Psyllid ID: psy531

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80
Protein Sequence
MGMWLNLAFLETNLHHISLQVLLIITLVHFKGVSPDISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKNNK
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEccEEEEEEEccccccccccEEEEEEHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEEEEEEEEEEEEEEcccccccccEEEEEEEccEEEEEccccccccccccEEEEEEcEEEEccc
Coil and Loop (DISEMBL)
MGMWLNLAFLETNLHHISLQVLLIITLVHfkgvspdisnAVHITALLGESvvfncgvdfpgdtpvpyVLQWEKKIVKNNK
Flexible Loop (DISEMBL)
MGMWLNLAFLETNLHHISLQVLLIITLVHFKGVSPDISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKNNK
Low Complexity Region (SEG)
MGMWLNLAFLETNLHHISLQVLLIITLVHFKGVSPDISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKNNK
Disordered region (IsUnstruct)
**MWLNLAFLETNLHHISLQVLLIITLVHFKGVSPDISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV****
Disordered Region (DISOPRED)
**MW*NLAFLETNLHHISLQVLLIITLVHFKGVSPDISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK******
Disordered Region (DISEMBL)
MGMWLNLAFLETNLHHISLQVLLIITLVHFKGVSPDISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKNNK
Disordered Region (DISPRO)
***WLNLAFLETNLHHISLQVLLIITLVHFKGVSPDISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKNN*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGMWLNLAFLETNLHHISLQVLLIITLVHFKGVSPDISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKNNK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	80	2.2.26 [Sep-21-2011]
Q967D7	1531	Protein turtle OS=Drosoph	no	N/A	0.462	0.024	0.729	9e-12

>sp|Q967D7|TUTL_DROME Protein turtle OS=Drosophila melanogaster GN=tutl PE=2 SV=2

 Score = 68.9 bits (167), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 27/37 (72%), Positives = 33/37 (89%)

Query: 39  NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI 75
           +AVHITA+LGE V+FNC V+FP D PVPYVLQW+KK+
Sbjct: 134 DAVHITAILGEGVIFNCHVEFPNDHPVPYVLQWDKKV 170

Essential protein that plays a role in the establishment of coordinated motor control.
Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
170032303	1482	turtle protein_ [Culex quinquefasciatus]	0.712	0.038	0.666	2e-13
312374066	323	hypothetical protein AND_16509 [Anophele	0.5	0.123	0.825	1e-12
357618966	1094	hypothetical protein KGM_15726 [Danaus p	0.5	0.036	0.8	4e-12
158297293	1478	AGAP007928-PA [Anopheles gambiae str. PE	0.462	0.025	0.837	5e-12
157113626	1300	turtle protein, isoform [Aedes aegypti]	0.462	0.028	0.810	8e-12
340728223	1027	PREDICTED: protein turtle-like [Bombus t	0.625	0.048	0.648	2e-11
383861456	1386	PREDICTED: LOW QUALITY PROTEIN: protein	0.462	0.026	0.810	2e-11
194758581	1534	GF15018 [Drosophila ananassae] gi|190615	0.725	0.037	0.5	4e-11
322800563	66	hypothetical protein SINV_00466 [Solenop	0.512	0.621	0.756	9e-11
195401062	1552	GJ16222 [Drosophila virilis] gi|19415600	0.462	0.023	0.756	3e-10

>gi|170032303|ref|XP_001844021.1| turtle protein_ [Culex quinquefasciatus] gi|167872307|gb|EDS35690.1| turtle protein [Culex quinquefasciatus]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/57 (66%), Positives = 42/57 (73%)

Query: 18  SLQVLLIITLVHFKGVSPDISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK 74
           S  +LL ITL       P   +AVHITA+LGESVVFNC V+FPGD PVPYVLQWEKK
Sbjct: 230 SFVLLLCITLCTSSISPPAPQDAVHITAILGESVVFNCHVEFPGDHPVPYVLQWEKK 286

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312374066|gb|EFR21713.1| hypothetical protein AND_16509 [Anopheles darlingi]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/40 (82%), Positives = 35/40 (87%)

Query: 35 PDISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK 74
          P   +AVHITA+LGESVVFNC VDFPGD PVPYVLQWEKK
Sbjct: 43 PFTQDAVHITAILGESVVFNCHVDFPGDHPVPYVLQWEKK 82

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357618966|gb|EHJ71750.1| hypothetical protein KGM_15726 [Danaus plexippus]

 Score = 75.1 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/40 (80%), Positives = 35/40 (87%)

Query: 36 DISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI 75
          D  +AVHITA+LGESVVFNC VDFP D PVPYVLQWEKK+
Sbjct: 30 DHQDAVHITAILGESVVFNCQVDFPEDIPVPYVLQWEKKV 69

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158297293|ref|XP_317553.4| AGAP007928-PA [Anopheles gambiae str. PEST] gi|157015125|gb|EAA12846.4| AGAP007928-PA [Anopheles gambiae str. PEST]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/37 (83%), Positives = 35/37 (94%)

Query: 39  NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI 75
           +AVHITA+LGESVVFNC VDFPG+ PVPYVLQWEKK+
Sbjct: 145 DAVHITAILGESVVFNCHVDFPGEHPVPYVLQWEKKV 181

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157113626|ref|XP_001652029.1| turtle protein, isoform [Aedes aegypti] gi|108877675|gb|EAT41900.1| AAEL006522-PA, partial [Aedes aegypti]

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/37 (81%), Positives = 35/37 (94%)

Query: 39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI 75
          +A+HITA+LGESVVFNC V+FPGD PVPYVLQWEKK+
Sbjct: 3  DAIHITAILGESVVFNCHVEFPGDHPVPYVLQWEKKV 39

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340728223|ref|XP_003402427.1| PREDICTED: protein turtle-like [Bombus terrestris]

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/54 (64%), Positives = 44/54 (81%), Gaps = 4/54 (7%)

Query: 23  LIITLVHFKGVSPDI--SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK 74
           L++ +V F  V+P +   +AVHITA+LGESVVFNC V+FPG+ PVPYVLQWEKK
Sbjct: 139 LLLGIVLF--VTPGLCHQDAVHITAILGESVVFNCHVEFPGEHPVPYVLQWEKK 190

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861456|ref|XP_003706202.1| PREDICTED: LOW QUALITY PROTEIN: protein turtle-like [Megachile rotundata]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/37 (81%), Positives = 35/37 (94%)

Query: 39  NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI 75
           +AVHITA+LGESVVFNC V+FPG+ PVPYVLQWEKK+
Sbjct: 166 DAVHITAILGESVVFNCHVEFPGEHPVPYVLQWEKKV 202

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194758581|ref|XP_001961540.1| GF15018 [Drosophila ananassae] gi|190615237|gb|EDV30761.1| GF15018 [Drosophila ananassae]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 44/64 (68%), Gaps = 6/64 (9%)

Query: 18  SLQVLLIITLVHFKGVSPDIS------NAVHITALLGESVVFNCGVDFPGDTPVPYVLQW 71
           S+Q L ++  +    V+ D+       +AVHITA+LGE V+FNC V+FP D PVPYVLQW
Sbjct: 91  SVQALYLVATLFLALVATDVQAHNIPDDAVHITAILGEGVIFNCHVEFPNDHPVPYVLQW 150

Query: 72  EKKI 75
           +KK+
Sbjct: 151 DKKV 154

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322800563|gb|EFZ21549.1| hypothetical protein SINV_00466 [Solenopsis invicta]

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 31/41 (75%), Positives = 36/41 (87%)

Query: 39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKNN 79
          +AVHITA+LGESVVFNC V+FPG+ PVPYVLQWEKK+   N
Sbjct: 12 DAVHITAILGESVVFNCHVEFPGEHPVPYVLQWEKKVGDTN 52

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195401062|ref|XP_002059133.1| GJ16222 [Drosophila virilis] gi|194156007|gb|EDW71191.1| GJ16222 [Drosophila virilis]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/37 (75%), Positives = 33/37 (89%)

Query: 39  NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI 75
           +AVHITA+LGE VVFNC V+FP D PVPYVLQW+KK+
Sbjct: 141 DAVHITAILGEGVVFNCHVEFPNDHPVPYVLQWDKKV 177

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
FB|FBgn0010473	1531	tutl "turtle" [Drosophila mela	0.462	0.024	0.729	3.2e-10
FB|FBgn0028482	719	CG16857 [Drosophila melanogast	0.687	0.076	0.403	1.7e-05

FB|FBgn0010473 tutl "turtle" [Drosophila melanogaster (taxid:7227)]

 Score = 160 (61.4 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 27/37 (72%), Positives = 33/37 (89%)

Query:    39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI 75
             +AVHITA+LGE V+FNC V+FP D PVPYVLQW+KK+
Sbjct:   134 DAVHITAILGEGVIFNCHVEFPNDHPVPYVLQWDKKV 170

GO:0008344 "adult locomotory behavior" evidence=IMP

GO:0007629 "flight behavior" evidence=IMP

GO:0030537 "larval behavior" evidence=IMP

GO:0007422 "peripheral nervous system development" evidence=NAS

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008039 "synaptic target recognition" evidence=IMP

GO:0048814 "regulation of dendrite morphogenesis" evidence=IMP

GO:0070593 "dendrite self-avoidance" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0007414 "axonal defasciculation" evidence=IMP

GO:0016199 "axon midline choice point recognition" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

FB|FBgn0028482 CG16857 [Drosophila melanogaster (taxid:7227)]

 Score = 112 (44.5 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 23/57 (40%), Positives = 33/57 (57%)

Query:    19 LQVLLIITLVHFKGVSP--DISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEK 73
             L +L II L++    S   D     ++ A +G  VVFNC +DFP D P+PY++ W K
Sbjct:    17 LALLAIILLMNISCTSAARDHRRQTNLEAKVGSHVVFNCYIDFPFDAPIPYLVHWTK 73


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.140   0.439    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       80        80   0.00091  102 3  11 22  0.38    29
                                                     29  0.41    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  551 (59 KB)
  Total size of DFA:  114 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.53u 0.07s 8.60t   Elapsed:  00:00:07
  Total cpu time:  8.53u 0.07s 8.60t   Elapsed:  00:00:10
  Start:  Thu Aug 15 13:05:06 2013   End:  Thu Aug 15 13:05:16 2013

GO:0007155 "cell adhesion" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	80
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	97.71
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	97.69
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	97.59
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	97.49
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	97.44
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	97.4
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.35
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	97.31
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	97.27
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	97.23
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	97.23
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	97.19
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	97.14
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	97.08
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	97.05
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	97.02
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	96.97
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	96.95
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	96.93
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	96.92
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	96.88
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	96.88
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	96.88
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	96.88
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	96.85
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	96.76
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	96.71
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	96.65
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	96.62
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	96.57
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	96.54
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	96.52
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	96.48
smart00409	86	IG Immunoglobulin.	96.48
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	96.42
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	96.41
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	96.4
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	96.37
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	96.27
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	96.25
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	96.19
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	96.18
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	96.15
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	96.12
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	96.05
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	96.03
PF00047	64	ig: Immunoglobulin domain The Prosite family only	96.01
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	95.98
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	95.97
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	95.97
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	95.88
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	95.87
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	95.87
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	95.83
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	95.8
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	95.77
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	95.74
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	95.52
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	95.47
PHA02826	227	IL-1 receptor-like protein; Provisional	95.45
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	95.44
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	95.36
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	95.12
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	94.99
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	94.95
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	94.93
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	94.85
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	94.75
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	94.74
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	94.62
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	94.59
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	94.55
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	94.42
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	94.36
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	94.35
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	94.29
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	94.19
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	94.18
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	94.16
PHA02785	326	IL-beta-binding protein; Provisional	94.1
PHA03376	221	BARF1; Provisional	94.08
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	94.05
smart00408	63	IGc2 Immunoglobulin C-2 Type.	94.02
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	93.86
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	93.86
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	93.65
PHA02982	251	hypothetical protein; Provisional	93.55
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	93.5
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	93.5
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	93.39
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	93.27
PHA02826	227	IL-1 receptor-like protein; Provisional	93.23
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	93.18
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	93.12
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	92.68
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	92.47
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	92.39
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	92.38
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	92.17
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	92.12
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	92.05
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	91.42
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	91.41
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	91.16
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	91.1
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	90.95
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	90.95
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	90.93
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	90.84
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	90.65
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	90.65
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	90.63
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	90.59
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	90.46
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	90.35
PHA02785	326	IL-beta-binding protein; Provisional	90.31
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	90.09
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	90.08
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	89.89
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	89.88
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	89.85
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	89.84
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	89.42
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	89.39
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	89.06
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	88.82
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	88.78
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	88.42
smart00406	81	IGv Immunoglobulin V-Type.	88.38
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	88.36
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	88.15
PHA02987	189	Ig domain OX-2-like protein; Provisional	87.81
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	87.42
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	87.07
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	86.96
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	85.23
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	83.86
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	83.07
PRK00059	336	prsA peptidylprolyl isomerase; Provisional	82.54
PF05688	47	DUF824: Salmonella repeat of unknown function (DUF	82.19
KOG4221|consensus	1381		82.12
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	81.97
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	81.59
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	80.36

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=97.71  E-value=7.5e-05  Score=44.32  Aligned_cols=36  Identities=22%  Similarity=0.532  Sum_probs=30.5

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +.|..++...|+.|.|.|.+.   |.|.| .++|.|+|..
T Consensus         6 ~~p~~~~v~~G~~~~l~C~~~---g~P~p-~i~W~k~g~~   41 (100)
T cd07693           6 EHPSDLIVSKGDPATLNCKAE---GRPTP-TIQWLKNGQP   41 (100)
T ss_pred             ecCceeEEcCCCeEEEEeeCC---cCCCC-EEEEEECCEE
Confidence            567889999999999999886   56777 5899999865

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=97.69  E-value=5.3e-05  Score=48.08  Aligned_cols=38  Identities=26%  Similarity=0.239  Sum_probs=32.2

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      .+.|+.+++++|+.|.|.|.+.   |.|.|- ++|.|+|.+-
T Consensus         4 ~~~p~~~~v~~G~~v~l~C~~~---G~p~p~-v~W~kdg~~l   41 (98)
T cd05762           4 IQFPEDMKVRAGESVELFCKVT---GTQPIT-CTWMKFRKQI   41 (98)
T ss_pred             EECCcCEEEECCCEEEEEEEEc---ccCCCc-eEEEECCEEe
Confidence            3578889999999999999996   777776 8999998753

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=97.59  E-value=0.00015  Score=42.81  Aligned_cols=37  Identities=22%  Similarity=0.452  Sum_probs=29.0

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ++|..+++..|+.|.|.|.+.  .+.|.| -++|.|+|.+
T Consensus         1 ~~p~~~~~~~G~~v~l~C~~~--~g~p~p-~i~W~k~g~~   37 (86)
T cd05724           1 VEPSDTQVAVGEMAVLECSPP--RGHPEP-TVSWRKDGQP   37 (86)
T ss_pred             CCCccEEEeCCCCEEEEEECC--CCCCCC-EEEEEECCEE
Confidence            468899999999999999763  345544 5789999865

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=97.49  E-value=0.00015  Score=43.78  Aligned_cols=33  Identities=21%  Similarity=0.380  Sum_probs=27.6

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      |+.++++.|+.|.|.|.+.-+    .| -++|.|+|.+
T Consensus         1 ~~~~~~~~G~~v~l~C~~~~~----~~-~v~W~k~g~~   33 (79)
T cd04973           1 VESYSAHPGDLLQLRCRLRDD----VQ-SINWTKDGVQ   33 (79)
T ss_pred             CCcEEecCCCCEEEEEEecCC----Cc-eEEEeeCCcC
Confidence            678889999999999998754    23 4999999975

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=97.44  E-value=0.0002  Score=43.76  Aligned_cols=37  Identities=35%  Similarity=0.571  Sum_probs=30.9

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ++.+...++..|+.|.|.|.++   |.|.|- +.|.|+|..
T Consensus         7 ~~~~~~~~~~~G~~v~L~C~~~---g~P~p~-v~W~k~g~~   43 (95)
T cd05730           7 RQSEVNATANLGQSVTLACDAD---GFPEPT-MTWTKDGEP   43 (95)
T ss_pred             CCcccceEEeCCCCEEEEEecc---EeCCCE-EEEEECCEE
Confidence            4567788999999999999985   777776 799999864

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=97.40  E-value=0.00026  Score=44.21  Aligned_cols=38  Identities=11%  Similarity=0.194  Sum_probs=33.7

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      ++|..++++.|+.|.|.|..   .|.|.|.-+.|.|+|.+-
T Consensus         3 ~~P~~~~v~~G~~v~l~C~a---~G~P~P~~I~W~k~g~~l   40 (81)
T cd05749           3 VEPEDLSVTANTPFNLTCQA---VGPPEPVEILWWQGGSPL   40 (81)
T ss_pred             CCCCceEEcCCCCEEEEEEe---eeecCCeEEEEEECCEEC
Confidence            57888999999999999986   699999889999999764

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.35  E-value=0.00039  Score=45.09  Aligned_cols=38  Identities=18%  Similarity=0.277  Sum_probs=31.0

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCC--CCCceEEEeeecc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGD--TPVPYVLQWEKKI   75 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~--~PiPYVvqW~KdG   75 (80)
                      +.|+.+.|..|+.|+|+|.+++|.+  .+-...+.|.|+.
T Consensus         4 q~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~   43 (119)
T cd05712           4 WMPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGH   43 (119)
T ss_pred             cCCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCC
Confidence            5689999999999999999999953  2234668999984

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=97.31  E-value=0.00028  Score=42.94  Aligned_cols=37  Identities=22%  Similarity=0.384  Sum_probs=31.6

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      +.|...++..|+.|.|.|.+.   |.|.| .+.|.|+|.+.
T Consensus         4 ~~p~~~~~~~G~~~~l~C~~~---g~p~p-~v~W~k~g~~~   40 (85)
T cd05728           4 KVISDTEADIGSSLRWECKAS---GNPRP-AYRWLKNGQPL   40 (85)
T ss_pred             ccCCccEEcCCCcEEEEEEee---EeCCC-EEEEEECCEEC
Confidence            468889999999999999876   77777 69999998753

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=97.27  E-value=0.0004  Score=42.65  Aligned_cols=36  Identities=36%  Similarity=0.689  Sum_probs=28.9

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .+|+..+...|+.|.|.|.+.   +.|.| .++|.|+|..
T Consensus         4 ~~P~~~~~~~g~~v~l~C~v~---g~P~p-~i~W~k~g~~   39 (95)
T cd05722           4 SEPSDIVAVRGGPVVLNCSAE---GEPPP-KIEWKKDGVL   39 (95)
T ss_pred             ECCCCeEEcCCCCEEEeeecc---cCCCC-EEEEEECCeE
Confidence            467888889999999999986   45544 4699999874

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=97.23  E-value=0.00049  Score=42.17  Aligned_cols=37  Identities=30%  Similarity=0.586  Sum_probs=31.3

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .++|..++++.|+.+.|.|.+.   +.|.|- +.|.|+|..
T Consensus         7 ~~~p~~~~~~~G~~~~L~C~~~---g~P~p~-v~W~k~g~~   43 (92)
T cd05747           7 LTKPRSLTVSEGESARFSCDVD---GEPAPT-VTWMREGQI   43 (92)
T ss_pred             cccCccEEEeCCCcEEEEEEEe---ecCCCE-EEEEECCEE
Confidence            4578889999999999999775   777775 999999865

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=97.23  E-value=0.00055  Score=44.00  Aligned_cols=35  Identities=14%  Similarity=0.201  Sum_probs=28.6

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .+|+..+.+.|+.|+|.|..+-    |.|. +.|.|+|.+
T Consensus         1 ~~P~~~~v~~G~~v~L~C~~~~----~~~~-i~W~~ng~~   35 (87)
T cd05873           1 LDPRQRTFKLGNNAELKCSPKS----NLAR-VVWKFDGKV   35 (87)
T ss_pred             CCcceEEEECCCCEEEEEECCC----CCCe-EEEEECCEE
Confidence            3789999999999999999643    3343 799999875

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=97.19  E-value=0.00056  Score=42.54  Aligned_cols=36  Identities=22%  Similarity=0.352  Sum_probs=30.4

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .-|..+++..|+.|.|.|.+.   +.|.|+ +.|.|+|.+
T Consensus         6 ~~p~~v~v~eG~~v~L~C~v~---g~P~p~-i~W~k~~~~   41 (92)
T cd05891           6 GLPDVVTIMEGKTLNLTCTVF---GNPDPE-VIWFKNDQD   41 (92)
T ss_pred             cCCCcEEEcCCCEEEEEEEEE---EeCCCe-EEEEECCEE
Confidence            457899999999999999985   567777 799999864

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=97.14  E-value=0.00064  Score=41.78  Aligned_cols=35  Identities=23%  Similarity=0.376  Sum_probs=29.3

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      =|..++++.|+.+.|.|.+.   |.|.|- +.|.|+|.+
T Consensus         7 lp~~v~v~~G~~v~L~C~v~---G~P~p~-v~W~k~g~~   41 (92)
T cd05737           7 LPDVVTIMEGKTLNLTCTVF---GDPDPE-VSWLKNDQA   41 (92)
T ss_pred             CCceEEEeCCCcEEEEEEEE---ecCCCe-EEEEECCEE
Confidence            46788999999999999875   777775 789999865

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=97.08  E-value=0.00073  Score=41.24  Aligned_cols=36  Identities=14%  Similarity=0.385  Sum_probs=30.0

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +.|+..++..|+.|.|.|.+.   |.|.| -+.|.|+|..
T Consensus         5 ~~p~~~~v~~G~~v~l~C~~~---G~P~p-~v~W~~~g~~   40 (90)
T cd04972           5 DGPNATVVYEGGTATIRCTAE---GSPLP-KVEWIIAGLI   40 (90)
T ss_pred             cCCcCEEEcCCCcEEEEEEEE---EcCCC-eEEEEECCEE
Confidence            346677799999999999998   77776 6899999864

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=97.05  E-value=0.00073  Score=43.73  Aligned_cols=35  Identities=26%  Similarity=0.412  Sum_probs=27.8

Q ss_pred             cceEEeecCCeEEEeeecCC-CCCCCCceEEEeeeccccc
Q psy531           40 AVHITALLGESVVFNCGVDF-PGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdf-P~~~PiPYVvqW~KdG~~~   78 (80)
                      =..+++.+|++|.|.|.++= |   |+| .+.|.|||.+-
T Consensus        10 ~~~~~v~~G~~v~L~c~v~g~~---P~p-~v~W~Kdg~~i   45 (101)
T cd04975          10 NTTIFVNLGENLNLVVEVEAYP---PPP-HINWTYDNRTL   45 (101)
T ss_pred             CceEEEECCCCEEEEEEEEecC---CCC-ccEEEeCCeeC
Confidence            35788999999999999982 3   444 58999999753

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=97.02  E-value=0.0014  Score=39.76  Aligned_cols=35  Identities=17%  Similarity=0.274  Sum_probs=27.9

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ++|..+++..|+.|.|.|.+.-    |.| -++|.|+|..
T Consensus         1 ~~~~~~~v~~g~~v~L~C~~~~----p~~-~i~W~k~~~~   35 (89)
T cd04979           1 AEEKVVTVVEGNSVFLECSPKS----NLA-SVVWLFQGGP   35 (89)
T ss_pred             CcceEEEEECCCcEEEEEeCCC----CCc-eEEEEECCcc
Confidence            3678889999999999999764    334 3899999854

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=96.97  E-value=0.0014  Score=40.40  Aligned_cols=36  Identities=28%  Similarity=0.504  Sum_probs=30.4

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .+|...++..|+.|.|.|.++   |.|.|. +.|.|+|.+
T Consensus         6 ~~~~~~~~~~G~~v~l~C~~~---G~P~P~-v~W~k~~~~   41 (88)
T cd05851           6 VKFKDTYALKGQNVTLECFAL---GNPVPV-IRWRKILEP   41 (88)
T ss_pred             EccccEEEeCCCcEEEEEEec---ccCCCE-EEEEECCcC
Confidence            456778899999999999976   888885 999998764

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.95  E-value=0.0011  Score=39.17  Aligned_cols=36  Identities=31%  Similarity=0.478  Sum_probs=29.2

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +.|..++++.|+.+.|.|.+.-.   |.| .++|.|+|.+
T Consensus         5 ~~~~~~~v~~G~~~~l~c~~~~~---p~~-~v~W~~~~~~   40 (90)
T PF07679_consen    5 KKPKDVTVKEGESVTLECEVSGN---PPP-TVTWYKNGRP   40 (90)
T ss_dssp             EESSEEEEETTSEEEEEEEEEES---SSS-EEEEEETTEE
T ss_pred             EecCCEEEeCCCEEEEEEEEEeC---CCC-cccccccccc
Confidence            35788999999999999999733   444 7899999865

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=96.93  E-value=0.0017  Score=41.04  Aligned_cols=37  Identities=19%  Similarity=0.216  Sum_probs=30.0

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|.|..+++..|+.|-|+|.+.-+  .-.++.+.|.|+.
T Consensus         2 ~Q~p~~~~~~~G~~v~l~C~~~~~--~~~~~~v~Wyrq~   38 (116)
T cd04982           2 EQPQLSITREESKSVTISCKVSGI--DFSTTYIHWYRQK   38 (116)
T ss_pred             CCcCCeEEeCCCCCEEEEEEEeCC--CccccEEEEEEEC
Confidence            578999999999999999998664  1235679999973

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=96.92  E-value=0.0015  Score=40.24  Aligned_cols=37  Identities=22%  Similarity=0.236  Sum_probs=29.7

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..|+..+...|+.|.|.|..+-.   |.|--++|.|+|..
T Consensus         5 ~~P~~~~v~~G~~V~L~C~~~~~---p~~~~~~W~kng~~   41 (78)
T cd05752           5 LDPPWTTIFQGEKVTLTCNGFNS---PEQNSTQWYHNGKL   41 (78)
T ss_pred             eCCCCeEeeCCCCEEEEEeCCCC---CCCccEEEEECCEE
Confidence            35888889999999999998753   44444799999975

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=96.88  E-value=0.0013  Score=39.67  Aligned_cols=36  Identities=28%  Similarity=0.422  Sum_probs=29.1

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..|+..++..|+.|.|.|.++   |.|.|- ++|.|++..
T Consensus         6 ~~p~~~~~~~g~~v~l~C~~~---g~P~p~-v~W~k~~~~   41 (88)
T cd04968           6 VFPKDTYALKGQNVTLECFAL---GNPVPQ-IKWRKVDGS   41 (88)
T ss_pred             ECCCceEEeCCCcEEEEEEee---EeCCCE-EEEEECCCc
Confidence            457888899999999999764   667664 899998753

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=96.88  E-value=0.00097  Score=42.92  Aligned_cols=32  Identities=28%  Similarity=0.300  Sum_probs=28.9

Q ss_pred             eEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           42 HITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        42 ~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..++.+|+.+.|.|.++   +.|.| .++|.|+|.+
T Consensus        12 ~~~~~~~~~~~l~~~v~---g~P~P-~v~W~kdg~~   43 (101)
T cd05859          12 LEFANLHEVKEFVVEVE---AYPPP-QIRWLKDNRT   43 (101)
T ss_pred             eEEEecCCcEEEEEEEE---EeCCC-ceEEEECCEE
Confidence            67899999999999997   77888 7999999986

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=96.88  E-value=0.0016  Score=40.16  Aligned_cols=35  Identities=23%  Similarity=0.460  Sum_probs=28.5

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .+.|..+++..|+.|.|+|.+...    .+..+.|.|+.
T Consensus         2 ~q~~~~v~~~~G~~v~L~C~~~~~----~~~~v~W~k~~   36 (109)
T cd04983           2 TQSPQSLSVQEGENVTLNCNYSTS----TFYYLFWYRQY   36 (109)
T ss_pred             eecCCceEEcCCCCEEEEEEECCC----CccEEEEEEEC
Confidence            467889999999999999998854    23467899975

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=96.88  E-value=0.0016  Score=40.26  Aligned_cols=33  Identities=15%  Similarity=0.426  Sum_probs=27.4

Q ss_pred             eEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           42 HITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        42 ~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      -+++++|+.|.|.|.+.   |.|.| .+.|.|+|.+-
T Consensus         4 ~~~v~~G~~v~l~c~~~---G~P~P-~v~W~k~~~~i   36 (86)
T cd05894           4 TIVVVAGNKLRLDVPIS---GEPAP-TVTWSRGDKAF   36 (86)
T ss_pred             EEEEEcCCEEEEEeeEe---ecCCC-eEEEEECCEEC
Confidence            36789999999999885   77777 68999998754

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=96.85  E-value=0.0014  Score=37.91  Aligned_cols=32  Identities=28%  Similarity=0.494  Sum_probs=25.2

Q ss_pred             eEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           42 HITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        42 ~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ++++.+|+.|.|.|.+.   +.|.|. +.|.|+|..
T Consensus         3 ~~~~~~G~~v~L~C~~~---g~p~p~-i~W~k~~~~   34 (82)
T cd05856           3 VIARPVGSSVRLKCVAS---GNPRPD-ITWLKDNKP   34 (82)
T ss_pred             ceeccCCCeEEEEEEee---EeCCCc-EEEEECCcC
Confidence            46688999999999875   455554 899999865

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=96.76  E-value=0.0021  Score=39.89  Aligned_cols=32  Identities=16%  Similarity=0.536  Sum_probs=26.9

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      +|...++..|+.|.|.|.+.   |.|.|. ++|.|+
T Consensus         7 ~~~~~~~~~G~~v~l~C~~~---G~P~p~-i~W~k~   38 (98)
T cd05870           7 QLKNETTVENGAATLSCKAE---GEPIPE-ITWKRA   38 (98)
T ss_pred             eeccEEEcCCCcEEEEEecc---cCCCCe-EEEEEC
Confidence            46678899999999999875   777775 999995

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=96.71  E-value=0.0029  Score=39.24  Aligned_cols=35  Identities=26%  Similarity=0.365  Sum_probs=29.3

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      |...++..|+.|.|.|.+.   +.|.|-.+.|.|++.+
T Consensus         8 ~~~~~~~~G~~v~L~C~~~---g~P~P~~v~W~~~~~~   42 (98)
T cd05758           8 EATQYAILGDKGRVECFIF---STPPPDRIVWTWKENE   42 (98)
T ss_pred             CCcEEEeCCCcEEEEEEEc---ccCCCCEeEEEECCEE
Confidence            4455689999999999998   8888877999998853

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=96.65  E-value=0.0027  Score=40.32  Aligned_cols=36  Identities=22%  Similarity=0.496  Sum_probs=29.2

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|.|..+++..|++|.|+|.+....   ..+-+.|.|..
T Consensus         3 ~q~~~~v~~~~G~~v~L~C~~~~~~---~~~~v~Wyrq~   38 (116)
T cd07706           3 TQAQPDVSVQVGEEVTLNCRYETSW---TNYYIFWYKQL   38 (116)
T ss_pred             EEeCCceEEcCCCCEEEEEEEeCCC---CceEEEEEEEC
Confidence            4778899999999999999876532   34779999974

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=96.62  E-value=0.0027  Score=40.68  Aligned_cols=32  Identities=28%  Similarity=0.466  Sum_probs=25.3

Q ss_pred             ceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           41 VHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        41 ~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      ..+++..|+.|.|+|.+..   .|. +.++|.|++.
T Consensus         5 ~~~tv~~G~tv~L~C~v~g---~~~-~~v~W~k~~~   36 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKE---HDN-SSLQWSNTAQ   36 (95)
T ss_pred             ccEEEecCCcEEEEEEEeC---CCC-CeEEEeccCc
Confidence            4578999999999998864   443 4589999875

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=96.57  E-value=0.0026  Score=38.60  Aligned_cols=31  Identities=23%  Similarity=0.404  Sum_probs=25.2

Q ss_pred             EEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        43 ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      +++..|+.|.|.|.++.+   ..++.+.|.|...
T Consensus         1 ~~v~~G~~v~L~C~~~~~---~~~~~v~W~k~~~   31 (105)
T cd00099           1 LSVSEGESVTLSCTYSGS---FSSYYIFWYRQKP   31 (105)
T ss_pred             CeecCCCCEEEEEEEeCC---cCcceEEEEEECC
Confidence            468899999999999976   3356799999754

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=96.54  E-value=0.0053  Score=36.83  Aligned_cols=38  Identities=18%  Similarity=0.298  Sum_probs=29.3

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      -+.|..++...|+.|.|.|...-.  . ++.-+.|.|++.+
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~--~-~~~~i~W~~~~~~   42 (85)
T cd05754           5 VEEPRSQEVRPGADVSFICRAKSK--S-PAYTLVWTRVGGG   42 (85)
T ss_pred             ecCCCceEEcCCCCEEEEEEcCCC--C-CCcEEEEEECCCc
Confidence            357888899999999999987532  1 3455899998853

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=96.52  E-value=0.0051  Score=35.49  Aligned_cols=32  Identities=22%  Similarity=0.408  Sum_probs=24.9

Q ss_pred             eEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           42 HITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        42 ~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .+.+..|+.+.|.|.+.   +.|.|+ ++|.|+|..
T Consensus         3 ~~~~~~G~~~~l~C~~~---~~p~~~-v~W~k~~~~   34 (85)
T cd05729           3 LHAVPAGSTVRLKCPAS---GNPRPT-ITWLKDGKP   34 (85)
T ss_pred             eeEecCCCcEEEEEEcC---CCCCCe-EEEEECCEE
Confidence            45688999999999885   345555 799999764

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>smart00410 IG_like Immunoglobulin like

Probab=96.48  E-value=0.0059  Score=33.37  Aligned_cols=31  Identities=32%  Similarity=0.500  Sum_probs=25.6

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      |..+++.+|+.+.|.|.+...    ....+.|.++
T Consensus         1 ~~~~~~~~g~~~~l~C~~~~~----~~~~~~W~~~   31 (86)
T smart00410        1 PPSVTVKEGESVTLSCEVSGS----PPPEVTWYKQ   31 (86)
T ss_pred             CCcEEEeCCCeEEEEEEEccC----CCCeEEEEEC
Confidence            456778999999999999865    4567999987

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=96.48  E-value=0.0059  Score=33.37  Aligned_cols=31  Identities=32%  Similarity=0.500  Sum_probs=25.6

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      |..+++.+|+.+.|.|.+...    ....+.|.++
T Consensus         1 ~~~~~~~~g~~~~l~C~~~~~----~~~~~~W~~~   31 (86)
T smart00409        1 PPSVTVKEGESVTLSCEVSGS----PPPEVTWYKQ   31 (86)
T ss_pred             CCcEEEeCCCeEEEEEEEccC----CCCeEEEEEC
Confidence            456778999999999999865    4567999987

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=96.42  E-value=0.0036  Score=36.93  Aligned_cols=28  Identities=29%  Similarity=0.523  Sum_probs=23.4

Q ss_pred             cCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           47 LGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        47 vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      .|+.|.|.|.+   .|.|.|. +.|.|+|.+.
T Consensus         1 eG~~v~l~C~~---~g~P~p~-i~W~k~g~~~   28 (74)
T cd05745           1 EGQTVDFLCEA---QGYPQPV-IAWTKGGSQL   28 (74)
T ss_pred             CCCeEEEEeEC---CEecCCE-EEEEECCEEC
Confidence            38999999997   4888887 9999998653

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=96.41  E-value=0.0052  Score=38.48  Aligned_cols=36  Identities=17%  Similarity=0.326  Sum_probs=28.1

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|.|..++++.|++|.|+|.++-..+   -+-+.|.|+.
T Consensus         4 ~Q~p~~~~v~~G~~v~L~C~~~~~~~---~~~~~Wyrq~   39 (106)
T cd04980           4 TQSPATLSVSPGESATISCKASQSVS---SNYLAWYQQK   39 (106)
T ss_pred             EECCCcEEECCCCCEEEEEEECCCCC---CCcEEEEEEC
Confidence            57899999999999999999853321   2458998874

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=96.40  E-value=0.0044  Score=37.44  Aligned_cols=34  Identities=21%  Similarity=0.491  Sum_probs=27.3

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      .+...++..|+.|.|.|.++   +.|.|. +.|.|++.
T Consensus         7 ~~~~~~~~~g~~v~l~C~~~---g~p~p~-v~W~~~~~   40 (96)
T cd05732           7 YLENQTAVELEQITLTCEAE---GDPIPE-ITWRRATR   40 (96)
T ss_pred             ecCceeEecCCcEEEEEEEe---EcCCCc-EEEEECCc
Confidence            35567899999999999886   566664 88999874

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=96.37  E-value=0.0037  Score=37.00  Aligned_cols=26  Identities=27%  Similarity=0.693  Sum_probs=22.1

Q ss_pred             CCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           48 GESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      |+.|.|.|.+.   |.|.| -++|.|+|.+
T Consensus         1 G~~v~l~C~~~---G~P~p-~i~W~k~g~~   26 (76)
T cd05867           1 GETARLDCQVE---GIPTP-NITWSINGAP   26 (76)
T ss_pred             CCeEEEEEEee---EeCCC-eEEEEECCEE
Confidence            89999999764   77888 7999999864

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=96.27  E-value=0.011  Score=37.94  Aligned_cols=37  Identities=14%  Similarity=0.240  Sum_probs=27.5

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      -|..+++..|+.|.|+|.+..+....--+.++|.|+.
T Consensus         4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~   40 (116)
T cd05715           4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQP   40 (116)
T ss_pred             cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEec
Confidence            4788899999999999998765322122569998754

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=96.25  E-value=0.009  Score=35.33  Aligned_cols=30  Identities=23%  Similarity=0.548  Sum_probs=23.9

Q ss_pred             EeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           44 TALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        44 tA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ....|+.+.|.|.+.   |.|.| .++|.|+|.+
T Consensus         5 ~v~~G~~~~L~C~~~---g~P~p-~i~W~k~g~~   34 (85)
T cd05857           5 AVPAANTVKFRCPAA---GNPTP-TMRWLKNGKE   34 (85)
T ss_pred             EcCCCCEEEEEEEcC---CCCCC-EEEEEECCEE
Confidence            367899999999885   44555 6899999865

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=96.19  E-value=0.0076  Score=37.68  Aligned_cols=35  Identities=20%  Similarity=0.425  Sum_probs=26.7

Q ss_pred             CcceEEe---ecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITA---LLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA---~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +|..++.   ..|+.|.|.|.+.   |.|.| .++|.|+|.+
T Consensus         7 ~p~~~~~~~~~~g~~v~l~C~~~---G~P~P-~i~W~k~g~~   44 (94)
T cd05848           7 EPDDAIFPTDSDEKKVILNCEAR---GNPVP-TYRWLRNGTE   44 (94)
T ss_pred             CCCcEEccCCCCCCEEEEEEEee---ecCCC-EEEEEECCeE
Confidence            4555433   3589999999984   88888 7999999865

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=96.18  E-value=0.012  Score=38.34  Aligned_cols=36  Identities=17%  Similarity=0.370  Sum_probs=26.3

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      -|..++|..|++|.|+|.+......+..+.++|.++
T Consensus         4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~   39 (115)
T cd05880           4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFR   39 (115)
T ss_pred             cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEE
Confidence            467899999999999999865422222356999754

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=96.15  E-value=0.0072  Score=38.56  Aligned_cols=37  Identities=19%  Similarity=0.154  Sum_probs=29.8

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeee-ccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEK-KIV   76 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~K-dG~   76 (80)
                      ...|...+..+|+.|.|.|.+   .|.|.|--++|.| +|.
T Consensus         4 ~~~p~~~~v~~G~~v~l~C~v---~G~P~~p~i~W~~~~g~   41 (96)
T cd05865           4 DIVPSQGEISVGESKFFLCQV---AGEAKDKDISWFSPNGE   41 (96)
T ss_pred             EEeCCccEECCCCeEEEEEEE---eCCCCCCEEEEECCCCc
Confidence            346777789999999999988   4777666899998 664

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=96.12  E-value=0.0083  Score=37.38  Aligned_cols=36  Identities=14%  Similarity=0.326  Sum_probs=27.0

Q ss_pred             CcceE---EeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           39 NAVHI---TALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        39 ~P~~l---tA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      +|..+   ++..|+.|.|.|.+.   +.|.| .++|.|+|.+.
T Consensus         7 ~P~~~~~~~~~~g~~v~l~C~a~---g~P~p-~i~W~~~g~~l   45 (94)
T cd05850           7 QPSSLLFPEGSPEEKVTLGCRAR---ASPPA-TYRWKMNGTEI   45 (94)
T ss_pred             CCCCEEecCCCCCCeEEEEeEce---eCCCC-EEEEEECCEEC
Confidence            44444   456678999999984   77777 68999998753

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=96.05  E-value=0.0091  Score=34.77  Aligned_cols=25  Identities=40%  Similarity=0.946  Sum_probs=20.4

Q ss_pred             CCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           48 GESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      |+.|.|.|.+.   +.|.|. +.|.|++.
T Consensus         1 G~~v~l~C~~~---g~P~p~-v~W~k~~~   25 (81)
T cd05765           1 GETASFHCDVT---GRPPPE-ITWEKQVH   25 (81)
T ss_pred             CCcEEEEeecc---ccCCCc-EEEEecCC
Confidence            89999999774   777776 89999853

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.03  E-value=0.013  Score=34.89  Aligned_cols=35  Identities=20%  Similarity=0.344  Sum_probs=28.6

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      .|..+++..|++|.|.|.+. +  ....+.+.|.|...
T Consensus         7 ~~~~v~~~~G~~v~L~C~~~-~--~~~~~~v~W~~~~~   41 (114)
T PF07686_consen    7 PPSPVTVQEGESVTLPCSYS-S--SSNQSSVYWYRQSP   41 (114)
T ss_dssp             EESEEEEETTSEEEEEEEEE-S--SSSGSEEEEEEEET
T ss_pred             eCCeEEEecCCCEEEEEEEe-C--CCCcceEEEEEECc
Confidence            58889999999999999999 3  33456799999644

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=96.01  E-value=0.007  Score=33.91  Aligned_cols=28  Identities=32%  Similarity=0.629  Sum_probs=23.4

Q ss_pred             CCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           48 GESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      |++|.|.|.+   .+.+.+.-+.|.|.+...
T Consensus         1 G~~v~L~C~~---~~~~~~~~~~W~~~~~~~   28 (64)
T PF00047_consen    1 GSSVTLTCSV---SSGPPPTTVTWSKNGQSL   28 (64)
T ss_dssp             TSEEEEEEEE---EESSSTSEEEEEETTTTT
T ss_pred             CCeEEEEeec---CCCCCCcEEEEEECCccc
Confidence            8999999999   566677889999998643

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=95.98  E-value=0.0084  Score=35.75  Aligned_cols=26  Identities=35%  Similarity=0.703  Sum_probs=22.5

Q ss_pred             CCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           48 GESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      |+.|.|.|...   |.|.|- ++|.|+|.+
T Consensus         1 G~~v~L~C~a~---G~P~P~-v~W~k~g~~   26 (69)
T cd05739           1 GGSVNLTCVAV---GAPMPY-VKWMKGGEE   26 (69)
T ss_pred             CCeEEEEEEee---ecCCCE-EEEEECCEE
Confidence            78999999875   889995 889999865

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=95.97  E-value=0.0095  Score=34.42  Aligned_cols=26  Identities=27%  Similarity=0.639  Sum_probs=22.0

Q ss_pred             CCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           48 GESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      |+.|.|.|.+.   |.|.|- +.|.|+|.+
T Consensus         1 G~~~~l~C~~~---g~P~p~-i~W~~~g~~   26 (76)
T cd04978           1 GETGRLDCEAE---GIPQPT-ITWRLNGVP   26 (76)
T ss_pred             CCeEEEEEEce---eeCCCE-EEEEECCEE
Confidence            89999999874   788875 899999864

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=95.97  E-value=0.011  Score=37.40  Aligned_cols=30  Identities=27%  Similarity=0.555  Sum_probs=24.0

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeee
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEK   73 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~K   73 (80)
                      ++.+++..|+.|.|.|.+.   +.|.|+ +.|.|
T Consensus         4 ~~~v~v~eG~~v~L~C~~~---~~p~~~-v~W~~   33 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVD---QNDNTS-LQWSN   33 (95)
T ss_pred             cceEEEecCCcEEEEEEEe---cCCceE-EEEeC
Confidence            5678999999999999885   445555 68975

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=95.88  E-value=0.013  Score=35.88  Aligned_cols=30  Identities=23%  Similarity=0.497  Sum_probs=22.6

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeee
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEK   73 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~K   73 (80)
                      +..+++..|+.|.|+|.+.-   .+-| .++|.|
T Consensus         4 ~~~~~v~~G~~v~L~C~~~~---~~~~-~v~W~~   33 (95)
T cd05717           4 TQDVTVVEGGTATLKCRVKN---NDNS-SLQWSN   33 (95)
T ss_pred             CCcEEEcCCCCEEEEEEECC---CCCc-eEEEeC
Confidence            35678999999999999853   2333 499975

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=95.87  E-value=0.01  Score=35.85  Aligned_cols=26  Identities=27%  Similarity=0.632  Sum_probs=21.6

Q ss_pred             CCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           48 GESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      |+.|.|.|.+.   +.|.| .++|.|++..
T Consensus         1 G~~~~l~C~~~---g~P~p-~v~W~k~~~~   26 (73)
T cd05852           1 GGRVIIECKPK---AAPKP-KFSWSKGTEL   26 (73)
T ss_pred             CCeEEEEEecc---eeCCC-EEEEEeCCEe
Confidence            88999999875   67777 7899999864

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=95.87  E-value=0.0094  Score=37.01  Aligned_cols=34  Identities=24%  Similarity=0.272  Sum_probs=26.9

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeee-ccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEK-KIV   76 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~K-dG~   76 (80)
                      ..|...++.+|+.|.|.|.+.   |.| | -++|.| +|.
T Consensus         5 v~p~~~~v~~G~~~~l~C~~~---G~p-~-~i~W~~~~~~   39 (92)
T cd04977           5 IVPSQGEISVGESKFFLCQVI---GEP-K-DISWFSPNGE   39 (92)
T ss_pred             EecCcEEECCCCeEEEEEEeE---eeC-C-eEEEECCCCC
Confidence            467778999999999999985   444 4 799998 443

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=95.83  E-value=0.013  Score=36.77  Aligned_cols=36  Identities=8%  Similarity=0.152  Sum_probs=29.1

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .+.|..+++..|++|.|.|..+   |. .| .+.|.|+|..
T Consensus         7 ~~~~~~~~v~~g~~v~l~C~a~---g~-~p-~i~W~kng~~   42 (91)
T cd05740           7 NNSVGNQPPEDNQPVTLTCEAE---GQ-AT-YIWWVNNGSL   42 (91)
T ss_pred             ccccCccccccCCcEEEEEEeC---CC-CC-EEEEEECCEE
Confidence            5677888999999999999987   44 44 4799999864

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=95.80  E-value=0.013  Score=36.95  Aligned_cols=35  Identities=14%  Similarity=0.184  Sum_probs=28.2

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      .|.|..++++.|+.|-|+|.+.-    + .+-|.|.|+..
T Consensus         2 ~Q~p~~~~v~~G~~v~l~C~~~~----~-~~~v~Wykq~~   36 (110)
T cd05899           2 TQSPRYLIKGRGQSVTLRCSQTS----G-HDNMYWYRQDP   36 (110)
T ss_pred             EECCCceEEcCCCcEEEEEEECC----C-CCEEEEEEECC
Confidence            47899999999999999998754    2 24588999853

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=95.77  E-value=0.0091  Score=38.00  Aligned_cols=32  Identities=22%  Similarity=0.453  Sum_probs=26.2

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      .+|..+++..|+.|.|.|.+   .|.|.  .++|.|+
T Consensus         5 ~~~~~~~v~~G~~v~l~C~~---~G~P~--~v~W~k~   36 (92)
T cd05866           5 ISLSKVELSVGESKFFTCTA---IGEPE--SIDWYNP   36 (92)
T ss_pred             EEecceEEcCCCeEEEEEEE---EEeCC--eEEEEeC
Confidence            46778889999999999997   46554  6899985

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=95.74  E-value=0.012  Score=34.38  Aligned_cols=26  Identities=27%  Similarity=0.673  Sum_probs=21.5

Q ss_pred             CCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           48 GESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      |+.|.|.|.+.   +.|.| .+.|.|++..
T Consensus         1 G~~v~L~C~~~---g~P~p-~v~W~k~~~~   26 (73)
T cd04969           1 GGDVIIECKPK---AAPKP-TISWSKGTEL   26 (73)
T ss_pred             CCeEEEEEeee---EcCCC-EEEEEECCEE
Confidence            88999999974   66766 6899999864

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=95.52  E-value=0.015  Score=37.63  Aligned_cols=28  Identities=29%  Similarity=0.567  Sum_probs=22.5

Q ss_pred             cCCeEEEeeecCCCCCCC------CceEEEeeec
Q psy531           47 LGESVVFNCGVDFPGDTP------VPYVLQWEKK   74 (80)
Q Consensus        47 vGe~VVlnCdvdfP~~~P------iPYVvqW~Kd   74 (80)
                      .|++|.|+|.+..+...+      -...++|.|+
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~   34 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKL   34 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEe
Confidence            599999999998874332      2588999997

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=95.47  E-value=0.015  Score=38.66  Aligned_cols=28  Identities=29%  Similarity=0.602  Sum_probs=23.0

Q ss_pred             cCCeEEEeeecCCC-C--CCCCceEEEeeec
Q psy531           47 LGESVVFNCGVDFP-G--DTPVPYVLQWEKK   74 (80)
Q Consensus        47 vGe~VVlnCdvdfP-~--~~PiPYVvqW~Kd   74 (80)
                      .|++|.|+|.+.++ .  +.+-++.++|.|.
T Consensus         1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~   31 (110)
T cd05902           1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKL   31 (110)
T ss_pred             CCCcEEEeeEEEcCccccCCCCCCEEEEEEe
Confidence            48999999998885 3  3456799999997

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=95.45  E-value=0.031  Score=41.13  Aligned_cols=38  Identities=18%  Similarity=0.365  Sum_probs=27.2

Q ss_pred             CcceEEeecCCeEEEeeecCC-CCC---C---CCceEEEeeeccc
Q psy531           39 NAVHITALLGESVVFNCGVDF-PGD---T---PVPYVLQWEKKIV   76 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdf-P~~---~---PiPYVvqW~KdG~   76 (80)
                      +..-+.+..||.|+|.|.++. |..   .   .--|-|+|.|.+.
T Consensus        28 ~~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s   72 (227)
T PHA02826         28 DLTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDS   72 (227)
T ss_pred             CcceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCe
Confidence            345577899999999999874 411   1   2347799999864

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=95.44  E-value=0.018  Score=35.38  Aligned_cols=24  Identities=38%  Similarity=0.785  Sum_probs=20.4

Q ss_pred             CCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           48 GESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |+.|.|.|.+.   +.|.|- ++|.|++
T Consensus         1 G~~v~l~C~v~---g~P~P~-i~W~k~~   24 (90)
T cd04974           1 GSDVEFHCKVY---SDAQPH-IQWLKHV   24 (90)
T ss_pred             CCcEEEEEEEe---CCCCCe-EEEEEec
Confidence            78999999986   677777 9999974

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=95.36  E-value=0.031  Score=34.28  Aligned_cols=31  Identities=29%  Similarity=0.341  Sum_probs=23.7

Q ss_pred             EEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        43 ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      ++|..|++|.|+|.++...+.   +.+.|.|...
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~---~~~~W~r~~~   32 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRS---YEKYWCKWGS   32 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCC---cEeEeECCCC
Confidence            579999999999998754222   4568998753

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=95.12  E-value=0.025  Score=31.82  Aligned_cols=31  Identities=29%  Similarity=0.463  Sum_probs=24.5

Q ss_pred             EEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        43 ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .+...|+.+.|.|.++   +.|. .-++|.|++..
T Consensus         9 ~~v~~g~~~~l~C~~~---~~p~-~~~~w~~~~~~   39 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVS---GNPP-PQVQWYKNGSP   39 (80)
T ss_dssp             SEEETTSEEEEEEEEE---SSSS-SEEEEEETTEE
T ss_pred             eEEeCCCcEEEEEEEE---cccc-eeeeeeeeeee
Confidence            4478899999999988   4444 56999998754

...

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=94.99  E-value=0.038  Score=33.72  Aligned_cols=24  Identities=38%  Similarity=0.754  Sum_probs=20.3

Q ss_pred             CCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           48 GESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |+.|.|.|.+.   +.|.| .++|.|++
T Consensus         1 G~~v~L~C~~~---g~P~P-~i~W~k~~   24 (90)
T cd05858           1 GSTVEFVCKVY---SDAQP-HIQWLKHV   24 (90)
T ss_pred             CCeEEEEEEEe---cCCCC-EEEEEEec
Confidence            89999999984   77888 59999964

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=94.95  E-value=0.033  Score=33.92  Aligned_cols=29  Identities=21%  Similarity=0.394  Sum_probs=22.9

Q ss_pred             eecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           45 ALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        45 A~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +..|+.|.|.|.+   .+.|.| .+.|.|+|.+
T Consensus        16 ~~~~~~~~l~C~~---~g~p~p-~i~W~k~~~~   44 (91)
T cd04967          16 ESDEGKVSLNCRA---RGSPPP-TYRWLMNGTE   44 (91)
T ss_pred             CCCCCEEEEEEee---eEcCCC-EEEEEECCEE
Confidence            4566889999998   355666 7999999865

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=94.93  E-value=0.044  Score=35.42  Aligned_cols=29  Identities=10%  Similarity=0.358  Sum_probs=22.0

Q ss_pred             EEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        43 ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      +.|++|+.|.|.|...   +.+.|+ ++|.|++
T Consensus         2 v~~~~G~~VtL~C~~s---~~~~~~-i~W~~~~   30 (94)
T cd07690           2 VLGKKGDTAELPCTAS---QKKSIQ-FHWKNSN   30 (94)
T ss_pred             eEeeCCCCEEEEEEeC---CCCCcE-EEEEECC
Confidence            5799999999999754   455554 6798665

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=94.85  E-value=0.03  Score=33.34  Aligned_cols=26  Identities=31%  Similarity=0.765  Sum_probs=20.8

Q ss_pred             CCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           48 GESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      |+.|.|.|.+.   +.|.| .++|.|++..
T Consensus         1 G~~v~l~C~~~---g~P~p-~v~W~~~~~~   26 (78)
T cd05743           1 GETVEFTCVAT---GVPTP-IINWRLNWGH   26 (78)
T ss_pred             CCEEEEEEEEE---EecCC-EEEEEECCeE
Confidence            89999999874   77766 5889998653

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=94.75  E-value=0.044  Score=33.86  Aligned_cols=29  Identities=21%  Similarity=0.617  Sum_probs=23.4

Q ss_pred             eecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           45 ALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        45 A~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ++.|+.+.|.|.+.   |.|.| .++|.|++.+
T Consensus        14 ~~~g~~v~l~C~~~---G~P~P-~v~W~~~~~~   42 (97)
T cd05869          14 MELEEQITLTCEAS---GDPIP-SITWRTSTRN   42 (97)
T ss_pred             EEcCCCEEEEEEee---EeCCC-EEEEEECCcc
Confidence            56789999999976   66777 4899998754

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=94.74  E-value=0.047  Score=33.17  Aligned_cols=26  Identities=31%  Similarity=0.742  Sum_probs=20.6

Q ss_pred             CCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           48 GESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      |+.|.|.|.+   .+.|.|. +.|.|+|..
T Consensus         1 G~~v~L~C~~---~g~P~p~-v~W~k~g~~   26 (90)
T cd05726           1 GRTVTFQCEA---TGNPQPA-IFWQKEGSQ   26 (90)
T ss_pred             CCEEEEEEEC---CccCCCE-EEEEeCCCc
Confidence            8999999976   4667775 679999853

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=94.62  E-value=0.071  Score=33.74  Aligned_cols=35  Identities=31%  Similarity=0.434  Sum_probs=24.3

Q ss_pred             eEEeecCCeEEEeeecCCC-CC-CCCceEEEeeecccc
Q psy531           42 HITALLGESVVFNCGVDFP-GD-TPVPYVLQWEKKIVK   77 (80)
Q Consensus        42 ~ltA~vGe~VVlnCdvdfP-~~-~PiPYVvqW~KdG~~   77 (80)
                      ...+..||.|.|.|.+.=. .. .| .+-|.|.|+|.+
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p-~~~v~Wyk~~~~   44 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSP-GLNLTWYKSDGK   44 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCC-CceEEEEEcCCC
Confidence            4457789999999985521 01 34 445999999864

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=94.59  E-value=0.046  Score=34.86  Aligned_cols=28  Identities=21%  Similarity=0.248  Sum_probs=21.4

Q ss_pred             CeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           49 ESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        49 e~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      |+|+|.|.+.+..+- .++ +.|.|+|++-
T Consensus         1 ~~~~l~C~v~~d~~l-~~~-~~W~~dg~~i   28 (85)
T cd05853           1 ESIVLPCQVSHDHSL-DIV-FTWSFNGHLI   28 (85)
T ss_pred             CcEEEEEEeccCCCC-CcE-EEEEECCEEC
Confidence            689999999985333 345 6999999754

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=94.55  E-value=0.053  Score=33.44  Aligned_cols=26  Identities=23%  Similarity=0.580  Sum_probs=21.3

Q ss_pred             CCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           48 GESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ||.|.|.|.+.   |.| |-.+.|.|++..
T Consensus         1 g~~~~l~C~~~---g~p-~~~i~W~k~~~~   26 (88)
T cd05735           1 GQKKEMSCTAH---GEK-PIIVRWEKEDRI   26 (88)
T ss_pred             CCeEEEEEEEE---CCC-CCEEEEeeCCEE
Confidence            89999999987   554 558999999854

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=94.42  E-value=0.04  Score=32.94  Aligned_cols=26  Identities=27%  Similarity=0.592  Sum_probs=22.0

Q ss_pred             CCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           48 GESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      |+.|.|.|.+.   |.|.| -+.|.|+|.+
T Consensus         1 g~~~~l~C~a~---G~P~P-~i~W~k~g~~   26 (76)
T cd05868           1 GEDGTLICRAN---GNPKP-SISWLTNGVP   26 (76)
T ss_pred             CCCEEEEEEee---EeCCC-eEEEEECCEE
Confidence            88999999984   77776 5999999875

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=94.36  E-value=0.051  Score=33.82  Aligned_cols=29  Identities=24%  Similarity=0.485  Sum_probs=22.3

Q ss_pred             cCCeEEEeeecCCCCC--CCCceEEEeeecc
Q psy531           47 LGESVVFNCGVDFPGD--TPVPYVLQWEKKI   75 (80)
Q Consensus        47 vGe~VVlnCdvdfP~~--~PiPYVvqW~KdG   75 (80)
                      .|+.|.|.|.+..+..  ..-.+-|+|.|..
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~   31 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLE   31 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeC
Confidence            4999999999886532  2346789999984

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=94.35  E-value=0.057  Score=33.05  Aligned_cols=26  Identities=27%  Similarity=0.480  Sum_probs=19.7

Q ss_pred             CCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           48 GESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ||++.|+|.+.   +.|. +-++|.+.|.+
T Consensus         1 Ge~~~l~C~~~---~~~~-~~~~W~~~~~~   26 (84)
T cd05861           1 GETITVNCIVQ---GNEV-VDFSWTYPGKD   26 (84)
T ss_pred             CCcEEEEEEEE---CCCc-cEEEEEECCcc
Confidence            89999999984   4455 44899987653

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=94.29  E-value=0.032  Score=33.35  Aligned_cols=23  Identities=30%  Similarity=0.691  Sum_probs=18.6

Q ss_pred             EEEeeecCCCCCCCCceEEEeeecccc
Q psy531           51 VVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        51 VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      |.|.|.++   |.|.| .++|.|+|.+
T Consensus         1 v~L~C~~~---g~P~p-~v~W~k~g~~   23 (77)
T cd05760           1 VTLRCHID---GHPRP-TYQWFRDGTP   23 (77)
T ss_pred             CEEEEEee---ecCCC-cEEEEECCEE
Confidence            57999775   77877 6999999875

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=94.19  E-value=0.077  Score=33.33  Aligned_cols=29  Identities=24%  Similarity=0.574  Sum_probs=23.6

Q ss_pred             eecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           45 ALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        45 A~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +..|+.|.|.|.+.   |.|.| .+.|.|+|.+
T Consensus        16 ~~~~~~v~l~C~a~---G~P~P-~i~W~k~~~~   44 (93)
T cd05849          16 ESTEGKVSVNCRAR---ANPFP-IYKWRKNNLD   44 (93)
T ss_pred             CccCCeEEEeCcCc---cCCCC-EEEEEECCEE
Confidence            44577999999984   77888 6999999865

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=94.18  E-value=0.082  Score=34.01  Aligned_cols=32  Identities=19%  Similarity=0.172  Sum_probs=27.7

Q ss_pred             ceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           41 VHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        41 ~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..++...|++|+|.|....+.-+     +.|.++|.+
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~~A~-----v~W~~ng~~   35 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSNLAS-----PVWLFNGTP   35 (85)
T ss_pred             eEEEEecCCCEEEECCCCCCCcc-----EEEEECCcc
Confidence            56889999999999999988655     999999875

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=94.16  E-value=0.035  Score=32.31  Aligned_cols=23  Identities=30%  Similarity=0.702  Sum_probs=18.7

Q ss_pred             EEEeeecCCCCCCCCceEEEeeecccc
Q psy531           51 VVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        51 VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      |.|.|.+.   |.|.|. ++|.|+|.+
T Consensus         1 v~L~C~~~---g~P~p~-i~W~k~g~~   23 (69)
T cd05746           1 VQIPCSAQ---GDPEPT-ITWNKDGVQ   23 (69)
T ss_pred             CEeEecce---EeCCCE-EEEEECCEE
Confidence            56889875   788886 899999865

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>PHA02785 IL-beta-binding protein; Provisional

Probab=94.10  E-value=0.076  Score=40.25  Aligned_cols=38  Identities=16%  Similarity=0.261  Sum_probs=28.6

Q ss_pred             CCcceEEeecCCeEEEeeecC-CCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVD-FPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvd-fP~~~PiPYVvqW~KdG~~   77 (80)
                      +.|+.+++..|+.|.|.|.+. +|... -| .+.|.|+|.+
T Consensus       225 ~~p~~~~~~~G~~v~L~C~a~g~P~~~-~~-~v~W~kng~~  263 (326)
T PHA02785        225 QLPEGVVTSIGSNLTIACRVSLRPPTT-DA-DVFWISNGMY  263 (326)
T ss_pred             cCCCcEEecCCCcEEEEEEEECCCCCC-Cc-eEEEEECCEE
Confidence            356677888999999999998 45321 13 5899999863

>PHA03376 BARF1; Provisional

Probab=94.08  E-value=0.11  Score=40.09  Aligned_cols=33  Identities=24%  Similarity=0.211  Sum_probs=26.4

Q ss_pred             eEEeecCCeEEEeeecC-CCCCCCCceEEEeeeccc
Q psy531           42 HITALLGESVVFNCGVD-FPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        42 ~ltA~vGe~VVlnCdvd-fP~~~PiPYVvqW~KdG~   76 (80)
                      -++|++||.|+|.|+.. ...+  .=-.|.|.|++.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa--~~MrIrWqKs~p   53 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLG--PEIEVSWFKLGP   53 (221)
T ss_pred             chhheeCCcEEEEecccCccCC--CceEEEEEecCC
Confidence            57899999999999998 4443  336799999764

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=94.05  E-value=0.077  Score=34.10  Aligned_cols=28  Identities=18%  Similarity=0.291  Sum_probs=23.6

Q ss_pred             ecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           46 LLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        46 ~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..|+.|.|.|.+.   |.|.| .+.|.|+|.+
T Consensus        21 ~~g~~v~L~C~a~---G~P~p-~i~W~k~g~~   48 (109)
T cd05773          21 DGSSDANLVCQAQ---GVPRV-QFRWAKNGVP   48 (109)
T ss_pred             CCCCEEEEEEECc---ccCCC-EEEEEECCEE
Confidence            4678999999996   78877 7999999864

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=94.02  E-value=0.094  Score=27.35  Aligned_cols=27  Identities=30%  Similarity=0.534  Sum_probs=19.2

Q ss_pred             cCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           47 LGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        47 vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|+.|.|.|.+.   +.|. .-+.|.|+|..
T Consensus         1 ~g~~~~l~C~~~---~~~~-~~v~W~~~~~~   27 (63)
T smart00408        1 EGQSVTLTCPAE---GDPV-PNITWLKDGKP   27 (63)
T ss_pred             CCceEEEEeeCc---cCCC-CeEEEEECCEE
Confidence            489999999943   3333 35899998754

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=93.86  E-value=0.1  Score=32.87  Aligned_cols=29  Identities=14%  Similarity=0.318  Sum_probs=21.8

Q ss_pred             eEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           42 HITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        42 ~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .+++..|++|.|.|...    .|.|+ ++|.|++
T Consensus         5 ~~~~~eG~~v~L~C~~~----~p~p~-v~Wykq~   33 (91)
T cd05871           5 VVYGVENNSTFLECLPK----SPQAS-VKWLFQR   33 (91)
T ss_pred             EEEEecCCcEEEEEECC----CCCce-EEEEEEC
Confidence            34588999999999943    44555 7999853

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=93.86  E-value=0.067  Score=32.07  Aligned_cols=26  Identities=23%  Similarity=0.480  Sum_probs=19.6

Q ss_pred             CeEEEeeecCCCCCCCCce-EEEeeecccc
Q psy531           49 ESVVFNCGVDFPGDTPVPY-VLQWEKKIVK   77 (80)
Q Consensus        49 e~VVlnCdvdfP~~~PiPY-VvqW~KdG~~   77 (80)
                      |+|.|.|.+.   +.|.|- -+.|.|+|.+
T Consensus         1 e~~~L~C~~~---g~P~p~i~~~W~~~g~~   27 (85)
T cd04970           1 ESITLQCHAS---HDPTLDLTFTWSFNGVP   27 (85)
T ss_pred             CcEEEEEEEe---cCCCCCeEEEEEECCeE
Confidence            6799999996   445553 3799999875

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=93.65  E-value=0.16  Score=33.43  Aligned_cols=38  Identities=18%  Similarity=0.282  Sum_probs=29.2

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .++++.+++..|+.++|.|+.  |.+.|-|- +.|.+++..
T Consensus         7 ~~~~~~v~V~eG~~~~L~C~p--P~g~P~P~-i~W~~~~~~   44 (95)
T cd05845           7 KEKIRPVEVEEGDSVVLPCNP--PKSAVPLR-IYWMNSDLL   44 (95)
T ss_pred             ccccceeEEecCCCEEEEecC--CCCCCCCE-EEEECCCCc
Confidence            355677889999999999975  66776665 699987643

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>PHA02982 hypothetical protein; Provisional

Probab=93.55  E-value=0.09  Score=41.25  Aligned_cols=59  Identities=15%  Similarity=0.380  Sum_probs=42.2

Q ss_pred             chhHHHHHHHHHHHHhhccCCCCCCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           13 NLHHISLQVLLIITLVHFKGVSPDISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        13 ~~~~~~~~~ll~i~l~~~sg~~g~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      |+--|+++.++.+-|.+.-+---+.+|--.+.|.||++|.|+|.  ||....|-. .-|.++
T Consensus         4 n~~~~~i~i~~~~~~~~~y~e~~~~~d~~dv~a~vd~~V~L~C~--~~~~~~i~~-~~W~~~   62 (251)
T PHA02982          4 NLFTIAIAIIIFFGLINIYDEEDLKEDTADVNATVDQEVKLQCL--FKDADEISR-AMWKGD   62 (251)
T ss_pred             hhhhHHHHHHHHhhhhhccCchhcccchhhhhccCCCcEEEEec--CCCcchhhh-heeeCC
Confidence            56667777766565655555544566667788999999999999  997666644 458775

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=93.50  E-value=0.17  Score=34.47  Aligned_cols=37  Identities=22%  Similarity=0.329  Sum_probs=26.8

Q ss_pred             ceEEeecCCeEEEeeecC-------CCCCCCCceEEEeeecccc
Q psy531           41 VHITALLGESVVFNCGVD-------FPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        41 ~~ltA~vGe~VVlnCdvd-------fP~~~PiPYVvqW~KdG~~   77 (80)
                      +.+.+..||.|+|+|.+-       |+..+-...-|-|.|+|.+
T Consensus         8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~   51 (104)
T cd05896           8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGD   51 (104)
T ss_pred             eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCC
Confidence            456789999999999972       3333334457999999744

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=93.50  E-value=0.12  Score=33.77  Aligned_cols=31  Identities=26%  Similarity=0.363  Sum_probs=25.2

Q ss_pred             ceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           41 VHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        41 ~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      +.+++..|++|.|+|.++...+    |.++|-|-|
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~----~~v~w~~~~   35 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDD----SVIQLLNPN   35 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCc----cEEEEEecC
Confidence            4588999999999999998742    557887665

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=93.39  E-value=0.12  Score=31.60  Aligned_cols=27  Identities=15%  Similarity=0.319  Sum_probs=19.7

Q ss_pred             CCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           48 GESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |+.|.|.|.+.-+. ..-.+-+.|.|..
T Consensus         1 G~~v~L~C~~~~~~-~~~~~~v~W~k~~   27 (100)
T cd05713           1 GEDAELPCHLSPKM-SAEHMEVRWFRSQ   27 (100)
T ss_pred             CCcEEEEeEEcCCC-CCCeeEEEEEECC
Confidence            89999999996432 3344568898864

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=93.27  E-value=0.12  Score=32.78  Aligned_cols=34  Identities=21%  Similarity=0.318  Sum_probs=24.3

Q ss_pred             EeecCCeEEEeeec--CCCCCCCCceEEEeeeccccc
Q psy531           44 TALLGESVVFNCGV--DFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        44 tA~vGe~VVlnCdv--dfP~~~PiPYVvqW~KdG~~~   78 (80)
                      .+-.|+.+.|.|..  .|+...|.|. +.|.|+|.+-
T Consensus         6 ~~~~g~~~~l~Cp~~~~~~~~~~~p~-i~Wyk~~~~i   41 (92)
T cd05757           6 ILFSTKGGKIVCPDLDDFKNENTLPP-VQWYKDCKLL   41 (92)
T ss_pred             EEeeccCCEEECCChHHccCCCCCCc-EEEeECCEEC
Confidence            37889999999976  3333334444 7999999764

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=93.23  E-value=0.15  Score=37.44  Aligned_cols=36  Identities=14%  Similarity=0.121  Sum_probs=26.8

Q ss_pred             ceEEeecCCeEEEeeecC--CCCCCCCceEEEeeecccc
Q psy531           41 VHITALLGESVVFNCGVD--FPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        41 ~~ltA~vGe~VVlnCdvd--fP~~~PiPYVvqW~KdG~~   77 (80)
                      .......|+.|.|.|...  +|.+.|.| -++|.|+|.+
T Consensus       137 ~~~~~~~G~~v~L~C~~~~~~~~~~p~p-~I~WyKng~~  174 (227)
T PHA02826        137 INYQFNSGKDSKLHCYGTDGISSTFKDY-TLTWYKNGNI  174 (227)
T ss_pred             ccceEecCCCEEEEeeCCCCccccCCCc-eEEEEECCEE
Confidence            345567899999999873  55455555 5899999975

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=93.18  E-value=0.1  Score=31.47  Aligned_cols=27  Identities=30%  Similarity=0.481  Sum_probs=20.7

Q ss_pred             CeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           49 ESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        49 e~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      |.|.|.|.+..+.+ ...+-|.|.|+..
T Consensus         1 ~~v~L~C~~~~~~~-~~~~~v~W~k~~~   27 (98)
T cd05718           1 ESVTLECSFPVPGP-VQITQVTWMKITG   27 (98)
T ss_pred             CCEEEEeEeeCCCC-ceEEEEEEeeECC
Confidence            67999999877643 3456899999864

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=93.12  E-value=0.16  Score=31.14  Aligned_cols=31  Identities=16%  Similarity=0.194  Sum_probs=23.0

Q ss_pred             EeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           44 TALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        44 tA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +...||.|.|+|...-   ...+.-+.|.|+|..
T Consensus        10 ~V~~G~~vtL~C~~~~---~~~~~~~~w~k~g~~   40 (83)
T cd05753          10 VVFEGEPLVLRCHGWK---NKPVYKVTYYRDGKA   40 (83)
T ss_pred             eecCCCCEEEEeeCCC---CCcceEEEEEECCeE
Confidence            4778999999999632   223356899999864

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=92.68  E-value=0.11  Score=30.96  Aligned_cols=23  Identities=22%  Similarity=0.690  Sum_probs=18.7

Q ss_pred             EEEeeecCCCCCCCCceEEEeeecccc
Q psy531           51 VVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        51 VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      |.|.|.+.   |.|.|- +.|.|+|.+
T Consensus         1 i~l~C~~~---G~P~P~-v~W~k~g~~   23 (77)
T cd05733           1 IVIKCEAK---GNPPPT-FSWTRNGTH   23 (77)
T ss_pred             CEEEeeCc---ccCCCe-EEEEECCeE
Confidence            46889875   888886 999999865

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=92.47  E-value=0.15  Score=29.35  Aligned_cols=23  Identities=39%  Similarity=0.775  Sum_probs=17.7

