Psyllid ID: psy5300

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------
Protein Sequence
MNCSELIYIANLSLFDNISREPCLQHAPQLTSSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFVIGAWILSALCSLPQIGT
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHcccHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MNCSELIYIANlslfdnisrepclqhapqltssaSSRAIILAILAVLSFVGNVLTIISIRKNrvhrglrqhswNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFlavrypmksistssrcCKFVIGAWILSALcslpqigt
Flexible Loop (DISEMBL)
MNCSELIYIANLSLFDNISREPCLQHAPQLTSSASSRAIILAILAVLSFVGNVLTIISIRknrvhrglrqHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFVIGAWILSALCSLPQIGT
Low Complexity Region (SEG)
MNCSELIYIANLSLFDNISREPCLQHAPQltssassraiilailavlsFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFVIGAWILSALCSLPQIGT
Disordered region (IsUnstruct)
****ELIYIANLSLFDNISREPCLQHAPQL****SSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFVIGAWILSALCSL*****
Disordered Region (DISOPRED)
*******YIANLSLFDNISREPCLQHAPQLTSSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFVIGAWILSALCSLPQIGT
Disordered Region (DISEMBL)
MNCSELIYIANLSLFDNISREPCLQHAPQLTSSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFVIGAWILSALCSLPQIGT
Disordered Region (DISPRO)
************************QHAPQLTSSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFVIGAWILSALCSLPQIGT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNCSELIYIANLSLFDNISREPCLQHAPQLTSSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFVIGAWILSALCSLPQIGT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	177	2.2.26 [Sep-21-2011]
Q2V2K5	407	Gonadotropin-releasing ho	N/A	N/A	0.881	0.383	0.398	3e-23
O42329	379	Gonadotropin-releasing ho	N/A	N/A	0.915	0.427	0.315	3e-17
Q75W84	420	Annetocin receptor OS=Eis	N/A	N/A	0.706	0.297	0.358	9e-17
P32237	328	Gonadotropin-releasing ho	N/A	N/A	0.824	0.445	0.308	3e-16
P32236	328	Gonadotropin-releasing ho	yes	N/A	0.824	0.445	0.308	5e-16
Q19PY9	328	Gonadotropin-releasing ho	N/A	N/A	0.824	0.445	0.308	5e-16
Q95MH6	379	Gonadotropin-releasing ho	N/A	N/A	0.796	0.372	0.351	1e-15
P49922	328	Gonadotropin-releasing ho	yes	N/A	0.824	0.445	0.315	1e-15
Q95MG6	380	Gonadotropin-releasing ho	yes	N/A	0.796	0.371	0.344	3e-15
Q7YW31	397	Cephalotocin receptor 1 O	N/A	N/A	0.762	0.340	0.342	5e-15

>sp|Q2V2K5|GNRHR_OCTVU Gonadotropin-releasing hormone receptor OS=Octopus vulgaris GN=GNRHR PE=2 SV=1

 Score =  107 bits (268), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 96/168 (57%), Gaps = 12/168 (7%)

Query: 11  NLSLFDN----ISREPCLQHAPQLTSSASSRAIILAILAVLSFVGNVLTIISIRKNRVHR 66
           N S+F+N    I+  P L  AP+  +   S+  +L  + V+SF GN L II I + R  R
Sbjct: 5   NDSMFNNMTYNITSTP-LPDAPRFDNVYVSKLCVLGTVFVISFFGNTLVIIQIFRIRGSR 63

Query: 67  GLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLY 126
              Q       +LIL+L++ADL V+ F +  + +WS TVEWL GN  CK+ K+L +F L+
Sbjct: 64  STIQ-------SLILNLAIADLMVSFFNILMDIIWSATVEWLAGNTMCKIMKYLTVFGLH 116

Query: 127 LSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFVIGAWILSALCSLPQ 174
           LST+I V I +DR  A+  PM       R    +  AW+LSA+ S+PQ
Sbjct: 117 LSTYITVSIALDRCFAILSPMSRSKAPLRVRIMITMAWVLSAIFSIPQ 164

Receptor for gonadotropin releasing hormone (GnRH) that mediates the action of GnRH to stimulate the secretion of the gonadotropic hormones luteinizing hormone (LH) and follicle-stimulating hormone (FSH). This receptor mediates its action by association with G-proteins that activate a phosphatidylinositol-calcium second messenger system. Ligand interaction triggers steroidogenesis in spermatozoa and follicles. Appears to be involved in contraction of the radula retractor muscle.
Octopus vulgaris (taxid: 6645)

>sp|O42329|GNRR2_CLAGA Gonadotropin-releasing hormone II receptor OS=Clarias gariepinus PE=2 SV=2

 Score = 87.8 bits (216), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 93/168 (55%), Gaps = 6/168 (3%)

Query: 9   IANLSLFDNISREPCLQ-HAPQLTSSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRG 67
           + N S+ +     P L+   P  T++A  R     +L V +   N+  ++S+ + R  R 
Sbjct: 16  LDNSSVLNVSVSPPVLKWETPTFTTAARFRVAATLVLFVFAAASNLSVLLSVTRGRGRR- 74

Query: 68  LRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYL 127
           L  H    +  LI  L+ ADL +T   +  +AVW+ TV+W  G+  CKL  FL++F+++ 
Sbjct: 75  LASH----LRPLIASLASADLVMTFVVMPLDAVWNVTVQWYAGDAMCKLMCFLKLFAMHS 130

Query: 128 STFILVLIGIDRFLAVRYPMKSISTSSRCCKFVIGAWILSALCSLPQI 175
           + FILV++ +DR  A+ +P+ ++    R  + ++ AWILS L + PQ+
Sbjct: 131 AAFILVVVSLDRHHAILHPLDTLDAGRRNRRMLLTAWILSLLLASPQL 178

Receptor for gonadotropin releasing hormone II (GnRH II). This receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Clarias gariepinus (taxid: 13013)

>sp|Q75W84|ANR_EISFO Annetocin receptor OS=Eisenia foetida GN=anr PE=2 SV=1

 Score = 86.3 bits (212), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 80/131 (61%), Gaps = 6/131 (4%)

Query: 46  VLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTV 105
           +L+ VGN   +  I     H+ L +     +YT+I HLS ADLFV +F L  + +W  T 
Sbjct: 59  ILTVVGNAAVLAMIVSLSRHKDLGR-----MYTMIGHLSCADLFVAIFNLLPQLLWDVTH 113

Query: 106 EWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSIS-TSSRCCKFVIGAW 164
            +  G + CKL K++Q+ ++Y S ++L+   +DR+ A+ +PM+S + TS+     VIGAW
Sbjct: 114 RFRGGRVLCKLVKYVQVVAMYASAYVLMSTAVDRYTAICHPMRSHTWTSTTAHYLVIGAW 173

Query: 165 ILSALCSLPQI 175
           +L+ + ++PQ+
Sbjct: 174 VLALVFAVPQL 184

Receptor for annetocin. Activation by annetocin may induce egg-laying behavior through calcium-dependent signaling.

Eisenia foetida (taxid: 6396)

>sp|P32237|GNRHR_SHEEP Gonadotropin-releasing hormone receptor OS=Ovis aries GN=GNRHR PE=2 SV=1

 Score = 84.7 bits (208), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 91/149 (61%), Gaps = 3/149 (2%)

Query: 28  PQLTSSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVAD 87
           P LT S   R  +   L +LS + N   ++ ++ N   R  ++   + +  L+ HL++A+
Sbjct: 29  PTLTLSGKIRVTVTFFLFLLSTIFNTSFLLKLQ-NWTQRKEKRKKLSKMKVLLKHLTLAN 87

Query: 88  LFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPM 147
           L  T+  +  + +W+ TV+W  G + CK+  +L++FS+Y   F++V+I +DR LA+  P+
Sbjct: 88  LLETLIVMPLDGMWNITVQWYAGELLCKVLSYLKLFSMYAPAFMMVVISLDRSLAITRPL 147

Query: 148 KSISTSSRCCKFVIG-AWILSALCSLPQI 175
            ++ ++S+  +F+IG AW+LS++ + PQ+
Sbjct: 148 -AVKSNSKLGQFMIGLAWLLSSIFAGPQL 175

Receptor for gonadotropin releasing hormone (GnRH) that mediates the action of GnRH to stimulate the secretion of the gonadotropic hormones luteinizing hormone (LH) and follicle-stimulating hormone (FSH). This receptor mediates its action by association with G-proteins that activate a phosphatidylinositol-calcium second messenger system.

Ovis aries (taxid: 9940)

>sp|P32236|GNRHR_BOVIN Gonadotropin-releasing hormone receptor OS=Bos taurus GN=GNRHR PE=2 SV=1

 Score = 84.0 bits (206), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 91/149 (61%), Gaps = 3/149 (2%)

Query: 28  PQLTSSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVAD 87
           P LT S   R  +   L +LS + N   ++ + +N   R  ++   + +  L+ HL++A+
Sbjct: 29  PTLTLSGKIRVTVTFFLFLLSTIFNTSFLLKL-QNWTQRKEKRKKLSRMKLLLKHLTLAN 87

Query: 88  LFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPM 147
           L  T+  +  + +W+ TV+W  G + CK+  +L++FS+Y   F++V+I +DR LA+  P+
Sbjct: 88  LLETLIVMPLDGMWNITVQWYAGELLCKVLSYLKLFSMYAPAFMMVVISLDRSLAITKPL 147

Query: 148 KSISTSSRCCKFVIG-AWILSALCSLPQI 175
            ++ ++S+  +F+IG AW+LS++ + PQ+
Sbjct: 148 -AVKSNSKLGQFMIGLAWLLSSIFAGPQL 175

Receptor for gonadotropin releasing hormone (GnRH) that mediates the action of GnRH to stimulate the secretion of the gonadotropic hormones luteinizing hormone (LH) and follicle-stimulating hormone (FSH). This receptor mediates its action by association with G-proteins that activate a phosphatidylinositol-calcium second messenger system.

Bos taurus (taxid: 9913)

>sp|Q19PY9|GNRHR_BOSMU Gonadotropin-releasing hormone receptor OS=Bos mutus grunniens GN=GNRHR PE=3 SV=1

 Score = 84.0 bits (206), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 91/149 (61%), Gaps = 3/149 (2%)

Query: 28  PQLTSSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVAD 87
           P LT S   R  +   L +LS + N   ++ + +N   R  ++   + +  L+ HL++A+
Sbjct: 29  PTLTLSGKIRVTVTFFLFLLSTIFNTSFLLKL-QNWTQRKEKRKKLSRMKLLLKHLTLAN 87

Query: 88  LFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPM 147
           L  T+  +  + +W+ TV+W  G + CK+  +L++FS+Y   F++V+I +DR LA+  P+
Sbjct: 88  LLETLIVMPLDGMWNITVQWYAGELLCKVLSYLKLFSMYAPAFMMVVISLDRSLAITKPL 147

Query: 148 KSISTSSRCCKFVIG-AWILSALCSLPQI 175
            ++ ++S+  +F+IG AW+LS++ + PQ+
Sbjct: 148 -AVKSNSKLGQFMIGLAWLLSSIFAGPQL 175

Receptor for gonadotropin releasing hormone (GnRH) that mediates the action of GnRH to stimulate the secretion of the gonadotropic hormones luteinizing hormone (LH) and follicle-stimulating hormone (FSH). This receptor mediates its action by association with G-proteins that activate a phosphatidylinositol-calcium second messenger system.

Bos mutus grunniens (taxid: 30521)

>sp|Q95MH6|GNRR2_CHLAE Gonadotropin-releasing hormone II receptor OS=Chlorocebus aethiops GN=GNRHR2 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 85/148 (57%), Gaps = 7/148 (4%)

Query: 28  PQLTSSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVAD 87
           P  +++A  R  +  +L V S  GN+  + S+ + +  + LR    + V TL  HL+ AD
Sbjct: 31  PTFSTAAKVRVGVTIVLFVSSAGGNLAVLWSVTRPQPSQ-LRP---SPVRTLFAHLAAAD 86

Query: 88  LFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPM 147
           L VT   +  +A W+ TV+WL G+++C+   FL++ ++Y + F+ V+IG+DR  AV  P+
Sbjct: 87  LLVTFVVMPLDATWNITVQWLAGDIACRTLMFLKLMAMYSAAFLPVVIGLDRQAAVLNPL 146

Query: 148 KSISTSSRCCKFVIGAWILSALCSLPQI 175
            S    S   K +  AW LS L +LPQ+
Sbjct: 147 GS---RSGVRKLLGAAWGLSFLLALPQL 171

Receptor for gonadotropin releasing hormone II (GnRH II). This receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Chlorocebus aethiops (taxid: 9534)

>sp|P49922|GNRHR_PIG Gonadotropin-releasing hormone receptor OS=Sus scrofa GN=GNRHR PE=2 SV=2

 Score = 82.8 bits (203), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 88/149 (59%), Gaps = 3/149 (2%)

Query: 28  PQLTSSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVAD 87
           P LT S   R  +   L +LS   N   ++ ++K    R  +    + +  L+ HL++A+
Sbjct: 29  PTLTLSGKIRVTVTFFLFLLSTAFNASFLLKLQK-WTQRKEKGKKLSRMKVLLKHLTLAN 87

Query: 88  LFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPM 147
           L  T+  +  + +W+ TV+W  G   CK+  +L++FS+Y   F++V+I +DR LA+  P+
Sbjct: 88  LLETLIVMPLDGMWNITVQWYAGEFLCKVLSYLKLFSMYAPAFMMVVISLDRSLAITRPL 147

Query: 148 KSISTSSRCCKFVIG-AWILSALCSLPQI 175
            ++ ++SR  +F+IG AW+LS++ + PQ+
Sbjct: 148 -AVKSNSRLGRFMIGLAWLLSSIFAGPQL 175

Receptor for gonadotropin releasing hormone (GnRH) that mediates the action of GnRH to stimulate the secretion of the gonadotropic hormones luteinizing hormone (LH) and follicle-stimulating hormone (FSH). This receptor mediates its action by association with G-proteins that activate a phosphatidylinositol-calcium second messenger system.

Sus scrofa (taxid: 9823)

>sp|Q95MG6|GNRR2_CALJA Gonadotropin-releasing hormone II receptor OS=Callithrix jacchus GN=GNRHR2 PE=2 SV=1

 Score = 81.3 bits (199), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 84/148 (56%), Gaps = 7/148 (4%)

Query: 28  PQLTSSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVAD 87
           P  +++A  R  +  +L V S  GN+  + S+ + +  + LR    + V  L  HL+ AD
Sbjct: 31  PTFSTAAKVRVGVTIVLFVSSAGGNLAVLWSVTRPQPSQ-LRP---SPVRRLFAHLAAAD 86

Query: 88  LFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPM 147
           L VT   +  +A W+ TV+WL G+++C+   FL++ ++Y + F+ V+IG+DR  AV  P+
Sbjct: 87  LLVTFVVMPLDATWNITVQWLAGDIACRTLMFLKLMAMYAAAFLPVVIGLDRQAAVLNPL 146

Query: 148 KSISTSSRCCKFVIGAWILSALCSLPQI 175
            S    S   K +  AW LS L +LPQ+
Sbjct: 147 GS---RSGVRKLLGAAWGLSFLLALPQL 171

Receptor for gonadotropin releasing hormone II (GnRH II). This receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Callithrix jacchus (taxid: 9483)

>sp|Q7YW31|CTR1_OCTVU Cephalotocin receptor 1 OS=Octopus vulgaris GN=CTR1 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 83/143 (58%), Gaps = 8/143 (5%)

Query: 34  ASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVF 93
           A++  I LA++ +++ +GN + +I++ + R  +  R H        ILHLSV DLFV  F
Sbjct: 45  ANAEVITLAVVIIITVIGNSIVLITLFQRR-KKLTRMH------LFILHLSVTDLFVAFF 97

Query: 94  CLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSIS-T 152
               + +W  T  +L  ++ C+L  +LQ  ++Y S+++LV   IDR+ A+ +P+ S   T
Sbjct: 98  NNLPQMIWDITFLFLGTDLLCRLVTYLQSVAMYASSYVLVATAIDRYFAICHPLSSHKWT 157

Query: 153 SSRCCKFVIGAWILSALCSLPQI 175
           ++R    V  AW+LS L S PQ+
Sbjct: 158 TARVHVMVFIAWMLSFLFSTPQL 180

Acts as a receptor for cephalotocin.

Octopus vulgaris (taxid: 6645)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
383860410	414	PREDICTED: gonadotropin-releasing hormon	0.841	0.359	0.640	7e-53
380019458	406	PREDICTED: gonadotropin-releasing hormon	0.943	0.411	0.586	1e-51
307206489	423	Gonadotropin-releasing hormone II recept	0.909	0.380	0.602	2e-51
350401174	410	PREDICTED: gonadotropin-releasing hormon	0.943	0.407	0.574	4e-50
221139712	403	corazonin receptor [Apis mellifera] gi|6	0.943	0.414	0.557	3e-49
340720669	410	PREDICTED: gonadotropin-releasing hormon	0.943	0.407	0.568	7e-49
197209910	437	neuropeptide receptor A21 [Bombyx mori]	0.983	0.398	0.540	1e-48
322797448	233	hypothetical protein SINV_01333 [Solenop	0.841	0.639	0.607	2e-47
170062994	265	conserved hypothetical protein [Culex qu	0.858	0.573	0.572	3e-46
38230726	435	corazonin receptor [Manduca sexta]	0.858	0.349	0.585	3e-45

>gi|383860410|ref|XP_003705682.1| PREDICTED: gonadotropin-releasing hormone receptor-like [Megachile rotundata]

 Score =  211 bits (538), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 98/153 (64%), Positives = 127/153 (83%), Gaps = 4/153 (2%)

Query: 23  CLQHAPQLTSSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILH 82
           CL+HAPQLT++   + I+LA++A LSFV NV TI SI +NR     RQHSW+ +YTLILH
Sbjct: 55  CLEHAPQLTNATFLKVIVLAVMACLSFVANVATIWSIARNR----RRQHSWSAIYTLILH 110

Query: 83  LSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLA 142
           L+VADL VTVFC+ GEA+WSY+V+W+WGN++CK+FKFLQ+FSLYLSTF+LVLIG+DRF+A
Sbjct: 111 LAVADLLVTVFCIGGEAMWSYSVQWIWGNLACKMFKFLQVFSLYLSTFVLVLIGVDRFVA 170

Query: 143 VRYPMKSISTSSRCCKFVIGAWILSALCSLPQI 175
           VRYPMK ++T+ RC + V  AWILS + + PQI
Sbjct: 171 VRYPMKGLNTAHRCIRLVAVAWILSFVLATPQI 203

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019458|ref|XP_003693622.1| PREDICTED: gonadotropin-releasing hormone receptor-like [Apis florea]

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 102/174 (58%), Positives = 133/174 (76%), Gaps = 7/174 (4%)

Query: 2   NCSELIYIANLSLFDNISREPCLQHAPQLTSSASSRAIILAILAVLSFVGNVLTIISIRK 61
           N SEL +  +     NI+   CLQHAP  T S   +++IL I+AV+S + N+ TI SI +
Sbjct: 38  NTSELSHPFHSYNLKNIT---CLQHAPHATISTLFKSLILTIMAVISMLANLATIYSIVR 94

Query: 62  NRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQ 121
            R     R HSW+ +YTLILHL++ADLFV+VFC+ GEA+W+YTVEW+WGN++CKLFKF Q
Sbjct: 95  CR----RRHHSWSAIYTLILHLAIADLFVSVFCIGGEAMWNYTVEWIWGNVACKLFKFSQ 150

