.2| AGAP009530-PA [Anopheles gambiae str. PEST]

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 5/92 (5%)

Query: 1  MPPSCCVPTCKLMRNNSEKLSYHEIPSKEP-LRTNWIKQIGILTGNKFWQPTSESAVVCS 59
          MP SC +P C L   +S+ +S+H+ P K P L   WI+  G    ++ W PT  SA +CS
Sbjct: 1  MPASCVIPDCDLKYTHSDDVSFHKFPLKSPELLKQWIQFTG---RDESWHPTKWSA-LCS 56

Query: 60 KHFIEPDFVETPLRRRLKPTSVPSVFYMMQGK 91
          +HF+  DF     R+ L PT+VPSV   +  K
Sbjct: 57 RHFVASDFKGCAARKILLPTAVPSVRNAVAAK 88

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346468253|gb|AEO33971.1| hypothetical protein [Amblyomma maculatum]

 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 6/104 (5%)

Query: 5   CCVPTCKLMRNNSEKLSYHEIPSKEPLRTNWIKQIGILTGNKFWQPTSESAVVCSKHFIE 64
           CCVP C+  R     L++H+IPS EP RT W+    +L+ N   +  +E  +VC +HF  
Sbjct: 4   CCVPGCRNSRERIPGLTFHQIPSSEPSRTQWMD---VLSRNGV-KVFTEWTLVCGEHFTH 59

Query: 65  PDFVETPLRRRLKPTSVPSVFYMMQGKPYFVPSRRRKYESPTTP 108
            D+  T  +  L P++VPS+F + Q K    P +R +   P  P
Sbjct: 60  EDYKMTARKNFLLPSAVPSIFTLRQCK--NAPRKRGRKPKPKAP 101

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241700819|ref|XP_002411899.1| conserved hypothetical protein [Ixodes scapularis] gi|215504839|gb|EEC14333.1| conserved hypothetical protein [Ixodes scapularis]

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 53/105 (50%), Gaps = 3/105 (2%)

Query: 5   CCVPTCKLMRNNSEKLSYHEIPSKEPLRTNWIKQIGILT-GNKFWQPTSESAVVCSKHFI 63
           CCVP CK    +  ++++HE P  E +R +WI+ I  L  G + W P   S V CS HF 
Sbjct: 4   CCVPLCKSSHRSPGRVAFHEFPVTE-VRNDWIRNISCLAAGPEPWAPNDRSKV-CSLHFK 61

Query: 64  EPDFVETPLRRRLKPTSVPSVFYMMQGKPYFVPSRRRKYESPTTP 108
             D+ E    RRLKP +VP+VF      P     +     +P TP
Sbjct: 62  PEDYREGLKLRRLKPDAVPTVFSDRPAFPRPAAKKDGPKRAPETP 106

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427786543|gb|JAA58723.1| Hypothetical protein [Rhipicephalus pulchellus]

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 79/169 (46%), Gaps = 23/169 (13%)

Query: 4   SCCVPTC-----KLMRNNSEKLSYHEIPSKEPLRTNWIKQIGILTGNK-FWQPTSESAVV 57
           +CCVP C     K   +    +S+HE P  + +R  WIK I     +K  WQP  E+A +
Sbjct: 2   TCCVPFCSSNAGKSKVDGERSVSFHEFPVTD-IRDAWIKAISREGPDKTLWQP-HETAKI 59

Query: 58  CSKHFIEPDFVET-PLRRRLKPTSVPSVF-----YMMQG------KPYFVPSRRRKYESP 105
           CS HF   D+ E    RRRLKP +VPS+F     YM +       K   +P RR     P
Sbjct: 60  CSIHFKLEDYKEGMKGRRRLKPNAVPSIFPGYPAYMQRSAENIRRKARTLPQRRLSEAFP 119

Query: 106 TTPNLFPNSQHHEIVNNEGNETRDIIDNSNVIENSKYDAFLQASFADKK 154
           T     P S+   + + +  + +  ++ ++    SK  A   A+ A KK
Sbjct: 120 TLATHPPRSKKRLLYDGQDGK-KATVETASTTSTSK--AVDSANIAAKK 165

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427787159|gb|JAA59031.1| Hypothetical protein [Rhipicephalus pulchellus]

 Score = 62.0 bits (149), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 4/83 (4%)

Query: 5  CCVPTCKLMRNNSEKLSYHEIPSKEPLRTNWIKQIGILTGNKFWQPTSESAVVCSKHFIE 64
          CC+P C+  R     L++H+IPS EP R +W+    +LT N   +  +E  +VC +HF  
Sbjct: 4  CCIPGCRNSRERIPGLTFHQIPSSEPWRASWMD---VLTKNGV-KAFTEWTLVCGEHFTH 59

Query: 65 PDFVETPLRRRLKPTSVPSVFYM 87
           D+  T  +  L P++VPSVF +
Sbjct: 60 EDYKMTARKNFLLPSAVPSVFTI 82

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170066772|ref|XP_001868218.1| zinc finger protein 358 [Culex quinquefasciatus] gi|167862961|gb|EDS26344.1| zinc finger protein 358 [Culex quinquefasciatus]

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 60/112 (53%), Gaps = 8/112 (7%)

Query: 1   MPPSCCVPTCKLMRNNSEKLSYHEIPSKEP-LRTNWIKQIGILTGNKFWQPTSESAVVCS 59
           MP SC VP C+L   +SE +SYH+ P K+P L + W+K  G    +  W P+  SA +CS
Sbjct: 1   MPSSCSVPDCELKYAHSEDVSYHKFPLKKPELLSEWVKFTG---RDPAWVPSRWSA-ICS 56

Query: 60  KHFIEPDFVETPLRRRLKPTSVPSVFYMMQGKPY--FVPSRRRKYESPTTPN 109
           +HF   DF +   R+ L   +VPSV  +    P   F+  +    E P TP+
Sbjct: 57  RHFKPSDFKDCIYRKNLTINAVPSV-RVRHHTPISEFIAGKCDVDEEPKTPH 107

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241695299|ref|XP_002413044.1| hypothetical protein IscW_ISCW012574 [Ixodes scapularis] gi|215506858|gb|EEC16352.1| hypothetical protein IscW_ISCW012574 [Ixodes scapularis]