Q ss_pred             EEEeeecCCCCCCCCceEEEeeecccc
Q psy531           51 VVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        51 VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      |.|.|.++   |.|.|. +.|.|++..
T Consensus         1 v~l~C~~~---g~P~p~-v~W~k~~~~   23 (69)
T cd05725           1 VEFQCEVG---GDPVPT-VLWRKEDGE   23 (69)
T ss_pred             CEEEEECc---cCCCCE-EEEEECCcc
Confidence            57899774   778775 899998653

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=92.39  E-value=0.12  Score=30.28  Aligned_cols=24  Identities=33%  Similarity=0.740  Sum_probs=19.1

Q ss_pred             eEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           50 SVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        50 ~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|.|.|.++   |.|.|- +.|.|+|..
T Consensus         1 ~v~l~C~~~---G~P~p~-v~W~k~g~~   24 (71)
T cd05723           1 DVIFECEVT---GKPTPT-VKWVKNGDM   24 (71)
T ss_pred             CEEEEEEEE---EeCCCE-EEEEECCeE
Confidence            378999985   778774 799999864

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=92.38  E-value=0.13  Score=31.04  Aligned_cols=23  Identities=26%  Similarity=0.717  Sum_probs=18.9

Q ss_pred             EEEeeecCCCCCCCCceEEEeeecccc
Q psy531           51 VVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        51 VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ++|.|.++   |.|.|. ++|.|+|.+
T Consensus         1 ~~l~C~~~---G~P~P~-v~W~k~g~~   23 (77)
T cd05875           1 IIIECEAK---GNPVPT-FQWTRNGKF   23 (77)
T ss_pred             CEEEEecc---ccCCCE-EEEEECCEE
Confidence            47899886   888887 899999864

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=92.17  E-value=0.22  Score=30.83  Aligned_cols=29  Identities=21%  Similarity=0.440  Sum_probs=21.5

Q ss_pred             cCCeEEEeeecCCC-CCC-CCceEEEeeecc
Q psy531           47 LGESVVFNCGVDFP-GDT-PVPYVLQWEKKI   75 (80)
Q Consensus        47 vGe~VVlnCdvdfP-~~~-PiPYVvqW~KdG   75 (80)
                      .|+.|.|.|.+..+ ... +..+-|.|.|+.
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~   31 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLE   31 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEec
Confidence            49999999998754 222 345779999985

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=92.12  E-value=0.1  Score=30.87  Aligned_cols=24  Identities=29%  Similarity=0.331  Sum_probs=18.6

Q ss_pred             EEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           51 VVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        51 VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      |.|.|.+.   |.|.|- +.|.|+|.+-
T Consensus         1 ~~l~c~v~---g~P~p~-v~W~k~g~~l   24 (71)
T cd04976           1 VRLPVKVK---AYPPPE-IQWYKNGKLI   24 (71)
T ss_pred             CEEEeEEE---EeCCCE-EEEEECCEEC
Confidence            56889875   777775 7999998753

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=92.05  E-value=0.26  Score=28.43  Aligned_cols=25  Identities=20%  Similarity=0.589  Sum_probs=19.3

Q ss_pred             CCeEEEeeecCCCCCCCCceEEEeee-ccc
Q psy531           48 GESVVFNCGVDFPGDTPVPYVLQWEK-KIV   76 (80)
Q Consensus        48 Ge~VVlnCdvdfP~~~PiPYVvqW~K-dG~   76 (80)
                      |+.|.|.|.+.   +.|.| -+.|.| ++.
T Consensus         1 G~~~~l~C~~~---g~P~p-~v~W~~~~~~   26 (74)
T cd05764           1 GQRATLRCKAR---GDPEP-AIHWISPDGK   26 (74)
T ss_pred             CCeEEEEEEcc---CcCCC-EEEEEeCCCE
Confidence            89999999985   66665 689997 443

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=91.42  E-value=0.14  Score=31.12  Aligned_cols=24  Identities=29%  Similarity=0.320  Sum_probs=18.1

Q ss_pred             EEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           51 VVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        51 VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      |-|.|.+.   |.|.| .++|.|+|++-
T Consensus         1 ~~l~c~v~---g~P~P-~v~W~kdg~~l   24 (67)
T cd05863           1 VKLPVKVA---AYPPP-EFQWYKDGKLI   24 (67)
T ss_pred             CEEEEEEE---EeCCC-EEEEEECCEEC
Confidence            35778876   77777 49999999753

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=91.41  E-value=0.21  Score=30.70  Aligned_cols=31  Identities=16%  Similarity=0.326  Sum_probs=21.6

Q ss_pred             EEeecCCeEEEeeecCCCC-CCCCceEEEeeeccc
Q psy531           43 ITALLGESVVFNCGVDFPG-DTPVPYVLQWEKKIV   76 (80)
Q Consensus        43 ltA~vGe~VVlnCdvdfP~-~~PiPYVvqW~KdG~   76 (80)
                      ++++.|+.|.|+|.+.-.. +.   +-++|.|+..
T Consensus         1 ~~v~~G~~v~l~C~~~~~~~~~---~~i~Wy~q~~   32 (98)
T cd04984           1 LSVSPGETVTITCTGSSGNISG---NYVNWYQQKP   32 (98)
T ss_pred             CccCCCCCEEEEEEEcCCCcCC---CCEEEEEECC
Confidence            4678999999999875331 22   3388988743

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=91.16  E-value=0.17  Score=30.87  Aligned_cols=23  Identities=22%  Similarity=0.611  Sum_probs=18.3

Q ss_pred             EEEeeecCCCCCCCCceEEEeeecccc
Q psy531           51 VVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        51 VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      |.|.|.+.   |.|.|. +.|.|+|..
T Consensus         1 v~l~C~v~---G~P~P~-i~W~k~~~~   23 (75)
T cd05892           1 VKLECQIS---AIPPPK-IFWKRNNEM   23 (75)
T ss_pred             CEEEEEEE---ecCCCe-EEEEECCEE
Confidence            57889874   778885 899999865

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=91.10  E-value=0.32  Score=29.02  Aligned_cols=28  Identities=32%  Similarity=0.396  Sum_probs=20.2

Q ss_pred             CCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           48 GESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ||.+.|.|.+.-..+  ++.-++|.+.|..
T Consensus         1 Ge~~~L~C~~~g~~~--~~~~i~W~~~~~~   28 (84)
T cd05742           1 GETLVLNCTVLTELN--EGVDFQWTYPGKK   28 (84)
T ss_pred             CCeEEEEEEEEeCCC--ccEEEEEecCCcc
Confidence            899999999964311  4556999876643

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=90.95  E-value=0.17  Score=29.84  Aligned_cols=23  Identities=22%  Similarity=0.599  Sum_probs=17.3

Q ss_pred             EEEeeecCCCCCCCCceEEEeeecccc
Q psy531           51 VVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        51 VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      |.|.|.++   |.|.| .++|.|++.+
T Consensus         1 a~l~C~~~---G~P~p-~v~W~k~~~~   23 (74)
T cd05738           1 ATMLCAAS---GNPDP-EITWFKDFLP   23 (74)
T ss_pred             CEEEEEEe---EecCC-EEEEEECCEE
Confidence            47899764   77766 6899999764

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=90.95  E-value=0.31  Score=33.43  Aligned_cols=28  Identities=29%  Similarity=0.399  Sum_probs=22.5

Q ss_pred             cCCeEEEeeecCCCC-------CCCCceEEEeeec
Q psy531           47 LGESVVFNCGVDFPG-------DTPVPYVLQWEKK   74 (80)
Q Consensus        47 vGe~VVlnCdvdfP~-------~~PiPYVvqW~Kd   74 (80)
                      .|++|.|.|.+.+..       ..+-+..|+|.|-
T Consensus         1 ~~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~   35 (117)
T cd05901           1 LSGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKI   35 (117)
T ss_pred             CCCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEe
Confidence            489999999999642       3556789999996

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=90.93  E-value=0.17  Score=30.65  Aligned_cols=23  Identities=30%  Similarity=0.666  Sum_probs=18.2

Q ss_pred             EEEeeecCCCCCCCCceEEEeeecccc
Q psy531           51 VVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        51 VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      |.|.|.+.   |.|.| .+.|.|+|.+
T Consensus         1 v~l~C~v~---G~P~P-~v~W~k~~~~   23 (75)
T cd05893           1 VRLECRVS---GVPHP-QIFWKKENES   23 (75)
T ss_pred             CEEEEEEe---EecCC-EEEEEECCEE
Confidence            56888875   88888 6889999765

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=90.84  E-value=0.23  Score=28.99  Aligned_cols=25  Identities=16%  Similarity=0.293  Sum_probs=17.5

Q ss_pred             EEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           51 VVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        51 VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      ++|.|...  .+ +++..++|.|+|.+.
T Consensus         1 ~~L~C~a~--~~-~p~~~~~W~~~g~~i   25 (76)
T cd05895           1 LVLRCETV--SE-YPSLRFKWFKNGKEI   25 (76)
T ss_pred             CEEEEecc--cC-CCCCceEEEECCccc
Confidence            47999974  22 344579999998754

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=90.65  E-value=0.25  Score=28.65  Aligned_cols=23  Identities=22%  Similarity=0.501  Sum_probs=18.6

Q ss_pred             EEEeeecCCCCCCCCceEEEeeecccc
Q psy531           51 VVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        51 VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      |.|.|.+.   |.|.| -+.|.|+|..
T Consensus         2 ~~l~c~~~---G~P~p-~v~W~k~g~~   24 (74)
T cd05748           2 VRLEVPIS---GRPTP-TVTWSKDGKP   24 (74)
T ss_pred             EEEEeeEe---eeCCC-eEEEEECCEE
Confidence            67888775   88888 4999999865

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=90.65  E-value=0.33  Score=30.66  Aligned_cols=31  Identities=13%  Similarity=0.134  Sum_probs=22.5

Q ss_pred             EEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        43 ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      ++++.|+.|.|.|.+.=.   ...+-+.|.|+..
T Consensus         1 ~~v~~G~~vtL~C~~~~~---~~~~~~~Wyrq~~   31 (107)
T cd07700           1 ILVQTNNTVKLSCEAKGI---SENTRIYWLRWRQ   31 (107)
T ss_pred             CEEcCCCCEEEEEEEecC---CCCCeEEEEEECC
Confidence            468999999999997521   1234689998844

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=90.63  E-value=0.72  Score=30.71  Aligned_cols=34  Identities=12%  Similarity=0.237  Sum_probs=25.4

Q ss_pred             cceEEeecCCeEEEeeecCCCC-CCCCceEEEeeec
Q psy531           40 AVHITALLGESVVFNCGVDFPG-DTPVPYVLQWEKK   74 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~-~~PiPYVvqW~Kd   74 (80)
                      |..++|.+|+.|.|.|.+.... ..+.+ -|+|...
T Consensus         5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~-~v~W~~~   39 (116)
T cd05879           5 DREVYGTVGSDVTLSCSFWSSEWISDDI-SFTWHYQ   39 (116)
T ss_pred             cceEEEEcCCcEEEEEEEecCCCCCCcE-EEEEEEc
Confidence            4567899999999999996643 34554 5899553

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=90.59  E-value=0.58  Score=30.80  Aligned_cols=35  Identities=23%  Similarity=0.289  Sum_probs=26.5

Q ss_pred             ceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           41 VHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        41 ~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      +-..+..|+.++|.|.  -|.+.|.| .+.|.|++.+.
T Consensus        11 ~~~~v~eG~~~~L~C~--pP~g~P~p-~~~W~k~~~~~   45 (96)
T cd05727          11 DEVKVKEGWGVVLFCD--PPPHYPDL-SYRWLLNEFPN   45 (96)
T ss_pred             CceeeeeCCcEEEeeC--CCCCCCCC-EEEEEECCccc
Confidence            3366889999999996  35666654 48999998753

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=90.46  E-value=0.37  Score=29.88  Aligned_cols=25  Identities=24%  Similarity=0.691  Sum_probs=19.7

Q ss_pred             CCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           48 GESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |+.|.|.|.+....+   .+.|.|.|..
T Consensus         1 G~~vtL~C~~~~~~~---~~~v~W~k~~   25 (97)
T cd05846           1 GGNVTLSCNLTLPEE---VLQVTWQKIQ   25 (97)
T ss_pred             CCcEEEEEEeCCCCe---eEEEEEEEcC
Confidence            899999999876532   4789999863

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=90.35  E-value=0.29  Score=30.75  Aligned_cols=27  Identities=22%  Similarity=0.315  Sum_probs=20.1

Q ss_pred             eecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           45 ALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        45 A~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      +.+|++|.|+|.+.-+  .. -..+.|.|.
T Consensus         1 g~~G~sVtL~c~~~~~--~~-~~~v~W~~~   27 (97)
T cd05775           1 GILGGSVTLPLNIPDG--TE-IESITWSFN   27 (97)
T ss_pred             CccCCeEEEeCCCCCC--cE-EEEEEEecC
Confidence            4689999999988532  22 267999886

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>PHA02785 IL-beta-binding protein; Provisional

Probab=90.31  E-value=0.24  Score=37.55  Aligned_cols=32  Identities=22%  Similarity=0.296  Sum_probs=24.3

Q ss_pred             eecCCeEEEeeecCC--CCCCCCceEEEeeecccc
Q psy531           45 ALLGESVVFNCGVDF--PGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        45 A~vGe~VVlnCdvdf--P~~~PiPYVvqW~KdG~~   77 (80)
                      +..||.++|.|.+..  ..|.| ++-+.|.|.|.+
T Consensus        38 ~~~ge~~~l~C~~~~~~~~g~p-~~~i~W~K~g~~   71 (326)
T PHA02785         38 ELENEPVILPCPQINTLSSGYN-ILDILWEKRGAD   71 (326)
T ss_pred             hhcCCCEEEECCCccccccCCC-CceEEEEECCCc
Confidence            667999999999742  24555 468999999754

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=90.09  E-value=0.39  Score=31.90  Aligned_cols=29  Identities=24%  Similarity=0.473  Sum_probs=21.5

Q ss_pred             cCCeEEEeeecCCCC-C-------CCCceEEEeeecc
Q psy531           47 LGESVVFNCGVDFPG-D-------TPVPYVLQWEKKI   75 (80)
Q Consensus        47 vGe~VVlnCdvdfP~-~-------~PiPYVvqW~KdG   75 (80)
                      +|+.|.|.|.+..+. .       .|-...++|.|..
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~   37 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFIS   37 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEec
Confidence            599999999998753 1       1234678999963

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=90.08  E-value=0.43  Score=28.34  Aligned_cols=25  Identities=24%  Similarity=0.137  Sum_probs=19.2

Q ss_pred             CCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           48 GESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      ||+|.|.|.+..    ..++-+.|.|...
T Consensus         1 G~~VtL~c~~~~----~~~~~i~W~~~~~   25 (92)
T cd05741           1 GESVTLPVSNLP----ENLQEITWYKGKD   25 (92)
T ss_pred             CCcEEEEcccCC----CCCEEEEEECCCC
Confidence            899999998764    2346799999753

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=89.89  E-value=0.36  Score=30.66  Aligned_cols=29  Identities=28%  Similarity=0.335  Sum_probs=21.3

Q ss_pred             EeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           44 TALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        44 tA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      +++.|+.|.|+|.+.-.    -.+-+.|.|+..
T Consensus         2 ~v~~G~~vtL~C~~~~~----~~~~v~Wyrq~~   30 (104)
T cd05720           2 DAELGQKVELKCEVLNS----SPTGCSWLFQPP   30 (104)
T ss_pred             cccCCCeEEEEEEecCC----CCCcEEEEEeCC
Confidence            47899999999986432    124588988763

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=89.88  E-value=0.42  Score=30.00  Aligned_cols=28  Identities=25%  Similarity=0.228  Sum_probs=22.2

Q ss_pred             eecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           45 ALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        45 A~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      -..||.|.|+|....+.+     .++|.|+|..
T Consensus        12 V~~G~~VTL~C~~~~~~~-----~f~l~k~g~~   39 (94)
T cd05711          12 VPSGENVTLQCHSDIRFD-----RFILYKEGRS   39 (94)
T ss_pred             cCCCCeEEEEEecCCCCC-----EEEEEECCCC
Confidence            457999999997776554     3899999865

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=89.85  E-value=0.36  Score=28.14  Aligned_cols=22  Identities=23%  Similarity=0.622  Sum_probs=17.2

Q ss_pred             EEEeeecCCCCCCCCceEEEeeeccc
Q psy531           51 VVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        51 VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      |.|.|.+.   |.|.| .+.|.|+|.
T Consensus         1 a~l~C~~~---G~P~P-~v~W~k~~~   22 (75)
T cd05763           1 ARLECAAT---GHPTP-QIAWQKDGG   22 (75)
T ss_pred             CEeEeecc---cccCC-EEEEEeCCC
Confidence            46889663   78887 589999985

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=89.84  E-value=0.34  Score=29.21  Aligned_cols=23  Identities=22%  Similarity=0.660  Sum_probs=18.6

Q ss_pred             EEEeeecCCCCCCCCceEEEeeecccc
Q psy531           51 VVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        51 VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      |+|.|.+   .|.|.|- ++|.|+|.+
T Consensus         1 ~~l~C~a---~G~P~P~-i~W~k~g~~   23 (77)
T cd05874           1 IVIQCEA---KGKPPPS-FSWTRNGTH   23 (77)
T ss_pred             CEEEeeC---cccCCCe-EEEEECCeE
Confidence            5788987   4888888 599999875

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=89.42  E-value=0.32  Score=28.47  Aligned_cols=23  Identities=22%  Similarity=0.621  Sum_probs=18.0

Q ss_pred             EEEeeecCCCCCCCCceEEEeeecccc
Q psy531           51 VVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        51 VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      |+|.|.+.   |.|.| .+.|.|++.+
T Consensus         1 ~~L~C~~~---G~P~P-~v~W~k~~~~   23 (71)
T cd05876           1 LVLECIAE---GLPTP-EVHWDRIDGP   23 (71)
T ss_pred             CEEEEEee---EecCC-eEEEEECCcC
Confidence            47889874   77877 5899999764

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=89.39  E-value=0.68  Score=30.28  Aligned_cols=32  Identities=28%  Similarity=0.364  Sum_probs=23.9

Q ss_pred             eEEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           42 HITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        42 ~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      -..|..|+.|.|-|.+.   +.|.|=.+.|..++.
T Consensus        10 s~~~~~G~~~~L~C~~~---s~P~P~~i~W~w~~~   41 (98)
T cd05898          10 VQYAVRGERGKVKCFIG---STPPPDRIAWAWKEN   41 (98)
T ss_pred             eEEEeCCCcEEEEEEEc---cCCCCcEEEEEEccc
Confidence            34589999999999994   455666677777654

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=89.06  E-value=0.34  Score=28.20  Aligned_cols=23  Identities=26%  Similarity=0.664  Sum_probs=17.3

Q ss_pred             EEEeeecCCCCCCCCceEEEeeecccc
Q psy531           51 VVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        51 VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +.|.|.+.   |.|.| .++|.|+|.+
T Consensus         1 ~~L~C~v~---g~P~p-~v~W~k~~~~   23 (76)
T cd05736           1 ASLRCHAE---GIPLP-RLTWLKNGMD   23 (76)
T ss_pred             CEeEeEee---ecCCC-EEEEEECCEE
Confidence            46889876   56666 4799999865

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=88.82  E-value=0.36  Score=28.78  Aligned_cols=24  Identities=29%  Similarity=0.556  Sum_probs=18.4

Q ss_pred             EEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           51 VVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        51 VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      |.|.|.+.   |.|.|. +.|.|+|.+-
T Consensus         1 v~L~C~v~---G~P~P~-v~W~k~~~~i   24 (75)
T cd05744           1 VRLECRVS---AIPPPQ-IFWKKNNEML   24 (75)
T ss_pred             CEEEEEEe---ecCCCe-EEEEECCEEC
Confidence            46889884   777775 8999998653

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=88.78  E-value=0.33  Score=27.38  Aligned_cols=23  Identities=22%  Similarity=0.531  Sum_probs=17.9

Q ss_pred             EEEeeecCCCCCCCCceEEEeeecccc
Q psy531           51 VVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        51 VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      |.|.|.+.   |.|.|. ++|.|++.+
T Consensus         1 v~l~C~~~---g~P~p~-v~W~k~~~~   23 (71)
T cd05731           1 LLLECIAE---GLPTPE-ISWIKIGGE   23 (71)
T ss_pred             CEEEEEee---EecCCe-EEEEECCeE
Confidence            46889875   778886 899998764

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=88.42  E-value=0.51  Score=26.88  Aligned_cols=23  Identities=22%  Similarity=0.398  Sum_probs=17.1

Q ss_pred             EEeeecCCCCC-CCCceEEEeeeccccc
Q psy531           52 VFNCGVDFPGD-TPVPYVLQWEKKIVKN   78 (80)
Q Consensus        52 VlnCdvdfP~~-~PiPYVvqW~KdG~~~   78 (80)
                      +|.|.+.   + .|+| -++|.|+|.+.
T Consensus         2 ~l~C~~~---g~~P~p-~~~W~k~g~~l   25 (75)
T cd05750           2 VLKCEAT---SEYPSL-RFKWFKDGKEL   25 (75)
T ss_pred             EEEEEcc---CCCCCc-eEEEEcCCeec
Confidence            6889886   4 5655 67999998653

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>smart00406 IGv Immunoglobulin V-Type

Probab=88.38  E-value=0.65  Score=26.22  Aligned_cols=25  Identities=20%  Similarity=0.355  Sum_probs=19.1

Q ss_pred             eEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           50 SVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        50 ~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      .|.|+|.+..... + .+.+.|.|+..
T Consensus         1 ~v~l~C~~~~~~~-~-~~~v~W~~~~~   25 (81)
T smart00406        1 SVTLSCKASGFTF-S-SYYVSWVRQPP   25 (81)
T ss_pred             CEEEEEEEecccc-c-eeEEEEEEeCC
Confidence            3789999887643 2 68899999764

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=88.36  E-value=0.61  Score=28.75  Aligned_cols=28  Identities=14%  Similarity=0.237  Sum_probs=22.7

Q ss_pred             eecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           45 ALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        45 A~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ...|+.|.|.|.-+.|...     .+|.|+|..
T Consensus        13 V~~G~~VtL~C~~~~~~~~-----f~l~k~g~~   40 (91)
T cd05751          13 VPLGKPVTLRCQGPYGAVE-----YRLYREGST   40 (91)
T ss_pred             cCCCCcEEEEEecCCCCCE-----EEEEECCCC
Confidence            5689999999999877444     688998764

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=88.15  E-value=0.7  Score=30.07  Aligned_cols=35  Identities=14%  Similarity=0.241  Sum_probs=25.4

Q ss_pred             CCcceEEeecCCeEEEeeecCCCC-CCCCceEEEeeecc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPG-DTPVPYVLQWEKKI   75 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~-~~PiPYVvqW~KdG   75 (80)
                      +.|..++++.|+.|.|+|.+.-.. +.   +-+.|.|+.
T Consensus         2 ~~~~~~~v~~G~~vtL~C~~~~~~~~~---~~~~WYkQ~   37 (117)
T cd04981           2 VESGPGLVKPGQSLKLSCKASGFTFTS---YGVNWVRQA   37 (117)
T ss_pred             ccCCCeEEcCCCCEEEEEEEeCCCccc---ceEEEEEEC
Confidence            467788899999999999864221 12   348898874

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=87.81  E-value=0.77  Score=34.57  Aligned_cols=32  Identities=22%  Similarity=0.333  Sum_probs=25.1

Q ss_pred             ceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           41 VHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        41 ~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      ..+++..||.|.|.|....+...+.   |+|.|+.
T Consensus        23 ~~v~V~ege~VtLsCs~t~s~~~~q---VtWkK~~   54 (189)
T PHA02987         23 VKITVSEHVNVKISCNKTSSFNSIL---ITWKKNN   54 (189)
T ss_pred             EEEEEcCCCCEEEEEecCCCCccce---EEEEEcC
Confidence            4577999999999999876654433   9999864

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=87.42  E-value=0.81  Score=30.89  Aligned_cols=34  Identities=21%  Similarity=0.182  Sum_probs=27.0

Q ss_pred             ceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           41 VHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        41 ~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..+++++||++.|.|.++   .-|.|--++|.|++..
T Consensus        11 ~~~~v~~gE~~~L~V~ie---AYP~p~~~~W~~~~~~   44 (101)
T cd05860          11 TTIFVNAGENLDLIVEYE---AYPKPEHQQWIYMNRT   44 (101)
T ss_pred             ceEEEECCCCEEEEEEEE---eCCCCeeeEEEcCCcc
Confidence            457799999999999997   3345556899999763

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=87.07  E-value=0.42  Score=28.82  Aligned_cols=24  Identities=21%  Similarity=0.191  Sum_probs=18.1

Q ss_pred             EEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           51 VVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        51 VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      |.|.|.+.   |.|.|- +.|.|+|++-
T Consensus         1 ~~~~c~v~---G~P~P~-v~W~k~g~~l   24 (70)
T cd05864           1 VKIPVKYY---GYPPPE-VKWYKNGQLI   24 (70)
T ss_pred             CEEEeEEE---EeCCCE-EEEEECCEEC
Confidence            45777765   777777 6999999764

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=86.96  E-value=0.78  Score=28.11  Aligned_cols=26  Identities=15%  Similarity=0.424  Sum_probs=18.5

Q ss_pred             CeEEEeeecCCCCCCCCce-EEEeeecccc
Q psy531           49 ESVVFNCGVDFPGDTPVPY-VLQWEKKIVK   77 (80)
Q Consensus        49 e~VVlnCdvdfP~~~PiPY-VvqW~KdG~~   77 (80)
                      |.|.|-|.+.   +.|.|= -+.|.|+|.+
T Consensus         1 ~~~~L~C~a~---g~P~p~~~v~W~~~g~~   27 (85)
T cd05854           1 ENLTLQCHAS---HDPTMDLTFTWSLDDFP   27 (85)
T ss_pred             CcEEEEEEEe---cCCCCCeEEEEEECCeE
Confidence            5688999876   445542 3789999865

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd00096 Ig Immunoglobulin domain

Probab=85.23  E-value=1.1  Score=22.34  Aligned_cols=24  Identities=25%  Similarity=0.378  Sum_probs=17.6

Q ss_pred             EEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           51 VVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        51 VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      |.|.|.+..    +.+..++|.|.+...
T Consensus         1 ~~l~C~~~~----~~~~~~~W~~~~~~~   24 (74)
T cd00096           1 VTLTCLASG----PPPPTITWLKNGKPL   24 (74)
T ss_pred             CEEEEEecC----CCCCcEEEEECCEEC
Confidence            468898886    445669999987553

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=83.86  E-value=1.5  Score=27.00  Aligned_cols=27  Identities=30%  Similarity=0.503  Sum_probs=19.5

Q ss_pred             CCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           48 GESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      ||.+.|+|.+.-  +..+.+-++|...+.
T Consensus         1 Ge~~~L~C~~~~--~~~~~~~~~W~~p~~   27 (86)
T cd05862           1 GEKLVLNCTART--ELNVGIDFQWDYPGK   27 (86)
T ss_pred             CCcEEEEEEEEe--CCCCcEEEEEEcCCc
Confidence            899999999942  223346689987664

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=83.07  E-value=1.1  Score=28.50  Aligned_cols=28  Identities=21%  Similarity=0.440  Sum_probs=22.0

Q ss_pred             ecCCeEEEeeecC--CCCCCCCceEEEeeecccc
Q psy531           46 LLGESVVFNCGVD--FPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        46 ~vGe~VVlnCdvd--fP~~~PiPYVvqW~KdG~~   77 (80)
                      ..|+.+.|.|.+.  ||.+    --|.|.|+|.+
T Consensus        12 ~~~~~~~L~C~~~gFyP~~----i~v~W~~~g~~   41 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPE----ITVKWFKNGQE   41 (94)
T ss_pred             cCCCCeEEEEEEeeecCCC----CEEEEEECCee
Confidence            3578899999996  6744    24899999976

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>PRK00059 prsA peptidylprolyl isomerase; Provisional

Probab=82.54  E-value=2.3  Score=31.72  Aligned_cols=46  Identities=9%  Similarity=0.073  Sum_probs=30.1

Q ss_pred             hchhHHHHHHHHHHHHhhccCCCCCCCC----cceEEeecCCeEEEeeec
Q psy531           12 TNLHHISLQVLLIITLVHFKGVSPDISN----AVHITALLGESVVFNCGV   57 (80)
Q Consensus        12 ~~~~~~~~~~ll~i~l~~~sg~~g~~~~----P~~ltA~vGe~VVlnCdv   57 (80)
                      |++-+|.+.+++|++..+..||+.....    +..+.|+||+..|-.=++
T Consensus         2 ~~~~~~~~~~~~~~l~~~~~gc~~~~~~~~~~~~~vvA~Vn~~~It~~e~   51 (336)
T PRK00059          2 KSIKKLVASLLVGVFIFSAVGCNMIEKTPEAIAKSTVATVNGEKITRGDL   51 (336)
T ss_pred             chHHHHHHHHHHHHHHHhhccccccccCccccCCCceEEECCEEeCHHHH
Confidence            4566777777777776666777642222    334569999998865444

>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli

Probab=82.19  E-value=1.3  Score=26.61  Aligned_cols=27  Identities=26%  Similarity=0.390  Sum_probs=23.3

Q ss_pred             EEeecCCeEEEeeecCCCCCCCCceEE
Q psy531           43 ITALLGESVVFNCGVDFPGDTPVPYVL   69 (80)
Q Consensus        43 ltA~vGe~VVlnCdvdfP~~~PiPYVv   69 (80)
                      ..||+||++.|.=.+-=-+|.|+||.-
T Consensus         7 akaK~Ge~I~ltVt~kda~G~pv~n~~   33 (47)
T PF05688_consen    7 AKAKVGETIPLTVTVKDANGNPVPNAP   33 (47)
T ss_pred             hheecCCeEEEEEEEECCCCCCcCCce
Confidence            469999999999888777999999863

These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].

>KOG4221|consensus

Probab=82.12  E-value=2.4  Score=39.93  Aligned_cols=37  Identities=24%  Similarity=0.466  Sum_probs=30.7

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccccC
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKNN   79 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~~   79 (80)
                      +|+  .|--|.+|+|+|--.+-.+  .+|.++|.|||...+
T Consensus        47 ep~--d~~~~~svlLecs~~~~~~--~~~~i~wkkDg~~l~   83 (1381)
T KOG4221|consen   47 EPS--DAMEGSSVLLECSAYAAGG--TSVKIEWKKDGSQLN   83 (1381)
T ss_pred             ccc--ccccccceEEeccccccCC--CCeeEEEccCchhhh
Confidence            566  3478999999999988877  689999999998654

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=81.97  E-value=1.7  Score=28.56  Aligned_cols=29  Identities=21%  Similarity=0.304  Sum_probs=22.0

Q ss_pred             eEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           42 HITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        42 ~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      --.|.+|+.|+|.|+. +|..   .--+.|.|.
T Consensus         7 p~~~~~G~~V~L~v~~-~p~~---~~~~~W~kg   35 (105)
T cd05774           7 PPQVAEGENVLLLVHN-LPEN---LLAYAWYKG   35 (105)
T ss_pred             CCcccCCCCEEEEecC-CCCC---ceEEEEEcC
Confidence            3347899999999987 6743   245899995

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=81.59  E-value=1.1  Score=27.54  Aligned_cols=23  Identities=22%  Similarity=0.316  Sum_probs=17.1

Q ss_pred             EEeeecCCCCCCCCceEEEeeeccccc
Q psy531           52 VFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        52 VlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      -|-|.+.   |.|.|- +.|.|+|.+.
T Consensus         2 ~l~c~v~---g~P~P~-v~W~kdg~~l   24 (72)
T cd07702           2 RLTPKVK---AFPAPE-VIWLKDGLPA   24 (72)
T ss_pred             eEEeeEE---EcCCCe-EEEEECCEEC
Confidence            3667654   788887 5999999763

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd00098 IgC Immunoglobulin Constant domain

Probab=80.36  E-value=1.6  Score=25.94  Aligned_cols=30  Identities=30%  Similarity=0.452  Sum_probs=22.3

Q ss_pred             ecCCeEEEeeecCCCCCC-CCceEEEeeeccccc
Q psy531           46 LLGESVVFNCGVDFPGDT-PVPYVLQWEKKIVKN   78 (80)
Q Consensus        46 ~vGe~VVlnCdvdfP~~~-PiPYVvqW~KdG~~~   78 (80)
                      ..|+.+.|.|.+.   |- |.+--+.|.|+|.+.
T Consensus        11 ~~~~~~~L~C~a~---g~~P~~~~i~W~~~g~~~   41 (95)
T cd00098          11 LLGGSVTLTCLAT---GFYPPDITVTWLKNGKEL   41 (95)
T ss_pred             HcCCCeEEEEEEe---eEECCCcEEEEEECCEEC
Confidence            4689999999986   22 334569999998763

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	80
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	3e-04
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	3e-04

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 36.1 bits (83), Expect = 3e-04
 Identities = 7/33 (21%), Positives = 15/33 (45%)

Query: 41 VHITALLGESVVFNCGVDFPGDTPVPYVLQWEK 73
          +H+T  + E    +CG +   +      + W+K
Sbjct: 2  IHVTKEVKEVATLSCGHNVSVEELAQTRIYWQK 34

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 36.3 bits (83), Expect = 3e-04
 Identities = 7/32 (21%), Positives = 13/32 (40%)

Query: 42 HITALLGESVVFNCGVDFPGDTPVPYVLQWEK 73
           +   +G  VV +C    P  +     + W+K
Sbjct: 23 SMYGFIGTDVVLHCSFANPLPSVKITQVTWQK 54

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	80
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	97.94
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	97.93
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	97.86
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	97.86
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	97.79
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	97.79
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	97.69
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	97.67
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	97.67
3sob_L	237	Antibody light chain; beta propeller, protein bind	97.67
1xt5_A	135	Variable region-containing chitin-binding protein	97.66
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	97.64
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	97.61
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	97.61
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	97.61
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	97.59
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	97.58
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	97.57
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	97.57
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	97.56
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	97.54
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	97.54
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	97.52
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	97.52
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	97.51
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	97.51
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	97.5
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	97.5
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	97.49
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	97.48
3noi_A	120	Natural cytotoxicity triggering receptor 3; immune	97.46
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	97.45
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	97.43
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	97.42
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	97.42
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	97.4
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	97.39
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	97.39
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	97.38
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	97.38
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	97.37
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	97.37
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	97.36
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	97.35
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	97.35
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	97.35
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	97.33
1nko_A	132	Sialic acid binding IG-like lectin 7; immunoglobul	97.33
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	97.32
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	97.32
1qfo_A	119	Protein (sialoadhesin); immunoglobulin superfamily	97.31
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	97.3
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	97.3
2yz1_A	120	Tyrosine-protein phosphatase non-receptor type sub	97.29
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	97.27
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	97.27
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	97.27
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	97.26
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	97.23
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	97.22
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	97.22
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	97.21
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	97.2
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	97.19
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	97.18
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	97.17
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	97.16
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	97.16
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	97.16
2pnd_A	119	V-SET and immunoglobulin domain containing 4; comp	97.14
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	97.13
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	97.13
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	97.12
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	97.1
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	97.1
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	97.1
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	97.1
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	97.09
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	97.08
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	97.08
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	97.08
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	97.07
2ens_A	96	Advanced glycosylation END product-specific recept	97.07
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	97.07
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	97.06
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	97.05
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	97.03
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	97.03
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	97.02
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	97.01
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	97.01
2z35_A	112	T-cell receptor alpha-chain; immune receptor, immu	96.99
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	96.99
3bia_X	116	T-cell immunoglobulin and mucin domain- containing	96.98
1fo0_A	116	Protein (BM3.3 T cell receptor alpha-chain); class	96.97
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	96.95
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	96.95
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	96.95
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	96.95
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	96.95
1tvd_A	116	T cell receptor, ES204 V delta; immunoreceptor, TC	96.93
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	96.92
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	96.91
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	96.91
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	96.89
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	96.87
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	96.85
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	96.85
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	96.84
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	96.84
2qhl_A	111	Novel immune-type receptor 10; immunoglobulin vari	96.83
2atp_B	115	T-cell surface glycoprotein CD8 beta chain; CD8AB,	96.82
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	96.82
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	96.81
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	96.8
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	96.79
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	96.79
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	96.78
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	96.77
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	96.76
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	96.76
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	96.75
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	96.74
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	96.73
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	96.73
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	96.73
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	96.72
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	96.71
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	96.71
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	96.7
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	96.7
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	96.7
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	96.7
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	96.69
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	96.69
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	96.67
3bj9_1	116	Immunoglobulin IOTA chain, immunoglobulin lambda-	96.67
1fo0_B	112	Protein (BM3.3 T cell receptor beta-chain); class	96.67
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	96.67
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	96.65
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	96.65
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	96.65
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	96.65
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	96.64
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	96.64
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	96.63
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	96.63
3bp6_A	117	Programmed cell death protein 1; PD-1, PD-L2, comp	96.63
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	96.61
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	96.61
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	96.61
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	96.6
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	96.6
1eeq_A	114	Kappa-4 immunoglobulin (light chain); protein stab	96.58
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	96.57
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	96.56
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	96.55
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	96.55
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	96.55
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	96.55
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	96.54
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	96.54
1dqt_A	117	CTLA4, cytotoxic T lymphocyte associated antigen 4	96.52
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	96.52
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	96.52
1u9k_A	114	Triggering receptor expressed on myeloid cells 1;	96.5
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	96.5
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	96.48
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	96.48
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	96.48
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	96.47
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	96.47
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	96.45
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	96.45
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	96.44
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	96.44
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	96.43
3khq_A	133	B-cell antigen receptor complex-associated protei	96.42
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	96.42
2i24_N	121	NEW antigen receptor PBLA8; immunoglobulin fold, i	96.42
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	96.41
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	96.41
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	96.41
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	96.4
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	96.4
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	96.4
2oi9_C	121	V beta, T cell receptor beta chain; TCR, MHC, immu	96.39
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	96.38
3kg5_A	134	B-cell antigen receptor complex-associated protei	96.37
3oai_A	507	Maltose-binding periplasmic protein, myelin prote;	96.37
1u3h_A	110	T-cell receptor alpha-chain; complex, immune syste	95.36
1dlf_L	113	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	96.35
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	96.35
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	96.33
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	96.33
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	96.32
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	96.31
3rrq_A	129	Protein PD-1, programmed cell death protein 1; pro	96.29
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	96.28
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	96.27
1hkf_A	122	NKP44, NK cell activating receptor; natural cytoto	96.27
3bik_B	134	Programmed cell death protein 1; CO-stimulation, r	96.27
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	96.26
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	96.25
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	96.25
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	96.25
2nms_A	124	CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP4	96.24
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	96.24
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	96.24
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	96.22
2ol3_A	142	BM3.3 T-cell receptor alpha-chain; T cell receptor	96.2
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	96.2
2wzp_D	123	Camelid VHH5; baseplate, viral protein; 2.60A {Lam	96.2
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	96.17
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	96.17
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	96.17
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	96.16
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	96.15
3r8b_B	125	G5-8, enterotoxin type B; immunoglobulin-like, OB-	96.13
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	96.13
2otu_A	115	FV light chain variable domain; antibody FV polygl	96.13
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	96.12
2frg_P	106	TREM-like transcript-1; immunoglobulin-like, beta-	96.12
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	96.12
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	96.11
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	96.1
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	96.1
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	96.09
1oaq_L	120	Light chain; antibody, allergy, IGE, conformationa	96.09
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	96.07
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	96.07
3dmm_D	150	T-cell surface glycoprotein CD8 beta chain; T cell	96.05
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	96.04
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	96.03
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	96.01
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	95.99
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	95.97
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	95.96
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	95.96
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	95.92
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	95.9
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	95.89
2yc1_A	117	Single chain antibody fragment 9004G; immune syste	95.85
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	95.85
2xt1_B	121	Camelid VHH 9; viral protein-immune system complex	95.84
3bdb_A	137	Novel immune-type receptor 11; immunoglobulin vari	95.84
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	95.82
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	95.81
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	95.81
2hp4_A	114	T-cell surface glycoprotein CD8 alpha chain; CO-re	95.81
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	95.8
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	95.78
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	95.77
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	95.76
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	95.76
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	95.76
1c5d_H	215	Monoclonal antibody against the main immunogenic t	95.74
3b9v_A	120	Heavy chain variable domain; antibody engineering,	95.74
3u6r_L	143	Antibody 1:7 (light chain); IG-like domain, neutra	95.74
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	95.74
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	95.73
1kxv_C	121	Camelid VHH domain CAB10; beta 8 alpha 8, beta bar	95.72
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	95.72
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	95.71
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	95.69
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	95.69
3ux9_B	256	SCFV antibody; five helices, long loop connecting	95.69
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	95.69
2pkd_A	111	SLAM family member 5; signaling lymphocyte activat	95.68
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	95.66
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	95.66
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	95.65
1yc7_A	124	Anti-VSG immunoglobulin heavy chain variable domai	95.65
2p45_B	123	Antibody CAB-RN05; seMet phasing, camelid single-d	95.64
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	95.64
1sjv_A	114	R9; camelids antibody, domain swapping, heavy chai	95.64
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	95.64
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	95.63
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	95.63
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	95.61
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	95.6
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	95.58
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	95.57
3osk_A	130	Cytotoxic T-lymphocyte protein 4; beta sandwich, h	95.57
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	95.56
1j05_H	121	T84.66 antibody, anti-CEA MAB T84.66, heavy chain;	95.56
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	95.55
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	95.54
2h32_A	126	Immunoglobulin IOTA chain; beta sheets, V and C-ty	95.54
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	95.52
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	95.48
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	95.48
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	95.46
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	95.44
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	95.44
1p4b_L	135	Antibody variable light chain; FV antibody, antige	95.44
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	95.44
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	95.44
2ak4_D	211	SB27 T cell receptor alpha chain; bulged epitopes,	95.42
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	95.41
1xed_A	117	Polymeric-immunoglobulin receptor; IG-like fold, i	95.41
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	95.41
1a2y_B	116	IGG1-kappa D1.3 FV (heavy chain); complex (immunog	95.4
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	95.39
1nez_G	128	T-cell surface glycoprotein CD8 alpha chain; immun	95.38
1oga_D	215	T-cell receptor alpha chain V region, beta-2-micro	95.37
1xiw_D	122	Immunoglobulin heavy chain variable region; CD3-ep	95.37
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	95.37
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	95.35
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	95.35
1rjc_A	137	1D2L19, camelid heavy chain antibody; beta sandwic	95.34
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	95.33
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	95.32
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	95.3
1mfa_H	120	IGG1-lambda Se155-4 FAB (heavy chain); immunoglobu	95.3
1n4x_H	120	Immunoglobulin heavy chain variable region; immune	95.29
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	95.29
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	95.27
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	95.27
2bnu_A	203	TCR alpha chain, T-cell receptor alpha chain C reg	95.25
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	95.24
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	95.19
2x1q_A	127	Gelsolin nanobody; contractIle protein; 1.06A {Lam	95.19
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	95.19
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	95.18
3t0v_A	123	Immunoglobulin variable lambda domain; immunoglobu	95.17
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	95.17
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	95.15
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	95.15
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	95.15
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	95.14
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	95.14
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	95.13
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	95.13
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	95.12
3dmm_C	166	T-cell surface glycoprotein CD8 alpha chain; T cel	95.12
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	95.12
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	95.09
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	95.07
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	95.06
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	95.06
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	95.05
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	95.05
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	95.02
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	95.02
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	95.02
1i3u_A	127	Antibody VHH LAMA domain; VHH fragment, immune sys	94.97
1dlf_H	124	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	94.96
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	94.96
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	94.96
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	94.96
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	94.95
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	94.95
1lp9_E	194	T-cell receptor alpha chain; immunoregulatory comp	94.94
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	94.93
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	94.93
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	94.92
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	94.91
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	94.9
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	94.9
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	94.88
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	94.83
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	94.82
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	94.79
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	94.79
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	94.79
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	94.78
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	94.77
1kxt_B	127	Immunoglobulin VHH fragment; alpha 8 beta 8, beta	94.77
3qjh_A	205	5C.C7 alpha chain; immunoglobulin domain, T cell r	94.76
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	94.76
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	94.75
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	94.75
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	94.7
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	94.69
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	94.69
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	94.68
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	94.68
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	94.67
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	94.67
3umt_A	256	SCFV heavy chain and light chain; stability engine	94.66
3cx5_J	127	Heavy chain (VH) of FV-fragment; complex III, elec	94.63
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	94.62
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	94.6
3u6r_H	149	Antibody 1:7 (heavy chain); IG-like domain, neutra	94.59
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	94.58
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	94.56
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	94.56
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	94.55
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	94.55
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	94.52
3r0m_A	143	Llama VHH A12; IG domain, immune system; 1.50A {La	94.5
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	94.49
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	94.48
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	94.47
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	94.45
2nw2_A	200	ELS4 TCR alpha chain; T cell receptor, immune syst	94.44
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	94.43
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	94.43
3rgv_A	200	YAE62 TCR A chain; TCR, MHC, MHC class I, immune s	94.41
1smo_A	119	Triggering receptor expressed on myeloid cells 1;	94.38
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	94.37
1kgc_D	206	T-cell receptor alpha chain; LC13 clone, immune sy	94.32
1mqk_H	127	Antibody 7E2 FV fragment, heavy chain; membrane pr	94.3
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	94.23
1jtp_A	148	Single-domain antibody; immunoglobulin, heavy chai	94.22
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	94.21
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	94.2
1zvh_A	134	Immunoglobulin heavy chain antibody variable domai	94.17
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	94.12
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	94.11
1ymm_D	207	T cell receptor alpha chain; protein-protein compl	94.08
3iy0_H	120	FAB 14, heavy domain; cryoem, neutralizing antibod	94.07
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	94.06
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	94.03
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	94.03
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	94.01
4ei6_A	208	Valpha1 XV19 type II natural killer T cell recept	93.99
2q86_A	229	Valpha14 TCR; INKT cells, TCR, glycolipid recognit	93.98
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	93.98
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	93.93
3mbe_C	229	I-AG7; T cell receptor, histocompatability antigen	93.9
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	93.89
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	93.88
1q8m_A	127	Triggering receptor expressed on myeloid cells 1;	93.85
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	93.78
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	93.76
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	93.76
3gsn_A	199	RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human	93.76
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	93.75
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	93.75
3c6l_A	185	TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus	92.81
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	93.71
2eys_A	210	NKT15; natural killer T cell receptor, immune syst	93.69
1zvy_A	136	Immunoglobulin heavy chain antibody variable DOMA;	93.67
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	93.63
2d7t_H	139	Anti polyhydroxybutyrate antibody FV, heavy chain;	93.59
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	93.57
3umt_A	256	SCFV heavy chain and light chain; stability engine	93.56
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	93.51
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	93.5
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	93.48
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	93.48
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	93.46
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	93.43
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	93.38
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	93.35
3k81_A	127	Single strand antibody VHH domain; krepa6, single	93.33
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	93.32
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	93.3
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	93.29
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	93.29
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	93.25
3v0a_C	152	Llama antibody F12; botulinum neurotoxin, toxin, n	93.21
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	93.17
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	93.16
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	93.16
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	93.13
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	93.08
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	93.0
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	92.95
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	92.93
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	92.91
3k74_B	115	Nanobody; immunoglobulin, antibiotic resista metho	92.91
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	92.91
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	92.84
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	92.83
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	92.81
3nn8_A	122	Engineered SCFV, heavy chain; beta barrel, antibod	92.79
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	92.77
3tjh_C	226	42F3 alpha; IG MHC, antigen recognition, TCR-PMHC,	92.74
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	92.72
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	92.71
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	92.69
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	92.68
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	92.65
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	92.6
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	92.52
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	92.49
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	92.41
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	92.35
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	92.32
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	92.3
3lh2_H	137	FV 4E10 heavy chain; epitope-scaffold, immune syst	92.3
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	92.29
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	92.22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	92.14
3eak_A	137	NBBCII10-FGLA; antibody, nanobody, humanization, V	92.05
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	92.05
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	92.01
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	91.97
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	91.89
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	91.89
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	91.77
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	91.76
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	91.61
3jts_B	119	Beta-2-microglobulin; alpha helix, beta sheet, bet	91.58
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	91.46
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	91.45
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	91.44

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=97.94  E-value=9.1e-06  Score=49.98  Aligned_cols=42  Identities=12%  Similarity=0.186  Sum_probs=32.3

Q ss_pred             CCCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           35 PDISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        35 g~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      |+-+.|+.+++.+|+.|.|.|.+.-+.+. ..+.|+|.|++.+
T Consensus         1 G~l~~p~~vtv~~G~~v~L~C~v~~~~~~-~~~~V~W~k~~~~   42 (218)
T 4frw_A            1 GELETSDVVTVVLGQDAKLPCFYRGDSGE-QVGQVAWARVDAG   42 (218)
T ss_dssp             CCEECCSEEEEETTSCEEECCEECCCTTC-EEEEEEEEEECSS
T ss_pred             CeEeCCCeEEEEcCCCEEEEEEEEcCCCC-CccEEEEEECCCC
Confidence            45578999999999999999999755222 2245899998754

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=97.93  E-value=7.3e-06  Score=51.57  Aligned_cols=45  Identities=22%  Similarity=0.295  Sum_probs=32.1

Q ss_pred             cCCCCCCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           31 KGVSPDISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        31 sg~~g~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      +|.......+..++|.+|++|.|+|.+..+ ..+-.+.|.|.|++.
T Consensus         3 sg~~sVt~~~~~v~g~vG~~v~L~C~~~~~-~~~~~~~V~W~k~~~   47 (125)
T 4gos_A            3 SGRHSITVTTVASAGNIGEDGILSCTFEPD-IKLSDIVIQWLKEGV   47 (125)
T ss_dssp             ---CCSCEEEECEEEETTSCEEEEEEECCC-SCGGGCEEEEEETTC
T ss_pred             ccCeEEEccCceEEEeCCCCEEEEEEEcCC-cccCcEEEEEEEecc
Confidence            344445566777889999999999999744 344457799999753

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=97.86  E-value=1.5e-05  Score=48.24  Aligned_cols=37  Identities=24%  Similarity=0.353  Sum_probs=28.7

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      +++...++|..||.|+|.|.+.-|    .|- ++|.|+|.+-
T Consensus        10 p~~~~~v~~~~g~~v~l~C~v~~p----~~~-v~W~k~g~~i   46 (91)
T 2lvc_A           10 PREHVFVHAITSECVMLACEVDRE----DAP-VRWYKDGQEV   46 (91)
T ss_dssp             CCSCEEEECCTTCCEEEEEECSCT----TSC-CEEEETTSCC
T ss_pred             cCCCeEEEEECCCcEEEEEEECCC----CcE-EEEEECCEEe
Confidence            455667889999999999998543    333 7999998753

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=97.86  E-value=1.8e-05  Score=48.90  Aligned_cols=41  Identities=15%  Similarity=0.252  Sum_probs=32.0

Q ss_pred             CCCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           35 PDISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        35 g~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      |+-+.|..++|.+|++|.|.|.+..+.+..+ +-|.|.|+..
T Consensus         2 G~v~~p~~vtv~~G~~v~L~C~~~~~~~~~~-~~V~W~k~~~   42 (123)
T 4gjt_B            2 GELETSDVVTVVLGQDAKLPCFYRGDSGEQV-GQVAWARVDA   42 (123)
T ss_dssp             CCEECCSEEECCTTSEEEECCEECCCTTCCE-EEEEEEECCC
T ss_pred             CcEEcCCEEEEEcCCCEEEEEEEeCCccCce-eEEEEEEcCC
Confidence            4456788999999999999999986644444 4579999753

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.79  E-value=1.5e-05  Score=47.12  Aligned_cols=34  Identities=32%  Similarity=0.534  Sum_probs=28.6

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|..+++..|+.|.|.|.+.   +.|.|  ++|.|+|..
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~---~~~~~--v~W~k~g~~   47 (106)
T 2dlt_A           14 DIADLTVKAAEQAVFKCEVS---DEKVT--GKWYKNGVE   47 (106)
T ss_dssp             CCCCEEEESSCCEECCCEES---CSSCE--EEEEESSCB
T ss_pred             CCCCeEEeCCCeEEEEEEEc---CCCcc--eEEEcCCEE
Confidence            56668899999999999997   55666  999999875

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=97.79  E-value=2.2e-05  Score=48.50  Aligned_cols=37  Identities=16%  Similarity=0.225  Sum_probs=27.9

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      -|..++|.+|++|.|.|.+.-+.+. -...|+|.|++.
T Consensus         7 vp~~V~~~~G~~v~L~C~~~~~~~~-~~~~V~W~k~~~   43 (225)
T 4fmk_A            7 VLPEVRGRLGGTVELPCHLLPPTTE-RVSQVTWQRLDG   43 (225)
T ss_dssp             CCSEEEEETTSCEEECCEECSSCCC-EEEEEEEECTTS
T ss_pred             eCCEEEEecCCCEEEEEEEECCCCC-ceeEEEEEECCC
Confidence            4667899999999999999765222 124589999864

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=97.69  E-value=5.2e-05  Score=43.96  Aligned_cols=40  Identities=15%  Similarity=0.297  Sum_probs=31.2

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      .+.|..+++..|+.|.|.|.+..+....-++.+.|.|++.
T Consensus         9 ~~~~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~   48 (126)
T 1eaj_A            9 TTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPA   48 (126)
T ss_dssp             SSSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEET
T ss_pred             ECCCceEEEEeCCCEEEEEEEecCCCCCCceEEEEEEeCC
Confidence            5677889999999999999997653322246799999864

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.67  E-value=2.6e-05  Score=47.05  Aligned_cols=38  Identities=18%  Similarity=0.262  Sum_probs=30.5

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .+.|+.+++..|+.|.|.|.+.   +.|.|..++|.|+|.+
T Consensus        12 ~~~~~~~~v~~G~~v~l~C~v~---~~~~~~~v~W~k~g~~   49 (104)
T 2eny_A           12 TKRLKTMEVLEGESCSFECVLS---HESASDPAMWTVGGKT   49 (104)
T ss_dssp             SBCCCCEEEESSCCEEEEEECS---SCCCSSCBCCBSSSSB
T ss_pred             EecCCCcEEcCCCcEEEEEEEc---CCCCCceeEEEECCEE
Confidence            3467778999999999999986   3455556899999875

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=97.67  E-value=5.6e-05  Score=43.89  Aligned_cols=38  Identities=21%  Similarity=0.441  Sum_probs=28.7

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCC-ceEEEeeeccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPV-PYVLQWEKKIV   76 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~Pi-PYVvqW~KdG~   76 (80)
                      .|..+++..|+.|.|.|.+..+...+- .+.+.|.|++.
T Consensus         6 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~   44 (118)
T 3udw_C            6 APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGE   44 (118)
T ss_dssp             CCSEEEEETTSCEEECCEEECCTTCCCEEEEEEEEETTC
T ss_pred             CCCeEEEeeCCcEEEEEEeECCCCCCCceEEEEEEEcCC
Confidence            355589999999999999976543333 34699999853

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=97.67  E-value=2.2e-05  Score=50.21  Aligned_cols=35  Identities=17%  Similarity=0.418  Sum_probs=28.0

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .+.|..+++..|+.|.|.|.+.-+    ++..+.|.|+.
T Consensus        28 ~~~p~~~~v~~G~~v~L~C~~~~~----~~~~v~W~k~~   62 (237)
T 3sob_L           28 TQSPSSLSASVGDRVTITCRASQD----VSTAVAWYQQK   62 (237)
T ss_dssp             EEECSEEEEETTCCEEEEEEESSC----CTTCEEEEEEC
T ss_pred             EeCCCeEEEeCCCcEEEEEecCCC----CCceEEEEEEC
Confidence            445888999999999999998754    35569998853

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=97.66  E-value=3.5e-05  Score=46.56  Aligned_cols=40  Identities=20%  Similarity=0.360  Sum_probs=31.4

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .+.|..+++..|+.|.|.|.+..|.+.+. +.+.|.|++..
T Consensus         8 ~~~~~~v~v~~G~~v~L~C~~~~~~~~~~-~~v~W~k~~~~   47 (135)
T 1xt5_A            8 RTTHTEVEVHAGGTVELPCSYQLANDTQP-PVISWLKGASP   47 (135)
T ss_dssp             ECSCSEEEEETTSCEEECCEEEEETCCSC-CEEEEEEESSS
T ss_pred             eCCCceEEEeCCCCEEEeeEeecCCCCCc-cEEEEEeeCCC
Confidence            45678899999999999999976544444 45899998643

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=97.64  E-value=5.2e-05  Score=45.16  Aligned_cols=36  Identities=22%  Similarity=0.401  Sum_probs=28.3

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCC--ceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPV--PYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~Pi--PYVvqW~KdG   75 (80)
                      -+.|..+++..|+.|.|.|.+.   +.|.  .+.++|.|++
T Consensus         8 ~~~p~~~~v~~G~~v~L~C~~~---g~p~~~~p~v~W~k~~   45 (108)
T 3cx2_A            8 VMRPQDGEVTVGGSITFSARVA---GASLLKPPVVKWFKGK   45 (108)
T ss_dssp             SBCCCCEEEETTCCEEEEEEEE---CC-CCSCCEEEEEETT
T ss_pred             EeCCCcEEEeCCCCEEEEEEEC---CCccCCCcEEEEccCC
Confidence            3478889999999999999997   5555  1458999976

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=97.61  E-value=5.7e-05  Score=50.65  Aligned_cols=35  Identities=26%  Similarity=0.190  Sum_probs=28.5

Q ss_pred             eEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           42 HITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        42 ~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      -+||.+||.|+|.|.+..-.+.|.| .|+|.|+|.+
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~-~V~W~k~g~~   36 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEI-EVSWFKLGPG   36 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTS-EEEEEEEETT
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCc-EEEEEEcCCC
Confidence            4789999999999987766666655 5899999853

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=97.61  E-value=6.1e-05  Score=48.65  Aligned_cols=33  Identities=21%  Similarity=0.358  Sum_probs=26.3

Q ss_pred             EEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        43 ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      ++|.+|+.|.|.|.++-+ ..+-++.|+|.|++.
T Consensus        14 V~v~~G~~v~L~C~v~~~-~~~~~~~V~W~k~~~   46 (226)
T 4f80_A           14 ILAMVGEDADLPCHLFPT-MSAETMELKWVSSSL   46 (226)
T ss_dssp             EEEETTSCEEEEEEEESC-CCCTTSEEEEEETTT
T ss_pred             EEEEcCCcEEEEEEEECC-CCCCceEEEEEECCC
Confidence            789999999999999743 344457899999764

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.61  E-value=0.00013  Score=42.97  Aligned_cols=37  Identities=27%  Similarity=0.451  Sum_probs=30.1

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ...|..+++..|+.|.|.|.+.   +.|.| .++|.|+|..
T Consensus        12 ~~~~~~~~v~~G~~v~l~C~~~---g~p~p-~v~W~k~g~~   48 (110)
T 2dm2_A           12 EMKLKHYKIFEGMPVTFTCRVA---GNPKP-KIYWFKDGKQ   48 (110)
T ss_dssp             SSCCCCEEEETTCCEEEEEEBC---CSSCC-EEEEECSSCB
T ss_pred             EecCcCeEEeCCCeEEEEEEEE---ecCCC-EEEEEECCEE
Confidence            4567778899999999999986   55656 4899999865

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=97.59  E-value=4.8e-05  Score=48.83  Aligned_cols=37  Identities=11%  Similarity=0.195  Sum_probs=27.7

Q ss_pred             CCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           36 DISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        36 ~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      ..+ |..+++..|+.|.|.|.+.-+.  +.|+.+.|.|++
T Consensus        23 v~~-p~~~~v~~G~~v~L~C~~~~~~--~~~~~v~W~k~~   59 (234)
T 2j6e_L           23 LTQ-PPSASGTPGQRVTISCSGSSSN--IGSNYVYWYQQL   59 (234)
T ss_dssp             CBC-CSCCCBCTTCEEEEEEECCTTT--TTTSCCEEEEEC
T ss_pred             EeC-CCcEEeeCCCcEEEEEEecCCC--CCCCeEEEEEec
Confidence            345 8899999999999999986321  224359999873

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=97.58  E-value=6.8e-05  Score=43.60  Aligned_cols=37  Identities=11%  Similarity=0.187  Sum_probs=29.4

Q ss_pred             CCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           36 DISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        36 ~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..+.|..+++..|+.|.|.|.+..|    .| -++|.|+|.+
T Consensus        11 ~~~~~~~~~v~~G~~v~l~C~~~~p----~~-~v~W~k~~~~   47 (95)
T 2k1m_A           11 FSKKPRSVEVAAGSPAVFEAETERA----GV-KVRWQRGGSD   47 (95)
T ss_dssp             CSBCCCCEEEETTSCEEEEEECSSS----SC-CCEEECSSSE
T ss_pred             eEeCCCcEEEeCCCcEEEEEEeCCC----CC-eEEEEECCEE
Confidence            3567888999999999999999443    22 3899999864

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.57  E-value=5.2e-05  Score=45.66  Aligned_cols=36  Identities=17%  Similarity=0.308  Sum_probs=28.9

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      .+.|+.+++..|+.|.|.|.+ .|.    |. ++|.|+|.+-
T Consensus        11 ~~~~~~~~v~~G~~v~l~C~v-~p~----p~-v~W~k~g~~l   46 (100)
T 2yuz_A           11 LTPLTDQTVNLGKEICLKCEI-SEN----IP-GKWTKNGLPV   46 (100)
T ss_dssp             SBCCCCEEEETTSCCCEEEEC-SSC----CC-EEEEETTEEC
T ss_pred             eccCCceEEcCCCCEEEEEEe-CCC----Ce-EEEEECCEEC
Confidence            456778899999999999999 553    32 7899998753

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=97.57  E-value=8.6e-05  Score=43.26  Aligned_cols=36  Identities=14%  Similarity=0.302  Sum_probs=29.5

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .+.|..+++..|+.|.|.|.+.   +.|.|  ++|.|+|..
T Consensus        12 ~~~~~~~~v~~G~~v~l~C~~~---~~p~~--v~W~k~~~~   47 (103)
T 2e7b_A           12 QEALKDLEVLEGGAATLRCVLS---SVAAP--VKWCYGNNV   47 (103)
T ss_dssp             TBCCCCEEEESSSCEEEEEECS---SCCCS--CEEEESSSB
T ss_pred             EecCccEEEECCCcEEEEEEEe---CCCCC--eEEEECCEE
Confidence            3467778999999999999975   45666  999999864

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.56  E-value=7.5e-05  Score=43.13  Aligned_cols=35  Identities=17%  Similarity=0.463  Sum_probs=29.3

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|..+++..|+.|.|.|.+.   +.|.|. +.|.|+|..
T Consensus        14 ~p~~~~v~~G~~~~l~C~~~---g~p~p~-v~W~~~~~~   48 (100)
T 2edj_A           14 GPANQTLAVDGTALLKCKAT---GDPLPV-ISWLKEGFT   48 (100)
T ss_dssp             CCCCEEEESSSEEEECCEEE---CSSCCE-EEEEESSSE
T ss_pred             CcCCEEEcCCCcEEEEEEEE---EcCCCE-EEEEECCEE
Confidence            56667899999999999996   677776 899999864

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=97.54  E-value=9.1e-05  Score=43.96  Aligned_cols=39  Identities=10%  Similarity=0.153  Sum_probs=29.5

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      +.|..+++..|+.|.|.|.+..+......+.++|.|++.
T Consensus         4 ~~~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~   42 (124)
T 1neu_A            4 YTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPE   42 (124)
T ss_dssp             ECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEET
T ss_pred             ecCCeEEEEeCCeEEEEeEEeCCCCCCCceEEEEEEcCC
Confidence            357788999999999999997653222345689999864

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=97.54  E-value=0.0001  Score=44.88  Aligned_cols=37  Identities=27%  Similarity=0.505  Sum_probs=31.0

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .+.|..+++..|+.|.|.|.+.   +.|.| .++|.|+|..
T Consensus        19 ~~~p~~~~v~~G~~v~L~C~~~---g~p~p-~v~W~k~~~~   55 (116)
T 2kkq_A           19 IYKPQSKKVLEGDSVKLECQIS---AIPPP-KLFWKRNNEM   55 (116)
T ss_dssp             SSCCCCEEEETTEEEEEEEEBC---CBSCC-EEEEEETTEE
T ss_pred             EeCCCcEEEeCCCcEEEEEEEe---ccCCC-EEEEEECCEE
Confidence            4578889999999999999986   66666 5999999865

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=97.52  E-value=8.2e-05  Score=44.80  Aligned_cols=36  Identities=19%  Similarity=0.358  Sum_probs=30.3

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +.|..+++..|+.|.|.|.+.   |.|.| .++|.|+|.+
T Consensus        10 ~~p~~~~v~~G~~~~l~C~~~---g~P~p-~v~W~k~g~~   45 (100)
T 3knb_A           10 ALPSDISIDEGKVLTVACAFT---GEPTP-EVTWSCGGRK   45 (100)
T ss_dssp             CCCSEEEEETTSEEEEEEEEE---EESCC-EEEEEETTEE
T ss_pred             eCCCcEEEeCCCeEEEEEEEE---EecCC-EEEEEECceE
Confidence            467889999999999999985   66666 4799999875

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=97.52  E-value=8.9e-05  Score=46.79  Aligned_cols=38  Identities=18%  Similarity=0.357  Sum_probs=30.4

Q ss_pred             CCcceEEeecCCeEEEeeecCCCC----CCCCceEEEeeeccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPG----DTPVPYVLQWEKKIV   76 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~----~~PiPYVvqW~KdG~   76 (80)
                      +.|..+++..|+.|.|.|.+..|.    +.+. ..+.|.|++.
T Consensus         5 ~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~-~~v~W~k~~~   46 (214)
T 2zg1_A            5 QVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPP-LYVYWFRDGE   46 (214)
T ss_dssp             ECCSEEEEETTCCEEECCEEECCCCCCSCCCC-EEEEEEETTC
T ss_pred             eCCcEEEEecCccEEEeeeeecCCcccCCCCc-eEEEEEecCC
Confidence            468889999999999999999873    2334 4599999865

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=97.51  E-value=7.9e-05  Score=42.73  Aligned_cols=36  Identities=14%  Similarity=0.178  Sum_probs=29.5

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..|..+++..|+.|.|.|.+.   +.|.| .++|.|+|.+
T Consensus        10 ~~p~~~~~~~G~~~~l~C~~~---g~p~p-~v~W~~~g~~   45 (100)
T 2kdg_A           10 QVPENMSIDEGRFCRMDFKVS---GLPAP-DVSWYLNGRT   45 (100)
T ss_dssp             CCCCCEEEETTCCEEEEEECE---EESCC-EEEEEETTEE
T ss_pred             eCCCCEEecCCCEEEEEEEEE---eeCCC-EEEEEECCEE
Confidence            467788999999999999986   55555 5899999864

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.51  E-value=0.00012  Score=42.89  Aligned_cols=36  Identities=11%  Similarity=0.204  Sum_probs=30.2

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .+.|..+++..|+.|.|.|.+.-   .| | .++|.|+|..
T Consensus         7 ~~~p~~~~v~~G~~v~L~C~~~g---~p-p-~i~W~k~g~~   42 (99)
T 2cr3_A            7 GVEVESFLVHPGDLLQLRCRLRD---DV-Q-SINWLRDGVQ   42 (99)
T ss_dssp             SCCEEECCBCTTSCEEEECCCCS---SC-C-EEEEEESSSB
T ss_pred             CCCCcCeEEeCCCcEEEEEEecC---CC-C-eEEEEECCEE
Confidence            56799999999999999998763   34 5 7999999865

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.50  E-value=0.00011  Score=42.75  Aligned_cols=34  Identities=24%  Similarity=0.308  Sum_probs=27.2

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|..+++..|+.|.|.|.+..|.     ..++|.|+|..
T Consensus        17 ~~~~~~v~~G~~v~L~C~~~~p~-----~~v~W~k~g~~   50 (102)
T 2eo1_A           17 AHREVQAEAGASATLSCEVAQAQ-----TEVTWYKDGKK   50 (102)
T ss_dssp             SCEEEEEETTCCEEECCBCSCSS-----SCCEEEETTEE
T ss_pred             CcccEEEeCCCcEEEEEEecCCC-----CceEEEECCEE
Confidence            45678899999999999997332     24899999865

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=97.50  E-value=8.1e-05  Score=44.58  Aligned_cols=36  Identities=19%  Similarity=0.240  Sum_probs=28.3

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      +.|+.+++..|+.|.|.|.+.-|.    | -++|.|+|.+-
T Consensus        10 ~~~~~~~v~~G~~v~l~C~v~~~~----~-~v~W~k~g~~i   45 (93)
T 1waa_A           10 KPLYGVEVFVGETAHFEIELSEPD----V-HGQWKLKGQPL   45 (93)
T ss_dssp             ECCCCEEEETTSCEEEEEEESSSS----C-CCEEEETTEEC
T ss_pred             ccCcceEEeCCCCEEEEEEECCCC----C-eEEEEECCEEC
Confidence            356678899999999999997542    3 38999998753

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.49  E-value=0.00016  Score=42.13  Aligned_cols=36  Identities=17%  Similarity=0.498  Sum_probs=28.7

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ...|..+++..|+.|.|.|.+..|    .| .++|.|+|..
T Consensus        12 ~~~~~~~~v~~G~~v~l~C~~~~p----~~-~v~W~k~~~~   47 (103)
T 2dku_A           12 TEELTNLQVEEKGTAVFTCKTEHP----AA-TVTWRKGLLE   47 (103)
T ss_dssp             SSCCCCEEEETTSEEEEEEECSSC----CS-CCEEEESSCB
T ss_pred             EecCCcEEEeCCCcEEEEEEeCCC----CC-eEEEEeCCEE
Confidence            456778899999999999996443    44 5899999865

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.48  E-value=5.8e-05  Score=45.42  Aligned_cols=35  Identities=14%  Similarity=0.307  Sum_probs=28.6

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|..+++..|+.|.|.|.+.   +.|.|. ++|.|+|.+
T Consensus        19 ~~~~~~v~~G~~v~l~C~~~---g~p~p~-v~W~k~g~~   53 (115)
T 2cr6_A           19 DLEDVDVQEGSSATFRCRIS---PANYEP-VHWFLDKTP   53 (115)
T ss_dssp             CCCEEEEETTSCEECCCEEE---STTCCS-CEEEESSCE
T ss_pred             cCccEEEeCCCcEEEEEEEc---CCCCCc-cEEEECCEE
Confidence            56778899999999999997   455554 799999864

>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B*

Probab=97.46  E-value=0.00017  Score=44.05  Aligned_cols=44  Identities=18%  Similarity=0.274  Sum_probs=33.1

Q ss_pred             cCCCCCCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           31 KGVSPDISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        31 sg~~g~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      +|+.- -..|..+++..|++|.|.|.+..+......+.+.|.|+.
T Consensus         6 ~~~~~-v~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~   49 (120)
T 3noi_A            6 QGALW-VSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDE   49 (120)
T ss_dssp             CCBCC-EECCSEEEEETTSCEEECCEECCCTTSCCCEEEEEEESS
T ss_pred             eEEEE-EcCCCEEEEEcCCCEEEEeeecCCCCCCceeEEEEEecc
Confidence            44443 345788999999999999999877533334679999986

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=97.45  E-value=0.00012  Score=42.01  Aligned_cols=36  Identities=22%  Similarity=0.487  Sum_probs=29.8

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..|...++..|+.|.|.|.+.   +.|.| .++|.|+|.+
T Consensus         8 ~~p~~~~v~~G~~~~l~C~~~---g~p~p-~i~W~~~~~~   43 (91)
T 3bfo_A            8 VEPTSQKLMPGSTLVLQCVAV---GSPIP-HYQWFKNELP   43 (91)
T ss_dssp             ECCCCEEECTTSCEEEECEEE---CSSCC-EEEEEETTEE
T ss_pred             ECCCccEecCCCcEEEEEEec---cCCCC-EEEEEcCCee
Confidence            467778899999999999975   56666 6899999865

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.43  E-value=0.00023  Score=42.50  Aligned_cols=37  Identities=27%  Similarity=0.492  Sum_probs=30.1

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ...|..+++..|+.|.|.|.+.   +.|.|. ++|.|+|..
T Consensus        12 ~~~p~~~~v~~G~~v~l~C~~~---g~p~p~-i~W~k~g~~   48 (118)
T 2eo9_A           12 RQGPVNQTVAVDGTFVLSCVAT---GSPVPT-ILWRKDGVL   48 (118)
T ss_dssp             SBCCCCEEEETTCEEEEECBCC---CSSCCE-EEEEESSSB
T ss_pred             EcCCCCEEEcCCCeEEEEEEEE---ecCCCE-EEEEECCEE
Confidence            4567788999999999999994   556654 899999864

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=97.42  E-value=8.6e-05  Score=42.49  Aligned_cols=36  Identities=28%  Similarity=0.310  Sum_probs=29.2

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +.|..+++..|+.|.|.|.+.   +.|.| .++|.|+|.+
T Consensus        10 ~~~~~~~v~~G~~v~l~C~~~---g~p~p-~v~W~k~g~~   45 (99)
T 1g1c_A           10 ERIQSQTVGQGSDAHFRVRVV---GKPDP-ECEWYKNGVK   45 (99)
T ss_dssp             ECCCCEEEETTSCEEEEEEEE---EESCC-EEEEEETTEE
T ss_pred             ecCcceEEcCCCcEEEEEEEE---EeCCC-EEEEEECCEE
Confidence            356678899999999999996   55655 4899999865