Query: 122 MFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFVIGAWILSALCSLPQI 175
           +FSLYLSTF+LVLIG+DRF A+RYPMK ++T+ RC KF+I AWILS + SLPQI
Sbjct: 151 VFSLYLSTFVLVLIGVDRFFAIRYPMKGMNTADRCLKFIIVAWILSFVLSLPQI 204

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206489|gb|EFN84515.1| Gonadotropin-releasing hormone II receptor [Harpegnathos saltator]

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 100/166 (60%), Positives = 126/166 (75%), Gaps = 5/166 (3%)

Query: 11  NLSLFDNISREPCLQHAPQLTSSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQ 70
           NLS  D      CL+HAP+LT S   + IILA+++VLS + N+ TI SI KNR     R+
Sbjct: 53  NLSEIDPHENITCLEHAPKLTDSVYLKVIILAVISVLSLLCNLATIYSITKNR-----RK 107

Query: 71  HSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTF 130
              + +YTL+LHL++ADL VTVFCLAGEA+WSY V WLWGN +CK FKFLQMFSLYLSTF
Sbjct: 108 QRGSTIYTLLLHLTIADLLVTVFCLAGEAIWSYNVAWLWGNAACKFFKFLQMFSLYLSTF 167

Query: 131 ILVLIGIDRFLAVRYPMKSISTSSRCCKFVIGAWILSALCSLPQIG 176
           +LVLIG+DRF+AVRYPMK +S + +C +FV+ AWILS + +LPQI 
Sbjct: 168 VLVLIGVDRFVAVRYPMKGLSMNQKCSRFVLFAWILSCILALPQIA 213

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401174|ref|XP_003486073.1| PREDICTED: gonadotropin-releasing hormone receptor-like [Bombus impatiens]

 Score =  202 bits (514), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 100/174 (57%), Positives = 134/174 (77%), Gaps = 7/174 (4%)

Query: 2   NCSELIYIANLSLFDNISREPCLQHAPQLTSSASSRAIILAILAVLSFVGNVLTIISIRK 61
           N SE + + +  + +N++   CL HAPQLT     + I+L+++A+LSFV NV TI SI  
Sbjct: 43  NISEFVQLISTGVLNNVT---CLNHAPQLTRVVVVKVIVLSVIAILSFVANVATIYSIAI 99

Query: 62  NRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQ 121
           NR     +QH+W+ +YTLILHL+VADL VTVFC+ G+A+WSYTV W++GN++CKLFKF Q
Sbjct: 100 NR----RKQHAWSAIYTLILHLTVADLLVTVFCMVGDAMWSYTVAWIFGNVACKLFKFAQ 155

Query: 122 MFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFVIGAWILSALCSLPQI 175
           +FSLYLSTFILVLIG+DRF A+RYPMK ++T+ RC KFV+ AWILS + + PQI
Sbjct: 156 VFSLYLSTFILVLIGVDRFFAIRYPMKGMNTADRCLKFVVLAWILSFIFASPQI 209

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|221139712|ref|NP_001137393.1| corazonin receptor [Apis mellifera] gi|62462050|gb|AAX83120.1| corazonin receptor [Apis mellifera]

 Score =  199 bits (506), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 97/174 (55%), Positives = 130/174 (74%), Gaps = 7/174 (4%)

Query: 2   NCSELIYIANLSLFDNISREPCLQHAPQLTSSASSRAIILAILAVLSFVGNVLTIISIRK 61
           N SEL +  +     NI+   CL+ AP    +   +++IL I+AV+S + N+ TI SI +
Sbjct: 36  NTSELSHPFHSYNLKNIT---CLEQAPHSNGNTLFKSLILTIMAVVSILANLATIYSIVR 92

Query: 62  NRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQ 121
            R     R HSW+ +YTLIL L+VADLFV+VFC+ GEA+W+YTVEW+WGN++CKLFKF Q
Sbjct: 93  CR----RRHHSWSAIYTLILQLAVADLFVSVFCIGGEAMWNYTVEWIWGNVACKLFKFFQ 148

Query: 122 MFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFVIGAWILSALCSLPQI 175
           +FSLYLSTF+LVLIG+DRF A+RYPMK ++T+ RC KF++ AWILS + SLPQI
Sbjct: 149 VFSLYLSTFVLVLIGVDRFFAIRYPMKGMNTADRCLKFIVAAWILSFVLSLPQI 202

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720669|ref|XP_003398755.1| PREDICTED: gonadotropin-releasing hormone receptor-like [Bombus terrestris]

 Score =  198 bits (503), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 99/174 (56%), Positives = 130/174 (74%), Gaps = 7/174 (4%)

Query: 2   NCSELIYIANLSLFDNISREPCLQHAPQLTSSASSRAIILAILAVLSFVGNVLTIISIRK 61
           N SE   + +  + +N++   CL HAPQLT     + I+L+++A+ SFV NV TI SI  
Sbjct: 43  NISEFAQLISTGVLNNVT---CLNHAPQLTRVVVVKVIVLSVIAIFSFVANVATIYSIAI 99

Query: 62  NRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQ 121
           NR     +QH+W+ +YTLILHL+VADL VTVFC+ G+AVW YTV W++GN++CKLFKF Q
Sbjct: 100 NR----RKQHAWSAIYTLILHLTVADLLVTVFCMVGDAVWGYTVAWIFGNVACKLFKFAQ 155

Query: 122 MFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFVIGAWILSALCSLPQI 175
           +FSLYLSTFILVLIG+DRF A+RYPMK  +T+ RC KFV+ AWILS + + PQI
Sbjct: 156 VFSLYLSTFILVLIGVDRFFAIRYPMKGTNTADRCLKFVVLAWILSFIFASPQI 209

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|197209910|ref|NP_001127719.1| neuropeptide receptor A21 [Bombyx mori] gi|195947012|dbj|BAG68420.1| neuropeptide receptor A21 [Bombyx mori]

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 94/174 (54%), Positives = 130/174 (74%)

Query: 1   MNCSELIYIANLSLFDNISREPCLQHAPQLTSSASSRAIILAILAVLSFVGNVLTIISIR 60
           +N ++   I   S   N ++  CL+HAP LT +   RA +L+ +A LSF+GNV TIISIR
Sbjct: 51  LNDTKTDDILGRSFIYNDTQLTCLEHAPVLTKTTVIRASVLSAMAFLSFIGNVATIISIR 110

Query: 61  KNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFL 120
           +++  RG  + SW  +Y+LI  LS+ADL VT+FC+AGEA WS+ V+W  GN+ CKLFKFL
Sbjct: 111 RSKRCRGRARPSWTAIYSLIFQLSIADLLVTIFCIAGEAAWSFAVQWYAGNIGCKLFKFL 170

Query: 121 QMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFVIGAWILSALCSLPQ 174
           QM +LYLSTF+LVLIG+DR+LAV+YPMKS++T++R  + VI AW+LS + S+PQ
Sbjct: 171 QMLALYLSTFVLVLIGVDRWLAVKYPMKSMATATRSGRLVIIAWVLSVILSIPQ 224

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322797448|gb|EFZ19519.1| hypothetical protein SINV_01333 [Solenopsis invicta]

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 93/153 (60%), Positives = 118/153 (77%), Gaps = 4/153 (2%)

Query: 23  CLQHAPQLTSSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILH 82
           CL+HAPQLT +   R I+L +++VLS VGN+ TI SI KNR  R       + VYTLILH
Sbjct: 55  CLEHAPQLTRAIYLRVIVLTVMSVLSLVGNLATIYSITKNRRKR----IGCSTVYTLILH 110

Query: 83  LSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLA 142
           LSVADL VTVFCL GEA+WSY V WLWGN +CK FKFLQ+FSLYLSTF+LVLIG+DRF+A
Sbjct: 111 LSVADLLVTVFCLTGEAIWSYNVAWLWGNAACKCFKFLQLFSLYLSTFVLVLIGVDRFIA 170

Query: 143 VRYPMKSISTSSRCCKFVIGAWILSALCSLPQI 175
           VRYPMK +++S +C ++V   W+L+ + + PQ+
Sbjct: 171 VRYPMKGLNSSKKCSRYVAFTWLLALVLATPQV 203

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170062994|ref|XP_001866912.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167880760|gb|EDS44143.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 87/152 (57%), Positives = 122/152 (80%)

Query: 23  CLQHAPQLTSSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILH 82
           CL HAP+L+ S   R ++LA +A++S +GN+ T+ SI++NR  R L +H+W+ +Y+LI H
Sbjct: 106 CLPHAPKLSRSGVIRVLVLAAMAIVSLLGNIATMWSIQRNRKSRRLARHNWSAIYSLIFH 165

Query: 83  LSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLA 142
           LS+ADL VTVFC+ GEA WSYTV WL G ++CKL K LQMFSLYLST++LVLIG+DR++A
Sbjct: 166 LSIADLLVTVFCIIGEATWSYTVAWLAGTVACKLVKLLQMFSLYLSTYVLVLIGVDRWVA 225

Query: 143 VRYPMKSISTSSRCCKFVIGAWILSALCSLPQ 174
           V+YPMKS++T+ RC +F++ A+ LS L S+PQ
Sbjct: 226 VKYPMKSLNTARRCHRFLLCAYSLSFLLSIPQ 257

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|38230726|gb|AAR14318.1| corazonin receptor [Manduca sexta]

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 89/152 (58%), Positives = 122/152 (80%)

Query: 23  CLQHAPQLTSSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILH 82
           CL+HAP LT S   RA +L+ +A+LSF GN+ TIISI++ +  RG  + SW  +Y+LI  
Sbjct: 71  CLEHAPILTKSTVIRASVLSAMAILSFFGNLATIISIQRGKRGRGRARPSWTAIYSLIFQ 130

Query: 83  LSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLA 142
           LS+ADL VT+FC+AGEA WS+TV+W  GN++CK+FKFLQMF+LY STFILVLIG+DR+LA
Sbjct: 131 LSIADLLVTIFCIAGEAAWSFTVQWYAGNIACKIFKFLQMFALYQSTFILVLIGVDRWLA 190

Query: 143 VRYPMKSISTSSRCCKFVIGAWILSALCSLPQ 174
           V+YPMKS++T++R  + V+ AW+LS + S+PQ
Sbjct: 191 VKYPMKSMATATRSGRLVVIAWVLSVVLSIPQ 222

Source: Manduca sexta

Species: Manduca sexta

Genus: Manduca

Family: Sphingidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
FB|FBgn0036278	579	GRHRII "GRHRII" [Drosophila me	0.870	0.265	0.474	2.5e-37
FB|FBgn0025595	455	GRHR "Gonadotropin-releasing h	0.661	0.257	0.344	1e-17
UNIPROTKB|Q75W84	420	anr "Annetocin receptor" [Eise	0.683	0.288	0.362	2.8e-17
ZFIN|ZDB-GENE-090128-2	377	gnrhr1 "gonadotropin releasing	0.683	0.320	0.349	5.2e-17
ZFIN|ZDB-GENE-110805-2	388	oxtr "oxytocin receptor" [Dani	0.655	0.298	0.365	2.1e-16
ZFIN|ZDB-GENE-110805-1	382	oxtrl "oxytocin receptor like"	0.655	0.303	0.349	7.2e-16
UNIPROTKB|P49922	328	GNRHR "Gonadotropin-releasing	0.542	0.292	0.367	7.9e-16
UNIPROTKB|P32236	328	GNRHR "Gonadotropin-releasing	0.644	0.347	0.318	1e-15
MGI|MGI:1347010	421	Avpr1b "arginine vasopressin r	0.615	0.258	0.336	2.7e-15
UNIPROTKB|Q5WA50	426	CTR2 "Cephalotocin receptor 2"	0.525	0.218	0.397	2.8e-15

FB|FBgn0036278 GRHRII "GRHRII" [Drosophila melanogaster (taxid:7227)]

 Score = 401 (146.2 bits), Expect = 2.5e-37, P = 2.5e-37
 Identities = 73/154 (47%), Positives = 103/154 (66%)

Query:    21 EPCLQHAPQXXXXXXXXXXXXXXXXXXXFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLI 80
             E  + HAPQ                    +GN+LTI +I K R+ R   +H+W+ +Y+L+
Sbjct:   105 EHVMDHAPQLSRSGLLKVYVLAVMALFSLLGNLLTIWNIYKTRISRRNSRHTWSAIYSLM 164

Query:    81 LHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRF 140
              HLS+AD+ VT FC+ GEA W YTV+WL   ++CKL K  QMFSLYLST++LVLIG+DR+
Sbjct:   165 FHLSIADVLVTWFCIIGEAAWCYTVQWLANELTCKLVKLFQMFSLYLSTYVLVLIGVDRW 224

Query:   141 LAVRYPMKSISTSSRCCKFVIGAWILSALCSLPQ 174
             +AV+YPMKS++ + RC + + G +ILS + SLPQ
Sbjct:   225 IAVKYPMKSLNMAKRCHRLLGGTYILSLVLSLPQ 258

GO:0016500 "protein-hormone receptor activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS;NAS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS;NAS

GO:0004968 "gonadotropin-releasing hormone receptor activity" evidence=ISS

GO:0008188 "neuropeptide receptor activity" evidence=ISS

GO:0004930 "G-protein coupled receptor activity" evidence=ISS;NAS

GO:0097003 "adipokinetic hormone receptor activity" evidence=ISS

GO:0097004 "adipokinetic hormone binding" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0001653 "peptide receptor activity" evidence=IDA

GO:0035237 "corazonin receptor activity" evidence=IDA;NAS

FB|FBgn0025595 GRHR "Gonadotropin-releasing hormone receptor" [Drosophila melanogaster (taxid:7227)]

 Score = 222 (83.2 bits), Expect = 1.0e-17, P = 1.0e-17
 Identities = 43/125 (34%), Positives = 75/125 (60%)

Query:    50 VGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLW 109
             +GN   +  + K R+   LR      +  +++HL++ADL VT+  +  E VW++TV+WL 
Sbjct:    54 IGNSTVLYLLTKRRLRGPLR------IDIMLMHLAIADLMVTLLLMPMEIVWAWTVQWLS 107

Query:   110 GNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFVIGAWILSAL 169
              ++ C+L  F ++F LYLS++++V I +DR+ A+  P+K      R    +  AW+ S +
Sbjct:   108 TDLMCRLMSFFRVFGLYLSSYVMVCISLDRYFAILKPLKRSYNRGRI--MLACAWLGSVV 165

Query:   170 CSLPQ 174
             CS+PQ
Sbjct:   166 CSIPQ 170

GO:0016021 "integral to membrane" evidence=ISS;IDA

GO:0004968 "gonadotropin-releasing hormone receptor activity" evidence=ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS;NAS;IDA

GO:0008188 "neuropeptide receptor activity" evidence=ISS;NAS

GO:0097004 "adipokinetic hormone binding" evidence=IPI

GO:0097003 "adipokinetic hormone receptor activity" evidence=IDA

GO:0004930 "G-protein coupled receptor activity" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0001653 "peptide receptor activity" evidence=IDA

GO:0055088 "lipid homeostasis" evidence=IMP

GO:0016042 "lipid catabolic process" evidence=IMP

GO:0033500 "carbohydrate homeostasis" evidence=IMP

GO:0070328 "triglyceride homeostasis" evidence=IMP

UNIPROTKB|Q75W84 anr "Annetocin receptor" [Eisenia fetida (taxid:6396)]

 Score = 217 (81.4 bits), Expect = 2.8e-17, P = 2.8e-17
 Identities = 46/127 (36%), Positives = 77/127 (60%)

Query:    50 VGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLW 109
             VGN   +  I     H+ L +     +YT+I HLS ADLFV +F L  + +W  T  +  
Sbjct:    63 VGNAAVLAMIVSLSRHKDLGR-----MYTMIGHLSCADLFVAIFNLLPQLLWDVTHRFRG 117

Query:   110 GNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSIS-TSSRCCKFVIGAWILSA 168
             G + CKL K++Q+ ++Y S ++L+   +DR+ A+ +PM+S + TS+     VIGAW+L+ 
Sbjct:   118 GRVLCKLVKYVQVVAMYASAYVLMSTAVDRYTAICHPMRSHTWTSTTAHYLVIGAWVLAL 177

Query:   169 LCSLPQI 175
             + ++PQ+
Sbjct:   178 VFAVPQL 184

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IC

GO:0016021 "integral to membrane" evidence=IC

GO:0016500 "protein-hormone receptor activity" evidence=IDA

GO:0018991 "oviposition" evidence=TAS

ZFIN|ZDB-GENE-090128-2 gnrhr1 "gonadotropin releasing hormone receptor 1" [Danio rerio (taxid:7955)]

 Score = 213 (80.0 bits), Expect = 5.2e-17, P = 5.2e-17
 Identities = 44/126 (34%), Positives = 77/126 (61%)

Query:    50 VGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLW 109
             V N+  +IS+ + R  R L  H    +  LI  L+ ADL +T   +  +A+W+ TV+W  
Sbjct:    54 VSNLSVLISVTRGR-GRHLASH----LRLLIASLASADLVMTFVVMPLDAIWNITVQWYA 108

Query:   110 GNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFVIGAWILSAL 169
             G+  CKL  FL++F+++ + FILV++ +DR  A+ +P++++    R  + ++ AWILS L
Sbjct:   109 GDAMCKLLCFLKLFAMHSAAFILVVVSLDRHHAILHPLEALDAGRRNRRVLLAAWILSVL 168

Query:   170 CSLPQI 175
              + PQ+
Sbjct:   169 LASPQL 174

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0004968 "gonadotropin-releasing hormone receptor activity" evidence=IEA;IDA

GO:0097211 "cellular response to gonadotropin-releasing hormone" evidence=IDA

GO:0007165 "signal transduction" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

ZFIN|ZDB-GENE-110805-2 oxtr "oxytocin receptor" [Danio rerio (taxid:7955)]

 Score = 208 (78.3 bits), Expect = 2.1e-16, P = 2.1e-16
 Identities = 46/126 (36%), Positives = 76/126 (60%)

Query:    51 GNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWG 110
             GN+  +I+I     H    +HS + +Y  + HLS+ADL V VF +  + +W  T  +   
Sbjct:    58 GNLCVLIAI-----HTA--KHSQSRMYYFMKHLSIADLVVAVFQVLPQLIWDITFRFYGP 110

Query:   111 NMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSI-STSSRCCKFVIGAWILSAL 169
             ++ C+L K+LQ   ++ ST++LVL+ IDR +A+  P++S+     RC  +VI +W LS L
Sbjct:   111 DILCRLVKYLQTVGMFASTYMLVLMSIDRCMAICQPLRSLHKRKDRC--YVICSWALSLL 168

Query:   170 CSLPQI 175
              S+PQ+
Sbjct:   169 FSIPQV 174

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004990 "oxytocin receptor activity" evidence=IEA

GO:0005000 "vasopressin receptor activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

ZFIN|ZDB-GENE-110805-1 oxtrl "oxytocin receptor like" [Danio rerio (taxid:7955)]

 Score = 203 (76.5 bits), Expect = 7.2e-16, P = 7.2e-16
 Identities = 44/126 (34%), Positives = 77/126 (61%)

Query:    51 GNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWG 110
             GN+  +++I+ ++       H  + +Y  + HLS+ADL V VF +  + +W  T  +   
Sbjct:    60 GNLCVLVAIQTSK-------HGQSRMYYFMKHLSIADLVVAVFQVLPQLIWDITFRFYGP 112