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 6/97 (6%)

Query: 5   CCVPTCKLMRNNSEKLSYHEIPSKEPLRTNWIKQIGILTGNKFWQPTSESAVVCSKHFIE 64
           CC+P C+  R     L++H+IPS EP R  W+     + G +  Q  +E  +VC +HF  
Sbjct: 4   CCIPGCRNSRERIPGLTFHQIPSGEPWRALWLD----VLGKQGVQLFTEWTLVCGEHFTH 59

Query: 65  PDFVETPLRRRLKPTSVPSVFYMMQGKPYFVPSRRRK 101
            D+  T  +  L P+++PSVF        +VP +R +
Sbjct: 60  EDYKMTARKNFLLPSAIPSVFKETTSS--YVPKKRGR 94

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241286592|ref|XP_002407001.1| conserved hypothetical protein [Ixodes scapularis] gi|215496977|gb|EEC06617.1| conserved hypothetical protein, partial [Ixodes scapularis]

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 50/94 (53%), Gaps = 9/94 (9%)

Query: 5  CCVPTCKLMRNNSE--KLSYHEIPSKEPLRTNWIKQIGILT-GNKFWQPTSESAVVCSKH 61
          CCVP CK    N +   LS+HE P    +R  WI+ I      N  WQP   S V CS H
Sbjct: 4  CCVPLCKSEYKNKKDGGLSFHEFPVTH-VRDQWIRAISRKGPDNALWQPNGRSKV-CSLH 61

Query: 62 FIEPDFVET-PLRRRLKPTSVPSVFYMMQGKPYF 94
          F + D+ E    RR LKPT+VP++F    G P++
Sbjct: 62 FKDDDYKECNKFRRLLKPTAVPTIF---PGYPWY 92

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241802319|ref|XP_002414529.1| conserved hypothetical protein [Ixodes scapularis] gi|215508740|gb|EEC18194.1| conserved hypothetical protein [Ixodes scapularis]

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 47/89 (52%), Gaps = 9/89 (10%)

Query: 4  SCCVPTCKL-MRNNS--EKLSYHEIPSKEPLRTNWIKQIGILTGNKFWQPTSESAVVCSK 60
          SCC+  C   +R  S    LSYHEIPS   LR  W+  I      + WQP+  S  VCS 
Sbjct: 2  SCCIRRCGTTVRRPSPNGTLSYHEIPSDLELRARWLAVI----NREGWQPSCYSK-VCSL 56

Query: 61 HFIEPDFVETPLRRRLKPTSVPSVFYMMQ 89
          HF   DFVE   RRRLK   VPSVF   Q
Sbjct: 57 HFEASDFVEGK-RRRLKKGVVPSVFLGNQ 84

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
UNIPROTKB|F2Z371	102	THAP9 "THAP domain-containing	0.488	0.862	0.347	2.9e-09
UNIPROTKB|B4E146	160	THAP6 "cDNA FLJ52043, highly s	0.583	0.656	0.310	5.9e-09
UNIPROTKB|D6RCT5	102	THAP9 "THAP domain-containing	0.461	0.813	0.348	5.9e-09
UNIPROTKB|D6REM3	109	THAP9 "THAP domain-containing	0.461	0.761	0.348	5.9e-09
UNIPROTKB|Q8TBB0	222	THAP6 "THAP domain-containing	0.583	0.472	0.310	7.3e-09
UNIPROTKB|F1PQC2	887	THAP9 "Uncharacterized protein	0.655	0.133	0.318	1.4e-08
UNIPROTKB|J9P5J1	902	THAP9 "Uncharacterized protein	0.655	0.130	0.318	1.4e-08
UNIPROTKB|F1MY07	903	THAP9 "Uncharacterized protein	0.6	0.119	0.310	2.3e-08
UNIPROTKB|Q9H5L6	903	THAP9 "DNA transposase THAP9"	0.661	0.131	0.305	3.8e-08
UNIPROTKB|F1RYW3	222	THAP6 "Uncharacterized protein	0.711	0.576	0.277	3.8e-08

UNIPROTKB|F2Z371 THAP9 "THAP domain-containing protein 9" [Homo sapiens (taxid:9606)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 33/95 (34%), Positives = 48/95 (50%)

Query:     1 MPPSCCVPTCKL---MRNNSEKLSYHEIPSKEPLRTNWIKQIGILT--GNKFWQPTSESA 55
             M  SC    C     + +    LS+H+ P+    R+ WI+ +  +     K W P    A
Sbjct:     1 MTRSCSAVGCSTRDTVLSRERGLSFHQFPTDTIQRSKWIRAVNRVDPRSKKIWIP-GPGA 59

Query:    56 VVCSKHFIEPDFVETPLRRRLKPTSVPSV-FYMMQ 89
             ++CSKHF E DF    +RR+LK  +VPSV  Y M+
Sbjct:    60 ILCSKHFQESDFESYGIRRKLKKGAVPSVSLYKMR 94

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|B4E146 THAP6 "cDNA FLJ52043, highly similar to THAP domain-containing protein 6" [Homo sapiens (taxid:9606)]

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 37/119 (31%), Positives = 59/119 (49%)

Query:     4 SCCVPTCKLMRNNSEKLSYHEIPSKEPLRTNWIKQIGILTGNK--FWQPTSESAVVCSKH 61
             S C+P  KL     + L++H  P+ E ++  W+  +  L  N    W+P  +  V+CS+H
Sbjct:    12 SRCLPNSKL-----KGLTFHVFPTDENIKRKWVLAMKRLDVNAAGIWEP-KKGDVLCSRH 65

Query:    62 FIEPDFVETPLRRRLKPTSVPSVF---YMMQGKPYFVPSRRRKYESPTTPNLFPNSQHH 117
             F + DF  +    +LKP  +PS+F   Y +QGK   +  R+  +   T P    N  HH
Sbjct:    66 FKKTDFDRSAPNIKLKPGVIPSIFDSPYHLQGKREKLHCRKN-FTLKTVPAT--NYNHH 121

