Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value Query 109
cd00834 406
cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier prot
3e-32 PRK07314 411
PRK07314, PRK07314, 3-oxoacyl-(acyl carrier protei
2e-29 TIGR03150 407
TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protei
1e-28 PRK06333 424
PRK06333, PRK06333, 3-oxoacyl-(acyl carrier protei
2e-23 COG0304 412
COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) sy
3e-23 PLN02836 437
PLN02836, PLN02836, 3-oxoacyl-[acyl-carrier-protei
4e-22 pfam00109 243
pfam00109, ketoacyl-synt, Beta-ketoacyl synthase,
1e-19 PTZ00050 421
PTZ00050, PTZ00050, 3-oxoacyl-acyl carrier protein
4e-17 PRK08439 406
PRK08439, PRK08439, 3-oxoacyl-(acyl carrier protei
6e-15 PRK07967 406
PRK07967, PRK07967, 3-oxoacyl-(acyl carrier protei
8e-14 cd00828 407
cd00828, elong_cond_enzymes, "elongating" condensi
2e-13 PRK09116 405
PRK09116, PRK09116, 3-oxoacyl-(acyl carrier protei
3e-13 cd00832 399
cd00832, CLF, Chain-length factor (CLF) is a facto
1e-12 PRK08722 414
PRK08722, PRK08722, 3-oxoacyl-(acyl carrier protei
2e-12 PLN02787 540
PLN02787, PLN02787, 3-oxoacyl-[acyl-carrier-protei
4e-11 PRK07103 410
PRK07103, PRK07103, polyketide beta-ketoacyl:acyl
2e-07 PRK07910 418
PRK07910, PRK07910, 3-oxoacyl-(acyl carrier protei
4e-06 PRK06501 425
PRK06501, PRK06501, 3-oxoacyl-(acyl carrier protei
0.003
>gnl|CDD|238430 cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II
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Score = 115 bits (291), Expect = 3e-32
Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Query: 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQF 61
+RVV+TGLG V+P+G + W A+ G++ + P++ + S P +IA + D
Sbjct: 1 RRVVITGLGAVTPLGNGVEEFWEALLAGRSGIRPITRFDASGFPSRIAGEVPDFDPEDYL 60
Query: 62 TQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108
+ +LR M R F+L A EALADA +P+ ER GV +G+G+
Sbjct: 61 DRKELRRMDRFAQFALAAAEEALADAGLDPEEL-DPERIGVVIGSGI 106
KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. Length = 406
>gnl|CDD|235987 PRK07314, PRK07314, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Back Show alignment and domain information
Score = 108 bits (273), Expect = 2e-29
Identities = 35/107 (32%), Positives = 59/107 (55%), Gaps = 1/107 (0%)
Query: 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQ 60
+RVVVTGLG VSP+G +S W + GK+ + P++ + S L KIA ++ +
Sbjct: 1 KRRVVVTGLGAVSPLGNDVESTWKNLLAGKSGIGPITHFDTSDLAVKIAGEVKDFNPDDY 60
Query: 61 FTQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTG 107
++ + R M R + + A ++A+ DA E+ +R GV +G+G
Sbjct: 61 MSRKEARRMDRFIQYGIAAAKQAVEDAGLEI-TEENADRIGVIIGSG 106
>gnl|CDD|200247 TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II
Back Show alignment and domain information
Score = 106 bits (267), Expect = 1e-28
Identities = 38/108 (35%), Positives = 61/108 (56%), Gaps = 3/108 (2%)
Query: 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQF 61
+RVVVTGLG V+P+G + W + GK+ + P++ + S LP KIA ++ D +
Sbjct: 1 RRVVVTGLGAVTPLGNGVEEFWENLLAGKSGIGPITRFDASDLPVKIAGEVKDFDPE-DY 59
Query: 62 TQSK-LRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108
K R M R ++L A +EA+ D+ + E+ ER GV +G+G+
Sbjct: 60 IDKKEARRMDRFIQYALAAAKEAVEDSGLDI-EEEDAERVGVIIGSGI 106
3-oxoacyl-[acyl-carrier-protein] synthase 2 (KAS-II, FabF) is involved in the condensation step of fatty acid biosynthesis in which the malonyl donor group is decarboxylated and the resulting carbanion used to attack and extend the acyl group attached to the acyl carrier protein. Most genomes encoding fatty acid biosynthesis contain a number of condensing enzymes, often of all three types: 1, 2 and 3. Synthase 2 is mechanistically related to synthase 1 (KAS-I, FabB) containing a number of absolutely conserved catalytic residues in common. This model is based primarily on genes which are found in apparent operons with other essential genes of fatty acid biosynthesis (GenProp0681). The large gap between the trusted cutoff and the noise cutoff contains many genes which are not found adjacent to genes of the fatty acid pathway in genomes that often also contain a better hit to this model. These genes may be involved in other processes such as polyketide biosyntheses. Some genomes contain more than one above-trusted hit to this model which may result from recent paralogous expansions. Second hits to this model which are not next to other fatty acid biosynthesis genes may be involved in other processes. FabB sequences should fall well below the noise cutoff of this model [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 407
>gnl|CDD|235781 PRK06333, PRK06333, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Back Show alignment and domain information
Score = 92.0 bits (229), Expect = 2e-23
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 8/116 (6%)
Query: 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGL--DLT 58
KR+VVTG+G VSP+G ++ W + G++ + L++ L KI ++ L D
Sbjct: 3 KKRIVVTGMGAVSPLGCGVETFWQRLLAGQSGIRTLTDFPVGDLATKIGGQVPDLAEDAE 62
Query: 59 AQFTQSKL------RTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108
A F + R M R F++ A +EALA A W+P + +ERT +G+G+
Sbjct: 63 AGFDPDRYLDPKDQRKMDRFILFAMAAAKEALAQAGWDPDTLEDRERTATIIGSGV 118
>gnl|CDD|223381 COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
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Score = 91.9 bits (229), Expect = 3e-23
Identities = 41/108 (37%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQ 60
M+RVV+TGLGIVS +G + W A+ GK+ + P++ + S L KIA I+ DL Q
Sbjct: 2 MRRVVITGLGIVSSLGNGVEEVWAALLAGKSGIRPITRFDASGLGVKIAGEIK--DLDDQ 59
Query: 61 FTQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108
+ + R M R + +++A EAL DA + R GVA+G+G+
Sbjct: 60 IAKKERRFMDRFSQLAVVAAVEALEDAGLDN-ELNVDMRVGVAIGSGI 106
>gnl|CDD|215449 PLN02836, PLN02836, 3-oxoacyl-[acyl-carrier-protein] synthase
Back Show alignment and domain information
Score = 88.7 bits (220), Expect = 4e-22
Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 17/124 (13%)
Query: 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSE--------------PEYSKLPCK 47
+RVVVTGLG+V+P+G ++ W + G+ V L++ +LP +
Sbjct: 6 RRVVVTGLGLVTPLGCGVETTWRRLIAGECGVRALTQDDLKMKSEDEETQLYTLDQLPSR 65
Query: 48 IAARIEGLDLTAQFTQSKL---RTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAV 104
+AA + F + R+ SR ++L A EAL+DA+W P ++ KERTGV++
Sbjct: 66 VAALVPRGTGPGDFDEELWLNSRSSSRFIGYALCAADEALSDARWLPSEDEAKERTGVSI 125
Query: 105 GTGM 108
G G+
Sbjct: 126 GGGI 129
>gnl|CDD|215723 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal domain
Back Show alignment and domain information
Score = 80.0 bits (198), Expect = 1e-19
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPL-SEPEYSKLPCKIAARIEGLDLTA 59
+ V +TG+G P G + W + G+ + ++ P ++A I G D A
Sbjct: 1 AEPVAITGMGCRFPGGVGPEEFWELLLAGRDAIREFPADLSGLYPPSRVAGEIYGFDFDA 60
Query: 60 QFTQSKLR---TMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108
F R M +L A EAL DA +P + + +RTGV VG+G
Sbjct: 61 AFFGISPREAEAMDPQQRLALEAAWEALEDAGLDPASLRGSDRTGVFVGSGS 112
The structure of beta-ketoacyl synthase is similar to that of the thiolase family (pfam00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. The N-terminal domain contains most of the structures involved in dimer formation and also the active site cysteine. Length = 243
>gnl|CDD|240245 PTZ00050, PTZ00050, 3-oxoacyl-acyl carrier protein synthase; Provisional
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Score = 74.7 bits (184), Expect = 4e-17
Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 17/114 (14%)
Query: 11 IVSPVGTTRQSAWNAIKEGKACVSPLSEPEY----------------SKLPCKIAARIEG 54
+V+P+G +S W A+ GK+ + L+E + +PC+IAA ++
Sbjct: 1 VVTPLGVGAESTWEALIAGKSGIRKLTEFPKFLPDCIPEQKALENLVAAMPCQIAAEVDQ 60
Query: 55 LDLTAQFTQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108
+ R SRAT F++ A REALADAK + +EK +ER GV +G+G+
Sbjct: 61 SEFDPSDFAPTKRE-SRATHFAMAAAREALADAKLDILSEKDQERIGVNIGSGI 113
>gnl|CDD|236265 PRK08439, PRK08439, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
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Score = 68.6 bits (168), Expect = 6e-15
Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQ 60
MKRVVVTG+G+++ +G ++S++ AI G+ + ++ + S P +IA I D T
Sbjct: 1 MKRVVVTGIGMINSLGLNKESSFKAICNGECGIKKITLFDASDFPVQIAGEITDFDPTEV 60
Query: 61 FTQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108
+++ R L A REA+ DA + P+ E ER GV+ +G+
Sbjct: 61 MDPKEVKKADRFIQLGLKAAREAMKDAGFLPE-ELDAERFGVSSASGI 107
>gnl|CDD|181184 PRK07967, PRK07967, 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed
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Score = 65.1 bits (159), Expect = 8e-14
Identities = 34/109 (31%), Positives = 66/109 (60%), Gaps = 6/109 (5%)
Query: 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSK--LPCKIAARIEGLDLT 58
M+RVV+TGLGIVS +G +Q +++EG++ ++ PE+++ + ++ ++ LD T
Sbjct: 1 MRRVVITGLGIVSSIGNNQQEVLASLREGRSGIT--FSPEFAEMGMRSQVWGNVK-LDPT 57
Query: 59 AQFTQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTG 107
+ +R M A+A++ +A +A+ADA + + + RTG+ G+G
Sbjct: 58 GLIDRKVMRFMGDASAYAYLAMEQAIADAGLSEE-QVSNPRTGLIAGSG 105
>gnl|CDD|238424 cd00828, elong_cond_enzymes, "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases
Back Show alignment and domain information
Score = 64.0 bits (156), Expect = 2e-13
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
Query: 3 RVVVTGLGIVSPVGT---TRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTA 59
RVV+TG+G+VSP G + W A++EG++ ++P++ + + +A +I D+
Sbjct: 2 RVVITGIGVVSPHGEGCDEVEEFWEALREGRSGIAPVARLKS-RFDRGVAGQIPTGDIPG 60
Query: 60 QFTQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108
+ + + R T +L+AT EALADA E GV VG+GM
Sbjct: 61 WDAK-RTGIVDRTTLLALVATEEALADAGITDPYEVHPSEVGVVVGSGM 108
They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues. Length = 407
>gnl|CDD|181657 PRK09116, PRK09116, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Back Show alignment and domain information
Score = 63.5 bits (155), Expect = 3e-13
Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Query: 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPE-YSKLPCKIAARIEGLDLTA 59
M+RVVVTG+G V+ +G Q+ +K G+ V + E + Y L ++AA I+ +L A
Sbjct: 1 MRRVVVTGMGGVTALGEDWQTIAARLKAGRNAVRRMPEWDRYDGLNTRLAAPIDDFELPA 60
Query: 60 QFTQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGT 106
+T+ K+R+M R + + A+ AL DA R G+A G+
Sbjct: 61 HYTRKKIRSMGRVSLMATRASELALEDAGLLGDPILTDGRMGIAYGS 107
>gnl|CDD|238428 cd00832, CLF, Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria
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Score = 61.6 bits (150), Expect = 1e-12
Identities = 28/91 (30%), Positives = 46/91 (50%)
Query: 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQF 61
+R VVTG+G+V+P G + W A+ +G++ + P++ + S P ++A + D
Sbjct: 1 RRAVVTGIGVVAPNGLGVEEYWKAVLDGRSGLGPITRFDPSGYPARLAGEVPDFDAAEHL 60
Query: 62 TQSKLRTMSRATAFSLIATREALADAKWNPQ 92
L R T +L A ALADA +P
Sbjct: 61 PGRLLPQTDRMTRLALAAADWALADAGVDPA 91
CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine. Length = 399
>gnl|CDD|181539 PRK08722, PRK08722, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Back Show alignment and domain information
Score = 61.6 bits (149), Expect = 2e-12
Identities = 30/107 (28%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Query: 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQF 61
+RVVVTG+G++SPVG T +S+W A+ G++ + + + + + A ++ +
Sbjct: 4 RRVVVTGMGMLSPVGNTVESSWKALLAGQSGIVNIEHFDTTNFSTRFAGLVKDFNCEEYM 63
Query: 62 TQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108
++ R M + + A +AL D+ E+ R GVA+G+G+
Sbjct: 64 SKKDARKMDLFIQYGIAAGIQALDDSGLE-VTEENAHRIGVAIGSGI 109
>gnl|CDD|215421 PLN02787, PLN02787, 3-oxoacyl-[acyl-carrier-protein] synthase II
Back Show alignment and domain information
Score = 57.7 bits (139), Expect = 4e-11