Query:   111 NMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKF-VIGAWILSAL 169
             +  C+L K+LQ+  ++ ST++LVL+ IDR LA+  P++S+    R  +F V+ +WI+S L
Sbjct:   113 DFLCRLVKYLQVVGMFASTYMLVLMSIDRCLAIWQPLRSLRR--RKDRFYVLASWIISLL 170

Query:   170 CSLPQI 175
              SLPQ+
Sbjct:   171 FSLPQV 176

GO:0004990 "oxytocin receptor activity" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005000 "vasopressin receptor activity" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

UNIPROTKB|P49922 GNRHR "Gonadotropin-releasing hormone receptor" [Sus scrofa (taxid:9823)]

 Score = 200 (75.5 bits), Expect = 7.9e-16, P = 7.9e-16
 Identities = 36/98 (36%), Positives = 68/98 (69%)

Query:    79 LILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGID 138
             L+ HL++A+L  T+  +  + +W+ TV+W  G   CK+  +L++FS+Y   F++V+I +D
Sbjct:    79 LLKHLTLANLLETLIVMPLDGMWNITVQWYAGEFLCKVLSYLKLFSMYAPAFMMVVISLD 138

Query:   139 RFLAVRYPMKSISTSSRCCKFVIG-AWILSALCSLPQI 175
             R LA+  P+ ++ ++SR  +F+IG AW+LS++ + PQ+
Sbjct:   139 RSLAITRPL-AVKSNSRLGRFMIGLAWLLSSIFAGPQL 175

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004968 "gonadotropin-releasing hormone receptor activity" evidence=IEA

UNIPROTKB|P32236 GNRHR "Gonadotropin-releasing hormone receptor" [Bos taurus (taxid:9913)]

 Score = 199 (75.1 bits), Expect = 1.0e-15, P = 1.0e-15
 Identities = 37/116 (31%), Positives = 76/116 (65%)

Query:    61 KNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFL 120
             +N   R  ++   + +  L+ HL++A+L  T+  +  + +W+ TV+W  G + CK+  +L
Sbjct:    61 QNWTQRKEKRKKLSRMKLLLKHLTLANLLETLIVMPLDGMWNITVQWYAGELLCKVLSYL 120

Query:   121 QMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFVIG-AWILSALCSLPQI 175
             ++FS+Y   F++V+I +DR LA+  P+ ++ ++S+  +F+IG AW+LS++ + PQ+
Sbjct:   121 KLFSMYAPAFMMVVISLDRSLAITKPL-AVKSNSKLGQFMIGLAWLLSSIFAGPQL 175

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004968 "gonadotropin-releasing hormone receptor activity" evidence=IEA

MGI|MGI:1347010 Avpr1b "arginine vasopressin receptor 1B" [Mus musculus (taxid:10090)]

 Score = 199 (75.1 bits), Expect = 2.7e-15, P = 2.7e-15
 Identities = 37/110 (33%), Positives = 72/110 (65%)

Query:    67 GLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLY 126
             GL+ H  + ++  +LHL++ DL V +F +  + +W  T  +   ++ C+  K+LQ+ S++
Sbjct:    60 GLQGHKRSRMHLFVLHLALTDLGVALFQVLPQLLWDITYRFQGSDLLCRAVKYLQVLSMF 119

Query:   127 LSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFVIGA-WILSALCSLPQI 175
              ST++L+ + +DR+LAV +P++S+   S+    +I A W+L+A+ SLPQ+
Sbjct:   120 ASTYMLLAMTLDRYLAVCHPLRSLQQPSQSTYPLIAAPWLLAAILSLPQV 169

GO:0001992 "regulation of systemic arterial blood pressure by vasopressin" evidence=IGI

GO:0004871 "signal transducer activity" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0005000 "vasopressin receptor activity" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006950 "response to stress" evidence=ISO

GO:0007165 "signal transduction" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISO

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=ISO

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=ISO

GO:0010460 "positive regulation of heart rate" evidence=ISO

GO:0014049 "positive regulation of glutamate secretion" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISO

GO:0017046 "peptide hormone binding" evidence=ISO

GO:0032849 "positive regulation of cellular pH reduction" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0045777 "positive regulation of blood pressure" evidence=ISO

UNIPROTKB|Q5WA50 CTR2 "Cephalotocin receptor 2" [Octopus vulgaris (taxid:6645)]

 Score = 199 (75.1 bits), Expect = 2.8e-15, P = 2.8e-15
 Identities = 39/98 (39%), Positives = 63/98 (64%)

Query:    80 ILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDR 139
             ILHLS+ADL V  F +  + +W  T  ++ G+  C+  K+ QMFSLYLST+IL++  +DR
Sbjct:    85 ILHLSIADLIVAFFNILPQLIWDITFRFMAGDAMCRFIKYAQMFSLYLSTYILIMTAVDR 144

Query:   140 FLAVRYPMKSISTSSRC---CKFVIGAWILSALCSLPQ 174
             + A+ +P+ +  T + C   CK  I A+ ++ + S+PQ
Sbjct:   145 YRAICHPLSN-QTWTPCMVYCKIFI-AYAIATIFSIPQ 180

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=TAS

GO:0016021 "integral to membrane" evidence=IC

GO:0016500 "protein-hormone receptor activity" evidence=IDA

GO:0046887 "positive regulation of hormone secretion" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	177
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	6e-17
PHA03087	335	PHA03087, PHA03087, G protein-coupled chemokine re	1e-07
PHA02638	417	PHA02638, PHA02638, CC chemokine receptor-like pro	0.003

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score = 75.4 bits (186), Expect = 6e-17
 Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 2/101 (1%)

Query: 77  YTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIG 136
              +L+L+VADL   +        +    +W +G+  CKL  FL + + Y S  +L  I 
Sbjct: 14  NIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVVNGYASILLLTAIS 73

Query: 137 IDRFLAVRYPMKS--ISTSSRCCKFVIGAWILSALCSLPQI 175
           IDR+LA+ +P++   I T  R    ++  W+L+ L SLP +
Sbjct: 74  IDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPL 114

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 32/158 (20%), Positives = 72/158 (45%), Gaps = 14/158 (8%)

Query: 19  SREPCLQHAPQLTSSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYT 78
               C  +    T+S +   ++ + +     VGN++ I  + K ++   +          
Sbjct: 26  DYADCDLNIGYDTNS-TILIVVYSTIFFFGLVGNIIVIYVLTKTKIKTPMD--------I 76

Query: 79  LILHLSVADL-FVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGI 137
            +L+L+V+DL FV       +  +    +W +G  +CK+   L     Y S   + ++ +
Sbjct: 77  YLLNLAVSDLLFVMTLPF--QIYYYILFQWSFGEFACKIVSGLYYIGFYNSMNFITVMSV 134

Query: 138 DRFLAVRYPMKSISTSSRCCKFVIGA--WILSALCSLP 173
           DR++A+ +P+KS   ++    +++    WI+S + + P
Sbjct: 135 DRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTP 172

Length = 335

>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional

 Score = 36.9 bits (85), Expect = 0.003
 Identities = 33/138 (23%), Positives = 66/138 (47%), Gaps = 14/138 (10%)

Query: 39  IILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADL-FVTVFCLAG 97
           I   I+ +L   GN   I+ +   ++       +   +Y  I +L+++DL FV  F    
Sbjct: 103 IFYIIIFILGLFGNAAIIMILFCKKIK------TITDIY--IFNLAISDLIFVIDFPFI- 153

Query: 98  EAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPM--KSISTSSR 155
             +++   +W++G+  CK+         + + F++ L+ IDR+ A+ YP+  +   T + 
Sbjct: 154 --IYNEFDQWIFGDFMCKVISASYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNI 211

Query: 156 CCKFVIGAWILSALCSLP 173
                I +WILS + + P
Sbjct: 212 GIILCIISWILSLIITSP 229

Length = 417

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	177
KOG4219|consensus	423		99.95
PHA03234	338	DNA packaging protein UL33; Provisional	99.93
PHA02834	323	chemokine receptor-like protein; Provisional	99.9
PHA03235	409	DNA packaging protein UL33; Provisional	99.9
PHA03087	335	G protein-coupled chemokine receptor-like protein;	99.89
PHA02638	417	CC chemokine receptor-like protein; Provisional	99.88
KOG4220|consensus	503		99.88
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	99.84
KOG2087|consensus	363		99.58
PF10320	257	7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep	99.45
PF10328	274	7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept	99.27
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	98.83
PF05296	303	TAS2R: Mammalian taste receptor protein (TAS2R); I	98.57
PF11710	201	Git3: G protein-coupled glucose receptor regulatin	98.48
PF10323	283	7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept	98.36
PF05462	303	Dicty_CAR: Slime mold cyclic AMP receptor	98.32
PF10321	313	7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept	98.0
PF10317	292	7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept	97.91
PF10292	324	7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c	97.82
PF03402	265	V1R: Vomeronasal organ pheromone receptor family,	97.67
PF10316	273	7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep	97.37
PF10326	307	7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept	96.72
PF02118	275	Srg: Srg family chemoreceptor; InterPro: IPR000609	96.51
PF00002	242	7tm_2: 7 transmembrane receptor (Secretin family);	96.47
PF02117	328	7TM_GPCR_Sra: Serpentine type 7TM GPCR chemorecept	96.22
PF03383	153	Serpentine_r_xa: Caenorhabditis serpentine recepto	95.47
PF02101	405	Ocular_alb: Ocular albinism type 1 protein; InterP	95.04
PF10327	303	7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept	94.59
PF10318	302	7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept	93.79
PF06681	226	DUF1182: Protein of unknown function (DUF1182); In	93.25
PF10319	310	7TM_GPCR_Srj: Serpentine type 7TM GPCR chemorecept	90.44
PF04789	305	DUF621: Protein of unknown function (DUF621); Inte	89.91
PF02175	236	7TM_GPCR_Srb: Serpentine type 7TM GPCR chemorecept	87.88
KOG4193|consensus	610		87.53

>KOG4219|consensus

Probab=99.95  E-value=1.2e-28  Score=192.47  Aligned_cols=139  Identities=25%  Similarity=0.494  Sum_probs=132.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccccc
Q psy5300          31 TSSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWG  110 (177)
Q Consensus        31 ~~~~~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~  110 (177)
                      ...+....++|.++.+++++||.++++++..+|++|       +.+|+|+.|||+||+..+++..++........+|.+|
T Consensus        32 ~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMR-------tvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G  104 (423)
T KOG4219|consen   32 AWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMR-------TVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFG  104 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehh-------hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccc
Confidence            445677888999999999999999999999999999       9999999999999999999999998888888999999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhHHHHHHHHHHHHHhhcCccC
Q psy5300         111 NMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFVIGAWILSALCSLPQIG  176 (177)
Q Consensus       111 ~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~  176 (177)
                      ..+|++..++......+|+++++++|+|||.||.||++.+.++|....++.++|++|+++++|+.+
T Consensus       105 ~f~C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r~s~r~sk~iIllIW~lA~l~a~P~~l  170 (423)
T KOG4219|consen  105 SFYCRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPRPSRRSSKIIILLIWALALLLALPQLL  170 (423)
T ss_pred             cceeeeccccchhhhhHhHHHHHHHHHHHHHHHhhhcccCCCCcceeehhHHHHHHHHHHhcccee
Confidence            999999999999999999999999999999999999998899999999999999999999999875

>PHA03234 DNA packaging protein UL33; Provisional

Probab=99.93  E-value=1.5e-25  Score=177.55  Aligned_cols=157  Identities=15%  Similarity=0.208  Sum_probs=122.5

Q ss_pred             ccCCcCCCCCCCCcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccccccccccCCchHHHHHHHHHHHH
Q psy5300          10 ANLSLFDNISREPCLQHAPQLTSSASSRAIILAILAVLSFVGNVLTIISIR--KNRVHRGLRQHSWNGVYTLILHLSVAD   87 (177)
Q Consensus        10 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~N~~vi~~i~--~~~~~~~~~~~~~~~~~~~l~~La~sD   87 (177)
                      .|.++.....+.+|... +..+..+.....+|.+++++|++||+++++++.  +++++|       +++|+|+.|||+||
T Consensus         9 ~~~~~~~~~~~~~c~~~-~~~~~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~r-------t~tn~fi~NLAvaD   80 (338)
T PHA03234          9 KILHDEEFKGNASCIST-PTLKKAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKH-------NATSFYLITLFASD   80 (338)
T ss_pred             hhccCCccccCCCCcCc-hHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccc-------cHHHHHHHHHHHHH
Confidence            44455555555555433 222345677888999999999999999999554  555556       99999999999999


Q ss_pred             HHHHHHHhhHHHHHHcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhHHHHHHHHHHH
Q psy5300          88 LFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFVIGAWILS  167 (177)
Q Consensus        88 ll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~~~~t~~~~~~~i~~~W~~s  167 (177)
                      ++.++ ..|+..... .+.|.+|+..|++..++......+|++++++||+|||+||.+|.+...++++....+++.|+.+
T Consensus        81 LL~~l-~lp~~~~~~-~~~w~fG~~lCk~~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~~~~~~~~~i~~~Wi~s  158 (338)
T PHA03234         81 FLHML-CVFFLTLNR-EALFNFNQAFCQCVLFIYHASCSYSICMLAIIATIRYKTLHRRKKNDKKNNHIGRNIGILFLAS  158 (338)
T ss_pred             HHHHH-HHHHHHHHH-hCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHeeeechhhhhhhhhhHHHHHHHHHHHH
Confidence            99976 556555443 3579999999999999999999999999999999999999999974334444455566779999


Q ss_pred             HHhhcCccC
Q psy5300         168 ALCSLPQIG  176 (177)
Q Consensus       168 ~~~~~p~~~  176 (177)
                      ++.++|+++
T Consensus       159 ~l~~~P~l~  167 (338)
T PHA03234        159 AMCAIPAAL  167 (338)
T ss_pred             HHHHhhHhH
Confidence            999999864

>PHA02834 chemokine receptor-like protein; Provisional

Probab=99.90  E-value=6e-23  Score=161.98  Aligned_cols=134  Identities=24%  Similarity=0.432  Sum_probs=113.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccccccc
Q psy5300          33 SASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNM  112 (177)
Q Consensus        33 ~~~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~~  112 (177)
                      .+....+++.+++++|++||+++++++.++++ +       ++.|+|+.|||++|++. ....|+.+.... ++|..|+.
T Consensus        27 ~~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~-~-------~~~n~~i~nLAiaDll~-~~~lP~~i~~~~-~~w~~g~~   96 (323)
T PHA02834         27 VNYFVIVFYILLFIFGLIGNVLVIAVLIVKRF-M-------FVVDVYLFNIAMSDLML-VFSFPFIIHNDL-NEWIFGEF   96 (323)
T ss_pred             hhhhHHHHHHHHHHHHHhhHHHHHHHHHhccc-c-------chhhhhhHHHHHHHHHH-HHHHHHHHHHHc-CCcCCcch
Confidence            44677889999999999999999998877554 3       56799999999999986 557887665544 47999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc-cccccchhHHHHHHHHHHHHHhhcCccC
Q psy5300         113 SCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK-SISTSSRCCKFVIGAWILSALCSLPQIG  176 (177)
Q Consensus       113 ~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~-~~~t~~~~~~~i~~~W~~s~~~~~p~~~  176 (177)
                      .|++..+....+..+|++++++||+|||.+|++|++ +..+.+++..+++++|+.+++.++|+++
T Consensus        97 ~C~~~~~~~~~~~~~Si~tL~~IsidRY~aI~~P~~~~~~~~~~~~~~i~~iWi~s~l~~~P~~~  161 (323)
T PHA02834         97 MCKLVLGVYFVGFFSNMFFVTLISIDRYILVVNATKIKNKSISLSVLLSVAAWVCSVILSMPAMV  161 (323)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHhhheeCchhccCCccchHHHHHHHHHHHHHHHHhhHHH
Confidence            999999999999999999999999999999999997 3445566777788999999999998753

>PHA03235 DNA packaging protein UL33; Provisional

Probab=99.90  E-value=1.2e-22  Score=164.63  Aligned_cols=137  Identities=18%  Similarity=0.206  Sum_probs=110.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHccccccccc
Q psy5300          32 SSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGN  111 (177)
Q Consensus        32 ~~~~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~  111 (177)
                      ..+....+++.+++++|++||+++++++.++++.++     ++..++|+.|||++|++. +...|+.+... ...|..+.
T Consensus        30 ~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~-----~~~~~~~I~NLAvsDLl~-l~~lP~~i~~~-~~~~~~g~  102 (409)
T PHA03235         30 AARTTETFINLLIISVGGPLNLIVLVTQLLANRVHG-----FSTPTLYMTNLYLANLLT-VFVLPFIMLSN-QGLLSGSV  102 (409)
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-----CCccHHHHHHHHHHHHHH-HHHHHHHHHhc-CccccCCC
Confidence            345678888999999999999999987654333320     056678999999999987 56778765432 11233446


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc-cccccchhHHHHHHHHHHHHHhhcCcc
Q psy5300         112 MSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK-SISTSSRCCKFVIGAWILSALCSLPQI  175 (177)
Q Consensus       112 ~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~-~~~t~~~~~~~i~~~W~~s~~~~~p~~  175 (177)
                      ..|++..+....+..+|++++++||+|||.+|++|.+ +..+++++..+++++|+.+++.++|+.
T Consensus       103 ~~Ck~~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~~~~~~~~a~~ii~~iWi~sll~s~P~~  167 (409)
T PHA03235        103 AGCKFASLLYYASCTVGFATVALIAADRYRVIHQRTRARSSAYRSTYKILGLTWFASLICSGPAP  167 (409)
T ss_pred             CeehhHHHHHHHHHHHHHHHHHHHHHHHHHHeechhhccCcccchhhhhHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999987 445688899999999999999999864

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=99.89  E-value=3.5e-22  Score=158.16  Aligned_cols=137  Identities=21%  Similarity=0.439  Sum_probs=120.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccccc
Q psy5300          31 TSSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWG  110 (177)
Q Consensus        31 ~~~~~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~  110 (177)
                      +..+.....++.+++++|++||+++++++.++ ++|       ++.++++.|||++|++.++ ..|..........|..+
T Consensus        37 ~~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~-------~~~~~ll~~laisDll~~~-~~~~~~~~~~~~~~~~~  107 (335)
T PHA03087         37 DTNSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIK-------TPMDIYLLNLAVSDLLFVM-TLPFQIYYYILFQWSFG  107 (335)
T ss_pred             cchhhHHHHHHHHHHHHHHHhhHhEEeeehhc-ccc-------CchHHHHHHHHHHHHHHHH-hHHHHHHHHhCCCCCCC
Confidence            34556778889999999999999999998887 777       9999999999999998766 56666655666788889


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc--cccccchhHHHHHHHHHHHHHhhcCccC
Q psy5300         111 NMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSALCSLPQIG  176 (177)
Q Consensus       111 ~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~--~~~t~~~~~~~i~~~W~~s~~~~~p~~~  176 (177)
                      +..|++..+.......+|+++++++|+|||+++++|++  ...+++++..++.++|+.+++.++|+++
T Consensus       108 ~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~  175 (335)
T PHA03087        108 EFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILF  175 (335)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHHHHHhccHhh
Confidence            99999999999999999999999999999999999997  5578888888999999999999998754