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|D6RCT5 THAP9 "THAP domain-containing protein 9" [Homo sapiens (taxid:9606)]

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 31/89 (34%), Positives = 45/89 (50%)

Query:     1 MPPSCCVPTCKL---MRNNSEKLSYHEIPSKEPLRTNWIKQIGILT--GNKFWQPTSESA 55
             M  SC    C     + +    LS+H+ P+    R+ WI+ +  +     K W P    A
Sbjct:     1 MTRSCSAVGCSTRDTVLSRERGLSFHQFPTDTIQRSKWIRAVNRVDPRSKKIWIP-GPGA 59

Query:    56 VVCSKHFIEPDFVETPLRRRLKPTSVPSV 84
             ++CSKHF E DF    +RR+LK  +VPSV
Sbjct:    60 ILCSKHFQESDFESYGIRRKLKKGAVPSV 88

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|D6REM3 THAP9 "THAP domain-containing protein 9" [Homo sapiens (taxid:9606)]

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 31/89 (34%), Positives = 45/89 (50%)

Query:     1 MPPSCCVPTCKL---MRNNSEKLSYHEIPSKEPLRTNWIKQIGILT--GNKFWQPTSESA 55
             M  SC    C     + +    LS+H+ P+    R+ WI+ +  +     K W P    A
Sbjct:     1 MTRSCSAVGCSTRDTVLSRERGLSFHQFPTDTIQRSKWIRAVNRVDPRSKKIWIP-GPGA 59

Query:    56 VVCSKHFIEPDFVETPLRRRLKPTSVPSV 84
             ++CSKHF E DF    +RR+LK  +VPSV
Sbjct:    60 ILCSKHFQESDFESYGIRRKLKKGAVPSV 88

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q8TBB0 THAP6 "THAP domain-containing protein 6" [Homo sapiens (taxid:9606)]

 Score = 133 (51.9 bits), Expect = 7.3e-09, P = 7.3e-09
 Identities = 37/119 (31%), Positives = 59/119 (49%)

Query:     4 SCCVPTCKLMRNNSEKLSYHEIPSKEPLRTNWIKQIGILTGNK--FWQPTSESAVVCSKH 61
             S C+P  KL     + L++H  P+ E ++  W+  +  L  N    W+P  +  V+CS+H
Sbjct:    12 SRCLPNSKL-----KGLTFHVFPTDENIKRKWVLAMKRLDVNAAGIWEP-KKGDVLCSRH 65

Query:    62 FIEPDFVETPLRRRLKPTSVPSVF---YMMQGKPYFVPSRRRKYESPTTPNLFPNSQHH 117
             F + DF  +    +LKP  +PS+F   Y +QGK   +  R+  +   T P    N  HH
Sbjct:    66 FKKTDFDRSAPNIKLKPGVIPSIFDSPYHLQGKREKLHCRKN-FTLKTVPAT--NYNHH 121

GO:0003677 "DNA binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=IDA

UNIPROTKB|F1PQC2 THAP9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 142 (55.0 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 42/132 (31%), Positives = 65/132 (49%)

Query:     1 MPPSCCVPTCKL---MRNNSEKLSYHEIPSKEPLRTNWIKQIGILT--GNKFWQPTSESA 55
             M  SC    C     + +    LS+H+ P+    R+ WI+ +  +     K W P    A
Sbjct:     1 MTRSCSAVGCSTRDTVLSRERGLSFHQFPTDTIQRSKWIRAVNRVDPRSKKIWIP-GPGA 59

Query:    56 VVCSKHFIEPDFVETPLRRRLKPTSVPSV--FYMMQGKPYFVPSRRRKYESPTTPNLFPN 113
             ++CSKHF E DF    +RR+LK  +VPSV  + ++QG      +R++  + P  P+   N
Sbjct:    60 ILCSKHFQESDFESYGIRRKLKKGAVPSVSLYKVLQGVHLKGKARQKILKQPL-PD---N 115

Query:   114 SQHHEIVNNEGN 125
             SQ  EI   + N
Sbjct:   116 SQ--EIATEDHN 125

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|J9P5J1 THAP9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 142 (55.0 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 42/132 (31%), Positives = 65/132 (49%)

Query:     1 MPPSCCVPTCKL---MRNNSEKLSYHEIPSKEPLRTNWIKQIGILT--GNKFWQPTSESA 55
             M  SC    C     + +    LS+H+ P+    R+ WI+ +  +     K W P    A
Sbjct:     1 MTRSCSAVGCSTRDTVLSRERGLSFHQFPTDTIQRSKWIRAVNRVDPRSKKIWIP-GPGA 59

Query:    56 VVCSKHFIEPDFVETPLRRRLKPTSVPSV--FYMMQGKPYFVPSRRRKYESPTTPNLFPN 113
             ++CSKHF E DF    +RR+LK  +VPSV  + ++QG      +R++  + P  P+   N
Sbjct:    60 ILCSKHFQESDFESYGIRRKLKKGAVPSVSLYKVLQGVHLKGKARQKILKQPL-PD---N 115

Query:   114 SQHHEIVNNEGN 125
             SQ  EI   + N
Sbjct:   116 SQ--EIATEDHN 125

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1MY07 THAP9 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 140 (54.3 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 36/116 (31%), Positives = 57/116 (49%)

Query:     1 MPPSCCVPTCKL---MRNNSEKLSYHEIPSKEPLRTNWIKQIGILT--GNKFWQPTSESA 55
             M  SC    C     + +    LS+H+ P+    R+ WI+ +  +     K W P    A
Sbjct:     1 MTRSCSAVGCSTRDTVLSRERGLSFHQFPTDTIQRSKWIRAVNRMDPRSKKIWIP-GPGA 59

Query:    56 VVCSKHFIEPDFVETPLRRRLKPTSVPSV--FYMMQGKPYFVPSRRRKYESPTTPN 109
             ++CSKHF E DF    +RR+LK  +VPSV  + ++QG      +R++  + P   N
Sbjct:    60 MLCSKHFQESDFESYGIRRKLKKGAVPSVSLYKVLQGVHLKGKARQKILKQPLPDN 115