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=97.42  E-value=5.8e-05  Score=44.92  Aligned_cols=35  Identities=23%  Similarity=0.537  Sum_probs=29.5

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|..+++..|+.|.|.|.+.   +.|.|. +.|.|+|.+
T Consensus        15 ~p~~~~v~~G~~v~L~C~~~---g~P~p~-v~W~k~~~~   49 (117)
T 2v9t_A           15 HPSDLIVSKGEPATLNCKAE---GRPTPT-IEWYKGGER   49 (117)
T ss_dssp             CCCCEEECTTCCEEECCEEE---EESCCE-EEEEETTEE
T ss_pred             CCCCEEEcCCCcEEEEEECC---ccCCCe-EEEEECCEe
Confidence            56778899999999999984   677776 899999864

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=97.40  E-value=8.9e-05  Score=48.94  Aligned_cols=39  Identities=15%  Similarity=0.245  Sum_probs=27.9

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCC-CCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPG-DTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~-~~PiPYVvqW~KdG   75 (80)
                      .+.|..+++..|+.|.|.|.+.-.. +..-+..+.|.|++
T Consensus        38 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~   77 (252)
T 3bkj_L           38 TQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQR   77 (252)
T ss_dssp             EEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEEC
T ss_pred             EeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEEC
Confidence            4468899999999999999985321 10003568999975

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=97.39  E-value=9e-05  Score=45.38  Aligned_cols=35  Identities=23%  Similarity=0.384  Sum_probs=29.2

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|..+++..|+.|.|.|.+.   |.|.|- ++|.|+|.+
T Consensus        19 ~p~~~~v~~G~~~~l~C~~~---G~P~p~-v~W~k~g~~   53 (107)
T 3knb_B           19 FPRPVRVVSGAEAELKCVVL---GEPPPV-VVWEKGGQQ   53 (107)
T ss_dssp             CCCCEEEETTSCEEEEEEEE---EESCCE-EEEEETTEE
T ss_pred             CCCcEEEeCCCcEEEEEEEE---EecCCE-EEEEECccc
Confidence            56678899999999999986   667774 799999875

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.39  E-value=0.0002  Score=42.13  Aligned_cols=33  Identities=27%  Similarity=0.393  Sum_probs=25.6

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ...+++..|+.|.|.|.+..|.    | -++|.|+|.+
T Consensus        20 ~~~~~~~~G~~v~L~C~~~~p~----~-~v~W~k~g~~   52 (113)
T 2cpc_A           20 KVYVAAVRLERVVLTCELCRPW----A-EVRWTKDGEE   52 (113)
T ss_dssp             CEEEEEETTCCEEEEEEESCTT----C-CCEEEETTEE
T ss_pred             ceeEEEEcCCeEEEEEEecCCC----C-eEEEEECCEE
Confidence            3347889999999999997442    2 3899999865

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=97.38  E-value=0.00017  Score=41.43  Aligned_cols=33  Identities=15%  Similarity=0.165  Sum_probs=28.8

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|..++++.|+.|.|.|.+.   |.|.|. ++|.|+|
T Consensus         8 ~~~~~~v~~G~~~~l~C~~~---g~P~p~-i~W~k~~   40 (93)
T 1wit_A            8 ASRKIKIKAGFTHNLEVDFI---GAPDPT-ATWTVGD   40 (93)
T ss_dssp             CCCEEEECTTBCCEEEEEEE---CCSSCE-EEEECST
T ss_pred             CCCceEEeCCCEEEEEEEEE---EcCCCE-EEEEECC
Confidence            46678899999999999986   778885 7999998

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=97.38  E-value=0.0002  Score=42.52  Aligned_cols=37  Identities=24%  Similarity=0.110  Sum_probs=30.0

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ...|+.++++.|+.|.|.|.+.   +.|.|. ++|.|+|.+
T Consensus        11 ~~~~~~~~v~~G~~v~l~C~~~---g~p~p~-i~W~k~~~~   47 (114)
T 2cqv_A           11 IQFPEDQKVRAGESVELFGKVT---GTQPIT-CTWMKFRKQ   47 (114)
T ss_dssp             SCCCCSEEEETTCCEEEEEEEE---SSSSCE-EEEEESSSB
T ss_pred             EeCCCCeEEeCCCeEEEEEEEE---cCCCCE-EEEEECCEE
Confidence            3467778899999999999997   556554 789999865

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.37  E-value=0.00019  Score=41.85  Aligned_cols=30  Identities=30%  Similarity=0.494  Sum_probs=25.6

Q ss_pred             EEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        43 ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +++..|+.|.|.|.+.   +.|.|  ++|.|+|.+
T Consensus        20 ~~v~~G~~v~l~C~~~---~~p~~--v~W~k~g~~   49 (104)
T 2e6p_A           20 LTFTTSERVVLTCELS---RVDFP--ATWYKDGQK   49 (104)
T ss_dssp             EEEESSSCEECCEECS---STTCC--CEEEETTEE
T ss_pred             EEEeCCCcEEEEEEec---CCCCc--cEEeeCCEE
Confidence            8899999999999874   55667  699999865

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=97.37  E-value=0.00014  Score=43.27  Aligned_cols=34  Identities=12%  Similarity=0.133  Sum_probs=26.7

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      ...+++..|+.|.|.|.+.-    |.|- |+|.|+|.+-
T Consensus         3 lt~v~~~~G~~v~l~C~vs~----p~p~-v~W~k~g~~l   36 (84)
T 2lu7_A            3 MTRVRSTPGGDLELVVHLSG----PGGP-VRWYKDGERL   36 (84)
T ss_dssp             CCCEEECTTSCEEEECCCSC----CSTT-CEEEETTEEC
T ss_pred             CeEEEEecCCCEEEEEEECC----CCcE-EEEEECCEEc
Confidence            35688999999999999853    4443 7999999753

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=97.36  E-value=0.00011  Score=42.19  Aligned_cols=36  Identities=19%  Similarity=0.394  Sum_probs=29.3

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .++..+++..|+.|.|.|.+.   +.|.|. +.|.|+|.+
T Consensus        13 ~~~~~~~v~~G~~v~l~C~~~---g~p~p~-v~W~~~~~~   48 (100)
T 3caf_A           13 MEKRLHAVPAANTVKFRCPAG---GNPMPT-MRWLKNGKE   48 (100)
T ss_dssp             TSCCEEEECTTCCEEEECCEE---EESCCE-EEEEETTEE
T ss_pred             ccccEEEecCCCEEEEEEEcc---ccCCCE-EEEEECCEE
Confidence            446778899999999999984   566666 899999864

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=97.35  E-value=0.0002  Score=46.00  Aligned_cols=36  Identities=31%  Similarity=0.445  Sum_probs=29.7

Q ss_pred             CCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           36 DISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        36 ~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +++++++..+..|+.|.|.|.+.-    |.|  ++|.|+|.+
T Consensus         2 ~~~~~~~~v~~~G~~v~L~C~~~~----~~~--i~W~k~g~~   37 (186)
T 1jbj_A            2 DAENIEYKVSISGTSVELTCPLDS----DEN--LKWEKNGQE   37 (186)
T ss_dssp             CSCCCCCEEEEETTEEEEECSSCC----CTT--CEEEETTEE
T ss_pred             CccceEEEEEeCCcEEEEEEeCCC----CCc--eEEEECCEE
Confidence            467888888999999999999862    334  899999865

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=97.35  E-value=0.00017  Score=48.59  Aligned_cols=40  Identities=20%  Similarity=0.405  Sum_probs=30.6

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCC-CceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTP-VPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~P-iPYVvqW~KdG~~   77 (80)
                      +.|..++|.+|+.|.|.|.+.-|.... --+.|.|.|+|.+
T Consensus         5 ~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~   45 (313)
T 4fqp_A            5 QAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGES   45 (313)
T ss_dssp             ECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSS
T ss_pred             cCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCC
Confidence            468899999999999999998763211 1235899999864

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=97.33  E-value=0.00019  Score=41.61  Aligned_cols=36  Identities=14%  Similarity=0.323  Sum_probs=29.2

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ...|..+++..|+.|.|.|.+.   +.| | .++|.|+|..
T Consensus        13 ~~~~~~~~v~~G~~v~l~C~~~---g~p-p-~i~W~k~g~~   48 (95)
T 2ckn_A           13 PVEVESLLVHPGDLLQLRCRLR---DDV-Q-SINWLRDGVQ   48 (95)
T ss_dssp             TTBBCCEEECTTSCEEEECCEE---SSC-C-EEEEEBTTBC
T ss_pred             EcCcceEEEcCCCeEEEEEECC---CCC-C-ceEEEECCEe
Confidence            3467788999999999999886   345 5 7899999865

>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*

Probab=97.33  E-value=0.0002  Score=43.94  Aligned_cols=39  Identities=21%  Similarity=0.293  Sum_probs=29.5

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCC---CCCceEEEeeeccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGD---TPVPYVLQWEKKIV   76 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~---~PiPYVvqW~KdG~   76 (80)
                      +.|..++|..|+.|.|+|.+..|..   ....+.+.|.|+..
T Consensus        11 q~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~   52 (132)
T 1nko_A           11 TMQSSVTVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGN   52 (132)
T ss_dssp             EECSEEEEETTCCEEECEEEECCCCTTTTTSCCEEEEEEC--
T ss_pred             eCCCEEEEcCCCeEEEEccccCCCccccCCCccEEEEEECCC
Confidence            4688899999999999999998741   12346699999754

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=97.32  E-value=0.00013  Score=42.15  Aligned_cols=36  Identities=17%  Similarity=0.249  Sum_probs=28.9

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +.|..+++..|+.|.|.|.+.   +.|.| .++|.|+|.+
T Consensus        13 ~~~~~~~v~~G~~v~l~C~~~---g~p~p-~i~W~k~~~~   48 (103)
T 3qp3_A           13 LRMRSHRVPCGQNTRFILNVQ---SKPTA-EVKWYHNGVE   48 (103)
T ss_dssp             ECCCCEEEETTCCEEEEEEEE---EESCC-EEEEEETTEE
T ss_pred             eCCcceEEeCCCeEEEEEEEE---ecCCC-EEEEEECCEE
Confidence            356667899999999999985   55666 5899999865

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=97.32  E-value=2.1e-05  Score=50.65  Aligned_cols=35  Identities=14%  Similarity=0.308  Sum_probs=20.4

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .+.|..+++..|+.|.|.|.+.-   .|.|+ +.|.|++
T Consensus        27 ~~~p~~~~v~~G~~v~L~C~~~~---~~~~~-v~W~~~~   61 (233)
T 3bqu_C           27 TQSPASLSMSIGEKVTIRCITST---DIDDD-MNWYQQK   61 (233)
T ss_dssp             EEECSBC-------CCEEEEEEE---EESSC-EEEEEEC
T ss_pred             EEcCCeEEEecCCCEEEEEecCC---cCCCe-EEEEEEC
Confidence            44588899999999999999753   34455 8998864

>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate binding, immune system; HET: SIA GAL GLC; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A* 1qfp_A 2bve_A* 1url_A*

Probab=97.31  E-value=0.00024  Score=42.78  Aligned_cols=39  Identities=18%  Similarity=0.390  Sum_probs=29.8

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCC--CCCceEEEeeeccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGD--TPVPYVLQWEKKIV   76 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~--~PiPYVvqW~KdG~   76 (80)
                      +.|..++|..|+.|.|+|.+..|.+  ..-.+.+.|.|+..
T Consensus         5 ~~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~~v~W~~~~~   45 (119)
T 1qfo_A            5 SSPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYS   45 (119)
T ss_dssp             ECCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTT
T ss_pred             EcCCEEEEecCCcEEEEEEeeCCCccCCCCCeEEEEEEcCC
Confidence            3578899999999999999998753  12235689999853

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=97.30  E-value=0.00041  Score=40.61  Aligned_cols=36  Identities=25%  Similarity=0.278  Sum_probs=28.8

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .+.|..+++..|+.|.|.|.+.-|    . ..++|.|+|..
T Consensus        11 ~~~~~~~~v~~G~~v~l~C~~~~~----~-~~v~W~k~g~~   46 (103)
T 1x44_A           11 TKQLEDTTAYCGERVELECEVSED----D-ANVKWFKNGEE   46 (103)
T ss_dssp             SBCCCCEEEETTEEEEEEEECSSS----S-CCCEEEETTEE
T ss_pred             eccCCCEEEECCCCEEEEEEecCC----C-CeEEEEECCEE
Confidence            446778899999999999999543    2 35899999865

>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}

Probab=97.29  E-value=0.00022  Score=42.97  Aligned_cols=37  Identities=22%  Similarity=0.437  Sum_probs=29.2

Q ss_pred             CCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           36 DISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        36 ~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      ..+.|..+++..|+.|.|.|.+.-.  .|. +.+.|.|++
T Consensus        10 v~q~p~~~~~~~G~~v~L~C~~~~~--~~~-~~v~W~r~~   46 (120)
T 2yz1_A           10 VTQPEKSVSVAAGDSTVLNCTLTSL--LPV-GPIKWYRGV   46 (120)
T ss_dssp             EECCSSEEEECTTCCEEECCEESCC--CSC-CCEEEEESS
T ss_pred             EECCCceEEEeCCCCEEEEeEECCC--CCC-cEEEEEcCC
Confidence            3567889999999999999998743  232 458999985

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=97.27  E-value=0.00016  Score=41.33  Aligned_cols=36  Identities=19%  Similarity=0.415  Sum_probs=28.8

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..|..+++..|+.|.|.|.+.   +.|.| .++|.|+|..
T Consensus        10 ~~~~~~~v~~G~~v~l~C~~~---g~p~p-~v~W~k~~~~   45 (99)
T 1u2h_A           10 VSLMDQSVREGQDVIMSIRVQ---GEPKP-VVSWLRNRQP   45 (99)
T ss_dssp             ECCCCEEEETTCCEEEEEEEE---EESCC-EEEEEETTEE
T ss_pred             EcCCceEecCCCEEEEEEEEE---EcCCC-EEEEEECCEE
Confidence            356667899999999999985   55555 5899999864

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.27  E-value=0.00014  Score=42.49  Aligned_cols=35  Identities=23%  Similarity=0.408  Sum_probs=29.0

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|..+++..|+.|.|.|.+.   +.|.| .++|.|+|..
T Consensus        15 ~~~~~~v~~G~~v~l~C~~~---g~p~p-~v~W~~~g~~   49 (110)
T 2dm3_A           15 APGDLTVQEGKLCRMDCKVS---GLPTP-DLSWQLDGKP   49 (110)
T ss_dssp             CCCEEEEESSSCBCCEEEEE---CSSCC-EEECBBSSSB
T ss_pred             CCCcEEEeCCCEEEEEEEEE---EcCCC-EEEEEECCEE
Confidence            56778899999999999995   55655 6899998865

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=97.27  E-value=0.0002  Score=43.32  Aligned_cols=36  Identities=17%  Similarity=0.290  Sum_probs=29.1

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      .|..++|.+|+.|.|.|.+..+....-.+.+.|.|+
T Consensus         8 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~k~   43 (128)
T 3r0n_A            8 VLPEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRP   43 (128)
T ss_dssp             CCSEEECCTTSCEEECCEEESCCTTCEEEEEEEECT
T ss_pred             cCCeEEEEcCCCEEEEEEeecCCCCCcEEEEEEEEe
Confidence            577789999999999999987643324578999996

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=97.26  E-value=0.00032  Score=40.35  Aligned_cols=37  Identities=14%  Similarity=0.324  Sum_probs=29.4

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCC-CCceEEEeeecccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDT-PVPYVLQWEKKIVK   77 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~-PiPYVvqW~KdG~~   77 (80)
                      .+.|..+++..|+.|.|.|.+.   +. |.| .+.|.|+|.+
T Consensus         5 ~~~~~~~~v~~G~~v~l~C~~~---g~~p~~-~v~W~~~~~~   42 (97)
T 2bk8_A            5 SGQIMHAVGEEGGHVKYVCKIE---NYDQST-QVTWYFGVRQ   42 (97)
T ss_dssp             ECCCCCEEECTTCCEEEEEEEE---SCCTTC-EEEEEETTEE
T ss_pred             eccCcCEEEcCCCcEEEEEEEe---ccCCCC-EEEEEECCEE
Confidence            3567789999999999999986   43 444 5899999864

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=97.23  E-value=0.00028  Score=43.33  Aligned_cols=38  Identities=16%  Similarity=0.323  Sum_probs=27.8

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      ..|..+++..|+.|.|.|.+..+.+ .-.+.+.|.|++.
T Consensus        11 ~~~~~v~~~~G~~v~L~C~~~~~~~-~~~~~v~W~~~~~   48 (139)
T 1pko_A           11 GPGHPIRALVGDEAELPCRISPGKN-ATGMEVGWYRSPF   48 (139)
T ss_dssp             CCSSCEEEETTSCEEEEEEEESCCC-CTTSEEEEEEC--
T ss_pred             CCCCCEEEEeCCCEEEeeEccCCCC-CCceEEEEEECCC
Confidence            4566789999999999999975432 2236799999864

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=97.22  E-value=0.00035  Score=40.45  Aligned_cols=37  Identities=27%  Similarity=0.476  Sum_probs=27.7

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ...|..+++..|+.|.|.|.+.   +.|.|. +.|.|+|..
T Consensus        14 ~~~~~~~~v~~G~~v~l~C~~~---g~p~p~-i~W~~~~~~   50 (108)
T 3kvq_A           14 TGNLENQTTSIGESIEVSCTAS---GNPPPQ-IMWFKDNET   50 (108)
T ss_dssp             BSCCCCEEEETTCCEEEECBCC-------CC-EEEEESSSB
T ss_pred             ecCCCCeEEeCCCeEEEEEECc---CcCCCe-EEEEECCeE
Confidence            4567788899999999999985   556664 899999865

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=97.22  E-value=0.00048  Score=40.76  Aligned_cols=35  Identities=17%  Similarity=0.329  Sum_probs=26.1

Q ss_pred             eEEeecCCeEEEeeecCC-CCCCCCceEEEeeeccc
Q psy531           42 HITALLGESVVFNCGVDF-PGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        42 ~ltA~vGe~VVlnCdvdf-P~~~PiPYVvqW~KdG~   76 (80)
                      .++|.+|+.|.|+|.+.. |....-.+.+.|.|++.
T Consensus         3 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~   38 (110)
T 1ncn_A            3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQEN   38 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTC
T ss_pred             EEEEEeCCCEEEEeEeCCCCcCCCccEEEEEEeCCC
Confidence            478999999999999974 43222345799999753

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=97.21  E-value=0.00064  Score=42.90  Aligned_cols=38  Identities=11%  Similarity=0.143  Sum_probs=28.5

Q ss_pred             CCcceEEeecCCeEEEeeecC-CCCCCCCceEEEeeecc
Q psy531           38 SNAVHITALLGESVVFNCGVD-FPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvd-fP~~~PiPYVvqW~KdG   75 (80)
                      ..|+.+++.+|+.|.|.|.+. .|...+-.+.++|.|++
T Consensus         6 ~p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~   44 (222)
T 3sbw_C            6 VPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMED   44 (222)
T ss_dssp             CSCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETT
T ss_pred             cCCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECC
Confidence            346678899999999999985 34333335679999964

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=97.20  E-value=0.00012  Score=50.27  Aligned_cols=36  Identities=22%  Similarity=0.418  Sum_probs=27.0

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCC-ceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPV-PYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~Pi-PYVvqW~KdG   75 (80)
                      -+.|..+++..|+.|.|.|.+.   +.|. ++.++|.|+.
T Consensus        26 v~~p~~~~v~~G~~v~L~C~~~---~~~~~~~~v~W~r~~   62 (291)
T 2gki_A           26 LQQSGPELVKPGASVKMSCKAS---GYTFTSYVMHWVKQK   62 (291)
T ss_dssp             EEECCCEEECTTCCEEEEEEEE---SSCGGGSCEEEEEEC
T ss_pred             EEcCCcEEecCCCCEEEEEecc---CCcccccEEEEEEEC
Confidence            3456788999999999999974   2231 3569999963

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=97.19  E-value=0.00012  Score=49.71  Aligned_cols=36  Identities=14%  Similarity=0.219  Sum_probs=27.6

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCC-CceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTP-VPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~P-iPYVvqW~KdG   75 (80)
                      -+.|..+++..|++|.|.|.+.   +.| .+..+.|.|++
T Consensus        30 ~~~p~~~~v~~G~~v~L~C~~~---g~~~~~~~v~W~r~~   66 (282)
T 1qok_A           30 LQQSGAELVRSGTSVKLSCTAS---GFNIKDSYMHWLRQG   66 (282)
T ss_dssp             EEECCCEEEETTCCEEEEEEEE---SSCGGGSCEEEEEEC
T ss_pred             EECCCCEEEeCCCeEEEEEecc---CCCCCCceEEEEEeC
Confidence            4578889999999999999974   232 23558999964

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=97.18  E-value=0.00055  Score=44.57  Aligned_cols=44  Identities=20%  Similarity=0.305  Sum_probs=30.3

Q ss_pred             CCCCCCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           32 GVSPDISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        32 g~~g~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      |.......|..+++..|+.|.|.|.+..+.+.|. ..++|.|++.
T Consensus         4 g~~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~-~~v~W~k~~~   47 (268)
T 3mj6_A            4 GLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHV-DRVDWLFSKD   47 (268)
T ss_dssp             --------CCEEEEETTCCEEECCBCCCSSCCCE-EEEEEEEESS
T ss_pred             cccccccCCCceEEecCCcEEEEEEeecCCCCce-EEEEEEEeCC
Confidence            4444556777899999999999999988766554 6689999764

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=97.17  E-value=0.00036  Score=41.93  Aligned_cols=34  Identities=12%  Similarity=0.252  Sum_probs=27.6

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .+.|..+++..|++|.|+|.+..+   + | .+.|.|+.
T Consensus         5 ~q~p~~~~v~~G~~v~L~C~~~~~---~-~-~v~W~r~~   38 (113)
T 1h5b_A            5 EQSPSALSLHEGTDSALRCNFTTT---M-R-SVQWFRQN   38 (113)
T ss_dssp             EEECSEEEEETTCCEEEEEEESSC---C-S-EEEEEEEC
T ss_pred             EECCCEEEEecCCcEEEEEEECCC---C-c-eEEEEEEC
Confidence            456888999999999999999853   2 4 48999875

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.16  E-value=0.00016  Score=41.63  Aligned_cols=35  Identities=26%  Similarity=0.481  Sum_probs=27.9

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|..+++..|+.|.|.|.+.   +.|.| .++|.|+|..
T Consensus        17 ~~~~~~v~~G~~v~l~C~~~---g~p~p-~v~W~~~g~~   51 (99)
T 2yr3_A           17 VLKDCAVIEGQDFVLQCSVR---GTPVP-RITWLLNGQP   51 (99)
T ss_dssp             CCCCEEECTTCCEEEECEEE---EESCC-CCEEEESSSB
T ss_pred             cCCCCEEeCCCeEEEEEEEe---eeCCC-eEEEEECCEE
Confidence            45567799999999999985   55555 4899999865

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=97.16  E-value=0.00044  Score=41.81  Aligned_cols=33  Identities=9%  Similarity=0.073  Sum_probs=25.8

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      |..+++..|+.|.|.|.+..|    .|- ++|.|+|.+
T Consensus        23 ~~~~~v~~G~~v~L~C~~~~p----~~~-v~W~k~g~~   55 (104)
T 1pd6_A           23 EPAYQVSKGHKIRLTVELADH----DAE-VKWLKNGQE   55 (104)
T ss_dssp             CSEEEEETTSCEEEEEECSSS----SSC-CEEEESSSE
T ss_pred             CCcEEEecCCCEEEEEEEcCC----CCE-EEEEECCEE
Confidence            344789999999999999433    333 899999865

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=97.16  E-value=0.00034  Score=41.58  Aligned_cols=35  Identities=20%  Similarity=0.353  Sum_probs=27.5

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .+.|..+++..|++|.|.|.+.-.   |.| .+.|.|+.
T Consensus         5 ~q~p~~~~~~~G~~v~L~C~~~~~---~~~-~v~W~r~~   39 (108)
T 1jhl_L            5 TQSPSYLVASPGETITINCRASKS---ISK-SLAWYQEK   39 (108)
T ss_dssp             EEECSEEEECTTSCEEEEEEESSC---CTT-CEEEEEEC
T ss_pred             eccCCeeEEcCCCCEEEEeEECCC---CCc-eEEEEEEC
Confidence            356888999999999999998742   333 48999874

>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor, IG-like domain, immune system; 1.00A {Mus musculus} PDB: 2icc_A 2ice_S* 2icf_S*

Probab=97.14  E-value=0.00078  Score=41.02  Aligned_cols=37  Identities=14%  Similarity=0.204  Sum_probs=28.9

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      -+.|..++|.+|++|.|+|.+..+.+ .-.+.+.|.|+
T Consensus         5 ~~~~~~v~~~~G~~v~L~C~~~~~~~-~~~~~v~W~~~   41 (119)
T 2pnd_A            5 LKTPESVTGTWKGDVKIQCIYDPLRG-YRQVLVKWLVR   41 (119)
T ss_dssp             CBCCSEEEEETTSCEEECCBCCCCTT-CEEEEEEEEEE
T ss_pred             ccCCceEEEEcCCcEEEEEEEcCCCC-CCceEEEEEEe
Confidence            35688899999999999999876432 23456899987

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=97.13  E-value=0.00073  Score=41.73  Aligned_cols=38  Identities=16%  Similarity=0.315  Sum_probs=30.0

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      .|+.+++..|+.|.|.|.+..+....-++.++|.|++.
T Consensus         6 ~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~   43 (214)
T 3jz7_A            6 PEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPS   43 (214)
T ss_dssp             CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEES
T ss_pred             CCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCC
Confidence            46778899999999999998764433357899999653

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=97.12  E-value=0.00016  Score=43.29  Aligned_cols=36  Identities=33%  Similarity=0.625  Sum_probs=29.4

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +.|..+++..|+.|.|.|.+.   +.|.| .+.|.|+|.+
T Consensus        19 ~~p~~~~v~~G~~v~L~C~~~---g~p~p-~v~W~k~g~~   54 (106)
T 1nct_A           19 TKPRSMTVYEGESARFSCDTD---GEPVP-TVTWLRKGQV   54 (106)
T ss_dssp             ECCCCEEESSSSCEECCEEEE---CSSCC-BCCBCSSSSC
T ss_pred             ECCCCEEEeCCCcEEEEEEEE---EcCCC-EEEEEECCEE
Confidence            477888999999999999985   45555 4899999865

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=97.10  E-value=0.00057  Score=39.35  Aligned_cols=36  Identities=22%  Similarity=0.469  Sum_probs=27.5

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      +.|..+++..|+.|.|.|.++  .+.| +..+.|.|++.
T Consensus        15 ~~~~~~~v~~G~~v~l~C~~~--~~~p-~~~v~W~k~~~   50 (98)
T 1gl4_B           15 EEQRSQSVRPGADVTFICTAK--SKSP-AYTLVWTRLHN   50 (98)
T ss_dssp             CSCCEEEECTTCCEEEEEEEE--ESSS-CCEEEEEEGGG
T ss_pred             eCCCCeEEecCCCEEEEEeCC--CCCC-CcEEEEEeCCC
Confidence            356778899999999999997  1233 34589999854

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=97.10  E-value=0.00029  Score=40.06  Aligned_cols=36  Identities=17%  Similarity=0.207  Sum_probs=28.4

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..|..+++..|+.|.|.|.+.   +.|.| .++|.|+|..
T Consensus        11 ~~~~~~~v~~G~~~~l~C~~~---g~p~p-~v~W~~~g~~   46 (99)
T 3puc_A           11 TGLQDTTVSSDSVAKFAVKAT---GEPRP-TAIWTKDGKA   46 (99)
T ss_dssp             ECCCCEEEESSSCEEEEEEEE---EESCC-EEEEEETTEE
T ss_pred             ecCccEEEeCCCcEEEEEEEE---ecCCC-EEEEEECCEE
Confidence            356678899999999999985   44555 5799999864

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=97.10  E-value=0.00043  Score=46.11  Aligned_cols=33  Identities=27%  Similarity=0.498  Sum_probs=26.0

Q ss_pred             ceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           41 VHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        41 ~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      ..++|..|+.|.|.|.++-+   +.+..|+|.|++.
T Consensus         7 p~vtv~~G~~v~L~C~v~~~---~~~~~v~W~k~~~   39 (308)
T 4fom_A            7 PHVTAVWGKNVSLKCLIEVN---ETITQISWEKIHG   39 (308)
T ss_dssp             CSCEEETTSCEEECCBCCCS---SCEEEEEEEEESS
T ss_pred             CEeEEEcCCcEEEEEEecCC---CCCcEEEEEECCC
Confidence            36889999999999998643   3456799999754

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=97.10  E-value=0.00043  Score=42.63  Aligned_cols=36  Identities=19%  Similarity=0.404  Sum_probs=28.5

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      ..|..++|.+|+.|.|.|.+..+ +.+ .+.+.|.|++
T Consensus         8 ~~~~~v~~~~G~~v~L~C~~~~~-~~~-~~~v~W~k~~   43 (117)
T 3q0h_A            8 ETTGNISAEKGGSIILQCHLSST-TAQ-VTQVNWEQQD   43 (117)
T ss_dssp             EESCCEEEETTCCEEECEEEESC-CCE-EEEEEEEETT
T ss_pred             EccCCEEEecCCCEEEEEEecCC-CCC-EEEEEEEeCC
Confidence            45667899999999999999876 332 3568999974

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=97.09  E-value=0.00054  Score=39.89  Aligned_cols=30  Identities=20%  Similarity=0.191  Sum_probs=24.3

Q ss_pred             EEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        43 ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +++..|+.|.|.|.+..    |.| .++|.|+|.+
T Consensus        18 ~~v~~G~~v~l~C~~~~----p~~-~v~W~k~g~~   47 (100)
T 2yuv_A           18 YQVDKGGRVRFVVELAD----PKL-EVKWYKNGQE   47 (100)
T ss_dssp             EEECTTEEEEEEEEESC----TTS-CEEEEESSCB
T ss_pred             cEEcCCCcEEEEEEecC----CCc-eEEEEECCEE
Confidence            57889999999999973    333 4899999875

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.08  E-value=0.00048  Score=42.59  Aligned_cols=37  Identities=19%  Similarity=0.294  Sum_probs=29.4

Q ss_pred             CCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           36 DISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        36 ~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      ..+.|..+++..|+.|.|.|.+....  + .+.+.|.|++
T Consensus        11 v~q~p~~~~v~~G~~v~L~C~~~~~~--~-~~~v~W~r~~   47 (136)
T 2d9c_A           11 VIQPEKSVSVAAGESATLRCAMTSLI--P-VGPIMWFRGA   47 (136)
T ss_dssp             EECCCSEEEEETTSCEEECCEESCCC--S-CCCCEEEETT
T ss_pred             EEecCcEEEEcCCCCEEEEEEEcCCC--C-CceEEEEeec
Confidence            35678899999999999999987532  2 3568999986

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=97.08  E-value=0.00046  Score=42.29  Aligned_cols=36  Identities=25%  Similarity=0.415  Sum_probs=29.0

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +.|..+++..|+.|.|.|.+.   +.|.|. ++|.|+|..
T Consensus        26 ~~p~~~~v~~G~~v~L~C~~~---g~P~p~-i~W~k~~~~   61 (137)
T 3qr2_A           26 QAPLSQQRWVGGSVELHCEAV---GSPVPE-IQWWFEGQG   61 (137)
T ss_dssp             ECCCCEEEETTSCEEEEEEEE---CSSCCE-EEEEEEESS
T ss_pred             cCCCCEEEeCCCCEEEEEEEe---eecCCe-EEEEECCCC
Confidence            467778899999999999874   566664 899998764

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=97.08  E-value=0.00063  Score=42.30  Aligned_cols=35  Identities=29%  Similarity=0.465  Sum_probs=29.1

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ...|++..+..|++|.|.|.++   +.| +  +.|.|+|.+
T Consensus         3 ~~~p~~~v~~~G~~v~L~C~~~---g~P-~--i~W~kdg~~   37 (82)
T 3r08_E            3 AENIEYKVSISGTSVELTCPLD---SDE-N--LKWEKNGQE   37 (82)
T ss_dssp             CCCCCCEEEEETTEEEEECSSC---CCS-S--CEEEETTEE
T ss_pred             CCCCceeEEEcCCeEEEEEECC---CCC-c--EEEEECCEE
Confidence            4578999999999999999986   344 3  899999875

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=97.07  E-value=0.00046  Score=44.13  Aligned_cols=39  Identities=23%  Similarity=0.470  Sum_probs=30.9

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..|..+++..|+.|.|.|.+.-|.+.| +..++|.|++..
T Consensus         7 ~~~~~v~v~~G~~v~L~C~~~~~~~~~-~~~v~W~~~~~~   45 (250)
T 2fbo_J            7 TTHTEVEVHAGGTVELPCSYQLANDTQ-PPVISWLKGASP   45 (250)
T ss_dssp             CSCSEEEECTTSCEEECCEEEECSCCS-CCEEEEEEEEET
T ss_pred             cCCCceEEecCCeEEEEEEeEcCCCCC-ceEEEEEeCCCC
Confidence            345678899999999999998765555 457899999854

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.07  E-value=0.00025  Score=41.05  Aligned_cols=36  Identities=25%  Similarity=0.416  Sum_probs=28.3

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      .|...+++.|+.|.|.|.+.   +.|.| .++|.|+|.+.
T Consensus        16 ~p~~~~v~~G~~v~l~C~~~---g~p~~-~v~W~k~~~~~   51 (96)
T 2ens_A           16 EPEGGAVAPGGTVTLTCEVP---AQPSP-QIHWMKDGVPL   51 (96)
T ss_dssp             ESTTSEECTTCEEEEECCCS---SCSSC-CCCCEESSSBC
T ss_pred             CCCCCEEcCCCeEEEEEEEc---cCCCC-EEEEEECCEEC
Confidence            55566789999999999984   55555 57999998753

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=97.07  E-value=0.00058  Score=41.97  Aligned_cols=37  Identities=30%  Similarity=0.541  Sum_probs=29.6

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ...|..+++..|+.|.|.|.+.   +.|.| .++|.|+|..
T Consensus         6 ~~~p~~~~v~~G~~v~l~C~~~---~~p~~-~v~W~k~~~~   42 (182)
T 1rhf_A            6 MGAPVKLTVSQGQPVKLNCSVE---GMEEP-DIQWVKDGAV   42 (182)
T ss_dssp             -CCCEEEEEETTCCEEEEEEEE---SCSSC-CEEEEETTEE
T ss_pred             EeCCcceEEeCCCcEEEEEEEe---CCCCC-eEEEEECCee
Confidence            4578889999999999999997   34444 5899999864

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=97.06  E-value=0.0007  Score=38.92  Aligned_cols=34  Identities=26%  Similarity=0.411  Sum_probs=27.1

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +.|+.+++..|+.|.|.|.+.-   .  | .+.|.|+|.+
T Consensus         6 ~~p~~~~v~~G~~~~l~C~~~~---~--p-~v~W~k~g~~   39 (95)
T 4hwu_A            6 SQPEAYVVAPGESLELQCMLKD---A--A-VISWTKDGVH   39 (95)
T ss_dssp             --CEEEEECTTSCEEEECCCCT---T--C-EEEEEETTEE
T ss_pred             cCCCcEEECCCCEEEEEEEeCC---C--C-EEEEEECCEE
Confidence            4688899999999999999872   2  3 6899999865

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.05  E-value=0.00035  Score=40.59  Aligned_cols=34  Identities=18%  Similarity=0.206  Sum_probs=27.1

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|..+++..|+.|.|.|.+.-    |.| -++|.|+|..
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~~----~~~-~v~W~k~g~~   47 (103)
T 2edf_A           14 PLEDQWVAPGEDVELRCELSR----AGT-PVHWLKDRKA   47 (103)
T ss_dssp             CCCCEEECTTSCEEECCEESS----SSC-CCCEEESSCB
T ss_pred             cCCccEEcCCCCEEEEEEEeC----CCC-cEEEEECCEE
Confidence            556678999999999999983    333 3899999865

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=97.03  E-value=0.00016  Score=43.55  Aligned_cols=35  Identities=29%  Similarity=0.375  Sum_probs=29.9

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      |..+++..|+.|.|.|.++   +.|.|..++|.|+|..
T Consensus        20 ~~~~~~~~G~~v~l~C~~~---g~P~p~~i~W~~~~~~   54 (122)
T 2cry_A           20 TQTQHALHGEKGQIKCFIR---STPPPDRIAWSWKENV   54 (122)
T ss_dssp             ECCCCCCTTSCCCCCEEEC---CSSCCSEEEEESSSCE
T ss_pred             CCeEEEecCCCEEEEEEEe---ecCCCcEeEEEECCEE
Confidence            5566789999999999997   7888887899999764

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.03  E-value=0.00047  Score=41.24  Aligned_cols=34  Identities=18%  Similarity=0.274  Sum_probs=27.9

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +..++++.|+.+.|.|.+.   +.|.|. ++|.|+|..
T Consensus        31 ~~~~~v~~G~~~~l~C~~~---g~P~p~-i~W~k~g~~   64 (118)
T 2e7c_A           31 RQTYIRKVGEQLNLVVPFQ---GKPRPQ-VVWTKGGAP   64 (118)
T ss_dssp             SSCEEEESSSCEEEEEEEE---EESCCE-EEEEETTEE
T ss_pred             CCCEEEECCCEEEEEEEEc---cCCCCE-EEEEECCEE
Confidence            4567899999999999875   667775 799999865

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=97.02  E-value=0.00096  Score=39.32  Aligned_cols=34  Identities=15%  Similarity=0.317  Sum_probs=26.7

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|..+++..|++|.|.|.+..+.+.   +.+.|.|+.
T Consensus         3 ~~~~v~~~~G~~v~L~C~~~~~~~~---~~v~W~k~~   36 (116)
T 2or8_A            3 SYVEVKGVVGHPVTLPCTYSTYRGI---TTTCWGRGQ   36 (116)
T ss_dssp             CCEEEEEETTSCEEECCBCCCTTCC---CCEEEEESC
T ss_pred             CcceEEEEeCCcEEEEEEeeCCCCC---cEEEEEEEC
Confidence            3577899999999999999764332   348999986

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=97.01  E-value=0.00042  Score=41.28  Aligned_cols=35  Identities=17%  Similarity=0.245  Sum_probs=28.1

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |.|..+++..|++|.|.|.+.-..   ..+.+.|.|+.
T Consensus         1 q~p~~v~~~~G~~v~L~C~~~~~~---~~~~v~W~r~~   35 (110)
T 2q87_A            1 SKARTVAGPVGGSLSVQCPYEKEH---RTLNKYWCRPP   35 (110)
T ss_dssp             CEEEEEEECTTSCEEEEEECCGGG---TTSEEEEESCC
T ss_pred             CCCcEEEEeCCCcEEEEeEecCCc---CCceEEEEecC
Confidence            458889999999999999987532   23579999975

>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A

Probab=96.99  E-value=0.00075  Score=40.56  Aligned_cols=35  Identities=9%  Similarity=0.109  Sum_probs=28.2

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .+.|..+++..|++|.|+|.+...    ..+.+.|.|+.
T Consensus         4 ~q~p~~~~~~~G~~v~L~C~~~~~----~~~~v~W~rq~   38 (112)
T 2z35_A            4 TQTGGQVALSEEDFLTIHCNYSAS----GYPALFWYVQY   38 (112)
T ss_dssp             ECSCSEEEEETTCCEEECCEEECS----SCCEEEEEEEC
T ss_pred             EeCCCcEEEcCCCCEEEEEEECCC----CCCeEEEEEEC
Confidence            467889999999999999998754    23458999874

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=96.99  E-value=0.0006  Score=41.22  Aligned_cols=37  Identities=19%  Similarity=0.237  Sum_probs=28.3

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .+.|..+++..|+.|.|.|.+.... .|. +.+.|.|+.
T Consensus         4 ~q~p~~~~~~~G~~v~L~C~~~~~~-~~~-~~v~W~r~~   40 (111)
T 2ywz_A            4 DQTPRTITKETGESLTIKCVLKDHS-CGL-SSTTWYRTQ   40 (111)
T ss_dssp             EEECSEEEECTTCCEEEEEEEESCS-SCC-CEEEEEEEE
T ss_pred             EECCCcEEEccCCCEEEEeEECCCC-CCC-CEEEEEEeC
Confidence            3568899999999999999996432 133 348999974

>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta barrel, immunoglobulin fold, IGV domain, TIM, glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB: 3bi9_X* 3bib_X*

Probab=96.98  E-value=0.001  Score=40.00  Aligned_cols=35  Identities=20%  Similarity=0.303  Sum_probs=27.5

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|..+++..|+.|.|+|.+..+...  .|-+.|.|+.
T Consensus         2 s~~~v~~~~G~~vtL~C~~~~~~~~--~~~v~W~r~~   36 (116)
T 3bia_X            2 SEDTIIGFLGQPVTLPCHYLSWSQS--RNSMCWGKGS   36 (116)
T ss_dssp             -CEEEEEETTSCEEECCBCTTCCTT--TCEEEEEESS
T ss_pred             CccEEEEeeCCcEEEEEEeeCCCCC--eEEEEEeeec
Confidence            3678999999999999999854222  4679999986

>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A*

Probab=96.97  E-value=0.001  Score=40.28  Aligned_cols=36  Identities=19%  Similarity=0.427  Sum_probs=28.7

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|.|..+++..|++|.|+|.+....  + .+.+.|.|+.
T Consensus         4 ~q~p~~~~~~~G~~vtL~C~~~~~~--~-~~~v~W~rq~   39 (116)
T 1fo0_A            4 TQTQTSISVMEKTTVTMDCVYETQD--S-SYFLFWYKQT   39 (116)
T ss_dssp             ECCCCEEEEETTCCEEECCEECCCC--S-SCEEEEEEEC
T ss_pred             CcCCCcEEEecCCcEEEEeEecCCC--C-CeEEEEEEeC
Confidence            4678999999999999999987542  2 3459999874

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=96.95  E-value=0.00083  Score=42.71  Aligned_cols=36  Identities=22%  Similarity=0.446  Sum_probs=29.4

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..|..+++..|+.|.|.|.+.   +.|.| .++|.|+|..
T Consensus        11 ~~p~~~~v~~G~~v~l~C~~~---g~p~~-~v~W~~~~~~   46 (212)
T 2yd1_A           11 RKPQNQGVRVGGVASFYCAAR---GDPPP-SIVWRKNGKK   46 (212)
T ss_dssp             ECCCCEEEETTSCEEEEEEEE---CSSCC-EEEEEETTEE
T ss_pred             cCCCceEEecCCEEEEEEEEc---cCCCC-eEEEEECCEE
Confidence            367778899999999999986   45555 7999999865

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=96.95  E-value=0.00077  Score=43.17  Aligned_cols=36  Identities=17%  Similarity=0.314  Sum_probs=27.3

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      +++.+.|..|+.|.|.|.. +|.+.|+ .-++|.|+|.
T Consensus         2 ~~~~v~~~~G~~v~L~c~~-~~~~~~~-~~i~W~k~~~   37 (176)
T 1hng_A            2 DSGTVWGALGHGINLNIPN-FQMTDDI-DEVRWERGST   37 (176)
T ss_dssp             CEEEEEEETTSCEEECCTT-CCCCTTE-EEEEEEETTE
T ss_pred             CceEEEEEcCCcEEEcCCC-CCccccc-ccEEEEeCCc
Confidence            4677889999999999952 4434444 4689999984

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=96.95  E-value=0.00068  Score=38.41  Aligned_cols=38  Identities=18%  Similarity=0.424  Sum_probs=28.3

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..|...++..|+.|.|.|.+.-. ..| +..++|.|+|..
T Consensus        15 ~~p~~~~v~~G~~v~L~C~~~~~-~~~-~~~i~W~k~~~~   52 (112)
T 3so5_A           15 VQPETQSAIXGSDVSFTCSAASS-SDS-PMTFAWXXDNEA   52 (112)
T ss_dssp             ECCCCEEECTTCCEEEEEEEEES-CCC-CCEEEEEETTEE
T ss_pred             eCCCCcEEECCCCEEEEEEEecC-CCC-CEEEEEccCCcc
Confidence            45777889999999999998732 122 244799999865

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=96.95  E-value=0.00048  Score=41.24  Aligned_cols=36  Identities=17%  Similarity=0.333  Sum_probs=28.3

Q ss_pred             CCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           36 DISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        36 ~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      ..+.|..+++..|++|.|.|.+...   +. +.+.|.|+.
T Consensus         6 v~q~p~~~~v~~G~~v~L~C~~~~~---~~-~~v~W~r~~   41 (109)
T 2q20_A            6 MTQSPSSLSASVGDRVTITCQASQD---IS-NYLNWYQQK   41 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSC---CT-TCEEEEEEC
T ss_pred             EEeeCCEEEecCCCcEEEEEeeccC---CC-CcEEEEEEC
Confidence            3456889999999999999998743   22 348999975

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=96.95  E-value=0.00061  Score=44.86  Aligned_cols=33  Identities=15%  Similarity=0.273  Sum_probs=27.4

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      +.|..+++..|+.|.|.|.+..|     .+.+.|.|++
T Consensus         4 q~p~~v~v~~G~~v~L~C~~~~~-----~~~v~W~r~~   36 (238)
T 1bec_A            4 QSPRNKVAVTGGKVTLSCQQTNN-----HNNMYWYRQD   36 (238)
T ss_dssp             EECSEEEEETTCCEEEEEEESSC-----CSEEEEEEEC
T ss_pred             cCCCeeEEeCCCcEEEEEEeCCC-----CceEEEEEEC
Confidence            56888999999999999998643     4569999974

>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=96.93  E-value=0.00089  Score=40.31  Aligned_cols=36  Identities=22%  Similarity=0.197  Sum_probs=28.5

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .+.|..+++..|++|.|+|.+....+   .+.+.|.|+.
T Consensus         4 ~q~p~~~~~~~G~~vtL~C~~~~~~~---~~~v~W~r~~   39 (116)
T 1tvd_A            4 TQSSPDQTVASGSEVVLLCTYDTVYS---NPDLFWYRIR   39 (116)
T ss_dssp             ECCSCCEEEETTCCEEECCEEECCSS---SCCEEEEEEC
T ss_pred             ecCCCcEEEecCCeEEEEeEeEcCCC---CcEEEEEEeC
Confidence            46788999999999999999874322   3458999874

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=96.92  E-value=0.00056  Score=40.75  Aligned_cols=35  Identities=11%  Similarity=0.213  Sum_probs=28.2

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      +.|..+++..|++|.|+|.+.-...   ++.+.|.|+.
T Consensus         6 ~~p~~v~~~~G~~v~L~C~~~~~~~---~~~v~W~~~~   40 (113)
T 1zox_A            6 TGPEEVSGQEQGSLTVQCRYTSGWK---DYKKYWCQGV   40 (113)
T ss_dssp             ECCSEEEEETTSCEEEEEEECGGGT---TSCEEEEESS
T ss_pred             CCCCEEEEeCCCcEEEEeECCCCcc---cceEEEEeCC
Confidence            5678899999999999999975322   3569999975

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=96.91  E-value=0.0007  Score=42.76  Aligned_cols=34  Identities=18%  Similarity=0.392  Sum_probs=27.2

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      +.|..+++..|+.|.|.|.+.   +.|.|. +.|.|++
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~---~~~~~~-v~W~k~~   39 (213)
T 3d9a_L            6 QSPATLSVTPGNSVSLSCRAS---QSIGNN-LHWYQQK   39 (213)
T ss_dssp             EECSEEEECTTCCEEEEEEES---SCCTTC-EEEEEEC
T ss_pred             eCCccEEEeCCCcEEEEEECC---CCCCCC-EEEEEeC
Confidence            457889999999999999975   345565 9998864

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=96.91  E-value=0.001  Score=42.22  Aligned_cols=31  Identities=16%  Similarity=0.465  Sum_probs=25.9

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      |..+++..|+.|.|.|.+.   +.|.|+ +.|.|+
T Consensus         7 p~~~~v~~G~~v~L~C~~~---~~~~~~-v~W~~~   37 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKAS---ESVTSR-MHWYQQ   37 (210)
T ss_dssp             CSEEEECTTSCEEEEEEES---SCCTTC-EEEEEE
T ss_pred             CCcEEEcCCCCEEEEeeCC---CccCCC-EEEEEE
Confidence            8899999999999999975   344565 999885

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=96.89  E-value=0.001  Score=38.37  Aligned_cols=35  Identities=14%  Similarity=0.315  Sum_probs=26.2

Q ss_pred             ceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           41 VHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        41 ~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      +.++|..|+.|.|.|.+..+.. +-.+.+.|.|++.
T Consensus         2 ~~v~~~~G~~v~L~C~~~~~~~-~~~~~v~W~~~~~   36 (109)
T 2oyp_A            2 DGYKVEVGKNAYLPCSYTLPTS-GTLVPMCWGKGFC   36 (109)
T ss_dssp             EEEEECTTSCEEECCBCCCCTT-CCCCCEEEESSSC
T ss_pred             CCEEEEcCCCEEEEEEeECCCC-CCeEEEEEEecCC
Confidence            3478999999999999986532 2235689999753

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=96.87  E-value=0.0016  Score=39.57  Aligned_cols=36  Identities=19%  Similarity=0.269  Sum_probs=28.8

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      .+.|+.+++..|+.|.|.|.+.   +.|.| .+.|.|++.
T Consensus         5 ~~~~~~~~v~~G~~v~L~C~~~---~~p~~-~v~W~~~~~   40 (124)
T 3rbg_A            5 TNHTETITVEEGQTLTLKCVTS---LRKNS-SLQWLTPSG   40 (124)
T ss_dssp             CCSEEEEEEETTSCEEEEEECC---CCTTC-EEEEECTTS
T ss_pred             cCCCccEEEcCCCCEEEEeEEe---ccCCC-EEEEECCCC
Confidence            4568899999999999999987   44444 689997654

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=96.85  E-value=0.0015  Score=41.29  Aligned_cols=37  Identities=24%  Similarity=0.401  Sum_probs=30.1

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..|+.+++..|+.|.|.|.+.-+..   +..++|.|++.+
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~---~~~v~W~~~~~~   41 (231)
T 2pet_A            5 SVPPLVEVMRGKSVILDCTPTGTHD---HYMLEWFLTDRS   41 (231)
T ss_dssp             CCCSEEEEETTCCEEECCCCBSCCS---EEEEEEEEECTT
T ss_pred             cCCCcEEEEcCCCEEEecccCCCCC---ceEEEEEEeCCC
Confidence            4688899999999999999875522   678999987654

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=96.85  E-value=0.0013  Score=42.43  Aligned_cols=35  Identities=20%  Similarity=0.334  Sum_probs=27.5

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      .|+.+++.+|++|.|.|.+.-  +.++| .+.|.|+|.
T Consensus         4 ~p~~v~~~~G~~v~L~C~~~~--~~~~~-~v~W~~~~~   38 (193)
T 2if7_A            4 TPLMVNGILGESVTLPLEFPA--GEKVN-FITWLFNET   38 (193)
T ss_dssp             CCEEEEEETTSCEEECCCCCC--CSCCC-EEEEEETTE
T ss_pred             CCeEEEEEecCeEEEeccCCC--ccccc-EEEEEECCE
Confidence            588999999999999999853  22333 689999864

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=96.84  E-value=0.00084  Score=41.83  Aligned_cols=35  Identities=17%  Similarity=0.199  Sum_probs=28.4

Q ss_pred             CCcceEEeecCCeEEEeeecC--CCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVD--FPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvd--fP~~~PiPYVvqW~KdG~~   77 (80)
                      ..|..+++..|+.|.|.|.+.  .|.     ..++|.|+|..
T Consensus         7 ~~p~~~~v~~G~~v~l~C~~~~~~p~-----~~v~W~~~g~~   43 (195)
T 2c5d_C            7 GNPGNITGARGLTGTLRCQLQVQGEP-----PEVHWLRDGQI   43 (195)
T ss_dssp             ECCCCEEECTTCCEEEEEEEEEESSC-----CCCEEEETTEE
T ss_pred             cChhheEEecCCcEEEecccccCCCC-----cEEEEEECCEE
Confidence            367888999999999999997  442     24899999865

>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A

Probab=96.83  E-value=0.00094  Score=40.19  Aligned_cols=36  Identities=22%  Similarity=0.304  Sum_probs=28.1

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .+.|..+++..|++|.|+|.+....  + .+.+.|.|+.
T Consensus         3 ~q~p~~~~~~~G~~v~L~C~~~~~~--~-~~~v~W~rq~   38 (111)
T 2qhl_A            3 IKELHVKTVKRGENVTMECSMSKVK--D-KDKLAWYRQS   38 (111)
T ss_dssp             CCBCEEEECCTTCCEEECCBCTTCS--C-GGGEEEEEEC
T ss_pred             cCCCceEEEeCCCCEEEEEEccCCc--c-cceEEEEEec
Confidence            4678999999999999999986221  2 3459999864

>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC, immune system; HET: NAG; 2.40A {Mus musculus} SCOP: b.1.1.1 PDB: 3b9k_B*

Probab=96.82  E-value=0.0011  Score=39.78  Aligned_cols=35  Identities=9%  Similarity=0.198  Sum_probs=28.2

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |.|..+++..|++|.|+|.+.....   .+.+.|.|+.
T Consensus         3 Q~p~~~~~~~G~~vtL~C~~~~~~~---~~~v~W~r~~   37 (115)
T 2atp_B            3 QTPSSLLVQTNHTAKMSCEVKSISK---LTSIYWLRER   37 (115)
T ss_dssp             EECSEEEECTTSCEEEEEECCSSCC---SSEEEEEEEE
T ss_pred             cCCCCEEEcCCCcEEEEEEecCCCC---cccEEEEEeC
Confidence            5688899999999999999974322   3569999875

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=96.82  E-value=0.0012  Score=43.21  Aligned_cols=36  Identities=31%  Similarity=0.475  Sum_probs=29.3

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .+|..+++..|+.|.|.|.+.   +.|.| .++|.|+|.+
T Consensus        10 ~~p~~~~~~~G~~v~l~C~~~---g~p~~-~v~W~~~~~~   45 (284)
T 2rik_A           10 LKPVSVDLALGESGTFKCHVT---GTAPI-KITWAKDNRE   45 (284)
T ss_dssp             ECCCCEEEETTCCEEEEEEEE---SSSCC-EEEEEETTEE
T ss_pred             ccccceEecCCCcEEEEEEEE---cCCCC-EEEEEECCEE
Confidence            467778899999999999987   44443 7999999864

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=96.81  E-value=0.0013  Score=40.71  Aligned_cols=36  Identities=14%  Similarity=0.413  Sum_probs=28.4

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..|..+++..|+.|.|.|.+.   +.|.| .++|.|+|..
T Consensus         9 ~~~~~~~v~~G~~v~l~C~~~---~~p~~-~v~W~~~~~~   44 (197)
T 2j8h_A            9 EELRNLNVRYQSNATLVCKVT---GHPKP-IVKWYRQGKE   44 (197)
T ss_dssp             ECCCCEEEETTSCEEEEEEEE---CSSCC-EEEEEETTEE
T ss_pred             EcCCccEEcCCCEEEEEEEEe---ecCCC-EEEEEECCEE
Confidence            356778899999999999985   44443 4899999865

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=96.80  E-value=0.0011  Score=37.93  Aligned_cols=39  Identities=21%  Similarity=0.379  Sum_probs=29.2

Q ss_pred             CCCCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           34 SPDISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        34 ~g~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      ......|+.+++..|+.|.|.|.+.-.   |. ..+.|.|++.
T Consensus         7 p~~~~~~~~~~v~~G~~v~L~C~~~~~---~~-~~v~W~~~~~   45 (108)
T 3m45_A            7 QGQFPLTQNVTVVEGGTAILTCRVDQN---DN-TSLQWSNPAQ   45 (108)
T ss_dssp             -CCCEECCCEEEETTSCEEEEEEESSC---SS-CCEEEECTTC
T ss_pred             CCccccCCeeEEEeCCcEEEEeEEcCC---Cc-cEEEEEcCCC
Confidence            334557888999999999999999752   33 3479998764

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=96.79  E-value=0.00084  Score=40.42  Aligned_cols=36  Identities=11%  Similarity=0.258  Sum_probs=28.5

Q ss_pred             CCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           36 DISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        36 ~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      ..+.|..+++..|++|.|+|.+...   + .+.+.|.|+.
T Consensus         7 v~q~p~~~~~~~G~~v~L~C~~~~~---~-~~~v~W~r~~   42 (111)
T 1i3g_L            7 LTQSHKFMSTSVGDRVSITCKASQD---V-GTAVAWYQQK   42 (111)
T ss_dssp             EEESCSEEECCTTCCEEEEEEESSC---C-TTCEEEEEEC
T ss_pred             EEEeCCEEEEcCCCCEEEEEEeCCC---C-CCCEEEEEEC
Confidence            3567889999999999999998643   2 2348999875

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.79  E-value=0.0012  Score=42.08  Aligned_cols=35  Identities=14%  Similarity=0.102  Sum_probs=28.4

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      +.++..++..|+.|.|.|.+.-   .|-   ++|.|+|++-
T Consensus        13 ~~l~d~~v~eG~~a~f~C~vs~---~p~---v~W~knG~~l   47 (112)
T 2e6q_A           13 AGLEDVQVYDGEDAVFSLDLST---IIQ---GTWFLNGEEL   47 (112)
T ss_dssp             ECCCCEEEETTCEEEEEEEESS---CCC---CEEEESSCBC
T ss_pred             cCCCCeEEcCCCcEEEEEEECC---CCe---EEEEECCEEC
Confidence            3567788999999999999984   332   8899999764

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=96.78  E-value=0.00097  Score=43.32  Aligned_cols=33  Identities=18%  Similarity=0.241  Sum_probs=26.7

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      .+.|+.+++..|+.|.|.|.+..    + .+.+.|.|+
T Consensus         6 ~~~p~~v~v~~G~~v~L~C~~~~----~-~~~v~W~k~   38 (240)
T 3q5y_A            6 VQSPRHIIKEKGGRSVLTCIPIS----G-HSNVVWYQQ   38 (240)
T ss_dssp             EEECSEEEEETTCCEEEEEECCT----T-CCEEEEEEE
T ss_pred             ccCcceeeecCCCcEEEEEEeCC----C-CceEEEEEE
Confidence            45788899999999999999864    2 246899984

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=96.77  E-value=0.001  Score=40.92  Aligned_cols=36  Identities=25%  Similarity=0.586  Sum_probs=28.9

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..|..+++..|+.|.|.|.++   +.|.| .++|.|+|..
T Consensus        12 ~~~~~~~~~~G~~v~l~C~~~---~~p~~-~i~W~~~~~~   47 (192)
T 2iep_A           12 TPLETVDALVEEVATFMCAVE---SYPQP-EISWTRNKIL   47 (192)
T ss_dssp             SCCCEEEEETTSCEEEECCEE---EESCC-EEEEEETTEE
T ss_pred             cCccceeeeCCCcEEEEeeCC---CCCCC-eEEEEECCEE
Confidence            456778899999999999985   44555 6899999865

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=96.76  E-value=0.00091  Score=42.67  Aligned_cols=35  Identities=31%  Similarity=0.529  Sum_probs=28.4

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|..+++..|+.|.|.|.+.   +.|.| .++|.|+|..
T Consensus        12 ~p~~~~v~~G~~v~L~C~~~---g~p~~-~v~W~k~~~~   46 (212)
T 2yd6_A           12 TPVDQTGVSGGVASFICQAT---GDPRP-KIVWNKKGKK   46 (212)
T ss_dssp             CCCCEEEETTSCEEEEEEEE---EESCC-EEEEEETTEE
T ss_pred             CcceeEEecCCeEEEEEEEe---eCCCC-EEEEEECCcC
Confidence            56678899999999999997   44444 6999999865

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=96.76  E-value=0.00073  Score=42.57  Aligned_cols=35  Identities=23%  Similarity=0.488  Sum_probs=28.3

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|..+++..|+.|.|.|.+.   +.|.|. ++|.|+|..
T Consensus        47 ~~~~~~v~~G~~v~L~C~~~---g~P~p~-v~W~k~g~~   81 (154)
T 1fhg_A           47 TILDMEVVEGSAARFDCKVE---GYPDPE-VMWFKDDNP   81 (154)
T ss_dssp             CCCCEEEETTSCEEEEEEEE---EESCCE-EEEEETTEE
T ss_pred             cCCcEEEeCCCeEEEEEEEE---EecCCE-EEEEECCEE
Confidence            45567899999999999984   556664 999999864

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=96.75  E-value=0.0016  Score=40.12  Aligned_cols=36  Identities=19%  Similarity=0.329  Sum_probs=28.3

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .+.|..+++..|+.|.|+|.+.-..  | .+.+.|.|++
T Consensus         7 ~q~p~~~~v~~G~~vtL~C~~~~~~--~-~~~v~W~r~~   42 (127)
T 2jju_A            7 IQPEKSVSVAAGESATLRCAMTSLI--P-VGPIMWFRGA   42 (127)
T ss_dssp             ECCCSEEEEETTSCEEECCEESCCC--S-CCCEEEEECS
T ss_pred             EeeCCeEEEeCCCCEEEEEEEeCCC--C-CCEEEEEecC
Confidence            4578899999999999999986431  2 2458999976

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=96.74  E-value=0.0011  Score=40.42  Aligned_cols=37  Identities=22%  Similarity=0.207  Sum_probs=28.6

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .+.|..+++..|+.|.|.|.+..... + ++.+.|.|+.
T Consensus         4 ~q~p~~~~v~~G~~v~L~C~~~~~~~-~-~~~v~W~r~~   40 (113)
T 1sq2_N            4 DQTPRSVTKETGESLTINCVLRDASY-A-LGSTCWYRKK   40 (113)
T ss_dssp             EEECSEEEECTTCCEEEEEEECSCSS-C-CCCEEEEEEE
T ss_pred             EeCCccEEEecCCCEEEEEEECCCcC-C-CCEEEEEEeC
Confidence            45688999999999999999975421 1 2458999974

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=96.73  E-value=0.00067  Score=42.65  Aligned_cols=36  Identities=19%  Similarity=0.397  Sum_probs=27.8

Q ss_pred             eEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           42 HITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        42 ~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .+++.+|+.|.|.|.+..+....++..+.|.|+|..
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~   38 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKM   38 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcE
Confidence            478999999999999976632224567899998764

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=96.73  E-value=0.001  Score=42.52  Aligned_cols=36  Identities=19%  Similarity=0.325  Sum_probs=29.4

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..|..+++..|+.|.|.|.+.   +.|.| -++|.|+|..
T Consensus        23 ~~p~~~~~~~G~~v~l~C~~~---g~p~p-~i~W~~~g~~   58 (215)
T 3mtr_A           23 QGPVAVYTWEGNQVNITCEVF---AYPSA-TISWFRDGQL   58 (215)
T ss_dssp             ECCSEEEECTTCCEEEEEEEE---EESCC-EEEEEETTEE
T ss_pred             cCCceEEEECCCCEEEEEEEe---ecCCC-EEEEEECCeE
Confidence            366678899999999999876   56666 6799999864

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=96.73  E-value=0.0013  Score=41.50  Aligned_cols=35  Identities=23%  Similarity=0.500  Sum_probs=28.2

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|..+++..|+.|.|.|.+.   +.|.| .++|.|+|..
T Consensus        15 ~p~~~~v~~G~~v~L~C~~~---g~p~~-~v~W~~~g~~   49 (217)
T 2vr9_A           15 HPTDLVVKKNEPATLNCKVE---GKPEP-TIEWFKDGEP   49 (217)
T ss_dssp             CCCCEEECTTSCEEECCEEE---CSSCC-EEEEEETTEE
T ss_pred             CCCceEEeCCCcEEEEEEcC---CCCCC-eEEEEECCcC
Confidence            56678899999999999985   44554 5899999865

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=96.72  E-value=0.00091  Score=40.08  Aligned_cols=37  Identities=19%  Similarity=0.185  Sum_probs=28.7

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .+.|..+++..|++|.|.|.+.... .+ ++.+.|.|+.
T Consensus         4 ~q~p~~~~v~~G~~v~L~C~~~~~~-~~-~~~v~W~r~~   40 (108)
T 2coq_A            4 DQTPRIATKETGESLTINCVLRDTA-CA-LDSTNWYRTK   40 (108)
T ss_dssp             EEECSEEEECTTCCEEEEEEECCSS-EE-EEEEEEEEEE
T ss_pred             EeCCceEEEcCCCCEEEEeEeCCCc-CC-CCEEEEEEcC
Confidence            4578899999999999999986532 12 3568999984

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=96.71  E-value=0.0019  Score=40.25  Aligned_cols=35  Identities=23%  Similarity=0.357  Sum_probs=29.5

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|..+++..|+.|.|.|.+.   +.|.|. ++|.|+|.+
T Consensus       123 ~~~~~~v~~g~~~~l~C~~~---g~p~p~-v~W~~~~~~  157 (212)
T 2r15_A          123 LPDVVTIQEGKALNLTCNVW---GDPPPE-VSWLKNEKA  157 (212)
T ss_dssp             CCSEEEEETTCCEEEEEEEE---CSSCCE-EEEEETTEE
T ss_pred             CCCcEEEccCCeEEEEEEEc---CCCCce-EEEEECCeE
Confidence            46677899999999999987   677776 899999865

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=96.71  E-value=0.0011  Score=39.65  Aligned_cols=33  Identities=15%  Similarity=0.272  Sum_probs=25.6

Q ss_pred             cceEEeecCCeEEEeee-cCCCCCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCG-VDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCd-vdfP~~~PiPYVvqW~KdG   75 (80)
                      |..+++..|++|.|.|. +....   ..+.+.|.|++
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~---~~~~v~W~r~~   40 (109)
T 1pew_A            7 PHSVSESPGKTVTISCTRSSGNI---ASNYVQWYQQR   40 (109)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCG---GGSCCEEEEC-
T ss_pred             CCCEEEcCCCCEEEEEEeCCCCC---CCccEEEEEEC
Confidence            88999999999999999 65321   13569999986

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=96.70  E-value=0.0012  Score=42.28  Aligned_cols=37  Identities=19%  Similarity=0.284  Sum_probs=30.1

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      +|...++..|+.|.|.|.+.   +.|.|..++|.|+|...
T Consensus         7 ~p~~~~v~~G~~v~l~C~~~---~~~~~~~~~W~~~g~~~   43 (262)
T 3rjd_A            7 QPPWVSVFQEETVTLHCEVL---HLPGSSSTQWFLNGTAT   43 (262)
T ss_dssp             SSCCSEEETTCCEEEEEECS---SCCCTTCEEEEETTEEC
T ss_pred             CCCcEEeeCCCeEEEEEECC---CCCCCceEEEEECCEEe
Confidence            56667889999999999974   55667789999998753

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=96.70  E-value=0.0009  Score=39.97  Aligned_cols=35  Identities=14%  Similarity=0.339  Sum_probs=27.2

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .+.|..+++..|+.|.|.|.+...   + ...+.|.|+.
T Consensus         5 ~q~p~~~~v~~G~~v~L~C~~~~~---~-~~~v~W~r~~   39 (108)
T 1qfw_M            5 TQSPKSMSMSVGERVTLSCKASET---V-DSFVSWYQQK   39 (108)
T ss_dssp             EEECSCEECCTTCCEEEEEEESSC---C-CSCEEEEEEC
T ss_pred             EEeCCeEEEcCCCCEEEEeeeCCC---C-CcEEEEEEEC
Confidence            346788999999999999998643   2 2348999874

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=96.70  E-value=0.0018  Score=42.91  Aligned_cols=34  Identities=15%  Similarity=0.164  Sum_probs=27.5

Q ss_pred             CCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           36 DISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        36 ~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      ..+.|..+++..|+.|.|.|.+..|     .+.+.|.|+
T Consensus        29 v~~~p~~v~v~~G~~v~L~C~~~~~-----~~~v~W~r~   62 (268)
T 3pl6_D           29 VSQTPSNKVTEKGKYVELRCDPISG-----HTALYWYRQ   62 (268)
T ss_dssp             CBCCCSEEEEETTCCEEEEEBCBTT-----CCEEEEEEE
T ss_pred             eEeCCCEEEecCCCCEEEEEEeCCC-----CceEEEEEE
Confidence            3567889999999999999998733     346899993

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=96.70  E-value=0.0017  Score=42.66  Aligned_cols=34  Identities=12%  Similarity=0.232  Sum_probs=27.9

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .+.|..+++..|+.|.|.|.+..+.    ++ +.|.|+.
T Consensus         5 ~q~p~~v~v~~G~~v~L~C~~~~~~----~~-v~W~r~~   38 (207)
T 1ypz_E            5 EQSPSALSLHEGTDSALRCNFTTTM----RS-VQWFRQN   38 (207)
T ss_dssp             EESCSEEEEETTCCEEEEEEESSCC----SE-EEEEEEC
T ss_pred             EECCCeEEEccCCcEEEEEEEeCCC----eE-EEEEEeC
Confidence            4678899999999999999997542    44 9999864

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=96.69  E-value=0.0012  Score=40.35  Aligned_cols=36  Identities=22%  Similarity=0.508  Sum_probs=28.5

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..|..+++..|+.|.|.|.+.   +.|.| .++|.|+|..
T Consensus        12 ~~~~~~~v~~G~~v~l~C~~~---~~p~~-~v~W~~~~~~   47 (197)
T 3lcy_A           12 KEMKDVTTKLGEAAQLSCQIV---GRPLP-DIKWYRFGKE   47 (197)
T ss_dssp             ECCCCEEEETTSEEEEEEEEE---EESCC-EEEEEETTEE
T ss_pred             ccCCceEEeCCCcEEEEEEEe---cCCCC-EEEEEECCEE
Confidence            356778899999999999984   34444 6999999864

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=96.69  E-value=0.0011  Score=40.71  Aligned_cols=35  Identities=20%  Similarity=0.401  Sum_probs=28.0

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|..+++..|+.|.|.|.+.   +.|.| .++|.|+|..
T Consensus        11 ~~~~~~v~~G~~v~l~C~~~---~~p~~-~v~W~~~~~~   45 (194)
T 2a38_A           11 PLQSVVVLEGSTATFEAHIS---GFPVP-EVSWFRDGQV   45 (194)
T ss_dssp             CCCCEEEETTSCEEEEEEEE---EESCC-EEEEEESSSB
T ss_pred             cCCceEEECCCEEEEEEEEE---ecCCC-EEEEEECCEE
Confidence            56667899999999999984   44544 5999999865

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=96.67  E-value=0.001  Score=39.66  Aligned_cols=35  Identities=14%  Similarity=0.287  Sum_probs=27.4

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .+.|..+++..|++|.|.|.+...   +-| .+.|.|+.
T Consensus         5 ~q~p~~~~~~~G~~v~L~C~~~~~---~~~-~v~W~r~~   39 (107)
T 1i8k_A            5 TQSPASLSVATGEKVTIRCMTSTD---IDD-DMNWYQQK   39 (107)
T ss_dssp             EEECSEEECCTTCCEEEEEEESSC---CTT-CEEEEEEC
T ss_pred             EeCCCeEEecCCCCEEEEEEECCC---CCC-cEEEEEEC
Confidence            356888999999999999998632   233 48999974

>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A

Probab=96.67  E-value=0.0018  Score=38.78  Aligned_cols=35  Identities=17%  Similarity=0.416  Sum_probs=25.9

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |..+++..|++|.|+|.+......+ .+.+.|.|+.
T Consensus         5 ~~~~~~~~G~~v~L~C~~~~~~~~~-~~~v~W~rq~   39 (116)
T 3bj9_1            5 PPAMSSALGTTIRLTCTLRNDHDIG-VYSVYWYQQR   39 (116)
T ss_dssp             CSEEEEETTCCEEEEEEECSSSCGG-GCCEEEEEEC
T ss_pred             CCcEEEcCCCcEEEEEEeecCccCC-CceEEEEEeC
Confidence            4468999999999999997542212 2458999864

>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*

Probab=96.67  E-value=0.0015  Score=39.63  Aligned_cols=35  Identities=14%  Similarity=0.173  Sum_probs=27.3

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|.|..+++..|+.|.|+|.+.-   .+. +-+.|.|+.
T Consensus         5 ~q~p~~~~v~~G~~vtL~C~~~~---~~~-~~v~W~rq~   39 (112)
T 1fo0_B            5 EQNPRWRLVPRGQAVNLRCILKN---SQY-PWMSWYQQD   39 (112)
T ss_dssp             EEECSEEECCTTCCEEEEEEESC---TTC-CEEEEEEEC
T ss_pred             EeCCCeEEEecCCcEEEEEEeCC---CCC-ceEEEEEEC
Confidence            46788999999999999999852   222 458999874

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=96.67  E-value=0.0014  Score=43.58  Aligned_cols=34  Identities=15%  Similarity=0.187  Sum_probs=27.2

Q ss_pred             CCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           36 DISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        36 ~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      ..+.|..+++..|+.|.|.|.+..|     ++.+.|.|+
T Consensus        30 v~~~p~~v~v~~G~~v~L~C~~~~~-----~~~v~W~k~   63 (270)
T 3qib_D           30 VIQTPRYLVKGQGQKAKMRCIPEKG-----HPVVFWYQQ   63 (270)
T ss_dssp             CEEECSEEEEETTSCEEEEEECCTT-----CCEEEEEEE
T ss_pred             EEeCCCeEEEcCCCCEEEEEEecCC-----CceEEEEEE
Confidence            3457888999999999999997542     356999984

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=96.65  E-value=0.0018  Score=40.31  Aligned_cols=37  Identities=19%  Similarity=0.315  Sum_probs=30.1

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      .|...++..|+.|.|.|.+.   +.|.|.-+.|.|+|.+.
T Consensus       112 ~~~~~~~~~g~~~~l~C~~~---g~p~p~~v~W~~~~~~~  148 (195)
T 2c5d_C          112 EPEDRTVAANTPFNLSCQAQ---GPPEPVDLLWLQDAVPL  148 (195)
T ss_dssp             CCCCEEECTTCCEEEEEEEE---CSSCCCEEEEEESSCBS
T ss_pred             CCCcEEEcCCCEEEEEeECC---CCCCCCEEEEEECCEec
Confidence            45556789999999999884   67888789999998753

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.65  E-value=0.00089  Score=39.00  Aligned_cols=34  Identities=18%  Similarity=0.234  Sum_probs=27.0

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|+.+++..|+.|.|.|.+.-   .| | -++|.|+|.+
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~~---~~-~-~v~W~k~g~~   47 (101)
T 2edk_A           14 PLEDQQVFVGDRVEMAVEVSE---EG-A-QVMWMKNGVE   47 (101)
T ss_dssp             CCCCEEEESSCCCBCCEEESC---SS-C-CCEEEESSCB
T ss_pred             cCCceEEcCCCCEEEEEEEeC---CC-C-EEEEEECCEE
Confidence            456688999999999999863   33 3 4899999875

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=96.65  E-value=0.00098  Score=39.85  Aligned_cols=39  Identities=15%  Similarity=0.255  Sum_probs=28.2

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .+.|..+++..|+.|.|.|.+.-.....-.+.+.|.|+.
T Consensus         5 ~q~p~~~~~~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~   43 (111)
T 1j05_L            5 TQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQK   43 (111)
T ss_dssp             EEECSEEECCTTSCEEEEEEESSCCEETTEECEEEEEEC
T ss_pred             EEeCCEEEEeCCCCEEEEeecCCCcccCCCceEEEEEeC
Confidence            356888999999999999998643210013558999974

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=96.64  E-value=0.0022  Score=40.43  Aligned_cols=33  Identities=15%  Similarity=0.426  Sum_probs=26.1

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      .+.| .+++..|+.|.|.|.+.   +.| +..+.|.|+
T Consensus         5 ~~~~-~~~v~~G~~v~L~C~~~---~~~-~~~v~W~k~   37 (213)
T 3mj8_L            5 TQPP-LVSVALGQKATITCSGD---KLS-DVYVHWYQQ   37 (213)
T ss_dssp             BCCS-EEEEETTSCEEEEEECS---STT-TSCEEEEEE
T ss_pred             EeCC-cEEEeCCCCEEEEEEcC---CCC-CceEEEEEE
Confidence            3556 88999999999999998   333 345899984

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=96.64  E-value=0.0011  Score=40.94  Aligned_cols=39  Identities=13%  Similarity=0.252  Sum_probs=28.8

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .+.|..+++..|+.|.|+|.+....-..-.+.+.|.|+.
T Consensus         5 ~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~   43 (126)
T 4ffy_L            5 TQSPASLAVSLGQRATISCRASESVDHYGNSFIYWYQQK   43 (126)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCEETTEECEEEEEEC
T ss_pred             EeCCCeEEEeCCCCEEEEEecCCCcccCCCceEEEEEEC
Confidence            356888999999999999998754200014568999974

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=96.63  E-value=0.00029  Score=47.62  Aligned_cols=35  Identities=17%  Similarity=0.315  Sum_probs=28.1

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .+.|..+++..|+.|.|.|.+.   +.| .+.+.|.|++
T Consensus        28 ~~~p~~v~v~~G~~v~L~C~~~---~~~-~~~v~W~r~~   62 (279)
T 2wbj_D           28 SQHPSWVISKSGTSVKIECRSL---DFQ-ATTMFWYRQF   62 (279)
T ss_dssp             EEECSEEEEETTSCEEEEEEES---SSC-EEEEEEEEEC
T ss_pred             EeCCCeEEecCCCeEEEEEEeC---CCC-CCeEEEEEeC
Confidence            4568889999999999999984   333 4679999874

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=96.63  E-value=0.0015  Score=40.24  Aligned_cols=35  Identities=23%  Similarity=0.311  Sum_probs=28.4

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|...++..|+.+.|.|.++   +.|.|- ++|.|+|..
T Consensus       106 ~~~~~~~~~g~~~~l~C~~~---g~p~~~-v~W~~~~~~  140 (191)
T 1epf_A          106 APTPQEFKEGEDAVIVCDVV---SSLPPT-IIWKHKGRD  140 (191)
T ss_dssp             CCSSEECCTTSCEEECCEEE---CSSCCE-EEEEETTEE
T ss_pred             CCCcEeecCCCeEEEEEEEC---CCCCCE-EEEEECCEE
Confidence            45556789999999999998   566665 999999864

>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A

Probab=96.63  E-value=0.0018  Score=39.53  Aligned_cols=36  Identities=17%  Similarity=0.363  Sum_probs=29.0

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|.|..+++..|++|.|+|.+....+   .+.+.|.|+.
T Consensus         3 ~q~p~~~~v~~G~~vtL~C~~~~~~~---~~~v~Wyrq~   38 (117)
T 3bp6_A            3 TFYPAWLTVSEGANATFTCSLSNWSE---DLMLNWNRLS   38 (117)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCT---TCEEEEEEEC
T ss_pred             eecCCcEEEeCCCCEEEEeEeecCCC---CCEEEEEEeC
Confidence            35788999999999999999986432   2569999873

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=96.61  E-value=0.0016  Score=43.37  Aligned_cols=36  Identities=25%  Similarity=0.454  Sum_probs=25.4

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .+|..+++..|+.|.|.|.+.   +.|.| .++|.|+|..
T Consensus        11 ~~p~~~~v~~G~~v~l~C~~~---g~p~~-~i~W~k~g~~   46 (304)
T 2yd9_A           11 KEPKDQIGVSGGVASFVCQAT---GDPKP-RVTWNKKGKK   46 (304)
T ss_dssp             ECCCCEEEETTSCEEEEEEEE---CSSCC-EEEEC-----
T ss_pred             ecCCceEecCCCeEEEEEEEE---EeCCC-eEEEEECCEE
Confidence            357778899999999999985   55655 6899999864

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=96.61  E-value=0.00088  Score=45.69  Aligned_cols=35  Identities=14%  Similarity=0.174  Sum_probs=25.0

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|..+++..|+.|.|.|.+.-.. .. .+.+.|.|+.
T Consensus        29 q~~~~~~~~G~~v~L~C~~s~~~-~~-~~~v~W~rq~   63 (267)
T 3u1s_H           29 QSGAEVKKPGSSVKVSCKASGNS-FS-NHDVHWVRQA   63 (267)
T ss_dssp             ECCCEEECTTCCEEEEEEEGGGG-GG-TSEEEEEEEC
T ss_pred             eeCCEEEeCCCcEEEEEEeeCCc-cC-CCEEEEEEEC
Confidence            34457899999999999986321 11 2668998863

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=96.61  E-value=0.00059  Score=45.71  Aligned_cols=34  Identities=12%  Similarity=0.136  Sum_probs=24.8

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      .|..+++..|+.|.|.|.+.-..  .-.+.+.|.|+
T Consensus        29 ~~~~~~v~~G~~v~L~C~~~~~~--~~~~~v~W~r~   62 (256)
T 3sob_H           29 ESGGGLVQPGGSLRLSCAASGFT--FTNSYIHWVRQ   62 (256)
T ss_dssp             EECCCEECTTCCEEEEEEEESSC--GGGSCEEEEEE
T ss_pred             ecCcEEEcCCCCEEEEEEeeccc--cCCCEEEEEEE
Confidence            45567899999999999986321  11356899885

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=96.60  E-value=0.0023  Score=40.44  Aligned_cols=30  Identities=13%  Similarity=0.373  Sum_probs=25.0

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      +.| .+++..|+.|.|.|.+. |     +..+.|.|+
T Consensus         6 ~~~-~~~v~~G~~v~L~C~~~-~-----~~~v~W~k~   35 (211)
T 3tv3_L            6 QPP-SASGSPGQSITISCTGT-S-----NNFVSWYQQ   35 (211)
T ss_dssp             CCS-EEEECTTCEEEEEEECC-C-----SSCEEEEEE
T ss_pred             eCc-eEEEcCCCCEEEEEEEC-C-----CCeEEEEEE
Confidence            455 88999999999999998 3     345899995

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=96.60  E-value=0.0011  Score=41.39  Aligned_cols=36  Identities=19%  Similarity=0.247  Sum_probs=28.5

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +|...++..|+.|.|.|.+.   +.|.|..++|.|+|..
T Consensus        13 ~p~~~~v~~G~~v~L~C~~~---~~p~~~~~~W~~~~~~   48 (175)
T 1fnl_A           13 EPQWYSVLEKDSVTLKCQGA---YSPEDNSTQWFHNESL   48 (175)
T ss_dssp             ESCCSEEETTCCEEEEEECC---CBTTBCCCEEEETTEE
T ss_pred             cCCceeeeCCCcEEEEeeCC---CCCCCcceEEEECCEE
Confidence            45556789999999999975   4466777899999864

>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...