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=99.88  E-value=1e-21  Score=159.69  Aligned_cols=134  Identities=22%  Similarity=0.391  Sum_probs=114.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccccccc
Q psy5300          33 SASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNM  112 (177)
Q Consensus        33 ~~~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~~  112 (177)
                      .......++.+++++|++||.++++++.+ |++|       ++.++++.|||++|++.. ...|+.+... .++|.+|+.
T Consensus        97 ~~~~l~~~y~lvfvlgliGN~LVl~il~~-k~lr-------t~t~i~llnLAisDLl~~-l~lPf~i~~~-~~~W~fg~~  166 (417)
T PHA02638         97 ISEYIKIFYIIIFILGLFGNAAIIMILFC-KKIK-------TITDIYIFNLAISDLIFV-IDFPFIIYNE-FDQWIFGDF  166 (417)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCC-------CHhHHHHHHHHHHHHHHH-HHHHHHHHHH-hcccccccc
Confidence            34567788999999999999999987654 6677       899999999999999874 4778777655 368999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc--cccccchhHHHHHHHHHHHHHhhcCccC
Q psy5300         113 SCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSALCSLPQIG  176 (177)
Q Consensus       113 ~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~--~~~t~~~~~~~i~~~W~~s~~~~~p~~~  176 (177)
                      .|++..++.......+++.++++++|||+||+||.+  +..++++....++++|+++++.++|+++
T Consensus       167 ~Ck~~~~l~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~  232 (417)
T PHA02638        167 MCKVISASYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYF  232 (417)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999997  3445556667788999999999999864

>KOG4220|consensus

Probab=99.88  E-value=5e-24  Score=166.95  Aligned_cols=138  Identities=25%  Similarity=0.419  Sum_probs=130.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccccccc
Q psy5300          33 SASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNM  112 (177)
Q Consensus        33 ~~~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~~  112 (177)
                      +..+++++...++++.++||++|++.+..+|+++       +..|+|+.+||+||++.|.+.+|.......-+.|.+|..
T Consensus        29 q~v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLq-------TVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~  101 (503)
T KOG4220|consen   29 QVVFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQ-------TVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPL  101 (503)
T ss_pred             EEEeeehhhhHHHHHhhhccEEEEEEEEecceee-------eecceeehHHHHhhhhhheeechHHHHHHHHcccccchH
Confidence            3456777788999999999999999999999999       999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc--cccccchhHHHHHHHHHHHHHhhcCccCC
Q psy5300         113 SCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSALCSLPQIGT  177 (177)
Q Consensus       113 ~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~--~~~t~~~~~~~i~~~W~~s~~~~~p~~~~  177 (177)
                      .|++...+-+...-+|++.+..||+|||..|.+|+.  .++|++|+..+|++.|++|+++..|.+++
T Consensus       102 ~CdlWLalDYvaSNASVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~MI~~AW~iSfiLWaPaIl~  168 (503)
T KOG4220|consen  102 VCDLWLALDYVASNASVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPAILF  168 (503)
T ss_pred             HHHHHHHHHHHhhhhhhhhhheeeeecceeecccccccccccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999996  78999999999999999999999987754

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.84  E-value=1.3e-20  Score=141.73  Aligned_cols=119  Identities=38%  Similarity=0.647  Sum_probs=109.1

Q ss_pred             HHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccccccchhhHHHHHHHHHHHHHHH
Q psy5300          51 GNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTF  130 (177)
Q Consensus        51 ~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~  130 (177)
                      ||.++++++.++|++|       ++.++++.|||++|++.++...|........++|..++..|++..++...+...+.+
T Consensus         1 GN~lvi~~~~~~~~~~-------~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~   73 (257)
T PF00001_consen    1 GNILVILVILRSKRLR-------TPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSSIF   73 (257)
T ss_dssp             HHHHHHHHHHHSGGG--------SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhehhhhhhhccCC-------ChhHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence            8999999999999999       999999999999999999988888777777678999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhcCCc--cccccchhHHHHHHHHHHHHHhhcCccC
Q psy5300         131 ILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSALCSLPQIG  176 (177)
Q Consensus       131 ~l~~isidRy~ai~~p~~--~~~t~~~~~~~i~~~W~~s~~~~~p~~~  176 (177)
                      +++++++|||+++++|++  +..+++++...++++|+.+++.++|+.+
T Consensus        74 ~~~~is~dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~  121 (257)
T PF00001_consen   74 SLVAISIDRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLF  121 (257)
T ss_dssp             HHHHHHHHHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999997  5667789999999999999999998743

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>KOG2087|consensus

Probab=99.58  E-value=5.8e-15  Score=114.83  Aligned_cols=134  Identities=27%  Similarity=0.454  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHccc--------c
Q psy5300          35 SSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTV--------E  106 (177)
Q Consensus        35 ~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~--------~  106 (177)
                      .++.+.-.++..++++||.+++......+...       ++..++++|||++|+++++........+....        +
T Consensus        25 ~~lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~-------~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~   97 (363)
T KOG2087|consen   25 WILRISVWVIALLAIVGNLLVLLTRFTSRYEL-------NSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAID   97 (363)
T ss_pred             ceeeehhhhhhhHHhccCeeeeeeeeehhhhc-------cchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHh
Confidence            44566678899999999999998888887776       88899999999999999986665555554322        4


Q ss_pred             cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc-cccccch-hHHHHHHHHHHHHHhhcCccC
Q psy5300         107 WLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK-SISTSSR-CCKFVIGAWILSALCSLPQIG  176 (177)
Q Consensus       107 ~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~-~~~t~~~-~~~~i~~~W~~s~~~~~p~~~  176 (177)
                      |+. ...|++.+++..+....|++.++.+++||+..|.+|+| .+..+.| ...++.+.|+.+.+.++.|.+
T Consensus        98 W~t-g~gC~~aGflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~  168 (363)
T KOG2087|consen   98 WQT-GLGCPVAGFLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLPLF  168 (363)
T ss_pred             hhh-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhcccc
Confidence            544 45999999999999999999999999999999999998 4444444 888899999999999887764

>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.45  E-value=1.4e-13  Score=105.50  Aligned_cols=116  Identities=28%  Similarity=0.368  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccccccchhhHHHHHHHHHH
Q psy5300          46 VLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSL  125 (177)
Q Consensus        46 ~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~  125 (177)
                      ++|++||..++..+.++|++|       ++.+++++.+|++|++.+....|......  ++.+.....|-...+...++.
T Consensus         2 ~ig~~gN~~~i~~~~~~~~Lr-------s~~~~li~~~~~~d~~~~~~~~~~~~~~~--~~~~i~~~~Cf~~~~~~~f~~   72 (257)
T PF10320_consen    2 IIGLFGNLLLIILIFRNKSLR-------SPCYILICILCFADLICLLGTLPFMLFLF--RDHQITRSECFWQIFFYIFFQ   72 (257)
T ss_pred             EEEEEccHHHHHHHHhccccc-------cchHHHHHHHHHHHHHHHhhHHHHHHHHH--hheeccHHHHHHHHHHHHHHH
Confidence            468899999999999999999       99999999999999999887777665433  344567779999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhcCCc--cccccchhHHHHHHHHHHHHHh
Q psy5300         126 YLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSALC  170 (177)
Q Consensus       126 ~~s~~~l~~isidRy~ai~~p~~--~~~t~~~~~~~i~~~W~~s~~~  170 (177)
                      ......+.+|++||++||+.|.+  +..+++..........+++...
T Consensus        73 ~~qs~~~l~i~iDr~iaV~~P~~Y~~~~~~~y~~~~~~~~~~~s~~~  119 (257)
T PF10320_consen   73 CAQSVIMLAIAIDRLIAVCFPLRYRTISTRKYLIILLIFPVIYSIFF  119 (257)
T ss_pred             HHHHHHHHHHHhhheeeEeehhhhhhcccccchhhHhHHHHHHHHHH
Confidence            99999999999999999999997  3445545555445555555543

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.27  E-value=4.6e-11  Score=92.30  Aligned_cols=123  Identities=22%  Similarity=0.334  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccccccc-hhhHHHHHHH
Q psy5300          44 LAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNM-SCKLFKFLQM  122 (177)
Q Consensus        44 ~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~~-~C~~~~~~~~  122 (177)
                      ++++|++.|.++++.+.|.+++|       ++.+++..+.|++|.+.++.......-....+.....+. .-.+.+....
T Consensus         3 ~s~~G~~~N~~v~~~~~~~~~~~-------~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~~~~~~~~~s~~~g~~~~   75 (274)
T PF10328_consen    3 ISIIGIILNWLVFIIIFKLKSLR-------NSFGILCASQAIANIIICLIFLFWVVPMTLLDISFLPSSLNSIIFGFIGM   75 (274)
T ss_pred             eeHHHHHHHHHHHHHHHhccccc-------CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCchHHHHHHHHHHHH
Confidence            56899999999999999999998       999999999999999998866544333333333233333 3445578888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcCCc--cccccchhHHHHHHHHHHHHHhhcC
Q psy5300         123 FSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSALCSLP  173 (177)
Q Consensus       123 ~~~~~s~~~l~~isidRy~ai~~p~~--~~~t~~~~~~~i~~~W~~s~~~~~p  173 (177)
                      .+...+..+-.+||++|+.|+..|.+  +..+.+.+..++++.|++++....+
T Consensus        76 ~~y~~~~~~~~liaiNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~  128 (274)
T PF10328_consen   76 FCYFIGPLSHLLIAINRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTI  128 (274)
T ss_pred             HHHHHHHHHHHHHHHHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHH
Confidence            88899999999999999999999996  6778889999999999999865544

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.83  E-value=3e-08  Score=78.08  Aligned_cols=125  Identities=18%  Similarity=0.306  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHccc--cc---cc----ccchh
Q psy5300          44 LAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTV--EW---LW----GNMSC  114 (177)
Q Consensus        44 ~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~--~~---~~----~~~~C  114 (177)
                      +.++|+++|.+-+.+. .+|.+|.      ++.|.++..+|++|++..+...+.........  +.   ..    .....
T Consensus         6 ~~~~g~~~N~~h~~VL-trk~mR~------~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~   78 (318)
T PF10324_consen    6 LSIFGLFINIFHLIVL-TRKSMRS------SSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFK   78 (318)
T ss_pred             EeHHHHHHHHHHhhhc-CChhhhc------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHH
Confidence            4678999999888766 5556662      68999999999999999887777666444322  11   11    11233


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc----cccccchhHHHHHHHHHHHHHhhcCcc
Q psy5300         115 KLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK----SISTSSRCCKFVIGAWILSALCSLPQI  175 (177)
Q Consensus       115 ~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~----~~~t~~~~~~~i~~~W~~s~~~~~p~~  175 (177)
                      .+.......+.-.|.|..++||+.|++++.+|++    ...+++.+...+.++.+.+.+...+..
T Consensus        79 ~~~~~l~~~~~~~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~  143 (318)
T PF10324_consen   79 LIMESLSDIFRRISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYF  143 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhh
Confidence            4455678888999999999999999999999996    234667777777888888887776654

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs)

Probab=98.57  E-value=3.1e-06  Score=66.51  Aligned_cols=132  Identities=14%  Similarity=0.165  Sum_probs=101.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccccccc
Q psy5300          33 SASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNM  112 (177)
Q Consensus        33 ~~~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~~  112 (177)
                      .+....++..+..++|++||+.+..+..++..++    ++-+|.+..+.+||+++++.............+..+....+.
T Consensus         5 ~~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~----~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~~~   80 (303)
T PF05296_consen    5 LEIIFLIILVVEFIIGILGNGFIVLVNCSDWVKS----RKLSPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFSEN   80 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcC----CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhh
Confidence            3456677888999999999999998887665444    344899999999999999987766655555555555556667


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc------cccccchhHHHHHHHHHHHH
Q psy5300         113 SCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK------SISTSSRCCKFVIGAWILSA  168 (177)
Q Consensus       113 ~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~------~~~t~~~~~~~i~~~W~~s~  168 (177)
                      .++...+...+....|.|..+++++--++.|.+.-+      +.+-++....++.+.++.++
T Consensus        81 ~~~~~~~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~  142 (303)
T PF05296_consen   81 VYKIIDFLWMFSNSSSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISF  142 (303)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999988866553      23333344456677777777

TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane

>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=98.48  E-value=8.9e-06  Score=60.16  Aligned_cols=73  Identities=23%  Similarity=0.237  Sum_probs=63.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy5300          74 NGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYP  146 (177)
Q Consensus        74 ~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p  146 (177)
                      .-++-++.||.++|++.++............+....++..|..++++.......+-+...+|+++-|+.+.+|
T Consensus        34 ~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~  106 (201)
T PF11710_consen   34 SFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRP  106 (201)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4555699999999999999877656666665556667789999999999999999999999999999999999

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.

>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.36  E-value=1e-06  Score=68.60  Aligned_cols=128  Identities=18%  Similarity=0.397  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcc--cc--cccccchhhHHHHH
Q psy5300          45 AVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYT--VE--WLWGNMSCKLFKFL  120 (177)
Q Consensus        45 ~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~--~~--~~~~~~~C~~~~~~  120 (177)
                      +++.++-...+++.+.+.|+.++   .-+++.+-++.+.+++|++..+............  ++  ...++..-+.....
T Consensus         5 ~~~tlply~~il~~l~~~r~~~~---~~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~   81 (283)
T PF10323_consen    5 SIVTLPLYIFILYCLLKLRKRSK---TFKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNI   81 (283)
T ss_pred             EeehHHHHHHHHHHHHHcccCcc---ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH
Confidence            34556666677777766665431   0118999999999999999876554433332221  11  12233345677777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcCC-c--cccccchhHHHHHHHHHHHHHhhcCcc
Q psy5300         121 QMFSLYLSTFILVLIGIDRFLAVRYPM-K--SISTSSRCCKFVIGAWILSALCSLPQI  175 (177)
Q Consensus       121 ~~~~~~~s~~~l~~isidRy~ai~~p~-~--~~~t~~~~~~~i~~~W~~s~~~~~p~~  175 (177)
                      .+..........+.+|++||.|+++|. +  +..++.+...+..+-|+.+++.++|.+
T Consensus        82 ~y~~~~~~~~gi~lls~nR~~ai~~P~~~~~~~~~~~~~~~i~~i~wi~p~li~~~~~  139 (283)
T PF10323_consen   82 AYYFLYIQCIGIVLLSLNRYLAICFPTSRHTKFWQPAKIWIIILIQWIPPLLISLPFF  139 (283)
T ss_pred             HHHHHHHHHHhHHHHHHhhhheEEeecHHHhhhccccchhheeeeeehhhhhheeeee
Confidence            888888999999999999999999999 4  677888888899999999999998854

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor

Probab=98.32  E-value=2e-05  Score=61.78  Aligned_cols=127  Identities=18%  Similarity=0.233  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccccccchhh
Q psy5300          36 SRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCK  115 (177)
Q Consensus        36 ~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~~~C~  115 (177)
                      ....+..+..+++++|-++++....+.|++|       ++.+-++.-++++|++..+.....    ...++...++..|.
T Consensus         8 ~~~~i~~~~s~lSllGclfiI~tf~~~k~~r-------~~~~rli~yl~~~~ll~~v~~~~~----~~~~~~~~~s~lC~   76 (303)
T PF05462_consen    8 TLYAIELVASVLSLLGCLFIIITFCLFKRLR-------KPINRLIFYLSIANLLTNVASMIM----TLSPSAGENSFLCQ   76 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------ccHHHHHHHHHHHHHHHHHHHHHH----HhcccCCCCCcchh
Confidence            4555667789999999999999999999999       888889999999999987644321    12233344577999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhHHHHHHHHHHHHHhhcCcc
Q psy5300         116 LFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFVIGAWILSALCSLPQI  175 (177)
Q Consensus       116 ~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~~~~t~~~~~~~i~~~W~~s~~~~~p~~  175 (177)
                      .++++...+..++.+=.++||++=|..+.++..  ..+|.-..-..+.|...++.++.++
T Consensus        77 ~Qafliq~f~~as~lWt~~iA~nly~~~~~~~~--~~~k~e~~Y~l~~wGiPli~a~i~l  134 (303)
T PF05462_consen   77 FQAFLIQFFMLASFLWTLCIAFNLYLTFVKRYD--ELEKLEKYYHLVCWGIPLIPAVIPL  134 (303)
T ss_pred             hHhHHHHHhhHHHHHHHHHHHHHhhheeEEcCc--cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999887543  2344445556788998888765543

>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []

Probab=98.00  E-value=0.00025  Score=55.95  Aligned_cols=121  Identities=14%  Similarity=0.194  Sum_probs=84.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHccc-ccccc
Q psy5300          32 SSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTV-EWLWG  110 (177)
Q Consensus        32 ~~~~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~-~~~~~  110 (177)
                      ..+......+.+.+++-.+.....++++.++++.|       .+.|=.+.-|++.|++...............+ .+-.-
T Consensus        30 ~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k-------~~~ykiM~~L~i~Di~~l~~~si~tG~l~i~G~vfC~~  102 (313)
T PF10321_consen   30 VKRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFK-------MSCYKIMFFLAIFDIIQLFINSIITGILAIFGAVFCSY  102 (313)
T ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHHHHHhcccc-------CcHHHHHHHHHHHHHHHHHhhhhhhhHHHhcCccccCC
Confidence            44567788889999999999999999998877776       89999999999999998654322222222222 11111


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc--cccccchhHHH
Q psy5300         111 NMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKF  159 (177)
Q Consensus       111 ~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~--~~~t~~~~~~~  159 (177)
                      +..=.+.+.....+...+...-..+++||..-+..|.+  .....++....
T Consensus       103 P~~~~i~G~~~~~~W~~~c~~~i~LainR~~~l~~~~~~~~~F~g~~~~~~  153 (313)
T PF10321_consen  103 PRFIYIMGCIALGSWCGSCIICILLAINRCCELNFPFKLKFLFEGKRTYIV  153 (313)
T ss_pred             chHhhhhhccchhhHHHHHHHHHHHHHHHHHHHhcchhhHHhhcCceEEee
Confidence            11234455666777888899999999999999998875  34444554443

Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.91  E-value=0.00041  Score=54.18  Aligned_cols=124  Identities=17%  Similarity=0.149  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccc-----------c
Q psy5300          39 IILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVE-----------W  107 (177)
Q Consensus        39 ~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~-----------~  107 (177)
                      +++.+.+.+|++.|.+.++.+.++.-..=      ++-.+++.|-|+.|++.+.... ........++           .
T Consensus         3 i~~~~~~~~~~~~n~~Ll~~i~~~tp~~l------~~~~~~l~~~~~~~~~~~~~~~-~~q~R~i~~~~~~~~~~~GpC~   75 (292)
T PF10317_consen    3 IYHPIFFILGIILNILLLYLIIFKTPKSL------RTYSILLLNTAIFDLISIISAF-LTQPRIIPNGTSIAVISYGPCR   75 (292)
T ss_pred             EeHHHHHHHHHHHHHHHHHHHHHhChHHH------HHHHHHHHHHHHHHHHHHHHHH-HhhhhccCCCCcEEEEeeecce
Confidence            35678899999999999988877753321      6777899999999999876433 2222222221           1


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhHHHHHHHHHHHHHhhc
Q psy5300         108 LWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFVIGAWILSALCSL  172 (177)
Q Consensus       108 ~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~~~~t~~~~~~~i~~~W~~s~~~~~  172 (177)
                      ..|+..|.........+...+.+++..--.-||.++.++..   ++++....+...+..++...+
T Consensus        76 ~~~~~~C~~~y~~~~~~~~~s~~~i~~sf~yRy~iL~~~~~---~~~~~i~~~~l~~~p~~~~~i  137 (292)
T PF10317_consen   76 YFGPWFCFFCYHIMLHFSIHSGWSIILSFYYRYYILRNPSP---SRKRIIFICILIYIPSFSMLI  137 (292)
T ss_pred             ecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHHHHHHHHH
Confidence            24567787777788888888888888888999999998654   556666666666666555433

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].