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q9H5L6 THAP9 "DNA transposase THAP9" [Homo sapiens (taxid:9606)]

 Score = 138 (53.6 bits), Expect = 3.8e-08, P = 3.8e-08
 Identities = 40/131 (30%), Positives = 60/131 (45%)

Query:     1 MPPSCCVPTCKL---MRNNSEKLSYHEIPSKEPLRTNWIKQIGILT--GNKFWQPTSESA 55
             M  SC    C     + +    LS+H+ P+    R+ WI+ +  +     K W P    A
Sbjct:     1 MTRSCSAVGCSTRDTVLSRERGLSFHQFPTDTIQRSKWIRAVNRVDPRSKKIWIP-GPGA 59

Query:    56 VVCSKHFIEPDFVETPLRRRLKPTSVPSV-FYMMQGKPYFVPSRRRKYESPTTPNLFPNS 114
             ++CSKHF E DF    +RR+LK  +VPSV  Y +    +     R+K      P+   NS
Sbjct:    60 ILCSKHFQESDFESYGIRRKLKKGAVPSVSLYKIPQGVHLKGKARQKILKQPLPD---NS 116

Query:   115 QHHEIVNNEGN 125
             Q  E+   + N
Sbjct:   117 Q--EVATEDHN 125

GO:0016740 "transferase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0004803 "transposase activity" evidence=IDA

GO:0006313 "transposition, DNA-mediated" evidence=IDA

GO:0015074 "DNA integration" evidence=IDA

GO:0006310 "DNA recombination" evidence=IDA

UNIPROTKB|F1RYW3 THAP6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 127 (49.8 bits), Expect = 3.8e-08, P = 3.8e-08
 Identities = 41/148 (27%), Positives = 72/148 (48%)

Query:     4 SCCVPTCKLMRNNSEKLSYHEIPSKEPLRTNWIKQIGILTGNK--FWQPTSESAVVCSKH 61
             S C+P  KL     + L++H  P+ E ++  W+  +  L  N    W+P  +  V+CS+H
Sbjct:    12 SRCLPNSKL-----KGLTFHVFPTDEKVKRKWVLAMKRLDVNAAGMWEP-KKGDVLCSRH 65

Query:    62 FIEPDFVETPLRRRLKPTSVPSVFYMMQGKPYFVPSRRRKYESPT--TPNLFPNSQH-HE 118
             F + DF  T    +LKP  +PS+F      P  +  +R K       T    P + H H+
Sbjct:    66 FKKTDFDRTTPNIKLKPGVIPSIF----DSPSHLQGKREKLHCRKNFTLKALPVTNHNHQ 121

Query:   119 IVN----NEGNETRDIIDNS-NVIENSK 141
             +V      E  +++ I ++S +V+++ K
Sbjct:   122 LVGASSCTEEFQSQFIFEHSYSVMDSPK 149

GO:0015630 "microtubule cytoskeleton" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	180
pfam05485	84	pfam05485, THAP, THAP domain	6e-17
smart00980	80	smart00980, THAP, The THAP domain is a putative DN	2e-15

>gnl|CDD|218604 pfam05485, THAP, THAP domain

 Score = 71.3 bits (175), Expect = 6e-17
 Identities = 31/82 (37%), Positives = 40/82 (48%), Gaps = 5/82 (6%)

Query: 4  SCCVPTCKLMRNNSEKLSYHEIPSKEPLRTNWIKQIGILTGNKFWQPTSESAVVCSKHFI 63
           CCVP C         +S+H  P    L   W+K +G       W+PT  S  +CSKHF 
Sbjct: 2  KCCVPGCN-RSKRGPGVSFHRFPKDPELLRKWLKNLGR---EDDWKPTKNS-RICSKHFE 56

Query: 64 EPDFVETPLRRRLKPTSVPSVF 85
             F     RRRLKP +VP++F
Sbjct: 57 PDCFDNRGGRRRLKPGAVPTLF 78

The THAP domain is a putative DNA-binding domain (DBD) and probably also binds a zinc ion. It features the conserved C2CH architecture (consensus sequence: Cys - 2-4 residues - Cys - 35-50 residues - Cys - 2 residues - His). Other universal features include the location of the domain at the N-termini of proteins, its size of about 90 residues, a C-terminal AVPTIF box and several other conserved residues. Orthologues of the human THAP domain have been identified in other vertebrates and probably worms and flies, but not in other eukaryotes or any prokaryotes. Length = 84

>gnl|CDD|214951 smart00980, THAP, The THAP domain is a putative DNA-binding domain (DBD) and probably also binds a zinc ion

 Score = 67.1 bits (164), Expect = 2e-15
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 5/83 (6%)

Query: 4  SCCVPTCKLMRNNSEKLSYHEIPSKEP-LRTNWIKQIGILTGNKFWQPTSESAVVCSKHF 62
           CCVP C      +  LS+   P ++P LR  W++ +G L  +   +P   S  +CS+HF
Sbjct: 1  KCCVPGCGNRSKKNPGLSFFRFPKEDPELRKKWLENLG-LPDDPNRKPKKRS-RICSRHF 58

Query: 63 IEPDFVETPLRRRLKPTSVPSVF 85
             DF  +   RRLKP +VP++F
Sbjct: 59 EPDDFDNS--GRRLKPGAVPTLF 79

It features the conserved C2CH architecture (consensus sequence: Cys - 2-4 residues - Cys - 35-50 residues - Cys - 2 residues - His). Other universal features include the location of the domain at the N-termini of proteins, its size of about 90 residues, a C-terminal AVPTIF box and several other conserved residues. Orthologues of the human THAP domain have been identified in other vertebrates and probably worms and flies, but not in other eukaryotes or any prokaryotes. Length = 80

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	180
PF05485	84	THAP: THAP domain; InterPro: IPR006612 Zinc finger	99.89
smart00692	59	DM3 Zinc finger domain in CG10631, C. elegans LIN-	99.72

>PF05485 THAP: THAP domain; InterPro: IPR006612 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.89  E-value=1.2e-23  Score=148.63  Aligned_cols=82  Identities=35%  Similarity=0.791  Sum_probs=60.0