Probab=96.58  E-value=0.0014  Score=39.45  Aligned_cols=39  Identities=18%  Similarity=0.255  Sum_probs=28.3

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCC--CCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDT--PVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~--PiPYVvqW~KdG   75 (80)
                      .+.|..+++..|++|.|+|.+......  .-.+.+.|.|+.
T Consensus         5 ~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~r~~   45 (114)
T 1eeq_A            5 TQSPDSLAVSLGERATINCKSSQSVLDSSNSKNYLAWYQQK   45 (114)
T ss_dssp             EEECSEEEECTTSCEEEEEEESSCCEETTTTEECEEEEEEC
T ss_pred             EecCCeEEEcCCCeEEEEEEcCCCccccccCCccEEEEEEC
Confidence            356889999999999999998643210  012458999974

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=96.57  E-value=0.0012  Score=45.06  Aligned_cols=39  Identities=21%  Similarity=0.394  Sum_probs=31.4

Q ss_pred             CCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           36 DISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        36 ~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..++|+.+++..|+.|.|.|.+.-.  .| +..++|.|+|..
T Consensus        24 ~~~~P~~~~v~~G~~v~L~C~~~~~--~p-~~~v~W~k~g~~   62 (403)
T 3laf_A           24 FVSEPSDAVTMRGGNVLLNCSAESD--RG-VPVIKWKKDGLI   62 (403)
T ss_dssp             EEECCCCEEECTTCCEEECCEEECT--TC-CCEEEEEETTEE
T ss_pred             EEeCCCceEEecCCcEEEEEEcCCC--CC-CceEEEEECCEE
Confidence            4678999999999999999998643  22 346999999865

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=96.56  E-value=0.0025  Score=42.53  Aligned_cols=38  Identities=18%  Similarity=0.361  Sum_probs=29.4

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      +.|+.+++..|+.|.|.|.+..+.....+.-++|.|++
T Consensus        19 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~   56 (331)
T 3u83_A           19 QVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKST   56 (331)
T ss_dssp             --CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEE
T ss_pred             EcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcC
Confidence            35677899999999999999876443455679999975

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=96.55  E-value=0.0024  Score=39.17  Aligned_cols=37  Identities=14%  Similarity=0.308  Sum_probs=30.2

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      .|...++..|+.|.|.|.+.   +.|.|.-++|.|+|...
T Consensus       104 ~~~~~~~~~g~~~~l~C~~~---g~p~p~~v~W~~~~~~~  140 (182)
T 1rhf_A          104 EPKDLAVPPNAPFQLSCEAV---GPPEPVTIVWWRGTTKI  140 (182)
T ss_dssp             CCCCEEECTTCCEEEEEEEE---CSSSCCEEEEEETTEEC
T ss_pred             cCcceEecCCCEEEEEeEec---CCCCCCEEEEEcCCeEC
Confidence            34456789999999999984   77888889999998653

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=96.55  E-value=0.0015  Score=40.37  Aligned_cols=35  Identities=23%  Similarity=0.386  Sum_probs=27.4

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .+.|..+++..|++|.|.|.+...   + .+.+.|.|+.
T Consensus         5 ~q~p~~~~v~~G~~v~L~C~~~~~---~-~~~v~W~r~~   39 (120)
T 1mqk_L            5 TQTPVSLSASVGETVTITCRASEN---I-YSYLAWYQQK   39 (120)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSC---C-TTCEEEEEEC
T ss_pred             EecCCeEEEcCCCcEEEEEEeCCC---C-CceEEEEEEC
Confidence            356888999999999999998643   2 2348999974

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}

Probab=96.55  E-value=0.00055  Score=41.07  Aligned_cols=35  Identities=14%  Similarity=0.171  Sum_probs=25.3

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|..++|..|+.|.|+|.+..+.+.  .+.+.|.|+.
T Consensus         3 sp~~v~~~~G~~v~L~C~~~~~~~~--~~~v~W~~~~   37 (115)
T 2or7_A            3 SHTAVQGLAGHPVTLPCIYSTHLGG--IVPMCWGLGE   37 (115)
T ss_dssp             ---CEEEETTSCEEECCBCCHHHHC--SCCEEEEESC
T ss_pred             CccEEEEEcCCCEEEEEEeecCCCC--CEEEEEECCC
Confidence            4778899999999999999764221  2458999975

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=96.55  E-value=0.0013  Score=40.62  Aligned_cols=36  Identities=17%  Similarity=0.306  Sum_probs=28.0

Q ss_pred             CCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           36 DISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        36 ~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      ..+.|..+++..|++|.|.|.+.-.   +.| .+.|.|+.
T Consensus         6 v~q~p~~v~v~~G~~vtL~C~~~~~---~~~-~v~W~r~~   41 (119)
T 2e27_L            6 MTQSPSSLSASLGGKVTITCKANQD---IKK-KIAWYQHK   41 (119)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESSC---CTT-CEEEEEEC
T ss_pred             eEecCCeEEEeCCCCEEEEEEeCCC---CCc-eEEEEEEC
Confidence            3467889999999999999998632   233 48999974

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=96.54  E-value=0.002  Score=42.90  Aligned_cols=34  Identities=12%  Similarity=0.288  Sum_probs=28.1

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .+.|..+++..|+.|.|.|.+..+     .+.+.|.|+.
T Consensus         7 ~q~p~~v~v~~G~~v~L~C~~~~~-----~~~v~W~r~~   40 (252)
T 1oga_E            7 TQSPKYLFRKEGQNVTLSCEQNLN-----HDAMYWYRQD   40 (252)
T ss_dssp             ECSCSEEEEETTCCEEECCEECSC-----CSEEEEEEEC
T ss_pred             eEcCCeEEEcCCCcEEEEEEeCCC-----CCEEEEEEEC
Confidence            567889999999999999998643     3569999874

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=96.54  E-value=0.00088  Score=42.43  Aligned_cols=32  Identities=22%  Similarity=0.486  Sum_probs=26.3

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |..+++..|+.|.|.|.+.   +.|.|+ +.|.|++
T Consensus         6 p~~~~v~~G~~v~L~C~~~---~~~~~~-v~W~k~~   37 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGD---QLPKNF-AYWFQQK   37 (212)
T ss_dssp             CSEEEEETTSCCCEEEEET---TGGGSC-CEEEEEC
T ss_pred             CCeEEEeCCCcEEEEEecC---CCCCCe-EEEEEEC
Confidence            8889999999999999964   445565 9998863

>1dqt_A CTLA4, cytotoxic T lymphocyte associated antigen 4; immunoglobulin variable domain-like beta-sandwich, homodimer, immune system; 2.00A {Mus musculus} SCOP: b.1.1.1

Probab=96.52  E-value=0.0026  Score=38.40  Aligned_cols=37  Identities=8%  Similarity=0.027  Sum_probs=27.9

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      +.|..+++..|++|.|+|.+... +..-.|-+.|.|+.
T Consensus         4 q~p~~~~~~~G~~v~L~C~~~~~-~~~~~~~v~Wyrq~   40 (117)
T 1dqt_A            4 TQPSVVLASSHGVASFPCEYSPS-HNTDEVRVTVLRQT   40 (117)
T ss_dssp             ECCSEEECCTTSCEEEEEEEESC-CTTCEEEEEEEEEC
T ss_pred             eCCceEEEeCCCeEEEEEEeeCC-CCCCccEEEEEecC
Confidence            45788999999999999998632 11113679999974

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=96.52  E-value=0.0018  Score=38.24  Aligned_cols=33  Identities=18%  Similarity=0.255  Sum_probs=25.7

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|..+++..|+.|.|.|.+.-+     | -++|.|+|.+
T Consensus        25 ~~~~~~v~~G~~v~l~C~~~~~-----p-~v~W~k~~~~   57 (113)
T 2edh_A           25 GLRNEEATEGATAVLRCELSKM-----A-PVEWWKGHET   57 (113)
T ss_dssp             CCCCCEECTTSCEEEEEEESSC-----C-CCEEEESSSB
T ss_pred             cCCceEEeCCCeEEEEEEECCC-----C-cEEEEECCEE
Confidence            4556779999999999999432     2 3889999875

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=96.52  E-value=0.0025  Score=40.97  Aligned_cols=32  Identities=19%  Similarity=0.324  Sum_probs=25.1

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      |+.+.|.+|++|.|.|.+.-    | ...+.|.|++.
T Consensus         2 ~~~v~~~~G~~VtL~c~~~~----~-~~~i~W~~~~~   33 (171)
T 1ccz_A            2 SQQIYGVVYGNVTFHVPSNV----P-LKEVLWKKQKD   33 (171)
T ss_dssp             EEEEEEETTCCEEECCCCSS----C-CSCEEEEETTE
T ss_pred             ccEEEEEcCCCEEEcCCCCC----C-cceEEEEeCCc
Confidence            56788999999999999842    3 33589999864

>1u9k_A Triggering receptor expressed on myeloid cells 1; activating receptors, TREM-1, innate immunity, immune system receptor, immune system; 1.76A {Mus musculus} SCOP: b.1.1.1

Probab=96.50  E-value=0.0013  Score=39.87  Aligned_cols=36  Identities=8%  Similarity=0.241  Sum_probs=27.7

Q ss_pred             CCCcceEEeecCCeEEEeeecCC-CCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDF-PGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdf-P~~~PiPYVvqW~KdG   75 (80)
                      .+.|..+++..|++|.|+|.+.. +.+   .+.+.|.|+.
T Consensus         3 ~q~p~~v~~~~G~~vtL~C~~~~~~~~---~~~v~W~rq~   39 (114)
T 1u9k_A            3 VLEEERYDLVEGQTLTVKCPFNIMKYA---NSQKAWQRLP   39 (114)
T ss_dssp             --CCEEEEECTTCCEEEEEECCHHHHT---TSEEEEEECC
T ss_pred             ccCCccEEEeCCCcEEEEeEecCcccC---CceEEEEEeC
Confidence            57889999999999999999873 322   3679999973

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=96.50  E-value=0.0034  Score=38.79  Aligned_cols=36  Identities=11%  Similarity=0.195  Sum_probs=29.3

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..|..+++..|+.|.|.|.+.   +.| +..++|.|++..
T Consensus         6 ~~~~~~~v~~G~~v~L~C~~~---~~p-~~~v~W~~~~~~   41 (212)
T 1f97_A            6 TAQSDVQVPENESIKLTCTYS---GFS-SPRVEWKFVQGS   41 (212)
T ss_dssp             CSCSEEEEETTCCEEEECEEE---SCS-SEEEEEEEEETT
T ss_pred             ecCCCeEEEcCCCEEEEeEeC---CCC-CcEEEEEECCCc
Confidence            467788999999999999987   333 457999999865

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=96.48  E-value=0.0013  Score=44.36  Aligned_cols=36  Identities=14%  Similarity=0.338  Sum_probs=28.6

Q ss_pred             CCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           36 DISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        36 ~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      ..+.|..+++..|+.|.|.|.+.-   .| +..+.|.|++
T Consensus        15 v~~~p~~~~v~~G~~v~L~C~~~~---~p-~~~i~W~r~~   50 (276)
T 3auv_A           15 MTQSPSSLSASVGDRVTITCRASQ---DV-STAVAWYQQK   50 (276)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESS---CC-TTCEEEEEEC
T ss_pred             EEeCCCeEEEcCCCCEEEEeEcCC---CC-CCcEEEEEEC
Confidence            456789999999999999999863   33 3458999864

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=96.48  E-value=0.002  Score=42.03  Aligned_cols=36  Identities=19%  Similarity=0.341  Sum_probs=27.8

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCC----ceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPV----PYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~Pi----PYVvqW~KdG   75 (80)
                      .+.|..+++..|+.|.|.|.+.-   .|+    +..++|.|+.
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~---~~~~~~~~~~v~W~~~~   44 (247)
T 1svz_A            5 TQTPLYLPVSLGDQASISCRSSQ---TIVHNNGNTYLEWYLQK   44 (247)
T ss_dssp             EEECSEEEECTTCCEEEEEEESS---CCBCTTSCBCEEEEEEC
T ss_pred             EecCCeEEecCCCCEEEEEeCCC---cccccCCCceEEEEEEC
Confidence            35688899999999999999863   232    4568999863

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=96.48  E-value=0.0033  Score=40.04  Aligned_cols=35  Identities=20%  Similarity=0.452  Sum_probs=28.3

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|..+++..|+.|.|.|.+.   +.|.| -+.|.|+|..
T Consensus        21 ~~~~~~v~~G~~v~L~C~~~---~~p~~-~v~W~~~~~~   55 (241)
T 3grw_A           21 DKKLLAVPAANTVRFRCPAA---GNPTP-SISWLKNGRE   55 (241)
T ss_dssp             SCCEEEEETTSEEEEECCEE---CSSCC-EEEEEETTEE
T ss_pred             CCcceEEcCCCeEEEEEEec---CCCCc-eeEEEECCcc
Confidence            45568899999999999986   45555 7999999864

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=96.47  E-value=0.0027  Score=39.41  Aligned_cols=32  Identities=13%  Similarity=0.341  Sum_probs=25.3

Q ss_pred             ceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           41 VHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        41 ~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      +.+++..|+.|.|.|.+.   +.|. ..+.|.|++.
T Consensus         3 ~~v~~~~G~~v~L~C~~~---~~~~-~~i~W~~~~~   34 (184)
T 2ny1_B            3 KVVLGKKGDTVELTCTAS---QKKS-IQFHWKNSNQ   34 (184)
T ss_dssp             CEEEEETTSCEEECCBCS---SSSC-CCEEEEETTC
T ss_pred             CcEEEeCCCCEEEEEEEc---CCCc-eEEEEEeCCc
Confidence            467899999999999987   3333 4689999874

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=96.47  E-value=0.0014  Score=40.71  Aligned_cols=35  Identities=23%  Similarity=0.555  Sum_probs=28.1

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|..+++..|+.|.|.|.+.   +.|.| .++|.|+|..
T Consensus        15 ~p~~~~v~~G~~v~l~C~~~---~~p~~-~v~W~~~~~~   49 (212)
T 2v9r_A           15 HPSDLIVSKGEPATLNCKAE---GRPTP-TIEWYKGGER   49 (212)
T ss_dssp             CCCCEEECTTCCEEECCEEE---EESCC-EEEEEETTEE
T ss_pred             CCCceEEeCCCcEEEEEEcC---CCCCC-EEEEEECCEE
Confidence            56778899999999999985   34444 7999999764

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=96.45  E-value=0.0028  Score=38.83  Aligned_cols=39  Identities=15%  Similarity=0.256  Sum_probs=29.9

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .+.|..+++..|+.|.|.|.+  +.+.|....++|.|+|.+
T Consensus        12 ~~~~~~~~v~~G~~v~L~C~~--~~~~p~~~~v~W~~~~~~   50 (201)
T 3s97_C           12 PEERPEVRVKEGKGMVLLCDP--PYHFPDDLSYRWLLNEFP   50 (201)
T ss_dssp             SSCCCCEEEETTCCEEECCCC--CSEESSCCEEEEEESSTT
T ss_pred             cCCCceEEEECCCCEEEeccc--cccCCCceEEEEEECCce
Confidence            456688899999999999993  334444367899999865

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=96.45  E-value=0.0028  Score=37.61  Aligned_cols=34  Identities=26%  Similarity=0.353  Sum_probs=25.7

Q ss_pred             ceEEeecCCeEEEeeecC-CCCCCCCceEEEeeecccc
Q psy531           41 VHITALLGESVVFNCGVD-FPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        41 ~~ltA~vGe~VVlnCdvd-fP~~~PiPYVvqW~KdG~~   77 (80)
                      ..++++.|+.|.|.|.+. .|.  | +.-+.|.|+|..
T Consensus        16 ~~v~v~~G~~v~L~C~~~g~p~--~-~~~i~W~~~~~~   50 (122)
T 3s35_X           16 HGIELSVGEKLVLNCTARTELN--V-GIDFNWEYPSSK   50 (122)
T ss_dssp             SCEEEEETCCEEEEEEEEECTT--C-CCEEEEECSCTT
T ss_pred             CCEEEecCCeEEEEEEEEcCCC--C-cEEEEEECCCcc
Confidence            346899999999999997 442  2 245799999873

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=96.44  E-value=0.0022  Score=40.40  Aligned_cols=33  Identities=18%  Similarity=0.485  Sum_probs=26.5

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      +.| .+++..|+.|.|.|.+.-+.   ++..+.|.|+
T Consensus         6 ~~p-~~~v~~G~~v~L~C~~~~~~---~~~~v~W~k~   38 (218)
T 3s96_B            6 QSS-SASFSLGASAKLTCTLNSQH---STYTIEWYQQ   38 (218)
T ss_dssp             CCS-EEEEETTSCEEEEEEECGGG---TTCCEEEEEE
T ss_pred             eCC-cEEECCCCcEEEEEECCCCC---CCcEEEEEEE
Confidence            456 88999999999999997553   3456899995

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=96.44  E-value=0.0027  Score=42.12  Aligned_cols=34  Identities=15%  Similarity=0.267  Sum_probs=26.3

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      .+.|..+++..|+.|.|.|.+.   +.+. +.+.|.|+
T Consensus         5 ~q~p~~v~v~~G~~v~L~C~~~---~~~~-~~v~W~r~   38 (253)
T 3to4_D            5 EQNPRWRLVPRGQAVNLRCILK---NSQY-PWMSWYQQ   38 (253)
T ss_dssp             EEECSEEEEESSCCEEEEEECS---CTTC-CCEEEEEE
T ss_pred             EeCCCeEEEeCCCcEEEEEEeC---CCCc-ceEEEEEE
Confidence            4568899999999999999853   3333 45799885

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=96.43  E-value=0.0022  Score=39.11  Aligned_cols=36  Identities=19%  Similarity=0.326  Sum_probs=25.2

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +.|...++..|+.|.|.|.+.   +.|.| .+.|.|+|..
T Consensus         7 ~~~~~~~v~~G~~v~l~C~~~---~~p~~-~v~W~~~~~~   42 (189)
T 2v5t_A            7 EVVSPQEFKQGEDAEVVCRVS---SSPAP-AVSWLYHNEE   42 (189)
T ss_dssp             ECCSSEEEETTSCEEECCEEE---CSSCC-EEEEEC----
T ss_pred             ccCCCEEEeCCCcEEEEEEEc---CCCCC-EEEEEECCcc
Confidence            456677899999999999985   33444 4999998764

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=96.42  E-value=0.0021  Score=40.78  Aligned_cols=33  Identities=18%  Similarity=0.249  Sum_probs=27.9

Q ss_pred             CCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           36 DISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        36 ~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      ..+.|..+++..|+.|.|.|.+.-.      +.+.|.|+
T Consensus        20 v~q~p~~~~v~~G~~v~L~C~~~~~------~~v~W~r~   52 (133)
T 3khq_A           20 IWQHPRFAAKKRSSMVKFHCYTNHS------GALTWFRK   52 (133)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSS------SCEEEEEE
T ss_pred             eEEcCceEEEeCCCeEEEEEEeCCC------CEEEEEEe
Confidence            3567999999999999999999753      34799998

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=96.42  E-value=0.0019  Score=40.75  Aligned_cols=34  Identities=24%  Similarity=0.441  Sum_probs=27.5

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      +.|..+++..|+.|.|.|.+.-.   | +..+.|.|++
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~---~-~~~v~W~k~~   39 (213)
T 3r06_A            6 QSPSSLPASLGDRVTINCQASQD---I-SNYLNWYQQK   39 (213)
T ss_dssp             EECSEEEECTTCCEEEEEEESSC---C-TTCEEEEEEC
T ss_pred             eCCCEEEecCCCcEEEEEEeCCC---c-CceEEEEEEC
Confidence            45788999999999999998755   3 4568999853

>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system; 1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N

Probab=96.42  E-value=0.0033  Score=39.53  Aligned_cols=37  Identities=27%  Similarity=0.233  Sum_probs=28.6

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|.|..+++..|++|.|+|.+.-.. .+ .+.+.|.|+.
T Consensus         4 ~Q~p~~v~v~~G~~vtL~C~~s~~~-~~-~~~v~Wyrq~   40 (121)
T 2i24_N            4 DQTPQRITKETGESLTINCVVRDSR-CV-LSTGYWYRKP   40 (121)
T ss_dssp             EEECSEEEEETTCCEEEEEEECSCC-CC-EEEEEEEEEC
T ss_pred             EECCcEEEEecCCcEEEEeEccCCC-CC-CCEEEEEEeC
Confidence            4678899999999999999996432 12 3558999974

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=96.41  E-value=0.0033  Score=40.85  Aligned_cols=35  Identities=23%  Similarity=0.444  Sum_probs=28.3

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .+.|..+++..|+.|.|.|.+.-   .|.| .++|.|+.
T Consensus         8 ~~~p~~~~v~~G~~v~L~C~~~~---~~~~-~i~W~k~~   42 (250)
T 3esu_F            8 IQSTSSLSASLGDRVTISCRASQ---DIRN-YLNWYQQK   42 (250)
T ss_dssp             ECSCSEEEECTTCCEEEEEEESS---CCTT-CEEEEEEC
T ss_pred             EecCCEEEeeCCCcEEEEEEecc---cCCc-eEEEEEEC
Confidence            46788999999999999999863   3444 68999964

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=96.41  E-value=0.0051  Score=39.92  Aligned_cols=39  Identities=13%  Similarity=0.086  Sum_probs=28.2

Q ss_pred             CCcceEEeecCCeEEEeeecC-CCCCCCCceEEEeeeccc
Q psy531           38 SNAVHITALLGESVVFNCGVD-FPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvd-fP~~~PiPYVvqW~KdG~   76 (80)
                      ..|..+++.+|+.|.|.|.+. .|....-.+.+.|.|++.
T Consensus         8 ~~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~   47 (248)
T 3pv7_A            8 MAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSL   47 (248)
T ss_dssp             STTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECS
T ss_pred             eCCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcC
Confidence            356678899999999999994 222223356799999743

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=96.41  E-value=0.0039  Score=40.14  Aligned_cols=37  Identities=24%  Similarity=0.321  Sum_probs=30.1

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ...|+.+++..|+.|.|.|.+.   +.|.| .++|.|+|..
T Consensus        22 ~~~p~~~~v~~G~~v~L~C~~~---~~p~~-~v~W~~~~~~   58 (218)
T 3k0w_A           22 TVNPESKAVLAGQFVKLCCRAT---GHPFV-QYQWFKMNKE   58 (218)
T ss_dssp             EECCCCEEEETTSBEEEECEET---TTTSS-EEEEEETTEE
T ss_pred             EECCCCeEEeCCCcEEEEeeec---CCCCC-EEEEEECCEE
Confidence            4478889999999999999983   45544 7999999865

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=96.40  E-value=0.003  Score=38.88  Aligned_cols=37  Identities=22%  Similarity=0.163  Sum_probs=28.7

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeee-cccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEK-KIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~K-dG~~   77 (80)
                      ..|..+++..|+.|.|.|.+.-   .|++..++|.| +|..
T Consensus         7 ~~p~~~~v~~G~~v~l~C~~~~---~~~~~~v~W~~~~g~~   44 (191)
T 1epf_A            7 IVPSQGEISVGESKFFLCQVAG---DAKDKDISWFSPNGEK   44 (191)
T ss_dssp             EESSSEEEETTCCEEEEEEECC---CSCCCEEEEECTTSCE
T ss_pred             ecCCCcEEcCCCCEEEEEECCC---CCCCceEEEEeCCCcc
Confidence            3577788999999999999863   34456799999 6653

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=96.40  E-value=0.0014  Score=40.75  Aligned_cols=37  Identities=16%  Similarity=0.157  Sum_probs=26.8

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .+|..+++..|+.|.|.|.+.   +.|.|..++|.|+|..
T Consensus         9 ~~p~~~~v~~G~~v~L~C~~~---~~~~~~~i~W~~~~~~   45 (176)
T 1f2q_A            9 LNPPWNRIFKGENVTLTCNGN---NFFEVSSTKWFHNGSL   45 (176)
T ss_dssp             EESSCSEEETTCCEEEECCTT---CC----CCEEEETTEE
T ss_pred             cCCCCcceecCCcEEEEEeCC---CCCCcceEEEEECCeE
Confidence            356667899999999999885   4456666899999864

>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system; 2.35A {Mus musculus} PDB: 2e7l_C

Probab=96.39  E-value=0.0023  Score=39.75  Aligned_cols=34  Identities=18%  Similarity=0.316  Sum_probs=27.1

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .+.|..+++..|++|.|+|.++.+     .+.+.|.|+.
T Consensus         5 ~q~p~~v~v~~G~~vtL~C~~~~~-----~~~v~W~rq~   38 (121)
T 2oi9_C            5 TQSPRNKVAVTGEKVTLSCNQTNN-----HNNMYWYRQD   38 (121)
T ss_dssp             EEECSEEEEETTCCEEEEEEESSC-----CSEEEEEEES
T ss_pred             EeCCCeEEecCCCcEEEEEEecCC-----CCeEEEEEEC
Confidence            456888999999999999996432     3558999874

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=96.38  E-value=0.0023  Score=42.29  Aligned_cols=37  Identities=14%  Similarity=0.181  Sum_probs=29.0

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .+.|..+++..|+.|.|.|.+.-+. .+ .+-+.|.|+.
T Consensus         5 ~q~p~~v~~~~G~~v~L~C~~~~~~-~~-~~~v~W~r~~   41 (242)
T 1hxm_B            5 EQPQISSTKTLSKTARLECVVSGIT-IS-ATSVYWYRER   41 (242)
T ss_dssp             ECCCSEEEEETTCCEEEEEEEESSC-TT-TSCEEEEEEC
T ss_pred             CcCCceEEecCCCcEEEEEEeCCcc-cc-CceEEEEEeC
Confidence            4678999999999999999987641 12 3559999864

>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B, IG-beta, BCR, immunoglobulin domain, protein binding; 3.20A {Homo sapiens}

Probab=96.37  E-value=0.0023  Score=41.49  Aligned_cols=35  Identities=17%  Similarity=0.167  Sum_probs=29.2

Q ss_pred             CCCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           35 PDISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        35 g~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      ...+.|..+++..|++|.|+|.+.-.     .+-+.|.|+
T Consensus        20 ~v~Q~p~~~~v~~G~svtL~C~~s~~-----~~~v~Wyrq   54 (134)
T 3kg5_A           20 RIWQSPRFIARKRGFTVKMHCYMNSA-----SGNVSWLWK   54 (134)
T ss_dssp             CCEEECSEEEEETTCCEEEEEECCCT-----TCCCEEEEE
T ss_pred             EEEEeCCEEEEeCCCCEEEEEEECCC-----CceEEEEEE
Confidence            45678999999999999999998643     255899998

>3oai_A Maltose-binding periplasmic protein, myelin prote; schwann cell membrane protein, immunoglobulin-folding, inter adhesion, tetramer; HET: MAL; 2.10A {Escherichia coli}

Probab=96.37  E-value=0.0035  Score=45.33  Aligned_cols=39  Identities=10%  Similarity=0.209  Sum_probs=30.6

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      -+.|..+++.+|++|.|+|.+..|....-.+.|+|.|+.
T Consensus       389 v~~~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~  427 (507)
T 3oai_A          389 VYTDREVHGAVGSQVTLHCSFWSSEWVSDDISFTWRYQP  427 (507)
T ss_dssp             EECCSEEEEETTCCEEECCEECCSSCCCSSCEEEEEEEE
T ss_pred             EecCceEEEecCCcEEEeeEecCCCCCCCceEEEEEEcC
Confidence            346778999999999999999766444445789999863

>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*

Probab=95.36  E-value=0.00058  Score=41.10  Aligned_cols=35  Identities=17%  Similarity=0.388  Sum_probs=27.8

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|.|..+++..|++|.|.|.+.-.   + .+.+.|.|+.
T Consensus         3 ~Q~p~~v~v~~G~~v~L~C~~~~~---~-~~~v~W~r~~   37 (110)
T 1u3h_A            3 RQSPQSLTVWEGETAILNCSYENS---A-FDYFPWYQQF   37 (110)
Confidence            467899999999999999998632   2 3458999874

>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C

Probab=96.35  E-value=0.0032  Score=37.79  Aligned_cols=39  Identities=13%  Similarity=0.203  Sum_probs=28.4

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCC-CCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGD-TPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~-~PiPYVvqW~KdG   75 (80)
                      .+.|..+++..|+.|.|+|.+..... ..-.+.+.|.|+.
T Consensus         5 ~q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~rq~   44 (113)
T 1dlf_L            5 TQTPLSLPVSLGNQASISCRSSQSLVHSNGNTYLHWYLQK   44 (113)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEEC
T ss_pred             EEeCCEEEEcCCCCEEEEEEccccccccCCCceEEEEEEC
Confidence            35688899999999999999865421 0012458999874

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=96.35  E-value=0.003  Score=40.48  Aligned_cols=37  Identities=19%  Similarity=0.154  Sum_probs=29.1

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|.|..+++..|++|.|.|.+..+. .+ .+-+.|.|+.
T Consensus         4 ~Q~p~~v~v~~G~svtL~C~~s~~~-~~-~~~v~Wyrq~   40 (126)
T 3moq_A            4 DQTPRTATKETGESLTINCVLRDAS-FE-LKDTGWYRTK   40 (126)
T ss_dssp             EEECSEEEEETTCCEEEEEEEESCS-SC-CCEEEEEEEE
T ss_pred             EECCceEEEeCCCCEEEEEEeecCc-cC-CceEEEEEeC
Confidence            4678999999999999999997652 22 3457999963

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=96.33  E-value=0.0037  Score=39.50  Aligned_cols=37  Identities=16%  Similarity=0.265  Sum_probs=27.9

Q ss_pred             ceEEeecCCeEEEeeecCCCCC-CCCceEEEeeecccc
Q psy531           41 VHITALLGESVVFNCGVDFPGD-TPVPYVLQWEKKIVK   77 (80)
Q Consensus        41 ~~ltA~vGe~VVlnCdvdfP~~-~PiPYVvqW~KdG~~   77 (80)
                      +-+++.+|+.|.|.|.+.-... .+-.+.++|.|++..
T Consensus         3 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~   40 (222)
T 4i0k_A            3 DPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTK   40 (222)
T ss_dssp             CCCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTC
T ss_pred             CCEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCc
Confidence            3467899999999999886532 334578999998743

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=96.33  E-value=0.0021  Score=42.21  Aligned_cols=35  Identities=14%  Similarity=0.291  Sum_probs=27.6

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .+.|..+++..|++|.|+|.+....   - +.+.|.|+.
T Consensus        20 ~q~p~~v~v~~G~sVtL~C~~s~~~---~-~~v~Wyrq~   54 (146)
T 2yc1_B           20 TQSPATLSVSPGERATLSCRASQSV---R-SYLAWYQQK   54 (146)
T ss_dssp             EEECSEEEECTTSCEEEEEEESSCC---T-TCEEEEEEC
T ss_pred             EEeCCEEEEecCCCEEEEEEECCCC---C-CEEEEEEEC
Confidence            4568899999999999999986432   2 347999975

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=96.32  E-value=0.0024  Score=43.21  Aligned_cols=41  Identities=15%  Similarity=0.165  Sum_probs=29.7

Q ss_pred             CCCCCCcceEEeecCCeEEEeeecCCCCCC--CCceEEEeeec
Q psy531           34 SPDISNAVHITALLGESVVFNCGVDFPGDT--PVPYVLQWEKK   74 (80)
Q Consensus        34 ~g~~~~P~~ltA~vGe~VVlnCdvdfP~~~--PiPYVvqW~Kd   74 (80)
                      ....+.|..+++..|+.|.|.|.+.-....  .-+..++|.|+
T Consensus         6 ~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~   48 (264)
T 2gjj_A            6 IVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQ   48 (264)
T ss_dssp             CCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEE
T ss_pred             cceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEE
Confidence            344668999999999999999998633100  01466999986

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=96.31  E-value=0.0023  Score=39.48  Aligned_cols=37  Identities=11%  Similarity=0.175  Sum_probs=29.6

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ...|..+++..|+.|.|.|.+.   +.| +..+.|.|++..
T Consensus         8 ~~~~~~~~v~~G~~v~L~C~~~---~~p-~~~v~W~~~~~~   44 (209)
T 1nbq_A            8 HSSEPEVRIPENNPVKLSCAYS---GFS-SPRVEWKFDQGD   44 (209)
T ss_dssp             ECSCSBCCEETTCCCEEECEEE---SCS-SEEEEEEEEETT
T ss_pred             EcCCCceEEEcCCCEEEEEEEe---CCC-CcEEEEEEcCCc
Confidence            4567788899999999999987   334 456899999865

>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}

Probab=96.29  E-value=0.0049  Score=38.54  Aligned_cols=36  Identities=17%  Similarity=0.420  Sum_probs=29.1

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      -|.|..+++..|+.|.|+|.+....   -.+.+.|.|+.
T Consensus         5 ~Q~P~~~~v~~G~~vtL~C~~s~~~---~~~~v~Wyrq~   40 (129)
T 3rrq_A            5 TFSPALLVVTEGDNATFTCSFSNTS---ESFVLNWYRMS   40 (129)
T ss_dssp             EEECSEEEEETTSCEEEEEECCCCC----CEEEEEEEEE
T ss_pred             EECCCEEEEeCCCCEEEEeEecCCC---CCcEEEEeEeC
Confidence            5678999999999999999987642   24678999864

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=96.28  E-value=0.0041  Score=36.24  Aligned_cols=35  Identities=14%  Similarity=0.309  Sum_probs=27.4

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .+.|..+++..|+.|.|.|.+. +  .  | .++|.|+|..
T Consensus        12 ~~~~~~~~v~~G~~v~l~C~~~-~--~--p-~v~W~k~~~~   46 (108)
T 2dm7_A           12 TQDLKTKEASEGATATLQCELS-K--V--A-PVEWKKGPET   46 (108)
T ss_dssp             CSCCBCCEEETTSCEEEEEEBS-S--S--C-CCEEESSSSB
T ss_pred             eecCCcEEEeCCCcEEEEEEeC-C--C--C-eeEEEECCEE
Confidence            3467778899999999999985 2  2  3 3799999865

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=96.27  E-value=0.0031  Score=41.53  Aligned_cols=35  Identities=23%  Similarity=0.357  Sum_probs=29.0

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|..+++..|+.|.|.|.++   +.|.|. ++|.|+|..
T Consensus       228 ~~~~~~v~~g~~~~l~C~~~---g~p~p~-i~W~~~g~~  262 (317)
T 2y25_A          228 LPDVVTIQEGKALNLTCNVW---GDPPPE-VSWLKNEKA  262 (317)
T ss_dssp             CCSEEEEETTSBBCEEEEEE---CSSCCE-EEEEESSSE
T ss_pred             CCccEEEEcCCEEEEEEEEe---cCCCCE-EEEEECCEe
Confidence            46678899999999999987   566665 899999864

>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor, immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1

Probab=96.27  E-value=0.007  Score=37.83  Aligned_cols=38  Identities=18%  Similarity=0.275  Sum_probs=28.8

Q ss_pred             CCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           36 DISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        36 ~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      ..+.|..+++..|++|.|+|.+......  .+.+.|.|+.
T Consensus        13 ~~~~~~~v~~~~G~svtL~C~~s~~~~~--~~~v~W~rq~   50 (122)
T 1hkf_A           13 AQSKAQVLQSVAGQTLTVRCQYPPTGSL--YEKKGWCKEA   50 (122)
T ss_dssp             --CCCEEEEECTTCCEEEEEECCCCTTC--CCEEEEEEEE
T ss_pred             hccCCceEEEecCCCEEEEeEccCCCCc--ccEEEEEcCC
Confidence            3567889999999999999998754221  3468999985

>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand complex, immunoglobulin-like sandwich, T cell, B cell, programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1

Probab=96.27  E-value=0.0041  Score=39.35  Aligned_cols=37  Identities=16%  Similarity=0.318  Sum_probs=29.8

Q ss_pred             CCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           36 DISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        36 ~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      ..|.|..+++..|+.|.|+|.+....+   .+.+.|.|+.
T Consensus        12 v~Q~p~~v~v~~G~~vtL~C~~~~~~~---~~~v~Wyrq~   48 (134)
T 3bik_B           12 LTFYPAWLTVSEGANATFTCSLSNWSE---DLMLNWNRLS   48 (134)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCT---TCEEEEEEEC
T ss_pred             EEECCCeEEEeCCCCEEEEEEeCCCCC---CcEEEEEEcC
Confidence            467799999999999999999885432   2569999973

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=96.26  E-value=0.0059  Score=41.22  Aligned_cols=38  Identities=26%  Similarity=0.445  Sum_probs=29.5

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .+.|+.+++..|+.|.|.|.+.-.  .|.| .++|.|+|.+
T Consensus         7 ~~~p~~~~v~~G~~v~L~C~~~~~--~p~~-~v~W~k~~~~   44 (327)
T 2wng_A            7 IQPDKSVSVAAGESAILHCTVTSL--IPVG-PIQWFRGAGP   44 (327)
T ss_dssp             ECCCSEEEEETTSCEEECCEESCC--CSCC-CEEEEESCST
T ss_pred             EcCCCceEEecCCcEEEEEEccCc--CCCc-eEEEEECCCC
Confidence            356888999999999999998632  1333 5899999754

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=96.25  E-value=0.0029  Score=41.07  Aligned_cols=34  Identities=15%  Similarity=0.209  Sum_probs=27.0

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      .+.|..+++..|+.|.|.|.+.-.   | .+.+.|.|+
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~---~-~~~v~W~r~   38 (246)
T 4dzb_B            5 SQHPSWVISKSGTSVKIECRSLDF---Q-ATTMFWYRQ   38 (246)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSS---C-CCSEEEEEE
T ss_pred             EECCcEEEEeCCCcEEEEeEecCC---C-ceEEEEEEE
Confidence            457888999999999999988643   3 345899983

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=96.25  E-value=0.0026  Score=39.83  Aligned_cols=35  Identities=20%  Similarity=0.436  Sum_probs=27.5

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ++...++..|+.|.|.|.+.   +.|.| .+.|.|+|..
T Consensus        25 ~~~~~~v~~G~~v~L~C~~~---~~p~~-~v~W~~~~~~   59 (231)
T 3ojm_B           25 EKRLHAVPAANTVKFRCPAG---GNPMP-TMRWLKNGKE   59 (231)
T ss_dssp             CCSCEEEETTSCEEEECCEE---EESCC-EEEEEETTEE
T ss_pred             CceeEEEccCCCEEEEEecc---cCCCC-eEEEEECCcc
Confidence            34677899999999999886   44555 4999999865

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=96.25  E-value=0.0043  Score=41.20  Aligned_cols=34  Identities=18%  Similarity=0.349  Sum_probs=27.9

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      .+.|..+++..|++|.|.|.+.-.   | +..+.|.|+
T Consensus         7 ~q~p~~~~v~~G~~v~L~C~~~~~---~-~~~v~W~r~   40 (256)
T 3tf7_C            7 TQPDARVTVSEGASLQLRCKYSYS---A-TPYLFWYVQ   40 (256)
T ss_dssp             ECSCSEEEEETTSCEEECCEEECS---S-CCEEEEEEE
T ss_pred             EecCceEEecCCCeEEEEEEeCCC---C-CceEEEEEE
Confidence            467889999999999999999654   3 446899985

>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens}

Probab=96.24  E-value=0.0056  Score=38.27  Aligned_cols=35  Identities=14%  Similarity=0.270  Sum_probs=28.0

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      +.|..+++..|++|.|+|.+.....   .|.+.|.|+.
T Consensus         7 ~~p~~v~~~~G~svtL~C~~s~~~~---~~~~~W~rq~   41 (124)
T 2nms_A            7 TGPTTVNGLERGSLTVQCVYRSGWE---TYLKWWCRGA   41 (124)
T ss_dssp             ECCSEEEEETTCCEEEEEEECTTCT---TSEEEEEESS
T ss_pred             ecccEEEEeCCCCEEEEeEEeCCcc---cccEEEEeCC
Confidence            4578899999999999999875422   3679999975

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=96.24  E-value=0.0027  Score=41.69  Aligned_cols=34  Identities=21%  Similarity=0.348  Sum_probs=26.7

Q ss_pred             CcceEEeecCCeEEEeeecC-CCCCCCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVD-FPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvd-fP~~~PiPYVvqW~KdG   75 (80)
                      +|+.+++..|+.|.|.|.+. +|.+   .+.+.|.|++
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~---~~~v~W~r~~   40 (227)
T 1mju_H            6 QPGAELVKPGASVKLSCKASGYTFT---NYWINWVKQR   40 (227)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGG---GSCEEEEEEC
T ss_pred             CCCCeEEcCCCCEEEEEEecCCccc---cceEEEEEeC
Confidence            57788999999999999997 3322   3569999874

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=96.24  E-value=0.0042  Score=40.52  Aligned_cols=36  Identities=22%  Similarity=0.233  Sum_probs=28.5

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeee-cccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEK-KIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~K-dG~~   77 (80)
                      +|...++..|+.|.|.|.+.   +.|++..+.|.| +|..
T Consensus         8 ~p~~~~v~~G~~v~l~C~~~---~~~~~~~i~W~~~~g~~   44 (291)
T 1qz1_A            8 VPSQGEISVGESKFFLCQVA---GDAKDKDISWFSPNGEK   44 (291)
T ss_dssp             ESSSEEEETTCCEEEEEEES---SCCSCCEEEEECTTSCB
T ss_pred             cCCCceEeCCCeEEEEEEeC---CCCCCcEeEEECCCCeE
Confidence            57778899999999999986   344467899999 6643

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=96.22  E-value=0.0036  Score=41.28  Aligned_cols=36  Identities=14%  Similarity=0.413  Sum_probs=28.6

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .+|..+++..|+.|.|.|.+.   +.|.| .+.|.|+|..
T Consensus         9 ~~p~~~~v~~G~~v~l~C~~~---g~p~~-~v~W~~~~~~   44 (305)
T 2nzi_A            9 EELRNLNVRYQSNATLVCKVT---GHPKP-IVKWYRQGKE   44 (305)
T ss_dssp             ECCCCEEECTTCCEEEEEEEE---CSSCC-EEEEEETTEE
T ss_pred             ecccceEEeCCCcEEEEEEEe---CCCCC-eEEEEECCEE
Confidence            357778899999999999983   45544 5999999864

>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC, H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A {Mus musculus} SCOP: b.1.1.1

Probab=96.20  E-value=0.0073  Score=38.89  Aligned_cols=37  Identities=19%  Similarity=0.390  Sum_probs=29.6

Q ss_pred             CCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           36 DISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        36 ~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      ..|.|..+++..|++|.|+|.+....+   .|.+.|.|+.
T Consensus         3 v~Q~p~~v~v~~G~~vtL~C~~s~~~~---~~~v~Wyrq~   39 (142)
T 2ol3_A            3 VTQTQTSISVMEKTTVTMDCVYETQDS---SYFLFWYKQT   39 (142)
T ss_dssp             CBCCCSEEEEETTCCEEECCBCCCCCS---SCEEEEEEEC
T ss_pred             eEecCCeEEEecCCCEEEEEEecCCcC---CceEEEEEeC
Confidence            357899999999999999999875431   3569999874

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=96.20  E-value=0.0052  Score=41.85  Aligned_cols=38  Identities=11%  Similarity=0.152  Sum_probs=30.7

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..+|..+++..|+.|.|.|.+.-   ..++..++|.|+|.+
T Consensus        10 ~~~p~~~~v~~G~~v~l~C~~~~---~~p~~~v~W~k~g~~   47 (395)
T 1bih_A           10 KDQPAEVLFRENNPTVLECIIEG---NDQGVKYSWKKDGKS   47 (395)
T ss_dssp             CCCCSEEEEETTSCEEECCCEES---CCSSCEEEEEESSSB
T ss_pred             ecCCCceEEeCCCEEEEEEEEec---CCCCceEEEEECCcC
Confidence            45688899999999999999875   233456899999875

>2wzp_D Camelid VHH5; baseplate, viral protein; 2.60A {Lama glama} PDB: 2bse_D

Probab=96.20  E-value=0.0065  Score=37.05  Aligned_cols=34  Identities=12%  Similarity=0.279  Sum_probs=26.5

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |..+++..|+.|.|+|.+......  .+.+.|.|+.
T Consensus         7 p~~~~~~~G~~vtL~C~~~~~~~~--~~~v~W~rq~   40 (123)
T 2wzp_D            7 SGGGLVQAGGSLRLSCTASRRTGS--NWCMGWFRQL   40 (123)
T ss_dssp             EECEEEETTCCEEEEEEESSCCSS--SEEEEEEECC
T ss_pred             CCCEEEcCCCcEEEEEEecCCCcc--CcEEEEEEEC
Confidence            677899999999999999743111  4679999874

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=96.17  E-value=0.0033  Score=41.07  Aligned_cols=36  Identities=19%  Similarity=0.229  Sum_probs=28.8

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +|...++..|+.|.|.|.++   +.|.|.-++|.|+|..
T Consensus        13 ~p~~~~v~~G~~v~L~C~~~---~~p~~~~v~W~k~g~~   48 (204)
T 3sgj_C           13 EPQWYRVLEKDSVTLKCQGA---YSPEDQSTQWFHNESL   48 (204)
T ss_dssp             ESCCSEEETTCCEEEEEECC---SSSSCCCEEEEETTEE
T ss_pred             cCCCeEEECCCCEEEEEcCC---CCCCCcEEEEEECCEE
Confidence            45556789999999999985   4566666999999865

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=96.17  E-value=0.0026  Score=42.49  Aligned_cols=44  Identities=11%  Similarity=0.120  Sum_probs=31.0

Q ss_pred             CCCCCCCCcceEEeecCCeEEEeeecCCCCCC-CCceEEEeeecc
Q psy531           32 GVSPDISNAVHITALLGESVVFNCGVDFPGDT-PVPYVLQWEKKI   75 (80)
Q Consensus        32 g~~g~~~~P~~ltA~vGe~VVlnCdvdfP~~~-PiPYVvqW~KdG   75 (80)
                      |.....+.|..+++..|+.|.|.|.+.-.... .-+..++|.|+.
T Consensus        14 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~   58 (268)
T 1x9q_A           14 SDVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQK   58 (268)
T ss_dssp             CCCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEEC
T ss_pred             ccceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEEC
Confidence            33445678999999999999999998643110 013569999864

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=96.17  E-value=0.0038  Score=40.43  Aligned_cols=32  Identities=22%  Similarity=0.337  Sum_probs=25.1

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeee
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEK   73 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~K   73 (80)
                      .+.|..+++..|+.|.|.|....|    . +.+.|.|
T Consensus         6 ~~~p~~v~v~~G~~v~L~C~~~~~----~-~~v~W~r   37 (245)
T 4ei6_B            6 LQIPSHQIIDMGQMVTLNCDPVSN----H-LYFYWYK   37 (245)
T ss_dssp             EEECSEEEEETTCCEEEEEECCTT----C-CEEEEEE
T ss_pred             EeCCceEEecCCCCEEEEEEcCCC----C-CEEEEEE
Confidence            457888999999999999944332    2 4589998

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=96.16  E-value=0.0044  Score=37.71  Aligned_cols=37  Identities=22%  Similarity=0.260  Sum_probs=28.8

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      +|..+++..|+.|.|.|.+.-   .|.+..++|.|+|.+.
T Consensus        10 ~p~~~~v~~G~~v~l~C~~~~---~p~~~~~~W~~~g~~~   46 (170)
T 3ry4_A           10 EPPWINVLQEDSVTLTCQGAR---SPESDSIQWFHNGNLI   46 (170)
T ss_dssp             ESCCSEEETTCEEEEEEESCC---CSSSSCEEEEETTEEC
T ss_pred             CCCCeEEECCCcEEEEEEecC---CCCcceEEEEECCeEc
Confidence            466667899999999999863   3445679999998753

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=96.15  E-value=0.0037  Score=39.50  Aligned_cols=35  Identities=23%  Similarity=0.401  Sum_probs=25.9

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |..+++..|+.|.|.|.+.-......|+ +.|.|++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~-v~W~~~~   41 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRSSTGAVTTSNY-ANWVQEK   41 (212)
T ss_dssp             CSEEEECTTCCEEEEEEESSSCCCGGGC-CEEEEEE
T ss_pred             CCeEeecCCCCEEEEEEecccccCCCCe-EEEEEeC
Confidence            8889999999999999986321100243 8999874

>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold, toxin-immune system complex; 2.95A {Rattus norvegicus}

Probab=96.13  E-value=0.0029  Score=39.36  Aligned_cols=37  Identities=16%  Similarity=0.205  Sum_probs=29.5

Q ss_pred             CCCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           35 PDISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        35 g~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      ...|.|..+++..|+.|.|+|.+....    .+.+.|.|+.
T Consensus         7 ~V~Q~p~~~~v~~G~~vtL~C~~~~~~----~~~v~Wyrq~   43 (125)
T 3r8b_B            7 AVTQSPRNKVAVTGEKVTLSCKQTNSY----FNNMYWYRQD   43 (125)
T ss_dssp             EEEEECSEEEEETTCCEEEEEEEESCC----CSEEEEEEEC
T ss_pred             cEEecCCeEEEcCCCcEEEEEEECCCC----CCeEEEEEEC
Confidence            346789999999999999999987532    2469999873

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=96.13  E-value=0.0037  Score=38.65  Aligned_cols=35  Identities=29%  Similarity=0.417  Sum_probs=28.4

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|..+++..|+.|.|.|.++   +.|.| -+.|.|+|..
T Consensus       110 ~~~~~~~~~g~~~~l~C~~~---g~p~p-~i~W~~~~~~  144 (197)
T 2j8h_A          110 GMGAVHALRGEVVSIKIPFS---GKPDP-VITWQKGQDL  144 (197)
T ss_dssp             TBEEEEEETTCCCEEEEEEE---EESCC-EEEEEESSCE
T ss_pred             ccCeEEEeCCCEEEEEEEEE---ecCCC-cEEEEECCEE
Confidence            45667899999999999986   55666 6899999864

>2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A

Probab=96.13  E-value=0.0024  Score=38.59  Aligned_cols=35  Identities=17%  Similarity=0.413  Sum_probs=26.9

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .| |..+++..|++|.|+|.+....  + .+.+.|.|+.
T Consensus         6 ~q-p~~~~~~~G~~v~L~C~~~~~~--~-~~~v~W~rq~   40 (115)
T 2otu_A            6 TQ-SSSASFSLGASAKLTCTLSSQH--S-TYTIEWYQQQ   40 (115)
T ss_dssp             EE-CCCEECCTTCCEEEEEEECGGG--T-TCCEEEEEEC
T ss_pred             Ec-CCCEEECCCCCEEEEEEecCCC--C-CeEEEEEEeC
Confidence            35 8889999999999999987532  1 2348999863

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=96.12  E-value=0.0045  Score=42.55  Aligned_cols=32  Identities=13%  Similarity=0.344  Sum_probs=25.5

Q ss_pred             ceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           41 VHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        41 ~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      +.+++..|+.|.|.|.++   +. ++..++|.|+|.
T Consensus         2 e~v~~~~G~~v~L~C~~~---~~-p~~~v~W~k~~~   33 (363)
T 1wio_A            2 KVVLGKKGDTVELTCTAS---QK-KSIQFHWKNSNQ   33 (363)
T ss_dssp             EEEEEETTSCEEECCCCT---TC-SSCCEEEEETTC
T ss_pred             CeEEEeCCCeEEEEEEec---CC-CceEEEEEeCCc
Confidence            457899999999999987   33 345699999974

>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell surface receptor, triggering receptor, platelet receptor, ITIM, immune system; 1.19A {Homo sapiens}

Probab=96.12  E-value=0.0055  Score=37.69  Aligned_cols=35  Identities=17%  Similarity=0.277  Sum_probs=27.4

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      ..|..+++..|++|.|+|....-...   |.+.|.|+.
T Consensus         2 s~p~~v~~~~G~svtl~C~~s~~~~~---~~~~Wyrq~   36 (106)
T 2frg_P            2 SLPEVLQAPVGSSILVQCHYRLQDVK---AQKVWCRFL   36 (106)
T ss_dssp             CSCEEEEECTTCCEEEEEECCGGGTT---SEEEEEEEE
T ss_pred             CCCcEEEEecCCcEEEEeEecCCccc---CcEEEEECC
Confidence            35888999999999999998732222   668999874

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=96.12  E-value=0.0037  Score=40.19  Aligned_cols=33  Identities=15%  Similarity=0.356  Sum_probs=26.1

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      .+.|..+++..|+.|.|.|...    .| +..++|.|+
T Consensus         4 ~q~p~~~~v~~G~~v~L~C~~~----~~-~~~i~W~k~   36 (238)
T 2p1y_A            4 TQSPRNKVAVTGGKVTLSCNQT----NN-HNNMYWYRQ   36 (238)
T ss_dssp             EEECSEEEEETTCCEEEEEEEC----SC-CSEEEEEEE
T ss_pred             eECccceEEeCCCEEEEEeecC----CC-CccEEEEEE
Confidence            3568889999999999999933    33 346999996

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=96.11  E-value=0.0047  Score=39.17  Aligned_cols=35  Identities=23%  Similarity=0.455  Sum_probs=27.9

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|...++..|+.|.|.|.++   +.|.|. +.|.|+|..
T Consensus       116 ~~~~~~~~~g~~v~l~C~~~---g~p~p~-i~W~~~~~~  150 (212)
T 2yd1_A          116 GPGTRVIEVGHTVLMTCKAI---GNPTPN-IYWIKNQTK  150 (212)
T ss_dssp             CCCCEEEETTCCEEECCEEE---CSSCCE-EEEEETTEE
T ss_pred             CCCceEeecCCeEEEEEEec---cCCCCe-EEEEECCeE
Confidence            34456788999999999984   667775 899999865

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=96.10  E-value=0.0061  Score=39.16  Aligned_cols=34  Identities=18%  Similarity=0.544  Sum_probs=26.7

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      +.|..+++..|+.|.|.|.+.   +.|.| .+.|.|++
T Consensus       132 ~~p~~~~v~~G~~v~L~C~~~---~~p~~-~i~W~k~~  165 (238)
T 2p1y_A          132 QSPQSLTVWEGETAILNCSYE---NSAFD-YFPWYQQF  165 (238)
T ss_dssp             EECSEEEEETTSCEEEEEECC---CTTCC-EEEEEEEC
T ss_pred             ccCceEEEeCCCeEEEEEEEe---cCCCC-cEEEEEEC
Confidence            457778899999999999985   34445 48999974

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=96.10  E-value=0.005  Score=39.63  Aligned_cols=34  Identities=29%  Similarity=0.391  Sum_probs=26.5

Q ss_pred             ceEEeecCCeEEEeeecC-CCCCCCCceEEEeeecccc
Q psy531           41 VHITALLGESVVFNCGVD-FPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        41 ~~ltA~vGe~VVlnCdvd-fP~~~PiPYVvqW~KdG~~   77 (80)
                      ..+++..|+.|.|.|.+. .|   ++|+-++|.|+|.+
T Consensus       113 ~~~~v~~G~~v~L~C~~~g~p---~~~~~i~W~~~g~~  147 (213)
T 2x1w_L          113 HGIELSVGEKLVLNCTARTEL---NVGIDFNWEYPSSK  147 (213)
T ss_dssp             SCEEEETTCCEEEEEEEEECT---TBCCEEEEECSCSS
T ss_pred             CCeEEcCCCCEEEEEEEECCC---CCceEEEEEecCCc
Confidence            345789999999999997 44   23456999999875

>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*

Probab=96.09  E-value=0.0044  Score=37.69  Aligned_cols=36  Identities=19%  Similarity=0.353  Sum_probs=26.0

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |.|. +++..|++|.|+|.+...... -.+-+.|.|+.
T Consensus         6 q~~~-~~~~~G~~v~L~C~~~~~~~~-~~~~v~Wyrq~   41 (120)
T 1oaq_L            6 QESA-LTTSPGETVTLTCRSSTGAVT-TSNYANWVQEK   41 (120)
T ss_dssp             ECSE-EEECTTCEEEEEEEETTBCCC-GGGCCEEEEEE
T ss_pred             cCCc-EEEcCCCCEEEEEEeCCCccC-CCCEEEEEEeC
Confidence            4454 899999999999998754211 13458999874

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=96.07  E-value=0.0087  Score=35.31  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=24.7

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      .+..+++..|++|.|.|.+..+  .+. ..+.|.|+
T Consensus         9 ~~~~v~~~~G~~v~L~C~~~~~--~~~-~~v~W~~~   41 (110)
T 2ptt_A            9 SIPDINAYTGSNVTLKIHKDPL--GPY-RRITWLHT   41 (110)
T ss_dssp             CCCSEEEETTSCEEECSCSSCC--CSC-SEEEEEES
T ss_pred             CCCCEEEecCCcEEEeCCccCC--CCc-CEEEEEec
Confidence            3455889999999999998543  233 35899994

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=96.07  E-value=0.0029  Score=42.66  Aligned_cols=40  Identities=23%  Similarity=0.141  Sum_probs=31.1

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCC----CCCCceEEEeeecccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPG----DTPVPYVLQWEKKIVK   77 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~----~~PiPYVvqW~KdG~~   77 (80)
                      ..+|+.+++..|+.|.|.|.+..+.    +.|.| .++|.|+|..
T Consensus        22 ~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~-~v~W~k~~~~   65 (339)
T 3o4o_C           22 GRHYKREFRLEGEPVALRCPQVPYWLWASVSPRI-NLTWHKNDSA   65 (339)
T ss_dssp             EECSCCEEEETTBCCEEECTTSCSSCCSTTSSCC-BCCCEESSCC
T ss_pred             CcCceEEEEECCccEEEEeccccccccccCCCCc-eEEEEECCCC
Confidence            4577888899999999999997332    44444 6899999875

>3dmm_D T-cell surface glycoprotein CD8 beta chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus}

Probab=96.05  E-value=0.0062  Score=39.55  Aligned_cols=37  Identities=11%  Similarity=0.168  Sum_probs=29.9

Q ss_pred             CCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           36 DISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        36 ~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      ..|.|..+++..|++|.|+|.+....   -.+.+.|.|+.
T Consensus         4 v~Q~p~~~~v~~G~svtL~C~~s~~~---~~~~v~Wyrq~   40 (150)
T 3dmm_D            4 LIQTPSSLLVQTNHTAKMSCEVKSIS---KLTSIYWLRER   40 (150)
T ss_dssp             CEEECSEEEEETTSCEEEEEECCCSS---CCCEEEEEEEE
T ss_pred             cEECCCeEEEeCCCcEEEEEEecCCC---CCceEEEEEeC
Confidence            46789999999999999999987542   23669999973

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=96.04  E-value=0.0047  Score=42.05  Aligned_cols=36  Identities=14%  Similarity=0.421  Sum_probs=29.1

Q ss_pred             CCCcceEEeecCCeEEEeeecC-CCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVD-FPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvd-fP~~~PiPYVvqW~KdG   75 (80)
                      .+.|..+++..|++|.|.|.+. ++.+   .+.+.|.|+.
T Consensus         5 ~q~p~~v~v~~G~~vtL~C~~s~~~~~---~~~v~W~rq~   41 (229)
T 1hxm_A            5 VPEHQTVPVSIGVPATLRCSMKGEAIG---NYYINWYRKT   41 (229)
T ss_dssp             EESCSEEEEETTCCEEEEEEECSSCGG---GSEEEEEEEE
T ss_pred             EeCCCEEEEcCCCCEEEEeEecCCccC---cceEEEEEEC
Confidence            4678899999999999999997 5433   3569999874

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=96.03  E-value=0.0036  Score=40.31  Aligned_cols=38  Identities=16%  Similarity=0.280  Sum_probs=28.1

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      .+.|..+++..|+.|.|.|.+.-....+-+..++|.|+
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~   42 (240)
T 1moe_A            5 TQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQ   42 (240)
T ss_dssp             EEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEE
T ss_pred             EeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEE
Confidence            34688899999999999999864321112566999986

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=96.01  E-value=0.0037  Score=41.24  Aligned_cols=36  Identities=14%  Similarity=0.206  Sum_probs=29.9

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|...++..|+.|.|.|.+.   +.|.|.-++|.|+|..
T Consensus       194 ~~~~~~v~~G~~v~l~C~~~---g~p~p~~i~W~~~~~~  229 (290)
T 2o26_X          194 PETSHLLKKGDTFTVVCTIK---DVSTSVNSMWLKMNPQ  229 (290)
T ss_dssp             SCSBCCCCTTCCEEEEEEEE---ESSTTCEEEEEEESSS
T ss_pred             CCCcceEecCCcEEEEEEEe---cCCcceeEEEecCCCC
Confidence            34445689999999999997   6788888999999876

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=95.99  E-value=0.003  Score=41.18  Aligned_cols=34  Identities=21%  Similarity=0.497  Sum_probs=26.0

Q ss_pred             CcceEEeecCCeEEEeeecC-CCCCCCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVD-FPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvd-fP~~~PiPYVvqW~KdG   75 (80)
                      +|..+++..|+.|.|.|.+. +|.+   .+.+.|.|+.
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~---~~~v~W~r~~   40 (225)
T 1op3_H            6 ESGGGLVKAGGSLILSCGVSNFRIS---AHTMNWVRRV   40 (225)
T ss_dssp             EECCEEEETTCCEEEEEEEESSCGG---GSCEEEEEEC
T ss_pred             cCCCeEecCCCCEEEEEEecCcccC---CceEEEEEeC
Confidence            46678899999999999997 3422   3559999864

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=95.97  E-value=0.0071  Score=38.48  Aligned_cols=35  Identities=14%  Similarity=0.302  Sum_probs=27.7

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|...++..|+.|.|.|.+.   +.|.|- ++|.|+|..
T Consensus       114 ~~~~~~~~~g~~v~l~C~~~---g~p~p~-v~W~~~g~~  148 (212)
T 2yd6_A          114 GPQLKVVERTRTATMLCAAS---GNPDPE-ITWFKDFLP  148 (212)
T ss_dssp             CCCCEEEETTSCEEEEEEEE---CSSCCE-EEEEETTEE
T ss_pred             CCcceeEecCCCEEEEEEec---CCCCCe-EEEEECCcc
Confidence            45556788999999999984   566664 899999864

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=95.96  E-value=0.0078  Score=39.75  Aligned_cols=37  Identities=22%  Similarity=0.397  Sum_probs=29.3

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeee--ccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEK--KIV   76 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~K--dG~   76 (80)
                      .+++.+.+.+|++|.|+|.. ||.+.|+| -+.|.|  ++.
T Consensus         4 ~~~~~v~g~~G~sv~L~~~~-~~~~~~~~-~i~W~k~~~~~   42 (182)
T 1hnf_A            4 TNALETWGALGQDINLDIPS-FQMSDDID-DIKWEKTSDKK   42 (182)
T ss_dssp             CCCEEEEEETTSCEEECCTT-CCCCSSEE-EEEEEEGGGCC
T ss_pred             ccccEEEEecCCCEEEeCCc-ccccCcCC-EEEEEECCCCc
Confidence            35788999999999999953 66666665 589999  654

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=95.96  E-value=0.0062  Score=38.85  Aligned_cols=35  Identities=14%  Similarity=0.243  Sum_probs=27.6

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|..+++..|+.|.|.|.+.   +.|.| -+.|.|+|.+
T Consensus       142 ~~~~~~v~~g~~v~L~C~~~---g~p~p-~v~W~k~~~~  176 (250)
T 2fbo_J          142 TAEVVQVDEGNDITMTCPCT---DCANA-NVTWYTGPTF  176 (250)
T ss_dssp             CCSEEECCTTCCEEECCCEE---SCTTC-EEEEEEEEEC
T ss_pred             cCceEEecCCCcEEEEEEec---CCCCC-eeEEEeCCCc
Confidence            34556778899999999985   45666 8999999863