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 2/109 (1%)
Query: 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQF 61
+RVVVTG+G+VSP+G +N + EG + +S + + S+ P +IA I+
Sbjct: 129 RRVVVTGMGVVSPLGHDPDVFYNNLLEGVSGISEIERFDCSQFPTRIAGEIKSFSTDGWV 188
Query: 62 TQSKLRTMSRATAFSLIATREALADAKWNPQ--NEKQKERTGVAVGTGM 108
+ M + + L A ++ALAD E K + GV +G+ M
Sbjct: 189 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMKELDKTKCGVLIGSAM 237
>gnl|CDD|180839 PRK07103, PRK07103, polyketide beta-ketoacyl:acyl carrier protein synthase; Validated
Back Show alignment and domain information
Score = 47.3 bits (113), Expect = 2e-07
Identities = 34/113 (30%), Positives = 47/113 (41%), Gaps = 11/113 (9%)
Query: 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCK--------IAARI 52
M VVVTG+G+VS +G R S A+ G+ + P I A +
Sbjct: 1 MDEVVVTGVGVVSAIGQGRPSFAAALLAGRHAFGVMRRPGRQVPDDAGAGLASAFIGAEL 60
Query: 53 EGLDLTAQFTQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVG 105
+ L L + LR S + +L A REA DA P +R G+ VG
Sbjct: 61 DSLALPERLDAKLLRRASLSAQAALAAAREAWRDAALGPV---DPDRIGLVVG 110
>gnl|CDD|236129 PRK07910, PRK07910, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Back Show alignment and domain information
Score = 43.6 bits (103), Expect = 4e-06
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 4 VVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEP--EYSKLPCKIAARI-EGLDLTAQ 60
VVVTG+ + + + T ++ W + +G++ + L +P E LP +I + E D Q
Sbjct: 14 VVVTGIAMTTALATDAETTWKLLLDGQSGIRTLDDPFVEEFDLPVRIGGHLLEEFD--HQ 71
Query: 61 FTQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108
T+ +LR MS S + R +A +P E R V++GTG+
Sbjct: 72 LTRVELRRMSYLQRMSTVLGRRVWENAG-SP--EVDTNRLMVSIGTGL 116
>gnl|CDD|235817 PRK06501, PRK06501, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Back Show alignment and domain information
Score = 35.0 bits (81), Expect = 0.003
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 4 VVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQ 63
V VTG+G+V+ +G + W A+ G++ + ++ L +IA ++ L
Sbjct: 13 VAVTGMGVVTSLGQGKADNWAALTAGESGIHTITRFPTEGLRTRIAGTVDFLPE------ 66
Query: 64 SKLRTMSRATAFSLIATREALADA 87
S + + A + +A EALA A
Sbjct: 67 SPFGASALSEALARLAAEEALAQA 90
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
109
KOG1394|consensus 440
99.95 PRK07314 411
3-oxoacyl-(acyl carrier protein) synthase II; Revi
99.93 PRK09116 405
3-oxoacyl-(acyl carrier protein) synthase II; Revi
99.93 PRK08439 406
3-oxoacyl-(acyl carrier protein) synthase II; Revi
99.93 PRK07967 406
3-oxoacyl-(acyl carrier protein) synthase I; Revie
99.93 PRK08722 414
3-oxoacyl-(acyl carrier protein) synthase II; Revi
99.93 cd00832 399
CLF Chain-length factor (CLF) is a factor required
99.93 PRK07103 410
polyketide beta-ketoacyl:acyl carrier protein synt
99.91 PRK06333 424
3-oxoacyl-(acyl carrier protein) synthase II; Revi
99.91 PLN02787 540
3-oxoacyl-[acyl-carrier-protein] synthase II
99.91 TIGR03150 407
fabF beta-ketoacyl-acyl-carrier-protein synthase I
99.91 PF00109 254
ketoacyl-synt: Beta-ketoacyl synthase, N-terminal
99.9 cd00834 406
KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP)
99.88 PLN02836 437
3-oxoacyl-[acyl-carrier-protein] synthase
99.88 COG0304 412
FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Li
99.87 PRK07910 418
3-oxoacyl-(acyl carrier protein) synthase II; Revi
99.87 PRK06519 398
3-oxoacyl-(acyl carrier protein) synthase II; Revi
99.86 cd00828 407
elong_cond_enzymes "elongating" condensing enzymes
99.86 PRK09185 392
3-oxoacyl-(acyl carrier protein) synthase I; Revie
99.81 cd00833 421
PKS polyketide synthases (PKSs) polymerize simple
99.81 TIGR02813 2582
omega_3_PfaA polyketide-type polyunsaturated fatty
99.8 smart00825 424
PKS_KS Beta-ketoacyl synthase. The structure of be
99.8 PRK05952 381
3-oxoacyl-(acyl carrier protein) synthase II; Revi
99.76 PRK06501 425
3-oxoacyl-(acyl carrier protein) synthase II; Revi
99.74 COG3321 1061
Polyketide synthase modules and related proteins [
99.71 PTZ00050 421
3-oxoacyl-acyl carrier protein synthase; Provision
99.67 KOG1202|consensus 2376
99.48 PRK06147 348
3-oxoacyl-(acyl carrier protein) synthase; Validat
98.89 PRK14691 342
3-oxoacyl-(acyl carrier protein) synthase II; Prov
97.77 cd00825 332
decarbox_cond_enzymes decarboxylating condensing e
97.37 COG0332 323
FabH 3-oxoacyl-[acyl-carrier-protein]
94.11 PF13723 218
Ketoacyl-synt_2: Beta-ketoacyl synthase, N-termina
93.03 PRK09352 319
3-oxoacyl-(acyl carrier protein) synthase III; Rev
92.74 PRK07515 372
3-oxoacyl-(acyl carrier protein) synthase III; Rev
92.18 PLN03172 393
chalcone synthase family protein; Provisional
92.04 cd00327 254
cond_enzymes Condensing enzymes; Family of enzymes
91.79 PLN03171 399
chalcone synthase-like protein; Provisional
91.6 PLN03170 401
chalcone synthase; Provisional
90.23 PRK08256 391
lipid-transfer protein; Provisional
89.74 PLN03173 391
chalcone synthase; Provisional
87.76 PRK06289 403
acetyl-CoA acetyltransferase; Provisional
85.51 PRK05790 393
putative acyltransferase; Provisional
84.94 PRK06064 389
acetyl-CoA acetyltransferase; Provisional
84.8 PRK12578 385
acetyl-CoA acetyltransferase; Provisional
82.33 PLN03168 389
chalcone synthase; Provisional
81.44 PRK07516 389
acetyl-CoA acetyltransferase; Provisional
80.54 KOG3308|consensus 225
80.14
>KOG1394|consensus
Back Hide alignment and domain information
Probab=99.95 E-value=1.4e-27 Score=165.84 Aligned_cols=109 Identities=37% Similarity=0.655 Sum_probs=101.8
Q ss_pred CCcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCCCCcCCCCChHhhhcCCHHHHHHHHHH
Q psy5298 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQSKLRTMSRATAFSLIAT 80 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~al~a~ 80 (109)
|+||||||||+|+|||+++.++|++|++|+|||+.+..++...+++..+|.|+.|+.+.++...+.+.|+.+.+|++.|+
T Consensus 23 ~rRVVITGmG~VTplG~~v~~~w~~Ll~GesGI~~l~~~d~k~~p~~v~g~Ip~f~~e~~~s~~~~r~ms~~~~~al~aa 102 (440)
T KOG1394|consen 23 MRRVVITGMGAVTPLGNGVHTSWRNLLSGESGISSLEGPDYKSIPFTVAGKIPRFSVEDYVSKGDERRMSKFTKLALTAA 102 (440)
T ss_pred ceeEEEeccceeecCCCChHHHHHHhhccccCcccccccccccCcchheeeccccccccccchhhhhhhhHHHHHHHHHH
Confidence 68999999999999999999999999999999999998888889999999999999888899999999999999999999
Q ss_pred HHHHHHcCCCCC--CCCCCCceEEEEeecCC
Q psy5298 81 REALADAKWNPQ--NEKQKERTGVAVGTGMI 109 (109)
Q Consensus 81 ~eAl~~agl~~~--~~~~~~r~gv~iGt~~~ 109 (109)
.|||+|++|.+. +..+..++||.||++++
T Consensus 103 ~eAL~da~~~~~~~~e~dk~~~GV~iGtgmg 133 (440)
T KOG1394|consen 103 EEALKDAGLLDVNLSEEDKEKTGVLIGTGMG 133 (440)
T ss_pred HHHHHhcCCCCcccchhhhhhhceEeccccc
Confidence 999999999864 45678999999999875
>PRK07314 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Back Show alignment and domain information
Probab=99.93 E-value=1.7e-25 Score=160.98 Aligned_cols=107 Identities=33% Similarity=0.620 Sum_probs=99.6
Q ss_pred CCcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCCCCcCCCCChHhhhcCCHHHHHHHHHH
Q psy5298 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQSKLRTMSRATAFSLIAT 80 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~al~a~ 80 (109)
|++|+|||||+++|+|.+++++|++|++|+++++++++|+...++..++|.+++|+++.+++++..+.||++.+|++.++
T Consensus 1 m~~v~ItG~g~~~p~g~~~~~~w~~l~~g~~~~~~~~~~~~~~~~~~~~g~i~~f~~~~~~~~~~~~~~~~~~~l~~~aa 80 (411)
T PRK07314 1 KRRVVVTGLGAVSPLGNDVESTWKNLLAGKSGIGPITHFDTSDLAVKIAGEVKDFNPDDYMSRKEARRMDRFIQYGIAAA 80 (411)
T ss_pred CCcEEEEcceEECCCcCCHHHHHHHHHhCCCcEEECCcccccCCCccEEEEeCCcChhhcCCHHHhhcCCHHHHHHHHHH
Confidence 89999999999999999999999999999999999998887778888899999999888889999999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 81 REALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 81 ~eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
++||+|||+.+ ++.+..|+||++|++.
T Consensus 81 ~~Al~dAGl~~-~~~~~~~~gv~~g~~~ 107 (411)
T PRK07314 81 KQAVEDAGLEI-TEENADRIGVIIGSGI 107 (411)
T ss_pred HHHHHHcCCCc-ccCCcccEEEEEecCc
Confidence 99999999986 5677899999999864
>PRK09116 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Back Show alignment and domain information
Probab=99.93 E-value=1.9e-25 Score=160.69 Aligned_cols=109 Identities=32% Similarity=0.460 Sum_probs=96.0
Q ss_pred CCcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCc-CCCCcceeeecCCCCcCCCCChHhhhcCCHHHHHHHHH
Q psy5298 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEY-SKLPCKIAARIEGLDLTAQFTQSKLRTMSRATAFSLIA 79 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~al~a 79 (109)
|+||||||||+++|+|.+.+++|++|++|+++|+++++|+. ..+++.+++.+++|++.++++++..+.|++..+|++.|
T Consensus 1 m~~VvITG~g~vtp~G~~~~~~~~~L~~g~s~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~r~~~~~~~~al~a 80 (405)
T PRK09116 1 MRRVVVTGMGGVTALGEDWQTIAARLKAGRNAVRRMPEWDRYDGLNTRLAAPIDDFELPAHYTRKKIRSMGRVSLMATRA 80 (405)
T ss_pred CCCEEEEeeEEECCCCCCHHHHHHHHHcCCCCEEeCCchhhccCCCCceEEEecCcChhHhcCHHHHhhCCHHHHHHHHH
Confidence 78999999999999999999999999999999999998753 46788889999988877777888889999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCceEEEEeecCC
Q psy5298 80 TREALADAKWNPQNEKQKERTGVAVGTGMI 109 (109)
Q Consensus 80 ~~eAl~~agl~~~~~~~~~r~gv~iGt~~~ 109 (109)
++|||+|||+........+|+||++|++.+
T Consensus 81 a~~Al~dAGl~~~~~~~~~r~Gv~~Gt~~g 110 (405)
T PRK09116 81 SELALEDAGLLGDPILTDGRMGIAYGSSTG 110 (405)
T ss_pred HHHHHHHcCCCCccccCCCcEEEEEeeccc
Confidence 999999999853233457899999998753
>PRK08439 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Back Show alignment and domain information
Probab=99.93 E-value=4.1e-25 Score=159.03 Aligned_cols=107 Identities=34% Similarity=0.571 Sum_probs=98.6
Q ss_pred CCcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCCCCcCCCCChHhhhcCCHHHHHHHHHH
Q psy5298 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQSKLRTMSRATAFSLIAT 80 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~al~a~ 80 (109)
|+||+|||||+++|+|++++++|++|++|+++|+++++|+...+++.++|.+++|++..+++++..+.+++..+|++.++
T Consensus 1 m~~v~ItG~g~vsp~G~~~~~~~~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~f~~~~~~~~~~~~~~~~~~~l~~~Aa 80 (406)
T PRK08439 1 MKRVVVTGIGMINSLGLNKESSFKAICNGECGIKKITLFDASDFPVQIAGEITDFDPTEVMDPKEVKKADRFIQLGLKAA 80 (406)
T ss_pred CCCEEEEeeEEECCCcCCHHHHHHHHHcCCCceEeCCCccccCCCCceeEEcCCcChhhcCCHHHHhhcCHHHHHHHHHH
Confidence 79999999999999999999999999999999999998887778888899999999877788888899999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 81 REALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 81 ~eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
+|||+|||+++ ...+..|+|+++|++.
T Consensus 81 ~~AL~dAGl~~-~~~~~~r~Gv~~g~~~ 107 (406)
T PRK08439 81 REAMKDAGFLP-EELDAERFGVSSASGI 107 (406)
T ss_pred HHHHHHcCCCc-ccCCCCCEEEEEecCC
Confidence 99999999985 5667889999999864
>PRK07967 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed
Back Show alignment and domain information
Probab=99.93 E-value=5.6e-25 Score=158.30 Aligned_cols=106 Identities=31% Similarity=0.518 Sum_probs=95.8
Q ss_pred CCcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCCCCcCCCCChHhhhcCCHHHHHHHHHH
Q psy5298 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQSKLRTMSRATAFSLIAT 80 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~al~a~ 80 (109)
|+||||||||+++|+|++.+++|++|++|+++|++.++++...+++.+.|+++ |++.++++++..+.+++..++++.|+
T Consensus 1 m~rVvITG~G~vsp~G~~~~~~w~~l~~G~sgi~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~r~~~~a~~aa 79 (406)
T PRK07967 1 MRRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSPEFAEMGMRSQVWGNVK-LDPTGLIDRKVMRFMGDASAYAYLAM 79 (406)
T ss_pred CCcEEEEcceEECCCCCCHHHHHHHHHcCCCceeECCcccccCCCCceEEEcC-CChhhcCCHHHhhcCCHHHHHHHHHH
Confidence 79999999999999999999999999999999999999887788888889875 77766777788889999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 81 REALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 81 ~eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
+|||+|||+.+ ......|+||++|++.