>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.82  E-value=0.0014  Score=51.93  Aligned_cols=127  Identities=14%  Similarity=0.165  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHH---Hcc--c--ccc
Q psy5300          36 SRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVW---SYT--V--EWL  108 (177)
Q Consensus        36 ~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~---~~~--~--~~~  108 (177)
                      ....+..+++++|++.++..++...+++..|       ....+++...+++.++.++........+   ...  +  +..
T Consensus        18 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~H-------~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~   90 (324)
T PF10292_consen   18 LSLIFNLLLSIIAFPVIIYALWKIRNSKLFH-------FNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMI   90 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchhc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccc
Confidence            3445677888999999999999998888888       7888999999999998876443332222   222  1  233


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhHHH-HHHHHHHHHH
Q psy5300         109 WGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKF-VIGAWILSAL  169 (177)
Q Consensus       109 ~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~~~~t~~~~~~~-i~~~W~~s~~  169 (177)
                      .+..-|-.......++...+..+..++.+||++|..+.-++-..++..+.. ..+.|++++.
T Consensus        91 ~~~~~C~~lR~~~~~~~~~~~~t~v~l~IER~iAT~~~~~YE~~~~~~Gi~l~~~qi~is~~  152 (324)
T PF10292_consen   91 PSTYRCFILRIPYNFGLFLVSFTTVSLVIERTIATFFSKSYEKSGKWLGILLAFFQILISLL  152 (324)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCccHHHHHHHHHHHHHHH
Confidence            456688888888999999999999999999999999987633333344333 3444555544

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].

>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.67  E-value=0.00016  Score=55.62  Aligned_cols=101  Identities=14%  Similarity=0.263  Sum_probs=76.0

Q ss_pred             cCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC--c
Q psy5300          71 HSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPM--K  148 (177)
Q Consensus        71 ~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~--~  148 (177)
                      ++.+|.+..+.+||++|.+..+.-..+........+ .+++..||+..++.-...+.|+.+.+.+|+-+-+.|.-.-  +
T Consensus         6 ~r~kp~dlIl~hLa~aN~lvLl~rGip~~~~~~~~~-~~~d~gCK~v~Y~~RV~RglSictTCLLSvfQAItISP~~s~w   84 (265)
T PF03402_consen    6 HRLKPIDLILIHLALANILVLLSRGIPQTMAFFGWK-FFDDIGCKIVFYIYRVARGLSICTTCLLSVFQAITISPSNSRW   84 (265)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcc-cCCCceeeeeeeehHHhchhhHHhhhHHHHHhhEEEecCCchh
Confidence            455899999999999999987654444444433323 4588999999999999999999999999997776664332  2


Q ss_pred             ---cccccchhHHHHHHHHHHHHHhhc
Q psy5300         149 ---SISTSSRCCKFVIGAWILSALCSL  172 (177)
Q Consensus       149 ---~~~t~~~~~~~i~~~W~~s~~~~~  172 (177)
                         +...++.....+...|++.++...
T Consensus        85 ~~lK~k~pk~i~~~~~~~Wilnlli~~  111 (265)
T PF03402_consen   85 AELKVKAPKYIGPSCLFCWILNLLINI  111 (265)
T ss_pred             hhhhhhcCCccccHHHHHHHHHHhhhc
Confidence               345566677778889998887653

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane

>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.37  E-value=0.0043  Score=48.04  Aligned_cols=106  Identities=16%  Similarity=0.144  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcc---cccccccc
Q psy5300          36 SRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYT---VEWLWGNM  112 (177)
Q Consensus        36 ~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~---~~~~~~~~  112 (177)
                      ....+-.+.+.+....|...++.+..+|+ ++      ++...++---...|.+.+....+........   ++....+.
T Consensus         7 iv~~i~i~~s~~~~~iN~~lL~~if~~Kk-~k------k~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (273)
T PF10316_consen    7 IVSIIGIIFSIITCLINFYLLYSIFYSKK-KK------KPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSLFPEFLDYKN   79 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccc-cC------CCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhcccc
Confidence            34455667888999999999999997777 52      5555566667899999988766554444332   11111122


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc
Q psy5300         113 SCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK  148 (177)
Q Consensus       113 ~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~  148 (177)
                      .=-+.+.-..............||+||..|+..|..
T Consensus        80 ~if~~~~p~~~~~~iR~~l~~~Ia~dR~~A~~fPI~  115 (273)
T PF10316_consen   80 LIFYIGWPSSNLGSIRSILALIIALDRVFAVYFPIF  115 (273)
T ss_pred             EEeehhhhHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence            223334445555677788889999999999999985

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.

>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.72  E-value=0.002  Score=50.57  Aligned_cols=109  Identities=17%  Similarity=0.107  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcc----------cccccc
Q psy5300          41 LAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYT----------VEWLWG  110 (177)
Q Consensus        41 ~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~----------~~~~~~  110 (177)
                      .-+.++++++.|.+.++.+.++.+++-      ..=.+++...|+.|+..++.-..........          +++..+
T Consensus         5 ~~~~~~~s~~~N~~Li~Li~~~s~k~~------G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~   78 (307)
T PF10326_consen    5 QYIGFVLSLFLNSLLIYLILTKSPKSL------GSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLS   78 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCC------CCEEEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeeccccccc
Confidence            346778999999999999876654431      2222567778999999887655443333211          122334


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc-cccccch
Q psy5300         111 NMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK-SISTSSR  155 (177)
Q Consensus       111 ~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~-~~~t~~~  155 (177)
                      +...+........+.+.+...++.--+.||.++++|.+ +....++
T Consensus        79 ~~~~~~l~~~y~~~f~~~~~llaihFiYRY~av~~~~~l~~f~~~~  124 (307)
T PF10326_consen   79 KSIGQILLAIYCGCFGMSFSLLAIHFIYRYWAVCRPKKLRYFSGWR  124 (307)
T ss_pred             chheeehhhhhhhhHHHHHHHHHhHhhhheeeeccchhhccccccc
Confidence            45566666777777778888888888999999999997 4444333

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].

>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.51  E-value=0.014  Score=44.87  Aligned_cols=102  Identities=17%  Similarity=0.258  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccc--cccccccCCchHHHHHHHHHHHHHHHHHHHhhH-HHHHHccc------c-cccc
Q psy5300          41 LAILAVLSFVGNVLTIISIRKNRV--HRGLRQHSWNGVYTLILHLSVADLFVTVFCLAG-EAVWSYTV------E-WLWG  110 (177)
Q Consensus        41 ~~~~~~~gi~~N~~vi~~i~~~~~--~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~-~~~~~~~~------~-~~~~  110 (177)
                      ..+-++.+++.+..+++.+.++++  ..+      ++.+-+...-++.|++.-+...+. .......+      . .+..
T Consensus         4 ~~~Ygi~s~~l~~~~~~~i~~~~~~~~~~------~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~~~~~~~~   77 (275)
T PF02118_consen    4 QLIYGIPSLILYIFILYVIWKSKKKSYFK------SSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFFLPFFENP   77 (275)
T ss_pred             ehhHHHHHHHHHHHHHHHHHHhccccccC------CccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhHHHHHcCC
Confidence            356678888999999999988888  311      777777777777777664432221 11111000      0 1223


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc
Q psy5300         111 NMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK  148 (177)
Q Consensus       111 ~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~  148 (177)
                      +...++..++.+.+..+...+...+++||+-++..|.+
T Consensus        78 ~~~l~~~~~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~  115 (275)
T PF02118_consen   78 PFFLNIFYFLQYYFAYVQYLSTILISLNRFTSVLFPIR  115 (275)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            44667777888889999999999999999999999986

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane

>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.47  E-value=0.0015  Score=49.41  Aligned_cols=124  Identities=19%  Similarity=0.182  Sum_probs=3.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccccccchhhHHHH
Q psy5300          40 ILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKF  119 (177)
Q Consensus        40 ~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~  119 (177)
                      +..+-+.+++++-.+.+......|++|       +.++....||++++++..+..+.. ......+..+..+..|+..+.
T Consensus         6 i~~vg~~~Si~~ll~~i~~~~~~r~lr-------~~~~~i~~~l~~sll~~~~~~l~~-~~~~~~~~~~~~~~~C~~~a~   77 (242)
T PF00002_consen    6 ISYVGCSLSIICLLLTIITYLLFRKLR-------SFRNKIHLNLCLSLLLANLSFLIG-ISQTFSPISTTNHCLCRAIAI   77 (242)
T ss_dssp             HHHHHHH-------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhc-------ccchhhhhhhHHHHHHHHHHHhee-hhhccccccccccccchhhhh
Confidence            344455555666555565555557776       556778899999999887654432 111111111112235999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhHHHHHHHHHHHHHhhcC
Q psy5300         120 LQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFVIGAWILSALCSLP  173 (177)
Q Consensus       120 ~~~~~~~~s~~~l~~isidRy~ai~~p~~~~~t~~~~~~~i~~~W~~s~~~~~p  173 (177)
                      +.+.+..++..=+.+.++|-|..+.++..+.  +++........|...++....
T Consensus        78 ~~hy~~la~f~Wm~~~~~~l~~~~~~~~~~~--~~~~~~~~~~gwg~P~~iv~i  129 (242)
T PF00002_consen   78 LLHYFFLASFFWMLVEAFYLYRLLVKVFNSS--RRRFWWYYLIGWGIPALIVVI  129 (242)
T ss_dssp             ------------------------------------------------------
T ss_pred             HhHHHHHHHHHHHHHHHHHhheeEEEeeccc--chhhheeeeeeecCcceeeee
Confidence            9999998888889999999999998874322  344445556667766655443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.

>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.22  E-value=0.15  Score=40.67  Aligned_cols=108  Identities=19%  Similarity=0.294  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHH----ccc----c
Q psy5300          35 SSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWS----YTV----E  106 (177)
Q Consensus        35 ~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~----~~~----~  106 (177)
                      .....+..++.+++.++...++-.+.++.-.+.      +...+++.+|..+++=.... ........    +..    +
T Consensus        21 ~~~~~~~~~~~~~t~~~s~~Ai~~l~~ksif~~------sTr~LL~~~l~~a~~Hq~~y-~~~~~~~lyrsf~~~~dpC~   93 (328)
T PF02117_consen   21 RINQIFILIIIIITFIFSVFAIKKLWKKSIFSN------STRILLISNLLFANIHQISY-AIIQIWSLYRSFFYSDDPCS   93 (328)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc------cHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCee
Confidence            445556777888888999888888888777764      77777888888777654332 11111111    111    3


Q ss_pred             cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcc
Q psy5300         107 WLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKS  149 (177)
Q Consensus       107 ~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~~  149 (177)
                      ....+..|........++.....+.-.++.+||.+|...|-..
T Consensus        94 i~f~~~eC~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~~~~  136 (328)
T PF02117_consen   94 ILFTSSECFPYYYFYYFTNSGMIFIQFALTIDRLLATFFPKYY  136 (328)
T ss_pred             eEeecCceeeeehHHHHHHHHHHHHHHHHHHHHHHHHhchhhh
Confidence            4456778999999999999999999999999999999888643

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane

>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.47  E-value=0.014  Score=41.05  Aligned_cols=57  Identities=25%  Similarity=0.300  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcc--ccccchhHHHHHHHHHHHHHhhcCc
Q psy5300         118 KFLQMFSLYLSTFILVLIGIDRFLAVRYPMKS--ISTSSRCCKFVIGAWILSALCSLPQ  174 (177)
Q Consensus       118 ~~~~~~~~~~s~~~l~~isidRy~ai~~p~~~--~~t~~~~~~~i~~~W~~s~~~~~p~  174 (177)
                      ..+.+++.....+...+|+++|-.++.+|+++  ..|.+|.+.-+.++.++.+..-+.|
T Consensus        48 TL~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~LlIP  106 (153)
T PF03383_consen   48 TLFGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFISLLIP  106 (153)
T ss_pred             eeeehHHHHHHHHHHHHHHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHHHHhh
Confidence            34566777778888899999999999999986  6898888887776666666554444

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].

>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes

Probab=95.04  E-value=1.4  Score=35.75  Aligned_cols=105  Identities=18%  Similarity=0.280  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccc-----------
Q psy5300          40 ILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWL-----------  108 (177)
Q Consensus        40 ~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~-----------  108 (177)
                      +.+..+.+|+.|-++-++--+|... ++.+..+.....-.+..++++|++.++-.+.-...+...++..           
T Consensus        32 vCLgSs~l~l~gallQLlp~rr~~~-~~~~~~sp~~~~rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s~~~~~d~  110 (405)
T PF02101_consen   32 VCLGSSVLSLLGALLQLLPRRRSAG-PRAPARSPSSSRRILFWLAVADLLACLGVIVRSSVWLGFPNFIDSISDVNGTDI  110 (405)
T ss_pred             hHHHHHHHHHHHHHHhhcccccccc-ccccccCCcCCchhHHHHHHHHHHhhhhHHHHhhhhhcCCcccccccCCCCCcc
Confidence            3444555555555554443222221 1112222122334788999999999886665555554333221           


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy5300         109 WGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRY  145 (177)
Q Consensus       109 ~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~  145 (177)
                      .+...|.....-..++..++.+=..+-++|-|+.+.+
T Consensus       111 wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~  147 (405)
T PF02101_consen  111 WPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRR  147 (405)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeec
Confidence            2346888877777778888888889999999998755

A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane

>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=94.59  E-value=0.87  Score=35.86  Aligned_cols=115  Identities=16%  Similarity=0.110  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHH---HHHHHHHHHHHHHHhhHHHHHHccccccccc
Q psy5300          35 SSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLI---LHLSVADLFVTVFCLAGEAVWSYTVEWLWGN  111 (177)
Q Consensus        35 ~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l---~~La~sDll~~l~~~~~~~~~~~~~~~~~~~  111 (177)
                      .+....+=++|.++++.|.+.++.+..+.++-+      +-+++++   ....++|+-.+.+..|.-.....++ +..| 
T Consensus         9 ~~li~~~~~ig~iS~~~n~~~iyLi~fks~k~~------~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~ag-y~~G-   80 (303)
T PF10327_consen    9 QWLINYYHIIGVISFILNSLGIYLIIFKSPKLD------NFRYYLLYFQISCTLTDIHLTFLMQPIPLFPIPAG-YCVG-   80 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHheeEEEecCCcc------chhhHHHHHHHHHHHhhhhhhhhccchhhcceeEE-EEEe-
Confidence            577788889999999999999988876654431      4444433   3456789988887777655554432 2222 


Q ss_pred             chhh-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhH
Q psy5300         112 MSCK-------LFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCC  157 (177)
Q Consensus       112 ~~C~-------~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~~~~t~~~~~  157 (177)
                      .+|+       ..............-.+..--+-|+.++.+..++..-++...
T Consensus        81 ~l~~~f~i~~h~~~~i~~~l~~~q~~~L~~CF~~KHQaIa~i~~~~~l~~~~~  133 (303)
T PF10327_consen   81 FLARYFGISSHYLMTIWIFLFIFQIESLVICFLRKHQAIARILSKHVLPKWFY  133 (303)
T ss_pred             ehhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCcHHHH
Confidence            2333       233344444555555555556889999999887433334433

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.

>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=93.79  E-value=1.7  Score=33.92  Aligned_cols=133  Identities=13%  Similarity=0.086  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHH----HHHHHHHHHHhhHHHHHHcc----ccc
Q psy5300          36 SRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLS----VADLFVTVFCLAGEAVWSYT----VEW  107 (177)
Q Consensus        36 ~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La----~sDll~~l~~~~~~~~~~~~----~~~  107 (177)
                      ......=++..++++-|.+..+.+.++...+-      +.....+.++.    +.|+..+.+..|........    +-.
T Consensus         5 ~~~~~~h~~~~i~~Pi~~~~~y~Il~ktp~~m------~~~k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~~~~~G~l   78 (302)
T PF10318_consen    5 FYSIVLHIITIISIPIYIFGFYCILFKTPKSM------KSVKWYLLNHHFWNFLLDLYLSFLIIPYFFFPSPAGYPLGIL   78 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHheeEeChhhh------HHHHHHHHHHHHHHHHHHHHhhhEEeeeeccchHHhhCCcch
Confidence            34455567888999999999998877754431      34444455544    56777776666543322211    111


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhHHHHHHHHHHHHHhhcCc
Q psy5300         108 LWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFVIGAWILSALCSLPQ  174 (177)
Q Consensus       108 ~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~~~~t~~~~~~~i~~~W~~s~~~~~p~  174 (177)
                      ..-+.-..++.+...........+...+--+||.++..+-++...++.........++.+....+|.
T Consensus        79 ~~~gv~~~~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~~~~~~~~r~~~~~~~y~~~~~~~~~~  145 (302)
T PF10318_consen   79 SYFGVPTPIQFYIGVTLLAFVGVSILSLFENRYQIIIRNRSRSLWKKIRIIFIIFNYIIAFLFFIPI  145 (302)
T ss_pred             hhcccChHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence            1112345666666777777777788888899999998764422222222222344455555554443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].

>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans

Probab=93.25  E-value=1.8  Score=32.19  Aligned_cols=99  Identities=16%  Similarity=0.117  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccc-cccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHH-----cc--cccccc
Q psy5300          39 IILAILAVLSFVGNVLTIISIRKNRVHR-GLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWS-----YT--VEWLWG  110 (177)
Q Consensus        39 ~~~~~~~~~gi~~N~~vi~~i~~~~~~~-~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~-----~~--~~~~~~  110 (177)
                      ..=.++...+.+.+.+...-++++|++. ++|     ++=      .++-+..-++..|......     ..  .+-+.+
T Consensus        45 ~~e~~v~~~s~~~s~~L~ifi~~rk~l~~~~k-----sTI------vFaT~g~fvLtlP~~lf~~wl~~~l~~~~ep~yt  113 (226)
T PF06681_consen   45 TVEFIVNTVSWLFSYFLCIFIWRRKNLIRSYK-----STI------VFATFGQFVLTLPLYLFQTWLVFFLWFGHEPQYT  113 (226)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhhhHHHHHhhc-----CeE------EEeeHHHHHHHHHHHHHHHHHHHHHhcCCCceEE
Confidence            3345566677777777666676666653 222     111      1122222233344333222     21  233446


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc
Q psy5300         111 NMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK  148 (177)
Q Consensus       111 ~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~  148 (177)
                      -..|.+...+...........-+++|++||+.|....|
T Consensus       114 I~vCSflk~f~S~t~s~~~vip~aVAIyRy~~VV~k~r  151 (226)
T PF06681_consen  114 IFVCSFLKNFTSSTTSCAQVIPVAVAIYRYLIVVLKKR  151 (226)
T ss_pred             EEeehHHHhHHHHHhhhhccchhhhhhhhhheeeeccc
Confidence            67999988777777777777777899999999988665

The function of this family is unknown.