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=95.92  E-value=0.0095  Score=38.98  Aligned_cols=34  Identities=18%  Similarity=0.222  Sum_probs=25.8

Q ss_pred             CCCcceEEe-ecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           37 ISNAVHITA-LLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        37 ~~~P~~ltA-~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .+.|..++. ..|++|.|.|.+  |     +..++|.|+|..
T Consensus         6 ~~~~~~~~~~~~G~~v~L~C~~--p-----~~~i~W~k~g~~   40 (204)
T 1sy6_A            6 GNHLVKVYDYQEDGSVLLTCDA--E-----AKNITWFKDGKM   40 (204)
T ss_dssp             TTCCEEECCCCSSSEEEEEECS--C-----SSEEEEEETTEE
T ss_pred             CccceeEEeecCCCeEEEEEcC--C-----CCEEEEEECCEE
Confidence            445666664 789999999999  3     335899999864

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=95.90  E-value=0.006  Score=38.79  Aligned_cols=33  Identities=15%  Similarity=0.294  Sum_probs=25.8

Q ss_pred             cceEEeecCCeEEEeeec-CCCCCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGV-DFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdv-dfP~~~PiPYVvqW~KdG   75 (80)
                      |..+++..|+.|.|.|.+ ..+.   .+..+.|.|++
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~---~~~~v~W~k~~   40 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNI---GNNYVSWYQQL   40 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTG---GGSCCEEEEEC
T ss_pred             CCcEEecCCCeEEEEEEeecCCC---CCCeEEEEEeC
Confidence            788999999999999995 4332   23569999964

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=95.89  E-value=0.0058  Score=45.44  Aligned_cols=35  Identities=34%  Similarity=0.639  Sum_probs=27.7

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .++.+++..|+.|.|.|.++   +.|.| -++|.|+|.+
T Consensus        11 ~~~~~~v~~G~~v~L~C~~~---g~p~~-~v~W~k~g~~   45 (570)
T 3b43_A           11 PLEHVEAAIGEPITLQCKVD---GTPEI-RIAWYKEHTK   45 (570)
T ss_dssp             CCCCEEECTTSCEEEEEEEE---SSSSC-EEEEECSSSB
T ss_pred             ECCceEEcCCCEEEEEEEEc---cCCCC-EEEEEECCEE
Confidence            34557789999999999985   55554 6999999875

>2yc1_A Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_A 1dql_H 3cfi_C

Probab=95.85  E-value=0.0046  Score=37.18  Aligned_cols=34  Identities=15%  Similarity=0.200  Sum_probs=25.8

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |..+++..|+.|.|+|.+......  .+.+.|.|+.
T Consensus         7 p~~~~~~~G~~vtL~C~~~~~~~~--~~~v~Wyrq~   40 (117)
T 2yc1_A            7 SGGGLVQPGGSLRLSCTGSGFTFD--NYAMHWLRQV   40 (117)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGG--GSCEEEEEEC
T ss_pred             CCCEEEcCCCeEEEEEEecCcccC--CCeEEEEEEC
Confidence            667899999999999999743111  3558999874

>2xt1_B Camelid VHH 9; viral protein-immune system complex; 1.32A {Vicugna pacos} PDB: 2xv6_B 2xxc_B 2xxm_B

Probab=95.84  E-value=0.0078  Score=37.20  Aligned_cols=34  Identities=15%  Similarity=0.171  Sum_probs=26.1

Q ss_pred             CcceEEeecCCeEEEeeecC-CCCCCCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVD-FPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvd-fP~~~PiPYVvqW~KdG   75 (80)
                      .|..+++..|++|.|+|.+. ++.+   .+.+.|.|+.
T Consensus         8 qp~~~~v~~G~~vtL~C~~s~~~~~---~~~v~Wyrq~   42 (121)
T 2xt1_B            8 ESGGGLVQAGGSLRLSCAASGSFFM---SNVMAWYRQA   42 (121)
T ss_dssp             EECCEEEETTCCEEEEEEEESSSCC---CSEEEEEEEC
T ss_pred             cCCCEEEeCCCCEEEEEEecCeecc---CceEEEEEEC
Confidence            36678999999999999996 3322   3559999864

>3bdb_A Novel immune-type receptor 11; immunoglobulin variable domain-like beta-sandwich, stalk region, immune system; 2.80A {Ictalurus punctatus}

Probab=95.84  E-value=0.0029  Score=40.17  Aligned_cols=36  Identities=22%  Similarity=0.339  Sum_probs=28.0

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|.|..+++..|+.|.|+|.+.....   .+.+.|.|+.
T Consensus         3 ~q~p~~v~v~~G~~vtL~C~~s~~~~---~~~v~Wyrq~   38 (137)
T 3bdb_A            3 IKELHVKTVKRGENVTMECSMSKVTN---KNNLAWYRQS   38 (137)
T ss_dssp             CCBCEECCCCTTCEECCCCBCTTCCC---GGGBEEEEEC
T ss_pred             cCCCCeEEEcCCCCEEEEeecCCCcC---cceEEEEEEC
Confidence            46788999999999999999863222   3458999874

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=95.82  E-value=0.0045  Score=43.03  Aligned_cols=35  Identities=11%  Similarity=0.405  Sum_probs=28.4

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCc---eEEEeeecc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVP---YVLQWEKKI   75 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiP---YVvqW~KdG   75 (80)
                      +.|..+++..|+.|.|.|.+.   +.|.|   +.+.|.|++
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~---~~~~~~~~~~v~W~k~~   43 (438)
T 1qgc_4            6 QSPASLAVSLGQRATISCRAS---ESVDSSGHSFMHWYQQK   43 (438)
T ss_dssp             EECSEEEECTTSCEEEEEEES---SCCEETTEECEEEEEEC
T ss_pred             ecCCeEEeeCCCCEEEEEecC---CCcccCCcceEEEEEEC
Confidence            458889999999999999964   44555   679999973

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=95.81  E-value=0.0091  Score=36.96  Aligned_cols=37  Identities=24%  Similarity=0.538  Sum_probs=28.3

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..|...++..|+.|.|.|.+.  .+.|.| -++|.|+|..
T Consensus       116 ~~~~~~~~~~g~~~~l~C~~~--~~~p~~-~v~W~~~~~~  152 (212)
T 2v9r_A          116 QNPSDVMVAVGEPAVMECQPP--RGHPEP-TISWKKDGSP  152 (212)
T ss_dssp             BCCCCEEEETTSCEEEECBCC--CEESCC-EEEEEETTEE
T ss_pred             eCCCceEecCCCcEEEEEecC--CCCCCC-EEEEEECCcc
Confidence            356667899999999999872  345555 5899999864

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=95.81  E-value=0.0051  Score=37.76  Aligned_cols=34  Identities=18%  Similarity=0.293  Sum_probs=26.8

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      |...++..|+.|.|.|.+.   +.|.|. ++|.|+|..
T Consensus       110 ~~~~~~~~g~~~~l~C~~~---g~p~~~-v~W~~~~~~  143 (194)
T 2a38_A          110 LQSMTVRQGSQVRLQVRVT---GIPTPV-VKFYRDGAE  143 (194)
T ss_dssp             CCCEEECTTEEEEEEEEEE---EESCCE-EEEEETTEE
T ss_pred             CccEEEcCCCEEEEEEEEE---EecCCe-EEEEECCEE
Confidence            3446789999999999984   456665 999999864

>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble protein, KD, protein engineering, immunotherapy, immune-suppressor, immune system; 2.10A {Homo sapiens} PDB: 1akj_D 1cd8_A 3qzw_G 2q3a_A

Probab=95.81  E-value=0.0048  Score=37.69  Aligned_cols=35  Identities=23%  Similarity=0.278  Sum_probs=27.6

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      .+.|..+++..|+.|.|+|.+.-..+   .+-+.|.|+
T Consensus         4 ~q~p~~v~v~~G~~vtL~C~~~~~~~---~~~v~Wyrq   38 (114)
T 2hp4_A            4 RVSPLDRTWNLGETVELKCQVLLSNP---TSGASWLFQ   38 (114)
T ss_dssp             EEECCSCCCCTTCCEEEEEEECCSSC---CSCEEEEEE
T ss_pred             EeCCCEEEEcCCCCEEEEEEeecCCC---CceEEEEEE
Confidence            46788899999999999999874322   244899886

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=95.78  E-value=0.0069  Score=39.42  Aligned_cols=36  Identities=11%  Similarity=0.364  Sum_probs=27.4

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCC----ceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPV----PYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~Pi----PYVvqW~KdG   75 (80)
                      .+.|..+++..|+.|.|.|.+.   +.|+    ...+.|.|++
T Consensus        42 ~~~p~~~~v~~G~~v~L~C~~~---~~~~~~~~~~~v~W~k~~   81 (254)
T 2c1o_A           42 TQSPLTLSVTIGQPASISCKSS---QSLLYSNGKTYLNWLLQR   81 (254)
T ss_dssp             EEECSEEEECTTSCEEEEEEES---SCCBCSSSCBCEEEEEEC
T ss_pred             EeCCceEEecCCCcEEEEeecc---CcccccCCCCceEEEEeC
Confidence            4568889999999999999975   3332    2559999853

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=95.77  E-value=0.0064  Score=38.72  Aligned_cols=33  Identities=21%  Similarity=0.370  Sum_probs=25.4

Q ss_pred             CcceEEeecCCeEEEeeecC-CCCCCCCceEEEeeec
Q psy531           39 NAVHITALLGESVVFNCGVD-FPGDTPVPYVLQWEKK   74 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvd-fP~~~PiPYVvqW~Kd   74 (80)
                      .|+.+++..|+.|.|.|.+. +|.   ..+.+.|.|+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~---~~~~v~W~k~   39 (219)
T 1c1e_H            6 QSGPELKKPGETVKISCKASGYMF---TNYGMNWVKQ   39 (219)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCG---GGSEEEEEEE
T ss_pred             CCCCeEecCCCcEEEEEEEeCccc---ccceEEEEEe
Confidence            46667899999999999987 221   2356899997

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=95.76  E-value=0.022  Score=35.63  Aligned_cols=35  Identities=20%  Similarity=0.114  Sum_probs=25.1

Q ss_pred             CcceEEeecCCeEEEeeecCCCCC-CCCceEEEeee
Q psy531           39 NAVHITALLGESVVFNCGVDFPGD-TPVPYVLQWEK   73 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~-~PiPYVvqW~K   73 (80)
                      .|+.+++..|+.|.|.|.+.-... ..-...++|.|
T Consensus         8 p~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k   43 (202)
T 3bp6_B            8 PKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQK   43 (202)
T ss_dssp             SCSEEEEETTSCEEEEEEECTTC---CTTEEEEEEE
T ss_pred             CCcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEc
Confidence            455788999999999999864311 11126799999

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=95.76  E-value=0.0086  Score=39.33  Aligned_cols=35  Identities=20%  Similarity=0.369  Sum_probs=28.6

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      .+.|..+++..|+.|.|.|.+.-   .|.|+.+.|.|+
T Consensus       145 ~~~p~~~~v~~G~~v~L~C~~~~---~~~~~~v~W~k~  179 (257)
T 3gkz_A          145 TQSPAIMSASPGEKVTLTCSASS---SVSSSHLYWYQQ  179 (257)
T ss_dssp             ECSCSEEEECTTCCEEEEEEESS---CCCGGGEEEEEE
T ss_pred             EcCCceEEEeCCCcEEEEEEEcc---CccceEEEEEEE
Confidence            35677888999999999999864   566767999985

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=95.76  E-value=0.0051  Score=41.25  Aligned_cols=35  Identities=20%  Similarity=0.349  Sum_probs=26.8

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCC-CceEEEeeecc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTP-VPYVLQWEKKI   75 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~P-iPYVvqW~KdG   75 (80)
                      +.|..+++..|+.|.|.|.+.   +.| .++.+.|.|++
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~---g~~~~~~~v~W~r~~   40 (256)
T 1nqb_A            5 QQSGAELVKPGASVKLSCKAS---GYTFTSYWMHWVKQR   40 (256)
T ss_dssp             EECCCEEECTTCCEEEEEEEC---SSCGGGSCEEEEEEE
T ss_pred             ECCCCeeecCCCcEEEEEEec---cccCCCceEEEEEEC
Confidence            356778999999999999974   333 24679999963

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=95.74  E-value=0.0084  Score=38.75  Aligned_cols=34  Identities=12%  Similarity=0.183  Sum_probs=26.0

Q ss_pred             CcceEEeecCCeEEEeeecCC-CCCCCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVDF-PGDTPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdf-P~~~PiPYVvqW~KdG   75 (80)
                      .|+.+++..|+.|.|.|.+.- |.+   .+.+.|.|+.
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~---~~~v~W~r~~   40 (215)
T 1c5d_H            6 ESGPGLVQPSQTLSLTCTVSGFPLT---TNGVSWVRQP   40 (215)
T ss_dssp             EECCCEECTTCCEEEEEEECSSCTT---SCCEEEEEEC
T ss_pred             cCCCeeecCCCcEEEEEEECCCcCC---CCeEEEEEEC
Confidence            367788999999999999873 222   3569999873

>3b9v_A Heavy chain variable domain; antibody engineering, phage display, immune system; 1.80A {Homo sapiens} PDB: 1fvc_B 3p9w_B 1fgv_H 2vh5_H*

Probab=95.74  E-value=0.0066  Score=36.73  Aligned_cols=34  Identities=12%  Similarity=0.128  Sum_probs=26.0

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |..+++..|+.|.|+|.+......  .+.+.|.|+.
T Consensus         7 p~~~~~~~G~~vtL~C~~~~~~~~--~~~v~W~rq~   40 (120)
T 3b9v_A            7 SGGGLVQPGGSLRLSCAASGFNIK--DTYIGWVRRA   40 (120)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGG--GSEEEEEEEC
T ss_pred             CCCEEEeCCccEEEEEEeeCcccc--ccEEEEEEEC
Confidence            667899999999999999642111  3569999874

>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}

Probab=95.74  E-value=0.006  Score=39.78  Aligned_cols=35  Identities=14%  Similarity=0.287  Sum_probs=28.3

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|.|..+++..|++|.|+|.+....    .+.+.|.|+.
T Consensus         4 ~Q~p~~v~v~~G~~vtL~C~~s~~~----~~~v~Wyrq~   38 (143)
T 3u6r_L            4 TQSPATLSLSPGERATLSCRASQSV----NKYLAWYQQK   38 (143)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCC----TTCEEEEEEC
T ss_pred             EECCCEEEEeCCCCEEEEEEECCCC----ceeeEEEEEC
Confidence            4678899999999999999987642    3458999973

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=95.74  E-value=0.0049  Score=39.60  Aligned_cols=35  Identities=11%  Similarity=0.116  Sum_probs=25.9

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|..+++..|+.|.|.|.+.-. . ...+.+.|.|+.
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~-~-~~~~~v~W~r~~   40 (221)
T 3m8o_H            6 ESGGGLVQPGGSLKLSCAASGF-T-LSGSNVHWVRQA   40 (221)
T ss_dssp             EESCEEECTTCCEEEEEEEESS-C-GGGSEEEEEEEC
T ss_pred             ccCCEEEcCCCCEEEEEEcccc-c-ccccEEEEEEEC
Confidence            4666889999999999999732 1 123678999853

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=95.73  E-value=0.0066  Score=38.84  Aligned_cols=35  Identities=14%  Similarity=0.147  Sum_probs=26.6

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|+.+++..|+.|.|.|.+.-+..  -.+.+.|.|++
T Consensus         6 ~p~~~~~~~G~~v~L~C~~~~~~~--~~~~v~W~r~~   40 (220)
T 1pz5_B            6 ESGGGLVQPGGSMKLSCVASGFTF--SNYWMEWVRQS   40 (220)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCG--GGSEEEEEEEE
T ss_pred             ccCCEEEcCCCeEEEEEEEcCCcc--CCccEEEEEeC
Confidence            467789999999999999974311  13568999974

>1kxv_C Camelid VHH domain CAB10; beta 8 alpha 8, beta barrel, hydrolase, immune system; 1.60A {Camelus dromedarius} SCOP: b.1.1.1

Probab=95.72  E-value=0.011  Score=36.08  Aligned_cols=33  Identities=18%  Similarity=0.282  Sum_probs=25.7

Q ss_pred             cceEEeecCCeEEEeeecC-CCCCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGVD-FPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvd-fP~~~PiPYVvqW~KdG   75 (80)
                      |..+++..|+.|.|+|.+. .+.+   .+.+.|.|+.
T Consensus         7 ~~~~~~~~G~~vtL~C~~~~~~~~---~~~v~Wyrq~   40 (121)
T 1kxv_C            7 SGGGTVPAGGSLRLSCAASGNTLC---TYDMSWYRRA   40 (121)
T ss_dssp             ECCEEECTTCCEEEEEEEESCTTC---CEEEEEEEEC
T ss_pred             CCCEEEcCCCcEEEEEEecCCCcC---ceEEEEEEeC
Confidence            5678999999999999986 2222   3679999873

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=95.72  E-value=0.0076  Score=38.44  Aligned_cols=30  Identities=13%  Similarity=0.111  Sum_probs=23.7

Q ss_pred             EEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        43 ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .++..|+.|.|.|..+.|    .| .++|.|+|..
T Consensus        17 ~~v~~G~~v~L~C~~~~~----~~-~~~w~k~g~~   46 (201)
T 1nkr_A           17 PLVKSEETVILQCWSDVM----FE-HFLLHREGMF   46 (201)
T ss_dssp             SEEETTCCEEEEEEESSC----CS-EEEEEEESSS
T ss_pred             CccCCCCcEEEEEeccCC----CC-EEEEEECCCc
Confidence            457899999999998743    23 5899999864

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=95.71  E-value=0.0096  Score=39.06  Aligned_cols=32  Identities=16%  Similarity=0.200  Sum_probs=27.4

Q ss_pred             EEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        43 ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .++..|+.|.|.|.+.   +.|.|..++|.|+|.+
T Consensus       231 ~~v~~G~~~~l~C~~~---~~p~~~~v~W~~~g~~  262 (312)
T 2y23_A          231 WEVTGECNVLLKCKVA---NIKKETHIVWYKDERE  262 (312)
T ss_dssp             EEEETTTEEEEEEEEE---SCCSSCEEEEEETTEE
T ss_pred             EEEeCCCEEEEEEEEc---CCCCCCEEEEeeCCEE
Confidence            6789999999999984   6677767999999865

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.69  E-value=0.0061  Score=39.54  Aligned_cols=37  Identities=14%  Similarity=0.120  Sum_probs=27.4

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      ++|..+++..|+.|.|.|.+.=..+.| ...|.|.|++
T Consensus        17 ~~P~~v~V~eG~~v~L~C~v~g~~~~p-~P~V~W~Kgk   53 (118)
T 2edn_A           17 KKPDSVSVETGKDAVVVAKVNGKELPD-KPTIKWFKGK   53 (118)
T ss_dssp             BCCCCCEEETTSCEECCEEEETTTSSS-CCCCEEEETT
T ss_pred             ECCCCeEEeCCCCEEEEEEEeccCCCC-CCcEEEeeCC
Confidence            478889999999999999997211112 2359999963

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=95.69  E-value=0.009  Score=37.56  Aligned_cols=37  Identities=30%  Similarity=0.548  Sum_probs=28.2

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..|...++..|+.|.|.|.+  +.+.|.|- ++|.|+|.+
T Consensus       113 ~~~~~~~~~~g~~v~l~C~~--~~g~p~~~-v~W~~~g~~  149 (217)
T 2vr9_A          113 VEPKDTRVAKGETALLECGP--PKGIPEPT-LIWIKDGVP  149 (217)
T ss_dssp             BCCCCEEECTTSCEEECCBC--CCEESCCE-EEEEETTEE
T ss_pred             ECCCccEEcCCCeEEEEEEC--CCCCCCCe-EEEEECCcC
Confidence            35666778999999999987  23455554 899999864

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=95.69  E-value=0.01  Score=38.76  Aligned_cols=36  Identities=11%  Similarity=0.315  Sum_probs=26.8

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      ..|..+++..|+.|.|.|.+.-..  .+...++|.|+.
T Consensus         7 ~~p~~~~v~~G~~v~L~C~~~~~~--~~~~~v~W~r~~   42 (256)
T 3ux9_B            7 TQPPSVSGAPGQRVTISCSGSSSN--IGSNYVSWYQQL   42 (256)
T ss_dssp             BCCSEEEECTTCCEEEEEECCTTT--TTTSCCEEEEEC
T ss_pred             ecCCcEEEcCCCcEEEEEecCCCC--CCCceEEEEEEC
Confidence            356678999999999999987531  123458999863

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=95.69  E-value=0.012  Score=38.01  Aligned_cols=33  Identities=15%  Similarity=0.205  Sum_probs=25.2

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      +++.++|.+|++|.|.|.+.-|...   ..++|.|.
T Consensus         5 ~~~~v~v~~G~~vtL~c~~~~~~~~---~~i~W~k~   37 (180)
T 2dru_A            5 SVPNVNAITGSNVTLTILKHPLASY---QRLTWLHT   37 (180)
T ss_dssp             SCCEEEEETTSCEEECCCSSCCCSC---SEEEEESS
T ss_pred             ccceEEEEeCCCEEEeCCCCCCCce---eEEEEEec
Confidence            4567889999999999998544322   45899984

>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule, IGV, immunoglobulin variable, IGC, immunoglobulin constant, signaling protein; 2.04A {Homo sapiens}

Probab=95.68  E-value=0.012  Score=36.62  Aligned_cols=34  Identities=29%  Similarity=0.589  Sum_probs=25.1

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeee
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEK   73 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~K   73 (80)
                      +.+|+-+.+.+||+|.|+|++...  ..+ ..+.|.+
T Consensus         3 ~~~p~~V~~~~G~sVtL~c~~~~~--~~~-~~i~W~~   36 (111)
T 2pkd_A            3 DSEIFTVNGILGESVTFPVNIQEP--RQV-KIIAWTS   36 (111)
T ss_dssp             --CCEEEEEETTSCEEECCCCCTT--CCE-EEEEEES
T ss_pred             CCCceEEEEEeCCCEEEeCccCCC--Cee-eEEEEec
Confidence            568999999999999999998632  222 3688984

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=95.66  E-value=0.011  Score=38.96  Aligned_cols=37  Identities=14%  Similarity=0.258  Sum_probs=28.9

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .+.|..+++..|+.|.|.|.+.... . ..+.+.|.|+.
T Consensus         5 ~q~p~~v~~~~G~~v~L~C~~~~~~-~-~~~~v~W~r~~   41 (230)
T 1ypz_F            5 EQPEISISRPRDETAQISCKVFIES-F-RSVTIHWYRQK   41 (230)
T ss_dssp             ECSCSEEEEETTSCEEEEEEECCGG-G-GGCCEEEEEEC
T ss_pred             cccCCEEEEeCCCcEEEEEEeeccc-c-CccEEEEEEEC
Confidence            5678999999999999999997542 1 13559999864

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=95.66  E-value=0.0065  Score=43.89  Aligned_cols=37  Identities=24%  Similarity=0.400  Sum_probs=29.9

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      ..|..++++.|+.|.|.|.++   |.|.|. +.|.|+|...
T Consensus       390 ~~~~~~~v~~G~~v~l~C~~~---g~P~p~-i~W~~~~~~~  426 (477)
T 2id5_A          390 RKAQQVFVDEGHTVQFVCRAD---GDPPPA-ILWLSPRKHL  426 (477)
T ss_dssp             CSCEEEEEETTCCEEECCCEE---EESCCE-EEEECTTSCB
T ss_pred             cccccEEEeCCCeEEEEEecc---ccCCCE-EEEEECCccc
Confidence            356788999999999999986   566666 7899998653

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=95.65  E-value=0.01  Score=38.70  Aligned_cols=32  Identities=28%  Similarity=0.548  Sum_probs=26.4

Q ss_pred             eEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           42 HITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        42 ~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..++..|+.|.|.|.+.   +.|.|. ++|.|+|..
T Consensus       203 ~~~~~~g~~~~l~C~~~---g~p~p~-v~W~~~g~~  234 (291)
T 2wim_A          203 NATAERGEEMTFSCRAS---GSPEPA-ISWFRNGKL  234 (291)
T ss_dssp             ECCSSSCCEEEEECBCC---CBSCCE-EEEEETTEE
T ss_pred             cceecCCCeEEEEEEee---cCCCCe-EEEEECCEE
Confidence            45688999999999984   667776 899999864

>1yc7_A Anti-VSG immunoglobulin heavy chain variable domain caban33; antibody, camel antibody, immune system; 1.60A {Camelus dromedarius} PDB: 1yc8_A 1yzz_A

Probab=95.65  E-value=0.011  Score=36.88  Aligned_cols=34  Identities=18%  Similarity=0.289  Sum_probs=26.6

Q ss_pred             CcceEEeecCCeEEEeeecCC-CCCCCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVDF-PGDTPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdf-P~~~PiPYVvqW~KdG   75 (80)
                      .|..+++..|+.|.|+|.+.- +.+   .+.+.|.|+.
T Consensus         6 qp~~~~~~~G~~vtL~C~~s~~~~~---~~~v~Wyrq~   40 (124)
T 1yc7_A            6 ESGGGSVQAGGSLRLSCAVSGSTYS---PCTTGWYRQA   40 (124)
T ss_dssp             EECCEEECTTCCEEEEEEEESCCSS---CEEEEEEEEC
T ss_pred             CCCCEEEecCCCEEEEEEEeCCCcC---CCEEEEEEEC
Confidence            367789999999999999962 322   4669999874

>2p45_B Antibody CAB-RN05; seMet phasing, camelid single-domain antibody, VHH, RNAse A, yeast surface display, hydrolase/immune system complex; 1.10A {Camelus dromedarius} PDB: 2p46_B 2p47_B 2p48_B 2p44_B 2p49_B 2p42_B 2p43_B 1bzq_K 3qsk_B 2p4a_B 1op9_A 1sjx_A 3qxt_A* 3qxu_A 3eba_A

Probab=95.64  E-value=0.011  Score=35.98  Aligned_cols=34  Identities=12%  Similarity=0.113  Sum_probs=25.4

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |..+++..|+.|.|+|.+.-... . .+.+.|.|+.
T Consensus         9 ~~~~~~~~G~~vtL~C~~~~~~~-~-~~~v~Wyrq~   42 (123)
T 2p45_B            9 SGGGLVQAGGSLRLSCAASGYAY-T-YIYMGWFRQA   42 (123)
T ss_dssp             ECCEEEETTCCEEEEEEEESCSS-C-CSEEEEEEEC
T ss_pred             cCCEEEeCCCCEEEEEEecCccC-c-CcEEEEEEEC
Confidence            45688999999999999964211 1 3568999874

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=95.64  E-value=0.0059  Score=42.72  Aligned_cols=35  Identities=20%  Similarity=0.455  Sum_probs=27.1

Q ss_pred             CcceEEe---ecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITA---LLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA---~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +|.....   ..|+.|.|.|.+.   |.|.| .++|.|+|.+
T Consensus        11 ~P~~~~~~~~~eg~~v~L~C~~~---g~P~p-~i~W~k~g~~   48 (384)
T 3kld_A           11 EPSHVMFPLDSEEKKVKLSCEVK---GNPKP-HIRWKLNGTD   48 (384)
T ss_dssp             CCCCEEEETTCSCSEEEECCEEE---EESCC-EEEEEETTEE
T ss_pred             CCcceEeecCCCCCeEEEEeEec---CCCCC-EEEEEECCEE
Confidence            5555543   6789999999985   66666 6899999875

>1sjv_A R9; camelids antibody, domain swapping, heavy chain antibody, AN; 1.94A {Lama glama} SCOP: b.1.1.1

Probab=95.64  E-value=0.0057  Score=36.72  Aligned_cols=34  Identities=15%  Similarity=0.157  Sum_probs=23.9

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |..+++..|+.|.|+|.+.-... . .+.+.|.|+.
T Consensus         7 ~~~~~~~~G~~vtL~C~~~~~~~-~-~~~v~W~rq~   40 (114)
T 1sjv_A            7 SGGGLVQAGESLKLSCAASGNTF-S-GGFMGWYRQA   40 (114)
T ss_dssp             -CCCCCCTTCCEEEEECCCC-------CCEEEEEEC
T ss_pred             CCCEEEcCCCCEEEEEEEcCccc-c-CCeEEEEEEC
Confidence            66788999999999999863211 1 3458999874

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=95.64  E-value=0.0021  Score=41.53  Aligned_cols=32  Identities=13%  Similarity=0.128  Sum_probs=24.6

Q ss_pred             eecCCeEEEeeecC-CCCCCCCceEEEeeecccc
Q psy531           45 ALLGESVVFNCGVD-FPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        45 A~vGe~VVlnCdvd-fP~~~PiPYVvqW~KdG~~   77 (80)
                      +.+|+.|.|.|.+. +| ..|.++-++|.|+|..
T Consensus        15 v~~G~~v~L~C~~~g~~-~~p~~~~v~W~k~~~~   47 (207)
T 2vol_A           15 LTITLTPKVTCVVVDIS-KDDPEVQFSWFVDDVE   47 (207)
T ss_dssp             HSTTSCCEEEEEEEEEC-TTCCCCEEEEEETTEE
T ss_pred             hccCCceEEEEEEeCcc-cCCCceEEEEEECCcc
Confidence            78999999999996 21 1244678999999854

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=95.63  E-value=0.005  Score=40.60  Aligned_cols=37  Identities=14%  Similarity=0.218  Sum_probs=27.8

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .+.|..+++..|++|.|.|.+.-.  ....+.++|.|+.
T Consensus        10 ~~~~~~~~v~~G~~v~L~C~~~~~--~~~~~~v~W~r~~   46 (256)
T 3juy_B           10 LVQSGAEVKKPGASVKVSCQASGY--RFSHFTVHWVRQA   46 (256)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESS--CGGGSCEEEEEEC
T ss_pred             EEecCCceecCCCeEEEEEEeecc--cccCceEEEEEEC
Confidence            456788999999999999998642  1234568999853

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=95.63  E-value=0.013  Score=42.64  Aligned_cols=38  Identities=13%  Similarity=0.138  Sum_probs=29.6

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      ..|+.+++..|+.|.|.|.+.-. ..|.++.+.|.|+|.
T Consensus         5 ~~P~~v~v~~G~~v~L~C~~~~~-~~~~~~~v~W~k~~~   42 (585)
T 2ocw_A            5 FGPEEVNSVEGNSVSITCYYPPT-SVNRHTRKYWCRQGA   42 (585)
T ss_pred             cCcceeEEecCCcEEEEEeCCCC-cCCCcccEEEEeCCC
Confidence            46888999999999999998632 223346799999975

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=95.61  E-value=0.0087  Score=38.48  Aligned_cols=35  Identities=23%  Similarity=0.505  Sum_probs=27.7

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|...++..|+.|.|.|.+   .+.|.|- ++|.|+|..
T Consensus       124 ~~~~~~v~~G~~v~L~C~~---~g~p~~~-v~W~~~~~~  158 (218)
T 3k0w_A          124 EPTSQKLMPGSTLVLQCVA---VGSPIPH-YQWFKNELP  158 (218)
T ss_dssp             CCCCEEECTTCCEEEECEE---EBSSCCE-EEEEETTEE
T ss_pred             CCCceeecCCCcEEEEEEe---cccCCCe-EEEEECCEE
Confidence            4555778999999999999   3556554 999999865

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=95.60  E-value=0.011  Score=36.13  Aligned_cols=35  Identities=14%  Similarity=0.191  Sum_probs=28.0

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .+...++..|+.+.|.|.+.   +.|.|. +.|.|+|..
T Consensus       109 ~~~~~~~~~g~~~~l~C~~~---~~p~p~-v~W~~~~~~  143 (197)
T 3lcy_A          109 LKEKYYGAVGSTLRLHVMYI---GRPVPA-MTWFHGQKL  143 (197)
T ss_dssp             CCSEEEEETTSCEEEEEEEE---EESCCE-EEEEETTEE
T ss_pred             CCcceeecCCCeEEEEEEEe---eeeCCe-eEEeECCEE
Confidence            34567789999999999985   667774 899998864

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=95.58  E-value=0.014  Score=38.32  Aligned_cols=38  Identities=21%  Similarity=0.198  Sum_probs=28.8

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      -++|+.+++..|+.|.|.|.+.=..+. +...|+|.|++
T Consensus        11 ~~~P~~v~V~eG~~v~L~C~v~g~~~~-p~P~V~W~Kgk   48 (126)
T 2dav_A           11 IEKPQGGTVKVGEDITFIAKVKAEDLL-RKPTIKWFKGK   48 (126)
T ss_dssp             CSCCCCCEEETTCCEEEEEEEECCCSS-SCCEEEEEESS
T ss_pred             EEcCCCeEEeCCCCEEEEEEEeccCCC-CCCcEEEeeCc
Confidence            568999999999999999999721112 23459999963

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=95.57  E-value=0.019  Score=35.44  Aligned_cols=33  Identities=27%  Similarity=0.372  Sum_probs=26.0

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeee
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEK   73 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~K   73 (80)
                      ...|..+++..|+.|.|.|.+.-.   |. ..++|.|
T Consensus        42 ~~~p~~~~v~~G~~v~L~C~~~~~---~~-~~i~W~~   74 (145)
T 1z9m_A           42 QPWTSDETVVAGGTVVLKCQVKDH---ED-SSLQWSN   74 (145)
T ss_dssp             CCBCCCEEEETTSCEEEEEECSCC---TT-CCEEEEC
T ss_pred             ecCCceEEEEcCCCEEEEEEEcCC---CC-cEEEEEC
Confidence            457888999999999999998633   32 4589994

>3osk_A Cytotoxic T-lymphocyte protein 4; beta sandwich, homodimer, immunoglobulin superfamily (beta S fold, receptor, signalling, B7-1(CD80), B7-2(CD86); HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 PDB: 2x44_D 1i85_C 1ah1_A* 1i8l_C* 3bx7_C

Probab=95.57  E-value=0.019  Score=35.86  Aligned_cols=37  Identities=16%  Similarity=0.154  Sum_probs=28.7

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|.| .+++..|++|.|+|.+..... .-.+-+.|.|+.
T Consensus         6 ~Q~~-~~~~~~G~~vtL~C~~s~~~~-~~~~~v~Wyrq~   42 (130)
T 3osk_A            6 AQPA-VVLASSRGIASFVCEYASPGK-ATEVRVTVLRQA   42 (130)
T ss_dssp             ECCS-EEECCTTSCEEEEEEECCCSS-CCEEEEEEEEEE
T ss_pred             EcCC-EEEEeCCCeEEEEEEecCCCC-CceEEEEEEEeC
Confidence            4556 899999999999999987632 124679999874

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=95.56  E-value=0.005  Score=40.91  Aligned_cols=39  Identities=15%  Similarity=0.170  Sum_probs=28.7

Q ss_pred             CCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           36 DISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        36 ~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +..+...++++.|+.|.|.|.+.-+   |.+..+.|.|+|..
T Consensus         8 ~~~~~~~~~v~~G~~v~L~C~~~~~---~~~~~v~W~k~~~~   46 (315)
T 1itb_B            8 EREEKIILVSSANEIDVRPCPLNPN---EHKGTITWYKDDSK   46 (315)
T ss_dssp             CBCCCCCCEEETTSCCCCBCCCCSC---CCSSCCCEECTTSC
T ss_pred             hhcCceEEEEcCCCcEEEEeeccCc---CCCceEEEEeCCCc
Confidence            3444457789999999999998644   32237999999853

>1j05_H T84.66 antibody, anti-CEA MAB T84.66, heavy chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1dvf_D 1mvu_B 1ap2_B 2ap2_B

Probab=95.56  E-value=0.0099  Score=36.12  Aligned_cols=35  Identities=17%  Similarity=0.134  Sum_probs=25.8

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|..+++..|+.|.|+|.+.-...  -.+.+.|.|+.
T Consensus         6 qp~~~~~~~G~~vtL~C~~~~~~~--~~~~v~Wyrq~   40 (121)
T 1j05_H            6 QSGAELVEPGASVKLSCTASGFNI--KDTYMHWVKQR   40 (121)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCG--GGSEEEEEEEC
T ss_pred             CCCCEEEeCCCcEEEEEEecCccc--CCcEEEEEEEC
Confidence            366788999999999999863211  13568999874

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=95.55  E-value=0.0053  Score=39.99  Aligned_cols=34  Identities=15%  Similarity=0.237  Sum_probs=25.6

Q ss_pred             CcceEEeecCCeEEEeeecCC-CCCCCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVDF-PGDTPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdf-P~~~PiPYVvqW~KdG   75 (80)
                      .|..+++..|+.|.|.|.+.- |.+   .+.+.|.|+.
T Consensus         6 q~~~~~v~~G~~v~L~C~~~~~~~~---~~~v~W~r~~   40 (220)
T 2fbj_H            6 ESGGGLVQPGGSLKLSCAASGFDFS---KYWMSWVRQA   40 (220)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGG---GSCEEEEEEC
T ss_pred             cCCCeEecCCCcEEEEEEecCccCC---CceEEEEEEC
Confidence            356688999999999999863 321   3559999864

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=95.54  E-value=0.0061  Score=38.73  Aligned_cols=34  Identities=12%  Similarity=0.211  Sum_probs=25.8

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCC-CceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTP-VPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~P-iPYVvqW~KdG   75 (80)
                      .|+.+++..|+.|.|.|.+.-.   | ....+.|.|++
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~---~~~~~~v~W~r~~   40 (210)
T 3d9a_H            6 ESGPSLVKPSQTLSLTCSVTGD---SITSDYWSWIRKF   40 (210)
T ss_dssp             EESCSEECTTSCEEEEEEEESS---CGGGSCEEEEEEE
T ss_pred             cCCCEEecCCCcEEEEEEEecc---cCCCCcEEEEEeC
Confidence            3677789999999999998632   2 13569999863

>2h32_A Immunoglobulin IOTA chain; beta sheets, V and C-type IG folds, immune system; 2.70A {Homo sapiens}

Probab=95.54  E-value=0.014  Score=36.40  Aligned_cols=35  Identities=17%  Similarity=0.416  Sum_probs=26.6

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |..+++..|++|.|+|.+....... .+.+.|.|+.
T Consensus         7 p~~v~v~~G~~vtL~C~~s~~~~~~-~~~v~Wyrq~   41 (126)
T 2h32_A            7 PPAMSSALGTTIRLTCTLRNDHDIG-VYSVYWYQQR   41 (126)
T ss_dssp             CSEEEEETTCCEEEEEEECTTSCGG-GCEEEEEEEC
T ss_pred             CCCEEECCCCCEEEEEEecCCCccc-cceEEEEEEC
Confidence            6678999999999999997542211 3568999874

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=95.52  E-value=0.016  Score=35.59  Aligned_cols=32  Identities=22%  Similarity=0.467  Sum_probs=25.4

Q ss_pred             EEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        43 ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .++..|+.+.|.|.+.  .+.|.| -++|.|+|..
T Consensus       117 ~~~~~g~~~~l~C~~~--~~~p~~-~v~W~~~~~~  148 (209)
T 1nbq_A          117 SSATIGNRAVLTCSEQ--DGSPPS-EYTWFKDGIV  148 (209)
T ss_dssp             SEEETTSCEEECCCCC--SCBSCC-EEEEEETTCC
T ss_pred             cceecCCEEEEEEeCC--CCCCCc-eeEEEECCee
Confidence            4578999999999872  356666 7999999864

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=95.48  E-value=0.007  Score=39.49  Aligned_cols=35  Identities=14%  Similarity=0.205  Sum_probs=25.8

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|..+++..|+.|.|.|.+.-...  -.+.+.|.|+.
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~--~~~~v~W~r~~   40 (223)
T 1dee_B            6 ESGGGVVQPGKSLRLSCAASGFTF--SGYGMHWVRQA   40 (223)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCG--GGSCEEEEEEC
T ss_pred             cCCCEEEcCCCcEEEEEEecCccc--CCceEEEEEEC
Confidence            356788999999999999874211  13569999864

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=95.48  E-value=0.01  Score=39.14  Aligned_cols=35  Identities=11%  Similarity=0.168  Sum_probs=21.8

Q ss_pred             CCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           36 DISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        36 ~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      ..+.|..+++..|+.|.|.|.+.-.   | ++.++|.|+
T Consensus         5 v~~~p~~~~v~~G~~v~L~C~~~~~---~-~~~v~W~r~   39 (259)
T 3omz_A            5 LEGRTKSVIRQTGSSAEITCDLAEG---S-TGYIHWYLH   39 (259)
T ss_dssp             ------CEEEETTCCEEEECCC---------CEEEEEEE
T ss_pred             cccCCceeEecCCCcEEEEEEEccC---C-CcEEEEEEE
Confidence            3567888999999999999998633   3 456999984

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=95.46  E-value=0.0084  Score=39.76  Aligned_cols=37  Identities=11%  Similarity=0.195  Sum_probs=26.6

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|..+++..|+.|.|.|.+.-.....-++.+.|.|+.
T Consensus         6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~   42 (239)
T 3tv3_H            6 ESGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQP   42 (239)
T ss_dssp             EESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEEC
T ss_pred             cCCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEEC
Confidence            4667889999999999998732111114679999863

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=95.44  E-value=0.0088  Score=40.76  Aligned_cols=35  Identities=23%  Similarity=0.467  Sum_probs=28.3

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|...++..|+.|.|.|.+.   +.|.| -++|.|+|..
T Consensus       313 ~~~~~~v~~g~~~~l~C~~~---g~p~p-~i~W~~~g~~  347 (388)
T 2v5m_A          313 DPPTQTVDFGRPAVFTCQYT---GNPIK-TVSWMKDGKA  347 (388)
T ss_dssp             ESSEEEECTTSCEEEEEEEE---EECCC-EEEEEETTEE
T ss_pred             CCCcEEecCCCCEEEEEEec---cccCC-eEEEEECCEE
Confidence            45567789999999999994   56666 5999999875

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=95.44  E-value=0.014  Score=38.78  Aligned_cols=31  Identities=16%  Similarity=0.256  Sum_probs=26.3

Q ss_pred             EEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        43 ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +++..|+.|.|.|.+.   +.|.|. +.|.|+|..
T Consensus       219 ~~~~~g~~v~l~C~~~---g~P~p~-i~W~~~g~~  249 (315)
T 1itb_B          219 MEVDLGSQIQLICNVT---GQLSDI-AYWKWNGSV  249 (315)
T ss_dssp             EECCSSSCEEEEEEEE---ECTTSE-EEEEETTEE
T ss_pred             EEEeCCCcEEEEEEEe---cCCCCe-eEEEECCEE
Confidence            6799999999999995   677774 699999864

>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L

Probab=95.44  E-value=0.014  Score=37.38  Aligned_cols=37  Identities=19%  Similarity=0.327  Sum_probs=26.1

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|.| .+++..|+.|.|+|.+....... .+.+.|.|+.
T Consensus        10 ~q~~-~v~v~~G~~vtL~C~~~~~~~~~-~~~v~Wyrq~   46 (135)
T 1p4b_L           10 TQES-ALTTSPGETVTLTCRSSTGAVTT-SNYASWVQEK   46 (135)
T ss_dssp             ECCS-EEEECTTCEEEEEEEETTSSCCG-GGCCEEEEEE
T ss_pred             EECC-cEEEcCCCCEEEEEEecCCCcCC-CCEEEEEEEC
Confidence            4444 49999999999999987432111 2448999874

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=95.44  E-value=0.018  Score=37.51  Aligned_cols=36  Identities=22%  Similarity=0.454  Sum_probs=28.3

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..|...++..|+.|.|.|.+.   +.|.| -++|.|+|.+
T Consensus       197 ~~~~~~~~~~g~~v~l~C~~~---g~p~~-~v~W~~~~~~  232 (284)
T 2rik_A          197 KKPHPVETLKGADVHLECELQ---GTPPF-QVSWHKDKRE  232 (284)
T ss_dssp             SCCCCEEECTTCCEEEEEECB---SSSCC-EEEEEETTEE
T ss_pred             eCCCcceecCCCeEEEEEEEE---ecCCC-EEEEEECCEE
Confidence            356667789999999999985   45555 5899999864

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=95.44  E-value=0.0092  Score=40.61  Aligned_cols=33  Identities=18%  Similarity=0.299  Sum_probs=26.7

Q ss_pred             ceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           41 VHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        41 ~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ...++..|+.|.|.|.++   +.|.|. ++|.|+|.+
T Consensus       220 ~~~~~~~G~~v~l~C~~~---g~p~~~-i~W~~~g~~  252 (395)
T 1bih_A          220 KDMMAKAGDVTMIYCMYG---SNPMGY-PNYFKNGKD  252 (395)
T ss_dssp             CSEEEETTSCEEEEEEEE---CSSCCC-CEEEETTEE
T ss_pred             CceEEECCCcEEEEEEec---cCCCCe-EEEEECCEE
Confidence            456799999999999984   556665 899999865

>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR complex, immune system; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D

Probab=95.42  E-value=0.016  Score=39.22  Aligned_cols=37  Identities=24%  Similarity=0.388  Sum_probs=29.5

Q ss_pred             CCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           36 DISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        36 ~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      ..|.|..+++..|+.|.|+|.+.... .  +|.+.|.|+.
T Consensus         6 v~Q~p~~v~v~~G~~vtL~C~~s~~~-~--~~~v~Wyrq~   42 (211)
T 2ak4_D            6 VTQAQTEISVVEKEDVTLDCVYETRD-T--TYYLFWYKQP   42 (211)
T ss_dssp             EECCCCEEEEETTCCEEECCEEECSC-S--SCEEEEEEEC
T ss_pred             eEEeCCEEEEecCCCEEEEEEecCCc-C--ceeEEEEEEC
Confidence            35678899999999999999986532 2  4679999874

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=95.41  E-value=0.0037  Score=42.14  Aligned_cols=38  Identities=26%  Similarity=0.423  Sum_probs=31.6

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      |..+++..|+.|.|.|.+.+..+.|.|-.+.|.|+|.+
T Consensus       233 ~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~  270 (339)
T 3o4o_C          233 LKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTH  270 (339)
T ss_dssp             SCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSC
T ss_pred             CceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCee
Confidence            45566889999999999987778886778999998864

>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=95.41  E-value=0.018  Score=35.61  Aligned_cols=37  Identities=14%  Similarity=0.136  Sum_probs=26.5

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      +.|..+++..|++|.|+|.+....... .+-+.|.|+.
T Consensus         5 ~~p~~v~~~~G~~vtL~C~~s~~~~~~-~~~v~Wyrq~   41 (117)
T 1xed_A            5 FGPEEVNSVEGNSVSITCYYPPTSVNR-HTRKYWCRQG   41 (117)
T ss_dssp             BCCSEEEEETTCCEEEEEECCCCHHHH-HSCEEEEEC-
T ss_pred             eCCCeEEEecCCCEEEEeEecCCcCCC-CceEEEEEeC
Confidence            567889999999999999987431000 2348999875

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=95.41  E-value=0.016  Score=36.66  Aligned_cols=29  Identities=17%  Similarity=0.161  Sum_probs=23.4

Q ss_pred             EeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           44 TALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        44 tA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ++..|+.|.|.|.++-   .| + .+.|.|+|..
T Consensus        15 ~v~~G~~v~L~C~~~~---~~-~-~~~W~k~g~~   43 (196)
T 2d3v_A           15 VISRGNSVTIRCQGTL---EA-Q-EYRLVKEGSP   43 (196)
T ss_dssp             EEETTCCEEEEEECCT---TC-C-EEEEEETTCS
T ss_pred             cccCCCeEEEEEeCCC---CC-c-EEEEEECCCC
Confidence            6889999999999863   22 3 7999999864

>1a2y_B IGG1-kappa D1.3 FV (heavy chain); complex (immunoglobulin/hydrolase), immunoglobulin V region, signal, hydrolase, glycosidase, bacteriolytic enzyme, egg white; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1a7r_H 1dvf_B 1g7h_B 1g7i_B 1g7j_B 1g7l_B 1g7m_B 1kir_B 1vfa_B 1vfb_B 1kiq_B 1a7o_H 1a7n_H 1a7p_H 1kip_B 1a7q_H 1dl7_H* 1bvk_B 1bvl_A 1p4i_H ...

Probab=95.40  E-value=0.012  Score=35.55  Aligned_cols=34  Identities=18%  Similarity=0.175  Sum_probs=25.3

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |..+++..|+.|.|+|.+.-....  .+.+.|.|+.
T Consensus         7 ~~~~~~~~G~~vtL~C~~~~~~~~--~~~v~Wyrq~   40 (116)
T 1a2y_B            7 SGPGLVAPSQSLSITCTVSGFSLT--GYGVNWVRQP   40 (116)
T ss_dssp             ECCSEECTTSCEEEEEEEESSCTT--SSEEEEEEEC
T ss_pred             CCCEEEeCCCcEEEEEEEcCCCcC--CcEEEEEEeC
Confidence            455789999999999999743111  2569999874

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=95.39  E-value=0.016  Score=42.07  Aligned_cols=37  Identities=22%  Similarity=0.426  Sum_probs=28.9

Q ss_pred             cceEEeecCCeEEEeeecCCC-CCCCCceEEEeeecccc
Q psy531           40 AVHITALLGESVVFNCGVDFP-GDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP-~~~PiPYVvqW~KdG~~   77 (80)
                      |...++..|+.|.|.|.++.. .+.| +.-+.|.|+|.+
T Consensus       449 ~~~~~v~~G~~v~L~C~~~~~~~~~p-~~~v~W~k~g~~  486 (585)
T 2ocw_A          449 PGNVTAVLGETLKVPCHFPCKFSSYE-KYWCKWNNTGCQ  486 (585)
T ss_pred             CCceeEecCCcEEEEEEecCCCCCCc-cEEEEEeecCce
Confidence            566789999999999999743 3444 456899999864

>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET: NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G* 3b9k_A* 2atp_A* 2arj_R

Probab=95.38  E-value=0.012  Score=37.26  Aligned_cols=35  Identities=20%  Similarity=0.089  Sum_probs=27.5

Q ss_pred             CCCCcceEEeecCCeEEEeeecC-CCCCCCCceEEEeeecc
Q psy531           36 DISNAVHITALLGESVVFNCGVD-FPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        36 ~~~~P~~ltA~vGe~VVlnCdvd-fP~~~PiPYVvqW~KdG   75 (80)
                      ..|.|.+++++.|++|.|+|.+. .+.     +-+.|.|+.
T Consensus         7 v~Q~p~~~~v~~G~~vtL~C~~s~~~~-----~~v~WyrQ~   42 (128)
T 1nez_G            7 LRIFPKKMDAELGQKVDLVCEVLGSVS-----QGCSWLFQN   42 (128)
T ss_dssp             EEEESSCEEECTTCCEEEEEEEESCCS-----SCEEEEEEE
T ss_pred             eEECCCeEEEcCCCCEEEEEEeCccCC-----CcEEEEEeC
Confidence            45678999999999999999984 332     338999864

>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D 2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D

Probab=95.37  E-value=0.016  Score=39.62  Aligned_cols=35  Identities=17%  Similarity=0.227  Sum_probs=27.6

Q ss_pred             CCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           36 DISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        36 ~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      ..|.|..+++..|++|.|+|.++..     .+-+.|.|+.
T Consensus         4 v~Q~p~~v~v~~G~~vtL~C~~~~~-----~~~v~Wyrq~   38 (215)
T 1oga_D            4 LEQSPQFLSIQEGENLTVYCNSSSV-----FSSLQWYRQE   38 (215)
T ss_dssp             CEEECSEEEEETTCCEEEEEECSSC-----CSCEEEEEEC
T ss_pred             EEECCCEEEEecCCCEEEEEEEcCC-----CceEEEEEeC
Confidence            3566889999999999999999532     2348999875

>1xiw_D Immunoglobulin heavy chain variable region; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy3_B

Probab=95.37  E-value=0.013  Score=35.72  Aligned_cols=34  Identities=18%  Similarity=0.222  Sum_probs=25.9

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |..+++..|++|.|+|.+.....  -.+-+.|.|+.
T Consensus         7 p~~~~~~~G~~vtL~C~~~~~~~--~~~~v~Wyrq~   40 (122)
T 1xiw_D            7 SGPELVKPGASMKISCKASGYSF--TGYTMNWVKQS   40 (122)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCG--GGEEEEEEEEE
T ss_pred             CCCEEEeCCCcEEEEEEeeCccc--CCCEEEEEEEC
Confidence            66688999999999999874311  13679999874

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=95.37  E-value=0.016  Score=39.56  Aligned_cols=36  Identities=31%  Similarity=0.712  Sum_probs=28.4

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      .|..+++..|+.|.|.|.+.   +.|.| .++|.|+|.+.
T Consensus       127 ~~~~~~~~~G~~v~l~C~~~---~~p~~-~v~W~~~~~~~  162 (403)
T 3laf_A          127 QTESITAFMGDTVLLKCEVI---GDPMP-TIHWQKNQQDL  162 (403)
T ss_dssp             CCCCEEEETTSCEEECCCEE---CSSCC-EEEEEESSSBC
T ss_pred             CCCcEEEEcCCeEEEEEEEc---ccCCC-eEEEEECCEec
Confidence            45667899999999999984   45555 79999998753

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=95.35  E-value=0.0072  Score=39.42  Aligned_cols=32  Identities=16%  Similarity=0.319  Sum_probs=26.8

Q ss_pred             EEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        43 ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .++..|+.|.|.|.+.   +.|+|+.+.|.|+|..
T Consensus       196 ~~~~~g~~v~l~C~~~---~~~~~~~~~w~~~~~~  227 (292)
T 4dkd_C          196 LVRIRGEAAQIVCSAS---SVDVNFDVFLQHNNTK  227 (292)
T ss_dssp             BCCCSSSCEEEEEEEE---ESSSCCEEECCBSSCC
T ss_pred             eeEecCCCEEEEEEec---CCCCceEEEEeCCCcc
Confidence            4457899999999998   6678899999999763

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=95.35  E-value=0.0066  Score=38.90  Aligned_cols=34  Identities=15%  Similarity=0.234  Sum_probs=25.5

Q ss_pred             CcceEEeecCCeEEEeeecCC-CCCCCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVDF-PGDTPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdf-P~~~PiPYVvqW~KdG   75 (80)
                      +|..+++..|+.|.|.|.+.- |.+   .+.+.|.|+.
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~---~~~v~W~r~~   40 (222)
T 1q9r_B            6 ESGGGLVQSGGSLRLSCATSGFTFT---DYYMSWVRQP   40 (222)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGG---GSCEEEEEEC
T ss_pred             cCCceeEcCCCEEEEEEEecCccCC---CCcEEEEEEC
Confidence            356678999999999999973 221   3458999864

>1rjc_A 1D2L19, camelid heavy chain antibody; beta sandwich, immunoglobulin fold, protein-protein hetero C alpha-beta orthogonal bundle, immune system-hydrolase compl; 1.40A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 1ri8_A 1xfp_A 1jtt_A 2x6m_A 1zmy_A 1f2x_K

Probab=95.34  E-value=0.022  Score=36.40  Aligned_cols=34  Identities=12%  Similarity=0.262  Sum_probs=25.9

Q ss_pred             CcceEEeecCCeEEEeeecCCC-CCCCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVDFP-GDTPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP-~~~PiPYVvqW~KdG   75 (80)
                      .|..+++..|++|.|+|.+.-. .+   .+.+.|.|+.
T Consensus         6 qp~~~~v~~G~~vtL~C~~s~~~~~---~~~v~Wyrq~   40 (137)
T 1rjc_A            6 ASGGGSVQAGQSLRLSCATSGATSS---SNCMGWFRQA   40 (137)
T ss_dssp             CBCCEEECTTCCEEEEEECC-CTTT---CSEEEEEEEC
T ss_pred             ecCCEEEecCCCEEEEEEecCCcCC---CcEEEEEEEC
Confidence            3677899999999999998642 22   3568999874

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=95.33  E-value=0.014  Score=42.07  Aligned_cols=34  Identities=12%  Similarity=0.379  Sum_probs=27.1

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .+|..+++..|+.|.|.|.+.   +.| +..+.|.|++
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~---~~~-~~~v~W~k~~   38 (523)
T 2rcj_C            5 TQPPSASGTPGQRVTISCTGT---SSG-SITVNWYQQL   38 (523)
T ss_pred             ccCCceEEecCCcEEEEEEEe---ccC-CceEEEEEeC
Confidence            457788999999999999994   333 4568999975

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=95.32  E-value=0.011  Score=38.95  Aligned_cols=35  Identities=14%  Similarity=0.174  Sum_probs=27.3

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .+.|..+++..|+.|.|.|.+.-   .|. ..+.|.|+.
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~---~~~-~~v~W~k~~   39 (242)
T 2znx_A            5 TQSPATLSVTPGNSVSLSCRASQ---SIG-NNLHXYQQK   39 (242)
T ss_dssp             EEECSEEEECTTCCEEEEEEESS---CCT-TCEEEEEEC
T ss_pred             EEcCCeEEEcCCCcEEEEEEeCC---CCC-ceEEEEEeC
Confidence            35688899999999999999863   333 358999863

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=95.30  E-value=0.011  Score=40.55  Aligned_cols=35  Identities=20%  Similarity=0.352  Sum_probs=27.2

Q ss_pred             CCcceEEeecCCeEEEeeecC-CCCCCCCceEEEeeecc
Q psy531           38 SNAVHITALLGESVVFNCGVD-FPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvd-fP~~~PiPYVvqW~KdG   75 (80)
                      +.|..+++..|+.|.|.|.++ +|.+   .+.+.|.|+.
T Consensus        11 ~~p~~~~v~~G~~v~L~C~~~~~~~~---~~~v~W~r~~   46 (261)
T 2xqy_G           11 QQPGAELVKPGASVKMSCKASGYSFT---SYWMNWVKQR   46 (261)
T ss_dssp             ECCSEEEECTTCCEEEEEEEESSCGG---GSCEEEEEEC
T ss_pred             ECCCCEEEcCCCCEEEEEEeCCcccC---CceEEEEEeC
Confidence            457889999999999999997 3322   3459999873

>1mfa_H IGG1-lambda Se155-4 FAB (heavy chain); immunoglobulin; HET: GLA MMA; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy2_B

Probab=95.30  E-value=0.013  Score=35.48  Aligned_cols=35  Identities=23%  Similarity=0.301  Sum_probs=26.1

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|..+++..|+.|.|+|.+.-...  -.+.+.|.|+.
T Consensus         6 qp~~~~~~~G~~v~L~C~~~~~~~--~~~~v~Wyrq~   40 (120)
T 1mfa_H            6 QSGTVVARPGASVKMSCKASGYTF--TNYWMHWIKQR   40 (120)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCG--GGSEEEEEEEE
T ss_pred             CCCCEEEeCCCCEEEEEEeeCccc--cccEEEEEEEC
Confidence            366789999999999999863211  13569999864

>1n4x_H Immunoglobulin heavy chain variable region; immune system; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy4_B

Probab=95.29  E-value=0.012  Score=35.64  Aligned_cols=33  Identities=21%  Similarity=0.325  Sum_probs=25.3

Q ss_pred             cceEEeecCCeEEEeeecCC-CCCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGVDF-PGDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdf-P~~~PiPYVvqW~KdG   75 (80)
                      |..+++..|+.|.|+|.+.- +.+   .+.+.|.|+.
T Consensus         7 p~~~~~~~G~~vtL~C~~~~~~~~---~~~v~Wyrq~   40 (120)
T 1n4x_H            7 SGPELKKPGETVKISCKATNYAFT---DYSMHWVKQA   40 (120)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGG---GSCEEEEEEC
T ss_pred             CCCEEEcCCCeEEEEEEecCcccC---CcEEEEEEEC
Confidence            56689999999999999863 211   3458999874

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=95.29  E-value=0.011  Score=38.83  Aligned_cols=34  Identities=12%  Similarity=0.346  Sum_probs=27.6

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCc---eEEEeeec
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVP---YVLQWEKK   74 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiP---YVvqW~Kd   74 (80)
                      +.|..+++..|+.|.|.|.+.-   .|.|   +.+.|.|+
T Consensus       138 ~~p~~~~v~~G~~v~L~C~~~~---~~~~~~~~~v~W~r~  174 (253)
T 3uzq_A          138 QTPASLAVSLGQRATISCRASE---NVDRYGNSFMHWYQQ  174 (253)
T ss_dssp             EECSEEEECTTSCEEEEEEESS---CCEETTEECEEEEEE
T ss_pred             CcCCeEEEeCCCCEEEEEEecC---ccccCCCcEEEEEEE
Confidence            4567788999999999999863   4555   68999996

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=95.27  E-value=0.017  Score=37.59  Aligned_cols=35  Identities=23%  Similarity=0.329  Sum_probs=27.7

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|...++..|+.|.|.|.+.   +.|.| -+.|.|+|.+
T Consensus       106 ~~~~~~~~~g~~v~l~C~~~---~~p~~-~v~W~~~~~~  140 (291)
T 1qz1_A          106 APTPQEFKEGEDAVIVCDVV---SSLPP-TIIWKHKGRD  140 (291)
T ss_dssp             CCSSEEEETTSCEEECCEEE---CSSCC-EEEEEETTSC
T ss_pred             CCCcccccCCCeEEEEEEec---cCCCC-EEEEEECCEE
Confidence            45556789999999999985   55666 4999999865

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=95.27  E-value=0.016  Score=41.76  Aligned_cols=36  Identities=14%  Similarity=0.321  Sum_probs=30.6

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|...++..|+.|.|.|.+.   +.|.|.-++|.|+|..
T Consensus       217 ~~~~~~v~~G~~v~L~C~~~---g~p~p~~i~W~~~~~~  252 (524)
T 2ec8_A          217 SKASYLLREGEEFTVTCTIK---DVSSSVYSTWKRENSQ  252 (524)
T ss_dssp             SCSEEEEETTSCEEEEEEEE---ESSTTCEEEEEETTCS
T ss_pred             cCCcceEEcCCcEEEEEEEe---cCCCcEEEEEEeCCCC
Confidence            44556799999999999998   6788888999999876

>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist peptide T-cell vaccines, transmembrane, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A

Probab=95.25  E-value=0.015  Score=38.75  Aligned_cols=35  Identities=26%  Similarity=0.445  Sum_probs=27.4

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|.|..+++..|+.|.|+|.+....    .+-+.|.|+.
T Consensus         4 ~q~p~~v~v~~G~~v~L~C~~s~~~----~~~v~W~rq~   38 (203)
T 2bnu_A            4 TQIPAALSVPEGENLVLNCSFTDSA----IYNLQWFRQD   38 (203)
T ss_dssp             EEECSEEEEETTCCEEEEEEESCCC----EEEEEEEEEC
T ss_pred             EEcCCEEEEeCCCCEEEEEEECCCC----cceEEEEEeC
Confidence            3568899999999999999986432    1358998864

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=95.24  E-value=0.017  Score=41.09  Aligned_cols=35  Identities=14%  Similarity=0.232  Sum_probs=27.9

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .+|..+++..|+.|.|.|.+.   + |.|. ++|.|++..
T Consensus       251 ~~~~~v~v~~G~~~~l~C~~~---g-p~p~-i~W~~~~~~  285 (361)
T 2xot_A          251 YKESAWEAHLGDTLTIRCDTK---Q-QGMT-KVWVSPSNE  285 (361)
T ss_dssp             CCCCCCEEETTCCEEECCCCS---S-TTCE-EEEECTTSC
T ss_pred             ccccCceecCCCeEEEEeEee---C-CCCe-EEEEeCCCe
Confidence            456778999999999999984   4 6665 599997654

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=95.19  E-value=0.015  Score=36.67  Aligned_cols=29  Identities=21%  Similarity=0.155  Sum_probs=23.0

Q ss_pred             EeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           44 TALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        44 tA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ++..|+.|.|.|...-|    . -.+.|.|+|..
T Consensus        18 ~v~~G~~v~L~C~~~~~----~-~~~~W~k~g~~   46 (184)
T 2gi7_A           18 LVPLEKPVTLRCQGPPG----V-DLYRLEKLSSS   46 (184)
T ss_dssp             EEETTCCEEEEEECSTT----C-SEEEEEETTTC
T ss_pred             cccCCCcEEEEEeCCCC----C-CEEEEEECCcc
Confidence            68899999999997542    2 35899999863

>2x1q_A Gelsolin nanobody; contractIle protein; 1.06A {Lama glama} PDB: 2x1p_A 2xa3_A 3k7u_A 3sn6_N* 3stb_A 2x1o_A 3k80_A 1ol0_A 1u0q_A 1qd0_A* 3ezj_B 3p0g_B* 1mvf_A 1t2j_A

Probab=95.19  E-value=0.016  Score=35.99  Aligned_cols=33  Identities=15%  Similarity=0.201  Sum_probs=23.5

Q ss_pred             cceEEeecCCeEEEeeecCCC-CCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGVDFP-GDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP-~~~PiPYVvqW~KdG   75 (80)
                      |..+++..|+.|.|+|.+.-. .+   .+.+.|.|+.
T Consensus         7 p~~~~v~~G~~vtL~C~~s~~~~~---~~~v~Wyrq~   40 (127)
T 2x1q_A            7 SGGGLVQPGGSLRLSCAASGRTFS---NYRMGWFRQA   40 (127)
T ss_dssp             ECCEEECTTCCEEEEEC------C---CSEEEEEEEC
T ss_pred             CCCEEEcCCCCEEEEEEeCCcccC---CcEEEEEEEC
Confidence            677899999999999998632 22   3569999874

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=95.19  E-value=0.01  Score=36.14  Aligned_cols=32  Identities=28%  Similarity=0.571  Sum_probs=25.5

Q ss_pred             eEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           42 HITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        42 ~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..++..|+.|.|.|.+.   +.|.| -++|.|+|..
T Consensus       107 ~~~~~~g~~v~l~C~~~---g~p~~-~v~W~~~g~~  138 (189)
T 2v5t_A          107 NATAERGEEMTFSCRAS---GSPEP-AISWFRNGKL  138 (189)
T ss_dssp             EEETTSCCCEEEECEEE---EESCC-EEEEEETTEE
T ss_pred             cccccCCCcEEEEEEEc---cCCCC-eEEEEECCEE
Confidence            45678899999999995   44666 4899999864

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=95.18  E-value=0.011  Score=36.12  Aligned_cols=34  Identities=21%  Similarity=0.456  Sum_probs=26.9

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      |...+...|+.+.|.|.+.   +.|.| -++|.|+|..
T Consensus       107 ~~~~~~~~g~~~~l~C~~~---g~p~~-~v~W~~~~~~  140 (192)
T 2iep_A          107 PINVKIIEGLKAVLPCTTM---GNPKP-SVSWIKGDSA  140 (192)
T ss_dssp             CCCEEEETTSCEEECCEEE---EESCC-EEEEEETTEE
T ss_pred             CcceEEeCCCcEEEEEEEe---ccCCc-eEEEEeCCEE
Confidence            4456788999999999983   55666 4999999865

>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold, fluorogen activation, dimethylindole RE binding protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A

Probab=95.17  E-value=0.021  Score=35.91  Aligned_cols=34  Identities=12%  Similarity=0.248  Sum_probs=26.5

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |..+++..|++|.|+|.+....-  -.+.+.|.|+.
T Consensus         7 p~~v~v~~G~~vtL~C~~s~~~~--~~~~v~Wyrq~   40 (123)
T 3t0v_A            7 SPSVSGTPGQKVTIFCSGSSSNV--EDNSVYWYQQF   40 (123)
T ss_dssp             CCCEEECTTCCEEEEEECCTTTT--TTSCEEEEEEC
T ss_pred             cCeEEEcCCCCEEEEEecCCCcc--CCCeEEEEEEC
Confidence            67899999999999999875421  13568999973

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=95.17  E-value=0.011  Score=39.01  Aligned_cols=34  Identities=15%  Similarity=0.101  Sum_probs=25.7

Q ss_pred             CcceEEeecCCeEEEeeecCCC-CCCCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVDFP-GDTPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP-~~~PiPYVvqW~KdG   75 (80)
                      .|..+++..|+.|.|.|.+.-. .+   .+.+.|.|+.
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~---~~~v~W~r~~   40 (232)
T 1dn0_B            6 QWGAGLLKPSETLSLTCAVYGGSFS---DYYWSWIRQP   40 (232)
T ss_dssp             EECCCEECTTSCEEEEEEEESSCCS---SCCEEEEEEC
T ss_pred             CCCCEEEeCCCcEEEEEEEccccCC---CceEEEEEeC
Confidence            4666889999999999998632 22   2569999863

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=95.15  E-value=0.03  Score=36.25  Aligned_cols=36  Identities=11%  Similarity=0.380  Sum_probs=27.9

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      ..|..+++..|+.|.|.|.+....+.|.| -+.|.|.
T Consensus       123 ~~p~~~~v~~G~~v~L~C~~~~~~~~p~~-~v~W~~~  158 (268)
T 3mj6_A          123 EEPRDLRVRVGDTTQMRCSIQSTEEKRVT-KVNWMFS  158 (268)
T ss_dssp             CCCSEEEEETTCCEEECCBCEESSSSCCC-EEEEEEE
T ss_pred             cCCCccccccCCcEEEEEEecCCCCCCcc-ceEEEec
Confidence            46778889999999999999533455555 5799994

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=95.15  E-value=0.021  Score=38.95  Aligned_cols=39  Identities=15%  Similarity=0.173  Sum_probs=29.4

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|...++..|+.|.|.|.+.-....+.|..++|.|+|..
T Consensus       234 ~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~  272 (329)
T 3oq3_B          234 LDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGW  272 (329)
T ss_dssp             CCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSC
T ss_pred             cCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCee
Confidence            456678999999999999974322234558999999875

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=95.15  E-value=0.01  Score=38.44  Aligned_cols=33  Identities=15%  Similarity=0.417  Sum_probs=24.8

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCC-ceEEEeeec
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPV-PYVLQWEKK   74 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~Pi-PYVvqW~Kd   74 (80)
                      .|..+++..|+.|.|.|.+.   +.|. ...++|.|+
T Consensus         8 ~p~~~~v~~G~~v~L~C~~~---g~p~~~~~v~W~k~   41 (247)
T 2ghw_B            8 QSGGGVVQPGKSLRLSCAAS---GFAFSSYAMHWVRQ   41 (247)
T ss_dssp             EECCEEECTTCCEEEEEEEE---SSCGGGSCEEEEEE
T ss_pred             ecCCEEEecCCcEEEEEEec---cccCCCceEEEEEe
Confidence            34558899999999999986   2221 356999985

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=95.14  E-value=0.017  Score=37.45  Aligned_cols=31  Identities=16%  Similarity=0.403  Sum_probs=24.9

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeee
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEK   73 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~K   73 (80)
                      .|..+++..|+.|.|.|.+.   +.|.| .++|.|
T Consensus       141 ~~~~~~v~~G~~v~L~C~~~---~~~~~-~v~W~k  171 (247)
T 2ghw_B          141 SPATLSLSPGERATLSCRAS---QSVRS-NLAWYQ  171 (247)
T ss_dssp             ECSEEEECTTSCEEEEEEES---SCCTT-CEEEEE
T ss_pred             cCCEEEecCCCcEEEEEEeC---CCccc-eEEEEE
Confidence            46678899999999999985   34445 699999

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=95.14  E-value=0.021  Score=35.05  Aligned_cols=33  Identities=18%  Similarity=0.280  Sum_probs=24.3

Q ss_pred             EEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        43 ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .++..|+.|.|.|.+.-.  .++..-+.|.|+|.+
T Consensus         8 ~~v~~G~~v~l~C~~~~~--~~p~~~~~W~k~~~~   40 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDS--ATEVTGHRWLKGGVV   40 (184)
T ss_dssp             EEEEETTEEEEEEEEESC--SSCCCEEEEESSSEE
T ss_pred             EEEecCCCEEEEEECCCC--CCCceEEEEEeCCEE
Confidence            458999999999997532  122346999999864

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=95.13  E-value=0.024  Score=35.21  Aligned_cols=32  Identities=3%  Similarity=-0.046  Sum_probs=25.4

Q ss_pred             EEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        43 ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .+...|+.|.|.|.++   +.|+|.-+.|.|+|..
T Consensus        98 ~~~~~g~~~~l~C~~~---~~~~~~~~~W~k~g~~  129 (175)
T 1fnl_A           98 WVFKEEDPIHLRCHSW---KNTALHKVTYLQNGKD  129 (175)
T ss_dssp             SEEETTCCEEEEEEEC---TTCCCEEEEEEETTEE
T ss_pred             ceecCCCCEEEEEEcC---CCCCceEEEEEECCeE
Confidence            4478999999999874   4455678999999864

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=95.13  E-value=0.024  Score=35.12  Aligned_cols=33  Identities=21%  Similarity=0.320  Sum_probs=25.8

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeee--ccc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEK--KIV   76 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~K--dG~   76 (80)
                      |...++..|+.|.|.|.++   +.|.| -+.|.|  +|.
T Consensus        99 ~~~~~~~~g~~v~l~C~~~---g~p~p-~i~W~~~~~g~  133 (190)
T 2wv3_A           99 KRSENKNEGQDAMMYCKSV---GYPHP-EWMWRKKENGV  133 (190)
T ss_dssp             CSEEEEETTSCEEEEEEEE---CSSCC-EEEEEEEETTE
T ss_pred             CCcceeeCCCcEEEEEEeC---ccCCC-ceEEEEcCCCc
Confidence            4456789999999999984   56667 689999  553