T Consensus 80 ~~Al~dAGl~~-~~~~~~rvGv~~gs~~ 106 (406)
T PRK07967 80 EQAIADAGLSE-EQVSNPRTGLIAGSGG 106 (406)
T ss_pred HHHHHHcCCCC-ccCCCCCEEEEEecCC
Confidence 99999999975 4567789999999875
>PRK08722 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Back Show alignment and domain information
Probab=99.93 E-value=5.3e-25 Score=158.79 Aligned_cols=107 Identities=28% Similarity=0.533 Sum_probs=97.8
Q ss_pred CcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCCCCcCCCCChHhhhcCCHHHHHHHHHHH
Q psy5298 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQSKLRTMSRATAFSLIATR 81 (109)
Q Consensus 2 ~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~al~a~~ 81 (109)
+||+|||||+++|+|++++++|++|++|+++|+++++|+...++..++|.+++|+++.+++++..+.||+..++++.+++
T Consensus 4 ~~VvItG~g~~~p~g~~~~~~w~~L~~g~s~i~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~d~~~~~~l~a~~ 83 (414)
T PRK08722 4 RRVVVTGMGMLSPVGNTVESSWKALLAGQSGIVNIEHFDTTNFSTRFAGLVKDFNCEEYMSKKDARKMDLFIQYGIAAGI 83 (414)
T ss_pred CCEEEEeeEEECCCCCCHHHHHHHHHhCCCeeeecCccccccCCCceeEEcCCCChhHcCCHHHHhhcCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999998877888889999999998777888888999999999999999
Q ss_pred HHHHHcCCCCCCCCCCCceEEEEeecCC
Q psy5298 82 EALADAKWNPQNEKQKERTGVAVGTGMI 109 (109)
Q Consensus 82 eAl~~agl~~~~~~~~~r~gv~iGt~~~ 109 (109)
|||+|||+.+ ...+..|+||++|++.+
T Consensus 84 ~Al~dAGl~~-~~~~~~r~Gv~vGt~~g 110 (414)
T PRK08722 84 QALDDSGLEV-TEENAHRIGVAIGSGIG 110 (414)
T ss_pred HHHHHcCCCc-cccCCCCEEEEEeeCCC
Confidence 9999999974 44567899999999753
>cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria
Back Show alignment and domain information
Probab=99.93 E-value=5.3e-25 Score=158.19 Aligned_cols=107 Identities=28% Similarity=0.470 Sum_probs=97.4
Q ss_pred CcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCCCCcCCCCChHhhhcCCHHHHHHHHHHH
Q psy5298 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQSKLRTMSRATAFSLIATR 81 (109)
Q Consensus 2 ~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~al~a~~ 81 (109)
+||+|||||+++|+|.+++++|++|++|+++++++++|+...+++.+.+.+++|++.++++++..+.||+..+|++.+++
T Consensus 1 ~~VvItG~G~vsp~G~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~d~~~~~~l~aa~ 80 (399)
T cd00832 1 RRAVVTGIGVVAPNGLGVEEYWKAVLDGRSGLGPITRFDPSGYPARLAGEVPDFDAAEHLPGRLLPQTDRMTRLALAAAD 80 (399)
T ss_pred CCEEEEeeEEeCCCCCCHHHHHHHHHhCCCeEeeCCccccccCCCceeEEeCCcChhhcCCHHHHhhCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999988777778888899999987777888889999999999999999
Q ss_pred HHHHHcCCCCCCCCCCCceEEEEeecCC
Q psy5298 82 EALADAKWNPQNEKQKERTGVAVGTGMI 109 (109)
Q Consensus 82 eAl~~agl~~~~~~~~~r~gv~iGt~~~ 109 (109)
|||+|||+++ ...+..|+||++|++.+
T Consensus 81 eAl~dAGl~~-~~~~~~r~Gv~~Gt~~g 107 (399)
T cd00832 81 WALADAGVDP-AALPPYDMGVVTASAAG 107 (399)
T ss_pred HHHHHcCCCc-cccCCCceEEEEccCCc
Confidence 9999999985 45678899999998753
CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine.
>PRK07103 polyketide beta-ketoacyl:acyl carrier protein synthase; Validated
Back Show alignment and domain information
Probab=99.91 E-value=5.7e-24 Score=153.28 Aligned_cols=105 Identities=32% Similarity=0.462 Sum_probs=91.6
Q ss_pred CCcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcC--------CCCcceeeecCCCCcCCCCChHhhhcCCHH
Q psy5298 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYS--------KLPCKIAARIEGLDLTAQFTQSKLRTMSRA 72 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~--------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 72 (109)
|+||||||||+++|+|.+++++|++|++|++++++++.+... .....++++++++++.++++++..+.+++.
T Consensus 1 m~~VvItG~g~vsp~g~~~~~~w~~l~~g~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 80 (410)
T PRK07103 1 MDEVVVTGVGVVSAIGQGRPSFAAALLAGRHAFGVMRRPGRQVPDDAGAGLASAFIGAELDSLALPERLDAKLLRRASLS 80 (410)
T ss_pred CCCEEEEcceEECCCcCCHHHHHHHHHcCCCeEecCCcccccccccccccCCCceEEEEeCCCChhhcCCHHHhhcCCHH
Confidence 899999999999999999999999999999999999876432 234567889998887777888888999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 73 TAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 73 ~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
.++++.+++|||+|||+.+ .+.+|+||++|++.
T Consensus 81 ~~lal~Aa~eAl~dAgl~~---~~~~riGvivG~~~ 113 (410)
T PRK07103 81 AQAALAAAREAWRDAALGP---VDPDRIGLVVGGSN 113 (410)
T ss_pred HHHHHHHHHHHHHhcCcCC---CCCCCEEEEEccCC
Confidence 9999999999999999853 35789999999764
>PRK06333 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Back Show alignment and domain information
Probab=99.91 E-value=9.3e-24 Score=152.55 Aligned_cols=107 Identities=33% Similarity=0.621 Sum_probs=95.6
Q ss_pred CCcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCC--------CCcCCCCChHhhhcCCHH
Q psy5298 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEG--------LDLTAQFTQSKLRTMSRA 72 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~--------~~~~~~~~~~~~~~~~~~ 72 (109)
|++|+|||+|+++|+|.+++++|++|++|++++++++.+....++..++|.+++ |++..+++++..+.||++
T Consensus 3 ~~~V~ItG~g~~~p~g~~~~~~w~~l~~G~s~i~~~~~~~~~~~~~~~~g~i~~~~~~~~~~fd~~~~i~~~~~~~~d~~ 82 (424)
T PRK06333 3 KKRIVVTGMGAVSPLGCGVETFWQRLLAGQSGIRTLTDFPVGDLATKIGGQVPDLAEDAEAGFDPDRYLDPKDQRKMDRF 82 (424)
T ss_pred CCCEEEEcceEECCCCCCHHHHHHHHHcCCCeEEeCCcccccCCCCceEEEeccccccccccCChhHcCCHHHHhhcCHH
Confidence 579999999999999999999999999999999999987666677888899987 777667888889999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCC-CCCceEEEEeecC
Q psy5298 73 TAFSLIATREALADAKWNPQNEK-QKERTGVAVGTGM 108 (109)
Q Consensus 73 ~~~al~a~~eAl~~agl~~~~~~-~~~r~gv~iGt~~ 108 (109)
.++++.+++|||+|||+.+ ... +..|+||++|++.
T Consensus 83 ~~l~~~aa~~Al~dAgl~~-~~~~~~~~~Gv~~g~~~ 118 (424)
T PRK06333 83 ILFAMAAAKEALAQAGWDP-DTLEDRERTATIIGSGV 118 (424)
T ss_pred HHHHHHHHHHHHHhcCCCc-cccCCcccEEEEEecCc
Confidence 9999999999999999985 343 6789999999875
>PLN02787 3-oxoacyl-[acyl-carrier-protein] synthase II
Back Show alignment and domain information
Probab=99.91 E-value=5.9e-24 Score=157.16 Aligned_cols=108 Identities=31% Similarity=0.500 Sum_probs=97.0
Q ss_pred CcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCCCCcCCCCChHhhhcCCHHHHHHHHHHH
Q psy5298 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQSKLRTMSRATAFSLIATR 81 (109)
Q Consensus 2 ~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~al~a~~ 81 (109)
+||||||||+++|+|.+++++|++|++|+++|+++++|+...++..++|++++|++..+++++..+.||+..++++.+++
T Consensus 129 ~rVvITG~G~vtp~G~~~~~~w~~L~~G~s~i~~~~~f~~~~~~~~~ag~i~~f~~~~~l~~k~~r~md~~~~~al~Aa~ 208 (540)
T PLN02787 129 RRVVVTGMGVVSPLGHDPDVFYNNLLEGVSGISEIERFDCSQFPTRIAGEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 208 (540)
T ss_pred CCEEEEeeEEECCCCCCHHHHHHHHHcCCCcccccCccchhhCCccccccccccChhhcCCHHHHHhCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999998877788888899998887777888999999999999999999
Q ss_pred HHHHHcCCCCC--CCCCCCceEEEEeecCC
Q psy5298 82 EALADAKWNPQ--NEKQKERTGVAVGTGMI 109 (109)
Q Consensus 82 eAl~~agl~~~--~~~~~~r~gv~iGt~~~ 109 (109)
|||+|||+.+. +..++.|+||++|++.+
T Consensus 209 eAL~dAGl~~~~~~~~~~~r~GV~vGt~~g 238 (540)
T PLN02787 209 KALADGGITEDVMKELDKTKCGVLIGSAMG 238 (540)
T ss_pred HHHHHcCCCcccccccCCCceEEEEEeccc
Confidence 99999999741 14567899999999753
>TIGR03150 fabF beta-ketoacyl-acyl-carrier-protein synthase II
Back Show alignment and domain information
Probab=99.91 E-value=2.3e-23 Score=149.44 Aligned_cols=106 Identities=35% Similarity=0.651 Sum_probs=97.9
Q ss_pred CcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCCCCcCCCCChHhhhcCCHHHHHHHHHHH
Q psy5298 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQSKLRTMSRATAFSLIATR 81 (109)
Q Consensus 2 ~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~al~a~~ 81 (109)
++|+|||+|+++|+|.+.+++|++|++|++++++++.|+....+..+.|++++|++..+++++..+.|+++.++++.+++
T Consensus 1 ~~v~ItG~g~~~p~g~~~~~~~~~l~~g~s~~~~~~~~~~~~~~~~~~g~i~~f~~~~~~~~~~~~~~~~~~~l~~~aa~ 80 (407)
T TIGR03150 1 RRVVVTGLGAVTPLGNGVEEFWENLLAGKSGIGPITRFDASDLPVKIAGEVKDFDPEDYIDKKEARRMDRFIQYALAAAK 80 (407)
T ss_pred CcEEEEcceEECCCcCCHHHHHHHHHcCCCeeEECCcccccCCCCcEEEEeCCcChhhcCCHHHHhhcCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999988777778888999999998877889999999999999999999
Q ss_pred HHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 82 EALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 82 eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
+||+|||+.+ ...+..++|+++|++.
T Consensus 81 ~Al~dAgl~~-~~~~~~~~gv~~g~~~ 106 (407)
T TIGR03150 81 EAVEDSGLDI-EEEDAERVGVIIGSGI 106 (407)
T ss_pred HHHHhcCCCc-ccCCccceEEEEecCC
Confidence 9999999986 5677899999999864
FabB sequences should fall well below the noise cutoff of this model.
>PF00109 ketoacyl-synt: Beta-ketoacyl synthase, N-terminal domain; InterPro: IPR014030 Beta-ketoacyl-ACP synthase 2
Back Show alignment and domain information
Probab=99.90 E-value=3.3e-23 Score=140.42 Aligned_cols=108 Identities=35% Similarity=0.622 Sum_probs=80.3
Q ss_pred CCcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCC-CCCcCCC---CcceeeecCC--------CCcCCC---CChHh
Q psy5298 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLS-EPEYSKL---PCKIAARIEG--------LDLTAQ---FTQSK 65 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~-~~~~~~~---~~~~~~~i~~--------~~~~~~---~~~~~ 65 (109)
|++|+|||||+++|+|.+.+++|++|++|++++++++ +|+...+ +....+.++. ++.... ++++.
T Consensus 1 m~~V~ItG~g~~~p~g~~~~~~w~~L~~g~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (254)
T PF00109_consen 1 MRRVVITGMGCVTPGGDGLEEFWEALLSGRSGIRPIPERWDPSDYYDPPSRVAGEIDDKKGGFIDDFDFDAYFFGIPPRE 80 (254)
T ss_dssp -S-EEEEEEEEEBTTBSSHHHHHHHHHTT---EEESCSSSCHTTSTTSSCSEEECBSSSEESSSTTTCGGGTSTCHHHHH
T ss_pred CCEEEEEEEEEECcCCCCHHHHHhhhccCceeeeeeccccccccccccCCcccccccccccceeeecccccccccccchh
Confidence 8999999999999999999999999999999999988 4544444 4556676664 333322 33445
Q ss_pred hhcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCC-ceEEEEeecCC
Q psy5298 66 LRTMSRATAFSLIATREALADAKWNPQNEKQKE-RTGVAVGTGMI 109 (109)
Q Consensus 66 ~~~~~~~~~~al~a~~eAl~~agl~~~~~~~~~-r~gv~iGt~~~ 109 (109)
.+.|++..+|++.++.|||+|||+.+ ...... |+||++|++.+
T Consensus 81 ~~~~~~~~~~~l~aa~~Al~dAg~~~-~~~~~~~r~gv~~G~~~~ 124 (254)
T PF00109_consen 81 ARRMDRQSRLALAAAREALEDAGLDP-DDLDGERRVGVFVGSSSG 124 (254)
T ss_dssp HHTS-HHHHHHHHHHHHHHHHHTSTG-GGHTGGGTEEEEEEESSS
T ss_pred hhhhhhhhhHHHHHhhhhcccccccc-cccccccceeeccccccc
Confidence 67999999999999999999999985 333444 59999999864
3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the N-terminal domain of beta-ketoacyl-ACP synthases. ; PDB: 1J3N_B 3KZU_C 1W0I_A 2IX4_A 1F91_B 2BYZ_D 2AQB_C 2BZ3_C 1H4F_C 2VB9_B ....