Q ss_pred             cceeeccCCCCccCCCCeEEEecCCChhHHHHHHHHhccccCCcccCCCCCceeeccCCccCCCcccCCCCcccCCCcee
Q psy5284           3 PSCCVPTCKLMRNNSEKLSYHEIPSKEPLRTNWIKQIGILTGNKFWQPTSESAVVCSKHFIEPDFVETPLRRRLKPTSVP   82 (180)
Q Consensus         3 ~~C~V~gC~n~~~k~~~isff~FPkd~~~r~~Wi~~~~~~~~~~~~~p~~~~~~VCs~HF~~~~f~~~~~~~~Lk~~AVP   82 (180)
                      ++|+|+||.+......+++||+||+|++++++|++++++..   .+.+... .+||+.||++++|.....+++|+++|||
T Consensus         1 r~C~v~~C~~~~~~~~~~~f~~fP~d~~~~~~W~~~~~~~~---~~~~~~~-~~ICs~HF~~~~~~~~~~~~~L~~~AVP   76 (84)
T PF05485_consen    1 RKCCVPGCSNSSSRKPGVSFFRFPKDPERRKKWLKACGRED---WWKPTKN-SRICSRHFEPDDFRRSSKRRRLKPDAVP   76 (84)
T ss_dssp             --ETSSSTTTSTCCTTSS-EEE--SSHHHHHHHHHHHTSTC---G-GTSTT-SEEEGGGSTGGGBSTTTSSSSB-TT---
T ss_pred             CEEEeccCcCCCeeCCCeEEEECCCCHHHHHHHHHHhcccc---cccccCC-ccchhhhCchhhcccccCCCcCCCCCCC
Confidence            57999999666666789999999999999999999999953   2345554 8999999999999766889999999999


Q ss_pred             ecccCC
Q psy5284          83 SVFYMM   88 (180)
Q Consensus        83 tlf~~~   88 (180)
                      |||++.
T Consensus        77 tl~~~~   82 (84)
T PF05485_consen   77 TLFLPP   82 (84)
T ss_dssp             CCC---
T ss_pred             cCcCCC
Confidence            999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. The THAP domain is an ~90-residue domain restricted to animals, which is shared between the THAP family of cellular DNA-binding proteins, and transposases from mobile genomic parasites. The defined THAP domain includes: a C2CH signature (consensus: C-x(2,4)-C-x(35,50)-C-x(2)-H); three additional key residues that are strictly conserved in all THAP domains that have been found to date (THAP1 amino acids P26, W36, F58); a C-terminal AVPTIF box; and several other conserved amino acid positions with distinct physicochemical properties (e.g. hydrophobic and polar). The THAP domain can be found in one or more copies and can be associated with other domains, such as the C2H2-type zinc finger. The THAP domain is supposed to be a DNA-binding domain (DBD) [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding; PDB: 3KDE_C 2D8R_A 2JM3_A 2KO0_A 2JTG_A 2L1G_A.

>smart00692 DM3 Zinc finger domain in CG10631, C

Probab=99.72  E-value=2.5e-18  Score=114.96  Aligned_cols=59  Identities=27%  Similarity=0.456  Sum_probs=49.6

Q ss_pred             EEecCCChhHHHHHHHHhccccCCcccCCCCCceeeccCCccCCCcccCCCCcccCCCceeecccC
Q psy5284          22 YHEIPSKEPLRTNWIKQIGILTGNKFWQPTSESAVVCSKHFIEPDFVETPLRRRLKPTSVPSVFYM   87 (180)
Q Consensus        22 ff~FPkd~~~r~~Wi~~~~~~~~~~~~~p~~~~~~VCs~HF~~~~f~~~~~~~~Lk~~AVPtlf~~   87 (180)
                      ||+||+|++++++|+++|+...   .+.+.. +.+|||+||+++||.   ++++|+++||||||++
T Consensus         1 ff~FP~d~~~~~~W~~~~~~~~---~~~~~~-~~~vCs~HF~~~~~~---~~~~L~~~AvPt~~l~   59 (59)
T smart00692        1 LFRFPKDPELLKKWEHNLRLSP---DEKKLK-NSRICSRHFEPECFG---KRRRLKPGAVPTLELG   59 (59)
T ss_pred             CCCCccCHHHHHHHHHHhCCCc---cccCCC-CCCcchhhCCHhHhC---CccccCCCCCccccCC
Confidence            6999999999999999999843   333444 489999999999995   4568999999999973

elegans LIN-15B and human P52rIPK.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	180
2d8r_A	99	Solution Structure Of The Thap Domain Of The Human		5e-05

>pdb|2D8R|A Chain A, Solution Structure Of The Thap Domain Of The Human Thap Domain-Containing Protein 2 Length = 99

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 1  MPPSCCVPTCKLMRNNSEKLSYHEIPSKEPLRTNWIKQIGILTGNKFWQPTSESAVVCSK 60
          MP +C    C    N    +S+H  P     R  W++    L   K + P  +   +CSK
Sbjct: 8  MPTNCAAAGCATTYNKHINISFHRFPLDPKRRKEWVR----LVRRKNFVP-GKHTFLCSK 62
Query: 61 HFIEPDFVETPLRRRLKPTSVPSVF 85
          HF    F  T   RRLK  +VP++F
Sbjct: 63 HFEASCFDLTGQTRRLKMDAVPTIF 87

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	180
2jtg_A	87	THAP domain-containing protein 1; zinc finger, CCC	3e-21
2d8r_A	99	THAP domain-containing protein 2; NPPSFA, national	8e-21
2jm3_A	91	Hypothetical protein; zinc finger, domain, metal b	7e-10
3kde_C	77	Transposable element P transposase; THAP domain, D	5e-05

>2jtg_A THAP domain-containing protein 1; zinc finger, CCCH, DNA-binding, metal-binding, zinc- finger, metal binding protein; NMR {Homo sapiens} PDB: 2ko0_A 2l1g_A* Length = 87

 Score = 82.2 bits (203), Expect = 3e-21
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 1  MPPSCCVPTCKLMRNNSEKLSYHEIPSKEP-LRTNWIKQIGILTGNKFWQPTSESAVVCS 59
          M  SC    CK   +  + +S+H+ P   P L   W   +      K ++PT  S  +CS
Sbjct: 1  MVQSCSAYGCKNRYDKDKPVSFHKFPLTRPSLCKEWEAAVR----RKNFKPTKYS-SICS 55