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=95.12  E-value=0.02  Score=39.13  Aligned_cols=35  Identities=17%  Similarity=0.377  Sum_probs=27.3

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCc-----eEEEeeecc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVP-----YVLQWEKKI   75 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiP-----YVvqW~KdG   75 (80)
                      +.|..+++..|+.|.|.|.+.   +.|.|     ..+.|.|++
T Consensus       164 ~~p~~~~v~~G~~v~L~C~~~---~~~~~~~~~~~~v~W~k~~  203 (291)
T 2gki_A          164 QSPSSLAVSAGEKVTMSCKSS---QSLFNSRTRKNYLAWYQQK  203 (291)
T ss_dssp             CSCSEEEEETTSCEEEEEEES---SCCEETTTTEECEEEEEEC
T ss_pred             cCCCEEEEcCCCcEEEEEEcC---CccccccccceeEEEEEEC
Confidence            457788899999999999985   33444     479999973

>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus}

Probab=95.12  E-value=0.0063  Score=41.55  Aligned_cols=39  Identities=21%  Similarity=0.138  Sum_probs=30.1

Q ss_pred             CCCCCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           33 VSPDISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        33 ~~g~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .....|.|..++++.|+.|.|+|.+. ..   ..|-+.|.|+.
T Consensus         9 s~~v~Q~P~~v~v~~G~sVtL~C~~s-~~---~~~~v~WyrQ~   47 (166)
T 3dmm_C            9 APELRIFPKKMDAELGQKVDLVCEVL-GS---VSQGCSWLFQN   47 (166)
T ss_dssp             CCEEEEECSCBCCCTTCCEEEEEEEE-SS---SCCEEEEEEEE
T ss_pred             CccEEEeCCeEEEcCCCCEEEEEEEe-CC---CCceEEEEEEC
Confidence            34456789999999999999999996 21   23668998874

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=95.12  E-value=0.0036  Score=41.94  Aligned_cols=36  Identities=14%  Similarity=0.104  Sum_probs=0.0

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|..+++..|+.|.|.|.+.   +.+++-.+.|.|+|.+
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~---~~~p~~~v~W~k~g~~   49 (334)
T 1ry7_B           14 QQEQLVFGSGDAVELSCPPP---GGGPMGPTVWVKDGTG   49 (334)
T ss_dssp             ---------------------------------------
T ss_pred             CcCcEEEecCCcEEEEeeCC---CCCCCcceEEEECCee
Confidence            47778899999999999987   3322236999999864

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=95.09  E-value=0.025  Score=36.77  Aligned_cols=29  Identities=24%  Similarity=0.686  Sum_probs=22.8

Q ss_pred             eEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           42 HITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        42 ~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      .+.++.|+.|.|.|.++   |.|.|. +.|.|+
T Consensus        10 ~~~~~~G~~v~L~C~~~---g~P~p~-i~W~~~   38 (202)
T 1vca_A           10 RYLAQIGDSVSLTCSTT---GCESPF-FSWRTQ   38 (202)
T ss_dssp             EEEEETTSCEEEEEEEE---SCSSCE-EEEEET
T ss_pred             cEEEcCCCcEEEEEeec---CCCCCe-EEEECC
Confidence            35577999999999996   345566 899984

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=95.07  E-value=0.013  Score=40.44  Aligned_cols=34  Identities=18%  Similarity=0.205  Sum_probs=25.6

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      +|..+++..|+.|.|.|.+.-.. . .++.+.|.|+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~-~-~~~~v~W~k~   39 (344)
T 1za6_B            6 QSGAEVVKPGASVKISCKASGYT-F-TDHAIHWVKQ   39 (344)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSC-T-TSSCEEEEEE
T ss_pred             CCCCeEEeCCCcEEEEEEcCCcc-c-cccEEEEEEE
Confidence            35567899999999999996431 1 2356999987

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=95.06  E-value=0.018  Score=37.76  Aligned_cols=36  Identities=14%  Similarity=0.132  Sum_probs=26.7

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +|..+++..|+.|.|.|.+.-   .++...++|.|+|..
T Consensus        12 ~~~~~~v~~G~~v~l~C~~~~---~~p~~~v~W~~~~~~   47 (317)
T 2y25_A           12 EYLSWEVTGECNVLLKCKVAN---IKKETHIVWYKDERE   47 (317)
T ss_dssp             EEEEEEEETTTEEEEEEEEES---CCTTCEEEEEETTEE
T ss_pred             eeeeEEECCCCeEEEEEEEcC---CCCCCEEEEEECCeE
Confidence            344578999999999999653   323346899999864

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=95.06  E-value=0.01  Score=39.05  Aligned_cols=35  Identities=17%  Similarity=0.166  Sum_probs=25.6

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      ++|..+++..|+.|.|.|.+.-.  ...++.++|.|+
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~g~--~~~~~~v~W~r~   40 (253)
T 3uzq_A            6 EQSGAELVKPGASVRLSCTASGF--NIKDTYMSWVKQ   40 (253)
T ss_dssp             EECCCEEECTTCCEEEEEEECSS--CGGGSCEEEEEE
T ss_pred             ecCCCeeecCCCcEEEEEEeeCC--cccCceEEEEEe
Confidence            45777889999999999996521  112456899984

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=95.05  E-value=0.024  Score=38.55  Aligned_cols=31  Identities=19%  Similarity=0.532  Sum_probs=25.2

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      |...++..|+.|.|.|.++   +.|.|- +.|.|+
T Consensus         7 ~~~~~~~~G~~v~l~C~~~---g~p~p~-v~W~~~   37 (389)
T 2jll_A            7 LKNETTYENGQVTLVCDAE---GEPIPE-ITWKRA   37 (389)
T ss_dssp             CCCEEEETTSEEEEEEEEE---CSSCCE-EEEEET
T ss_pred             cCceEEeCCCeEEEEEEee---cccCCe-EEEEeC
Confidence            4556788899999999986   666664 799998

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=95.05  E-value=0.021  Score=37.95  Aligned_cols=35  Identities=14%  Similarity=0.310  Sum_probs=27.6

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|...++..|+.|.|.|.+.   +.|.| .+.|.|+|..
T Consensus       114 ~~~~~~v~~g~~v~l~C~~~---g~p~~-~v~W~k~~~~  148 (304)
T 2yd9_A          114 GPQLKVVERTRTATMLCAAS---GNPDP-EITWFKDFLP  148 (304)
T ss_dssp             CCCCEEEETTSCEEECCEEE---CSSCC-EEEEEETTEE
T ss_pred             CCccEEEeCCCeEEEEEECc---cCCCC-eEEEEECCEE
Confidence            45556788999999999984   55666 6999999864

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=95.02  E-value=0.024  Score=36.89  Aligned_cols=34  Identities=21%  Similarity=0.405  Sum_probs=27.0

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeee-ccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEK-KIV   76 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~K-dG~   76 (80)
                      ..|..+++..|+.|.|.|.+.   +.| + -+.|.| +|.
T Consensus         9 ~~~~~~~v~~G~~v~l~C~~~---~~p-~-~v~W~~~~g~   43 (291)
T 2wim_A            9 ISLSKVELSVGESKFFTCTAI---GEP-E-SIDWYNPQGE   43 (291)
T ss_dssp             ESCSEEEEETTCCEEEEEEEE---SCC-S-EEECBCTTCC
T ss_pred             EeccceEecCCCcEEEEEEEe---CCC-C-ceEEECCCCc
Confidence            467778899999999999996   333 2 699999 554

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=95.02  E-value=0.018  Score=38.14  Aligned_cols=33  Identities=18%  Similarity=0.077  Sum_probs=24.9

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|. .++..|+.|.|.|..+-|     +-.+.|.|+|..
T Consensus        15 ~p~-~~v~~G~~vtL~C~~~~~-----~~~~~W~k~g~~   47 (218)
T 1uct_A           15 KSS-PVIPLDGSVKIQCQAIRE-----AYLTQLMIIKNS   47 (218)
T ss_dssp             SSC-SEEETTCCEEEEECCCTT-----CSEEEEEEEETT
T ss_pred             cCC-CccCCCCCEEEEEEcCCC-----CCEEEEEECCCc
Confidence            344 358899999999998643     235899999865

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=95.02  E-value=0.0044  Score=40.45  Aligned_cols=30  Identities=17%  Similarity=0.251  Sum_probs=23.7

Q ss_pred             eecCCeEEEeeecCCCCCC---CCceEEEeeecccc
Q psy531           45 ALLGESVVFNCGVDFPGDT---PVPYVLQWEKKIVK   77 (80)
Q Consensus        45 A~vGe~VVlnCdvdfP~~~---PiPYVvqW~KdG~~   77 (80)
                      +..|+.|.|.|.+.   +.   |...-|+|.|+|.+
T Consensus        23 v~~G~~v~L~C~~~---g~~~~p~~~~v~W~k~~~~   55 (218)
T 2rgs_A           23 LMISLTPKVTCVVV---DVSEDDPDVQISWFVNNVE   55 (218)
T ss_dssp             HCTTSCCEEEEEEE---EECTTSCCEEEEEEETTEE
T ss_pred             hccCCCeeEEEEEc---CCccCCCceEEEEEECCcc
Confidence            78899999999996   22   33367999999854

>1i3u_A Antibody VHH LAMA domain; VHH fragment, immune system; HET: RR1; 1.95A {Lama glama} SCOP: b.1.1.1 PDB: 1i3v_A

Probab=94.97  E-value=0.015  Score=35.82  Aligned_cols=33  Identities=18%  Similarity=0.307  Sum_probs=25.7

Q ss_pred             cceEEeecCCeEEEeeecCCC-CCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGVDFP-GDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP-~~~PiPYVvqW~KdG   75 (80)
                      |..+++..|++|.|+|.+... .+   .+-+.|.|+.
T Consensus         7 p~~~~v~~G~~vtL~C~~s~~~~~---~~~v~Wyrq~   40 (127)
T 1i3u_A            7 SGGGLVQAGDSLKLSCEASGDSIG---TYVIGWFRQA   40 (127)
T ss_dssp             ESCEECCTTCCEEEEEEEESSCGG---GSEEEEEEEC
T ss_pred             CCCEEEeCCCcEEEEEEecCCCcC---CcEEEEEEEC
Confidence            667899999999999998632 22   3569999874

>1dlf_H Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 2dlf_H 1wz1_H* 3iy5_B 2uud_H*

Probab=94.96  E-value=0.02  Score=35.13  Aligned_cols=34  Identities=12%  Similarity=0.099  Sum_probs=25.4

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |..+++..|++|.|+|.+.-....  .+.+.|.|+.
T Consensus         7 ~~~~~~~~G~~vtL~C~~~~~~~~--~~~v~Wyrq~   40 (124)
T 1dlf_H            7 SGGGLVQPGGSMKLSCATSGFTFS--DAWMDWVRQS   40 (124)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCTT--TCEEEEEEEE
T ss_pred             cCCEEEcCCCCEEEEeECCCccCC--CCeEEEEEEC
Confidence            557889999999999998632111  3568999874

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=94.96  E-value=0.035  Score=38.10  Aligned_cols=41  Identities=17%  Similarity=0.199  Sum_probs=30.3

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCC-CCceEEEeeecccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDT-PVPYVLQWEKKIVK   77 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~-PiPYVvqW~KdG~~   77 (80)
                      ++.|..+++..|+.|.|.|.+....+. -++-.++|.|+|.+
T Consensus       180 p~~~~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~  221 (363)
T 1wio_A          180 QKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERAS  221 (363)
T ss_dssp             SCSEEEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCC
T ss_pred             CCCCCceEEecCCEEEEEEEEecccccCCCceeEEEecCCCC
Confidence            344567778999999999999765332 33456899999865

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=94.96  E-value=0.022  Score=36.01  Aligned_cols=32  Identities=9%  Similarity=-0.004  Sum_probs=24.3

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      |.. ++..|+.|.|.|..+-+     |-.+.|.|+|.+
T Consensus        11 p~~-~v~~G~~v~L~C~~~~~-----~~~~~w~k~g~~   42 (188)
T 1oll_A           11 PHF-MVPKEKQVTICCQGNYG-----AVEYQLHFEGSL   42 (188)
T ss_dssp             SCS-EEETTCCEEEEEECCTT-----CCEEEEEETTEE
T ss_pred             cCC-cCCCCCCEEEEEecCCC-----CCEEEEEECCCc
Confidence            444 68999999999998632     345789999864

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=94.96  E-value=0.017  Score=36.89  Aligned_cols=28  Identities=21%  Similarity=0.372  Sum_probs=22.1

Q ss_pred             EeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           44 TALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        44 tA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      +++.|+.|.|.|.+  |.    | -+.|.|+|.+.
T Consensus       118 ~~~~G~~v~l~C~~--p~----p-~i~W~k~g~~i  145 (186)
T 1jbj_A          118 GSRGDGSVLLTCGL--TD----K-TIKWLKDGSII  145 (186)
T ss_dssp             CCSSSCEEEEECSS--SC----S-CEEEEETTEEC
T ss_pred             ecCCCCeEEEEeeC--CC----C-eEEEEECCEEC
Confidence            35699999999999  42    2 48999999753

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=94.95  E-value=0.014  Score=39.62  Aligned_cols=38  Identities=11%  Similarity=0.153  Sum_probs=28.6

Q ss_pred             CcceEEeecCCeEEEeeecCCC----CCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFP----GDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP----~~~PiPYVvqW~KdG~~   77 (80)
                      .|+..++++|+.|.|.|.+...    .+.|.|- +.|.|+|.+
T Consensus        10 ~P~~~~v~~G~~v~l~C~~~~~~~~~~~~p~p~-i~W~~~g~~   51 (303)
T 1i1r_A           10 SPESPVVQLHSNFTAVCVLKEKCMDYFHVNANY-IVWKTNHFT   51 (303)
T ss_dssp             ESSSCEEETTCCEEEEEEECHHHHHHHTCCGGG-EEEEETTEE
T ss_pred             ccCCceEeCCCCEEEEEEECCccccccCCChhh-eEEEECCEE
Confidence            5677889999999999999842    1334444 789999865

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=94.95  E-value=0.03  Score=35.94  Aligned_cols=32  Identities=9%  Similarity=0.040  Sum_probs=24.2

Q ss_pred             CCcceEEeecC--CeEEEeeecCCCCCCCCceEEEeeec
Q psy531           38 SNAVHITALLG--ESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        38 ~~P~~ltA~vG--e~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      .+|+.+++..|  +.|+|.|.+.-|.    | -+.|.|+
T Consensus        12 ~~p~~v~v~eG~~~~v~L~C~~~~p~----~-~v~w~~~   45 (213)
T 2x1w_L           12 DQHGVVYITENKNKTVVIPCLGSISN----L-NVSLCAR   45 (213)
T ss_dssp             --CEEEEECCSTTCEEEECCCBSSTT----C-CEEEEEE
T ss_pred             CCceEEEEecCCCccEEEeeccCCCC----c-EEEEEhh
Confidence            46789999999  9999999997543    2 3778774

>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*

Probab=94.94  E-value=0.019  Score=38.22  Aligned_cols=35  Identities=20%  Similarity=0.208  Sum_probs=27.9

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|.|..+++..|++|.|+|.+....    .+.+.|.|+.
T Consensus         5 ~Q~p~~v~v~~G~~v~L~C~~s~~~----~~~v~Wyrq~   39 (194)
T 1lp9_E            5 TQTEGLVTLTEGLPVMLNCTYQSTY----SPFLFWYVQH   39 (194)
T ss_dssp             EECCSEEEEETTSCEEECEEEECSS----SCCEEEEEEC
T ss_pred             EecCCEEEEecCCCEEEEEEeCCCC----CceEEEEEeC
Confidence            4678999999999999999986442    2348999874

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=94.93  E-value=0.0091  Score=39.61  Aligned_cols=33  Identities=15%  Similarity=0.326  Sum_probs=24.3

Q ss_pred             cceEEeecCCeEEEeeecC-CCCCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGVD-FPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvd-fP~~~PiPYVvqW~KdG   75 (80)
                      |..+++..|+.|.|.|.+. +|.   .+..++|.|++
T Consensus         7 p~~~~v~~G~~v~L~C~~~g~p~---~~~~v~W~k~~   40 (257)
T 1f3r_B            7 SGPGLVRPSETLSLTCTVSGFSL---TSFSVSWVRHP   40 (257)
T ss_dssp             ECCSEECTTSEEEEEEEEESSCT---TTSCCEEEEEE
T ss_pred             CCCccccCCceEEEEEEEecccC---CCccEEEEEeC
Confidence            4456799999999999985 221   13459999973

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=94.93  E-value=0.027  Score=34.63  Aligned_cols=31  Identities=19%  Similarity=0.456  Sum_probs=24.6

Q ss_pred             EEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        43 ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      .++..|+.|.|.|.+  ..+.|.| -+.|.|+|.
T Consensus       114 ~~~~~g~~~~l~C~~--~~~~p~~-~i~W~~~~~  144 (212)
T 1f97_A          114 SSVTIGNRAVLTCSE--HDGSPPS-EYSWFKDGI  144 (212)
T ss_dssp             SEEETTSCEEEEEEC--SCCBSCC-EEEEEETTE
T ss_pred             cccCCCCeEEEEEEc--ccCcCCC-EEEEEeCCc
Confidence            457899999999995  2356666 589999987

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=94.92  E-value=0.0088  Score=39.87  Aligned_cols=35  Identities=11%  Similarity=0.237  Sum_probs=26.1

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      +|..+++..|++|.|.|.+.-. .. ..+.+.|.|+.
T Consensus         6 ~p~~v~v~~G~~v~L~C~~~~~-~~-~~~~v~W~r~~   40 (253)
T 3liz_H            6 ESGGGLVQPGGSLKLSCAASGF-TF-SSFAMSWGRQT   40 (253)
T ss_dssp             EECCCEECTTCCEEEEEEEESS-CG-GGSCEEEEEEC
T ss_pred             cCCCEEECCCCcEEEEEEeeCc-cc-cCceEEEEEEC
Confidence            4667889999999999998642 11 23568999863

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=94.91  E-value=0.019  Score=40.30  Aligned_cols=36  Identities=8%  Similarity=0.129  Sum_probs=27.2

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCce--EEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPY--VLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPY--VvqW~KdG~~   77 (80)
                      +|...++..|+.|.|.|.+.   +.|+|.  .+.|.|+|.+
T Consensus        92 ~~~~~~v~~G~~v~L~C~~~---g~~~~~~~~v~W~k~g~~  129 (450)
T 1z7z_I           92 APLPSWQPVGKNLTLRCQVE---GGAPRANLTVVLLRGEKE  129 (450)
T ss_dssp             CCCCSEECTTSEEEEEEEEE---CCBCGGGEEEEEEETTEE
T ss_pred             cCCCceEeeCCeEEEEEEec---CCCCCcCcEEEEeeCCEE
Confidence            44445688999999999985   444443  7999999864

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=94.90  E-value=0.016  Score=43.09  Aligned_cols=35  Identities=31%  Similarity=0.508  Sum_probs=27.9

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|..+++..|+.|.|.|.+.   |.|+| -++|.|+|.+
T Consensus       203 ~p~~~~v~~G~~~~l~C~~~---g~p~p-~i~W~k~g~~  237 (570)
T 3b43_A          203 KPVSVDLALGESGTFKCHVT---GTAPI-KITWAKDNRE  237 (570)
T ss_dssp             CCCCBCCBSBSCEEEEEEEE---SSSCC-EEEEEETTEE
T ss_pred             CCceeEecCCCeEEEEEEEE---ECCCC-EEEEEECCEE
Confidence            45556788999999999985   55655 6899999864

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=94.90  E-value=0.021  Score=35.71  Aligned_cols=33  Identities=15%  Similarity=0.271  Sum_probs=25.1

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      +|+-..|..|++|.|.|+. +|.+   +-.+.|.|..
T Consensus         6 ~~~p~~~~~G~~v~L~~~~-~p~~---~~~i~W~kg~   38 (111)
T 2qsq_A            6 ESTPFNVAEGKEVLLLVHN-LPQH---LFGYSWYKGE   38 (111)
T ss_dssp             EEESSEEETTSCEEEEEES-CCSS---EEEEEEEESS
T ss_pred             EeccceeccCCCEEEEEeC-CCCC---ceEEEEEeCC
Confidence            3444579999999999997 8853   3469998864

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=94.88  E-value=0.028  Score=37.58  Aligned_cols=33  Identities=18%  Similarity=0.427  Sum_probs=25.7

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCc----eEEEeee
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVP----YVLQWEK   73 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiP----YVvqW~K   73 (80)
                      +.|..+++..|+.|.|.|.+.   +.|.|    ..+.|.|
T Consensus       126 ~~p~~~~v~~G~~v~L~C~~~---~~~~~~~~~~~v~W~k  162 (256)
T 1nqb_A          126 QTPLSLPVSLGDQASISCRSS---QSIVHSNGNTYLEWYL  162 (256)
T ss_dssp             EECSEEEECTTCCEEEEEEES---SCCBCTTSCBCEEEEE
T ss_pred             ecCcEEEEecCCcEEEEeEec---CcccccccceEEEEEE
Confidence            357778899999999999975   33444    4689999

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=94.83  E-value=0.026  Score=41.77  Aligned_cols=35  Identities=17%  Similarity=0.413  Sum_probs=28.5

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|...++..|+.|.|.|.+.   +.|.| -++|.|+|.+
T Consensus       565 ~~~~~~v~~g~~~~l~C~~~---g~p~p-~v~W~~~g~~  599 (642)
T 1e07_A          565 SPPDSSYLSGANLNLSCHSA---SNPSP-QYSWRINGIP  599 (642)
T ss_pred             cCCceeEEcCCcEEEEEEec---cCCCC-eEEEEECCEE
Confidence            45567889999999999995   56666 6999999875

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=94.82  E-value=0.019  Score=39.02  Aligned_cols=33  Identities=18%  Similarity=0.286  Sum_probs=25.9

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      |..+++..|+.|.|.|.+.-.  ...++.+.|.|+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~--~~~~~~v~W~r~   39 (280)
T 3fku_X            7 SGAEVKKPGSSVKVSCTSSEV--TFSSFAISWVRQ   39 (280)
T ss_dssp             CCCCEECTTCCEEEEEEECCS--CCTTSCEEECCB
T ss_pred             CCCEEECCCCcEEEEEEeecc--CCCCeEEEEEEe
Confidence            788999999999999998642  123466899885

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=94.79  E-value=0.03  Score=35.28  Aligned_cols=29  Identities=10%  Similarity=0.099  Sum_probs=23.2

Q ss_pred             EeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           44 TALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        44 tA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ++..|+.|.|.|.++-+   |.  -+.|.|+|..
T Consensus        15 ~v~~G~~v~L~C~~~~~---~~--~~~W~k~g~~   43 (198)
T 1ugn_A           15 VITQGSPVTLRCQGGQE---TQ--EYRLYREKKT   43 (198)
T ss_dssp             EEETTCCEEEEEECCTT---CC--CEEEEESSSC
T ss_pred             cccCCCcEEEEEEecCC---Cc--EEEEEECCcc
Confidence            68899999999998643   32  3899999864

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=94.79  E-value=0.016  Score=39.51  Aligned_cols=34  Identities=18%  Similarity=0.423  Sum_probs=27.1

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      |...++..|+.|.|.|.+.   +.|.|- ++|.|+|.+
T Consensus       301 ~~~~~~~~g~~~~l~C~~~---g~p~p~-v~W~~~g~~  334 (382)
T 1cs6_A          301 ITDTEADIGSDLRWSCVAS---GKPRPA-VRWLRDGQP  334 (382)
T ss_dssp             CCCEEEETTCCEEEECEEE---EESCCE-EEEEETTEE
T ss_pred             CCccEEcCCCeEEEEEEee---eecCCE-EEEEECCEE
Confidence            4456789999999999984   556665 899999875

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens}

Probab=94.79  E-value=0.046  Score=33.66  Aligned_cols=31  Identities=26%  Similarity=0.432  Sum_probs=23.6

Q ss_pred             eEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           42 HITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        42 ~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      -+.|..|++|.|+|+..-|.  + ..-++|.|..
T Consensus        13 pv~~~~G~~VtL~c~~~~~~--~-~~~i~W~~~~   43 (121)
T 2edo_A           13 HMTVVSGSNVTLNISESLPE--N-YKQLTWFYTF   43 (121)
T ss_dssp             CCEEETTSCEEECCSSCCCS--S-EEEEEEEEET
T ss_pred             EEEEEeCCCEEEeCCCCCCC--c-eeEEEEEcCC
Confidence            37799999999999975442  2 3568999875

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=94.78  E-value=0.039  Score=36.13  Aligned_cols=37  Identities=22%  Similarity=0.313  Sum_probs=29.0

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .++..++...|+.|.|.|...  .+.|.| .++|.|+|.+
T Consensus         6 ~~~~~~~v~eg~~v~l~~~~~--~~~p~~-~v~W~k~~~~   42 (312)
T 2y23_A            6 TKEVVVNVDDDGVISLNFECD--KMTPKS-EFSWSKDYVS   42 (312)
T ss_dssp             CCCCEEEECTTCCEEEEEECS--SCCTTC-CEEEEETTEE
T ss_pred             ccceeEEEecCCeEEEEEEEe--CCCCCc-EEEEEECCEE
Confidence            345678899999999999998  345544 6899999875

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=94.77  E-value=0.013  Score=38.46  Aligned_cols=34  Identities=18%  Similarity=0.043  Sum_probs=27.9

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      .|...+.+.|+.|.|.|.+   .+.|.|. +.|.|+|.
T Consensus       191 ~p~~~~v~~g~~~~l~C~~---~g~P~p~-i~W~~~~~  224 (265)
T 2oz4_A          191 CPGNWTWPENSQQTPMCQA---WGNPLPE-LKCLKDGT  224 (265)
T ss_dssp             SCSEEEEETTCEECCCCCC---EEESCCE-EEEEETTT
T ss_pred             CCCccEEcCCCeEEEEeEC---ccCCCCe-EEEEECCc
Confidence            4667788999999999996   4677775 78999986

>1kxt_B Immunoglobulin VHH fragment; alpha 8 beta 8, beta barrel, hydrolase, immune system; 2.00A {Camelus dromedarius} SCOP: b.1.1.1

Probab=94.77  E-value=0.021  Score=35.48  Aligned_cols=33  Identities=15%  Similarity=0.245  Sum_probs=25.0

Q ss_pred             cceEEeecCCeEEEeeecCCC-CCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGVDFP-GDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP-~~~PiPYVvqW~KdG   75 (80)
                      |..+++..|+.|.|+|.+.-. .+   .+.+.|.|+.
T Consensus         7 p~~~~~~~G~~vtL~C~~s~~~~~---~~~v~Wyrq~   40 (127)
T 1kxt_B            7 SGGGSVQAGGSLRLSCAASGYTFS---SYPMGWYRQA   40 (127)
T ss_dssp             ECCEECCTTCCEEEEEEEC--CCS---SSCEEEEEEC
T ss_pred             CCCEEEeCCCCEEEEeEecCCCcc---ceEEEEEEEC
Confidence            667899999999999998632 22   2459999874

>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A 3qib_C 2ial_A 2iam_C 2ian_D 4e41_D 4e42_A 3rug_E* 3axl_A

Probab=94.76  E-value=0.026  Score=39.33  Aligned_cols=35  Identities=14%  Similarity=0.234  Sum_probs=29.4

Q ss_pred             CCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           36 DISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        36 ~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      ..|.|..+++..|++|.|+|.+...     .+-+.|.|+.
T Consensus         6 V~Q~p~~v~v~~G~svtL~C~~s~~-----~~~v~Wyrq~   40 (205)
T 3qjh_A            6 VEQSPSALSLHEGTGSALRCNFTTT-----MRAVQWFRKN   40 (205)
T ss_dssp             BEEECSEEEEETTCCEEEEEECSSC-----EEEEEEEEEC
T ss_pred             EEEeCCEEEEeCCCCEEEEEEEECC-----cceEEEEEEC
Confidence            4577899999999999999998765     3679999974

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=94.76  E-value=0.026  Score=35.02  Aligned_cols=33  Identities=15%  Similarity=0.022  Sum_probs=23.6

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      +|.-..+..|+.|.|.|..   .+.| +..+.|.|++
T Consensus         5 ~~~~~~v~~G~~v~L~C~~---~~~~-~~~v~W~~~~   37 (208)
T 3r4d_A            5 EAVPPQVAEDNNVLLLVHN---LPLA-LGAFAWYKGN   37 (208)
T ss_dssp             EEESSEEETTCCEEEEEEC---CCSS-CSEEEEEESS
T ss_pred             cCccceeecCCcEEEEEeC---CCCC-ceEEEeccCC
Confidence            3445678999999999992   2333 3468999874

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=94.75  E-value=0.029  Score=34.73  Aligned_cols=32  Identities=16%  Similarity=0.163  Sum_probs=23.5

Q ss_pred             EEeec-CCeEEEeeecC-CCCCCCCceEEEeeecccc
Q psy531           43 ITALL-GESVVFNCGVD-FPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        43 ltA~v-Ge~VVlnCdvd-fP~~~PiPYVvqW~KdG~~   77 (80)
                      ++.+. |+.|.|.|.+. .|.   ++..+.|.|+|.+
T Consensus        12 ~~v~~~G~~v~l~C~~~~~~~---~~~~v~W~~~~~~   45 (190)
T 2wv3_A           12 VIIRDSLLPVTLQCNLTSSSH---TLMYSYWTKNGVE   45 (190)
T ss_dssp             EECCCSSSCEEEEEEEEECSS---CEEEEEEEETTEE
T ss_pred             EEEccCCceEEEEEEeccCCC---CceEEEEEECCEE
Confidence            34444 99999999986 332   3467999999865

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=94.75  E-value=0.02  Score=37.99  Aligned_cols=32  Identities=19%  Similarity=0.411  Sum_probs=25.4

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeee
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEK   73 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~K   73 (80)
                      +.|..+++..|+.|.|.|.+.   +.|.| .+.|.|
T Consensus       144 ~~p~~~~v~~G~~v~L~C~~~---~~~~~-~v~W~k  175 (257)
T 1f3r_B          144 QSPSLLSASVGDRVTLSCKGS---QNINN-YLAWYQ  175 (257)
T ss_dssp             EETSEECCCTTCCEEEEEECS---SCCBT-CEEEEE
T ss_pred             ccCCEEEEcCCCCEEEEEEEC---CcCCC-cEEEEE
Confidence            356778899999999999985   34445 589999

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=94.70  E-value=0.0055  Score=40.60  Aligned_cols=37  Identities=11%  Similarity=0.153  Sum_probs=26.9

Q ss_pred             CcceEEeecCCeEEEeeecC--CCCCCCCceEEEeeeccccc
Q psy531           39 NAVHITALLGESVVFNCGVD--FPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvd--fP~~~PiPYVvqW~KdG~~~   78 (80)
                      .|...++..|+.|.|.|.+.  +|.+   |..+.|.|+|...
T Consensus        19 ~p~~~~v~~G~~v~L~C~~~g~~P~~---p~~v~W~~~g~~~   57 (231)
T 2w59_A           19 PPSPGELYISLDAKLRCLVVNLPSDS---SLSVTWTREKSGN   57 (231)
T ss_dssp             CCCHHHHHTSCCCEEEEEEEEESCCT---TCEEEEECSSSSC
T ss_pred             CcChhhcccCCceEEEEEEeCccCCC---CeEEEEEcCCeec
Confidence            34445578999999999985  2321   4579999998753

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=94.69  E-value=0.015  Score=38.96  Aligned_cols=30  Identities=17%  Similarity=0.385  Sum_probs=25.5

Q ss_pred             eecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           45 ALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        45 A~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +..|+.|.|.|.++   |.|.|.-++|.|+|.+
T Consensus       229 ~~~g~~v~l~C~~~---g~P~p~~v~W~~~~~~  258 (313)
T 4fqp_A          229 YLGQNEATLTCDAR---SNPEPTGYNWSTTMGP  258 (313)
T ss_dssp             ETTCCCEEEEEEEE---EESCCCEEEEEETTBS
T ss_pred             ecCCCeEEEEEEec---CCCCCcEEEEEECCEE
Confidence            45689999999985   7788888999999875

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=94.69  E-value=0.025  Score=35.56  Aligned_cols=29  Identities=17%  Similarity=0.184  Sum_probs=23.0

Q ss_pred             EeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           44 TALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        44 tA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +...|+.|.|.|..+-|     +-.+.|.|+|..
T Consensus        15 ~v~~G~~v~L~C~~~~~-----~~~~~w~k~g~~   43 (196)
T 3p2t_A           15 VISWGNSVTIWCQGTLE-----AREYRLDKEESP   43 (196)
T ss_dssp             EEETTCCEEEEEECCTT-----CCEEEEEETTSC
T ss_pred             cCCCCCcEEEEeeCCCC-----CCEEEEEECCCC
Confidence            57899999999987754     225789999865

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=94.68  E-value=0.028  Score=35.75  Aligned_cols=29  Identities=21%  Similarity=0.330  Sum_probs=22.9

Q ss_pred             EeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           44 TALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        44 tA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ++..|+.|.|.|..+.|    .| .+.|.|+|..
T Consensus       118 ~v~~G~~v~L~C~~~~~----~~-~~~w~k~g~~  146 (201)
T 1nkr_A          118 TVLAGENVTLSCSSRSS----YD-MYHLSREGEA  146 (201)
T ss_dssp             EECTTCEEEEEEEESSC----CS-EEEEEETTCS
T ss_pred             ccCCCCeEEEEEeCCCC----Cc-eEEEEECCcc
Confidence            47899999999998854    22 4789999864

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=94.68  E-value=0.019  Score=37.54  Aligned_cols=34  Identities=15%  Similarity=0.203  Sum_probs=25.2

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |..+++..|+.|.|.|.+.-..  ...+.+.|.|+.
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~--~~~~~v~W~rq~   40 (230)
T 3n9g_H            7 SGAEVRKPGASTKVSCKASGYT--FTHYYMHWVRQA   40 (230)
T ss_dssp             CCCEEECTTCCEEEEEEEESSC--GGGSCEEEEEEC
T ss_pred             cCCEEEcCCCCEEEEEEeecce--ecCcEEEEEEEC
Confidence            4568899999999999997421  123668998863

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=94.67  E-value=0.048  Score=37.04  Aligned_cols=33  Identities=24%  Similarity=0.435  Sum_probs=27.0

Q ss_pred             ceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           41 VHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        41 ~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ...++..|+.|.|.|.++   +.|.| .+.|.|+|.+
T Consensus       230 ~~~~~~~G~~v~l~C~~~---g~p~~-~v~W~~~~~~  262 (404)
T 3p3y_A          230 SSQMVLRGMDLLLECIAS---GVPTP-DIAWYKKGGD  262 (404)
T ss_dssp             EEEEEETTSCEEEECCBC---CSSCC-EEEEEETTBC
T ss_pred             CCceEecCCCEEEEEEEC---CCCCC-cEEEEECCEE
Confidence            456789999999999774   66777 7999999875

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=94.67  E-value=0.023  Score=34.73  Aligned_cols=32  Identities=31%  Similarity=0.680  Sum_probs=25.3

Q ss_pred             eEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           42 HITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        42 ~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..++..|+.|.|.|.+   .+.|.| .+.|.|+|..
T Consensus       122 ~~~~~~g~~~~l~C~~---~g~p~p-~v~W~~~~~~  153 (201)
T 3s97_C          122 DVYALMGQNVTLECFA---LGNPVP-DIRWRKVLEP  153 (201)
T ss_dssp             CEEEETTCCEEEEEEE---EEESCC-EEEEEETTBC
T ss_pred             ceEEecCCcEEEEEEc---cCCCCC-ceEEEeCCCc
Confidence            4568899999999998   355666 5799999864

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=94.66  E-value=0.025  Score=37.23  Aligned_cols=33  Identities=24%  Similarity=0.431  Sum_probs=26.5

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      +.|..+++..|+.|.|.|.+.-   .|.| .+.|.|+
T Consensus       143 ~~p~~~~v~~G~~v~L~C~~~~---~~~~-~v~W~k~  175 (256)
T 3umt_A          143 QSPSSLSASLGERVSITCRASQ---DIGS-NLNWLQQ  175 (256)
T ss_dssp             EECSEEEECTTCCEEEEEEESS---CCTT-CEEEEEE
T ss_pred             cCCCeEEEECCCCEEEEEEEec---CCCc-EEEEEEE
Confidence            4567788999999999999864   4555 6899986

>3cx5_J Heavy chain (VH) of FV-fragment; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Mus musculus} SCOP: b.1.1.1 PDB: 1kb9_J* 1kyo_J* 1p84_J* 2ibz_X* 1ezv_X* 3cxh_J*

Probab=94.63  E-value=0.026  Score=34.86  Aligned_cols=35  Identities=14%  Similarity=0.208  Sum_probs=25.6

Q ss_pred             CcceEEeecCCeEEEeeecCC-CCCCCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVDF-PGDTPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdf-P~~~PiPYVvqW~KdG   75 (80)
                      .|..+++..|+.|.|+|.+.- +...  .+.+.|.|+.
T Consensus         6 qp~~~~~~~G~~vtL~C~~s~~~~~~--~~~v~Wyrq~   41 (127)
T 3cx5_J            6 ESGAGLVQPSQSLSLTCSVTGYSITS--GYYWNWIRLF   41 (127)
T ss_dssp             EEECSEECTTSCEEEEEEEESSCTTT--SSEEEEEEEE
T ss_pred             CCCCEEEcCCCCEEEEEEEeCcccCC--CcEEEEEEEC
Confidence            366678999999999999863 2221  2569999874

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=94.62  E-value=0.018  Score=39.22  Aligned_cols=29  Identities=17%  Similarity=0.410  Sum_probs=23.1

Q ss_pred             eecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           45 ALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        45 A~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +..|+.|.|.|.+.   +.|.| -++|.|+|.+
T Consensus        19 ~~~g~~v~l~C~~~---g~p~~-~v~W~k~g~~   47 (382)
T 1cs6_A           19 GSAEEKVTLTCRAR---ANPPA-TYRWKMNGTE   47 (382)
T ss_dssp             TCSCCEEEECCEEE---EESCC-EEEEEETTEE
T ss_pred             CCCCCcEEEEEEec---CCCCC-EEEEEECCEE
Confidence            37899999999986   44444 6999999865

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=94.60  E-value=0.046  Score=35.91  Aligned_cols=32  Identities=13%  Similarity=0.241  Sum_probs=27.2

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..|..+++..|+.|.|.|.++-        -++|.|+|.+
T Consensus        17 ~~~~~~~v~~G~~v~l~C~~~~--------~i~W~~~~~~   48 (290)
T 2o26_X           17 PAQSELIVEAGDTLSLTCIDPD--------FVRWTFKTYF   48 (290)
T ss_dssp             SCSSEEEEETTSCEEEEEECTT--------EEEEEEECSS
T ss_pred             CCCCeEEEcCCCcEEEEECCCC--------cEEEecCCcc
Confidence            3667788999999999999875        6999999865

>3u6r_H Antibody 1:7 (heavy chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}

Probab=94.59  E-value=0.013  Score=38.75  Aligned_cols=35  Identities=23%  Similarity=0.249  Sum_probs=26.7

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      +|..++++.|+.|.|+|.+..+..  -.+.+.|.|+.
T Consensus         9 qp~~v~v~~G~sVtL~C~~s~~~~--~~~~v~WyrQ~   43 (149)
T 3u6r_H            9 QSGAEVKKPGSSVKVSCQVFGDTF--SRYTIQWLRQA   43 (149)
T ss_dssp             ECCCEEECTTCCEEEEEEEEESCC--CTTTEEEEEEC
T ss_pred             cCCCEEEcCCCCEEEEeEeeCCCc--CCceEEEEEEC
Confidence            577889999999999999875421  13558999873

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=94.58  E-value=0.028  Score=36.78  Aligned_cols=34  Identities=24%  Similarity=0.345  Sum_probs=25.6

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      |...++..|+.|.|.|.+.   +.|.| -++|.|+|.+
T Consensus       188 ~~~~~v~~G~~v~L~C~~~---g~p~p-~v~W~~~~~~  221 (289)
T 3mjg_X          188 AVQTVVRQGENITLMCIVI---GNEVV-NFEWTYPRKE  221 (289)
T ss_dssp             ESCSEEETTSCEEEEEEEE---SCSSB-EEEEECTTSS
T ss_pred             CCcceeEcCCCEEEEEEEC---CCCCc-ceEEEcCCcc
Confidence            3445688999999999995   35555 5899987664

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=94.56  E-value=0.016  Score=38.06  Aligned_cols=35  Identities=9%  Similarity=0.160  Sum_probs=25.6

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      +|..+++..|++|.|.|.+.-..  ..++.+.|.|+.
T Consensus        14 ~p~~~~v~~G~~v~L~C~~~~~~--~~~~~v~W~k~~   48 (257)
T 3gkz_A           14 ESGPSLVKPSQTLSLTCSVTGDS--VTSGYWSWIRQF   48 (257)
T ss_dssp             EECCSEECTTCCEEEEEEEEESC--CSSCEEEEEEEC
T ss_pred             CCCCeEEcCCCcEEEEEEEEccc--ccceEEEEEEEC
Confidence            45567799999999999986421  134568999953

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=94.56  E-value=0.037  Score=39.92  Aligned_cols=36  Identities=19%  Similarity=0.301  Sum_probs=27.7

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      -++|..+++..|+.|.|.|.+.-.. .+ ++.+.|.|+
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~~-~~-~~~v~W~r~   40 (475)
T 1iga_A            5 LEQSGAEVKKPGASVKVSCKASGYS-FT-SYGLHWVRQ   40 (475)
T ss_pred             eccCCcEEEeCCCCEEEEEEecCCC-CC-CceEEEEEe
Confidence            4578889999999999999986321 11 355999986

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=94.55  E-value=0.037  Score=34.98  Aligned_cols=29  Identities=24%  Similarity=0.369  Sum_probs=22.8

Q ss_pred             EeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           44 TALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        44 tA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +...|+.|.|.|....|    .| .+.|.|+|..
T Consensus       109 ~v~~G~~v~L~C~~~~~----~~-~~~w~k~g~~  137 (188)
T 1oll_A          109 EVISGEKVTFYCRLDTA----TS-MFLLLKEGRS  137 (188)
T ss_dssp             EEETTCEEEEEEECSSS----CS-EEEEEEESSS
T ss_pred             ccccCCEEEEEEEcCCC----CC-EEEEEECCcc
Confidence            36889999999997644    23 5899999864

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=94.55  E-value=0.006  Score=41.27  Aligned_cols=31  Identities=16%  Similarity=0.051  Sum_probs=24.4

Q ss_pred             eecCCeEEEeeecCCCCCC--CCceEEEeeecccc
Q psy531           45 ALLGESVVFNCGVDFPGDT--PVPYVLQWEKKIVK   77 (80)
Q Consensus        45 A~vGe~VVlnCdvdfP~~~--PiPYVvqW~KdG~~   77 (80)
                      +..|+.|.|.|.+.  ...  |.|+-|.|.|+|..
T Consensus        29 v~~G~~v~L~C~~~--g~~~~P~~~~v~W~k~~~~   61 (239)
T 1i1c_A           29 LGGGLTPKVTCVVV--DISQNDPEVRFSWFIDDVE   61 (239)
T ss_dssp             TTSSSCCEEEEEEE--EECTTCCCCEEEEEESSCE
T ss_pred             cccCCcEEEEEEEe--cCccCCCCCEEEEEECCcc
Confidence            67999999999986  122  66778999999853

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=94.52  E-value=0.065  Score=37.16  Aligned_cols=38  Identities=21%  Similarity=0.248  Sum_probs=28.2

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ...+..++++.|+.|.|.|.+...   +++..+.|.|+|..
T Consensus        10 ~~p~~~v~~~~G~~v~l~C~~~~~---~~~~~i~W~~~~~~   47 (325)
T 1n26_A           10 EVARGVLTSLPGDSVTLTCPGVEP---EDNATVHWVLRKPA   47 (325)
T ss_dssp             CCCTTEEEECTTCCEEEECTTSCT---TCCSEEEEEEECSS
T ss_pred             ccCCCcEECCCCCcEEEEeCCCCC---CCCceEEEEECCcc
Confidence            445556667999999999998742   34456899998754

>3r0m_A Llama VHH A12; IG domain, immune system; 1.50A {Lama glama} PDB: 3rjq_B* 1g9e_A 1hcv_A 1shm_A 3qxw_A 3qxv_A

Probab=94.50  E-value=0.035  Score=36.41  Aligned_cols=36  Identities=14%  Similarity=0.191  Sum_probs=28.1

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      ++|..+++..|+.|.|+|.+.....  -.+-+.|.|+.
T Consensus         5 ~q~~~~~v~~G~svtL~C~~s~~~~--~~~~v~WyrQ~   40 (143)
T 3r0m_A            5 QESGGGLVQAGGSLRLSCTASGRIS--SSYDMGWFRQA   40 (143)
T ss_dssp             EEECCEEEETTCCEEEEEEESSCCC--TTEEEEEEEEC
T ss_pred             EeCCcEEEccCCCEEEEEEeeCCCc--CCcEEEEEEEC
Confidence            3577888999999999999875421  25779999874

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=94.49  E-value=0.02  Score=37.28  Aligned_cols=35  Identities=9%  Similarity=0.040  Sum_probs=25.5

Q ss_pred             cceEEeecCCeEEEeeecCCC-CCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGVDFP-GDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP-~~~PiPYVvqW~KdG   75 (80)
                      |+.+++..|+.|.|.|.+.-. .+.. ++.+.|.|+.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~-~~~v~W~r~~   42 (228)
T 3bae_H            7 SGPGLLKPSQTLSLTCSFSGFSIRTS-KVGVSWIRQP   42 (228)
T ss_dssp             ECCSEECTTCCEEEEEEEESSCHHHH-CCEEEEEEEE
T ss_pred             CCceeecCCCeEEEEEEEeCcccCCC-ceeEEEEEEC
Confidence            677889999999999999632 1110 1568999864

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=94.48  E-value=0.028  Score=38.29  Aligned_cols=32  Identities=16%  Similarity=0.368  Sum_probs=25.3

Q ss_pred             eEEeecCCeEEEeeecCCCCCCCCceEEEeee-cccc
Q psy531           42 HITALLGESVVFNCGVDFPGDTPVPYVLQWEK-KIVK   77 (80)
Q Consensus        42 ~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~K-dG~~   77 (80)
                      .++.+.|+.|.|.|.+.   |.|.| -++|.| +|..
T Consensus        13 ~~~~~~G~~v~l~C~~~---g~p~p-~v~W~k~~g~~   45 (388)
T 2v5m_A           13 RIDFSNSTGAEIECKAS---GNPMP-EIIWIRSDGTA   45 (388)
T ss_dssp             EEEEETTTCEEEECEEE---EESCC-EEEEEETTSCB
T ss_pred             eEEEEcCccEEEEEECC---CCCCC-EEEEEcCCCCc
Confidence            46688999999999984   45555 589999 7754

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=94.47  E-value=0.013  Score=37.68  Aligned_cols=30  Identities=17%  Similarity=0.284  Sum_probs=23.1

Q ss_pred             eecCCeEEEeeecCCCCCCC---CceEEEeeecccc
Q psy531           45 ALLGESVVFNCGVDFPGDTP---VPYVLQWEKKIVK   77 (80)
Q Consensus        45 A~vGe~VVlnCdvdfP~~~P---iPYVvqW~KdG~~   77 (80)
                      +..|+.|.|.|.+.   +.+   +..-|.|.|+|.+
T Consensus        15 ~~~G~~v~L~C~~~---g~~p~~~~~~v~W~k~~~~   47 (207)
T 1l6x_A           15 LMISRTPEVTCVVV---DVSHEDPEVKFNWYVDGVE   47 (207)
T ss_dssp             HCTTSCCEEEEEEE---EECSSSCCCEEEEEETTEE
T ss_pred             eecCCceEEEEEEe---cccCCCCCeEEEEEECCcc
Confidence            37899999999986   222   2368999999864

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=94.45  E-value=0.041  Score=36.23  Aligned_cols=36  Identities=17%  Similarity=0.369  Sum_probs=27.3

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .+.|..+++..|+.|.|.|.+..   ..++..+.|.|++
T Consensus       140 ~~~p~~~~v~~G~~v~L~C~~~~---~~~~~~v~W~k~~  175 (259)
T 3omz_A          140 TQAQSSVSMPVRKAVTLNCLYET---SWWSYYIFWYKRL  175 (259)
T ss_dssp             ECCCCCEEEETTCCEEECCEEEC---CCSSCEEEEEEEC
T ss_pred             EEeCCEEEEcCCCCEEEEEECCC---ccCCceEEEeeeC
Confidence            45677889999999999997653   2234568999864

>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo sapiens} PDB: 2nx5_D 4dzb_A

Probab=94.44  E-value=0.049  Score=36.56  Aligned_cols=35  Identities=26%  Similarity=0.269  Sum_probs=27.5

Q ss_pred             CCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           36 DISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        36 ~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      ..| |..+++..|++|.|+|.+.....   + -+.|.|+.
T Consensus         3 v~Q-p~~~~v~~G~~vtL~C~~s~~~~---~-~v~Wyrq~   37 (200)
T 2nw2_A            3 IDQ-PTEMTATEGAIVQINCTYQTSGF---N-GLFWYQQH   37 (200)
T ss_dssp             CBC-CSEEEEETTCCEEEEEECCCSSC---C-CEEEEEEC
T ss_pred             eEC-CCeEEEccCCCEEEEEEECCCCC---c-eEEEEEeC
Confidence            356 89999999999999999865421   2 38999874

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=94.43  E-value=0.019  Score=39.60  Aligned_cols=34  Identities=18%  Similarity=0.390  Sum_probs=25.7

Q ss_pred             CcceEEeecCCeEEEeeecC-CCCCCCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVD-FPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvd-fP~~~PiPYVvqW~KdG   75 (80)
                      .|..+++..|+.|.|.|.+. +|.+   .+.+.|.|+.
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~---~~~v~W~r~~   40 (257)
T 3bn9_D            6 QSGGGLVKPGGSLRLSCAASGFTFS---SYAMSWVRQA   40 (257)
T ss_dssp             EECCEEECTTCEEEEEEEEESSCGG---GCCEEEEEEC
T ss_pred             ccCCEEEcCCCcEEEEEEeccccCC---CceEEEEEEC
Confidence            46667899999999999986 3312   3559999874

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=94.43  E-value=0.024  Score=37.26  Aligned_cols=34  Identities=15%  Similarity=0.206  Sum_probs=25.0

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |..+++..|+.|.|+|.+.-. . ...+.+.|.|+.
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~-~-~~~~~v~W~rq~   40 (226)
T 3mlr_H            7 SGGEVKQPGQSLKISCKSSGY-N-FLDSWIGWVRQI   40 (226)
T ss_dssp             CCCEEECTTCCEEEEEEEESS-C-GGGSCEEEEEEC
T ss_pred             CCCEEEecCCCEEEEEEecCc-c-ccCCEEEEEEEC
Confidence            446889999999999998632 1 123668999863

>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus musculus} PDB: 3c60_A

Probab=94.41  E-value=0.038  Score=38.35  Aligned_cols=34  Identities=18%  Similarity=0.221  Sum_probs=28.4

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      .|.|..+++..|++|.|+|.+....    ++-+.|.|+
T Consensus         4 tQ~p~~v~v~~G~svtL~C~~s~~~----~~~v~Wyrq   37 (200)
T 3rgv_A            4 TQMQGQVTLSENDFLFINCTYSTTG----YPTLFWYVQ   37 (200)
T ss_dssp             ECCCSEEEEETTCCEEECCEEECSS----CCEEEEEEE
T ss_pred             EECCCEEEEeCCCCEEEEEEecCCC----CcEEEEEEe
Confidence            4789999999999999999987652    246899997

>1smo_A Triggering receptor expressed on myeloid cells 1; activating receptors, TREM-1, innate immune system receptor, system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1

Probab=94.38  E-value=0.013  Score=36.73  Aligned_cols=35  Identities=9%  Similarity=0.057  Sum_probs=26.7

Q ss_pred             CCCcceEEeecCCeEEEeeecC-CCCCCCCceEEEeeec
Q psy531           37 ISNAVHITALLGESVVFNCGVD-FPGDTPVPYVLQWEKK   74 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvd-fP~~~PiPYVvqW~Kd   74 (80)
                      .+.|..+++..|++|-|+|... .....   |.+.|.|+
T Consensus         3 ~q~~~~~~~~~G~svtl~C~~s~~~~~~---~~~~Wyrq   38 (119)
T 1smo_A            3 KLTEEKYELKEGQTLDVKCDYTLEKFAS---SQKAWQII   38 (119)
T ss_dssp             EESEEEEECCTTCCEEEEEECCHHHHTT---SCEEEEEE
T ss_pred             ccCCCcEEEcCCCCEEEEEEEeCCcCCC---cEEEEEEe
Confidence            4678899999999999999986 22222   34779987

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=94.37  E-value=0.023  Score=38.58  Aligned_cols=35  Identities=20%  Similarity=0.374  Sum_probs=27.5

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|...++..|+.|.|.|.++   +.|.| .++|.|+|..
T Consensus       318 ~~~~~~v~~g~~~~l~C~~~---g~p~p-~v~W~~~g~~  352 (404)
T 3p3y_A          318 EPKNLILAPGEDGRLVCRAN---GNPKP-TVQWMVNGEP  352 (404)
T ss_dssp             CCCCEEECTTCCEEEECEEE---EESCC-EEEEEETTEE
T ss_pred             cCCcceeecCCcEEEEEEcc---ccCCC-ceEEEECCEe
Confidence            45557788999999999985   45555 4999999865

>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D 3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A

Probab=94.32  E-value=0.055  Score=36.28  Aligned_cols=35  Identities=14%  Similarity=0.289  Sum_probs=27.0

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .| |..+++..|+.|.|+|.+......  + -+.|.|+.
T Consensus         4 ~Q-p~~~~v~~G~~v~L~C~~s~~~~~--~-~v~Wyrq~   38 (206)
T 1kgc_D            4 TQ-PNSMESNEEEPVHLPCNHSTISGT--D-YIHWYRQL   38 (206)
T ss_dssp             EC-CSEEEEETTSCEEEEEEESCCCTT--C-CEEEEEEC
T ss_pred             EC-CCeEEEcCCCCEEEEEEEcCCCCC--c-cEEEEEEC
Confidence            46 889999999999999999652222  2 48998874

>1mqk_H Antibody 7E2 FV fragment, heavy chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_C 3ehb_C* 3hb3_C* 1qle_H* 2otu_B 2gsg_B 2otw_B 1qfw_I* 3ab0_B 1i8k_B 1i8i_B 1vhp_A 1bfv_H* 1cfv_H* 2bfv_H* 1dsf_H

Probab=94.30  E-value=0.02  Score=35.35  Aligned_cols=34  Identities=15%  Similarity=0.237  Sum_probs=25.1

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |..+++..|++|.|+|.+.-... . .+-+.|.|+.
T Consensus         7 ~~~~~~~~G~~vtL~C~~s~~~~-~-~~~v~Wyrq~   40 (127)
T 1mqk_H            7 SGGDLVQPGGSLKLSCAASGFTF-S-SYTMSWVRQT   40 (127)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCG-G-GSCEEEEEEC
T ss_pred             CCCEEEcCCCCEEEEEEeCCCcc-C-CcEEEEEEEC
Confidence            45688999999999999963211 1 3559999874

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=94.23  E-value=0.024  Score=43.20  Aligned_cols=31  Identities=16%  Similarity=0.365  Sum_probs=24.4

Q ss_pred             EEeecCCeEEEeeecCCCCCCCCceEEEeee-cccc
Q psy531           43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEK-KIVK   77 (80)
Q Consensus        43 ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~K-dG~~   77 (80)
                      ++.+.|+.|.|+|...   |.|.|- ++|.| +|..
T Consensus        49 ~~~~~g~~~~l~C~a~---g~p~p~-~~W~k~~g~~   80 (816)
T 3dmk_A           49 IDFSNSTGAEIECKAS---GNPMPE-IIWIRSDGTA   80 (816)
T ss_dssp             EEEETTTCEEEECEEE---EESCCE-EEEEETTSCB
T ss_pred             EEEECCCCeEEEeeec---CCCCCE-EEEEeCCCCC
Confidence            5688899999999986   444454 99999 7754

>1jtp_A Single-domain antibody; immunoglobulin, heavy chain antibody, VHH, interface, binding, antibody, hydrolase; 1.90A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 1jto_A 1mel_A 2x89_A

Probab=94.22  E-value=0.043  Score=35.42  Aligned_cols=34  Identities=18%  Similarity=0.297  Sum_probs=25.6

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |..+++..|++|.|+|.+..... . .+-+.|.|+.
T Consensus         7 p~~~~v~~G~svtL~C~~s~~~~-~-~~~v~Wyrq~   40 (148)
T 1jtp_A            7 SGGGSVQAGGSLRLSCAASGYTI-G-PYCMGWFRQA   40 (148)
T ss_dssp             ECCEEEETTCCEEEEEEEESCSS-C-CSEEEEEEEC
T ss_pred             cCCEEEecCCCEEEEEEEeCccC-C-CCEEEEEEEC
Confidence            66789999999999999863211 1 3568999974

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=94.21  E-value=0.034  Score=36.53  Aligned_cols=33  Identities=30%  Similarity=0.446  Sum_probs=26.6

Q ss_pred             ceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           41 VHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        41 ~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..+++..|+.|.|.|.++   +.|.| .++|.|+|..
T Consensus       112 ~~~~~~~g~~~~l~C~~~---g~p~p-~i~W~~~~~~  144 (305)
T 2nzi_A          112 GAVHALRGEVVSIKIPFS---GKPDP-VITWQKGQDL  144 (305)
T ss_dssp             CCEEEETTCCEEEEEEEE---EESCC-EEEEEESSSB
T ss_pred             ccEEecCCCEEEEEEEEC---CCCCC-EEEEEECCEE
Confidence            456788999999999985   55666 6899998864

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=94.20  E-value=0.057  Score=36.07  Aligned_cols=31  Identities=39%  Similarity=0.650  Sum_probs=25.6

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeee
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEK   73 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~K   73 (80)
                      .|...++..|+.|.|.|.+.   +.|.| -++|.|
T Consensus       228 ~~~~~~~~~G~~v~l~C~~~---g~p~p-~v~W~~  258 (334)
T 1ry7_B          228 LPANQTAVLGSDVEFHCKVY---SDAQP-HIQWLK  258 (334)
T ss_dssp             CSCCEEEESSCCEEECCCCB---CSSCE-EEEEEE
T ss_pred             CCCceEEeCCCCEEEEEEEe---cCCCC-eEEEEE
Confidence            45667899999999999985   56666 689999

>1zvh_A Immunoglobulin heavy chain antibody variable domain; beta sandwich, immunoglobulin fold, protein-protein heterocomplex; 1.50A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 3dwt_A 1g6v_K 1zv5_A 1kxq_E

Probab=94.17  E-value=0.023  Score=35.82  Aligned_cols=33  Identities=15%  Similarity=0.187  Sum_probs=25.8

Q ss_pred             cceEEeecCCeEEEeeecCCC-CCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGVDFP-GDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP-~~~PiPYVvqW~KdG   75 (80)
                      |..+++..|++|.|+|.+... .+   .+.+.|.|+.
T Consensus         7 p~~~~v~~G~~vtL~C~~s~~~~~---~~~v~Wyrq~   40 (134)
T 1zvh_A            7 SGGGSVQAGGSLRLSCAASGYIAS---INYLGWFRQA   40 (134)
T ss_dssp             ECCEEECTTCCEEEEEEEEESGGG---EEEEEEEEEC
T ss_pred             CCCEEEccCCCEEEEEEeCCCCcC---CcEEEEEEEC
Confidence            667899999999999998632 22   3679999874

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=94.12  E-value=0.038  Score=36.32  Aligned_cols=35  Identities=14%  Similarity=0.300  Sum_probs=26.8

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      .+.|..+++..|+.|.|.|.+.-   .|.+..+.|.|+
T Consensus       153 ~~~~~~~~v~~G~~v~L~C~~~~---~~~~~~v~W~k~  187 (256)
T 3juy_B          153 TQAPGTLSLSPGERATFSCRSSH---SIRSRRVAWYQH  187 (256)
T ss_dssp             EEECSEEEECTTSCEEEEEEESS---CCTTCCEEEEEE
T ss_pred             EecCCeEEEeCCCCEEEEEEECC---CcCCeeEEEEEE
Confidence            34577788999999999999865   333356899884

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=94.11  E-value=0.081  Score=35.67  Aligned_cols=38  Identities=21%  Similarity=0.173  Sum_probs=28.0

Q ss_pred             CcceEEeecCCeEEEeee-cCCC-CCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCG-VDFP-GDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCd-vdfP-~~~PiPYVvqW~KdG~~   77 (80)
                      .|...+...|+.+.|.|. ++.. .+.|.| -++|.|+|.+
T Consensus       126 ~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~-~v~W~k~~~~  165 (349)
T 4dep_C          126 LPVHKLYIEYGIQRITCPNVDGYFPSSVKP-TITWYMGCYK  165 (349)
T ss_dssp             CCEEEEETTCSEEEEECCSCTTSSCTTSCC-EEEEEETTEE
T ss_pred             cCcceeeecCccEEEEcCCCcccccCCCCc-eEEEeeCCEE
Confidence            356678899999999995 4443 455554 5899999875

>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell repertoire, auto-immunity, I system; HET: NAG; 3.50A {Homo sapiens} SCOP: b.1.1.1

Probab=94.08  E-value=0.014  Score=39.43  Aligned_cols=34  Identities=21%  Similarity=0.339  Sum_probs=25.2

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|.|..+++..|+.|.|+|.+....     +-+.|.|+.
T Consensus         5 ~Q~p~~v~v~~G~~v~L~C~~s~~~-----~~v~W~rq~   38 (207)
T 1ymm_D            5 EEDPQALSIQEGENATMNCSYKTSI-----NNLQWYRQN   38 (207)
T ss_dssp             ----CCCCCSSCCCCCBCCBCSSCE-----EEEEEECCC
T ss_pred             EECCCEEEEeCCCCEEEEEEecCCC-----ceEEEEEEC
Confidence            5678889999999999999986432     569999874

>3iy0_H FAB 14, heavy domain; cryoem, neutralizing antibody, parvovirus, canine, feline, FAB footprint, immune system; 12.50A {Mus musculus}

Probab=94.07  E-value=0.023  Score=34.90  Aligned_cols=34  Identities=18%  Similarity=0.269  Sum_probs=25.5

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |..+++..|+.|.|+|.+..+..  -.+-+.|.|+.
T Consensus         7 ~~~~~v~~G~~vtL~C~~s~~~~--~~~~~~Wyrq~   40 (120)
T 3iy0_H            7 SGTELVAPGGGVKLSCGASGYTF--TNYDMNWVRQR   40 (120)
T ss_dssp             CCCEEECSSCCEEEEEEEESSCG--GGSCEEEEEEE
T ss_pred             cCCEEecCCCCEEEEEEeECCCc--cCCeEEEEEEC
Confidence            44588999999999999875421  13569999873

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=94.06  E-value=0.02  Score=40.60  Aligned_cols=36  Identities=22%  Similarity=0.280  Sum_probs=26.5

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      ++|..+++..|+.|.|.|.+.-.. . .++.++|.|++
T Consensus         4 ~~~~~~~v~~G~~v~L~C~~~~~~-~-~~~~v~W~k~~   39 (434)
T 1igy_B            4 QESGAELARPGASVKMSCKASGYT-F-TTYTIHWIKQR   39 (434)
T ss_dssp             ECCCCCEECTBCCEEECCEECSSC-G-GGCCCEEEEEC
T ss_pred             ECCCCeEecCCCCEEEEEEccCCc-c-cCceEEEEEEC
Confidence            356677899999999999986321 1 24559999873

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=94.03  E-value=0.048  Score=40.57  Aligned_cols=35  Identities=17%  Similarity=0.228  Sum_probs=26.7

Q ss_pred             CcceEEeecCCeEEEeeecCC-CCCCCCceEEEeeec
Q psy531           39 NAVHITALLGESVVFNCGVDF-PGDTPVPYVLQWEKK   74 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdf-P~~~PiPYVvqW~Kd   74 (80)
                      .|..+++..|+.|.|.|.+.- |.+.. .+.++|.|+
T Consensus         6 qp~~v~v~~G~~v~L~C~~~~~~~~~~-~~~v~W~rq   41 (512)
T 1zvo_C            6 ESGPGLVKPSETLSLTCIVSGGPIRRT-GYYWGWIRQ   41 (512)
T ss_pred             CCCCEEEcCCCCEEEEEEEcccccCCC-CeeEEEEEe
Confidence            477899999999999999973 32221 256899987

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=94.03  E-value=0.016  Score=40.97  Aligned_cols=34  Identities=15%  Similarity=0.197  Sum_probs=25.5

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      .|+.+++..|+.|.|.|.+.-..  +.++.+.|.|+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~--~~~~~v~W~r~   39 (444)
T 1igt_B            6 ESGGGLVQPGGSLKLSCATSGFT--FSDYYMYWVRQ   39 (444)
T ss_dssp             EECCCEECTTCCEEEEEEEESSC--GGGSCEEEEEE
T ss_pred             cCCCeEEcCCCCEEEEEEcCCCc--cCCceEEEEEe
Confidence            46667899999999999995321  12456999886

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=94.01  E-value=0.032  Score=38.04  Aligned_cols=38  Identities=24%  Similarity=0.205  Sum_probs=28.4

Q ss_pred             cceEEeecCCeEEEeeecCCCCC-----CCCceEEEeeecccc
Q psy531           40 AVHITALLGESVVFNCGVDFPGD-----TPVPYVLQWEKKIVK   77 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~-----~PiPYVvqW~KdG~~   77 (80)
                      ...+.+..||.|+|.|.+.-...     ..++.-+.|.|+|..
T Consensus        36 ~~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~   78 (329)
T 3oq3_B           36 TMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKT   78 (329)
T ss_dssp             EEEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSS
T ss_pred             cceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCC
Confidence            35667999999999999865322     124567999999864

>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ...

Probab=93.99  E-value=0.039  Score=38.69  Aligned_cols=36  Identities=11%  Similarity=0.134  Sum_probs=29.3

Q ss_pred             CCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           36 DISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        36 ~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      ..|.|..++++.|++|.|+|.+....    ++.+.|.|+.
T Consensus         5 V~Q~p~~v~v~~G~sVtL~C~~s~~~----~~~v~Wyrq~   40 (208)
T 4ei6_A            5 VQQSPESLSVPEGGMASLNCTSSDRN----FQYFWWYRQH   40 (208)
T ss_dssp             EEEECSEEEEETTCCEECEEEECCTT----EEEEEEEEEC
T ss_pred             EEEeCCEEEEECCCCEEEEEEEcCCC----CceEEEEEeC
Confidence            35778999999999999999987541    3568999974

>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C* 3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C* 3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C* 3sdc_C* ...