>cd00834 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II
Back Show alignment and domain information
Probab=99.88 E-value=1.1e-21 Score=140.72 Aligned_cols=106 Identities=38% Similarity=0.699 Sum_probs=97.0
Q ss_pred CcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCCCCcCCCCChHhhhcCCHHHHHHHHHHH
Q psy5298 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQSKLRTMSRATAFSLIATR 81 (109)
Q Consensus 2 ~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~al~a~~ 81 (109)
++|+|||||+++|.|.+.+++|++|++|++++++++.+....++..+.+.+++|++...++++..+.|++..+|++.+++
T Consensus 1 ~~i~I~G~g~~~p~g~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~aa~ 80 (406)
T cd00834 1 RRVVITGLGAVTPLGNGVEEFWEALLAGRSGIRPITRFDASGFPSRIAGEVPDFDPEDYLDRKELRRMDRFAQFALAAAE 80 (406)
T ss_pred CcEEEECcceeCCCcCCHHHHHHHHHcCCCeeEECCcccccCCCccEEEEcCCCChhhcCCHHHhccCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999987766777888999999887767889999999999999999999
Q ss_pred HHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 82 EALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 82 eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
+||+|||+.+ ...+..|+|+++|++.
T Consensus 81 ~AL~dAgl~~-~~~~~~~~gv~~g~~~ 106 (406)
T cd00834 81 EALADAGLDP-EELDPERIGVVIGSGI 106 (406)
T ss_pred HHHHHcCCCc-ccCCccceEEEEccCC
Confidence 9999999986 5667899999999875
KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP.
>PLN02836 3-oxoacyl-[acyl-carrier-protein] synthase
Back Show alignment and domain information
Probab=99.88 E-value=6e-22 Score=143.82 Aligned_cols=104 Identities=38% Similarity=0.729 Sum_probs=83.5
Q ss_pred CcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCc--------------CCCCcceeeecCC------CCcCCCC
Q psy5298 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEY--------------SKLPCKIAARIEG------LDLTAQF 61 (109)
Q Consensus 2 ~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~--------------~~~~~~~~~~i~~------~~~~~~~ 61 (109)
++|+|||||+++|+|.+++++|++|++|+++|++++.+.. ..+++..++.++. |++..+.
T Consensus 6 ~~VvItG~g~~~p~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~ 85 (437)
T PLN02836 6 RRVVVTGLGLVTPLGCGVETTWRRLIAGECGVRALTQDDLKMKSEDEETQLYTLDQLPSRVAALVPRGTGPGDFDEELWL 85 (437)
T ss_pred CCEEEEeeeEECCCCCCHHHHHHHHHcCCCccccCChhhhccccccccccccccccCCccEEEEeccccccccCChHHhc
Confidence 6899999999999999999999999999999999986431 3455677777753 4433222
Q ss_pred ChHhhhcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 62 TQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 62 ~~~~~~~~~~~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
..+++++..++++.|++|||+|||+.+.+....+|+||++|++.
T Consensus 86 ---~~~~~~~~~~~~~~aa~~Al~dAg~~~~~~~~~~~~Gv~~Gt~~ 129 (437)
T PLN02836 86 ---NSRSSSRFIGYALCAADEALSDARWLPSEDEAKERTGVSIGGGI 129 (437)
T ss_pred ---cccccCHHHHHHHHHHHHHHHHcCCCcccccCCcCEEEEEeecc
Confidence 14679999999999999999999997533346789999999875
>COG0304 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Back Show alignment and domain information
Probab=99.87 E-value=6.7e-22 Score=142.08 Aligned_cols=106 Identities=38% Similarity=0.603 Sum_probs=93.4
Q ss_pred CCcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCCCCcCCCCChHhhhcCCHHHHHHHHHH
Q psy5298 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQSKLRTMSRATAFSLIAT 80 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~al~a~ 80 (109)
|+||||||+|+++|+|++.+++|++|+.|++++.+++.|+...+.+.+.+.++.+ .+++.++..++||++.+|++.|+
T Consensus 2 ~~rvviTG~g~vs~lG~~~~~~~~~l~~g~sgi~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~d~~~~~a~~Aa 79 (412)
T COG0304 2 MRRVVITGLGIVSSLGNGVEEVWAALLAGKSGIRPITRFDASGLGVKIAGEIKDL--DDQIAKKERRFMDRFSQLAVVAA 79 (412)
T ss_pred CceEEEecceeeecccCCHHHHHHHHhcCCCCCCccccccccCCCCccccccccc--ccccchHHhhcccHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999888888888999887 44567777779999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCceEEEEeecCC
Q psy5298 81 REALADAKWNPQNEKQKERTGVAVGTGMI 109 (109)
Q Consensus 81 ~eAl~~agl~~~~~~~~~r~gv~iGt~~~ 109 (109)
.|||+||||......++ |+|+++|++.+
T Consensus 80 ~eAl~dAgl~~~~~~~~-r~gv~iGsg~g 107 (412)
T COG0304 80 VEALEDAGLDNELNVDM-RVGVAIGSGIG 107 (412)
T ss_pred HHHHHHcCCCcccccCc-cEEEEEeccCC
Confidence 99999999983222233 99999999874
>PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Back Show alignment and domain information
Probab=99.87 E-value=1.7e-21 Score=140.87 Aligned_cols=104 Identities=27% Similarity=0.460 Sum_probs=87.6
Q ss_pred CCcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCC--cCCCCcceeeecC-CCCcCCCCChHhhhcCCHHHHHHH
Q psy5298 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPE--YSKLPCKIAARIE-GLDLTAQFTQSKLRTMSRATAFSL 77 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~--~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~al 77 (109)
|+||+|||||+++|+|++.+++|++|++|++++++++.+. ...++..+++.++ +|+ ..++++..+.||+..++++
T Consensus 11 ~~~VvItGig~~sp~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~g~i~~~~d--~~~~~~~~~~~d~~~~~~l 88 (418)
T PRK07910 11 FPNVVVTGIAMTTALATDAETTWKLLLDGQSGIRTLDDPFVEEFDLPVRIGGHLLEEFD--HQLTRVELRRMSYLQRMST 88 (418)
T ss_pred CCCEEEEeeEEECCCCCCHHHHHHHHHcCCCeeEeCChhhhhccCCCcceEEEeccCcc--ccCCHHHHhhccHHHHHHH
Confidence 6899999999999999999999999999999999987642 2345667778874 344 3477888899999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCceEEEEeecCC
Q psy5298 78 IATREALADAKWNPQNEKQKERTGVAVGTGMI 109 (109)
Q Consensus 78 ~a~~eAl~~agl~~~~~~~~~r~gv~iGt~~~ 109 (109)
.+++|||+|||+.. .++.|+||++|++.+
T Consensus 89 ~aa~~AledAg~~~---~~~~r~Gv~~G~~~g 117 (418)
T PRK07910 89 VLGRRVWENAGSPE---VDTNRLMVSIGTGLG 117 (418)
T ss_pred HHHHHHHHHcCCCC---CCcccEEEEEEEccC
Confidence 99999999999852 467899999999753
>PRK06519 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Back Show alignment and domain information
Probab=99.86 E-value=3.7e-21 Score=138.26 Aligned_cols=103 Identities=25% Similarity=0.399 Sum_probs=77.0
Q ss_pred CcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCCCCcCCCCChH-hhhcCCHHHHHHHHHH
Q psy5298 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQS-KLRTMSRATAFSLIAT 80 (109)
Q Consensus 2 ~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~al~a~ 80 (109)
+||||||||+++|+|++++++|++|++|+++ ...+......++. ..+.++++..+++++ ..++|++..+|++.|+
T Consensus 6 ~rVvITGiG~vsp~G~~~e~~w~aL~~G~sg-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~r~~~r~~~~a~~Aa 81 (398)
T PRK06519 6 NDVVITGIGLVSSLGEGLDAHWNALSAGRPQ-PNVDTETFAPYPV---HPLPEIDWSQQIPKRGDQRQMETWQRLGTYAA 81 (398)
T ss_pred CCEEEEcceEECCCCCCHHHHHHHHHcCCCC-CCCCcccccCcCc---ccccccChhhcCCchhhhhccCHHHHHHHHHH
Confidence 5899999999999999999999999999998 2222111111222 222333434445555 6688999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCceEEEEeecCC
Q psy5298 81 REALADAKWNPQNEKQKERTGVAVGTGMI 109 (109)
Q Consensus 81 ~eAl~~agl~~~~~~~~~r~gv~iGt~~~ 109 (109)
.|||+|||+.. ...+.+|+||++||+.+
T Consensus 82 ~~Al~dAGl~~-~~~~~~r~GvivGt~~g 109 (398)
T PRK06519 82 GLALDDAGIKG-NEELLSTMDMIVAAGGG 109 (398)
T ss_pred HHHHHHcCCCC-CCCCccceEEEEEeCCC
Confidence 99999999974 33456799999999864
>cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases
Back Show alignment and domain information
Probab=99.86 E-value=9.7e-21 Score=136.07 Aligned_cols=101 Identities=36% Similarity=0.588 Sum_probs=89.1
Q ss_pred CcEEEEecceeCCCCCC---HHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCCCCcCCCCChHhhhcC---CHHHHH
Q psy5298 2 KRVVVTGLGIVSPVGTT---RQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQSKLRTM---SRATAF 75 (109)
Q Consensus 2 ~~V~ItG~g~vs~lG~~---~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~ 75 (109)
.||+|||||+++|+|.+ .+++|++|.+|++++++++.+. ..++..+.|.+++|+ ++++..+.+ ++..+|
T Consensus 1 ~~v~ItG~g~v~p~g~~~~~~~~~w~~l~~g~s~i~~~~~~~-~~~~~~~~g~i~~~~----~~~~~~~~~~~~~~~~~l 75 (407)
T cd00828 1 SRVVITGIGVVSPHGEGCDEVEEFWEALREGRSGIAPVARLK-SRFDRGVAGQIPTGD----IPGWDAKRTGIVDRTTLL 75 (407)
T ss_pred CCEEEECceeecCCCCCCCCHHHHHHHHHcCCCceeeCCccc-ccCCccEEEEccCCC----cCHHHHHhccCCCHHHHH
Confidence 48999999999999999 9999999999999999998876 566778889998765 566667777 999999
Q ss_pred HHHHHHHHHHHcCCCCCCC-CCCCceEEEEeecC
Q psy5298 76 SLIATREALADAKWNPQNE-KQKERTGVAVGTGM 108 (109)
Q Consensus 76 al~a~~eAl~~agl~~~~~-~~~~r~gv~iGt~~ 108 (109)
++.++++||+|||+.+ .. ++..|+|+++|++.
T Consensus 76 ~~~aa~~Al~dAGl~~-~~~~~~~~~gv~~g~~~ 108 (407)
T cd00828 76 ALVATEEALADAGITD-PYEVHPSEVGVVVGSGM 108 (407)
T ss_pred HHHHHHHHHHhCCCCc-cccCCccCeEEEEeecc
Confidence 9999999999999985 45 67899999999875
They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues.
>PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed
Back Show alignment and domain information
Probab=99.81 E-value=2.2e-19 Score=128.95 Aligned_cols=102 Identities=22% Similarity=0.342 Sum_probs=79.7
Q ss_pred CCcEEEEecceeCCCCCCHHHHHHHHHcCC-CceeeCCCCCcCCCCcceeeecCCCCcCCCCChHhhhcCCHHHHHHHHH
Q psy5298 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGK-ACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQSKLRTMSRATAFSLIA 79 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~~~~~~~l~~g~-s~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~al~a 79 (109)
|+||||||+|+++|+|++++++|++|++|+ ++|++++.+... ++. ..|.+++|+. ..++++..+.+++..++++.|
T Consensus 1 m~~VvITG~G~vsp~G~~~~~~~~~l~~G~~sgi~~~~~~~~~-~~~-~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~a 77 (392)
T PRK09185 1 MTPVYISAFGATSALGRGLDAILAALRAGRASGMRPCDFWLVD-LPT-WVGEVVGVEL-PALPAALAAFDCRNNRLALLA 77 (392)
T ss_pred CCcEEEEeeEEECCCcCCHHHHHHHHHcCCCCCeEeCcccccc-CCe-EEEEecCccc-ccCCHHHHhcCCHHHHHHHHH
Confidence 899999999999999999999999999999 999999876532 333 3477776652 345666677888888888887
Q ss_pred HHH---HHHHcCCCCCCCCCCCceEEEEeecCC
Q psy5298 80 TRE---ALADAKWNPQNEKQKERTGVAVGTGMI 109 (109)
Q Consensus 80 ~~e---Al~~agl~~~~~~~~~r~gv~iGt~~~ 109 (109)
+.+ |+.+++ ...+.+|+||++|++.+
T Consensus 78 ~~~~~~a~~~~~----~~~~~~r~gv~~Gt~~g 106 (392)
T PRK09185 78 LQQIEPAVEAAI----ARYGADRIGVVLGTSTS 106 (392)
T ss_pred HHHHHHHHHhhc----ccCCCCcEEEEEeeCCc
Confidence 776 555554 12356799999998753
>cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations
Back Show alignment and domain information
Probab=99.81 E-value=1.6e-19 Score=129.95 Aligned_cols=106 Identities=22% Similarity=0.350 Sum_probs=86.8
Q ss_pred CcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCC--CCcC----------CCCcceeeecCC---CCcCCC-CChHh
Q psy5298 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSE--PEYS----------KLPCKIAARIEG---LDLTAQ-FTQSK 65 (109)
Q Consensus 2 ~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~--~~~~----------~~~~~~~~~i~~---~~~~~~-~~~~~ 65 (109)
.+|+|||||+++|+|.+.+++|++|++|++++++++. |... .......+.+++ |++..+ ++++.
T Consensus 1 ~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~ 80 (421)
T cd00833 1 EPIAIVGMACRFPGAADPDEFWENLLEGRDAISEIPEDRWDADGYYPDPGKPGKTYTRRGGFLDDVDAFDAAFFGISPRE 80 (421)
T ss_pred CCEEEEceeeECCCCCCHHHHHHHHHcCCCcCcCCChhHcCccccccccccCCCcceecceecCCcccCCHhHcCCCHHH
Confidence 4799999999999999999999999999999998873 3322 124455677765 444333 67888
Q ss_pred hhcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 66 LRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 66 ~~~~~~~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
.+.+++..+|++.|+++||+|||+.+ ...+..|+|+++|++.