Query: 60 KHFIEPDFVETPLRRRLKPTSVPSVF 85
          +HF    F      + LK  +VP++F
Sbjct: 56 EHFTPDCFKRECNNKLLKENAVPTIF 81

>2d8r_A THAP domain-containing protein 2; NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.16 Length = 99

 Score = 81.2 bits (200), Expect = 8e-21
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 1  MPPSCCVPTCKLMRNNSEKLSYHEIPSKEPLRTNWIKQIGILTGNKFWQPTSESAVVCSK 60
          MP +C    C    N    +S+H  P     R  W++ +      K + P   +  +CSK
Sbjct: 8  MPTNCAAAGCATTYNKHINISFHRFPLDPKRRKEWVRLV----RRKNFVPGKHT-FLCSK 62

Query: 61 HFIEPDFVETPLRRRLKPTSVPSVF 85
          HF    F  T   RRLK  +VP++F
Sbjct: 63 HFEASCFDLTGQTRRLKMDAVPTIF 87

>2jm3_A Hypothetical protein; zinc finger, domain, metal binding protein; NMR {Caenorhabditis elegans} Length = 91

 Score = 52.5 bits (125), Expect = 7e-10
 Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 9/91 (9%)

Query: 1  MPPSCCVPTCK---LMRNNSEKLSYHEIPSKEP-LRTNWIKQIGILTGNKFWQPTSESAV 56
          MP +C  P CK     R   +   ++ IP +   LR  W+  I    G       S    
Sbjct: 3  MPTTCGFPNCKFRSRYRGLEDNRHFYRIPKRPLILRQRWLTAI----GRTEETVVS-QLR 57

Query: 57 VCSKHFIEPDFVETPLRRRLKPTSVPSVFYM 87
          +CS HF   +  E  +              +
Sbjct: 58 ICSAHFEGGEKKEGDIPVPDPTVDKQIKIEL 88

>3kde_C Transposable element P transposase; THAP domain, DNA-binding domain, zinc-finger, beta-alpha-BET element transposase, DNA integration; HET: BRU; 1.74A {Drosophila melanogaster} Length = 77

 Score = 39.0 bits (90), Expect = 5e-05
 Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 14/80 (17%)

Query: 10 CKLMRNNSEKLSYHEIPSKEPLRTNWIKQIGILTGNKFWQPTSESAVVCSKHFIEPDFVE 69
          CK        +    +P     R  W + +G            E++ +C  HF +  +  
Sbjct: 4  CKFCCKAVTGVKLIHVPKCAIKRKLWEQSLGC--------SLGENSQICDTHFNDSQWKA 55

Query: 70 TPL------RRRLKPTSVPS 83
           P       RRRL   +VPS
Sbjct: 56 APAKGQTFKRRRLNADAVPS 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	180
2jtg_A	87	THAP domain-containing protein 1; zinc finger, CCC	99.95
2d8r_A	99	THAP domain-containing protein 2; NPPSFA, national	99.94
2lau_A	81	THAP domain-containing protein 11; zinc finger, pr	99.91
2jm3_A	91	Hypothetical protein; zinc finger, domain, metal b	99.84
3kde_C	77	Transposable element P transposase; THAP domain, D	99.6

>2jtg_A THAP domain-containing protein 1; zinc finger, CCCH, DNA-binding, metal-binding, zinc- finger, metal binding protein; NMR {Homo sapiens} PDB: 2ko0_A 2l1g_A*

Probab=99.95  E-value=2.4e-28  Score=174.08  Aligned_cols=83  Identities=28%  Similarity=0.553  Sum_probs=75.5

Q ss_pred             CCcceeeccCCCCccCCCCeEEEecC-CChhHHHHHHHHhccccCCcccCCCCCceeeccCCccCCCcccCCCCcccCCC
Q psy5284           1 MPPSCCVPTCKLMRNNSEKLSYHEIP-SKEPLRTNWIKQIGILTGNKFWQPTSESAVVCSKHFIEPDFVETPLRRRLKPT   79 (180)
Q Consensus         1 M~~~C~V~gC~n~~~k~~~isff~FP-kd~~~r~~Wi~~~~~~~~~~~~~p~~~~~~VCs~HF~~~~f~~~~~~~~Lk~~   79 (180)
                      ||+.|+|+||.|++.++.+++||+|| +|++++++|+++|++    +.|.|.+. ++|||+||+++||.....+++|+++
T Consensus         1 M~~~C~v~~C~n~~~~~~~~~f~~FP~kd~~~~~~W~~~~~~----~~~~~~~~-~~iCs~HF~~~~f~~~~~~~~Lk~~   75 (87)
T 2jtg_A            1 MVQSCSAYGCKNRYDKDKPVSFHKFPLTRPSLCKEWEAAVRR----KNFKPTKY-SSICSEHFTPDCFKRECNNKLLKEN   75 (87)
T ss_dssp             CCCCCSSTTCCCCCCSSSCCCEEECCSSCCTTHHHHHHHHCS----SCCCTTTT-SEEEGGGSCGGGGCCCCSSCCCCTT
T ss_pred             CCCccEeCCCCCCCcCCCCeEEEECCCCChHHHHHHHHHhCc----ccCccCCC-CEEccccCcHhHhhccCCcCeeCCC
Confidence            99999999999988767789999999 899999999999998    36777764 8999999999999987778999999


Q ss_pred             ceeecccCC
Q psy5284          80 SVPSVFYMM   88 (180)
Q Consensus        80 AVPtlf~~~   88 (180)
                      ||||||...
T Consensus        76 AVPtif~~~   84 (87)
T 2jtg_A           76 AVPTIFLEL   84 (87)
T ss_dssp             CCCGGGCCC
T ss_pred             CCCcCcCCC
Confidence            999999864

>2d8r_A THAP domain-containing protein 2; NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.16

Probab=99.94  E-value=1.6e-27  Score=174.04  Aligned_cols=84  Identities=31%  Similarity=0.597  Sum_probs=75.9