Probab=93.98  E-value=0.039  Score=38.13  Aligned_cols=35  Identities=23%  Similarity=0.405  Sum_probs=27.4

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|.|..+++..|++|.|+|.+.....    +.+.|.|+.
T Consensus         5 ~Q~p~~v~v~~G~svtL~C~~s~~~~----~~v~Wyrq~   39 (229)
T 2q86_A            5 EQSPQSLVVRQGENCVLQCNYSVTPD----NHLRWYKQD   39 (229)
T ss_dssp             EEECSEEEEETTCCEEEEEEECCSCC----SCEEEEEEC
T ss_pred             EECCCEEEEecCCCEEEEEEECCCCC----cEEEEEEEC
Confidence            45688899999999999999864421    348999874

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=93.98  E-value=0.016  Score=38.52  Aligned_cols=31  Identities=19%  Similarity=0.385  Sum_probs=26.2

Q ss_pred             EeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           44 TALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        44 tA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +...|+.|.|.|.++   +.|.|..++|.|+|.+
T Consensus       223 ~~~~g~~v~l~C~~~---g~P~p~~v~W~k~~~~  253 (308)
T 4fom_A          223 WFVGRKGVNLKCNAD---ANPPPFKSVWSRLDGQ  253 (308)
T ss_dssp             EETTCCSCEEECCEE---EESCEEEEECCBSSSC
T ss_pred             eeeccccEEEEEEEe---cCCCCcEEEEEECCeE
Confidence            466789999999985   7888988999998764

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=93.93  E-value=0.037  Score=39.41  Aligned_cols=34  Identities=18%  Similarity=0.257  Sum_probs=24.8

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      .|..+++..|+.|.|.|.+.-...  -++.++|.|+
T Consensus         6 ~~~~~~v~~G~~v~L~C~~~~~~~--~~~~v~W~k~   39 (457)
T 1hzh_H            6 QSGAEVKKPGASVKVSCQASGYRF--SNFVIHWVRQ   39 (457)
T ss_dssp             ECCCEEECTTCCEEECEEEESSCG--GGSCEEEEEE
T ss_pred             cCCceEEcCCCCEEEEEEecCccc--cCcEEEEEEe
Confidence            355688999999999999863211  1345999985

>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I immune system; HET: NAG; 2.89A {Mus musculus}

Probab=93.90  E-value=0.036  Score=39.52  Aligned_cols=34  Identities=15%  Similarity=0.240  Sum_probs=28.1

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|.|..+++..|++|.|+|.+...     .+-+.|.|+.
T Consensus         5 ~Q~p~~v~v~~G~sVtL~C~~s~~-----~~~v~Wyrq~   38 (229)
T 3mbe_C            5 EQNPPALSLYEGADSGLRCNFSTT-----MKSVQWFQQN   38 (229)
T ss_dssp             EEECSEEEEETTCCEEEEEEESSC-----CSCEEEEEEC
T ss_pred             EEcCCEEEEEcCCCEEEEEEEeCC-----CcEEEEEEEC
Confidence            567899999999999999998765     2458999873

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=93.89  E-value=0.029  Score=39.16  Aligned_cols=34  Identities=26%  Similarity=0.499  Sum_probs=27.2

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +...++..|+.|.|.|.+.   |.|.| .++|.|+|.+
T Consensus       302 ~~~~~v~~g~~v~l~C~~~---g~P~p-~i~W~k~g~~  335 (384)
T 3kld_A          302 INDIHVAMEESVFWECKAN---GRPKP-TYRWLKNGDP  335 (384)
T ss_dssp             CCCEEECTTCCEEEECEEE---EESCC-EEEEEETTEE
T ss_pred             CCceEecCCCCEEEEeECC---ccCCC-eEEEEECCEE
Confidence            4456788999999999986   56666 4799999875

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=93.88  E-value=0.043  Score=39.53  Aligned_cols=32  Identities=13%  Similarity=0.214  Sum_probs=25.0

Q ss_pred             EEeecCCeEEEeeecCCCCCCCC-ceEEEeeecccc
Q psy531           43 ITALLGESVVFNCGVDFPGDTPV-PYVLQWEKKIVK   77 (80)
Q Consensus        43 ltA~vGe~VVlnCdvdfP~~~Pi-PYVvqW~KdG~~   77 (80)
                      .++..|+.|.|.|.+.   +.|+ |.-+.|.|+|.+
T Consensus       124 ~~~~~g~~v~l~C~~~---g~~p~~~~v~W~k~g~~  156 (523)
T 2rcj_C          124 SEELQANKATLVCLIS---DFYPGAVTVAWKADGSP  156 (523)
T ss_pred             ccccCCCceEEEEEec---cccCCceEEEEecCCCC
Confidence            3456799999999986   4444 478999999865

>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like domain, immunoglobulin-like, immune system receptor; HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1

Probab=93.85  E-value=0.039  Score=35.92  Aligned_cols=36  Identities=8%  Similarity=0.100  Sum_probs=27.8

Q ss_pred             CCCCcceEEeecCCeEEEeeecCCC-CCCCCceEEEeeec
Q psy531           36 DISNAVHITALLGESVVFNCGVDFP-GDTPVPYVLQWEKK   74 (80)
Q Consensus        36 ~~~~P~~ltA~vGe~VVlnCdvdfP-~~~PiPYVvqW~Kd   74 (80)
                      ..|.|..+++..|++|-|+|..+-. ..   -|.+.|.|+
T Consensus         7 v~Q~p~~vs~~~G~svtL~C~~s~~~~~---~~~~~WyrQ   43 (127)
T 1q8m_A            7 TKLTEEKYELKEGQTLDVKCDYTLEKFA---SSQKAWQII   43 (127)
T ss_dssp             EEECEEEEEEETTCCEEEEEECCCGGGT---TSCEEEEEE
T ss_pred             EEecCCEEEEecCCCEEEEEEECCcccC---CCEEEEEEe
Confidence            4678999999999999999997622 22   255789886

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=93.78  E-value=0.025  Score=38.28  Aligned_cols=36  Identities=14%  Similarity=0.174  Sum_probs=26.7

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      ++|..++++.|+.|.|.|.+.-. .. ..+.+.|.|+.
T Consensus         4 ~~~~~v~v~~G~~v~L~C~~s~~-~~-~~~~v~W~rq~   39 (248)
T 3u2s_H            4 VESGGGVVQPGSSLRLSCAASGF-DF-SRQGMHWVRQA   39 (248)
T ss_dssp             EEECCEEECTTCCEEEEEEEESS-CG-GGSCEEEEEEC
T ss_pred             ecCCCEEEeCCCCEEEEEEeccc-cC-CccEEEEEEEC
Confidence            35677889999999999999632 11 23568998863

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=93.76  E-value=0.042  Score=35.23  Aligned_cols=33  Identities=18%  Similarity=0.310  Sum_probs=24.6

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCC-ceEEEeeec
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPV-PYVLQWEKK   74 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~Pi-PYVvqW~Kd   74 (80)
                      .|...++..|+.|.|.|.+.   +.|. +..+.|.|+
T Consensus       125 ~~~~~~v~~G~~v~L~C~~~---g~p~~~~~v~W~k~  158 (240)
T 1moe_A          125 QSGAELVEPGASVKLSCTAS---GFNIKDTYMHWVKQ  158 (240)
T ss_dssp             ECCCEEECTTCCEEEEEEEE---SSCGGGSCEEEEEE
T ss_pred             CCCceEEeCCCcEEEEEEEc---CccCCCCEEEEEEE
Confidence            35556789999999999986   2222 245899996

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=93.76  E-value=0.049  Score=40.30  Aligned_cols=34  Identities=15%  Similarity=0.290  Sum_probs=26.6

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      |...+...|+.+.|.|.+   .+.|.| -++|.|+|..
T Consensus       210 ~~~~~~~~G~~~~l~C~~---~g~p~~-~i~W~~~g~~  243 (642)
T 1e07_A          210 PLNTSYRSGENLNLSCHA---ASNPPA-QYSWFVNGTF  243 (642)
T ss_pred             cCCcccccCCEEEEEEEc---CCCCCc-EEEEEECCeE
Confidence            344567899999999999   456665 6899999865

>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus, PP65, T cell receptor (TCR), immune response, public response; 2.80A {Homo sapiens}

Probab=93.76  E-value=0.041  Score=38.09  Aligned_cols=35  Identities=20%  Similarity=0.369  Sum_probs=28.3

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|.|..++++.|++|.|+|.+....    .+.+.|.|+.
T Consensus         4 ~Q~p~~v~v~~G~svtL~C~~s~~~----~~~v~Wyrq~   38 (199)
T 3gsn_A            4 EQSPQSLHVQEGDSTNFTCSFPSSN----FYALHWYRWE   38 (199)
T ss_dssp             EEECSEEEEETTCCCEEEEECCCTT----CCCEEEEEEC
T ss_pred             EECCCEEEEeCCCCEEEEEEEcCCC----CCEEEEEEEC
Confidence            4678999999999999999987652    2358999873

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=93.75  E-value=0.055  Score=35.40  Aligned_cols=30  Identities=17%  Similarity=0.438  Sum_probs=24.8

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +..++...|+.|.|.|.+.-+        ++|.|+|..
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~--------v~W~~~~~~   36 (289)
T 3mjg_X            7 GPELVLNVSSTFVLTCSGSAP--------VVWERMSQE   36 (289)
T ss_dssp             CSEEECCTTCCEEEEEEESSC--------CEEEBTTBC
T ss_pred             CCeEEEeCCCcEEEEEeccce--------EEEECCCCC
Confidence            345679999999999998743        899999875

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=93.75  E-value=0.04  Score=38.64  Aligned_cols=35  Identities=23%  Similarity=0.355  Sum_probs=28.2

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEE----Eeeeccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVL----QWEKKIV   76 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVv----qW~KdG~   76 (80)
                      .+|+..++..|+.|.|.|.++-    |.|.++    +|.|++.
T Consensus         4 ~~P~~~~v~~G~~v~L~C~~~g----p~p~~~~~~~~w~k~~~   42 (450)
T 1z7z_I            4 VSPSKVILPRGGSVLVTCSTSC----DQPMLLGIETPLPKKEL   42 (450)
T ss_dssp             EESSEEEEETTEEEEEEEECCS----SCCCEEEECSSSCEEEC
T ss_pred             cCCCceEEecCCcEEEEEEccC----CCcccccccceeeecce
Confidence            4688889999999999999865    445543    8999986

>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=92.81  E-value=0.012  Score=40.03  Aligned_cols=35  Identities=17%  Similarity=0.421  Sum_probs=27.5

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|.|..+++..|++|.|+|.+.-.   +.+ -+.|.|+.
T Consensus         4 ~Q~p~~v~v~~G~svtL~C~~s~~---~~~-~v~Wyrq~   38 (185)
T 3c6l_A            4 RQSPQSLTVWEGETAILNCSYEDS---TFD-YFPWYHQF   38 (185)
Confidence            567899999999999999998532   123 48999874

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=93.71  E-value=0.064  Score=33.99  Aligned_cols=30  Identities=40%  Similarity=0.705  Sum_probs=24.1

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeee
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEK   73 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~K   73 (80)
                      |...++..|+.|.|.|.+.   +.|.| -+.|.|
T Consensus       121 ~~~~~~~~g~~v~L~C~~~---~~p~p-~v~W~~  150 (241)
T 3grw_A          121 PANQTAVLGSDVEFHCKVY---SDAQP-HIQWLK  150 (241)
T ss_dssp             TCSEECCTTCCEEEEEEEE---CSSCC-EEEEEE
T ss_pred             CccceecCCCEEEEEEEEe---cCCCC-EEEEEE
Confidence            4556788999999999983   45666 799999

>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*

Probab=93.69  E-value=0.065  Score=36.34  Aligned_cols=36  Identities=17%  Similarity=0.316  Sum_probs=28.1

Q ss_pred             CCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           36 DISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        36 ~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      ..|.|..+++..|++|.|+|.+....   .+ -+.|.|+.
T Consensus         6 v~Q~p~~~~v~~G~svtL~C~~s~~~---~~-~v~Wyrq~   41 (210)
T 2eys_A            6 VEQSPQSLIILEGKNCTLQCNYTVSP---FS-NLRWYKQD   41 (210)
T ss_dssp             EEEECSEEEEETTCCEEEEEEECCSS---CC-EEEEEEEC
T ss_pred             EEEeCCEEEEecCCCEEEEEEECCCC---CC-eEEEEEeC
Confidence            35678899999999999999986442   13 48999874

>1zvy_A Immunoglobulin heavy chain antibody variable DOMA; beta sandwich, immunoglobulin fold, protein protein heteroco alpha-beta orthogonal bundle, hydrolase-immune system compl; 1.63A {Camelus dromedarius} SCOP: b.1.1.1

Probab=93.67  E-value=0.057  Score=34.38  Aligned_cols=33  Identities=12%  Similarity=0.203  Sum_probs=25.5

Q ss_pred             cceEEeecCCeEEEeeecCCC-CCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGVDFP-GDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP-~~~PiPYVvqW~KdG   75 (80)
                      |..+++..|++|.|+|.+... .+   .+-+.|.|+.
T Consensus         7 p~~~~v~~G~~vtL~C~~s~~~~~---~~~v~Wyrq~   40 (136)
T 1zvy_A            7 SGGGSVQAGGSLRLSCAASGSTDS---IEYMTWFRQA   40 (136)
T ss_dssp             ECCEECCTTCCEEEEEEEESCSTT---CCEEEEEEEC
T ss_pred             CCCEEEeCCCCEEEEEEecCCCCC---CcEEEEEEEC
Confidence            667899999999999998632 22   3568999874

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=93.63  E-value=0.027  Score=37.49  Aligned_cols=31  Identities=16%  Similarity=0.204  Sum_probs=25.9

Q ss_pred             EeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           44 TALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        44 tA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ++..|+.|.|.|.+   .+.|.|..+.|.|+|..
T Consensus       243 ~~~~g~~~~l~C~~---~g~p~p~~i~W~~~~~~  273 (331)
T 3u83_A          243 WYLQRMDVKLTCKA---DANPPATEYHWTTLNGS  273 (331)
T ss_dssp             CBTTCCCEEEEEEE---EEESCCCEEEEEETTBS
T ss_pred             eEeCCCeEEEEEeC---cCCCCCCEEEEEECCCc
Confidence            46789999999998   46788877999998864

>2d7t_H Anti polyhydroxybutyrate antibody FV, heavy chain; plastic, immune system; 1.70A {Homo sapiens}

Probab=93.59  E-value=0.033  Score=35.54  Aligned_cols=35  Identities=14%  Similarity=0.139  Sum_probs=25.4

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|..+++..|++|.|+|.+.....  -.+.+.|.|+.
T Consensus         6 qp~~~~v~~G~~vtL~C~~s~~~~--~~~~v~Wyrq~   40 (139)
T 2d7t_H            6 QSGAEVKKPGASVKVSCKASGYTF--TGNYMHWVRQA   40 (139)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCG--GGSCEEEEEEC
T ss_pred             CCCCEEEcCCCCEEEEEEEeCCcc--cCCEEEEEEEC
Confidence            356678999999999999863211  12458999874

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=93.57  E-value=0.04  Score=39.75  Aligned_cols=36  Identities=19%  Similarity=0.086  Sum_probs=29.4

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      +...++..|+.|.|.|.+   .+.|.|--++|.|+|.+.
T Consensus       320 ~~~~~v~~G~~v~l~C~~---~g~P~p~~v~W~k~g~~~  355 (524)
T 2ec8_A          320 NTTVFVNDGENVDLIVEY---EAFPKPEHQQWIYMNRTF  355 (524)
T ss_dssp             CSEEEECTTCCEEEEEEE---EEESCCCEEEEESSSCBC
T ss_pred             CceEEEcCCCcEEEEEEE---eecCCCcEEEEEECCeec
Confidence            346789999999999997   466777779999998753

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=93.56  E-value=0.027  Score=37.05  Aligned_cols=34  Identities=21%  Similarity=0.358  Sum_probs=24.4

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCC-CceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTP-VPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~P-iPYVvqW~KdG   75 (80)
                      .|..+++..|+.|.|.|.+.   +.+ .++.++|.|+.
T Consensus         8 ~~~~~~v~~G~~v~L~C~~~---~~~~~~~~v~W~r~~   42 (256)
T 3umt_A            8 QSGLELVKPGASVKISCKTS---GYTFTEYTMHWVKQS   42 (256)
T ss_dssp             ECCCEEECTTCCEEEEEEEE---SSCGGGSCEEEEEEC
T ss_pred             ccCceEEcCCCCEEEEEEEe---cccccccEEEEEEEC
Confidence            34456799999999999975   222 24568998853

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=93.51  E-value=0.074  Score=33.10  Aligned_cols=31  Identities=29%  Similarity=0.562  Sum_probs=24.9

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeee
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEK   73 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~K   73 (80)
                      .|...++..|+.|.|.|.+.   +.|.| .+.|.|
T Consensus       124 ~~~~~~~~~g~~~~l~C~~~---~~p~p-~v~W~~  154 (231)
T 3ojm_B          124 LPANASTVVGGDVEFVCKVY---SDAQP-HIQWIK  154 (231)
T ss_dssp             CSCCEEEETTCCEEEECCEE---CSSCC-EEEEEE
T ss_pred             cCCceEEEeCCcEEEEEEEe---cCCCC-EEEEEE
Confidence            35667789999999999874   45666 799999

>3iu4_H CHP3 FAB heavy chain; antibody, ganglioside, idiotype, immune system; 1.75A {Mus musculus} PDB: 1ibg_H* 3iy6_B

Probab=93.50  E-value=0.033  Score=38.13  Aligned_cols=34  Identities=15%  Similarity=0.191  Sum_probs=24.7

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |..+++..|+.|.|.|.+.-..  .-.+.+.|.|+.
T Consensus         7 ~~~v~v~~G~~v~L~C~~~~~~--~~~~~v~W~r~~   40 (263)
T 3iu4_H            7 SGPGLVAPSQSLSITCTVSGFS--LSRYSVHWVRQP   40 (263)
T ss_dssp             ECCSEECTTSCEEEEEEEESSC--GGGSCEEEEEEC
T ss_pred             CCCEEEcCCCCEEEEEEecccc--CCceEEEEEEEC
Confidence            4457899999999999996321  113568998863

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=93.48  E-value=0.051  Score=37.61  Aligned_cols=33  Identities=12%  Similarity=0.014  Sum_probs=24.7

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|. .++..|+.|.|.|..+.+     +-.+.|.|+|..
T Consensus        13 ~P~-~~V~~G~~VtL~C~~~~~-----~~~~~W~k~g~~   45 (257)
T 1b6u_A           13 HPG-PLVKSEETVILQCWSDVR-----FQHFLLHREGKF   45 (257)
T ss_dssp             BSC-SEEESSCCEEEEEEESSC-----CSEEEEEEESTT
T ss_pred             cCC-CEecCCCCEEEEEecCCC-----CcEEEEEECCCC
Confidence            344 457899999999998743     224899999864

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=93.48  E-value=0.042  Score=37.08  Aligned_cols=37  Identities=14%  Similarity=0.052  Sum_probs=27.0

Q ss_pred             cceEEeecCCeEEEeeecCC-CC------CCCCceEEEeeeccc
Q psy531           40 AVHITALLGESVVFNCGVDF-PG------DTPVPYVLQWEKKIV   76 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdf-P~------~~PiPYVvqW~KdG~   76 (80)
                      +..+++..|+.|.|.|.+.- |.      ...++.-+.|.|+|.
T Consensus        14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~   57 (349)
T 4dep_C           14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQ   57 (349)
T ss_dssp             CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEES
T ss_pred             eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCC
Confidence            45678999999999999874 21      012345699999984

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=93.46  E-value=0.053  Score=35.19  Aligned_cols=33  Identities=15%  Similarity=0.330  Sum_probs=24.5

Q ss_pred             eEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           42 HITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        42 ~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..++..|+.|.|.|.+.   +.+++..+.|.|+|..
T Consensus       195 ~~~~~~g~~~~l~C~~~---~~~p~~~i~W~~~~~~  227 (289)
T 3ejj_X          195 KLVRIRGEAAQIVCSAT---NAEVGFNVILKRGDTK  227 (289)
T ss_dssp             SEECCSSSCEEEEEEEE---ESSSCCEEEEEETTEE
T ss_pred             ceEEEeCCcEEEEEEeC---CCCCceEEEEEECCEE
Confidence            34457899999999996   2233456899999864

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=93.43  E-value=0.074  Score=33.31  Aligned_cols=29  Identities=17%  Similarity=0.368  Sum_probs=22.5

Q ss_pred             cCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           47 LGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        47 vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|+.|.|.|.+.  ...|+|.-+.|.|+|.+
T Consensus       128 ~g~~v~l~C~~~--g~~p~~~~v~W~k~g~~  156 (213)
T 3mj8_L          128 KTNQATLVCMIN--GFYPADVAVTWEADGTP  156 (213)
T ss_dssp             TTTEEEEEEEEE--EEBSSCCEEEEEETTEE
T ss_pred             cCCcEEEEEEee--ceeCCCeEEEEEcCCcc
Confidence            599999999987  22244567999999875

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=93.38  E-value=0.085  Score=34.70  Aligned_cols=31  Identities=16%  Similarity=0.231  Sum_probs=24.7

Q ss_pred             EEeecCCeEEEeeecCCCCCC-CCceEEEeeecccc
Q psy531           43 ITALLGESVVFNCGVDFPGDT-PVPYVLQWEKKIVK   77 (80)
Q Consensus        43 ltA~vGe~VVlnCdvdfP~~~-PiPYVvqW~KdG~~   77 (80)
                      .++..|+.|.|.|.+.   +. |.| -++|.|+|.+
T Consensus       126 ~~v~~g~~v~l~C~v~---g~~P~p-~i~W~k~g~~  157 (207)
T 3rbs_A          126 WEVTGECNVLLKCKVA---NIKKET-HIVWYKDERE  157 (207)
T ss_dssp             EEEETTTEEEEEEEEE---SCCTTC-EEEEEETTEE
T ss_pred             cEEcCCCcEEEEEEEe---CCCCCC-EEEEEECCEE
Confidence            6788999999999974   44 444 5799999875

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=93.35  E-value=0.057  Score=32.68  Aligned_cols=32  Identities=9%  Similarity=0.060  Sum_probs=23.9

Q ss_pred             EEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        43 ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .+...|+.|.|.|.++.   .+++--+.|.|+|..
T Consensus        95 ~~~~~g~~~~l~C~~~~---~~p~~~~~W~~~g~~  126 (170)
T 3ry4_A           95 LEFQEGETIMLRCHSWK---DKPLVKVTFFQNGKS  126 (170)
T ss_dssp             SEECTTCCEEEEEEEGG---GCCEEEEEEEETTEE
T ss_pred             ceeecCCeEEEEEECCC---CCCCceEEEEECCeE
Confidence            35678999999999842   223466999999864

>3k81_A Single strand antibody VHH domain; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Lama glama}

Probab=93.33  E-value=0.058  Score=34.58  Aligned_cols=35  Identities=17%  Similarity=0.131  Sum_probs=26.1

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      +|..+++..|+.|.|+|.+....  .-.+-+.|.|+.
T Consensus         6 q~~~v~v~~G~~VtL~C~~s~~~--~~~~~v~WyrQ~   40 (127)
T 3k81_A            6 ESGGGLAQAGGSLRLSCVVSGIT--FASEAWGWYRRA   40 (127)
T ss_dssp             EECCCBCCBTCEEEEEEBCSCCC--CSSSCEEEEEEC
T ss_pred             ecCCEEEccCCCEEEEEEecCCC--ccCcEEEEEEEC
Confidence            35568899999999999986542  114568999874

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=93.32  E-value=0.061  Score=36.08  Aligned_cols=34  Identities=18%  Similarity=0.362  Sum_probs=25.3

Q ss_pred             CcceEEeecCCeEEEeeecC-CCCCCCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVD-FPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvd-fP~~~PiPYVvqW~KdG   75 (80)
                      .|..+++..|+.|.|.|.+. +|.   ....++|.|++
T Consensus       140 ~p~~~~v~~G~~v~L~C~~~g~~~---~~~~v~W~k~~  174 (276)
T 3auv_A          140 ESGGGLVQPGGSLRLSCAASGFTI---SDYWIHWVRQA  174 (276)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCG---GGSEEEEEEEC
T ss_pred             CCCceEecCCCeEEEEEEecCccC---CCCEEEEEEcC
Confidence            35567899999999999986 221   13569999974

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=93.30  E-value=0.1  Score=32.78  Aligned_cols=30  Identities=13%  Similarity=0.049  Sum_probs=21.7

Q ss_pred             EEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        43 ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .++..|+.|.|.|.+.-.   + | .+.|.|+|..
T Consensus       110 ~~v~~G~~v~L~C~~~~~---~-~-~v~W~k~g~~  139 (198)
T 1ugn_A          110 PVVNSGGNVTLQCDSQVA---F-D-GFILCKEGED  139 (198)
T ss_dssp             SEEETTCCEEEEEECSSC---C-S-EEEEEEC---
T ss_pred             cccCCCCcEEEEEecCCC---C-c-EEEEEECCCc
Confidence            457899999999998644   2 2 6899999875

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=93.29  E-value=0.14  Score=31.29  Aligned_cols=32  Identities=19%  Similarity=0.266  Sum_probs=25.1

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeee
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEK   73 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~K   73 (80)
                      .|...++..|+.|.|.|.++   +.|.+--++|.|
T Consensus        89 ~~~~~~~~~g~~~~l~C~~~---g~p~~~~i~W~~  120 (184)
T 3b5h_A           89 VKSSEHINEGETAMLVCKSE---SVPPVTDWAWYK  120 (184)
T ss_dssp             SCSEEEECTTSCEEEEEECC---CSSCCCEEEEEE
T ss_pred             cCCCcEEcCCCcEEEEEEEC---CCCCCCeEEEEE
Confidence            44556789999999999875   666445689999

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=93.29  E-value=0.037  Score=35.16  Aligned_cols=31  Identities=23%  Similarity=0.362  Sum_probs=24.0

Q ss_pred             eecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           45 ALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        45 A~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +..|+.|.|.|.+.-  ..|.|--+.|.|+|..
T Consensus       136 ~~~g~~v~L~C~~~g--~~P~p~~v~W~~~g~~  166 (219)
T 1c1e_H          136 AQTNSMVTLGCLVKG--YFPEPVTVTWNSGSLS  166 (219)
T ss_dssp             SCCSSEEEEEEEEEE--EBSSCCEEEEGGGTBC
T ss_pred             cccCCeEEEEEEccc--ccCCCeEEEEEeCCcc
Confidence            468999999999861  1455656999999864

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=93.25  E-value=0.053  Score=36.62  Aligned_cols=31  Identities=19%  Similarity=0.442  Sum_probs=24.6

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeee
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEK   73 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~K   73 (80)
                      +.|..+++..|+.|.|.|.+.-   .| | .+.|.|
T Consensus       167 ~~p~~~~v~~G~~v~L~C~~~~---~~-~-~v~W~k  197 (282)
T 1qok_A          167 QSPAIMSASPGEKVTITCSASS---SV-S-YMHWFQ  197 (282)
T ss_dssp             EECSEEEECTTCCEEEEEEESS---CC-S-CCEEEE
T ss_pred             cCCCEEEEcCCCcEEEEEEecC---CC-c-eEEEEE
Confidence            3566788999999999999853   33 4 589999

>3v0a_C Llama antibody F12; botulinum neurotoxin, toxin, neurotoxin associated protein, progenitor toxin complex, VHH bound interlocked complex; HET: MES; 2.70A {Lama glama}

Probab=93.21  E-value=0.033  Score=36.16  Aligned_cols=43  Identities=9%  Similarity=0.137  Sum_probs=26.3

Q ss_pred             ccCCCCC---CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           30 FKGVSPD---ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        30 ~sg~~g~---~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .+|+.++   .|.| .+++..|++|.|+|.+.....  -.+.+.|.|+.
T Consensus         4 ~~g~~~~~~v~Q~~-~~~v~~G~~vtL~C~~s~~~~--~~~~v~Wyrq~   49 (152)
T 3v0a_C            4 ISDPNSQVQLVESG-GGLVQPGGSLRLSCAASGFTL--GSRYMSWVRQA   49 (152)
T ss_dssp             -----CCCEEEEEC-CCBCSSCSEEEEEEEEESSCG--GGSCEEEEEEC
T ss_pred             ccccccceEEEEcC-CEEEccCCCEEEEEEecCCCc--cCCeEEEEEEC
Confidence            3455443   3344 467999999999999864311  14668999873

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=93.17  E-value=0.12  Score=33.71  Aligned_cols=27  Identities=19%  Similarity=0.538  Sum_probs=20.7

Q ss_pred             eecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           45 ALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        45 A~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ...|+.|.|.|.     +.|.|- ++|.|+|..
T Consensus       125 ~~~G~~v~L~C~-----g~p~p~-i~W~k~~~~  151 (204)
T 1sy6_A          125 SISGTTVILTCP-----QYPGSE-ILWQHNDKN  151 (204)
T ss_dssp             EEETTEEEEECS-----CCCSSC-EEEEETTEE
T ss_pred             eecCCcEEEEcC-----CCCCCc-eEEEECCEE
Confidence            348999999998     344453 799999864

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=93.16  E-value=0.067  Score=39.13  Aligned_cols=36  Identities=17%  Similarity=0.281  Sum_probs=27.6

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|...++..|+.|.|.|.+.   +.+++..+.|.|+|..
T Consensus       233 ~~~~~~v~~G~~v~L~C~~~---g~~p~p~i~W~k~g~~  268 (423)
T 3qs7_E          233 TLPQLFLKVGEPLWIRCKAV---HVNHGFGLTWELENKA  268 (423)
T ss_dssp             STTEEEEETTSCEEEEEEEE---ESSSCCCEEEEESSSB
T ss_pred             CCCceEEeCCCeEEEEEEEE---cCCCCcEEEEEECCEE
Confidence            44567799999999999996   3334445899999874

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=93.16  E-value=0.055  Score=36.94  Aligned_cols=39  Identities=15%  Similarity=0.249  Sum_probs=28.8

Q ss_pred             CCcceEEeecCCeEEEeeecCCC--CCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFP--GDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP--~~~PiPYVvqW~KdG~~   77 (80)
                      -.|+..+.++|+.|.|.|.+...  ...|.|. +.|.|+|..
T Consensus         5 i~p~~~~v~~G~~v~l~C~~~~~~~~~~~~~~-i~W~~~g~~   45 (313)
T 2d9q_B            5 ISVSAPIVHLGDPITASCIIKQNCSHLDPEPQ-ILWRLGAEL   45 (313)
T ss_dssp             EEESCSEECTTCCEEEEECCCTTSCSSCSCSC-CEEESSSCB
T ss_pred             EECCCcEEcCCCCEEEEEEECCCCCCCCcccc-eEEEeCCEE
Confidence            35677778999999999999862  1123444 689999865

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=93.13  E-value=0.11  Score=32.07  Aligned_cols=31  Identities=19%  Similarity=0.143  Sum_probs=24.1

Q ss_pred             EEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        43 ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .+...|+.|.|.|.+.-   .|.| -++|.|+|..
T Consensus       107 ~~v~~g~~~~l~C~~~~---~p~~-~v~W~~~~~~  137 (184)
T 2ny1_B          107 THLLQGQSLTLTLESPP---GSSP-SVQCRSPRGK  137 (184)
T ss_dssp             SEEETTCCEEEEEECCT---TCCC-EEEEECTTSC
T ss_pred             ceeecCCCEEEEEEcCC---CCCC-EEEEEeCCCc
Confidence            46789999999999854   3444 6899998754

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=93.08  E-value=0.056  Score=34.07  Aligned_cols=28  Identities=14%  Similarity=0.312  Sum_probs=21.9

Q ss_pred             cCCeEEEeeecC-CCCCCCCceEEEeeecccc
Q psy531           47 LGESVVFNCGVD-FPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        47 vGe~VVlnCdvd-fP~~~PiPYVvqW~KdG~~   77 (80)
                      .|+.|.|.|.+. ++   |.|.-+.|.|+|.+
T Consensus       125 ~g~~v~l~C~~~g~~---p~~~~v~W~k~g~~  153 (210)
T 1lk3_L          125 ATGGASVVCLMNNFY---PRDISVKWKIDGTE  153 (210)
T ss_dssp             TTTEEEEEEEEEEEB---SSCCEEEEEETTEE
T ss_pred             cCCcEEEEEEEEeEe---CCceEEEEEeCCcc
Confidence            599999999986 22   33557999999875

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=93.00  E-value=0.11  Score=37.98  Aligned_cols=36  Identities=17%  Similarity=0.096  Sum_probs=26.5

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      -+|.-+++++|+.|.|.|.+.=   .|.| .++|.|++..
T Consensus        53 ~~~~~v~V~~G~~v~L~C~v~g---~P~p-~i~W~~~~~~   88 (423)
T 3qs7_E           53 YEAAAVEVDVSASITLQVLVDA---PGNI-SCLWVFKHSS   88 (423)
T ss_dssp             ---CEEEECSSCCEEEEEECSC---CSSC-EEEEEETTEE
T ss_pred             eccccEEEecCCcEEEEEEEEc---CCCC-eEEEEECCCc
Confidence            4666889999999999999864   4444 4899998743

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=92.95  E-value=0.083  Score=32.60  Aligned_cols=32  Identities=13%  Similarity=0.060  Sum_probs=23.8

Q ss_pred             EEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        43 ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .+...|+.|.|.|.++.  + +++--++|.|+|..
T Consensus        95 ~~~~~g~~~~l~C~~~~--~-~p~~~~~W~~~g~~  126 (176)
T 1f2q_A           95 EVVMEGQPLFLRCHGWR--N-WDVYKVIYYKDGEA  126 (176)
T ss_dssp             SEEETTSCEEEEEEEGG--G-CCEEEEEEEETTEE
T ss_pred             ceeeCCCCEEEEEEecC--C-CCceEEEEEECCEE
Confidence            35779999999998851  1 22356899999864

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=92.93  E-value=0.041  Score=35.74  Aligned_cols=34  Identities=9%  Similarity=0.119  Sum_probs=23.6

Q ss_pred             cceEEeecCCeEEEeeecCCC-CCCCCceE-EEeeecc
Q psy531           40 AVHITALLGESVVFNCGVDFP-GDTPVPYV-LQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP-~~~PiPYV-vqW~KdG   75 (80)
                      |..+++..|+.|.|.|.+.-. .+.  +++ |.|.|+.
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~--~~i~v~W~r~~   42 (232)
T 3qhz_H            7 SGPALVKPTQTLTLTCSFSGFSLST--SGMSVSWIRQP   42 (232)
T ss_dssp             ECCSEECTTSCEEEEEEEESCGGGC--TTCEEEEEEEC
T ss_pred             CCCEEECCCCcEEEEEEEeCccccc--ceeEeEEEEEC
Confidence            455779999999999998632 121  232 4998863

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=92.91  E-value=0.049  Score=35.68  Aligned_cols=33  Identities=12%  Similarity=0.011  Sum_probs=24.5

Q ss_pred             EeecCCeEEEeeecCCCCCCCCc-eEEEeeeccccc
Q psy531           44 TALLGESVVFNCGVDFPGDTPVP-YVLQWEKKIVKN   78 (80)
Q Consensus        44 tA~vGe~VVlnCdvdfP~~~PiP-YVvqW~KdG~~~   78 (80)
                      ....|+.|.|.|.++-  ..|.| ..+.|.|+|.+.
T Consensus        14 ~v~~G~~v~l~C~~~g--~~p~p~~~v~W~k~~~~l   47 (265)
T 2oz4_A           14 VLEVDTQGTVVCSLDG--LFPVSEAQVHLALGDQRL   47 (265)
T ss_dssp             EEETTEEEEEEEEEES--CSCGGGCEEEEEETTEEC
T ss_pred             eEecCCCEEEEEEccC--CCCCcceEEEEEeCCEEC
Confidence            3689999999999872  13333 479999998753

>3k74_B Nanobody; immunoglobulin, antibiotic resista methotrexate resistance, NADP, one-carbon metabolism, oxidoreductase, trimethoprim resistance; 1.95A {Lama glama}

Probab=92.91  E-value=0.043  Score=33.27  Aligned_cols=35  Identities=14%  Similarity=0.166  Sum_probs=25.7

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      +|.-+++..|+.|.|+|.+....  .-.+-+.|.|+.
T Consensus         4 ~~~~~~v~~G~~vtL~C~~s~~~--~~~~~v~Wyrq~   38 (115)
T 3k74_B            4 ESGGGLVQPGGSLRLSCAASGFT--FNNYWMYWVRRA   38 (115)
T ss_dssp             EECCCEECTTCCEEEEEEECSSC--GGGSCEEEEEEC
T ss_pred             cCCCeEECCCCcEEEEEEEeCcc--ccCCEEEEEEEC
Confidence            45667799999999999986421  114669999873

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=92.91  E-value=0.075  Score=34.48  Aligned_cols=34  Identities=18%  Similarity=0.271  Sum_probs=25.9

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|..+++..|+.|.|.|.+.   +.|.|.-+.|.|++
T Consensus        95 ~~~~~~v~~g~~v~L~C~~~---~~~~~~~v~W~~~~  128 (289)
T 3ejj_X           95 LAQEVTVVEGQEAVLPCLIT---DPALKDSVSLMREG  128 (289)
T ss_dssp             SCSEEEEETTSCEEECEEES---CGGGGGSEEEEEGG
T ss_pred             ccceEEEecCCceEeEEEcc---CCCcceEEEEEecC
Confidence            45667899999999999987   44555559998643

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=92.84  E-value=0.1  Score=38.19  Aligned_cols=35  Identities=31%  Similarity=0.492  Sum_probs=27.0

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      -.+.+++.+|++|.|.|.+...  .|. +.++|.|++.
T Consensus       372 l~~~~~~~~G~~v~L~C~~~~~--~~~-~~v~W~k~~~  406 (581)
T 3o3u_N          372 SAQNITARIGEPLVLKCKGAPK--KPP-QRLEWKLNTG  406 (581)
T ss_dssp             CCEEEEEETTSCEEECCTTCCS--SSS-CEEEEEEEET
T ss_pred             HhcccceecCCcEEEeeeecCC--CCC-ceEEEEEcCC
Confidence            4456889999999999998443  333 4699999986

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=92.83  E-value=0.036  Score=38.41  Aligned_cols=34  Identities=15%  Similarity=0.369  Sum_probs=25.6

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      |..+++..|+.|.|.|.+.   +.|.|. +.|.|++..
T Consensus       165 ~~~~~v~~G~~v~L~C~~~---g~p~p~-i~W~~~~~~  198 (347)
T 2ifg_A          165 VPNASVDVGDDVLLRCQVE---GRGLEQ-AGWILTELE  198 (347)
T ss_dssp             CCSSCCBTTCCEEEEEEEE---CSSCCC-CCEEESCCC
T ss_pred             CCceEEeCCCcEEEEEEEe---cCCCCE-EEEEcCCce
Confidence            3445789999999999983   444444 699999854

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=92.81  E-value=0.11  Score=33.55  Aligned_cols=33  Identities=18%  Similarity=0.152  Sum_probs=24.9

Q ss_pred             CcceEEeecCCeEEEeeecCC-CCCCCCceEEEeeec
Q psy531           39 NAVHITALLGESVVFNCGVDF-PGDTPVPYVLQWEKK   74 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdf-P~~~PiPYVvqW~Kd   74 (80)
                      .|..+++..|+.|.|.|.+.- |.   .+..+.|.|+
T Consensus       137 ~~~~~~v~~G~~v~L~C~~~~~~~---~~~~v~W~k~  170 (250)
T 3esu_F          137 QSGPELVKPGASVKISCKDSGYAF---SSSWMNWVKQ  170 (250)
T ss_dssp             ECCCEEECTTCCEEEEEECCSTTG---GGSEEEEEEE
T ss_pred             cCCceEEcCCceEEEEEEecCCcc---cCCEEEEEEE
Confidence            455677999999999999863 21   1356899998

>3nn8_A Engineered SCFV, heavy chain; beta barrel, antibody fragment, immunoglobulin, immune syste; 3.10A {Mus musculus}

Probab=92.79  E-value=0.096  Score=32.22  Aligned_cols=35  Identities=17%  Similarity=0.179  Sum_probs=24.9

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEE--Eeeecc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVL--QWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVv--qW~KdG   75 (80)
                      .|..+++..|+.|.|+|.+.... .. .+.+  .|.|+.
T Consensus         6 q~~~~~v~~G~~vtL~C~~s~~~-~~-~~~~~~~Wyrq~   42 (122)
T 3nn8_A            6 QSGPEDVKPGASVKISCKASGYS-LS-TSGMGVNWVKQS   42 (122)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSC-TT-STTCEEEEEEEE
T ss_pred             cCCCeEEeCCCcEEEEEEEECCC-cc-CceEEeEEEEeC
Confidence            35568899999999999996431 11 1335  999864

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=92.77  E-value=0.049  Score=36.69  Aligned_cols=32  Identities=22%  Similarity=0.292  Sum_probs=25.1

Q ss_pred             EEeecCCeEEEeeecCCCCCCCCc-eEEEeeecccc
Q psy531           43 ITALLGESVVFNCGVDFPGDTPVP-YVLQWEKKIVK   77 (80)
Q Consensus        43 ltA~vGe~VVlnCdvdfP~~~PiP-YVvqW~KdG~~   77 (80)
                      .++..|+.|.|.|.+.   +.|+| ..++|.|+|.+
T Consensus       127 ~~~~~g~~~~l~C~~~---g~p~~~~~v~W~k~g~~  159 (327)
T 2wng_A          127 ARATPQHTVSFTCESH---GFSPRDITLKWFKNGNE  159 (327)
T ss_dssp             SCBCTTCEEEEEEEEE---EEBSSCCEEEEEETTEE
T ss_pred             cccCCCCEEEEEEEEe---CccCCCcEEEEEECCEE
Confidence            3478899999999986   34443 58999999865

>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A 3tfk_C 1j8h_D* 1fyt_D* 4gkz_A* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A* 2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B 3e3q_D 4h1l_G

Probab=92.74  E-value=0.091  Score=37.41  Aligned_cols=35  Identities=17%  Similarity=0.314  Sum_probs=29.0

Q ss_pred             CCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           36 DISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        36 ~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      ..|.|..++++.|++|.|+|.+....    .+-+.|.|+
T Consensus        12 V~Qsp~~v~v~~G~sVtL~C~~s~~~----~~~v~WyrQ   46 (226)
T 3tjh_C           12 VTQPDARVTVSEGASLQLRCKYSYSA----TPYLFWYVQ   46 (226)
T ss_dssp             EECSCSEEEEETTSCEEECCEEEESS----CEEEEEEEE
T ss_pred             EEEeCCEEEEEcCCCEEEEEEEecCC----CCeEEEEEE
Confidence            45789999999999999999987641    356899997

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=92.72  E-value=0.081  Score=35.95  Aligned_cols=29  Identities=10%  Similarity=0.016  Sum_probs=22.7

Q ss_pred             EeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           44 TALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        44 tA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ++..|+.|.|.|..+-+     +-.+.|.|+|..
T Consensus        17 ~v~~G~~VtL~C~~~~~-----~~~~~w~k~g~~   45 (242)
T 1p6f_A           17 MVPKEKQVTICCQGNYG-----AVEYQLHFEGSL   45 (242)
T ss_dssp             EEETTCCEEEEEECCTT-----CCEEEEEETTEE
T ss_pred             ccCCCCcEEEEEeeCCC-----CcEEEEEECCCc
Confidence            58899999999998632     235789999864

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=92.71  E-value=0.086  Score=35.06  Aligned_cols=33  Identities=12%  Similarity=0.255  Sum_probs=24.3

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCC-ceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPV-PYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~Pi-PYVvqW~KdG   75 (80)
                      |...++..|+.|.|.|.+.   +.|+ .+.+.|.|++
T Consensus       158 ~~~~~v~~G~~v~L~C~~~---~~~~~~~~v~W~k~~  191 (268)
T 1x9q_A          158 TGGGLVQPGGAMKLSCVTS---GFTFGHYWMNWVRQS  191 (268)
T ss_dssp             ECCEEECTTCCEEEEEEEE---SSCGGGCEEEEEEEE
T ss_pred             CCceEecCCCcEEEEEEec---CccccccEEEEEEeC
Confidence            3456799999999999985   2232 3568999863

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=92.69  E-value=0.096  Score=34.02  Aligned_cols=32  Identities=3%  Similarity=-0.102  Sum_probs=24.0

Q ss_pred             EEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        43 ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .+...|+.|.|.|.++-   .+++--+.|.|+|..
T Consensus        98 ~~v~~G~~v~L~C~~~~---~~p~~~v~W~k~g~~  129 (204)
T 3sgj_C           98 WVFKEEDPIHLRCHSWK---NTALHKVTYLQNGKG  129 (204)
T ss_dssp             SEEETTCCEEEEEEEGG---GCCCEEEEEEETTEE
T ss_pred             eeEeCCCcEEEEEEecC---CCCCceEEEEECCcE
Confidence            45778999999999842   223356899999864

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=92.68  E-value=0.056  Score=37.52  Aligned_cols=30  Identities=23%  Similarity=0.473  Sum_probs=24.2

Q ss_pred             eecCCeEEEeeecCCCCCC-CCceEEEeeecccc
Q psy531           45 ALLGESVVFNCGVDFPGDT-PVPYVLQWEKKIVK   77 (80)
Q Consensus        45 A~vGe~VVlnCdvdfP~~~-PiPYVvqW~KdG~~   77 (80)
                      +..|+.|.|.|.+.   +. |.|.-+.|.|+|..
T Consensus       355 ~~~g~~v~L~C~~~---g~~P~~~~v~W~~~g~~  385 (438)
T 1qgc_4          355 AAAASMVTLGCLVK---GYFPEPVTVTWNSGSLS  385 (438)
T ss_dssp             GCCSSEEEEEEEEE---SCBSSCCEEEEGGGTCC
T ss_pred             cccCCcEEEEEEec---cccCCCcEEEEecCCCC
Confidence            45799999999986   33 55667999999875

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=92.65  E-value=0.1  Score=31.91  Aligned_cols=29  Identities=14%  Similarity=0.368  Sum_probs=22.2

Q ss_pred             EeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           44 TALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        44 tA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      ++..|+.|.|.|.+.  .+.|.| .+.|.|++
T Consensus       132 ~~~~g~~v~l~C~~~--~g~p~~-~v~W~~~~  160 (214)
T 3jz7_A          132 SEEIGNDFKLKCEPK--EGSLPL-QFEWQKLS  160 (214)
T ss_dssp             CCBTTCCEEEEEECS--BCCSSC-EEEEEECS
T ss_pred             ceecCCcEEEEecCC--CCCCCC-EEEEEECC
Confidence            478899999999985  345554 48999964

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=92.60  E-value=0.022  Score=42.50  Aligned_cols=36  Identities=28%  Similarity=0.496  Sum_probs=0.0

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..|...++..|+.|.|.|.++   +.|.| -+.|.|+|.+
T Consensus       671 ~~~~~~~v~~g~~~~l~C~~~---g~P~p-~v~W~k~g~~  706 (772)
T 3v2a_R          671 GNLENQTTSIGESIEVSCTAS---GNPPP-QIMWFKDNET  706 (772)
T ss_dssp             ----------------------------------------
T ss_pred             cCCCceEEeCCCCEEEEEEeC---ccCCC-eEEEEECCeE

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=92.52  E-value=0.06  Score=36.20  Aligned_cols=29  Identities=17%  Similarity=0.180  Sum_probs=23.0

Q ss_pred             EeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           44 TALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        44 tA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ++..|+.|.|.|.+..|.     -.+.|.|+|..
T Consensus       229 ~v~~G~~v~L~C~~~~~~-----~~~~W~k~g~~  257 (316)
T 3vh8_G          229 KVQAGESVTLSCSSRSSY-----DMYHLSREGGA  257 (316)
T ss_dssp             CCCTTSCCEEEEEESSCC-----SEEEEEETTSS
T ss_pred             eecCCCcEEEEEECCCCC-----cEEEEEECCCc
Confidence            356899999999998542     34899999865

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=92.49  E-value=0.12  Score=30.53  Aligned_cols=29  Identities=21%  Similarity=0.206  Sum_probs=24.0

Q ss_pred             eecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           45 ALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        45 A~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +..|+.+.|.|.+.   |.|.|- ++|.|+|.+
T Consensus        13 ~~~~~~~~~~c~v~---G~P~P~-i~W~k~g~~   41 (103)
T 1wwb_X           13 PTSDHHWCIPFTVK---GNPKPA-LQWFYNGAI   41 (103)
T ss_dssp             CCCCCEEEEEEEEE---CSSCCE-EEEEETTEE
T ss_pred             ceECcEEEEEEEEE---EeCCCE-EEEEECCEE
Confidence            56789999999875   777774 899999865

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=92.41  E-value=0.087  Score=35.82  Aligned_cols=35  Identities=20%  Similarity=0.528  Sum_probs=26.7

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .+...++..|+.|.|.|.+.   +.| +..++|.|+|.+
T Consensus       106 ~~~~~~~~~g~~~~l~C~~~---g~p-~~~i~W~~~g~~  140 (389)
T 2jll_A          106 NQTIYYSWEGNPINISCDVK---SNP-PASIHWRRDKLV  140 (389)
T ss_dssp             SCCEEEECTTCCEEEEECEE---EES-CCEEEEEETTEE
T ss_pred             CcceEEeccCCEEEEEEEEE---ecC-CCeEEEEECCcc
Confidence            34455789999999999875   444 356899999865

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=92.35  E-value=0.067  Score=33.53  Aligned_cols=30  Identities=13%  Similarity=0.294  Sum_probs=23.1

Q ss_pred             ecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           46 LLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        46 ~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..|+.|.|.|.+.  ...|.|--+.|.|+|.+
T Consensus       134 ~~~~~v~L~C~~~--g~~p~~~~v~W~k~g~~  163 (218)
T 3s96_B          134 LKENKATLVCLIS--NFSPSGVTVAWKANGTP  163 (218)
T ss_dssp             HHTTEEEEEEEEE--EEBSSCCEEEEEETTEE
T ss_pred             ccCCcEEEEEEEC--cccCCCeEEEEEECCEE
Confidence            4689999999997  22355657999999875

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=92.32  E-value=0.14  Score=30.65  Aligned_cols=29  Identities=17%  Similarity=0.118  Sum_probs=22.2

Q ss_pred             EeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           44 TALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        44 tA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +...|+.|.|.|..+-+     +....|.|+|..
T Consensus        15 ~v~~G~~VtL~C~~~~~-----~~~~~w~k~g~~   43 (105)
T 2vsd_A           15 GVSLGDTVTLRCHLPRM-----AAWVQLWLNGTL   43 (105)
T ss_dssp             SCCTTCEEEEEEECCSS-----CEEEEEEETTEE
T ss_pred             CcCcCCCEEEEEEcCCC-----CcEEEEEECCcc
Confidence            47899999999998643     234679999853

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=92.30  E-value=0.045  Score=36.38  Aligned_cols=33  Identities=18%  Similarity=0.231  Sum_probs=25.9

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|+..++..|+.+.|.|.+.   |.|.|. ++|.|++
T Consensus       112 ~~~~~~v~~g~~~~l~C~~~---G~P~P~-v~W~~~~  144 (203)
T 4fa8_A          112 HSERSQFPDFSVLTVTCTVN---AFPHPH-VQWLMPE  144 (203)
T ss_dssp             EEEECCSSCSCCEEEEEEEE---EESCCE-EEECCC-
T ss_pred             cceeEEEcCCCEEEEEEEcC---CCCCCE-EEEEECC
Confidence            45566788999999999985   778885 7998764

>3lh2_H FV 4E10 heavy chain; epitope-scaffold, immune system; 2.65A {Homo sapiens} PDB: 3h3p_H 3lhp_H 2xtj_D

Probab=92.30  E-value=0.1  Score=33.78  Aligned_cols=36  Identities=19%  Similarity=0.413  Sum_probs=26.8

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|.|..+ +..|+.|.|+|.+.-..  .-.+-+.|.|+.
T Consensus         7 ~Q~p~~~-v~~G~sVtL~C~~s~~~--~~~~~v~Wyrq~   42 (137)
T 3lh2_H            7 VQSGAEV-KRPGSSVTVSCKASGGS--FSTYALSWVRQA   42 (137)
T ss_dssp             EECCCEE-ECSSCCEEEEEEEESSC--STTSCEEEEEEC
T ss_pred             EECCCEE-EcCCCCEEEEEEecCCc--ccccEEEEEEEC
Confidence            4677777 99999999999986321  113668999873

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=92.29  E-value=0.09  Score=33.03  Aligned_cols=29  Identities=14%  Similarity=0.133  Sum_probs=22.4

Q ss_pred             EeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           44 TALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        44 tA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +...|+.|.|.|....+   | | -+.|.|+|..
T Consensus       104 ~v~~G~~v~l~C~~~~~---~-~-~~~w~k~g~~  132 (184)
T 2gi7_A          104 AVSSGGDVTLQCQTRYG---F-D-QFALYKEGDP  132 (184)
T ss_dssp             SSCCTTCEEEEEECSSC---C-C-EEEEEECCCC
T ss_pred             eecCCCcEEEEEEcCCC---C-c-EEEEEECCCc
Confidence            45789999999997543   2 3 6799999865

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=92.22  E-value=0.14  Score=31.72  Aligned_cols=28  Identities=18%  Similarity=0.127  Sum_probs=22.7

Q ss_pred             eecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           45 ALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        45 A~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +..|+.|.|.|.++-+   | | -+.|.|+|..
T Consensus       122 ~~~g~~v~l~C~~~~~---p-p-~i~W~~~g~~  149 (208)
T 3r4d_A          122 VKELDSVTLTCLSNDI---G-A-NIQWLFNSQS  149 (208)
T ss_dssp             CCTTCCEEEEEECSCT---T-C-EEEEEETTEE
T ss_pred             EeeCCCEEEEEECCCC---C-C-ceEEEECCEe
Confidence            6789999999998653   3 4 7999998864

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=92.14  E-value=0.079  Score=38.40  Aligned_cols=32  Identities=13%  Similarity=0.321  Sum_probs=25.8

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      +.|..+++..|+.|.|.|.+.     |.| .++|.|.+
T Consensus       357 ~~~~~~~v~~G~~~~l~C~~~-----p~p-~i~W~~~~  388 (452)
T 3zyi_A          357 DAPRDLNISEGRMAELKCRTP-----PMS-SVKWLLPN  388 (452)
T ss_dssp             BCCCCEECCTTSCCEECCBCC-----TTS-EEEEECTT
T ss_pred             cccccccccCCCEEEEEEeCC-----CCC-cEEEEeCC
Confidence            467778999999999999987     444 37999954

>3eak_A NBBCII10-FGLA; antibody, nanobody, humanization, VHH domain, immune system; 1.95A {Camelus dromedarius} SCOP: b.1.1.1

Probab=92.05  E-value=0.064  Score=34.58  Aligned_cols=37  Identities=14%  Similarity=0.232  Sum_probs=26.6

Q ss_pred             CcceEEeecCCeEEEeeecCCCCC-CCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGD-TPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~-~PiPYVvqW~KdG   75 (80)
                      +|..++++.|+.|.|+|.+..... .--.+-+.|.|+.
T Consensus         6 q~~~~~v~~G~~vtL~C~~s~~~~~~~~~~~v~WyrQ~   43 (137)
T 3eak_A            6 ESGGGLVQPGGSLRLSCAASGGSEYSYSTFSLGWFRQA   43 (137)
T ss_dssp             EECCCEECTTCCEEEEEEEESCTTSCGGGSEEEEEEEC
T ss_pred             ecCCEEECCCCCEEEEeEecCCccccccCcEEEEEEEC
Confidence            455678999999999999865410 1124679999874

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=92.05  E-value=0.1  Score=34.47  Aligned_cols=30  Identities=17%  Similarity=0.310  Sum_probs=21.5

Q ss_pred             EeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           44 TALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        44 tA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +...|+.|.|.|...   +.|.| .+.|.|+|..
T Consensus       116 ~v~~G~~v~L~C~~~---~~~~~-~~~W~k~g~~  145 (218)
T 1uct_A          116 VLMPGENISLTCSSA---HIPFD-RFSLAKEGEL  145 (218)
T ss_dssp             EECTTCCCEEEEECS---SSCCS-EEEEEETTCS
T ss_pred             ccCCCCCEEEEEeCC---CCCCC-EEEEEECCCc
Confidence            468999999999432   22233 5799999875

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=92.01  E-value=0.16  Score=33.57  Aligned_cols=34  Identities=15%  Similarity=0.323  Sum_probs=25.9

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .+.|..+++..|+.|.|.|.+.-   . .| .+.|.|+.
T Consensus       141 ~~~p~~~~v~~G~~v~L~C~~~~---~-~~-~v~W~k~~  174 (256)
T 3tf7_C          141 TQSPRNKVTVTGENVTLSCRQTN---S-HN-YMYWYRQD  174 (256)
T ss_dssp             EESCSEEEEETTCCEEECEEECS---C-CS-EEEEEEEC
T ss_pred             EecCCEEEEeCCCcEEEEEEcCC---C-ce-EEEEEEEC
Confidence            34677788999999999999863   2 23 58999853

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=91.97  E-value=0.065  Score=33.91  Aligned_cols=31  Identities=26%  Similarity=0.488  Sum_probs=23.8

Q ss_pred             eecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           45 ALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        45 A~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +..|+.|.|.|.+.  ...|.|--+.|.|+|..
T Consensus       130 ~~~g~~v~L~C~~~--g~~P~p~~v~W~~~~~~  160 (210)
T 3d9a_H          130 AQTNSMVTLGCLVK--GYFPEPVTVTWNSGSLS  160 (210)
T ss_dssp             CCCSSEEEEEEEEE--EEBSSCCEEEEGGGTBC
T ss_pred             cccCCcEEEEEEEe--eEecCCcEEEEeeCCcc
Confidence            46899999999986  12255667999999874

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=91.89  E-value=0.03  Score=36.90  Aligned_cols=31  Identities=13%  Similarity=0.005  Sum_probs=23.1

Q ss_pred             eecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           45 ALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        45 A~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ...|+.|.|.|.+.-  .-|.|--+.|.|+|.+
T Consensus       158 ~~~g~~v~L~C~~~g--~~p~~~~v~W~~~g~~  188 (268)
T 3pl6_D          158 ISHTQKATLVCLATG--FYPDHVELSWWVNGKE  188 (268)
T ss_dssp             HHHHSEEEEEEEEEE--EBSSCEEEEEEESSSE
T ss_pred             ccCCCceEEEEEECc--ccCCCeEEEEEECCEE
Confidence            345999999999861  2244567999999875

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=91.89  E-value=0.095  Score=32.41  Aligned_cols=35  Identities=11%  Similarity=0.201  Sum_probs=21.6

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ++..++. .|+.+.|.|.+.-   .+++-.++|.|+|.+
T Consensus         9 ~~v~l~c-~~~~~~l~C~~~~---~~p~~~i~W~~~g~~   43 (212)
T 2r15_A            9 TDLKIQS-TAEGIQLYSFVTY---YVEDLKVNWSHNGSA   43 (212)
T ss_dssp             CCCEEEE-CSSEEEEEEEBSS---CCSSCEEEEEETTEE
T ss_pred             CcEEEEE-cCceEEEEEEEec---cCCCceEEEEECCEE
Confidence            3444433 5666777776642   234456999999865

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=91.77  E-value=0.07  Score=34.02  Aligned_cols=31  Identities=26%  Similarity=0.488  Sum_probs=23.4

Q ss_pred             eecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           45 ALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        45 A~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ...|+.|.|.|.+.  ...|.|..+.|.|+|..
T Consensus       139 ~~~g~~v~L~C~~~--g~~P~p~~v~W~~~g~~  169 (222)
T 1q9r_B          139 AQTNSMVTLGCLVK--GYFPEPVTVTWNSGSLS  169 (222)
T ss_dssp             CCCSSEEEEEEEEE--EEBSSCCEEEEGGGTBC
T ss_pred             ccCCCcEEEEEEEc--cEECCCCEEEEecCCeE
Confidence            35799999999996  11245667999999864

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=91.76  E-value=0.13  Score=32.77  Aligned_cols=33  Identities=15%  Similarity=0.161  Sum_probs=24.5

Q ss_pred             eEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           42 HITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        42 ~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..+...|+.+.|.|.+.-  + .++.-+.|.|+|..
T Consensus        91 ~~~~~~g~~v~l~C~~~~--~-~p~~~v~W~~~g~~  123 (262)
T 3rjd_A           91 SRVFTEGEPLALRCHAWK--D-KLVYNVLYYRNGKA  123 (262)
T ss_dssp             CSEEETTSCEEEEEEEGG--G-CCCEEEEEEETTEE
T ss_pred             CeEEecCCeEEEEEEccC--C-CCCceEEEEECCcc
Confidence            345789999999999842  2 23566899999864

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=91.61  E-value=0.098  Score=33.34  Aligned_cols=29  Identities=10%  Similarity=0.135  Sum_probs=20.1

Q ss_pred             cCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           47 LGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        47 vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|+.|.|.|.+.-  ..|.|.-+.|.|+|.+
T Consensus       148 ~g~~v~L~C~~~g--~~p~~~~v~W~k~g~~  176 (233)
T 3bqu_C          148 TSGGASVVCFLNN--FYPKDINVKWKIDGSE  176 (233)
T ss_dssp             HTTEEEEEEEEEE--EBSSCEEEEEEEC---
T ss_pred             cCCceEEEEEEcc--ccCCceEEEEEECCee
Confidence            5999999999862  1244566999999864

>3jts_B Beta-2-microglobulin; alpha helix, beta sheet, beta barrel, immune response, MHC I membrane, transmembrane, disease mutation; 2.80A {Homo sapiens}

Probab=91.58  E-value=0.16  Score=32.66  Aligned_cols=28  Identities=29%  Similarity=0.344  Sum_probs=21.3

Q ss_pred             ecCCeEEEeeecC--CCCCCCCceEEEeeecccc
Q psy531           46 LLGESVVFNCGVD--FPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        46 ~vGe~VVlnCdvd--fP~~~PiPYVvqW~KdG~~   77 (80)
                      ..|+.+.|.|.+.  ||.+    --|.|.|+|.+
T Consensus        36 ~~g~~~~L~C~~~gFyP~~----I~v~W~knG~~   65 (119)
T 3jts_B           36 ENGKSNFLNCYVSGFHPSD----IEVDLLKNGER   65 (119)
T ss_dssp             CTTSCEEEEEEEEEEBSSC----CEEEEEETTEE
T ss_pred             cCCCcEEEEEEEeCccCCC----EEEEEEECCEE
Confidence            3467899999886  5643    35999999875

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=91.46  E-value=0.2  Score=38.14  Aligned_cols=34  Identities=18%  Similarity=0.374  Sum_probs=26.9

Q ss_pred             ceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           41 VHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        41 ~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ...++..|+.|.|.|.++   +.|.|.-++|.|+|.+
T Consensus       627 ~~~~~~~G~~v~L~C~~~---~~~~~~~i~W~~~g~~  660 (816)
T 3dmk_A          627 EEGPAQVGQYLTLHCSVP---GGDLPLNIDWTLDGQA  660 (816)
T ss_dssp             CSSCEESSCEEEEEEBCC---CSSSCCEEEEEETTBC
T ss_pred             cccccCCCCeEEEEEEEe---CCCCCCEEEEEECCeE
Confidence            344588999999999986   3456678999999865

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=91.45  E-value=0.097  Score=32.88  Aligned_cols=29  Identities=10%  Similarity=0.147  Sum_probs=21.8

Q ss_pred             cCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           47 LGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        47 vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|+.|.|.|.+.-  ..|.|--+.|.|+|.+
T Consensus       129 ~g~~v~L~C~~~g--~~p~~~~v~W~k~g~~  157 (212)
T 1q0x_L          129 STAKATLVCTITD--FYPGVVTVDWKVDGTP  157 (212)
T ss_dssp             TTTEEEEEEEEEE--EBSSCCEEEEEETTEE
T ss_pred             cCCcEEEEEEEEE--EeCCCeEEEEEECCEe
Confidence            5999999999862  1134557999999864

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=91.44  E-value=0.19  Score=34.07  Aligned_cols=29  Identities=24%  Similarity=0.357  Sum_probs=22.7

Q ss_pred             EeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           44 TALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        44 tA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +...|+.|.|.|....+.    | .+.|.|+|..
T Consensus       112 ~v~~G~~vtL~C~~~~~~----~-~~~w~k~g~~  140 (242)
T 1p6f_A          112 EVISGEKVTFYCRLDTAT----S-MFLLLKEGRS  140 (242)
T ss_dssp             EEETTCEEEEEEECTTSC----S-EEEEEECSSS
T ss_pred             ccCCCCcEEEEEecCCCC----C-EEEEEECCCc
Confidence            357899999999987542    2 6899999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	80
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.95
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	97.89
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	97.8
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	97.79
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	97.76
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	97.74
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	97.74
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	97.72
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.71
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	97.64
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	97.63
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	97.58
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	97.54
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	97.49
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	97.49
d1gxea_	130	Cardiac myosin binding protein C, different domain	97.48
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.44
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	97.41
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	97.39
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.36
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	97.33
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	97.31
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.25
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.23
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	97.22
d2avga1	110	Cardiac myosin binding protein C, different domain	97.21
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	97.2
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	97.19
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	97.18
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	97.18
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	97.18
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	97.1
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	97.09
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	97.04
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	96.99
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	96.98
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	96.98
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	96.95
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	96.93
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	96.91
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	96.89
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	96.89
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	96.88
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	96.82
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	96.8
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	96.75
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	96.74
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	96.73
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	96.7
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.61
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	96.61
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	96.57
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	96.48
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	96.45
d1pd6a_	94	Cardiac myosin binding protein C, different domain	96.41
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	96.29
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	96.19
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.18
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	96.17
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	96.14
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	96.11
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	96.03
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	95.99
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	95.99
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	95.98
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	95.94
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	95.93
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	95.89
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	95.88
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	95.8
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	95.72
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	95.71
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	95.69
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	95.68
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	95.67
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	95.66
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	95.65
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	95.58
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	95.56
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	95.54
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	95.51
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	95.4
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	95.37
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	95.37
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	95.36
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	95.34
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	95.3
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	95.28
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	95.26
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	95.25
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	95.22
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	95.2
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	95.08
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	94.98
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	94.95
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	94.94
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	94.94
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	94.93
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	94.92
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	94.92
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	94.82
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	94.74
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	94.64
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	94.58
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	94.52
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	94.52
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	94.46
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	94.38
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	94.36
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	94.15
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	94.09
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	93.96
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	93.87
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	93.75
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	93.67
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	93.67
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	93.65
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	93.6
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	93.49
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	93.29
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	93.28
d8faba1	103	Immunoglobulin light chain lambda variable domain,	93.04
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	93.04
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	92.8
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	92.6
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	92.43
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	92.12
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	91.67
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	91.51
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	91.29
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	90.73
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	90.45
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	89.36
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	88.96
d2a7ya1	80	Hypothetical protein Rv2302/MT2359 {Mycobacterium	88.1
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	87.99
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	87.91
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	87.81
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	87.17
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	86.97
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	85.48
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	85.42
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	84.69
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	84.6
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	84.12
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	82.3
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	80.2

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.5e-06  Score=51.68  Aligned_cols=36  Identities=19%  Similarity=0.438  Sum_probs=31.3

Q ss_pred             ceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           41 VHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        41 ~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      .++||.+||+|+|+|.++.+...-.+|.+.|.|++.
T Consensus         2 ~~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~   37 (105)
T d1dr9a1           2 IHVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKK   37 (105)
T ss_dssp             CEEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTE
T ss_pred             eEEEEEeCCCEEEEEEECCcccceeEEEEEEEecce
Confidence            368999999999999999887666789999999864

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=97.89  E-value=4.7e-06  Score=48.42  Aligned_cols=35  Identities=29%  Similarity=0.544  Sum_probs=29.0

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      -|...++++|+.|.|.|.+.   +.|.|. ++|.|++..
T Consensus        11 ~P~~~tv~~G~~v~l~C~v~---g~P~p~-v~W~k~~~~   45 (109)
T d2fdbp2          11 LPANASTVVGGDVEFVCKVY---SDAQPH-IQWIKHVEK   45 (109)
T ss_dssp             CSCCEEECTTCCEEEEEEEE---CSSCCE-EEEEEEC--
T ss_pred             CCCCEEEecCCcEEEEEEEE---EcCCCe-EEEEecCcc
Confidence            47889999999999999997   778885 799998754

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=8.7e-06  Score=46.66  Aligned_cols=36  Identities=31%  Similarity=0.509  Sum_probs=30.0

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      .|..+++..||.|.|.|.+.   +.|.| .+.|.|+|.+.
T Consensus         2 ~P~~~~v~~G~~~~l~C~v~---g~p~p-~v~W~k~g~~l   37 (91)
T d1rhfa1           2 APVKLTVSQGQPVKLNCSVE---GMEEP-DIQWVKDGAVV   37 (91)
T ss_dssp             CCEEEEEETTCCEEEEEEEE---SCSSC-CEEEEETTEEC
T ss_pred             cCeeEEEcCCCeEEEEEEEE---ecCCc-eEEEEEeeccc
Confidence            48899999999999999996   55555 58999998763

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=8.6e-06  Score=47.76  Aligned_cols=38  Identities=13%  Similarity=0.291  Sum_probs=33.1

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      ++|+.+++..|++++|.|.+.   |.|.|.-++|.|+|.+-
T Consensus         6 ~~P~~~~v~~G~~~~l~C~~~---g~P~P~~i~W~k~g~~i   43 (85)
T d1rhfa2           6 VEPKDLAVPPNAPFQLSCEAV---GPPEPVTIVWWRGTTKI   43 (85)
T ss_dssp             ECCCCEEECTTCCEEEEEEEE---CSSSCCEEEEEETTEEC
T ss_pred             EeCCcEEEcCCCEEEEEEEEe---cCCcceEEEEEECCEEC
Confidence            468888999999999999985   78889889999998753

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=2e-05  Score=45.96  Aligned_cols=38  Identities=16%  Similarity=0.316  Sum_probs=31.1

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +..++|..||.|.|.|.+..+....-++.+.|.|++..
T Consensus        11 ~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~   48 (124)
T d1eaja_          11 EEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPAD   48 (124)
T ss_dssp             EEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETT
T ss_pred             CceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCC
Confidence            35688999999999999998866566789999987543

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=2.3e-05  Score=46.81  Aligned_cols=44  Identities=16%  Similarity=0.210  Sum_probs=35.5

Q ss_pred             CCCCCCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           32 GVSPDISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        32 g~~g~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      +.......++.+++..|+.|.|.|.+.   +.|.|.-++|.|+|.+.
T Consensus         5 ~~P~~~~~~~~v~~~~G~~v~L~C~~~---g~~~~~~i~W~k~~~~l   48 (93)
T d1n26a1           5 RCPAQEVARGVLTSLPGDSVTLTCPGV---EPEDNATVHWVLRKPAA   48 (93)
T ss_dssp             CCCCCCCCTTEEEECTTCCEEEECTTS---CTTCCSEEEEEEECSSS
T ss_pred             CCCcEEeCCCCEEEeCCCcEEEEEEee---cCCCCceEEEEEccccc
Confidence            445556678889999999999999975   66677789999998753

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=97.74  E-value=6.3e-06  Score=47.73  Aligned_cols=37  Identities=32%  Similarity=0.564  Sum_probs=31.3

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      .+|..++++.|+.|.|.|.+.   |.|.|- ++|.|+|.+.
T Consensus         4 ~~P~~~~v~~G~~~~l~C~~~---g~P~p~-v~W~~~g~~l   40 (91)
T d1tnna_           4 TKPRSMTVYEGESARFSCDTD---GEPVPT-VTWLRKGQVL   40 (91)
T ss_dssp             BCCCCEECSSSSCCCEEEECC---CSSCCC-CEEESSSSTT
T ss_pred             eCCcCEEEeCCCcEEEEEEEE---EEeCCe-EEEEEeeccc
Confidence            468889999999999999986   677775 7999998753

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.72  E-value=2.1e-05  Score=46.30  Aligned_cols=38  Identities=11%  Similarity=0.173  Sum_probs=30.8

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      .|..++|.+|++|.|.|.+..+....-++.+.|.|...
T Consensus         5 ~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~   42 (119)
T d1neua_           5 TDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPE   42 (119)
T ss_dssp             CCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEET
T ss_pred             CCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecc
Confidence            47778999999999999999885544466799998654

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.71  E-value=1.9e-05  Score=45.39  Aligned_cols=39  Identities=10%  Similarity=0.181  Sum_probs=32.9

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      ..+|..+++..|+.|.|.|.++   +.|.|-.+.|.|+|..-
T Consensus         6 ~~~p~~~~v~~g~~~~l~C~~~---g~p~p~~v~W~~~g~~l   44 (94)
T d1biha1           6 KDQPAEVLFRENNPTVLECIIE---GNDQGVKYSWKKDGKSY   44 (94)
T ss_dssp             CCCCSEEEEETTSCEEECCCEE---SCCSSCEEEEEESSSBC
T ss_pred             EecCCcEEEeCCCeEEEEEEec---CCCCeeEEEEEeeeeee
Confidence            3568889999999999999885   66778789999998753

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.64  E-value=1.2e-05  Score=46.98  Aligned_cols=37  Identities=35%  Similarity=0.565  Sum_probs=30.5

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ++++...+|.+|+.|.|.|.++   |.|.| .++|.|+|.+
T Consensus         9 ~~~~~~~t~~~G~~v~l~C~~~---g~P~p-~i~W~~~g~~   45 (100)
T d1qz1a3           9 RQSIVNATANLGQSVTLVCDAD---GFPEP-TMSWTKDGEP   45 (100)
T ss_dssp             SCSEEEEETTSCCCEEEEEEEE---EESCC-EEEEEETTEE
T ss_pred             CCCceeEEEcCCCCEEEEEEEE---EecCC-EEEEEeCCcc
Confidence            4567778999999999999986   66667 4899999865

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.63  E-value=1.3e-05  Score=46.80  Aligned_cols=37  Identities=16%  Similarity=0.346  Sum_probs=30.6

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      +.|...++.+|+.|.|.|.+.   |.|.|. ++|.|+|.+-
T Consensus         6 ~~~~~~~v~~G~~~~l~C~~~---g~P~p~-v~W~k~g~~i   42 (89)
T d1cs6a4           6 DVITDTEADIGSDLRWSCVAS---GKPRPA-VRWLRDGQPL   42 (89)
T ss_dssp             ECCCCEEEETTCCEEEECEEE---EESCCE-EEEEETTEEC
T ss_pred             EECCCEEECCCCcEEEEEEEE---EEcCCE-EEEEEeeccc
Confidence            356778899999999999985   778885 7999998753

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=4.1e-05  Score=44.94  Aligned_cols=38  Identities=18%  Similarity=0.233  Sum_probs=31.0

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      -++|...++.+|+.|.|.|.+.   +.|.+..+.|.|++.+
T Consensus         7 i~~~~~~~v~~G~~v~L~C~v~---g~p~~P~v~W~k~~~~   44 (104)
T d2aw2a1           7 IKRQSEHSILAGDPFELECPVK---YCANRPHVTWCKLNGT   44 (104)
T ss_dssp             CCTTEEEEEETTSCEEEEEEEE---CSSSCCEEEEEEECSS
T ss_pred             EecCCeEEEeCCCeEEEEEEEE---eeCCCCEEEEEecCcc
Confidence            4678889999999999999996   5554346999999864

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.54  E-value=4.2e-05  Score=45.21  Aligned_cols=34  Identities=18%  Similarity=0.395  Sum_probs=26.1

Q ss_pred             EEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        43 ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ++|.+|++|.|.|.++.+.+. ..+.++|.|++..
T Consensus        12 V~~~~G~~v~L~C~~~~~~~~-~~~~v~W~~~~~~   45 (126)
T d1pkoa_          12 IRALVGDEAELPCRISPGKNA-TGMEVGWYRSPFS   45 (126)
T ss_dssp             EEEETTSCEEEEEEEESCCCC-TTSEEEEEEC--C
T ss_pred             EEEEcCCcEEEEEEEECcCCC-CceEEEEeecCCc
Confidence            889999999999999866444 3466899997643

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=4.8e-05  Score=44.01  Aligned_cols=36  Identities=25%  Similarity=0.280  Sum_probs=28.8

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      +.++.+++..|+.|.|.|.+.-|    .| -++|.|+|.+.
T Consensus         5 ~~l~~~~v~~G~~v~l~C~v~~p----~~-~v~W~k~~~~~   40 (90)
T d1x44a1           5 KQLEDTTAYCGERVELECEVSED----DA-NVKWFKNGEEI   40 (90)
T ss_dssp             BCCCCEEEETTEEEEEEEECSSS----SC-CCEEEETTEEC
T ss_pred             cCCCCEEEeCCCcEEEEEEECCC----Cc-eEEEEEeeccc
Confidence            56788999999999999998543    22 38999998753

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.49  E-value=6.3e-05  Score=42.58  Aligned_cols=38  Identities=18%  Similarity=0.322  Sum_probs=29.8

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      +.|...+.+.|+.+.|.|.+.-  + +++..++|.|+|...
T Consensus         7 ~~p~~~~v~~G~~~~l~C~~~~--~-~p~~~v~W~k~~~~~   44 (89)
T d1gl4b_           7 EEQRSQSVRPGADVTFICTAKS--K-SPAYTLVWTRLHNGK   44 (89)
T ss_dssp             CSCCEEEECTTCCEEEEEEEEE--S-SSCCEEEEEEGGGBC
T ss_pred             cCCCeEEEeCCCcEEEEEEccC--C-CCCCEEEEecCCcee
Confidence            4677889999999999999863  2 334568999998653

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=4.6e-05  Score=44.34  Aligned_cols=37  Identities=19%  Similarity=0.411  Sum_probs=31.1

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .+.|+.+++++|+.|.|.|.+.   |.|.|. +.|.|++..
T Consensus        13 ~~~~~~v~v~~G~~v~L~C~v~---G~P~p~-i~W~~~~~~   49 (130)
T d1gxea_          13 GRIPDTIVVVAGNKLRLDVPIS---GDPAPT-VIWQKAITQ   49 (130)
T ss_dssp             CCCCCEEEESSSSCCCCEEECC---SBSCCE-EEEEEECCC
T ss_pred             CCCCCCEEEEcCCeEEEEEEEE---EecCCe-EEEeeCCeE
Confidence            3567889999999999999994   888884 699998764

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.44  E-value=3.7e-05  Score=44.93  Aligned_cols=35  Identities=17%  Similarity=0.272  Sum_probs=28.2

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      ++.+++++|+.|.|.|.+.   +.|.|. +.|.|+|.+.
T Consensus        10 ~~~~~~~~G~~v~l~C~~~---g~P~~~-v~W~k~g~~i   44 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYG---SNPMGY-PNYFKNGKDV   44 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEE---CSSCCC-CEEEETTEEC
T ss_pred             CCCEEEecCCeEEEEEEEE---EecCCE-EEEEEeeeec
Confidence            3567899999999999874   567765 7899998763

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=8.1e-05  Score=43.56  Aligned_cols=37  Identities=22%  Similarity=0.066  Sum_probs=30.3

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      +.|+.++++.|+.+.|.|.+.   +.|.| -++|.|+|..-
T Consensus         5 ~~p~~~~v~~G~~~~l~C~v~---g~p~p-~v~W~k~~~~l   41 (101)
T d2cqva1           5 QFPEDQKVRAGESVELFGKVT---GTQPI-TCTWMKFRKQI   41 (101)
T ss_dssp             CCCCSEEEETTCCEEEEEEEE---SSSSC-EEEEEESSSBC
T ss_pred             eeCCcEEEeCCCcEEEEEEEE---ecCCC-EEEEEeCceee
Confidence            457788999999999999985   55666 48999998753