T Consensus 81 ~~~~~~~~~l~~~aa~~AL~dAgl~~-~~~~~~~~gv~~g~~~ 122 (421)
T cd00833 81 AEAMDPQQRLLLEVAWEALEDAGYSP-ESLAGSRTGVFVGASS 122 (421)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCc-hhcCCCCceEEeCcCH
Confidence 89999999999999999999999985 4567899999999864
PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits.
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA
Back Show alignment and domain information
Probab=99.80 E-value=4.9e-19 Score=146.81 Aligned_cols=105 Identities=16% Similarity=0.271 Sum_probs=90.1
Q ss_pred CcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCC--CCCcC-----------CCCcceeeecC--CCCcCCC-CChHh
Q psy5298 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLS--EPEYS-----------KLPCKIAARIE--GLDLTAQ-FTQSK 65 (109)
Q Consensus 2 ~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~--~~~~~-----------~~~~~~~~~i~--~~~~~~~-~~~~~ 65 (109)
++|+|||||+++|.|.|+++||++|++|+++|++++ +|+.. ..++..+|+++ +||+.++ ++++.
T Consensus 7 ~~IAIvGmg~~~P~a~~~~~fW~~L~~G~~~i~~ip~~rw~~~~~~~~~~~~~~~~~~~~ggfl~~v~FD~~~F~i~p~e 86 (2582)
T TIGR02813 7 MPIAIVGMASIFANSRYLNKFWDLIFEKIDAITDVPSDHWAKDDYYDSDKSEADKSYCKRGGFLPEVDFNPMEFGLPPNI 86 (2582)
T ss_pred CCEEEEeeeeeCCCCCCHHHHHHHHHcCCCccCCCChhhCChhhccCccccccCCcccceeEecCccCCCHhhcCCCHHH
Confidence 469999999999999999999999999999999886 34322 24567788887 4777665 89999
Q ss_pred hhcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 66 LRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 66 ~~~~~~~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
.+.||+++++++.+++|||+|||+.. ..+++|+||++|++.
T Consensus 87 a~~mDpqqrl~L~~a~eALedAG~~~--~~~~~r~GV~~G~~~ 127 (2582)
T TIGR02813 87 LELTDISQLLSLVVAKEVLNDAGLPD--GYDRDKIGITLGVGG 127 (2582)
T ss_pred HHhcCHHHHHHHHHHHHHHHhCCCCC--CCCCCCEEEEEEECC
Confidence 99999999999999999999999964 367899999999864
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
>smart00825 PKS_KS Beta-ketoacyl synthase
Back Show alignment and domain information
Probab=99.80 E-value=3.8e-19 Score=128.36 Aligned_cols=104 Identities=19% Similarity=0.318 Sum_probs=85.6
Q ss_pred EEEEecceeCCCCCCHHHHHHHHHcCCCceeeCC--CCCcCC------------CCcceeeecC---CCCcCCC-CChHh
Q psy5298 4 VVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLS--EPEYSK------------LPCKIAARIE---GLDLTAQ-FTQSK 65 (109)
Q Consensus 4 V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~--~~~~~~------------~~~~~~~~i~---~~~~~~~-~~~~~ 65 (109)
|+|||||+++|+|.+.+++|++|++|++++++++ +|.... ..+..++.++ +|++..+ ++++.
T Consensus 1 v~ItG~g~~~p~g~~~~~~~~~l~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~~~~~i~~~~ 80 (424)
T smart00825 1 IAIVGMSCRFPGADSPEEFWDLLREGRDAITEIPADRWDADAFYYDPDPDRPGKSYVRWGGFLDDVDLFDAAFFGISPRE 80 (424)
T ss_pred CEEEEEEeeCCCCCCHHHHHHHHHcCCcccccCChHHcCccccccccccccCCCcccccceecCchhhCCHhHcCCCHHH
Confidence 7999999999999999999999999999999886 343222 2445566554 3666554 78888
Q ss_pred hhcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 66 LRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 66 ~~~~~~~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
.+.+++..+|++.|+++||+|||+++ ...+.+|+||++|++.
T Consensus 81 ~~~~~~~~~l~~~aa~~Al~dAGl~~-~~id~~~~gv~~g~~~ 122 (424)
T smart00825 81 AEAMDPQQRLLLEVAWEALEDAGIDP-ESLRGSRTGVFVGAMS 122 (424)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCh-hHcCCCCCEEEEEEcH
Confidence 89999999999999999999999986 5567789999999763
The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains.
>PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Back Show alignment and domain information
Probab=99.76 E-value=4.8e-18 Score=121.67 Aligned_cols=89 Identities=27% Similarity=0.405 Sum_probs=66.6
Q ss_pred CCcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCCCCcCCCCChHhhhcCCHHHHHHHHHH
Q psy5298 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQSKLRTMSRATAFSLIAT 80 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~al~a~ 80 (109)
|+||||||+|+++|+|+ ++++|++|++|+|+|++++.|.. .+....+.+. +. + ..+++ ++..++
T Consensus 1 ~~rVvITG~G~vsp~G~-~~~~~~~l~~G~sgi~~~~~~~~--~~~~~~~~~~-~~------~---~~~~~---~~~~a~ 64 (381)
T PRK05952 1 MMKVVVTGIGLVSALGD-LEQSWQRLLQGKSGIKLHQPFPE--LPPLPLGLIG-NQ------P---SSLED---LTKTVV 64 (381)
T ss_pred CCeEEEEeeEEECcccC-HHHHHHHHHcCCCCeEeCCcccc--cccccceeec-cc------c---ccccH---HHHHHH
Confidence 89999999999999999 99999999999999999887642 1211111111 00 0 12333 566889
Q ss_pred HHHHHHcCCCCCCCCCCCceEEEEeecCC
Q psy5298 81 REALADAKWNPQNEKQKERTGVAVGTGMI 109 (109)
Q Consensus 81 ~eAl~~agl~~~~~~~~~r~gv~iGt~~~ 109 (109)
+|||+|||+.+ +.+|+||++||+.+
T Consensus 65 ~~Al~dagl~~----~~~~~Gv~~Gt~~g 89 (381)
T PRK05952 65 TAALKDAGLTP----PLTDCGVVIGSSRG 89 (381)
T ss_pred HHHHHhcCCCC----CCCCEEEEEeeCcc
Confidence 99999999974 24899999999753
>PRK06501 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Back Show alignment and domain information
Probab=99.74 E-value=3.7e-17 Score=118.55 Aligned_cols=99 Identities=24% Similarity=0.411 Sum_probs=80.0
Q ss_pred CcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCCCCcCCCCChHhhhcCCHHHHHHHHHHH
Q psy5298 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQSKLRTMSRATAFSLIATR 81 (109)
Q Consensus 2 ~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~al~a~~ 81 (109)
.+|+|||||+++|+|.+.+++|++|++|+++++++++|+...+++.++|.++.++ ... ...+++..++++.+++
T Consensus 11 ~~VvITG~G~vs~~G~~~~~~~~~L~~G~s~i~~~~~~~~~~~~~~~~g~~~~~~-~~~-----~~~~~~~~~~~~~aa~ 84 (425)
T PRK06501 11 PIVAVTGMGVVTSLGQGKADNWAALTAGESGIHTITRFPTEGLRTRIAGTVDFLP-ESP-----FGASALSEALARLAAE 84 (425)
T ss_pred cCEEEEeeeEECCCCCCHHHHHHHHHcCCCceEcCCcccccCCCCceEEEEeecc-ccc-----ccccCHHHHHHHHHHH
Confidence 3799999999999999999999999999999999999887778888889886332 221 2236788999999999
Q ss_pred HHHHHcCCCCCCC--------------CCCCceEEEEeec
Q psy5298 82 EALADAKWNPQNE--------------KQKERTGVAVGTG 107 (109)
Q Consensus 82 eAl~~agl~~~~~--------------~~~~r~gv~iGt~ 107 (109)
|||+|||+.+ .+ ...+|.+++.++.
T Consensus 85 ~Al~dAgl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (425)
T PRK06501 85 EALAQAGIGK-GDFPGPLFLAAPPVELEWPARFALAAAVG 123 (425)
T ss_pred HHHHHcCCCc-cccccceeeccccccCCCCceEEEEEecC
Confidence 9999999853 11 1256888888765
>COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Back Show alignment and domain information
Probab=99.71 E-value=6.9e-17 Score=127.15 Aligned_cols=105 Identities=19% Similarity=0.308 Sum_probs=89.8
Q ss_pred cEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCC--CCcC-----------CCCcceeeecC---CCCcCCC-CChHh
Q psy5298 3 RVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSE--PEYS-----------KLPCKIAARIE---GLDLTAQ-FTQSK 65 (109)
Q Consensus 3 ~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~--~~~~-----------~~~~~~~~~i~---~~~~~~~-~~~~~ 65 (109)
.|+|+||+|.+|..++++++|++|.+|++.|+.++. |+.+ ..+...+|+++ .||+.++ ++|++
T Consensus 5 ~IAIiGm~~rfPga~~~~~~W~~l~~g~~~i~~ip~~rwd~~~~~~~~~~~~gk~~~~~ggfl~~~~~FD~~fFgisPrE 84 (1061)
T COG3321 5 PIAIIGMACRFPGADSPEEFWDLLKEGRDEITEVPADRWDVDAYYDPDPTVPGKSYSRWGGFLDDVDDFDALFFGISPRE 84 (1061)
T ss_pred cEEEEeccccCCCCCCHHHHHHHHhcCCceeeecChhhhhHhhccCCccccccccccccccccCCccccCHHHcCCCHHH
Confidence 499999999999999999999999999999999984 2211 12345667766 4888765 99999
Q ss_pred hhcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 66 LRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 66 ~~~~~~~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
...||++.++.+..+++||||||+.+ ..+...++||++|.+.
T Consensus 85 A~~mDPQqRllLe~aw~AlEdAG~~~-~~l~g~~tgV~~g~~~ 126 (1061)
T COG3321 85 AEAMDPQQRLLLEVAWEALEDAGIYP-DSLRGSATGVFAGASV 126 (1061)
T ss_pred HHhcCchHhHHHHHHHHHHHHcCCCc-cccCCcceEEEEeecc
Confidence 99999999999999999999999997 6677789999999875
>PTZ00050 3-oxoacyl-acyl carrier protein synthase; Provisional
Back Show alignment and domain information
Probab=99.67 E-value=6e-16 Score=112.13 Aligned_cols=94 Identities=40% Similarity=0.698 Sum_probs=76.5
Q ss_pred eeCCCCCCHHHHHHHHHcCCCceeeCCCCC----------------cCCCCcceeeecC--CCCcCCCCChHhhhcCCHH
Q psy5298 11 IVSPVGTTRQSAWNAIKEGKACVSPLSEPE----------------YSKLPCKIAARIE--GLDLTAQFTQSKLRTMSRA 72 (109)
Q Consensus 11 ~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~----------------~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~~~~ 72 (109)
+|+|+|++++++|++|++|++++++++.+. ...+++.++|+|+ +|++..+.. ..+.++.
T Consensus 1 ~vs~~G~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~f~~~~~~~---~~~~~~~ 77 (421)
T PTZ00050 1 VVTPLGVGAESTWEALIAGKSGIRKLTEFPKFLPDCIPEQKALENLVAAMPCQIAAEVDQSEFDPSDFAP---TKRESRA 77 (421)
T ss_pred CCCCCcCCHHHHHHHHHcCCCeeecCCchhhcccccccccccccccccCCCCceEEECCcccCChhHcCC---cccCCHH
Confidence 589999999999999999999999998765 3456778888887 465543321 2346999
Q ss_pred HHHHHHHHHHHHHHcCCC-CCCCCCCCceEEEEeecC
Q psy5298 73 TAFSLIATREALADAKWN-PQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 73 ~~~al~a~~eAl~~agl~-~~~~~~~~r~gv~iGt~~ 108 (109)
.+|++.++++||+|||+. + ...+..|+|+++|++.
T Consensus 78 ~~l~~~aa~~Al~dAGl~~~-~~~~~~~~Gv~~g~~~ 113 (421)
T PTZ00050 78 THFAMAAAREALADAKLDIL-SEKDQERIGVNIGSGI 113 (421)
T ss_pred HHHHHHHHHHHHHHcCCCcc-cccCcccEEEEEccCc
Confidence 999999999999999997 4 4567789999999875
>KOG1202|consensus
Back Show alignment and domain information
Probab=99.48 E-value=1.9e-13 Score=107.10 Aligned_cols=108 Identities=23% Similarity=0.238 Sum_probs=90.1
Q ss_pred CCcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCc--ceeeecCC---CCcCCC-CChHhhhcCCHHHH
Q psy5298 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPC--KIAARIEG---LDLTAQ-FTQSKLRTMSRATA 74 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~--~~~~~i~~---~~~~~~-~~~~~~~~~~~~~~ 74 (109)
+.+|||+|++...|-..|.++||++|++|.+.++..++.+..+++. ...|..++ ||...+ ..+++...||++.+
T Consensus 10 ~edIvIsG~sgklPes~nv~eF~~nLl~g~DmVtdd~rrW~~G~ygLP~r~gKlKdL~kFDa~ff~vh~KQa~~MDPq~R 89 (2376)
T KOG1202|consen 10 QEDIVISGMSGKLPESDNVKEFGDNLLAGVDMVTDDPRRWEAGLYGLPKRSGKLKDLNKFDAGFFGVHPKQANTMDPQLR 89 (2376)
T ss_pred CCcEEEeccCCCCCCcccHHHHhhhhhcccccccCCcccccccccCCchhhcchhhhhhhcccccCcCcccccccCHHHH
Confidence 4689999999999999999999999999999999888654433321 12355554 665543 67899999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCceEEEEeecCC
Q psy5298 75 FSLIATREALADAKWNPQNEKQKERTGVAVGTGMI 109 (109)
Q Consensus 75 ~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~~~ 109 (109)
|.+++.+||+-|||++| ..+.+.|+||++|.+.+
T Consensus 90 lLLE~t~EAivDaGiNP-~~LRGs~tGv~vg~s~s 123 (2376)
T KOG1202|consen 90 LLLEATWEAIVDAGINP-DDLRGSRTGVFVGVSGS 123 (2376)
T ss_pred HHHHHHHHHHHhCCCCh-hhcCcccceeEEeecCc
Confidence 99999999999999998 78899999999998764
>PRK06147 3-oxoacyl-(acyl carrier protein) synthase; Validated
Back Show alignment and domain information
Probab=98.89 E-value=1.4e-08 Score=72.35 Aligned_cols=91 Identities=18% Similarity=0.185 Sum_probs=60.9
Q ss_pred CCcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCcceee-ecCCCCcCCCCChHhhhcCCHHHHHHHHH
Q psy5298 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAA-RIEGLDLTAQFTQSKLRTMSRATAFSLIA 79 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~al~a 79 (109)
|+.|+|+|+|++||+|.+.++.|.+++.|.+.....+.++... ..++.+ ... .... .....+...|+..|
T Consensus 2 ~~~v~I~~~g~vs~lG~~~~~~~aa~ragi~~~~~~~~~~~~~-~~~i~~~~~~---~~~~-----~~~~~r~~~La~~A 72 (348)
T PRK06147 2 MRALAIVGSGMVTAVGLDAPSSCAAIRARLDNFQETRFIDPPG-GEWLIGAPVP---LPPP-----WRGPERLAEMAAPA 72 (348)
T ss_pred CCceEEEecceeecCcCCHHHHHHHHHcccccccccccccCCC-CCceEeecCc---CCcc-----cCchHHHHHHHHHH
Confidence 7889999999999999999999999988877664443332110 111111 111 0111 12245788999999
Q ss_pred HHHHHHHcC-CCCCCCCCCCceEEEEee
Q psy5298 80 TREALADAK-WNPQNEKQKERTGVAVGT 106 (109)
Q Consensus 80 ~~eAl~~ag-l~~~~~~~~~r~gv~iGt 106 (109)
+++||++++ +++ .++.++|+.