Q ss_pred             CCcceeeccCCCCccCCCCeEEEecCCChhHHHHHHHHhccccCCcccCCCCCceeeccCCccCCCcccCCCCcccCCCc
Q psy5284           1 MPPSCCVPTCKLMRNNSEKLSYHEIPSKEPLRTNWIKQIGILTGNKFWQPTSESAVVCSKHFIEPDFVETPLRRRLKPTS   80 (180)
Q Consensus         1 M~~~C~V~gC~n~~~k~~~isff~FPkd~~~r~~Wi~~~~~~~~~~~~~p~~~~~~VCs~HF~~~~f~~~~~~~~Lk~~A   80 (180)
                      |++.|+|+||.|++.+..+++||+||+|++++++|+++|++    +.|.|.+. ++|||+||+++||.....+++|+++|
T Consensus         8 M~~~C~v~gC~n~~~~~~~~~ff~FPkd~~~~~~W~~~~~r----~~~~~~~~-~~ICs~HF~~~~f~~~~~~~~Lk~~A   82 (99)
T 2d8r_A            8 MPTNCAAAGCATTYNKHINISFHRFPLDPKRRKEWVRLVRR----KNFVPGKH-TFLCSKHFEASCFDLTGQTRRLKMDA   82 (99)
T ss_dssp             CCCCCCSSSCCCSCCSSCCCCCEECCSSHHHHHHHHHHTTC----TTCCCSSS-CEECTTSSCSTTBSCTTSSCCBCTTC
T ss_pred             CCCeeEeCCCCCCCcCCCCeEEEECCCCHHHHHHHHHHhCc----cccCCCCc-ceeeeeecchhhhhhccCccccCCCc
Confidence            99999999999988767789999999999999999999999    36777764 89999999999998777889999999


Q ss_pred             eeecccCCC
Q psy5284          81 VPSVFYMMQ   89 (180)
Q Consensus        81 VPtlf~~~~   89 (180)
                      |||||...+
T Consensus        83 VPtlf~~~~   91 (99)
T 2d8r_A           83 VPTIFDFCT   91 (99)
T ss_dssp             CCSCCCCCC
T ss_pred             CccCcCCcC
Confidence            999997653

>2lau_A THAP domain-containing protein 11; zinc finger, protein-DNA complex, DNA binding domain, transc factor, CCCH, transcription-DNA complex; NMR {Homo sapiens}

Probab=99.91  E-value=8.3e-25  Score=153.76  Aligned_cols=76  Identities=29%  Similarity=0.565  Sum_probs=65.3

Q ss_pred             CCcceeeccCCCCccCCCCeEEEecCCChhHHHHHHHHhccccC---CcccCCCCCceeeccCCccCCCcccCCCCcccC
Q psy5284           1 MPPSCCVPTCKLMRNNSEKLSYHEIPSKEPLRTNWIKQIGILTG---NKFWQPTSESAVVCSKHFIEPDFVETPLRRRLK   77 (180)
Q Consensus         1 M~~~C~V~gC~n~~~k~~~isff~FPkd~~~r~~Wi~~~~~~~~---~~~~~p~~~~~~VCs~HF~~~~f~~~~~~~~Lk   77 (180)
                      .|.+|+|+||.|++.++.+++||+||+|++++++|+++|++...   ...|.|++. ++|||+||+..        ++|+
T Consensus         3 pG~~C~v~gC~n~~~~~~~v~fh~FPkd~~~~~~Wl~~~~r~~~~~~~~~~~~~~~-~rvCS~HF~~~--------~~L~   73 (81)
T 2lau_A            3 PGFTCCVPGCYNNSHRDKALHFYTFPKDAELRRLWLKNVSRAGVSGCFSTFQPTTG-HRLCSVHFQGG--------RKTY   73 (81)
T ss_dssp             SCCSCCCSSSSSCTTSCCCSCEECCCSSHHHHHHHHHHHCCSTTSSCCCTTCTTSC-CCEEGGGSSSS--------SSBT
T ss_pred             CCCEEEeCCCcCCCCCCCCeEEEECCCCHHHHHHHHHHhCcccccccccccccCCC-CEehhhhCCCC--------CccC
Confidence            36799999999988777899999999999999999999998543   245778764 89999999743        4799


Q ss_pred             CCceeecc
Q psy5284          78 PTSVPSVF   85 (180)
Q Consensus        78 ~~AVPtlf   85 (180)
                      ++||||||
T Consensus        74 ~~aVPTiF   81 (81)
T 2lau_A           74 TVRVPTIF   81 (81)
T ss_dssp             TBCSCCCC
T ss_pred             CCCCCCcC
Confidence            99999998

>2jm3_A Hypothetical protein; zinc finger, domain, metal binding protein; NMR {Caenorhabditis elegans}

Probab=99.84  E-value=1.4e-21  Score=140.92  Aligned_cols=72  Identities=28%  Similarity=0.508  Sum_probs=60.6

Q ss_pred             CCcceeeccCCCCccC---CCCeEEEecCCCh-hHHHHHHHHhccccCCcccCCCCCceeeccCCccCCCcccCCCCccc
Q psy5284           1 MPPSCCVPTCKLMRNN---SEKLSYHEIPSKE-PLRTNWIKQIGILTGNKFWQPTSESAVVCSKHFIEPDFVETPLRRRL   76 (180)
Q Consensus         1 M~~~C~V~gC~n~~~k---~~~isff~FPkd~-~~r~~Wi~~~~~~~~~~~~~p~~~~~~VCs~HF~~~~f~~~~~~~~L   76 (180)
                      ||..|+|+||.|++..   ..+++||+||+++ +++++|+++|++.    .|.+... ++|||.||++++|..       
T Consensus         3 Mp~~C~V~gC~n~s~~~~~~~~~sFfrFPk~~~~~rk~Wl~ai~r~----~~~~~~~-~rICS~HF~~~~~~~-------   70 (91)
T 2jm3_A            3 MPTTCGFPNCKFRSRYRGLEDNRHFYRIPKRPLILRQRWLTAIGRT----EETVVSQ-LRICSAHFEGGEKKE-------   70 (91)
T ss_dssp             SCCCCCCTTCCSTTTSSSCCTTCCCBCCCCSSHHHHHHHHHHHTCC----GGGSSSS-CCBCGGGSTTSCCSS-------
T ss_pred             CCCeEEeCCCcCCcccccCCCCceEEeCCCCCHHHHHHHHHHhCCC----CCCCCCC-cEEechhcCCCCccc-------
Confidence            9999999999987643   5789999999987 9999999999993    5666664 899999999998754       