>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=90.44  E-value=5.2  Score=31.67  Aligned_cols=101  Identities=16%  Similarity=0.039  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHH--hhHHHHHH-------ccccc-cccc
Q psy5300          42 AILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFC--LAGEAVWS-------YTVEW-LWGN  111 (177)
Q Consensus        42 ~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~--~~~~~~~~-------~~~~~-~~~~  111 (177)
                      -+.++++.+.|-+.++.+..+|+.+=      ..=.+++..-|+-|++.++.-  +|..+...       ..+++ ....
T Consensus        12 k~~~~lsf~~Np~fiyli~~~~~~~~------G~Yr~LL~~Fa~fn~~~S~~~~~vp~~vh~yry~F~~fi~dG~F~~~s   85 (310)
T PF10319_consen   12 KIFGILSFIVNPIFIYLIFTEKKSQF------GNYRYLLLFFAIFNLIYSVVDLLVPICVHGYRYAFVVFISDGPFFEKS   85 (310)
T ss_pred             HHHHHHHHHHhhhhheeEEccccccc------ccHHHHHHHHHHHHHHHHHHHHHhhheeeccceEEEEEEcCCcCcCcc
Confidence            45788899999999999998887762      233368888999999998743  33222221       11111 1112


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc
Q psy5300         112 MSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK  148 (177)
Q Consensus       112 ~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~  148 (177)
                      ..-.........+...|-..+..==+.||+++++|..
T Consensus        86 ~l~~~~ls~RCsfIs~sYaIL~~HFvYRYl~l~~~~~  122 (310)
T PF10319_consen   86 ELGQHLLSIRCSFISGSYAILHIHFVYRYLVLFNSKF  122 (310)
T ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCcHH
Confidence            2333444455555556666666667999999999864

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].

>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity

Probab=89.91  E-value=7.9  Score=30.19  Aligned_cols=96  Identities=17%  Similarity=0.261  Sum_probs=61.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHH----hhHHHHHHcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc-
Q psy5300          74 NGVYTLILHLSVADLFVTVFC----LAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK-  148 (177)
Q Consensus        74 ~~~~~~l~~La~sDll~~l~~----~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~-  148 (177)
                      -....|+..|.++-.+.+..-    +|-........+... +..-.+..+...++-..-.++...+|++|......-.+ 
T Consensus        47 m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~~~~~-s~~f~~~Sy~idf~h~siLfsNlviaIqR~fVFFfr~~t  125 (305)
T PF04789_consen   47 MKFFWFLTQLTISVFIISSLNLLINVPATLFSLITKEFVQ-SELFIFMSYLIDFCHYSILFSNLVIAIQRFFVFFFRNLT  125 (305)
T ss_pred             chHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhHHHhc-cchhhHHHHHHHHHHHHHHHHHHHHHHhhheeeeehhhh
Confidence            567789999999888776432    232222222222222 23446667777888888999999999999887764222 


Q ss_pred             -cccccchhHHHHHHHHHHHHHh
Q psy5300         149 -SISTSSRCCKFVIGAWILSALC  170 (177)
Q Consensus       149 -~~~t~~~~~~~i~~~W~~s~~~  170 (177)
                       +...+.....=+..+|+++...
T Consensus       126 ~~~F~s~~iyiWL~~vWils~~v  148 (305)
T PF04789_consen  126 DKVFESPVIYIWLLLVWILSIGV  148 (305)
T ss_pred             hhhccchHHHHHHHHHHHHHHHH
Confidence             3334445555578889888764

>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=87.88  E-value=10  Score=28.81  Aligned_cols=54  Identities=15%  Similarity=0.192  Sum_probs=41.1

Q ss_pred             cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhHHHH
Q psy5300         107 WLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFV  160 (177)
Q Consensus       107 ~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~~~~t~~~~~~~i  160 (177)
                      ...++..+|.......+....+.+.-..+++||++|..+..++-.++...+-++
T Consensus        78 LiI~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~~r~~LGPiL  131 (236)
T PF02175_consen   78 LIIDPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYENTRTLLGPIL  131 (236)
T ss_pred             EEEchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccCceeehhHH
Confidence            345567888888899999999999999999999999988665444444444433

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane

>KOG4193|consensus

Probab=87.53  E-value=18  Score=31.57  Aligned_cols=115  Identities=16%  Similarity=0.212  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccccccc-hhhHHHHHH
Q psy5300          43 ILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNM-SCKLFKFLQ  121 (177)
Q Consensus        43 ~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~~-~C~~~~~~~  121 (177)
                      +-+.+.+++=.+.+.+..--|+++       +..+....||+++=++.-++       ..........+. .|+...++.
T Consensus       328 VG~~iSlvcL~lti~ty~~~~~l~-------~~~~~i~~~l~~~L~l~~l~-------fL~~~~~~~~~~~~C~~~a~ll  393 (610)
T KOG4193|consen  328 VGCIISLVCLLLTIATYLLFRKLQ-------NDRTKIHINLCLCLFLAELL-------FLLGIDRTSTSVVLCIAAAILL  393 (610)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHH-------hhcchhHHHHHHHHHHHHHH-------HhcccccccCcccccHHHHHHH
Confidence            344444444445555555555555       33356677777773333221       112111222233 799999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhHHHHHHHHHHHHHhhc
Q psy5300         122 MFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFVIGAWILSALCSL  172 (177)
Q Consensus       122 ~~~~~~s~~~l~~isidRy~ai~~p~~~~~t~~~~~~~i~~~W~~s~~~~~  172 (177)
                      +++..+..+=+..++++-|..++.-+ ....+++........|...++...
T Consensus       394 hff~LaaF~Wm~leg~hl~~~~v~vf-~~~~~~~~l~~~~~gwg~Pavvv~  443 (610)
T KOG4193|consen  394 HFFFLAAFFWMLLEGFHLYLLLVEVF-RSRPRRRKLLYSLYGWGVPAVVVG  443 (610)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchHHHHHHHHHhhhhHHHHh
Confidence            99999999999999999998555443 233344444443577877766543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	177
2y00_B	315	Turkey Beta1 Adrenergic Receptor With Stabilising M		1e-06
2vt4_A	313	Turkey Beta1 Adrenergic Receptor With Stabilising M		1e-06
3oe0_A	499	Crystal Structure Of The Cxcr4 Chemokine Receptor I		2e-06
3odu_A	502	The 2.5 A Structure Of The Cxcr4 Chemokine Receptor		2e-06
3oe6_A	508	Crystal Structure Of The Cxcr4 Chemokine Receptor I		2e-06
4dkl_A	464	Crystal Structure Of The Mu-Opioid Receptor Bound T		5e-06
3rze_A	452	Structure Of The Human Histamine H1 Receptor In Com		7e-06
3vw7_A	484	Crystal Structure Of Human Protease-Activated Recep		8e-06
4ea3_B	434	Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI		1e-05
4daj_A	479	Structure Of The M3 Muscarinic Acetylcholine Recept		5e-05
4grv_A	510	The Crystal Structure Of The Neurotensin Receptor N		6e-05
2lnl_A	296	Structure Of Human Cxcr1 In Phospholipid Bilayers L		6e-05
3uon_A	467	Structure Of The Human M2 Muscarinic Acetylcholine		1e-04
4ej4_A	461	Structure Of The Delta Opioid Receptor Bound To Nal		1e-04
2ks9_A	364	Solution Conformation Of Substance P In Water Compl		1e-04
4gbr_A	309	N-terminal T4 Lysozyme Fusion Facilitates Crystalli		2e-04
3sn6_R	514	Crystal Structure Of The Beta2 Adrenergic Receptor-		3e-04
4djh_A	480	Structure Of The Human Kappa Opioid Receptor In Com		3e-04
3d4s_A	490	Cholesterol Bound Form Of Human Beta2 Adrenergic Re		7e-04

>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 9/123 (7%)
Query: 51  GNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWG 110
           GNVL I +I       G  Q         I  L+ ADL V +  +   A       WLWG
Sbjct: 28  GNVLVIAAI-------GSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWG 80
Query: 111 NMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSA 168
           +  C+L+  L +  +  S   L +I IDR+LA+  P +  S+ T +R    +   W +SA
Sbjct: 81  SFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISA 140
Query: 169 LCS 171
           L S
Sbjct: 141 LVS 143

>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 9/123 (7%)
Query: 51  GNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWG 110
           GNVL I +I       G  Q         I  L+ ADL V +  +   A       WLWG
Sbjct: 28  GNVLVIAAI-------GSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWG 80
Query: 111 NMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSA 168
           +  C+L+  L +  +  S   L +I IDR+LA+  P +  S+ T +R    +   W +SA
Sbjct: 81  SFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISA 140
Query: 169 LCS 171
           L S
Sbjct: 141 LVS 143

>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Cyclic Peptide Antagonist Cvx15 Length = 499

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 81  LHLSVADLF--VTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGID 138
           LHLSVADL   +T+   A +AV      W +GN  CK    +   +LY S +IL  I +D
Sbjct: 88  LHLSVADLLFVITLPFWAVDAV----ANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLD 143
Query: 139 RFLAVRYPMKSISTSSRCCKFV--IGAWILSALCSLPQ 174
           R+LA+ +   S        + V  +G WI + L ++P 
Sbjct: 144 RYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPD 181

>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In Complex With Small Molecule Antagonist It1t Length = 502

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 81  LHLSVADLF--VTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGID 138
           LHLSVADL   +T+   A +AV      W +GN  CK    +   +LY S +IL  I +D
Sbjct: 88  LHLSVADLLFVITLPFWAVDAV----ANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLD 143
Query: 139 RFLAVRYPMKSISTSSRCCKFV--IGAWILSALCSLPQ 174
           R+LA+ +   S        + V  +G WI + L ++P 
Sbjct: 144 RYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPD 181

>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Small Molecule Antagonist It1t In I222 Spacegroup Length = 508

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 81  LHLSVADLF--VTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGID 138
           LHLSVADL   +T+   A +AV      W +GN  CK    +   +LY S +IL  I +D
Sbjct: 88  LHLSVADLLFVITLPFWAVDAV----ANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLD 143
Query: 139 RFLAVRYPMKSISTSSRCCKFV--IGAWILSALCSLPQ 174
           R+LA+ +   S        + V  +G WI + L ++P 
Sbjct: 144 RYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPD 181

>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A Morphinan Antagonist Length = 464

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 80  ILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDR 139
           I +L++AD   T   L  ++V      W +GN+ CK+   +  ++++ S F L  + +DR
Sbjct: 56  IFNLALADALATS-TLPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDR 114
Query: 140 FLAVRYPMKSIS-TSSRCCKFV-IGAWILSALCSLP 173
           ++AV +P+K++   + R  K V +  WILS+   LP
Sbjct: 115 YIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLP 150

>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex With Doxepin Length = 452

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 63/127 (49%), Gaps = 9/127 (7%)
Query: 52  NVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGN 111
           N+L + ++R  R     + H+   +Y  I+ LSVADL V    +    ++    +W  G 
Sbjct: 26  NLLVLYAVRSER-----KLHTVGNLY--IVSLSVADLIVGAVVMPMNILYLLMSKWSLGR 78
Query: 112 MSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSIS--TSSRCCKFVIGAWILSAL 169
             C  +  +   +   S F + ++ IDR+ +V+ P++ +   T +R    ++GAW LS L
Sbjct: 79  PLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFL 138
Query: 170 CSLPQIG 176
             +P +G
Sbjct: 139 WVIPILG 145

>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1 (Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom Length = 484

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 80  ILHLSVAD-LFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGID 138
           +LHL+ AD LFV+V        +S + +W +G+  C+        ++Y S  ++ +I ID
Sbjct: 59  MLHLATADVLFVSVLPFKISYYFSGS-DWQFGSELCRFVTAAFYCNMYASILLMTVISID 117
Query: 139 RFLAVRYPMKSIS 151
           RFLAV YPM+S+S
Sbjct: 118 RFLAVVYPMQSLS 130

>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 107 WLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSIS--TSSRCCKFVIGAW 164
           W +GN  CK    +  ++++ STF L  + +DR++A+ +P++++   TSS+     +  W
Sbjct: 190 WPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIW 249
Query: 165 ILSALCSLP 173
            L+++  +P
Sbjct: 250 ALASVVGVP 258

>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor Length = 479

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 61/128 (47%), Gaps = 9/128 (7%)
Query: 50  VGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLW 109
           +GN+L I++ + N+  + +  +        +L L+ ADL + V  +     +     W  
Sbjct: 28  IGNILVIVAFKVNKQLKTVNNY-------FLLSLACADLIIGVISMNLFTTYIIMNRWAL 80
Query: 110 GNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPM--KSISTSSRCCKFVIGAWILS 167
           GN++C L+  +   +   S   L++I  DR+ ++  P+  ++  T+ R    +  AW++S
Sbjct: 81  GNLACDLWLSIDYVASNASVMNLLVISFDRYFSITRPLTYRAKRTTKRAGVMIGLAWVIS 140
Query: 168 ALCSLPQI 175
            +   P I
Sbjct: 141 FVLWAPAI 148

>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In Complex With Neurotensin (8-13) Length = 510

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 107 WLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPM--KSISTSSRCCKFVIGAW 164
           W +G+  C+ + FL+    Y +   +  + + R+LA+ +P   K++ + SR  KF+   W
Sbjct: 103 WAFGDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIW 162
Query: 165 ILSALCSLPQIGT 177
           + SAL ++P + T
Sbjct: 163 LASALLAIPMLFT 175

>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers Length = 296

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 107 WLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFV-IGAWI 165
           W++G   CK+   L+  + Y    +L  I +DR+LA+ +  ++++      KFV +G W 
Sbjct: 75  WIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQKRHLVKFVCLGCWG 134
Query: 166 LSALCSLP 173
           LS   SLP
Sbjct: 135 LSMNLSLP 142

>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine Receptor Bound To An Antagonist Length = 467

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 13/130 (10%)
Query: 50  VGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLW 109
           +GN+L ++SI+ NR  + +  +        +  L+ ADL + VF +    +++    W  
Sbjct: 39  IGNILVMVSIKVNRHLQTVNNY-------FLFSLACADLIIGVFSMNLYTLYTVIGYWPL 91
Query: 110 GNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAV----RYPMKSISTSSRCCKFVIGAWI 165
           G + C L+  L       S   L++I  DR+  V     YP+K   T+      +  AW+
Sbjct: 92  GPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVK--RTTKMAGMMIAAAWV 149
Query: 166 LSALCSLPQI 175
           LS +   P I
Sbjct: 150 LSFILWAPAI 159

>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To Naltrindole Length = 461

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 64/128 (50%), Gaps = 12/128 (9%)
Query: 49  FVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVE-W 107
            +GNVL +  I      R  +  +   +Y  I +L++AD   T       A   Y +E W
Sbjct: 29  LLGNVLVMFGI-----VRYTKLKTATNIY--IFNLALADALATSTLPFQSA--KYLMETW 79
Query: 108 LWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSIS--TSSRCCKFVIGAWI 165
            +G + CK    +  ++++ S F L ++ +DR++AV +P+K++   T ++     I  W+
Sbjct: 80  PFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWV 139
Query: 166 LSALCSLP 173
           L++   +P
Sbjct: 140 LASGVGVP 147

>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed With Nk1r Length = 364

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 79  LILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGID 138
            +++L+ A+  +  F       ++   EW +G   CK   F  + +++ S + +  +  D
Sbjct: 70  FLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFD 129
Query: 139 RFLAVRYPMKSISTSSRCCKFVIGA-WILSALCSLPQ 174
           R++A+ +P++    S+   K VI   W+L+ L + PQ
Sbjct: 130 RYMAIIHPLQP-RLSATATKVVICVIWVLALLLAFPQ 165

>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization Of A G Protein Coupled Receptor Length = 309

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 51  GNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWG 110
           GNVL I +I K    + +  +        I  L+ ADL + +  +   A    T  W +G
Sbjct: 22  GNVLVITAIAKFERLQTVTNY-------FITSLACADLVMGLAVVPFGAAHILTKTWTFG 74
Query: 111 NMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSA 168
           N  C+ +  + +  +  S   L +I +DR+ A+  P K  S+ T ++    ++  WI+S 
Sbjct: 75  NFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSG 134
Query: 169 LCS-LP 173
           L S LP
Sbjct: 135 LTSFLP 140

>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 51  GNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWG 110
           GNVL I +I K    + +  +        I  L+ ADL + +  +   A    T  W +G
Sbjct: 199 GNVLVITAIAKFERLQTVTNY-------FITSLACADLVMGLAVVPFGAAHILTKTWTFG 251
Query: 111 NMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSA 168
           N  C+ +  + +  +  S   L +I +DR+ A+  P K  S+ T ++    ++  WI+S 
Sbjct: 252 NFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSG 311
Query: 169 LCS-LP 173
           L S LP
Sbjct: 312 LTSFLP 317

>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex With Jdtic Length = 480

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 80  ILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDR 139
           I +L++AD  VT        V+     W +G++ CK+   +  ++++ S F L ++ +DR
Sbjct: 61  IFNLALADALVTTTMPFQSTVYLMN-SWPFGDVLCKIVLSIDYYNMFTSIFTLTMMSVDR 119
Query: 140 FLAVRYPMKSIS--TSSRCCKFVIGAWILSALCSLPQI 175
           ++AV +P+K++   T  +     I  W+LS+   +  I
Sbjct: 120 YIAVCHPVKALDFRTPLKAKIINICIWLLSSSVGISAI 157

>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 51  GNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWG 110
           GNVL I +I K    + +  +        I  L+ ADL + +  +   A       W +G
Sbjct: 58  GNVLVITAIAKFERLQTVTNY-------FITSLACADLVMGLAVVPFGAAHILMKMWTFG 110
Query: 111 NMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSA 168
           N  C+ +  + +  +  S + L +I +DR+ A+  P K  S+ T ++    ++  WI+S 
Sbjct: 111 NFWCEFWTSIDVLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSG 170
Query: 169 LCS-LP 173
           L S LP
Sbjct: 171 LTSFLP 176

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	177
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	2e-24
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	4e-21
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	6e-20
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	1e-17
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	1e-17
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	2e-17
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	6e-17
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	9e-17
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	1e-16
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	1e-16
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	1e-16
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	2e-16
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	2e-16
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	6e-16
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	3e-15

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364

 Score = 96.7 bits (241), Expect = 2e-24
 Identities = 27/138 (19%), Positives = 62/138 (44%), Gaps = 7/138 (5%)

Query: 38  AIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAG 97
           A    ++ V S VGNV+ +  I  ++                +++L+ A+  +  F    
Sbjct: 36  AAAYTVIVVTSVVGNVVVMWIILAHK-------RMRTVTNYFLVNLAFAEASMAAFNTVV 88

Query: 98  EAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCC 157
              ++   EW +G   CK   F  + +++ S + +  +  DR++A+ +P++   +++   
Sbjct: 89  NFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQPRLSATATK 148

Query: 158 KFVIGAWILSALCSLPQI 175
             +   W+L+ L + PQ 
Sbjct: 149 VVICVIWVLALLLAFPQG 166

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349

 Score = 87.4 bits (217), Expect = 4e-21
 Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 8/139 (5%)

Query: 38  AIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAG 97
           A  + +L +L F  N LT+    +   H+ LR    N    ++L+L+VADLF+       
Sbjct: 42  AAYMFLLIMLGFPINFLTLYVTVQ---HKKLRTPL-N---YILLNLAVADLFMVFGGFTT 94

Query: 98  EAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCC 157
               S    +++G   C L  F       ++ + LV++ I+R++ V  PM +        
Sbjct: 95  TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHA 154

Query: 158 KFVI-GAWILSALCSLPQI 175
              +   W+++  C+ P +
Sbjct: 155 IMGVAFTWVMALACAAPPL 173

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514

 Score = 78.8 bits (194), Expect = 1e-17
 Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 9/138 (6%)

Query: 38  AIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAG 97
            I+++++ +    GNVL I +I K      L+  +       I  L+ ADL + +  +  
Sbjct: 186 GIVMSLIVLAIVFGNVLVITAIAK---FERLQTVT----NYFITSLACADLVMGLAVVPF 238