T Consensus 73 l~~aL~~a~~~~~------~~i~lil~~ 94 (348)
T PRK06147 73 IAEALEGLPALDA------SEAPLLLCV 94 (348)
T ss_pred HHHHHHhcccccc------cCCcEEEEe
Confidence 999999998 342 457777775
>PRK14691 3-oxoacyl-(acyl carrier protein) synthase II; Provisional
Back Show alignment and domain information
Probab=97.77 E-value=5.9e-05 Score=53.85 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeecCC
Q psy5298 69 MSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGMI 109 (109)
Q Consensus 69 ~~~~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~~~ 109 (109)
++|..+|++.+++|||+|||+. .+++|+||++|++.+
T Consensus 1 ~~~~~~~~~~a~~~a~~~a~~~----~~~~r~Gv~~G~~~g 37 (342)
T PRK14691 1 MGRWWRYKWITFHPSLTHADNT----EKQERTATIIGAGIG 37 (342)
T ss_pred CCHHHHHHHHHHHHHHHhCCCC----CCcccEEEEEecCcc
Confidence 5789999999999999999975 246899999999864
>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction
Back Show alignment and domain information
Probab=97.37 E-value=0.00052 Score=48.07 Aligned_cols=36 Identities=31% Similarity=0.409 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
..++++.|+++||++||+++ .....+..++++|++.
T Consensus 11 ~~~l~~~aa~~aL~~Ag~~~-~~~~~~i~~ii~~~~~ 46 (332)
T cd00825 11 VSILGFEAAERAIADAGLSR-EYQKNPIVGVVVGTGG 46 (332)
T ss_pred HHHHHHHHHHHHHHHcCCCc-cccCCCCEEEEEEeCC
Confidence 67899999999999999984 3445678899999874
Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]
Back Show alignment and domain information
Probab=94.11 E-value=0.25 Score=35.29 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeec
Q psy5298 71 RATAFSLIATREALADAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 71 ~~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~ 107 (109)
....|+..|+++||++||+.+ +.+.++|-++
T Consensus 51 ~~s~la~~Aa~~AL~~Agi~~------~dIDlII~aT 81 (323)
T COG0332 51 TTSDLAVEAARKALEDAGISP------DDIDLIIVAT 81 (323)
T ss_pred cHHHHHHHHHHHHHHHcCCCH------HHCCEEEEEc
Confidence 367899999999999999986 4565555544
>PF13723 Ketoacyl-synt_2: Beta-ketoacyl synthase, N-terminal domain
Back Show alignment and domain information
Probab=93.03 E-value=0.29 Score=33.05 Aligned_cols=42 Identities=24% Similarity=0.292 Sum_probs=32.6
Q ss_pred CCCChHhhhcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeecCC
Q psy5298 59 AQFTQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGMI 109 (109)
Q Consensus 59 ~~~~~~~~~~~~~~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~~~ 109 (109)
.++|+...|+|++..++++.++.+++++.. +.+ .+|++|+.|
T Consensus 21 ~~lp~m~rRRls~~~rla~~~a~~~~~~~~-------~~d--~~VfaS~~G 62 (218)
T PF13723_consen 21 AFLPPMQRRRLSRLSRLALEAALECLAEDE-------QPD--AIVFASRHG 62 (218)
T ss_pred ccCCHHHHcccCHHHHHHHHHHHHHHhccC-------CCC--cEEEEeCCC
Confidence 468999999999999999999999886531 111 678887654
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Back Show alignment and domain information
Probab=92.74 E-value=0.5 Score=33.05 Aligned_cols=81 Identities=15% Similarity=0.152 Sum_probs=46.1
Q ss_pred CCcEEEEecceeCCCCC-CHHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCCCCcCCCCChHhhhcCCHHHHHHHHH
Q psy5298 1 MKRVVVTGLGIVSPVGT-TRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQSKLRTMSRATAFSLIA 79 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~-~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~al~a 79 (109)
|.+|.|+++|...|--. ..+++.+.+......+.. ..++.... ...+ -.....|+..|
T Consensus 1 ~~~v~I~ai~~~lP~~~~~~~~~~~~~~~~~~~i~~-----~~gi~~r~-----------~~~~-----~~~~~~la~~A 59 (319)
T PRK09352 1 MMYAKILGTGSYLPERVVTNDDLEKMVDTSDEWIVT-----RTGIKERR-----------IAAP-----DETTSDLATEA 59 (319)
T ss_pred CCceEEEEEEEECCCeEEcHHHHHHHcCCCHHHhhh-----hcCeEEEE-----------eCCC-----CCCHHHHHHHH
Confidence 78999999999998864 566666653211000000 00110000 0000 12357889999
Q ss_pred HHHHHHHcCCCCCCCCCCCceEEEEeec
Q psy5298 80 TREALADAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 80 ~~eAl~~agl~~~~~~~~~r~gv~iGt~ 107 (109)
+++||+++|+++ ++. -.+++|++
T Consensus 60 ~~~al~~agl~~-~~i----d~vi~~~~ 82 (319)
T PRK09352 60 AKKALEAAGIDP-EDI----DLIIVATT 82 (319)
T ss_pred HHHHHHHcCCCH-HHC----CEEEEEcC
Confidence 999999999875 222 24666665
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Back Show alignment and domain information
Probab=92.18 E-value=0.85 Score=32.86 Aligned_cols=33 Identities=27% Similarity=0.314 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeec
Q psy5298 70 SRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 70 ~~~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~ 107 (109)
+....|+..|+++||+++|+++ ++.+ .++++++
T Consensus 93 ~~~~~la~~Aa~~aL~~agl~~-~~Id----~li~~~~ 125 (372)
T PRK07515 93 SIQAEMGVAAARQALARAGRTA-EDID----AVIVACS 125 (372)
T ss_pred hhHHHHHHHHHHHHHHHcCCCH-HHCC----EEEEECC
Confidence 3457899999999999999985 2222 3566654
>PLN03172 chalcone synthase family protein; Provisional
Back Show alignment and domain information
Probab=92.04 E-value=0.39 Score=35.15 Aligned_cols=100 Identities=9% Similarity=0.055 Sum_probs=51.8
Q ss_pred cEEEEecceeCCCCC-CHHHHHHHHH---cC--CCceee-CCC-CCcCCCCcceeeecCC-C--CcC--C----CCChHh
Q psy5298 3 RVVVTGLGIVSPVGT-TRQSAWNAIK---EG--KACVSP-LSE-PEYSKLPCKIAARIEG-L--DLT--A----QFTQSK 65 (109)
Q Consensus 3 ~V~ItG~g~vs~lG~-~~~~~~~~l~---~g--~s~i~~-~~~-~~~~~~~~~~~~~i~~-~--~~~--~----~~~~~~ 65 (109)
+++|.|+|...|--. ..+++.+.+. +. .+.+.. ..+ +...++..++....++ + .+. . .+..+.
T Consensus 16 ~~~I~~igta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~p~~~~r~ 95 (393)
T PLN03172 16 PATILAIGKATPANCVSQADYPDYYFRITNSEHMTELKEKFKRMCDKSMIKKRYMHLTEEILKENPNMCAYMAPSLDARQ 95 (393)
T ss_pred CeEEEEEEecCCCccccHHHHHHHHHHHhcccCchHHHHHHHHHHHhcCCCceeEeccchhhhhCccccccCCCCHHHHH
Confidence 468999999888764 3444444443 21 111111 111 1234444444433111 1 111 1 122223
Q ss_pred hhcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceE-EEEeecC
Q psy5298 66 LRTMSRATAFSLIATREALADAKWNPQNEKQKERTG-VAVGTGM 108 (109)
Q Consensus 66 ~~~~~~~~~~al~a~~eAl~~agl~~~~~~~~~r~g-v~iGt~~ 108 (109)
.........|+..|+++||+++|+++ +.+. +++.|++
T Consensus 96 ~~~~~~a~~La~~Aa~~aL~~ag~~~------~dId~ii~~t~t 133 (393)
T PLN03172 96 DMVVVEVPKLGKEAAAKAIKEWGQPK------SKITHLVFCTTS 133 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCH------HHCCEEEEEccC
Confidence 33344466899999999999999875 3444 4556654
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction
Back Show alignment and domain information
Probab=91.79 E-value=0.51 Score=31.66 Aligned_cols=32 Identities=34% Similarity=0.387 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
...++..|+++||+++|+++ .+..++++|++.
T Consensus 7 ~~~l~~~A~~~al~~ag~~~-----~~i~~li~~~~~ 38 (254)
T cd00327 7 ASELGFEAAEQAIADAGLSK-----GPIVGVIVGTTG 38 (254)
T ss_pred HHHHHHHHHHHHHHHcCCCC-----CCceEEEEEECC
Confidence 56889999999999999874 367789999875
Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
>PLN03171 chalcone synthase-like protein; Provisional
Back Show alignment and domain information
Probab=91.60 E-value=0.47 Score=34.77 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=19.6
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCC
Q psy5298 69 MSRATAFSLIATREALADAKWNP 91 (109)
Q Consensus 69 ~~~~~~~al~a~~eAl~~agl~~ 91 (109)
......|+..|+++||+++|+++
T Consensus 105 ~~~a~~la~~Aa~~aL~~ag~~~ 127 (399)
T PLN03171 105 ADAVPELAAEAAKKAIAEWGRPA 127 (399)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCH
Confidence 34567799999999999999975
>PLN03170 chalcone synthase; Provisional
Back Show alignment and domain information
Probab=90.23 E-value=0.53 Score=34.55 Aligned_cols=99 Identities=9% Similarity=0.044 Sum_probs=50.5
Q ss_pred EEEEecceeCCCCCC-HHHHHHHHHcCC-----Cceee-CCC-CCcCCCCcceeeecCC---CCcC--C----CCChHhh
Q psy5298 4 VVVTGLGIVSPVGTT-RQSAWNAIKEGK-----ACVSP-LSE-PEYSKLPCKIAARIEG---LDLT--A----QFTQSKL 66 (109)
Q Consensus 4 V~ItG~g~vs~lG~~-~~~~~~~l~~g~-----s~i~~-~~~-~~~~~~~~~~~~~i~~---~~~~--~----~~~~~~~ 66 (109)
..|.|+|...|-=.= .+++.+-+.+-- +.... +.+ +...++..++....++ .++. . .+..+..
T Consensus 21 ~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~p~~~~r~~ 100 (401)
T PLN03170 21 ATVLAIGTATPANCVHQADYPDYYFRITKSEHMTELKEKFKRMCDKSQIRKRYMHLTEEYLAENPNMCAYMAPSLDARQD 100 (401)
T ss_pred eEEEEEeecCCCccccHHHHHHHHHHHccccCchhHHHHHHHHHHhCCCCceeEeccccchhhCccccccCCCCHHHHHH
Confidence 678899988887643 334444443311 11111 111 2334455554433211 1111 1 1122223
Q ss_pred hcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceE-EEEeecC
Q psy5298 67 RTMSRATAFSLIATREALADAKWNPQNEKQKERTG-VAVGTGM 108 (109)
Q Consensus 67 ~~~~~~~~~al~a~~eAl~~agl~~~~~~~~~r~g-v~iGt~~ 108 (109)
....-...|+..|+++||+++|+++ +.+. +++.|++
T Consensus 101 ~~~~~a~~La~~Aa~~AL~~ag~~~------~dId~lI~~T~T 137 (401)
T PLN03170 101 IVVVEVPKLGKAAAQKAIKEWGQPK------SKITHLVFCTTS 137 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCH------HHCCEEEEEccC
Confidence 3334455699999999999999875 3444 4556654
>PRK08256 lipid-transfer protein; Provisional
Back Show alignment and domain information
Probab=89.74 E-value=0.48 Score=34.47 Aligned_cols=34 Identities=29% Similarity=0.278 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEe
Q psy5298 71 RATAFSLIATREALADAKWNPQNEKQKERTGVAVG 105 (109)
Q Consensus 71 ~~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iG 105 (109)
....|+..|+++||+|||+++ ++++...+|.+++
T Consensus 21 ~~~~La~~A~~~Al~dAGl~~-~dID~~~~g~~~~ 54 (391)
T PRK08256 21 DYPDMAAEAGRAALADAGIDY-DAVQQAYVGYVYG 54 (391)
T ss_pred CHHHHHHHHHHHHHHHcCCCh-HHCCeeEEEEEeC
Confidence 357899999999999999986 4455555555554
>PLN03173 chalcone synthase; Provisional
Back Show alignment and domain information
Probab=87.76 E-value=0.73 Score=33.72 Aligned_cols=34 Identities=9% Similarity=0.020 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceE-EEEeecC
Q psy5298 69 MSRATAFSLIATREALADAKWNPQNEKQKERTG-VAVGTGM 108 (109)
Q Consensus 69 ~~~~~~~al~a~~eAl~~agl~~~~~~~~~r~g-v~iGt~~ 108 (109)
......|+..|+++||+++|+++ +.+. +++.|++
T Consensus 99 ~~~a~~La~~Aa~~AL~~ag~~~------~dId~li~~t~t 133 (391)
T PLN03173 99 VVEVPKLGKEAAAKAIKEWGQPK------SKITHLVFCTTS 133 (391)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCH------HHCCEEEEEccC
Confidence 34456799999999999999875 3343 4555554
>PRK06289 acetyl-CoA acetyltransferase; Provisional
Back Show alignment and domain information
Probab=85.51 E-value=1.3 Score=32.44 Aligned_cols=31 Identities=19% Similarity=0.138 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeec
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~ 107 (109)
...|+..|+++||+|||+++ ++++ ++++|++
T Consensus 26 ~~eLa~eA~~~AL~dAgl~~-~dID----~vi~g~~ 56 (403)
T PRK06289 26 FADLTREVVDGTLAAAGVDA-DDIE----VVHVGNF 56 (403)
T ss_pred HHHHHHHHHHHHHHHcCCCH-HHCC----EEEEEec
Confidence 46889999999999999986 3333 4666654
>PRK05790 putative acyltransferase; Provisional
Back Show alignment and domain information
Probab=84.94 E-value=1.3 Score=32.19 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeec
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~ 107 (109)
...|+..|+++||+|||+++ ++++ ++++|+.