Q ss_pred             CCCceeeccc
Q psy5284          77 KPTSVPSVFY   86 (180)
Q Consensus        77 k~~AVPtlf~   86 (180)
                        ++||+-.+
T Consensus        71 --~~ip~~~p   78 (91)
T 2jm3_A           71 --GDIPVPDP   78 (91)
T ss_dssp             --SBCCCSCT
T ss_pred             --CcCCCCCc
Confidence              78877554

>3kde_C Transposable element P transposase; THAP domain, DNA-binding domain, zinc-finger, beta-alpha-BET element transposase, DNA integration; HET: BRU; 1.74A {Drosophila melanogaster}

Probab=99.60  E-value=4.6e-16  Score=107.99  Aligned_cols=58  Identities=24%  Similarity=0.462  Sum_probs=51.1

Q ss_pred             CCeEEEecCCChhHHHHHHHHhccccCCcccCCCCCceeeccCCccCCCcccC------CCCcccCCCceee
Q psy5284          18 EKLSYHEIPSKEPLRTNWIKQIGILTGNKFWQPTSESAVVCSKHFIEPDFVET------PLRRRLKPTSVPS   83 (180)
Q Consensus        18 ~~isff~FPkd~~~r~~Wi~~~~~~~~~~~~~p~~~~~~VCs~HF~~~~f~~~------~~~~~Lk~~AVPt   83 (180)
                      .|++||+||+|..+|++|.+.++..       ++. +++||+.||++++|...      .++++|++|||||
T Consensus        12 ~gvslfr~PK~~~~Rk~W~~~l~c~-------lt~-nSrIC~~HF~~Sd~~~~~~~~~~~krRrL~~~AiPt   75 (77)
T 3kde_C           12 TGVKLIHVPKCAIKRKLWEQSLGCS-------LGE-NSQICDTHFNDSQWKAAPAKGQTFKRRRLNADAVPS   75 (77)
T ss_dssp             CSSCEEECCSSHHHHHHHHHHHTSC-------CCT-TCEEEGGGSCGGGBCCC--CCCCCSSCCBCTTCCCC
T ss_pred             CCceEEECCCCHHHHHHHHHHcCCC-------CCC-cccHHHHhCCHHHheecccccccccceecCCCCCCC
Confidence            5799999999999999999999883       233 58999999999999865      3699999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	180
d2d8ra1	86	g.39.1.16 (A:8-93) THAP domain-containing protein	2e-20

>d2d8ra1 g.39.1.16 (A:8-93) THAP domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: THAP domain
domain: THAP domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.0 bits (194), Expect = 2e-20
 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 1  MPPSCCVPTCKLMRNNSEKLSYHEIPSKEPLRTNWIKQIGILTGNKFWQPTSESAVVCSK 60
          MP +C    C    N    +S+H  P     R  W++ +      K + P      +CSK
Sbjct: 1  MPTNCAAAGCATTYNKHINISFHRFPLDPKRRKEWVRLV----RRKNFVPGK-HTFLCSK 55

Query: 61 HFIEPDFVETPLRRRLKPTSVPSVF 85
          HF    F  T   RRLK  +VP++F
Sbjct: 56 HFEASCFDLTGQTRRLKMDAVPTIF 80

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	180
d2d8ra1	86	THAP domain-containing protein 2 {Human (Homo sapi	99.94

>d2d8ra1 g.39.1.16 (A:8-93) THAP domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: THAP domain
domain: THAP domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.9e-28  Score=170.19  Aligned_cols=82  Identities=30%  Similarity=0.594  Sum_probs=73.7

Q ss_pred             CCcceeeccCCCCccCCCCeEEEecCCChhHHHHHHHHhccccCCcccCCCCCceeeccCCccCCCcccCCCCcccCCCc
Q psy5284           1 MPPSCCVPTCKLMRNNSEKLSYHEIPSKEPLRTNWIKQIGILTGNKFWQPTSESAVVCSKHFIEPDFVETPLRRRLKPTS   80 (180)
Q Consensus         1 M~~~C~V~gC~n~~~k~~~isff~FPkd~~~r~~Wi~~~~~~~~~~~~~p~~~~~~VCs~HF~~~~f~~~~~~~~Lk~~A   80 (180)
                      ||++|+|+||.+++.++.+++||+||+|++++++|++++++.    .+.++.. .+|||+||+++||.....+++|+++|
T Consensus         1 M~~~C~v~~C~~~~~~~~~~~ff~fP~d~~~~~~W~~~~~~~----~~~~~~~-~~ICs~HF~~~~~~~~~~~~~L~~~A   75 (86)
T d2d8ra1           1 MPTNCAAAGCATTYNKHINISFHRFPLDPKRRKEWVRLVRRK----NFVPGKH-TFLCSKHFEASCFDLTGQTRRLKMDA   75 (86)
T ss_dssp             CCCCCCSSSCCCSCCSSCCCCCEECCSSHHHHHHHHHHTTCT----TCCCSSS-CEECTTSSCSTTBSCTTSSCCBCTTC
T ss_pred             CCCeeEcCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHhCCc----ccccCCc-cEEeCCcCChhhhcccCCCCEeCCCC
Confidence            999999999999887778899999999999999999999983    4566654 89999999999998877888999999


Q ss_pred             eeecccC
Q psy5284          81 VPSVFYM   87 (180)
Q Consensus        81 VPtlf~~   87 (180)
                      |||||.-
T Consensus        76 VPtiF~~   82 (86)
T d2d8ra1          76 VPTIFDF   82 (86)
T ss_dssp             CCSCCCC
T ss_pred             ccceeCC
Confidence            9999963