Query: 98  EAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSR 155
            A    T  W +GN  C+ +  + +  +  S   L +I +DR+ A+  P K  S+ T ++
Sbjct: 239 GAAHILTKTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNK 298

Query: 156 CCKFVIGAWILSALCSLP 173
               ++  WI+S L S  
Sbjct: 299 ARVIILMVWIVSGLTSFL 316

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464

 Score = 78.1 bits (192), Expect = 1e-17
 Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 10/159 (6%)

Query: 19  SREPCLQHAPQLTSSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYT 78
           S   C Q       +A +   + +I+ V+   GN L +  I +       +  +   +Y 
Sbjct: 2   SHSLCPQTGSPSMVTAITIMALYSIVCVVGLFGNFLVMYVIVRYT-----KMKTATNIY- 55

Query: 79  LILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGID 138
            I +L++AD       L  ++V      W +GN+ CK+   +  ++++ S F L  + +D
Sbjct: 56  -IFNLALADALA-TSTLPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVD 113

Query: 139 RFLAVRYPMKSIS--TSSRCCKFVIGAWILSALCSLPQI 175
           R++AV +P+K++   T        +  WILS+   LP +
Sbjct: 114 RYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVM 152

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467

 Score = 77.8 bits (191), Expect = 2e-17
 Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 9/140 (6%)

Query: 38  AIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAG 97
            ++   L++++ +GN+L ++SI   +V+R L+  +       +  L+ ADL + VF +  
Sbjct: 27  VLVAGSLSLVTIIGNILVMVSI---KVNRHLQTVN----NYFLFSLACADLIIGVFSMNL 79

Query: 98  EAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSR 155
             +++    W  G + C L+  L       S   L++I  DR+  V  P+      T+  
Sbjct: 80  YTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKM 139

Query: 156 CCKFVIGAWILSALCSLPQI 175
               +  AW+LS +   P I
Sbjct: 140 AGMMIAAAWVLSFILWAPAI 159

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452

 Score = 76.3 bits (187), Expect = 6e-17
 Identities = 34/141 (24%), Positives = 66/141 (46%), Gaps = 9/141 (6%)

Query: 38  AIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAG 97
            ++L+ + +++   N+L + ++   R  R L           I+ LSVADL V    +  
Sbjct: 12  VVVLSTICLVTVGLNLLVLYAV---RSERKLHTVG----NLYIVSLSVADLIVGAVVMPM 64

Query: 98  EAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSR 155
             ++    +W  G   C  +  +   +   S F + ++ IDR+ +V+ P++     T +R
Sbjct: 65  NILYLLMSKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTR 124

Query: 156 CCKFVIGAWILSALCSLPQIG 176
               ++GAW LS L  +P +G
Sbjct: 125 ASATILGAWFLSFLWVIPILG 145

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score = 75.9 bits (186), Expect = 9e-17
 Identities = 31/138 (22%), Positives = 57/138 (41%), Gaps = 11/138 (7%)

Query: 38  AIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAG 97
             +   +AVL+ +GNVL   ++  N     L+  +       ++ L+ AD+ V V  +  
Sbjct: 25  ITVELAIAVLAILGNVLVCWAVWLNS---NLQNVT----NYFVVSLAAADIAVGVLAIPF 77

Query: 98  EAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSR 155
                 +  +      C       +     S F L+ I IDR++A+R P++   + T +R
Sbjct: 78  AIT--ISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTR 135

Query: 156 CCKFVIGAWILSALCSLP 173
               +   W+LS    L 
Sbjct: 136 AKGIIAICWVLSFAIGLT 153

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502

 Score = 75.7 bits (186), Expect = 1e-16
 Identities = 48/177 (27%), Positives = 74/177 (41%), Gaps = 12/177 (6%)

Query: 1   MNCSELIYIANLSLFDNISREPCLQHAPQLTSSASSRAIILAILAVLSFVGNVLTIISIR 60
           +  S+       S   +  +EPC +      +       I +I+ +   VGN L I+ + 
Sbjct: 16  IYTSDNYTEEMGSGDYDSMKEPCFREENANFNKIFL-PTIYSIIFLTGIVGNGLVILVMG 74

Query: 61  KNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFL 120
             +     +  S    Y   LHLSVADL   V  L   AV      W +GN  CK    +
Sbjct: 75  YQK-----KLRSMTDKY--RLHLSVADLLF-VITLPFWAV-DAVANWYFGNFLCKAVHVI 125

Query: 121 QMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFVI--GAWILSALCSLPQI 175
              +LY S +IL  I +DR+LA+ +   S        + V+  G WI + L ++P  
Sbjct: 126 YTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDF 182

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520

 Score = 75.3 bits (184), Expect = 1e-16
 Identities = 29/174 (16%), Positives = 65/174 (37%), Gaps = 17/174 (9%)

Query: 1   MNCSELIYIANLSLFDNISREPCLQHAPQLTSSASSRAIILAILAVLSFVGNVLTIISIR 60
           +N   ++   N +   NIS +                +++  ++     + N+  +++I 
Sbjct: 38  VNYDIIVRHYNYTGKLNISADKENSIKLT--------SVVFILICCFIILENIFVLLTIW 89

Query: 61  KNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFL 120
           K +     + H     Y  I +L+++DL   V   A   + S    +        L +  
Sbjct: 90  KTK-----KFHRPM--YYFIGNLALSDLLAGVAYTA-NLLLSGATTYKLTPAQWFLREGS 141

Query: 121 QMFSLYLSTFILVLIGIDRFLAVRYPM-KSISTSSRCCKFVIGAWILSALCSLP 173
              +L  S F L+ I I+R++ +      + S + R    +   W++S +    
Sbjct: 142 MFVALSASVFSLLAIAIERYITMLKMKLHNGSNNFRLFLLISACWVISLILGGL 195

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447

 Score = 75.1 bits (184), Expect = 1e-16
 Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 11/140 (7%)

Query: 38  AIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAG 97
             +   +AVL+ +GNVL   ++  N     L+  +       ++ L+ AD+ V V  +  
Sbjct: 35  ITVELAIAVLAILGNVLVCWAVWLNS---NLQNVT----NYFVVSLAAADIAVGVLAIPF 87

Query: 98  EAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSR 155
                 +  +      C       +     S F L+ I IDR++A+R P++   + T +R
Sbjct: 88  AIT--ISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTR 145

Query: 156 CCKFVIGAWILSALCSLPQI 175
               +   W+LS    L  +
Sbjct: 146 AKGIIAICWVLSFAIGLTPM 165

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 75.0 bits (184), Expect = 2e-16
 Identities = 29/141 (20%), Positives = 62/141 (43%), Gaps = 10/141 (7%)

Query: 38  AIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAG 97
            I + I  ++   GN + I    K    + L+  + N     I++L+ +D   ++     
Sbjct: 38  GIFIGICGIIGCGGNGIVIYLFTK---TKSLQTPA-N---MFIINLAFSDFTFSLVNGFP 90

Query: 98  EAVW-SYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSIS--TSS 154
                 +  +W++G  +CK++ F+     ++S   + +I IDR+  +  PM +    +  
Sbjct: 91  LMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHR 150

Query: 155 RCCKFVIGAWILSALCSLPQI 175
           R    +I  W+ S L ++  I
Sbjct: 151 RAFIMIIFVWLWSVLWAIGPI 171

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500

 Score = 74.7 bits (183), Expect = 2e-16
 Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 9/138 (6%)

Query: 38  AIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAG 97
            I+++++ +    GNVL I +I K      L+  +       I  L+ ADL + +  +  
Sbjct: 44  GIVMSLIVLAIVFGNVLVITAIAK---FERLQTVT----NYFITSLACADLVMGLAVVPF 96

Query: 98  EAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSR 155
            A       W +GN  C+ +  + +  +  S   L +I +DR+ A+  P K  S+ T ++
Sbjct: 97  GAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNK 156

Query: 156 CCKFVIGAWILSALCSLP 173
               ++  WI+S L S  
Sbjct: 157 ARVIILMVWIVSGLTSFL 174

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315

 Score = 72.8 bits (179), Expect = 6e-16
 Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 9/140 (6%)

Query: 38  AIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAG 97
           ++++A++ +L   GNVL I +I      + L+  +       I  L+ ADL V +  +  
Sbjct: 15  SLLMALVVLLIVAGNVLVIAAIGS---TQRLQTLT----NLFITSLACADLVVGLLVVPF 67

Query: 98  EAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSR 155
            A       WLWG+  C+L+  L +  +  S   L +I IDR+LA+  P +  S+ T +R
Sbjct: 68  GATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRAR 127

Query: 156 CCKFVIGAWILSALCSLPQI 175
               +   W +SAL S   I
Sbjct: 128 AKVIICTVWAISALVSFLPI 147

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481

 Score = 71.3 bits (174), Expect = 3e-15
 Identities = 38/173 (21%), Positives = 65/173 (37%), Gaps = 13/173 (7%)

Query: 9   IANLSLFDNISREPCLQHAPQLTSSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGL 68
           ++ LS   N +               +  A+    L +    GN L  +++ K    R L
Sbjct: 13  LSQLSSHLNYTCGAENSTGASQARPHAYYALSYCALILAIVFGNGLVCMAVLK---ERAL 69

Query: 69  RQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYT-VEWLWGNMSCKLFKFLQMFSLYL 127
           +  +      L++ L+VADL V    +        T   W +  + C +F  L +     
Sbjct: 70  QTTT----NYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTA 125

Query: 128 STFILVLIGIDRFLAVRYPMK-----SISTSSRCCKFVIGAWILSALCSLPQI 175
           S + L  I IDR+ AV  P+        S+  R    +   W+L+   S P +
Sbjct: 126 SIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLL 178

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	177
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	99.95
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	99.95
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	99.95
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	99.93
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	99.93
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	99.93
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	99.93
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	99.92
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	99.92
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	99.92
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	99.92
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	99.92
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	99.92
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	99.92
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	99.92
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	99.92
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	99.91
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	99.9
1hll_A	32	Alpha-2A adrenergic receptor; helix-linker-helix,	98.44
2lot_A	64	Apelin receptor; membrane protein; NMR {Homo sapie	96.46

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=99.95  E-value=1.5e-27  Score=196.96  Aligned_cols=141  Identities=23%  Similarity=0.401  Sum_probs=123.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcc--ccccc
Q psy5300          32 SSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYT--VEWLW  109 (177)
Q Consensus        32 ~~~~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~--~~~~~  109 (177)
                      ..+....++|.+++++|++||+++++++.+++++|    +.+++.|+|+.|||++|++.+++.+|+.+.....  +.|.+
T Consensus        30 ~~~v~~~~~~~~i~~~g~~gN~lvi~~i~~~~~~r----~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~  105 (510)
T 4grv_A           30 YSKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQ----SLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAF  105 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCC----CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEh
Confidence            35667788899999999999999999999887665    1227899999999999999999999988877653  46999


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc--cccccchhHHHHHHHHHHHHHhhcCccC
Q psy5300         110 GNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSALCSLPQIG  176 (177)
Q Consensus       110 ~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~--~~~t~~~~~~~i~~~W~~s~~~~~p~~~  176 (177)
                      |+..|++..++...+..+|++++++||+|||+||++|++  ...+++++..+++++|++++++++|+++
T Consensus       106 g~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~ai~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~  174 (510)
T 4grv_A          106 GDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIPMLF  174 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCCCSCCHHHHHHHHHHHHHHHTTHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHheEEEeccccccccccccccceeehHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999997  5689999999999999999999999864

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=99.95  E-value=3.7e-26  Score=178.60  Aligned_cols=138  Identities=23%  Similarity=0.339  Sum_probs=126.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHccccccccc
Q psy5300          32 SSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGN  111 (177)
Q Consensus        32 ~~~~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~  111 (177)
                      ........++.+++++|++||+++++++.+++++|       ++.|+++.|||++|++.++...|........+.|..++
T Consensus        36 ~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~~~-------~~~~~ll~~Lai~Dll~~~~~~~~~~~~~~~~~~~~~~  108 (349)
T 1u19_A           36 WQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLR-------TPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGP  108 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCC-------SHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHheEeehhhhhhhc-------CchhHHHHHHHHHHHHHHHhcchHHHHHHhcCeeeCCh
Confidence            34566778889999999999999999999999988       99999999999999999998888888777777899999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc-cccccchhHHHHHHHHHHHHHhhcCccC
Q psy5300         112 MSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK-SISTSSRCCKFVIGAWILSALCSLPQIG  176 (177)
Q Consensus       112 ~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~-~~~t~~~~~~~i~~~W~~s~~~~~p~~~  176 (177)
                      ..|++..++...+..+|+++++++|+|||+||++|++ +..+++++...++++|+++++.++|+++
T Consensus       109 ~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~  174 (349)
T 1u19_A          109 TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLV  174 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHHSGGGT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCccceeeccchhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999997 4478888999999999999999999864

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=99.95  E-value=4.3e-26  Score=179.65  Aligned_cols=135  Identities=21%  Similarity=0.405  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccccccchh
Q psy5300          35 SSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSC  114 (177)
Q Consensus        35 ~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~~~C  114 (177)
                      ....+++.+++++|++||+++++++.+++++|       ++.|+++.|||++|++.++...|........+.|..++..|
T Consensus        33 ~~~~~~~~~i~~~gi~gN~lvi~vi~~~~~l~-------~~~~~~l~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C  105 (364)
T 2ks9_A           33 VLWAAAYTVIVVTSVVGNVVVMWIILAHKRMR-------TVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYC  105 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCC-------CHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSCSSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHH
Confidence            44577899999999999999999999999998       99999999999999999988888887777777899999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhHHHHHHHHHHHHHhhcCccC
Q psy5300         115 KLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFVIGAWILSALCSLPQIG  176 (177)
Q Consensus       115 ~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~  176 (177)
                      ++..++...+..+|+++++++|+|||+||++|+++..+++++..+++++|+++++.++|+++
T Consensus       106 ~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~~~~~~~~~i~~~W~~s~~~~~p~~~  167 (364)
T 2ks9_A          106 KFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQPRLSATATKVVICVIWVLALLLAFPQGY  167 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHHHHhHHHH
Confidence            99999999999999999999999999999999997788899999999999999999998764

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=99.93  E-value=9.1e-26  Score=182.83  Aligned_cols=138  Identities=24%  Similarity=0.418  Sum_probs=128.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHccccccccc
Q psy5300          32 SSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGN  111 (177)
Q Consensus        32 ~~~~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~  111 (177)
                      .......+++.+++++|++||+++++++.+++++|       ++.|+|+.|||++|++.+++..|..+.....+.|..+.
T Consensus        21 ~~~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~-------~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~   93 (467)
T 3uon_A           21 FEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQ-------TVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGP   93 (467)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGC-------SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCCSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHheeeeeecCccC-------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCc
Confidence            44567888899999999999999999999999998       99999999999999999999999988888888999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc--cccccchhHHHHHHHHHHHHHhhcCccC
Q psy5300         112 MSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSALCSLPQIG  176 (177)
Q Consensus       112 ~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~--~~~t~~~~~~~i~~~W~~s~~~~~p~~~  176 (177)
                      ..|++..++...+..+|++++++||+|||+||++|++  ...+++++..+++++|++++++++|+++
T Consensus        94 ~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~  160 (467)
T 3uon_A           94 VVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAIL  160 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSGGGCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999997  5678999999999999999999988753

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=99.93  E-value=1.3e-25  Score=184.73  Aligned_cols=137  Identities=24%  Similarity=0.406  Sum_probs=125.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccccc
Q psy5300          31 TSSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWG  110 (177)
Q Consensus        31 ~~~~~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~  110 (177)
                      ........+++.+++++|++||+++++++.+++++|       ++.|+|+.|||++|++.++..+|+.+.....+.|.++
T Consensus        37 ~~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~l~-------~~~~~~l~nLAiaDll~~~~~~p~~~~~~~~~~w~~~  109 (500)
T 2rh1_A           37 EVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQ-------TVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFG  109 (500)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGC-------SHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCCSH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccC-------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCC
Confidence            344566778899999999999999999999999998       9999999999999999999999998888887899999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc--cccccchhHHHHHHHHHHHHHhhcCc
Q psy5300         111 NMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSALCSLPQ  174 (177)
Q Consensus       111 ~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~--~~~t~~~~~~~i~~~W~~s~~~~~p~  174 (177)
                      ...|++..++..++..+|++++++||+|||+||++|++  ...+++++..+++++|+++++.+++|
T Consensus       110 ~~~C~~~~~~~~~~~~~Si~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~p  175 (500)
T 2rh1_A          110 NFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLP  175 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHeeccCcCCeeecccceeehhhHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999997  45789999999999999999988544

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=99.93  E-value=3.9e-25  Score=170.06  Aligned_cols=135  Identities=27%  Similarity=0.426  Sum_probs=118.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccccccc
Q psy5300          33 SASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNM  112 (177)
Q Consensus        33 ~~~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~~  112 (177)
                      .+....++|.+++++|++||+++++++.++|++|       +++|+++.|||++|++.++ ..|+...... ++|..|+.
T Consensus        10 ~~~i~~i~y~ii~i~gv~gN~lvi~vi~~~~~lr-------t~~n~~i~nLAvaDll~~l-~~p~~~~~~~-~~~~~~~~   80 (296)
T 2lnl_A           10 NKYVVIIAYALVFLLSLLGNSLVMLVILYSRVGR-------SVTDVYLLNLALADLLFAL-TLPIWAASKV-NGWIFGTF   80 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCC-------STTHHHHHHHHHHHHHHHH-HHHHHHHHHH-SSSCCSSH
T ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-------ChHHHHHHHHHHHHHHHHH-hhhHHHhhcc-CCCccchh
Confidence            4566778899999999999999999999999999       9999999999999999876 4666655544 57999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc-cccccchhHHHHHHHHHHHHHhhcCccC
Q psy5300         113 SCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK-SISTSSRCCKFVIGAWILSALCSLPQIG  176 (177)
Q Consensus       113 ~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~-~~~t~~~~~~~i~~~W~~s~~~~~p~~~  176 (177)
                      .|+...+....+..+|+++++++|+|||.|+++|++ +...+++...+++++|+.+++.++|+..
T Consensus        81 ~c~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~~~~~~~~~~~~~~W~~s~~~~~p~~~  145 (296)
T 2lnl_A           81 LCKVVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQKRHLVKFVCLGCWGLSMNLSLPFFL  145 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhhccccchhhhhhhHheehHHHHHHHHHhcchhh
Confidence            999999999999999999999999999999999998 4445566777788899999999988753

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=99.93  E-value=1.9e-25  Score=180.67  Aligned_cols=141  Identities=25%  Similarity=0.429  Sum_probs=127.3

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHccccc
Q psy5300          28 PQLTSSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEW  107 (177)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~  107 (177)
                      ...........+++.+++++|++||+++++++.+++++|       ++.|+|+.|||++|++.++. .|+.......+.|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~gi~gN~lvi~~~~~~~~~~-------~~~~~~l~~La~~Dll~~~~-~p~~~~~~~~~~~   82 (464)
T 4dkl_A           11 SPSMVTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMK-------TATNIYIFNLALADALATST-LPFQSVNYLMGTW   82 (464)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTC-------SHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSC
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHeehhhhhccccC-------CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCc
Confidence            334556678888999999999999999999999999998       99999999999999999876 8888888887899