T Consensus 26 ~~~La~~A~~~AL~dAgl~~-~dID----~vi~g~~ 56 (393)
T PRK05790 26 AVELGAIVIKAALERAGVPP-EQVD----EVIMGQV 56 (393)
T ss_pred HHHHHHHHHHHHHHHcCCCH-HHCC----eEEEEEe
Confidence 46788999999999999986 3333 4666653
>PRK06064 acetyl-CoA acetyltransferase; Provisional
Back Show alignment and domain information
Probab=84.80 E-value=1.4 Score=31.93 Aligned_cols=31 Identities=26% Similarity=0.255 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeec
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~ 107 (109)
...|+..|+++||+|+|+++ ++++ ++++|++
T Consensus 22 ~~eLa~~a~~~Al~dagl~~-~~Id----~vi~g~~ 52 (389)
T PRK06064 22 LRDLAVEAGLEALEDAGIDG-KDID----AMYVGNM 52 (389)
T ss_pred HHHHHHHHHHHHHHHcCCCH-HHCC----EEEEEec
Confidence 46788999999999999985 3222 5677765
>PRK12578 acetyl-CoA acetyltransferase; Provisional
Back Show alignment and domain information
Probab=82.33 E-value=2 Score=31.17 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeec
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~ 107 (109)
...|+..|+++||+|||+++ ++++ ++++|++
T Consensus 21 ~~eLa~~A~~~AL~dAgi~~-~dID----~vi~g~~ 51 (385)
T PRK12578 21 VQELAWESIKEALNDAGVSQ-TDIE----LVVVGST 51 (385)
T ss_pred HHHHHHHHHHHHHHHcCCCH-HHCC----EEEEEec
Confidence 46789999999999999985 3222 4666654
>PLN03168 chalcone synthase; Provisional
Back Show alignment and domain information
Probab=81.44 E-value=1.3 Score=32.34 Aligned_cols=37 Identities=11% Similarity=0.083 Sum_probs=25.9
Q ss_pred hcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 67 RTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 67 ~~~~~~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
....-...|+..|+++||+++|+++ + +=.-+|+.|++
T Consensus 96 ~~~~~a~~La~~Aa~~AL~~ag~~~-~----dId~lI~~T~T 132 (389)
T PLN03168 96 IVVVQVPKLAAEAAQKAIKEWGGRK-S----DITHIVFATTS 132 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCH-H----HCCEEEEECCC
Confidence 3344566788999999999999885 2 22345666665
>PRK07516 acetyl-CoA acetyltransferase; Provisional
Back Show alignment and domain information
Probab=80.54 E-value=2.6 Score=30.63 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeec
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~ 107 (109)
...|+..|+++||+++|+++ ++++ +|++|+.
T Consensus 22 ~~eL~~eA~~~AL~dAgl~~-~dId----~vi~g~~ 52 (389)
T PRK07516 22 LESLIVRVAREALAHAGIAA-GDVD----GIFLGHF 52 (389)
T ss_pred HHHHHHHHHHHHHHHcCCCH-HHCC----EEEEEEe
Confidence 35788999999999999985 3222 5677754
>KOG3308|consensus
Back Show alignment and domain information
Probab=80.14 E-value=2.7 Score=28.38 Aligned_cols=40 Identities=10% Similarity=0.099 Sum_probs=33.0
Q ss_pred CCcEEEEecceeCCCCCC-HHHHHHHHHcCCCceeeCCCCC
Q psy5298 1 MKRVVVTGLGIVSPVGTT-RQSAWNAIKEGKACVSPLSEPE 40 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~-~~~~~~~l~~g~s~i~~~~~~~ 40 (109)
|+++.|+|++++|.-|.+ .......++.|.+-|...+.+-
T Consensus 1 s~K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyK 41 (225)
T KOG3308|consen 1 SMKTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYK 41 (225)
T ss_pred CceEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccC
Confidence 678999999999999974 7788888888888777766553
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 109
d1j3na1 249
c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {
5e-26 d2gfva1 250
c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II {
7e-21 d2vbaa1 253
c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I {E
4e-19 d1e5ma1 250
c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II {
9e-19 d1ox0a1 256
c.95.1.1 (A:-5-251) Beta-ketoacyl-ACP synthase II
9e-15 d1tqya1 216
c.95.1.1 (A:3-218) Actinorhodin polyketide putativ
5e-13 d2ix4a1 270
c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II
3e-12 d1tqyb1 208
c.95.1.1 (B:2-209) Actinorhodin polyketide putativ
6e-10
>d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} Length = 249
Back Hide information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Thiolase-related
domain: Beta-ketoacyl-ACP synthase II
species: Thermus thermophilus [TaxId: 274]
Score = 94.8 bits (235), Expect = 5e-26
Identities = 42/108 (38%), Positives = 65/108 (60%), Gaps = 2/108 (1%)
Query: 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQ 60
M+RVVVTGLG ++P+G +++ A GK+ V P++ + S LP +IAA ++ D A
Sbjct: 1 MRRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEVDV-DPGAY 59
Query: 61 FTQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108
+ +LR + R ++LIA + AL DA P++ ER G VGTG+
Sbjct: 60 LDRKELRRLDRFVQYALIAAQLALEDAGLKPEDL-DPERVGTLVGTGI 106
>d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} Length = 250
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Thiolase-related
domain: Beta-ketoacyl-ACP synthase II
species: Escherichia coli [TaxId: 562]
Score = 81.8 bits (201), Expect = 7e-21
Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Query: 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQF 61
+RVVVTGLG++SPVG T +S W A+ G++ +S + + S K A ++ +
Sbjct: 2 RRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDII 61
Query: 62 TQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108
++ + R M + ++A +A+ D+ E R G A+G+G+
Sbjct: 62 SRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEE-NATRIGAAIGSGI 107
>d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} Length = 253
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Thiolase-related
domain: Beta-ketoacyl-ACP synthase I
species: Escherichia coli [TaxId: 562]
Score = 76.9 bits (188), Expect = 4e-19
Identities = 31/108 (28%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQ 60
MKR V+TGLGIVS +G +Q +++EG++ ++ E + S + + ++ T
Sbjct: 1 MKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVKLDT-TGL 59
Query: 61 FTQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108
+ +R MS A+ ++ ++ +A+ADA +P+ + R G+ G+G
Sbjct: 60 IDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGG 107
>d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} Length = 250
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Thiolase-related
domain: Beta-ketoacyl-ACP synthase II
species: Synechocystis sp. [TaxId: 1143]
Score = 76.1 bits (186), Expect = 9e-19
Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Query: 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQF 61
KRVVVTGLG ++P+G T Q W + EG+ + P++ + S C+ ++ D T
Sbjct: 2 KRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDATQFL 61
Query: 62 TQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108
+ + + M R F++ A+++A+ DAK + GV +GTG+
Sbjct: 62 DRKEAKRMDRFCHFAVCASQQAINDAKLVINEL-NADEIGVLIGTGI 107
>d1ox0a1 c.95.1.1 (A:-5-251) Beta-ketoacyl-ACP synthase II {Streptococcus pneumoniae [TaxId: 1313]} Length = 256
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Thiolase-related
domain: Beta-ketoacyl-ACP synthase II
species: Streptococcus pneumoniae [TaxId: 1313]
Score = 65.3 bits (158), Expect = 9e-15
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQ 60
+ RVVVTG G+ SP+G T + WN++ GK + +++ ++S AA I+
Sbjct: 8 LNRVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPFDKY 67
Query: 61 FTQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108
F + + ++L A +EA+ A + + ++R GV V +G+
Sbjct: 68 FVKKDTNRFDNYSLYALYAAQEAVNHANLDVEAL-NRDRFGVIVASGI 114
>d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} Length = 216
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Thiolase-related
domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA
species: Streptomyces coelicolor [TaxId: 1902]
Score = 60.1 bits (144), Expect = 5e-13
Identities = 25/92 (27%), Positives = 45/92 (48%)
Query: 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQF 61
+RVV+TG+G+ +P G + W + G+ +S + S ++AA + + F
Sbjct: 1 RRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRISFFDPSPYRSQVAAEADFDPVAEGF 60
Query: 62 TQSKLRTMSRATAFSLIATREALADAKWNPQN 93
+L M RA+ F++ REA A + +P
Sbjct: 61 GPRELDRMDRASQFAVACAREAFAASGLDPDT 92
>d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} Length = 270
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Thiolase-related
domain: Beta-ketoacyl-ACP synthase II
species: Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]
Score = 58.5 bits (140), Expect = 3e-12
Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 17/124 (13%)
Query: 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYS--------------KLPCK 47
+RVVVTGLG+V+P+G ++ W + +G+ + L+ + +L K
Sbjct: 1 RRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSK 60
Query: 48 IAARIEGLDLTAQFTQSKLRTMSRATAF---SLIATREALADAKWNPQNEKQKERTGVAV 104
+AA + +F ++ F ++ A EAL DA+W P E++KERTGV++
Sbjct: 61 VAAFVPYGSNPGEFDEALWLNSKAVANFIGYAVCAADEALRDAEWLPTEEEEKERTGVSI 120
Query: 105 GTGM 108
G G+
Sbjct: 121 GGGI 124
>d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} Length = 208
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Thiolase-related
domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB
species: Streptomyces coelicolor [TaxId: 1902]
Score = 52.0 bits (123), Expect = 6e-10
Identities = 14/46 (30%), Positives = 29/46 (63%)
Query: 4 VVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIA 49
V++TG+G+V+P G W+A+ +G+ + P++ + S+ P +A
Sbjct: 2 VLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFDVSRYPATLA 47
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 109
d2gfva1 250
Beta-ketoacyl-ACP synthase II {Escherichia coli [T
99.95 d1j3na1 249
Beta-ketoacyl-ACP synthase II {Thermus thermophilu
99.95 d1ox0a1 256
Beta-ketoacyl-ACP synthase II {Streptococcus pneum
99.94 d1tqyb1 208
Actinorhodin polyketide putative beta-ketoacyl syn
99.94 d1tqya1 216
Actinorhodin polyketide putative beta-ketoacyl syn
99.93 d1e5ma1 250
Beta-ketoacyl-ACP synthase II {Synechocystis sp. [
99.93 d2vbaa1 253
Beta-ketoacyl-ACP synthase I {Escherichia coli [Ta
99.89 d2ix4a1 270
Beta-ketoacyl-ACP synthase II {Thale cress (Arabid
99.72 d1ub7a1 172
Ketoacyl-ACP synthase III (FabH) {Thermus thermoph
89.06 d1u0ma1 200
Putative polyketide synthase SCO1206 {Streptomyces
87.23 d1bi5a1 235
Chalcone synthase {Alfalfa (Medicago sativa) [TaxI
85.85 d1teda_ 372
Polyketide synthase PKS18 {Mycobacterium tuberculo
85.32 d1mzja1 181
Priming beta-ketosynthase from the r1128 polyketid
82.63 d1u6ea1 184
Ketoacyl-ACP synthase III (FabH) {Mycobacterium tu
81.83
>d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]}
Back Hide information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Thiolase-related
domain: Beta-ketoacyl-ACP synthase II
species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=9.7e-28 Score=160.13 Aligned_cols=107 Identities=30% Similarity=0.543 Sum_probs=99.9
Q ss_pred CCcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCCCCcCCCCChHhhhcCCHHHHHHHHHH
Q psy5298 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQSKLRTMSRATAFSLIAT 80 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~al~a~ 80 (109)
.|||||||||+++|+|++++++|++|++|+++|+++++|+...++..+++.++++++.+.++++..+.+|++.++++.++
T Consensus 1 ~rrVaItG~G~vtp~G~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~l~aa 80 (250)
T d2gfva1 1 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGIVAG 80 (250)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSCCTTCSCCEEECCTTCCCTTTSCHHHHTTSCHHHHHHHHHH
T ss_pred CCeEEEECCeeECCCcCCHHHHHHHHHcCCCeeecCCcccccccCCccceecccchhhhhhhhHHHhhcCHHHHHHHHHH
Confidence 48999999999999999999999999999999999999988888999999999988877788999999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 81 REALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 81 ~eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
.|||+|||+.. ...+..|+||++|++.
T Consensus 81 ~~Al~dAg~~~-~~~~~~~~gv~~G~~~ 107 (250)
T d2gfva1 81 VQAMQDSGLEI-TEENATRIGAAIGSGI 107 (250)
T ss_dssp HHHHHHHTCCC-CTTTGGGEEEEEECSS
T ss_pred HHHHHhcCCCc-cccCccceEEEEeecc
Confidence 99999999985 6678899999999875
>d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Thiolase-related
domain: Beta-ketoacyl-ACP synthase II
species: Thermus thermophilus [TaxId: 274]
Probab=99.95 E-value=7e-28 Score=160.81 Aligned_cols=107 Identities=39% Similarity=0.636 Sum_probs=95.6
Q ss_pred CCcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCCCCcCCCCChHhhhcCCHHHHHHHHHH
Q psy5298 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQSKLRTMSRATAFSLIAT 80 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~al~a~ 80 (109)
|+||+|||||+++|+|+|++++|++|++|+++|+++++|+...++....+.++ +.+.++++++..+.+|+..++++.++
T Consensus 1 M~rVaItG~G~vsp~g~~~~e~w~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~l~aa 79 (249)
T d1j3na1 1 MRRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEVD-VDPGAYLDRKELRRLDRFVQYALIAA 79 (249)
T ss_dssp CCCEEEEEEEEEETTEESHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECCC-CCGGGTSCHHHHTTSCHHHHHHHHHH
T ss_pred CCcEEEECCEeECCCcCCHHHHHHHHHcCCCccccCCccccccCCcccccccc-ccccccccHHHHhhCCHHHHHHHHHH
Confidence 89999999999999999999999999999999999999987777777766654 55566788899999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCceEEEEeecCC
Q psy5298 81 REALADAKWNPQNEKQKERTGVAVGTGMI 109 (109)
Q Consensus 81 ~eAl~~agl~~~~~~~~~r~gv~iGt~~~ 109 (109)
+|||+|||+.+ +.+...|+||++|++.+
T Consensus 80 ~~Al~dAGl~~-~~~~~~~~gv~~Gs~~g 107 (249)
T d1j3na1 80 QLALEDAGLKP-EDLDPERVGTLVGTGIG 107 (249)
T ss_dssp HHHHHHHTCCG-GGSCGGGEEEEEECSSC
T ss_pred HHHHHHcCCCh-hHcCCccEEEEEEECCC
Confidence 99999999986 66778899999998764
>d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Thiolase-related
domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB
species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.94 E-value=4e-27 Score=153.18 Aligned_cols=106 Identities=25% Similarity=0.440 Sum_probs=97.6
Q ss_pred cEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCCCCcCCCCChHhhhcCCHHHHHHHHHHHH
Q psy5298 3 RVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQSKLRTMSRATAFSLIATRE 82 (109)
Q Consensus 3 ~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~al~a~~e 82 (109)
.|||||||+++|+|++++++|++|++|+++++++++|+...++..+.++++++++..+++++..+.|+|..++++.++.|
T Consensus 1 ~VvITG~G~vsp~g~~~~~~w~~L~~G~sgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 80 (208)
T d1tqyb1 1 SVLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDDFHAPDHIPGRLLPQTDPSTRLALTAADW 80 (208)
T ss_dssp CEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECTTTTGGGSSCCEEECCCSCCHHHHSCTTTGGGCCHHHHHHHHHHHH
T ss_pred CEEEEcceeECCCcCCHHHHHHHHHcCCCceecCcccCchhcccccccccccccccccCChhHhhccccccccccccccc
Confidence 38999999999999999999999999999999999998888888999999988877678888999999999999999999
Q ss_pred HHHHcCCCCCCCCCCCceEEEEeecCC
Q psy5298 83 ALADAKWNPQNEKQKERTGVAVGTGMI 109 (109)
Q Consensus 83 Al~~agl~~~~~~~~~r~gv~iGt~~~ 109 (109)
||+|||+++ ++...+++|+++|++.+
T Consensus 81 Al~~Ag~~~-~~~~~~~~g~~~g~~~g 106 (208)
T d1tqyb1 81 ALQDAKADP-ESLTDYDMGVVTANACG 106 (208)
T ss_dssp HHHHTTCCG-GGSCGGGEEEEEECSSC
T ss_pred cchhhhccc-ccccccccccccccccc
Confidence 999999986 66788999999998764
>d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Thiolase-related
domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA
species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.93 E-value=1.3e-26 Score=151.40 Aligned_cols=106 Identities=28% Similarity=0.538 Sum_probs=92.7
Q ss_pred CcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCCCCc-CCCCChHhhhcCCHHHHHHHHHH
Q psy5298 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDL-TAQFTQSKLRTMSRATAFSLIAT 80 (109)
Q Consensus 2 ~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~al~a~ 80 (109)
|||+|||||+++|+|.+++++|++|++|+++|++++.|+.+.....+...++ |+. .+.++++..+.+++..+|++.|+
T Consensus 1 rRVvItG~G~v~p~G~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~aa 79 (216)
T d1tqya1 1 RRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRISFFDPSPYRSQVAAEAD-FDPVAEGFGPRELDRMDRASQFAVACA 79 (216)
T ss_dssp CCEEEEEEEEEETTEESHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECCC-CCHHHHTCCHHHHHHSCHHHHHHHHHH
T ss_pred CeEEEEeceeECCCCCCHHHHHHHHHcCCCEeecCCccCCCccccccccccc-ccccccccChhhhcccCcchhhHHHHH
Confidence 7999999999999999999999999999999999998877666666655554 443 34689999999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCceEEEEeecCC
Q psy5298 81 REALADAKWNPQNEKQKERTGVAVGTGMI 109 (109)
Q Consensus 81 ~eAl~~agl~~~~~~~~~r~gv~iGt~~~ 109 (109)
+|||+|||+++ +.....|+|+++|++.+
T Consensus 80 ~~Al~dAg~~~-~~~~~~~~~~~~~~~~g 107 (216)
T d1tqya1 80 REAFAASGLDP-DTLDPARVGVSLGSAVA 107 (216)
T ss_dssp HHHHHHHTCCT-TTCCGGGEEEEEECSST
T ss_pred HHHHHHhcCCc-ccccccccccccccccc
Confidence 99999999996 56778999999998764
>d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Thiolase-related
domain: Beta-ketoacyl-ACP synthase II
species: Synechocystis sp. [TaxId: 1143]
Probab=99.93 E-value=1e-25 Score=149.75 Aligned_cols=107 Identities=34% Similarity=0.632 Sum_probs=98.6
Q ss_pred CCcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCCCCcCCCCChHhhhcCCHHHHHHHHHH
Q psy5298 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQSKLRTMSRATAFSLIAT 80 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~al~a~ 80 (109)
.|||+|||||+++|+|++++++|++|++|+++++++++|+...++..+.+.++.+++...++++..+.+|+..++++.++
T Consensus 1 ~~rVaItG~G~v~p~G~~~~~~w~~L~~G~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~a~ 80 (250)
T d1e5ma1 1 KKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDATQFLDRKEAKRMDRFCHFAVCAS 80 (250)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSCCTTSSCCEEECCCSCCGGGTSCHHHHHTSCHHHHHHHHHH
T ss_pred CCeEEEECCeeECCCCCCHHHHHHHHHcCCCeeccCCccccccccccccceeeecccccccchhhhhhcCcHHHHHHHHH
Confidence 48999999999999999999999999999999999999988888888899998777666788899999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 81 REALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 81 ~eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
.+||++||+.+ ..+..+|+++++|++.
T Consensus 81 ~~Al~~Agl~~-~~~~~~~~~v~~G~~~ 107 (250)
T d1e5ma1 81 QQAINDAKLVI-NELNADEIGVLIGTGI 107 (250)
T ss_dssp HHHHHHHTCCC-CTTTGGGEEEEEECSS
T ss_pred HHHHHHcCCCh-HhhcCCcceEEEEEee
Confidence 99999999985 6778899999999875
>d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Thiolase-related
domain: Beta-ketoacyl-ACP synthase I
species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=1e-23 Score=140.13 Aligned_cols=108 Identities=31% Similarity=0.516 Sum_probs=92.7
Q ss_pred CCcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCCCCcCCCCChHhhhcCCHHHHHHHHHH
Q psy5298 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQSKLRTMSRATAFSLIAT 80 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~al~a~ 80 (109)
|+||||||||+++|+|++++++|++|++|+++|++++.+....++....+.++ +.+.++++.+..+.+++..++.+.++
T Consensus 1 m~RVvITG~G~i~p~G~~~~~~w~~L~~G~sgi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (253)
T d2vbaa1 1 MKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLIDRKVVRFMSDASIYAFLSM 79 (253)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHHTCCCEEECHHHHHTTCSCCEEECCC-CCCTTSSCHHHHTTCCHHHHHHHHHH
T ss_pred CCcEEEEccEEECCCCCCHHHHHHHHHcCCCccccCCccccccCccccccccc-ccccccccchhhccchhhhhhhhHHH
Confidence 89999999999999999999999999999999999988766667776666665 34456678888999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCceEEEEeecCC
Q psy5298 81 REALADAKWNPQNEKQKERTGVAVGTGMI 109 (109)
Q Consensus 81 ~eAl~~agl~~~~~~~~~r~gv~iGt~~~ 109 (109)
.+|++++++......+.+|+|+++|++.+
T Consensus 80 ~~a~~~~~l~~~~~~~~~r~g~~~g~~~g 108 (253)
T d2vbaa1 80 EQAIADAGLSPEAYQNNPRVGLIAGSGGG 108 (253)
T ss_dssp HHHHHHHTCCHHHHTTCTTEEEEEECSSC
T ss_pred HHHHHHhhccchhccCCCCEEEEeccccc
Confidence 99999999874333567899999998753
>d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Thiolase-related
domain: Beta-ketoacyl-ACP synthase II
species: Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]
Probab=99.72 E-value=1.4e-17 Score=110.61 Aligned_cols=107 Identities=34% Similarity=0.638 Sum_probs=78.4
Q ss_pred CcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCc--C------------CCCcceeeecCCCCcCCCCChHh--
Q psy5298 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEY--S------------KLPCKIAARIEGLDLTAQFTQSK-- 65 (109)
Q Consensus 2 ~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~--~------------~~~~~~~~~i~~~~~~~~~~~~~-- 65 (109)
|||||||||+++|+|++++++|++|++|+++|++++.+.. . ..+....+.++.+.....+..+.
T Consensus 1 rRVvITG~G~vsP~G~~~ee~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (270)
T d2ix4a1 1 RRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSKVAAFVPYGSNPGEFDEALWL 80 (270)
T ss_dssp CCEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECCGGGGCCTTSCHHHHHHHHHTCSCCEEECCCBSSSTTSBCHHHHS
T ss_pred CeEEEECceeECCCcCCHHHHHHHHHcCCCeeccCChhhcccccccccccccccccccceeeeecccccCchhhhHHHhh
Confidence 7999999999999999999999999999999999886421 1 22344466666543333333332
Q ss_pred -hhcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 66 -LRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 66 -~~~~~~~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
...+++..+.++.+..+|++++++...+....++.++.++.+.
T Consensus 81 ~~~~~~~~~~~a~~a~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (270)
T d2ix4a1 81 NSKAVANFIGYAVCAADEALRDAEWLPTEEEEKERTGVSIGGGI 124 (270)
T ss_dssp CSTTCCHHHHHHHHHHHHHHHHTTCCCCSHHHHHTEEEEEEESS
T ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhccccccccccceEEeeccc
Confidence 3457888999999999999999976544445567777766543
>d1ub7a1 c.95.1.2 (A:2-173) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Ketoacyl-ACP synthase III (FabH)
species: Thermus thermophilus [TaxId: 274]
Probab=89.06 E-value=0.45 Score=28.21 Aligned_cols=20 Identities=10% Similarity=0.072 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHcCCCC
Q psy5298 72 ATAFSLIATREALADAKWNP 91 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~ 91 (109)
...|+..|+++||+++|+++
T Consensus 49 ~~~ma~~Aa~~aL~~agi~~ 68 (172)
T d1ub7a1 49 TSDLAFKAVEDLLRRHPGAL 68 (172)
T ss_dssp HHHHHHHHHHHHHHHSTTTT
T ss_pred ccHHHHHHHHHHHhhcCccc
Confidence 56889999999999999986
>d1u0ma1 c.95.1.2 (A:2-201) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Putative polyketide synthase SCO1206
species: Streptomyces coelicolor [TaxId: 1902]
Probab=87.23 E-value=0.27 Score=29.95 Aligned_cols=20 Identities=25% Similarity=0.147 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHcCCCC
Q psy5298 72 ATAFSLIATREALADAKWNP 91 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~ 91 (109)
...|+..|+++||+++|+++
T Consensus 75 a~~la~~Aa~~aL~~ag~~~ 94 (200)
T d1u0ma1 75 AKSRVPAVIQRALDDAELLA 94 (200)
T ss_dssp HHHHHHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHHHHHHHcCCCh
Confidence 56799999999999999986
>d1bi5a1 c.95.1.2 (A:1-235) Chalcone synthase {Alfalfa (Medicago sativa) [TaxId: 3879]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Chalcone synthase
species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=85.85 E-value=0.33 Score=30.36 Aligned_cols=20 Identities=10% Similarity=-0.031 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHcCCCC
Q psy5298 72 ATAFSLIATREALADAKWNP 91 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~ 91 (109)
...|+..|+++||+++|+++
T Consensus 102 ~~~la~~Aa~~aL~~a~~~~ 121 (235)
T d1bi5a1 102 VPRLGKEAAVKAIKEWGQPK 121 (235)
T ss_dssp HHHHHHHHHHHHHHHHCSCG
T ss_pred HHHHHHHHHHHHHHHcCCCh
Confidence 56799999999999999985
>d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium tuberculosis [TaxId: 1773]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Polyketide synthase PKS18
species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.32 E-value=0.41 Score=31.64 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEe
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTGVAVG 105 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iG 105 (109)
..-|+..|+++||+++|+++ +.+.++|-
T Consensus 92 ~~~la~~Aa~~aL~~ag~~~------~dId~lI~ 119 (372)
T d1teda_ 92 AVPLAVDVSKRALAGLPYRA------AEIGLLVL 119 (372)
T ss_dssp HHHHHHHHHHHHHTTCCCCG------GGEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCH------HHCCEEEE
Confidence 55799999999999999986 56666554
>d1mzja1 c.95.1.2 (A:3-183) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway
species: Streptomyces sp. r1128 [TaxId: 140437]
Probab=82.63 E-value=0.67 Score=27.62 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHcCCCC
Q psy5298 72 ATAFSLIATREALADAKWNP 91 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~ 91 (109)
...|+..|+++||+++|+++
T Consensus 58 ~~~ma~~Aa~~aL~~a~~~~ 77 (181)
T d1mzja1 58 IQVMGVAASRRALEHAGVDP 77 (181)
T ss_dssp HHHHHHHHHHHHHHHHTCCG
T ss_pred HHHHhHHHHHhhhhhccCCh
Confidence 56799999999999999986