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc--cccccchhHHHHHHHHHHHHHhhcCccC
Q psy5300         108 LWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSALCSLPQIG  176 (177)
Q Consensus       108 ~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~--~~~t~~~~~~~i~~~W~~s~~~~~p~~~  176 (177)
                      ..+...|++..++..++..+|++++++||+|||+||++|++  ...+++++..+++++|++++++++|+++
T Consensus        83 ~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~~  153 (464)
T 4dkl_A           83 PFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMF  153 (464)
T ss_dssp             CSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccHhHHhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999997  5578999999999999999999988764

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=99.92  E-value=9.8e-25  Score=177.50  Aligned_cols=136  Identities=24%  Similarity=0.347  Sum_probs=123.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHccccccccc
Q psy5300          32 SSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGN  111 (177)
Q Consensus        32 ~~~~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~  111 (177)
                      .......+++.+++++|++||+++++++.+++++|       ++.|+|+.|||++|++.++..+|..+....  .|..+.
T Consensus        19 ~~~~~~~~~~~~i~~~gi~gN~lvi~~~~~~~~~~-------~~~~~~l~~La~aDll~~~~~~p~~~~~~~--~~~~~~   89 (488)
T 3eml_A           19 MGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQ-------NVTNYFVVSLAAADIAVGVLAIPFAITIST--GFCAAC   89 (488)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGC-------SSHHHHHHHHHHHHHHHHHTHHHHHHHHTT--CCEECH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHhhhheeeccccC-------ChHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cccccc
Confidence            34467788899999999999999999999999998       999999999999999999988987776543  678888


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc--cccccchhHHHHHHHHHHHHHhhcCccC
Q psy5300         112 MSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSALCSLPQIG  176 (177)
Q Consensus       112 ~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~--~~~t~~~~~~~i~~~W~~s~~~~~p~~~  176 (177)
                      ..|++..++...+..+|++++++||+|||++|++|++  ...+++++..+++++|++++++++|+++
T Consensus        90 ~~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~~~~~~~~~  156 (488)
T 3eml_A           90 HGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPML  156 (488)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGSTTTSCHHHHHHHHHHHHHHHHHHHTTGGG
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEecccccccccCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999997  5679999999999999999999998875

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=99.92  E-value=6e-25  Score=178.90  Aligned_cols=139  Identities=23%  Similarity=0.362  Sum_probs=121.7

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHH-Hcccccc
Q psy5300          30 LTSSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVW-SYTVEWL  108 (177)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~-~~~~~~~  108 (177)
                      ....+....+++.+++++|++||+++++++.+++++|       ++.|+|+.|||++|++.++. .|+.... ...+.|.
T Consensus        16 ~~~~~~~~~~~~~~i~~~~i~gN~lvi~~~~~~~~l~-------~~~~~~l~~La~aDll~~~~-~~~~~~~~~~~~~~~   87 (484)
T 3vw7_A           16 SSWLTLFVPSVYTGVFVVSLPLNIMAIVVFILKMKVK-------KPAVVYMLHLATADVLFVSV-LPFKISYYFSGSDWQ   87 (484)
T ss_dssp             CHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC-------CHHHHHHHHHHHHHHHHHTT-HHHHHHHHHTTSCCC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-------CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCcc
Confidence            3455677888899999999999999999999999998       99999999999999999765 5554444 4445899


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc--cccccchhHHHHHHHHHHHHHhhcCccC
Q psy5300         109 WGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSALCSLPQIG  176 (177)
Q Consensus       109 ~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~--~~~t~~~~~~~i~~~W~~s~~~~~p~~~  176 (177)
                      .+...|++..++...+..+|++++++||+|||+||++|++  ...+++++..+++++|++++++++|+++
T Consensus        88 ~~~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~  157 (484)
T 3vw7_A           88 FGSELCRFVTAAFYCNMYASILLMTVISIDRFLAVVYPMQSLSWRTLGRASFTCLAIWALAIAGVVPLLL  157 (484)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHHHHHHHHHheEEEcccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999997  4678999999999999999999998865

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=99.92  E-value=3e-25  Score=183.50  Aligned_cols=133  Identities=19%  Similarity=0.279  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccccccchh
Q psy5300          35 SSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSC  114 (177)
Q Consensus        35 ~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~~~C  114 (177)
                      ....+++.+++++|++||+++++++.+++++|       ++.|+|+.|||++|++.++...|..+.. ....|..+...|
T Consensus        64 ~~~~~~~~~i~~~g~~gN~lvi~vi~~~~~lr-------~~~~~~l~nLA~aDll~~~~~~p~~~~~-~~~~~~~~~~~c  135 (520)
T 3v2y_A           64 KLTSVVFILICCFIILENIFVLLTIWKTKKFH-------RPMYYFIGNLALSDLLAGVAYTANLLLS-GATTYKLTPAQW  135 (520)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTC-------SHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGGTTSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc-------ChHHHHHHHHHHHHHHHHHHHHHHHHHc-cccceeeCcccc
Confidence            67788899999999999999999999999999       9999999999999999999888876665 456788899999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc--cccccchhHHHHHHHHHHHHHhhcCccC
Q psy5300         115 KLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSALCSLPQIG  176 (177)
Q Consensus       115 ~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~--~~~t~~~~~~~i~~~W~~s~~~~~p~~~  176 (177)
                      ++..++...+..+|++++++||+|||+||+ |++  ...+++++..+++++|++++++++|+++
T Consensus       136 ~~~~~~~~~~~~~S~~~l~~isidRy~aI~-p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~  198 (520)
T 3v2y_A          136 FLREGSMFVALSASVFSLLAIAIERYITML-KMKLHNGSNNFRLFLLISACWVISLILGGLPIM  198 (520)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C-------CCHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhEEe-ccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999 997  5689999999999999999999988875

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=99.92  E-value=5.5e-25  Score=179.87  Aligned_cols=138  Identities=28%  Similarity=0.402  Sum_probs=124.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHccccccc
Q psy5300          30 LTSSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLW  109 (177)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~  109 (177)
                      ....+....+++.+++++|++||+++++++.+++++|       ++.|+|+.|||++|++.+ +..|..+..... .|.+
T Consensus        44 ~~~~~~~~~~~~~~i~~~g~~gN~lvi~~~~~~~~l~-------~~~~~~l~~La~~Dll~~-~~~p~~~~~~~~-~~~~  114 (502)
T 3odu_A           44 ANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLR-------SMTDKYRLHLSVADLLFV-ITLPFWAVDAVA-NWYF  114 (502)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSC-------CHHHHHHHHHHHHHHHHH-TTHHHHHHHHHT-CCCS
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-------CHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc-CCcC
Confidence            3445677888999999999999999999999999998       999999999999999995 578877776654 7999


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc--cccccchhHHHHHHHHHHHHHhhcCccC
Q psy5300         110 GNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSALCSLPQIG  176 (177)
Q Consensus       110 ~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~--~~~t~~~~~~~i~~~W~~s~~~~~p~~~  176 (177)
                      +...|++..++..++..+|++++++||+|||+||++|++  ...+++++..+++++|++++++++|+++
T Consensus       115 ~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~  183 (502)
T 3odu_A          115 GNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFI  183 (502)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHTHHHHHTHHHHHHTTHHHHH
T ss_pred             CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhheecccccccccchhHHHHhhhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999997  5678888899999999999999998753

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=99.92  E-value=2.7e-25  Score=180.83  Aligned_cols=137  Identities=25%  Similarity=0.385  Sum_probs=121.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcc-ccccccc
Q psy5300          33 SASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYT-VEWLWGN  111 (177)
Q Consensus        33 ~~~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~-~~~~~~~  111 (177)
                      .+....+++.+++++|++||+++++++.+++++|       ++.|+|+.|||++|++.++..+|..+..... +.|..+.
T Consensus        37 ~~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~-------~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~  109 (481)
T 3pbl_A           37 PHAYYALSYCALILAIVFGNGLVCMAVLKERALQ-------TTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSR  109 (481)
T ss_dssp             ----CCSHHHHHHHHHHHHHHHHHHHHHHCSTTC-------SHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTSCCCSCH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhHHhhhccccC-------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCc
Confidence            3455667889999999999999999999999998       9999999999999999999899987776655 5789999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcc-----ccccchhHHHHHHHHHHHHHhhcCccC
Q psy5300         112 MSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKS-----ISTSSRCCKFVIGAWILSALCSLPQIG  176 (177)
Q Consensus       112 ~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~~-----~~t~~~~~~~i~~~W~~s~~~~~p~~~  176 (177)
                      ..|++..++..++..+|++++++||+|||++|++|+++     ..+.+++..+++++|++++++++|+++
T Consensus       110 ~~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~  179 (481)
T 3pbl_A          110 ICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLF  179 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999963     567788899999999999999998764

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=99.92  E-value=2.5e-24  Score=174.36  Aligned_cols=137  Identities=20%  Similarity=0.398  Sum_probs=124.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHH-hhHHHHHHccccccccc
Q psy5300          33 SASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFC-LAGEAVWSYTVEWLWGN  111 (177)
Q Consensus        33 ~~~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~-~~~~~~~~~~~~~~~~~  111 (177)
                      ......+++.+++++|++||+++++++.+++++|       ++.|++++|||++|++.++.. .|..+.....++|..+.
T Consensus        33 ~~~~~~i~~~ii~i~gi~gN~lvi~vi~~~~~~~-------~~~~~ll~~LaiaDll~~~~~~~p~~~~~~~~~~~~~~~  105 (448)
T 2z73_A           33 VYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQ-------TPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGF  105 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTC-------STTHHHHHHHHHHHHHHHHHHSTTHHHHHHHTTSCCSHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHhhhhhhhccccC-------CccchHHHHHHHHHHHHHHHHhccHHHHHHhcCCccCCH
Confidence            4556777889999999999999999999999888       899999999999999998874 78777777778899999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc--cccccchhHHHHHHHHHHHHHhhcCccC
Q psy5300         112 MSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSALCSLPQIG  176 (177)
Q Consensus       112 ~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~--~~~t~~~~~~~i~~~W~~s~~~~~p~~~  176 (177)
                      ..|++..++...+..+|+++++++|+|||++|++|++  ...+++++..+++++|++++++++|+++
T Consensus       106 ~~C~~~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~~~~~~~~~  172 (448)
T 2z73_A          106 AACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIF  172 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTCCCCCHHHHHHHHHHHHHHHHHHHSGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceechhHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999997  5778999999999999999999988764

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=99.92  E-value=9e-25  Score=176.31  Aligned_cols=134  Identities=24%  Similarity=0.445  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccccccchh
Q psy5300          35 SSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSC  114 (177)
Q Consensus        35 ~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~~~C  114 (177)
                      ....+++.+++++|++||+++++++.+++++|       ++.|+|+.|||++|++.++...|..+.....+.|..+...|
T Consensus         9 ~~~~~~~~~~~~~gi~gN~~vi~~~~~~~~~~-------~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C   81 (452)
T 3rze_A            9 MPLVVVLSTICLVTVGLNLLVLYAVRSERKLH-------TVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLC   81 (452)
T ss_dssp             CGGGTHHHHHHHHHHHHHHHHHHHHHHCSTTC-------CGGGHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCSSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCchhH
Confidence            45567889999999999999999999999998       99999999999999999999999999988888999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc--cccccchhHHHHHHHHHHHHHhhcCcc
Q psy5300         115 KLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSALCSLPQI  175 (177)
Q Consensus       115 ~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~--~~~t~~~~~~~i~~~W~~s~~~~~p~~  175 (177)
                      ++..++...+..+|++++++||+|||++|++|++  ...+++++..+++++|++++++++|.+
T Consensus        82 ~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~p~~  144 (452)
T 3rze_A           82 LFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWVIPIL  144 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCTTTTSSHHHHHHHHHHHHHHHGGGHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccccccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999997  567999999999999999999998865

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=99.92  E-value=2.6e-24  Score=173.37  Aligned_cols=137  Identities=24%  Similarity=0.343  Sum_probs=123.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccccc
Q psy5300          31 TSSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWG  110 (177)
Q Consensus        31 ~~~~~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~  110 (177)
                      ........+++.+++++|++||+++++++.+++++|       ++.|+++.|||++|++.++..+|..+....  .|..+
T Consensus        28 ~~~~~~~~~i~~~i~~~gi~gN~~vl~~~~~~~~l~-------~~~~~~l~~La~~Dll~~~~~~p~~~~~~~--~~~~~   98 (447)
T 4eiy_A           28 IMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQ-------NVTNYFVVSLAAADIAVGVLAIPFAITIST--GFCAA   98 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGC-------SHHHHHHHHHHHHHHHHHHTHHHHHHHHHT--TCEEE
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccccC-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccccC
Confidence            345567778899999999999999999999999998       999999999999999999888887766443  66778


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc--cccccchhHHHHHHHHHHHHHhhcCccC
Q psy5300         111 NMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSALCSLPQIG  176 (177)
Q Consensus       111 ~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~--~~~t~~~~~~~i~~~W~~s~~~~~p~~~  176 (177)
                      ...|++..++...+..+|++++++||+|||++|++|++  ...+++++..+++++|++++++++|+++
T Consensus        99 ~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~Wi~s~~~~~~~~~  166 (447)
T 4eiy_A           99 CHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPML  166 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHSCHHHHHHHHHHHHHHHHHHHTGGGG
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHeEEecccccchhhhHHHHHHHHhHHHHHHHHHHHhhhh
Confidence            88999999999999999999999999999999999997  5689999999999999999999998864

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=99.91  E-value=8.1e-25  Score=168.45  Aligned_cols=137  Identities=29%  Similarity=0.498  Sum_probs=126.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHccccccccc
Q psy5300          32 SSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGN  111 (177)
Q Consensus        32 ~~~~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~  111 (177)
                      ..+....+++.+++++|++||+++++++.+++++|       ++.|+++.|||++|++.++...|........+.|..++
T Consensus         9 ~~~~~~~~~~~~~~~~gi~gN~lvi~~i~~~~~~~-------~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~   81 (315)
T 4amj_A            9 QWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQ-------TLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGS   81 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGC-------CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHSSCCSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHhhhchhhc-------chHHHHHHHHHHHHHHHHHHhccHHHHHHhcCCeeccc
Confidence            34566778899999999999999999999999988       99999999999999999888888888888878999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc--cccccchhHHHHHHHHHHHHHhhcCcc
Q psy5300         112 MSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSALCSLPQI  175 (177)
Q Consensus       112 ~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~--~~~t~~~~~~~i~~~W~~s~~~~~p~~  175 (177)
                      ..|++..++...+..+|+++++++|+|||+||++|++  ...+++++..+++++|+++++.++|++
T Consensus        82 ~~C~~~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~  147 (315)
T 4amj_A           82 FLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPI  147 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhHHHhhhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999997  457999999999999999999987765

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=99.90  E-value=7.4e-24  Score=174.67  Aligned_cols=137  Identities=26%  Similarity=0.429  Sum_probs=126.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHccccccccc
Q psy5300          32 SSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGN  111 (177)
Q Consensus        32 ~~~~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~  111 (177)
                      .......+++.+++++|++||+++++++.+++++|       ++.|+++.|||++|++.++..+|..+.....+.|..+.
T Consensus       180 ~~~~~~~i~~~ii~~~gi~gN~lvi~vi~~~~~lr-------~~~~~ll~nLAiaDll~~~~~~p~~~~~~~~~~~~~~~  252 (514)
T 3sn6_R          180 VWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQ-------TVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGN  252 (514)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGC-------CHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHTSCCSCS
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHhhhheecccccc-------cHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCeeCCc
Confidence            44566778899999999999999999999999998       99999999999999999998899888888888999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc--cccccchhHHHHHHHHHHHHHhhcCcc
Q psy5300         112 MSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSALCSLPQI  175 (177)
Q Consensus       112 ~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~--~~~t~~~~~~~i~~~W~~s~~~~~p~~  175 (177)
                      ..|++..++..++..+|++++++||+|||++|++|++  ...+++++..+++++|++++++++||+
T Consensus       253 ~~C~~~~~l~~~~~~~S~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~Wi~s~l~~~~p~  318 (514)
T 3sn6_R          253 FWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPI  318 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHCCHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccchhccchHHHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999999999997  457999999999999999999886654

>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A

Probab=98.44  E-value=6.9e-08  Score=49.09  Aligned_cols=22  Identities=23%  Similarity=0.418  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHhhhhcCCc
Q psy5300         127 LSTFILVLIGIDRFLAVRYPMK  148 (177)
Q Consensus       127 ~s~~~l~~isidRy~ai~~p~~  148 (177)
                      +|++++++||+|||+||++|++
T Consensus         2 ~Si~~L~~is~dRy~aI~~Pl~   23 (32)
T 1hll_A            2 SSIVHLCAISLDRYWSITQAIE   23 (32)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHG
T ss_pred             cHHHHHHHHHHHHHHHhhhhhh
Confidence            6899999999999999999996

>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A

Probab=96.46  E-value=6.9e-05  Score=43.95  Aligned_cols=31  Identities=19%  Similarity=0.298  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy5300          36 SRAIILAILAVLSFVGNVLTIISIRKNRVHR   66 (177)
Q Consensus        36 ~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~   66 (177)
                      ...++|.+++++|++||+++++++.++|..+
T Consensus        30 ~lp~~Y~lvFvlGl~GN~lvl~v~~~~~~~~   60 (64)
T 2lot_A           30 LIPAIYMLVFLLGTTGNGLVLWTVFRKKGHH   60 (64)
T ss_dssp             SSHHHHHHTTTTTTTSSSSHHHHHHHHSSSC
T ss_pred             HHHHHHHHHHHHHHhhhhhheeeeeEecccc
Confidence            6678899999999999999999998887554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	177
d1u19a_	348	f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId:	2e-06

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 7/133 (5%)

Query: 38  AIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAG 97
           A  + +L +L F  N LT+    +++            +  ++L+L+VADLF+       
Sbjct: 41  AAYMFLLIMLGFPINFLTLYVTVQHK-------KLRTPLNYILLNLAVADLFMVFGGFTT 93

Query: 98  EAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCC 157
               S    +++G   C L  F       ++ + LV++ I+R++ V  PM +        
Sbjct: 94  TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHA 153

Query: 158 KFVIGAWILSALC 170
              +    + AL 
Sbjct: 154 IMGVAFTWVMALA 166

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	177
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	99.91

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=2.2e-23  Score=161.24  Aligned_cols=137  Identities=23%  Similarity=0.349  Sum_probs=123.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccccccc
Q psy5300          33 SASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNM  112 (177)
Q Consensus        33 ~~~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~~  112 (177)
                      .......++.+++++|++||+++++++.++|++|       ++.|+++.|||++|++.++...|........+.|..+..
T Consensus        36 ~~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr-------~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~  108 (348)
T d1u19a_          36 QFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLR-------TPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPT  108 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCC-------SHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHeehhhhccCCCC-------CHhHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccCch
Confidence            4556777888999999999999999999999998       999999999999999999988998888888888889999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc-cccccchhHHHHHHHHHHHHHhhcCccC
Q psy5300         113 SCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK-SISTSSRCCKFVIGAWILSALCSLPQIG  176 (177)
Q Consensus       113 ~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~-~~~t~~~~~~~i~~~W~~s~~~~~p~~~  176 (177)
                      .|+...+....+..++.++++++++|||.++++|++ +..++++....+..+|.+++++..|+.+
T Consensus       109 ~c~~~~~~~~~~~~~s~~~l~~is~~R~~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (348)
T d1u19a_         109 GCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLV  173 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHHSGGGT
T ss_pred             hhhhhhhccccceeeecchhhhhhcccceeeeccccccccccccccccceeeehhhhheeccccc
Confidence            999999999999999999999999999999999998 5567777777788889999888888754