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.39  E-value=6.2e-05  Score=43.65  Aligned_cols=35  Identities=23%  Similarity=0.351  Sum_probs=29.3

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +|..+++..|+.|.|.|.+.   |.|.|- ++|.|+|.+
T Consensus         7 ~p~~~~v~~G~~~~l~C~~~---g~P~p~-v~W~~~~~~   41 (97)
T d1koaa1           7 KPYGTEVGEGQSANFYCRVI---ASSPPV-VTWHKDDRE   41 (97)
T ss_dssp             CCCCCEEETTSCEEEEEEEE---CSSCCE-EEEEETTEE
T ss_pred             eCCCEEEeCCCcEEEEEEEE---EcCCCE-EEEEEeeec
Confidence            57778899999999999986   566664 799999875

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.36  E-value=8e-05  Score=42.60  Aligned_cols=37  Identities=22%  Similarity=0.533  Sum_probs=28.2

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCc--eEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVP--YVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiP--YVvqW~KdG   75 (80)
                      -|+-++|..|++|.|+|.+.+|.+.+..  ..+-|.|++
T Consensus         6 ~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~   44 (118)
T d1qfoa_           6 SPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDY   44 (118)
T ss_dssp             CCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEEST
T ss_pred             CCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeec
Confidence            4778999999999999999999765543  344566654

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=97.33  E-value=4e-05  Score=44.70  Aligned_cols=37  Identities=19%  Similarity=0.182  Sum_probs=29.7

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      .+.++.++...|+.|+|.|.+..|    .| .++|.|+|.+.
T Consensus         5 ~~~l~d~~v~~G~~~~~~c~vs~p----~~-~v~W~k~g~~i   41 (89)
T d1tiua_           5 EKPLYGVEVFVGETAHFEIELSEP----DV-HGQWKLKGQPL   41 (89)
T ss_dssp             SBCCCCEEEETTSCCCEEEBCSSS----SC-CCBCCSSSCCC
T ss_pred             EcCCcCEEEeCCCcEEEEEEECCC----Cc-EEEEEEeeeec
Confidence            456788999999999999998544    23 48999999764

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.31  E-value=0.0001  Score=42.38  Aligned_cols=35  Identities=14%  Similarity=0.136  Sum_probs=29.9

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .+..++++.|+.+.|.|.+.   |.|.|. ++|.|+|..
T Consensus         8 ~~~~~~v~~G~~~~l~c~~~---g~P~p~-v~W~~~~~~   42 (93)
T d1wiua_           8 ASRKIKIKAGFTHNLEVDFI---GAPDPT-ATWTVGDSG   42 (93)
T ss_dssp             CCCEEEECSSBCCEEEEEEE---CCSSCE-EEEECSSSS
T ss_pred             CCCcEEEeCCCeEEEEEEEE---EecCCe-EEEEeeeee
Confidence            46678899999999999995   778886 699999864

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=97.25  E-value=9.7e-05  Score=42.54  Aligned_cols=36  Identities=22%  Similarity=0.332  Sum_probs=29.6

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|...++..||.|.|.|.+.   +.|.|+.++|.|+|..
T Consensus        10 ~P~~~~v~~G~~v~L~C~~~---~~~~~~~~~w~~~g~~   45 (85)
T d2fcba1          10 EPQWINVLQEDSVTLTCRGT---HSPESDSIQWFHNGNL   45 (85)
T ss_dssp             ESCCSEEETTCEEEEEEECS---SCCCTTCCEEEETTEE
T ss_pred             CCCCeEEcCCCeEEEEEEEe---eccceeEEEeeccccc
Confidence            46667788999999999985   5567788999999865

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=97.23  E-value=7.5e-05  Score=43.07  Aligned_cols=36  Identities=19%  Similarity=0.247  Sum_probs=30.6

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|...+...||.|.|.|...   +.|.|+++.|.|+|..
T Consensus        11 ~P~~~~v~~G~~vtL~C~~~---~~~~~~~~~~~~~~~~   46 (84)
T d1fnla1          11 EPQWYSVLEKDSVTLKCQGA---YSPEDNSTQWFHNESL   46 (84)
T ss_dssp             ESCCSEEETTCCEEEEEECC---CBTTBCCCEEEETTEE
T ss_pred             CCCCcEEeCCCeEEEEEEec---cCCCCeEEEEeeecee
Confidence            46667789999999999985   7788999999999864

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=6.7e-05  Score=43.20  Aligned_cols=37  Identities=14%  Similarity=0.260  Sum_probs=29.5

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ...+..++++.||.|.|.|.+.   +.|.|. ++|.|++.+
T Consensus         8 ~~~~~~v~v~~g~~v~L~C~~~---g~p~p~-v~W~~~~~~   44 (105)
T d1nbqa1           8 HSSEPEVRIPENNPVKLSCAYS---GFSSPR-VEWKFDQGD   44 (105)
T ss_dssp             ECSCSBCCEETTCCCEEECEEE---SCSSEE-EEEEEEETT
T ss_pred             ECCCCeEEEeCCCeEEEEEEeC---CCCCCe-eEEEeeeec
Confidence            3455667899999999999986   677775 799998764

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00019  Score=42.17  Aligned_cols=36  Identities=19%  Similarity=0.257  Sum_probs=27.9

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCc--eEEEeeeccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVP--YVLQWEKKIV   76 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiP--YVvqW~KdG~   76 (80)
                      ++|+.++++.|+.|.|.|.+.   +.|++  .-|+|.|++.
T Consensus         9 ~~P~~~~v~~G~~v~l~C~v~---g~p~~~~p~v~W~k~~~   46 (110)
T d2avga1           9 MRPQDGEVTVGGSITFSARVA---GASLLKPPVVKWFKGKW   46 (110)
T ss_dssp             ECCCCEEEETTSEEEEEEEEE---CCSCSSSCEEEEECSTT
T ss_pred             ECCCeEEEECCCCEEEEEeec---CCCCCCCCEEEEEeCce
Confidence            468889999999999999997   22321  2589999874

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00014  Score=42.84  Aligned_cols=36  Identities=19%  Similarity=0.161  Sum_probs=28.1

Q ss_pred             CCcceEEeecCCeEEEeeecC-CC-CCCCCceEEEeeeccc
Q psy531           38 SNAVHITALLGESVVFNCGVD-FP-GDTPVPYVLQWEKKIV   76 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvd-fP-~~~PiPYVvqW~KdG~   76 (80)
                      ++|+.+++..|+.|.|.|.+. .| ...   --|+|.|++.
T Consensus         5 ~~P~~~~v~~G~~v~l~C~v~g~p~~~~---p~v~W~k~~~   42 (113)
T d2dava1           5 EKPQGGTVKVGEDITFIAKVKAEDLLRK---PTIKWFKGKW   42 (113)
T ss_dssp             SCCCCCEEETTCCEEEEEEEECCCSSSC---CEEEEEESSS
T ss_pred             ECCceEEEeCCCEEEEEEEEccCCCCCC---CEEEEEEeec
Confidence            578899999999999999987 33 122   3489999864

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.19  E-value=0.00016  Score=42.84  Aligned_cols=37  Identities=19%  Similarity=0.338  Sum_probs=27.9

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +.+..++++.|+.|+|.|.+  +.+.|.| .++|.|+|.+
T Consensus         9 ~~~~~v~v~eG~~~~l~C~~--~~~~p~~-~v~W~k~g~~   45 (105)
T d1cs6a2           9 EERDPVKITEGWGVMFTCSP--PPHYPAL-SYRWLLNEFP   45 (105)
T ss_dssp             SCCCCEEEETTSCEEECCCC--CSEESCC-EEEEEESSTT
T ss_pred             CCCCCEEEeCCCeEEEEEEc--cCCCCCC-EEEEEEeecc
Confidence            34456789999999999985  3355544 5899999865

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.18  E-value=0.00014  Score=41.86  Aligned_cols=35  Identities=29%  Similarity=0.438  Sum_probs=29.3

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|..+++..|+.|.|.|.+.   |.|.|. ++|.|++..
T Consensus        11 ~p~~~~~~~G~~v~l~C~~~---g~P~p~-i~W~k~~~~   45 (91)
T d1cs6a3          11 FPADTYALTGQMVTLECFAF---GNPVPQ-IKWRKLDGS   45 (91)
T ss_dssp             CCSEEEEETTCCEEEECEEE---EESCCE-EEEEECCSC
T ss_pred             CCCcEEEecCCcEEEEEEEE---EccCCE-EEEEecccc
Confidence            47889999999999999985   778785 799997643

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=2.9e-05  Score=44.90  Aligned_cols=35  Identities=14%  Similarity=0.365  Sum_probs=29.6

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|...+++.|+.|.|.|.+.   |.|.|- ++|.|+|..
T Consensus         8 ~~~~~~v~~G~~v~l~C~~~---g~P~p~-v~W~~~~~~   42 (92)
T d2ifga1           8 QVPNASVDVGDDVLLRCQVE---GRGLEQ-AGWILTELE   42 (92)
T ss_dssp             ECCSSCCBTTCCEEEEEEEE---CSSCCC-CCEEESCCC
T ss_pred             eCCCEEEeCCCEEEEeeecc---CCCCcE-EEEEECCce
Confidence            45667899999999999986   788885 899999864

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.18  E-value=0.00011  Score=42.58  Aligned_cols=36  Identities=22%  Similarity=0.328  Sum_probs=29.6

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..|...+.+.|+.+.|.|.+.   |.|.| .++|.|+|.+
T Consensus         6 ~~P~~~~v~~G~~~~l~C~v~---g~p~p-~v~W~~~~~~   41 (92)
T d1epfa2           6 NAPTPQEFKEGEDAVIVCDVV---SSLPP-TIIWKHKGRD   41 (92)
T ss_dssp             ECCSSEECCTTSCEEECCEEE---CSSCC-EEEEEETTEE
T ss_pred             EcCCCEEEeCCCcEEEEEEEe---ecCCC-eEEEEEcCcc
Confidence            467888999999999999974   55655 6899999864

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=97.10  E-value=0.00018  Score=41.81  Aligned_cols=37  Identities=19%  Similarity=0.364  Sum_probs=29.4

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..++...+...|+.|.|.|.+.   |.|.|- ++|.|+|.+
T Consensus         9 ~~~~~~~~v~~G~~v~l~C~~~---g~P~p~-i~W~kng~~   45 (97)
T d3dara1           9 KMEKRLHAVPAANTVKFRCPAG---GNPMPT-MRWLKNGKE   45 (97)
T ss_dssp             TTSCCEEEECTTCCEEEECCEE---EESCCE-EEEEETTEE
T ss_pred             ccccccEEECCCCcEEEEEEEe---EECCCE-EEEEECCEe
Confidence            4455566789999999999875   667774 899999875

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00028  Score=40.34  Aligned_cols=33  Identities=24%  Similarity=0.606  Sum_probs=26.9

Q ss_pred             ceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           41 VHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        41 ~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +.++|++|+.|.|.|.+.   |.|.|. ++|.|++..
T Consensus         9 ~~~~~~~G~~v~l~C~~~---g~p~p~-i~W~~~~~~   41 (90)
T d1vcaa2           9 SRYLAQIGDSVSLTCSTT---GCESPF-FSWRTQIDS   41 (90)
T ss_dssp             SEEEEETTSCEEEEEEEE---SCSSCE-EEEEETTCC
T ss_pred             CcEEEECCCEEEEEEecc---CCCCce-EEEEecCcc
Confidence            456799999999999984   778876 789987654

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00031  Score=39.98  Aligned_cols=32  Identities=22%  Similarity=0.395  Sum_probs=24.5

Q ss_pred             ceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           41 VHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        41 ~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +-+.|.+|++|.|.|.+.    +|+|. +.|.|++..
T Consensus         3 ~~v~~~~G~sVtl~c~~~----~p~~~-v~W~~~~~~   34 (93)
T d1ccza1           3 QQIYGVVYGNVTFHVPSN----VPLKE-VLWKKQKDK   34 (93)
T ss_dssp             EEEEEETTCCEEECCCCS----SCCSC-EEEEETTEE
T ss_pred             cEEEEEECCCEEEEecCC----CCCcE-EEEEEeccc
Confidence            457899999999999754    45554 679998754

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=96.99  E-value=0.00017  Score=41.67  Aligned_cols=33  Identities=24%  Similarity=0.491  Sum_probs=27.4

Q ss_pred             ceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           41 VHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        41 ~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..++++.|+.+.|.|.+.   |.|.|- ++|.|+|.+
T Consensus        11 ~~~~v~~G~~~~l~C~~~---g~P~p~-v~W~~~~~~   43 (89)
T d1biha4          11 KVIVVKQGQDVTIPCKVT---GLPAPN-VVWSHNAKP   43 (89)
T ss_dssp             SEEEECTTSCEEEECEEE---EESCCC-CEEEETTEE
T ss_pred             CCEEEeCCCeEEEEEEEE---EeCCCE-EEEEeCCcc
Confidence            457799999999999985   667675 699999875

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00033  Score=41.72  Aligned_cols=39  Identities=21%  Similarity=0.306  Sum_probs=28.5

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCC---CCceEEEeeeccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDT---PVPYVLQWEKKIV   76 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~---PiPYVvqW~KdG~   76 (80)
                      +-|+-+||..|++|.|+|.+++|.+.   .-...+-|.|++.
T Consensus         6 ~~~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~   47 (121)
T d2g5ra1           6 TMQSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGN   47 (121)
T ss_dssp             ECCSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-
T ss_pred             EeCCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecC
Confidence            35778999999999999999998532   2335677888754

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=96.98  E-value=0.00021  Score=41.67  Aligned_cols=36  Identities=22%  Similarity=0.461  Sum_probs=28.9

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      .|+.+++..|+.|.|.|.+.   +.|.| -+.|.|+|.+-
T Consensus        14 ~~~~~~v~~G~~~~l~C~~~---g~P~p-~v~W~k~~~~i   49 (102)
T d1fhga_          14 TILDMEVVEGSAARFDCKVE---GYPDP-EVMWFKDDNPV   49 (102)
T ss_dssp             CCCCEEEETTSCEEEEEEEE---EESCC-EEEEEETTEEC
T ss_pred             CCCcEEEecCCcEEEEEEEE---eccCC-eEEEEeeeccc
Confidence            56678899999999999996   45555 47999998753

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.95  E-value=0.00022  Score=41.16  Aligned_cols=37  Identities=16%  Similarity=0.302  Sum_probs=27.2

Q ss_pred             CCcceEEeec---CCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           38 SNAVHITALL---GESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        38 ~~P~~ltA~v---Ge~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      ++|..++...   |+.|.|.|.+.   |.|.| .++|.|+|.+-
T Consensus         9 ~~P~~~~~~~g~~~~~v~l~C~~~---g~P~p-~v~W~~ng~~i   48 (97)
T d1cs6a1           9 EQPAHTLFPEGSAEEKVTLTCRAR---ANPPA-TYRWKMNGTEL   48 (97)
T ss_dssp             ECCCCEEEETTCSCCEEEECCEEE---EESCC-EEEEEETTEEC
T ss_pred             EeCCCEEEECccCCCeEEEEEEEE---EeCCC-EEEEEEeeeec
Confidence            3566665554   58999999985   67777 47999998753

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.0008  Score=38.45  Aligned_cols=35  Identities=17%  Similarity=0.190  Sum_probs=29.1

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      .|...++..|+.|.|.|.+.   +.|.|-.+.|.|.+.
T Consensus         8 ~~~~~~v~~G~~v~l~C~v~---g~P~p~~i~W~k~~~   42 (101)
T d3b5ha1           8 VKSSEHINEGETAMLVCKSE---SVPPVTDWAWYKITD   42 (101)
T ss_dssp             SCSEEEECTTSCEEEEEECC---CSSCCCEEEEEECCS
T ss_pred             cCCcEEECcCCeEEEEEEEE---ecCCeeEEEEEeccc
Confidence            56677899999999999986   677777899998764

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00019  Score=41.14  Aligned_cols=36  Identities=17%  Similarity=0.181  Sum_probs=26.5

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +|.-.+...|+.|.|.|.+.   +.|.|....|.|+|..
T Consensus         7 ~P~~~~v~~G~~v~L~C~~~---~~~~~~~~~~~~~~~~   42 (82)
T d1f2qa1           7 NPPWNRIFKGENVTLTCNGN---NFFEVSSTKWFHNGSL   42 (82)
T ss_dssp             ESSCSEEETTCCEEEECCTT---CC----CCEEEETTEE
T ss_pred             cCCCeEEeCCCeEEEEEEEe---eeeeecceeeeeeeee
Confidence            46666788999999999985   6777888999999865

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00026  Score=42.33  Aligned_cols=39  Identities=15%  Similarity=0.199  Sum_probs=30.6

Q ss_pred             CCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           36 DISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        36 ~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ++++|.-+.+.+||.++|.|.+..  +. +++-+.|.|+|..
T Consensus         5 ~~~~~~~~~~~~~e~~~l~C~~~~--~~-~~~~i~W~k~~~~   43 (101)
T d1iray1           5 EREEKIILVSSANEIDVRPCPLNP--NE-HKGTITWYKDDSK   43 (101)
T ss_dssp             CEECCCCEEEETTSCEEECCCCCG--GG-CSSEEEEECSSTT
T ss_pred             ecCCCcEEEEeCCCeEEEEeeCCC--CC-CCceEEEEECCcc
Confidence            466888888999999999999864  22 3455899999854

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00058  Score=39.87  Aligned_cols=33  Identities=15%  Similarity=0.409  Sum_probs=24.8

Q ss_pred             eEEeecCCeEEEeeecCCCCCCCCceEE-Eeeec
Q psy531           42 HITALLGESVVFNCGVDFPGDTPVPYVL-QWEKK   74 (80)
Q Consensus        42 ~ltA~vGe~VVlnCdvdfP~~~PiPYVv-qW~Kd   74 (80)
                      -++|.+||.|.|+|.+..+.+.+...+. .|.|+
T Consensus         3 ~V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~   36 (110)
T d1ncna_           3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQ   36 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEET
T ss_pred             EEEEEeCCcEEEEEEEeCCCCCCcceeEEEeecc
Confidence            4789999999999999988766655444 44443

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00041  Score=40.23  Aligned_cols=34  Identities=15%  Similarity=0.209  Sum_probs=28.1

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .+.+++..|+.|.|.|.+.   +.|.|. ++|.|+|..
T Consensus         9 ~~~i~v~~G~~v~l~C~v~---g~P~p~-i~W~~~g~~   42 (107)
T d1iray3           9 NETMEVDLGSQIQLICNVT---GQLSDI-AYWKWNGSV   42 (107)
T ss_dssp             SEEEECCTTCCEEEEEEEE---ECTTCE-EEEEETTEE
T ss_pred             CCEEEEeCCCEEEEEEEec---cCCCCe-EEEEECCcc
Confidence            3457799999999999995   778886 789998865

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=96.82  E-value=0.00032  Score=40.55  Aligned_cols=36  Identities=28%  Similarity=0.302  Sum_probs=28.3

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ++|+..++..|+.|.|.|.+.   |.|.|- ++|.|+|.+
T Consensus         9 ~~~~~~~v~~g~~v~l~c~v~---g~P~p~-v~W~k~~~~   44 (98)
T d1g1ca_           9 ERIQSQTVGQGSDAHFRVRVV---GKPDPE-CEWYKNGVK   44 (98)
T ss_dssp             ECCCCEEEETTSCEEEEEEEE---EESCCE-EEEEETTEE
T ss_pred             cCCCcEEEcCCCcEEEEEEEE---EecCCe-EEEEeCceE
Confidence            356678899999999999996   445443 699999865

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.00095  Score=39.43  Aligned_cols=35  Identities=14%  Similarity=0.274  Sum_probs=26.3

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      +|+.++|..||+|.|.|.++  ....--+.+.|.|+.
T Consensus         2 ~~~~v~~~~G~svtl~C~~~--~~~~~~~~~~W~r~~   36 (108)
T d1hkfa_           2 KAQVLQSVAGQTLTVRCQYP--PTGSLYEKKGWCKEA   36 (108)
T ss_dssp             CCEEEEECTTCCEEEEEECC--CCTTCCCEEEEEEEE
T ss_pred             CCEEEEEcCCCCEEEEEEEC--CCCCCCCEEEEEEeC
Confidence            57889999999999999754  333334567899864

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.75  E-value=0.00074  Score=38.78  Aligned_cols=35  Identities=14%  Similarity=0.274  Sum_probs=27.6

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .+..+++..|+.|.|.|.+.   +.|.| .+.|.|.+..
T Consensus         7 ~~~~v~v~~G~~v~l~C~~~---g~p~p-~v~W~~~~~~   41 (102)
T d1f97a1           7 AQSDVQVPENESIKLTCTYS---GFSSP-RVEWKFVQGS   41 (102)
T ss_dssp             SCSEEEEETTCCEEEECEEE---SCSSE-EEEEEEEETT
T ss_pred             cCCcEEEeCCCEEEEEEEcC---CCCCC-eEEEEecccc
Confidence            45567899999999999995   66767 4789997654

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.0002  Score=42.46  Aligned_cols=36  Identities=17%  Similarity=0.265  Sum_probs=26.6

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      -|+.++|..|++|.|+|.++ +.....++.+.|.|..
T Consensus         5 ~P~~V~~~~G~svtL~C~y~-~~~~~~~~~~~W~r~~   40 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYP-PTSVNRHTRKYWCRQG   40 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECC-CCHHHHHSCEEEEEC-
T ss_pred             CCCEEEEcCCCCEEEEEEEC-CCCCccceeEEEEEcC
Confidence            47889999999999999865 2223345678898864

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=96.73  E-value=0.00063  Score=39.61  Aligned_cols=32  Identities=3%  Similarity=-0.046  Sum_probs=25.2

Q ss_pred             EEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        43 ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .....|+.|.|+|..+   +.+++.-+.|.|+|..
T Consensus        12 ~~v~eG~~v~L~C~~~---~~~p~~~~~W~kng~~   43 (89)
T d1fnla2          12 WVFKEEDPIHLRCHSW---KNTALHKVTYLQNGKD   43 (89)
T ss_dssp             SEEETTCCEEEEEEEC---TTCCCEEEEEEETTEE
T ss_pred             CeEccCCeEEEEEEec---CCCCCcEEEEEEcccc
Confidence            3478999999999864   3455678999999864

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.70  E-value=0.00088  Score=38.51  Aligned_cols=34  Identities=21%  Similarity=0.237  Sum_probs=26.5

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|...+..+|+++.|.|.+.   +.|.+--++|.|++
T Consensus         6 ~P~~~~v~~G~~~~l~C~v~---g~p~~~~v~W~~~~   39 (97)
T d1epfa1           6 VPSQGEISVGESKFFLCQVA---GDAKDKDISWFSPN   39 (97)
T ss_dssp             ESSSEEEETTCCEEEEEEEC---CCSCCCEEEEECTT
T ss_pred             ECCCEEEccCCcEEEEEEEE---eccCCCEEEEEEee
Confidence            46778899999999999985   45543468999953

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.61  E-value=0.0012  Score=39.44  Aligned_cols=36  Identities=19%  Similarity=0.438  Sum_probs=28.3

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|.|..++++.|++|.|+|.++-....   |.+.|-|+.
T Consensus         3 tQ~p~~v~~~~G~~Vtl~C~~~~~~~~---~~i~WYrQ~   38 (115)
T d1fo0a_           3 TQTQTSISVMEKTTVTMDCVYETQDSS---YFLFWYKQT   38 (115)
T ss_dssp             ECCCCEEEEETTCCEEECCEECCCCSS---CEEEEEEEC
T ss_pred             EccCCEEEEcCCCCEEEEEEEcCCCCC---CCCEEEEeC
Confidence            478999999999999999987644333   458898863

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.61  E-value=0.0011  Score=38.36  Aligned_cols=31  Identities=19%  Similarity=0.492  Sum_probs=24.1

Q ss_pred             EeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           44 TALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        44 tA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ++.+|+.|.|.|.+.  .+.|.| -++|.|+|..
T Consensus        13 ~v~~G~~v~L~C~~~--~g~p~~-~v~W~~~~~~   43 (110)
T d1f97a2          13 SVTIGNRAVLTCSEH--DGSPPS-EYSWFKDGIS   43 (110)
T ss_dssp             EEETTSCEEEEEECS--CCBSCC-EEEEEETTEE
T ss_pred             EEecCCeEEEEEEee--cCCCCC-EEEEEeCCeE
Confidence            478999999999874  345554 5799999864

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.00051  Score=40.22  Aligned_cols=36  Identities=17%  Similarity=0.011  Sum_probs=30.7

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..|..++.+.|+.+.|.|.++   |.|.| -+.|.|+|..
T Consensus         9 ~~p~~~~~~~G~~~~l~C~a~---G~P~P-~v~W~k~g~~   44 (84)
T d2oz4a3           9 DCPGNWTWPENSQQTPMCQAW---GNPLP-ELKCLKDGTF   44 (84)
T ss_dssp             GSCSEEEEETTCEECCCCCCE---EESCC-EEEEEETTTE
T ss_pred             CCCccEEEeCCCEEEEEEEEe---EcCcc-EEEEEEeecc
Confidence            347889999999999999874   88889 5799999864

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.48  E-value=0.0018  Score=38.90  Aligned_cols=35  Identities=26%  Similarity=0.441  Sum_probs=28.1

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|.|..++++.|++|.|.|.+.-.    .-|-+.|.|+.
T Consensus         4 ~Q~P~~v~v~~G~sv~L~C~~s~~----~~~~~~Wyrq~   38 (113)
T d2bnqd1           4 TQIPAALSVPEGENLVLNCSFTDS----AIYNLQWFRQD   38 (113)
T ss_dssp             ECSSSEEEEETTCCEEEEEEESCC----CEEEEEEEEEC
T ss_pred             EeeCCEEEEcCCCCEEEEEEEecC----cccCCeEEEec
Confidence            478999999999999999997532    23558899964

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.0023  Score=37.23  Aligned_cols=34  Identities=18%  Similarity=0.272  Sum_probs=25.7

Q ss_pred             ceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           41 VHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        41 ~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ..++.++||.+.|.|.+.  .+.|.| -++|.|.+.+
T Consensus        11 ~~~~~~~G~~~~l~C~~~--~g~p~p-~v~W~~~~~~   44 (90)
T d1gsma1          11 PVVAVALGASRQLTCRLA--CADRGA-SVQWRGLDTS   44 (90)
T ss_dssp             SEEEEETTCCEEEEEEEC--CSSTTC-EEEEESSTTT
T ss_pred             CeEEEEeCCcEEEEEEec--CCCCcc-EEEEEEeeee
Confidence            457789999999999873  244445 5999997764

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.0018  Score=37.48  Aligned_cols=30  Identities=10%  Similarity=0.118  Sum_probs=23.7

Q ss_pred             EEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        43 ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .+...|+.|.|.|.+.-    |.| -++|.|+|..
T Consensus        16 ~~v~~G~~v~l~c~v~~----p~~-~v~W~k~g~~   45 (94)
T d1pd6a_          16 YQVSKGHKIRLTVELAD----HDA-EVKWLKNGQE   45 (94)
T ss_dssp             EEEETTSCEEEEEECSS----SSS-CCEEEESSSE
T ss_pred             EEECcCCeEEEEEEECC----CCc-eEEEEEcCcc
Confidence            45889999999999843    444 3799999875

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.29  E-value=0.0014  Score=39.56  Aligned_cols=36  Identities=11%  Similarity=0.229  Sum_probs=28.4

Q ss_pred             CCCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           35 PDISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        35 g~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |..|.|.++..+.||+|-|+|..+..  .   +.+.|-|+-
T Consensus         1 gVtQsP~~~~~~~G~svtl~C~~s~~--~---~~~~WYrQ~   36 (114)
T d1ogae1           1 GITQSPKYLFRKEGQNVTLSCEQNLN--H---DAMYWYRQD   36 (114)
T ss_dssp             CEECSCSEEEEETTCCEEECCEECSC--C---SEEEEEEEC
T ss_pred             CcEEcCCeEEEcCCCCEEEEEEEecC--C---CcEEEEeec
Confidence            34588999999999999999997643  2   347899873

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.0012  Score=38.16  Aligned_cols=32  Identities=13%  Similarity=0.072  Sum_probs=25.5

Q ss_pred             EEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        43 ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .....||.|.|.|...   +.++|..+.|.|+|..
T Consensus        10 ~~V~eG~~v~L~C~~~---~~~~~~~~~w~k~g~~   41 (89)
T d1f2qa2          10 EVVMEGQPLFLRCHGW---RNWDVYKVIYYKDGEA   41 (89)
T ss_dssp             SEEETTSCEEEEEEEG---GGCCEEEEEEEETTEE
T ss_pred             CeEeCCCEEEEEEEec---CCCCCeEEEEEEeeec
Confidence            3367899999999974   4456789999999874

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.18  E-value=0.0013  Score=39.67  Aligned_cols=36  Identities=14%  Similarity=0.300  Sum_probs=28.7

Q ss_pred             CCCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           35 PDISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        35 g~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |..|.|.++.++.|++|.|+|..++  +.   |-+.|.|+.
T Consensus         1 gVtQ~P~~~~~~~G~svtl~C~~s~--~~---~~~~WYrQ~   36 (112)
T d2bnub1           1 GVTQTPKFQVLKTGQSMTLQCAQDM--NH---EYMSWYRQD   36 (112)
T ss_dssp             CEEEECSEEEEETTCCEEEEEEESS--CC---SEEEEEEEE
T ss_pred             CeEECCCeEEECCCCCEEEEEEEEC--Cc---cceEecccc
Confidence            3457899999999999999998764  33   348999974

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.17  E-value=0.0019  Score=38.84  Aligned_cols=36  Identities=17%  Similarity=0.239  Sum_probs=27.8

Q ss_pred             CCCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           35 PDISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        35 g~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |..|.|.+++++.|++|-|+|..+-  +.   +.+.|-|+-
T Consensus         1 gVtQ~P~~~~~~~G~svtl~C~~~~--~~---~~~~WYrQ~   36 (111)
T d2esve1           1 GVTQFPSHSVIEKGQTVTLRCDPIS--GH---DNLYWYRRV   36 (111)
T ss_dssp             CCEEECSEEEEETTCCEEEEEECCT--TC---SEEEEEEEE
T ss_pred             CcEECCCEEEECCCCCEEEEEEECC--CC---ceEEEEEEc
Confidence            4568899999999999999997432  22   347899873

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.0026  Score=36.25  Aligned_cols=32  Identities=22%  Similarity=0.467  Sum_probs=24.3

Q ss_pred             EEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        43 ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .++++|+.|.|.|.+.  .+.|.| .++|.|+|..
T Consensus        12 ~~v~~G~~v~l~C~~~--~g~p~p-~v~W~~~~~~   43 (104)
T d1nbqa2          12 SSATIGNRAVLTCSEQ--DGSPPS-EYTWFKDGIV   43 (104)
T ss_dssp             SEEETTSCEEECCCCC--SCBSCC-EEEEEETTCC
T ss_pred             CEEecCCcEEEEEEee--cCCCCC-EEEEEECCEE
Confidence            3568899999999873  245555 4899999865

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=96.11  E-value=0.0016  Score=37.65  Aligned_cols=32  Identities=13%  Similarity=0.118  Sum_probs=24.4

Q ss_pred             EEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        43 ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .+.+.||.|.|.|...   +.+++--+.|.|+|..
T Consensus        10 ~~v~eG~~v~L~C~~~---~~~p~~~~~W~k~g~~   41 (88)
T d2fcba2          10 LEFQEGETIVLRCHSW---KDKPLVKVTFFQNGKS   41 (88)
T ss_dssp             SEECTTCCEEEEEEEG---GGCCCEEEEEEETTEE
T ss_pred             CeEecCCeEEEEEEec---CCCCCcEEEEEeeccc
Confidence            3467899999999863   3444566899999864

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.003  Score=36.49  Aligned_cols=31  Identities=13%  Similarity=0.326  Sum_probs=23.2

Q ss_pred             ceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           41 VHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        41 ~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      +.+.|++|++|.|+|.+.-    ...+.+.|.|+.
T Consensus         2 ~~V~~~~G~svtL~C~~s~----~~~~~~~W~~~~   32 (97)
T d2nxyb1           2 KVVLGKKGDTVELTCTASQ----KKSIQFHWKNSN   32 (97)
T ss_dssp             EEEEEETTSCEEECCBCSS----SSCCCEEEEETT
T ss_pred             cEEEEEcCCcEEEEEEEec----CCCceEEEEEeC
Confidence            4678999999999998642    234558998763

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.99  E-value=0.0041  Score=36.64  Aligned_cols=35  Identities=17%  Similarity=0.343  Sum_probs=25.5

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      ..-+.|.+|++|.|+|. .+|...++ .-+.|.|.+.
T Consensus         2 s~tV~G~~G~sV~L~~~-~~~~~~~i-~~I~W~~~~~   36 (98)
T d1hnga1           2 SGTVWGALGHGINLNIP-NFQMTDDI-DEVRWERGST   36 (98)
T ss_dssp             EEEEEEETTSCEEECCT-TCCCCTTE-EEEEEEETTE
T ss_pred             CcEEEEecCCCEEEECC-CCCCccch-heeeeecccc
Confidence            34577999999999997 34544443 6689998754

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=95.99  E-value=0.0032  Score=37.03  Aligned_cols=34  Identities=18%  Similarity=0.428  Sum_probs=27.3

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      .|.|..++++.||+|-|+|.++-.   .. +.+.|.|+
T Consensus         3 ~Q~P~~~~~~~G~~vtl~C~~~~~---~~-~~~~WYrq   36 (110)
T d1u3ha1           3 RQSPQSLTVWEGETAILNCSYENS---AF-DYFPWYQQ   36 (110)
T ss_dssp             ECSCSSEEEETTSCEEEEEEECCT---TE-EEEEEEEE
T ss_pred             EecCCEEEEcCCCCEEEEEEecCC---CC-cEEEEEee
Confidence            578999999999999999987632   22 34899987

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.98  E-value=0.002  Score=36.90  Aligned_cols=34  Identities=21%  Similarity=0.215  Sum_probs=24.8

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      +...++..|+.|.|.|.+.   +.|+  -++|.|+|.+.
T Consensus        10 ~~~~~v~~g~~v~l~C~~~---~~~~--~v~W~~~~~~l   43 (96)
T d1l6za2          10 VTNTTVKELDSVTLTCLSN---DIGA--NIQWLFNSQSL   43 (96)
T ss_dssp             CSCSEECTTSCEEEEECCC---CSSC--EEEEEETTEEC
T ss_pred             cCceEEeCCCeEEEEEccC---CCCC--CEEEEEeeeec
Confidence            3446789999999999863   3232  46899998753

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.94  E-value=0.004  Score=37.15  Aligned_cols=36  Identities=25%  Similarity=0.406  Sum_probs=27.6

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|.|..+++..||+|.|+|.++-....  +| +.|.|+.
T Consensus         4 tQ~~~~v~v~~G~~VtL~C~~~~~~~~--~~-~~Wyrq~   39 (114)
T d2ak4d1           4 TQAQTEISVVEKEDVTLDCVYETRDTT--YY-LFWYKQP   39 (114)
T ss_dssp             ECCCCEEEEETTCCEEECCEEECSCSS--CE-EEEEEEC
T ss_pred             EecCCeEEEeCCCCEEEEEEEcCCCcC--cc-EEEEEcc
Confidence            467899999999999999986544333  34 7899863

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.93  E-value=0.0039  Score=37.43  Aligned_cols=35  Identities=14%  Similarity=0.357  Sum_probs=26.1

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      +.|..++++.||+|-|+|...-  ...-.| +.|.|+.
T Consensus         3 ~qP~~~~~~~G~svtl~C~~s~--~~~~~~-~~WYrQ~   37 (112)
T d1kgcd1           3 TQPNSMESNEEEPVHLPCNHST--ISGTDY-IHWYRQL   37 (112)
T ss_dssp             ECCSEEEEETTSCEEEEEEESC--CCTTCC-EEEEEEC
T ss_pred             ECCCEEEECCCCCEEEEEEEeC--CCcccc-EEEEEEC
Confidence            3578899999999999998652  222235 7999973

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.89  E-value=0.0031  Score=37.78  Aligned_cols=35  Identities=17%  Similarity=0.176  Sum_probs=27.4

Q ss_pred             CCCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           35 PDISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        35 g~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      |..|.|.+++++.|++|-|+|...-  +.   +.+.|-|+
T Consensus         1 gVtQ~P~~~~~~~G~svtl~C~~~~--~~---~~i~WYrQ   35 (112)
T d1kgce1           1 GVSQSPRYKVAKRGQDVALRCDPIS--GH---VSLFWYQQ   35 (112)
T ss_dssp             CCEEECSEEEEETTCCEEEEEECCT--TC---CEEEEEEE
T ss_pred             CeEECCCeEEECCCCCEEEEEEECC--CC---CEEEeeee
Confidence            4568899999999999999998442  22   34789886

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.88  E-value=0.004  Score=37.72  Aligned_cols=34  Identities=18%  Similarity=0.408  Sum_probs=27.0

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      |.|..+++..|+.|.|+|.+.-..+   -|.+.|.|+
T Consensus         4 qsP~~l~v~~G~~vtl~C~~~~~~~---~~~~~Wyrq   37 (114)
T d3bp5a1           4 FYPAWLTVSEGANATFTCSLSNWSE---DLMLNWNRL   37 (114)
T ss_dssp             EESSEEEEETTCCEEEEEEESCCCT---TCEEEEEEE
T ss_pred             ECCCeEEECCCCCEEEEEEECCCCC---cceEEEEEE
Confidence            5799999999999999998743222   356899986

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=95.80  E-value=0.0035  Score=37.56  Aligned_cols=36  Identities=14%  Similarity=0.217  Sum_probs=28.1

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      -|.|..++++.|++|.|+|.++...+.   +-+.|-|+.
T Consensus         5 tQ~P~~~~v~~G~tv~l~C~~~~~~~~---~~~~WYrq~   40 (108)
T d2fx7l1           5 TQSPGTQSLSPGERATLSCRASQSVGN---NKLAWYQQR   40 (108)
T ss_dssp             ECSSSEEEECTTCCEEEEEEESSCCGG---GCEEEEEEC
T ss_pred             EeeCCeEEECCCCCEEEEEEeecCCCC---ccceeEecc
Confidence            378999999999999999987644333   237899874

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=95.72  E-value=0.0039  Score=37.74  Aligned_cols=35  Identities=23%  Similarity=0.239  Sum_probs=27.6

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      .|.|..+++..||+|-|+|.++-..+.   |.+.|.|+
T Consensus         4 tQ~p~~~~~~~G~~vtL~C~~~~~~~~---~~i~Wyrq   38 (116)
T d1tvda_           4 TQSSPDQTVASGSEVVLLCTYDTVYSN---PDLFWYRI   38 (116)
T ss_dssp             ECCSCCEEEETTCCEEECCEEECCSSS---CCEEEEEE
T ss_pred             EccCCCEEEcCCCCEEEEEEEcCCccC---CcEEEEEe
Confidence            467899999999999999987544333   45899885

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=95.71  E-value=0.003  Score=38.22  Aligned_cols=35  Identities=17%  Similarity=0.436  Sum_probs=27.3

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      -|.|..+++..|++|.|+|...-.    .-+.+.|-|+.
T Consensus         5 tQ~P~sl~~~~G~svtL~C~~s~~----~~~~~~WYrq~   39 (107)
T d1tjgl1           5 TQSPSSLSASVGDRITITCRASQG----VTSALAWYRQK   39 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSC----CTTCEEEEEEC
T ss_pred             EeeCCEEEECCCCCEEEEEEECCC----CCccEEEEecc
Confidence            478999999999999999987532    23457788864

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.0074  Score=36.32  Aligned_cols=37  Identities=11%  Similarity=0.068  Sum_probs=30.0

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      .|..+.|..|+.|-|.|.+.+. +.+--|-+.|.|+..
T Consensus         5 QP~~~~~~~g~~vtL~C~~~~~-~~~~~~~v~WyrQ~~   41 (118)
T d1i8lc_           5 QPAVVLASSRGIASFVCEYASP-GKATEVRVTVLRQAD   41 (118)
T ss_dssp             CCSEEECCSSSCEEEEEEECCC-SCCSEEEEEEEEEST
T ss_pred             CCCEEEEeCCCcEEEEEEcccc-ccccceeEEEEEECC
Confidence            4888999999999999999877 334457789999853

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.68  E-value=0.004  Score=37.35  Aligned_cols=35  Identities=20%  Similarity=0.448  Sum_probs=27.7

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|.|..++++.|++|.|+|.+.-.   .-+| +.|.|+.
T Consensus         4 ~Q~P~~~~~~~G~~vtL~C~~~~~---~~~~-~~Wyrq~   38 (114)
T d2cdea1           4 EQSPQSLIILEGKNCTLQCNYTVS---PFSN-LRWYKQD   38 (114)
T ss_dssp             EEECSEEEEETTCCCEEEEEECCS---CCSE-EEEEEEC
T ss_pred             EeeCCEEEEeCCCCEEEEEEEcCC---CccC-ceEEEec
Confidence            467999999999999999986532   2345 6999875

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=95.67  E-value=0.0052  Score=36.68  Aligned_cols=34  Identities=9%  Similarity=0.227  Sum_probs=26.7

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      |.|..++++.|++|-|+|.+.-...   -+.+.|.|+
T Consensus         3 Q~P~~~~v~~G~sv~l~C~~~~~~~---~~~v~Wyrq   36 (115)
T d2atpb1           3 QTPSSLLVQTNHTAKMSCEVKSISK---LTSIYWLRE   36 (115)
T ss_dssp             EECSEEEECTTSCEEEEEECCSSCC---SSEEEEEEE
T ss_pred             eeCCcEEEcCCCCEEEEEEEeCCCC---CCceEEEEe
Confidence            6799999999999999998863222   244889886

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.0057  Score=35.60  Aligned_cols=31  Identities=10%  Similarity=0.112  Sum_probs=23.8

Q ss_pred             EEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531           43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        43 ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~   78 (80)
                      .+.+.|+.+.|.|.+.   + |.| -+.|.|+|.+-
T Consensus         7 ~~~~~G~~~~l~C~~~---g-~~~-~v~W~~~g~~l   37 (92)
T d1olza1           7 HFFKHGGTAELKCSQK---S-NLA-RVFWKFQNGVL   37 (92)
T ss_dssp             EEEETTSCEEECCCCS---C-TTC-EEEEEESSSBC
T ss_pred             eeEeCCCEEEEEEEee---c-cCC-ceeeecCcccc
Confidence            4589999999999875   3 445 56899988653

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.65  E-value=0.0045  Score=36.96  Aligned_cols=35  Identities=11%  Similarity=0.240  Sum_probs=27.4

Q ss_pred             CCCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           35 PDISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        35 g~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      |..|.|.++.++.|++|-|+|..+  .+.   |.+.|-|+
T Consensus         1 gVtQ~P~~~~~~~G~svtl~C~~~--~~~---~~~~WYrQ   35 (113)
T d2ntsp1           1 GVTQTPRYLIKTRGQQVTLSCSPI--SGH---RSVSWYQQ   35 (113)
T ss_dssp             CCEEECSEEEEETTCCEEEEEECS--TTC---CEEEEEEE
T ss_pred             CeEeCCCeEEECCCCCEEEEEEEC--CCC---CEEEEEEe
Confidence            456889999999999999999843  233   34789996

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=95.58  E-value=0.0053  Score=37.06  Aligned_cols=35  Identities=23%  Similarity=0.352  Sum_probs=27.6

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|.|..+++..|++|.|.|.+.--   .-+| +.|.|+.
T Consensus         5 ~Q~~~~v~v~~G~~vtL~C~~~~~---~~~~-i~Wyrq~   39 (115)
T d1lp9e1           5 TQTEGLVTLTEGLPVMLNCTYQST---YSPF-LFWYVQH   39 (115)
T ss_dssp             EECCSEEEEETTSCEEECEEEECS---SSCC-EEEEEEC
T ss_pred             EcCCCeEEECCCCCEEEEEEEeCC---CcCC-eeEEEeC
Confidence            477899999999999999997642   2334 7999873

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.56  E-value=0.005  Score=36.85  Aligned_cols=34  Identities=21%  Similarity=0.399  Sum_probs=26.9

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|.|.++.++.|++|-|+|..+.  +.  .| +.|.|+.
T Consensus         4 ~QsP~~~~~~~G~~v~l~C~~~~--~~--~~-~~WYrQ~   37 (113)
T d1j8he1           4 TQSSRYLVKRTGEKVFLECVQDM--DH--EN-MFWYRQD   37 (113)
T ss_dssp             EESCSEEEEETTCCEEECEEESS--CC--SE-EEEEEEE
T ss_pred             EccCCEEEECCCCCEEEEEEEcC--Cc--cE-EEeEEec
Confidence            47899999999999999998653  32  34 6799873

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.0021  Score=38.91  Aligned_cols=37  Identities=24%  Similarity=0.218  Sum_probs=28.7

Q ss_pred             CCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           36 DISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        36 ~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .++.|..+|.++||+|-|+|.+.-....   +.+.|.|+.
T Consensus         3 ~~~sP~~~t~~~G~~vtL~C~~~~~~~~---~~i~WyrQ~   39 (114)
T d1akjd_           3 FRVSPLDRTWNLGETVELKCQVLLSNPT---SGCSWLFQP   39 (114)
T ss_dssp             EEEECCSCCCCTTCCEEEEEEECCSSCC---SCEEEEEEC
T ss_pred             eeECCCcEeccCCCcEEEEEEeCCCcCC---CCEEEEEEC
Confidence            3578999999999999999987644322   347999975

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=95.51  E-value=0.0059  Score=36.95  Aligned_cols=37  Identities=19%  Similarity=0.135  Sum_probs=28.3

Q ss_pred             CCCCcceEEeecCCeEEEeeecCCC-CCCCCceEEEeeecc
Q psy531           36 DISNAVHITALLGESVVFNCGVDFP-GDTPVPYVLQWEKKI   75 (80)
Q Consensus        36 ~~~~P~~ltA~vGe~VVlnCdvdfP-~~~PiPYVvqW~KdG   75 (80)
                      ..|.|..++++.|++|-|+|.+.-. .+.   |.+.|.|+.
T Consensus         3 V~Q~P~s~~~~~G~svtL~C~~s~~~~~~---~~~~Wyrq~   40 (113)
T d1vesa_           3 VDQTPRTATKETGESLTINCVLRDASFEL---KDTGWYRTK   40 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEEESCSSCC---CEEEEEEEE
T ss_pred             eEeeCCEEEEcCCCCEEEEEEECCCcccC---Cccceeeee
Confidence            3578999999999999999987422 222   568999863

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.40  E-value=0.0059  Score=37.17  Aligned_cols=34  Identities=26%  Similarity=0.546  Sum_probs=26.7

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |.|..++++.|++|.|+|...-   ..-.| +.|-|+.
T Consensus         6 QsP~~l~~~~G~svtL~C~~s~---~~~~~-i~WYrQ~   39 (109)
T d1mqkl_           6 QTPVSLSASVGETVTITCRASE---NIYSY-LAWYQQK   39 (109)
T ss_dssp             EECSEEEECTTCCEEEEEEESS---CCTTC-EEEEEEC
T ss_pred             CcCCEEEECCCCCEEEEEEeCC---CcCcc-cceeecc
Confidence            6799999999999999998652   22345 7899964

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.37  E-value=0.0093  Score=35.70  Aligned_cols=35  Identities=11%  Similarity=0.050  Sum_probs=27.8

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |..+.|+.|+.|-|.|.+..+.... =|-+.|.|+.
T Consensus         6 P~~~~~~~g~~v~L~C~~~~~~~~~-~~~v~WyrQ~   40 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSPSHNTD-EVRVTVLRQT   40 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTTC-EEEEEEEEEC
T ss_pred             CCEEEEcCCCcEEEEEECccCCccc-ceeEEEEEeC
Confidence            7889999999999999998764432 3447999974

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.37  E-value=0.0053  Score=36.59  Aligned_cols=34  Identities=24%  Similarity=0.495  Sum_probs=26.5

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      -|.|..+++..||+|.|+|..+-    ...| +.|-|+-
T Consensus         4 tQsP~~l~~~~G~~vtl~C~~s~----~~~~-~~WYrQ~   37 (104)
T d1yqvl1           4 TQSPAIMSASPGEKVTMTCSASS----SVNY-MYWYQQK   37 (104)
T ss_dssp             EEESSEEEECTTCCEEEEEEESS----CCSC-CEEEEEC
T ss_pred             eCcCCeEEECCCCCEEEEEEeCC----CCCc-cEEEEee
Confidence            36799999999999999997542    2345 5899873

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=95.36  E-value=0.009  Score=35.79  Aligned_cols=34  Identities=21%  Similarity=0.520  Sum_probs=26.3

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      -|.|.+++++.|++|-|+|.+....   -+|+ .|-|+
T Consensus         4 ~Q~~~~v~v~~G~svtl~C~~~~~~---~~~~-~Wyrq   37 (115)
T d1i9ea_           4 TQPDARVTVSEGASLQLRCKYSYSA---TPYL-FWYVQ   37 (115)
T ss_dssp             ECCCSEEEEETTSCEEECCEEECSS---CCEE-EEEEE
T ss_pred             EcCCCeEEECCCCCEEEEEEEcCCC---CCCE-EEEEE
Confidence            3678899999999999999976432   2454 79885

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.34  E-value=0.0025  Score=39.18  Aligned_cols=35  Identities=20%  Similarity=0.086  Sum_probs=27.0

Q ss_pred             CCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           36 DISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        36 ~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      .++-|..+++.+||.|.|+|.+.-- .   -+.+.|.|+
T Consensus         4 ~~~~P~~~~~~~G~~vtL~C~~~~~-~---~~~v~Wyrq   38 (122)
T d1nezg_           4 LRIFPKKMDAELGQKVDLVCEVLGS-V---SQGCSWLFQ   38 (122)
T ss_dssp             EEEESSCEEECTTCCEEEEEEEESC-C---SSCEEEEEE
T ss_pred             eEEcCCEEEECCCCCEEEEEEEcCc-c---CCCEEEEEE
Confidence            3567999999999999999987432 1   234799885

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.30  E-value=0.0066  Score=37.11  Aligned_cols=35  Identities=23%  Similarity=0.388  Sum_probs=26.5

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      -|.|..+++..|++|-|+|...-   .. -+-+.|-|+.
T Consensus         5 tQ~P~s~~~~~G~svtl~C~~s~---~~-~~~~~Wyrq~   39 (107)
T d1c5cl1           5 TQSPSSLSASLGERVSLTCRTSQ---EI-SGYLSWLQQK   39 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESS---CC-TTCEEEEEEC
T ss_pred             EccCCEEEECCCCCEEEEEEeCC---CC-CCCEEEEEcC
Confidence            36789999999999999997542   22 2338999863

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.28  E-value=0.0024  Score=36.97  Aligned_cols=35  Identities=29%  Similarity=0.375  Sum_probs=27.0

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      |+..++..|+.|.|.|.+.   +.|+|-.+.|.|++..
T Consensus        13 ~~~~~~~~G~~~~l~C~v~---~~~p~~~v~W~~~~~~   47 (115)
T d2crya1          13 TQTQHALHGEKGQIKCFIR---STPPPDRIAWSWKENV   47 (115)
T ss_dssp             ECCCCCCTTSCCCCCEEEC---CSSCCSEEEEESSSCE
T ss_pred             CCCEEEecCCEEEEEEEee---cCCCeeEEEEeeeeee
Confidence            4456689999999999986   4455556899998764

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.26  E-value=0.014  Score=34.76  Aligned_cols=35  Identities=23%  Similarity=0.433  Sum_probs=27.1

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|.|..++.+.|++|.|+|..+-   ..-+| +.|-|+.
T Consensus         4 ~Q~p~s~~~~~G~svtl~C~~s~---~~~~~-~~WYrq~   38 (111)
T d1bd2d1           4 KQNSPSLSVQEGRISILNCDYTN---SMFDY-FLWYKKY   38 (111)
T ss_dssp             ECCCSEEEEETTSCEEEEEEECC---TTCCE-EEEEEEC
T ss_pred             EccCCEEEEcCCCCEEEEEEeCC---CCCCe-EEEEEEC
Confidence            57899999999999999997542   23345 6898863

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.25  E-value=0.012  Score=35.55  Aligned_cols=35  Identities=17%  Similarity=0.337  Sum_probs=26.6

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      -|.|..++++.||+|.|+|...=-   -.-| +.|.|+.
T Consensus         5 tQsP~~ltv~~G~svtl~C~~s~~---~~~~-~~WYrQ~   39 (107)
T d1ospl1           5 SQSSSSFSVSLGDRVTITCKASED---IYSR-LAWYQQK   39 (107)
T ss_dssp             ECCCSEEEECTTCCEEEEEEESSC---CTTC-EEEEEEC
T ss_pred             EeeCCEEEECCCCCEEEEEecCCC---cccc-cEEEEcC
Confidence            378999999999999999975421   1224 6899973

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=95.22  E-value=0.0069  Score=36.63  Aligned_cols=37  Identities=16%  Similarity=0.279  Sum_probs=26.4

Q ss_pred             CCcceEEeecCCeEEEeeecCCCC-CCCCceEEEeeecc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPG-DTPVPYVLQWEKKI   75 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~-~~PiPYVvqW~KdG   75 (80)
                      |.|..+++.+||+|-|+|.+.-.. ..-. +-+.|-|+.
T Consensus         6 QsP~~l~v~~G~svtl~C~~s~s~~~~~~-~~~~WYrq~   43 (111)
T d1j05a_           6 QSPASLAVSLGQRATMSCRAGESVDIFGV-GFLHWYQQK   43 (111)
T ss_dssp             EECSEEECCTTSCEEEEEEESSCCBSSSC-BCEEEEEEC
T ss_pred             ccCCEEEECCCCCEEEEEEeccCCccCCc-eeEEEEEcc
Confidence            679999999999999999764221 1112 338898873

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.20  E-value=0.0089  Score=36.34  Aligned_cols=34  Identities=18%  Similarity=0.310  Sum_probs=26.9

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|.|.+++++.|++|-|+|..+--    . +-+.|-|+.
T Consensus         4 ~Q~P~~~~~~~G~svtl~C~~s~~----~-~~~~WYrQ~   37 (115)
T d1ogad1           4 EQSPQFLSIQEGENLTVYCNSSSV----F-SSLQWYRQE   37 (115)
T ss_dssp             EEECSEEEEETTCCEEEEEECSSC----C-SCEEEEEEC
T ss_pred             EeCCCeEEECCCCCEEEEEEECCC----C-ceEEEEecC
Confidence            578999999999999999986532    2 348999863

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=95.08  E-value=0.01  Score=36.01  Aligned_cols=37  Identities=16%  Similarity=0.406  Sum_probs=25.5

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      |.|..+++..|++|.|+|...-....---+.+.|-|+
T Consensus         6 QsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ   42 (111)
T d2gsia1           6 QSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQ   42 (111)
T ss_dssp             EECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEE
T ss_pred             eeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEE
Confidence            6789999999999999996542211111123789886

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.98  E-value=0.013  Score=34.82  Aligned_cols=34  Identities=21%  Similarity=0.416  Sum_probs=26.5

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |.|..++++.||+|-|+|...--.   -.| +.|-|+.
T Consensus         6 QsP~~l~v~~G~svtl~C~~s~~~---~~~-~~WYrq~   39 (107)
T d1kcvl1           6 QSPKSMGMSVGEAVTLNCKASENV---GTY-VSWYQQK   39 (107)
T ss_dssp             ESCSEEEEETTCCEEEEEEESSCC---TTC-EEEEEEC
T ss_pred             CcCCEEeECCCCCEEEEEEecCCc---CCc-eEEEEcc
Confidence            689999999999999999865321   234 8999873

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.95  E-value=0.019  Score=34.28  Aligned_cols=33  Identities=15%  Similarity=0.353  Sum_probs=24.3

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |.-+++..|++|.|+|.++--  ..-+| +.|.|+.
T Consensus         5 P~svsv~~G~~vtl~C~~s~~--~~~~~-l~WYrq~   37 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTI--SGNEY-VYWYRQI   37 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTC--CTTEE-EEEEEEC
T ss_pred             CCEEEECCCCCEEEEEEEcCC--CCCCe-EEEEEEC
Confidence            567999999999999986532  22234 7899863

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=94.94  E-value=0.0087  Score=35.96  Aligned_cols=34  Identities=12%  Similarity=0.281  Sum_probs=27.0

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|.|..++.+.|++|-|+|..+.  +  ..| +.|-|+.
T Consensus         5 ~Q~P~~~~v~~G~~vtl~C~~~~--~--~~~-~~WYrQ~   38 (113)
T d1h5ba_           5 EQSPSALSLHEGTDSALRCNFTT--T--MRS-VQWFRQN   38 (113)
T ss_dssp             EEECSEEEEETTCCEEEEEEESS--C--CSE-EEEEEEC
T ss_pred             EECCCEEEEcCCCCEEEEEEEec--C--Ccc-ceEEEee
Confidence            57899999999999999998653  2  234 7899863

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=94.94  E-value=0.0056  Score=36.86  Aligned_cols=38  Identities=18%  Similarity=0.453  Sum_probs=27.0

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +.++...|+..|+.|.|.|.+.-  |.|.|- +.|.|+|..
T Consensus         6 P~~~~~~t~~EG~~~~L~C~v~~--G~P~p~-v~W~k~~~~   43 (111)
T d1biha2           6 PAKTHEKTPIEGRPFQLDCVLPN--AYPKPL-ITWKKRLSG   43 (111)
T ss_dssp             CCEEEEECCBTTEEEEECCCCCE--EESCCE-EEEEEEETT
T ss_pred             CCccccccccCCCeEEEEEEccc--CCCCCE-EEEEeCCcc
Confidence            44555678999999999998621  334443 679998755

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.93  E-value=0.01  Score=35.67  Aligned_cols=34  Identities=21%  Similarity=0.424  Sum_probs=26.6

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      -|.|..+++..||+|-|+|...-..   -.| +.|-|+
T Consensus         4 tQsP~~l~~~~G~svtl~C~~s~~~---~~~-~~WYrq   37 (106)
T d1a0ql1           4 TQSPSSLSASLGGKVTITCKASQDI---KKY-IGWYQH   37 (106)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCC---TTC-EEEEEE
T ss_pred             ECcCCEEEECCCCCEEEEEEcCCCC---CCC-eEEEEC
Confidence            4679999999999999999865332   224 899987

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.92  E-value=0.014  Score=34.95  Aligned_cols=34  Identities=24%  Similarity=0.454  Sum_probs=26.4

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      .|.|..++++.|++|.|+|...-. +  -+| +.|.|+
T Consensus         4 tQ~p~~v~~~~G~~vtl~C~~s~~-~--~~~-i~WYrQ   37 (115)
T d1j8hd1           4 TQLGSHVSVSEGALVLLRCNYSSS-V--PPY-LFWYVQ   37 (115)
T ss_dssp             ECSCSEEEEETTSCEEECCEEECS-S--CCE-EEEEEE
T ss_pred             EcCCCeEEEcCCCCEEEEEEeCCC-C--cee-EEEEEc
Confidence            467899999999999999986532 1  124 789986

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=94.92  E-value=0.0082  Score=35.81  Aligned_cols=34  Identities=18%  Similarity=0.380  Sum_probs=26.9

Q ss_pred             CCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           36 DISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        36 ~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      ..|.|.+++++.||+|-|+|..+  .+  .+| +.|-|+
T Consensus         4 V~Q~P~~~~~~~G~~vtl~C~~s--~~--~~~-~~WYrQ   37 (110)
T d2aq2a1           4 VTQSPRNKVAVTGEKVTLSCQQT--NN--HNN-MYWYRQ   37 (110)
T ss_dssp             EEEECSEEEECTTCCEEEEEEES--SC--CSE-EEEEEE
T ss_pred             EEEeCCeEEEcCCCCEEEEEEEC--CC--cCc-EEEEEE
Confidence            35789999999999999999754  23  345 689986

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=94.82  E-value=0.0094  Score=35.65  Aligned_cols=36  Identities=17%  Similarity=0.298  Sum_probs=28.0

Q ss_pred             CCCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           35 PDISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        35 g~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      ...|.|.++..+.|++|-|+|...-.  . -.| +.|-|+
T Consensus         3 ~V~Q~P~~~~~~~G~~vtL~C~~~~~--~-~~~-~~WYrQ   38 (112)
T d1fo0b_           3 LLEQNPRWRLVPRGQAVNLRCILKNS--Q-YPW-MSWYQQ   38 (112)
T ss_dssp             SEEEECSEEECCTTCCEEEEEEESCT--T-CCE-EEEEEE
T ss_pred             eEEeCCCeEEECCCCCEEEEEEEecC--C-CCc-EEEEeE
Confidence            34688999999999999999986432  2 235 789998

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.74  E-value=0.013  Score=35.73  Aligned_cols=34  Identities=21%  Similarity=0.384  Sum_probs=25.9

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      .|.|.+++++.||+|-|+|...-.   .-. .+.|-|+
T Consensus         5 tQ~P~~l~~~~G~svtL~C~~s~~---~~~-~~~WYrq   38 (108)
T d1jhll_           5 TQSPSYLVASPGETITINCRASKS---ISK-SLAWYQE   38 (108)
T ss_dssp             EEECSEEEECTTSCEEEEEEESSC---CTT-CEEEEEE
T ss_pred             EccCCeEEecCCCCEEEEEEccCC---cCC-ceEEEEc
Confidence            478999999999999999986522   122 3788776

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=94.64  E-value=0.012  Score=35.46  Aligned_cols=36  Identities=17%  Similarity=0.255  Sum_probs=27.9

Q ss_pred             CCCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           35 PDISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        35 g~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      +..|.|.+++++.|+.|.|+|..+  .+.  .| +.|-|+-
T Consensus         3 ~VtQ~P~~~~~~~G~~v~l~C~~~--~~~--~~-~~WYrQ~   38 (113)
T d1nfdb1           3 GVVQSPRHIIKEKGGRSVLTCIPI--SGH--SN-VVWYQQT   38 (113)
T ss_dssp             SCEEECSEEEEETTCCCEEEEECC--TTC--CE-EEEEEBC
T ss_pred             CEEEcCCEEEEeCCCCEEEEEEeC--CCC--CE-EEEEEEC
Confidence            456889999999999999999743  232  34 7999874

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=94.58  E-value=0.015  Score=35.50  Aligned_cols=37  Identities=22%  Similarity=0.267  Sum_probs=27.1

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|.|..++++.|++|-|+|.+.-. .....| +.|.|+.
T Consensus         3 ~Q~P~s~t~~~G~svtl~C~~s~~-s~~~~~-i~WYrq~   39 (112)
T d1sq2n_           3 DQTPRSVTKETGESLTINCVLRDA-SYALGS-TCWYRKK   39 (112)
T ss_dssp             EEECSEEEECTTCCEEEEEEECSC-SSCCCC-EEEEEEE
T ss_pred             EecCCEEEEcCCCCEEEEEEECCC-cccCCc-eEEEEee
Confidence            578999999999999999977422 112233 6899863

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=94.52  E-value=0.031  Score=33.37  Aligned_cols=37  Identities=11%  Similarity=0.204  Sum_probs=25.0

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      -| |.-++++.|++|.|+|...--....- +-+.|-|+.
T Consensus         5 tQ-P~s~~~~~G~svtl~C~~~~~~~~~~-~~i~WYrQ~   41 (112)
T d1lgva1           5 TQ-PASVSGSPGQSITVSCTGVSSIVGSY-NLVSWYQQH   41 (112)
T ss_dssp             BC-CSEEEECTTCCEEEEEECCCCSSSCC-CCEEEEEEC
T ss_pred             cC-CCcEEECCCCCEEEEEEeCCCCCCCC-Ccceeeeee
Confidence            45 88899999999999998542211111 236898863

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.52  E-value=0.011  Score=35.40  Aligned_cols=33  Identities=18%  Similarity=0.455  Sum_probs=25.6

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      |.|..++++.|++|.|+|...-.   -. +.+.|-|+
T Consensus         8 QsP~~l~~~~G~svtL~C~~s~~---~~-~~~~WYrq   40 (109)
T d1bwwa_           8 QSPSSLSASVGDRVTITCQASQD---II-KYLNWYQQ   40 (109)
T ss_dssp             EECSEEEECTTCCEEEEEEESSC---CT-TCEEEEEE
T ss_pred             eeCCEEEECCCCCEEEEEEecCC---CC-CcceEeee
Confidence            57899999999999999987532   12 34689886

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=94.46  E-value=0.0072  Score=36.08  Aligned_cols=34  Identities=9%  Similarity=0.267  Sum_probs=26.8

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|.|.++.++.|++|.|+|..+.  +.  .| +.|-|+.
T Consensus         2 ~QsP~~~~~~~G~svtL~C~~~~--~~--~~-~~WYrQ~   35 (112)
T d2cdeb1           2 YQTPRYLVIGTGKKITLECSQTM--GH--DK-MYWYQQD   35 (112)
T ss_dssp             EEECSEEEEETTCCBCCEEEETT--CC--SE-EEEEEEC
T ss_pred             EECCCEEEECCCCCEEEEEEEeC--Cc--cc-EEEEEEc
Confidence            36799999999999999998653  32  34 7899874

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.38  E-value=0.0054  Score=36.17  Aligned_cols=36  Identities=17%  Similarity=0.332  Sum_probs=25.0

Q ss_pred             cceEEeecCCeEEEeeecCCC-CCCCCceEEEeeecccc
Q psy531           40 AVHITALLGESVVFNCGVDFP-GDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP-~~~PiPYVvqW~KdG~~   77 (80)
                      |.-++.+.|...-+.| +++. .|.|.|. ++|.|+|++
T Consensus         4 p~~~~~~~g~~~~~~c-i~~~v~G~P~P~-v~W~~ng~~   40 (107)
T d1he7a_           4 PASVQLHTAVEMHHWC-IPFSVDGQPAPS-LRWLFNGSV   40 (107)
T ss_dssp             CCCCCCCCCCCCCEEE-EEEEECCSSCCE-EEEEETTEE
T ss_pred             CCEeEECCCeEEEEEE-EEEEEEEecCCe-EEEEEeeeE
Confidence            4445566666666666 4444 6999998 699999875

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.36  E-value=0.013  Score=35.02  Aligned_cols=35  Identities=17%  Similarity=0.329  Sum_probs=26.8

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      -|.|..++++.|++|.|+|...-. ..   +.+.|.|+.
T Consensus         5 tQ~p~~l~v~~G~~vtL~C~~~~~-~~---~~~~WYrq~   39 (107)
T d1j1pl_           5 TQSPATLSVTPGNSVSLSCRASQS-IG---NNLHWYQQK   39 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSC-CT---TCEEEEEEC
T ss_pred             ECcCCeEEECCCCCEEEEEEecCC-CC---cceEEEEeC
Confidence            367999999999999999976432 12   247899874

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.15  E-value=0.022  Score=32.16  Aligned_cols=35  Identities=11%  Similarity=0.084  Sum_probs=24.6

Q ss_pred             CcceEEeecCCeEEEeeecCCCCCCCCceEE--Eeeeccc
Q psy531           39 NAVHITALLGESVVFNCGVDFPGDTPVPYVL--QWEKKIV   76 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVv--qW~KdG~   76 (80)
                      ++..+++..|+.|.|.|.+.   |.|.|-+.  -|.+++.
T Consensus         7 ~~~~~~v~~G~~v~l~C~~~---g~p~p~~~~~~~~~~~~   43 (96)
T d2c9aa1           7 RIQNVEVNAGQFATFQCSAI---GRTVAGDRLWLQGIDVR   43 (96)
T ss_dssp             CCCCEEECSSSCEEEEEEEE---SCCCSSCEEEEEETTBC
T ss_pred             ccCCEEEeCCCEEEEEEEEe---ecCCCcEEEEEeeeeee
Confidence            46788999999999999986   55545333  3444444

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=94.09  E-value=0.021  Score=34.00  Aligned_cols=35  Identities=9%  Similarity=0.136  Sum_probs=27.1

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .|.|..++++.|++|.|+|...-. +   -+.+.|-|+-
T Consensus         4 tQ~p~~~~~~~G~~vtl~C~~~~~-~---~~~~~WYrQ~   38 (110)
T d1ac6a_           4 TQTEGQVALSEEDFLTIHCNYSAS-G---YPALFWYVQY   38 (110)
T ss_dssp             EECCSEEEEETTEEEEECEEEECS-S---CCEEEEEEEC
T ss_pred             EeCCCeEEECCCCCEEEEEEecCC-C---CcceEEEEcC
Confidence            478899999999999999986432 1   2348899873

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.96  E-value=0.023  Score=33.51  Aligned_cols=32  Identities=13%  Similarity=0.204  Sum_probs=24.9

Q ss_pred             EeecCCeEEEeeecCCCCCCCCce-EEEeeecccc
Q psy531           44 TALLGESVVFNCGVDFPGDTPVPY-VLQWEKKIVK   77 (80)
Q Consensus        44 tA~vGe~VVlnCdvdfP~~~PiPY-VvqW~KdG~~   77 (80)
                      +.++|+.|.|.|.+.-  +.|.|- -+.|.|++..
T Consensus        15 ~v~~G~~~~L~C~v~g--~~P~p~~~v~W~~~~~~   47 (103)
T d1iama1          15 WQPVGKQLTLRCQVEG--GAPRAQLTVVLLRGEKE   47 (103)
T ss_dssp             EECTTSEEEEEEEEEC--CBCGGGEEEEEEETTEE
T ss_pred             eEeCCCEEEEEEEecC--CCCCCceEEEEcccccc
Confidence            4578999999999973  456664 4899998764

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=93.87  E-value=0.018  Score=34.51  Aligned_cols=34  Identities=15%  Similarity=0.388  Sum_probs=26.0

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |.|..++++.||+|.|+|...=.   - .+.+.|.|+.
T Consensus         5 Q~P~sl~~~~G~svtL~C~~~~~---~-~~~~~WYrq~   38 (106)
T d1op3k1           5 QSPSTLSASVGDTITITCRASQS---I-ETWLAWYQQK   38 (106)
T ss_dssp             EECSEEEECTTCEEEEEEEESSC---C-TTCEEEEEEC
T ss_pred             CcCCeEEECCCCCEEEEEEeCCC---C-CCcEEEEecC
Confidence            67999999999999999975422   1 2337899874

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.75  E-value=0.018  Score=35.61  Aligned_cols=35  Identities=17%  Similarity=0.379  Sum_probs=26.3

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      -|.|..+++++|++|.|+|...-.    .-+-+.|-|+.
T Consensus         5 tQ~P~sv~~~~G~svtl~C~~s~~----~~~~i~WYrQ~   39 (119)
T d1f3rb2           5 TQSPSLLSASVGDRVTLSCKGSQN----INNYLAWYQQK   39 (119)
T ss_dssp             CEETSEECCCTTCCEEEEEECSSC----CBTCEEEEEEC
T ss_pred             EccCCEEEECCCCCEEEEEEeCCC----CcceeEEeeee
Confidence            467899999999999999975421    12337899873

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=93.67  E-value=0.024  Score=34.69  Aligned_cols=34  Identities=15%  Similarity=0.435  Sum_probs=26.2

Q ss_pred             CCcceEEeecCCeEEEeeecC-CCCCCCCceEEEeeec
Q psy531           38 SNAVHITALLGESVVFNCGVD-FPGDTPVPYVLQWEKK   74 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvd-fP~~~PiPYVvqW~Kd   74 (80)
                      ++|.-+++++|++|-|+|.+. ...+.   |-+.|-|+
T Consensus         6 ~~~~sv~v~~G~~vtL~C~~s~~~~~~---~~~~WyrQ   40 (120)
T d1hxma1           6 PEHQTVPVSIGVPATLRCSMKGEAIGN---YYINWYRK   40 (120)
T ss_dssp             ESCSEEEEETTCCEEEEEEECSSCGGG---SEEEEEEE
T ss_pred             ccCCCEEECCCCCEEEEEEEeccCccC---CcCeEEEc
Confidence            567788899999999999886 22233   45899986

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=93.67  E-value=0.021  Score=34.50  Aligned_cols=38  Identities=16%  Similarity=0.298  Sum_probs=25.9

Q ss_pred             CCCcceEEeecCCeEEEeeecCC--CCCCCCceEEEeeec
Q psy531           37 ISNAVHITALLGESVVFNCGVDF--PGDTPVPYVLQWEKK   74 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdf--P~~~PiPYVvqW~Kd   74 (80)
                      .|.|..+++..|++|.|+|...-  ....--=+.+.|-|+
T Consensus         5 tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq   44 (113)
T d1q9ra1           5 SQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQ   44 (113)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEE
T ss_pred             EccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEec
Confidence            36799999999999999996541  111111134888886

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=93.65  E-value=0.029  Score=33.75  Aligned_cols=35  Identities=14%  Similarity=0.341  Sum_probs=26.5

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      -|.|..+++++|++|-|+|...  .+. -.| +.|-|+-
T Consensus         5 tQ~p~~l~~~~G~svtl~C~~s--~~~-~~~-~~WYrQ~   39 (107)
T d1mexl1           5 TQSQKFMSTSLGNRVSVTCKAS--QNV-GTN-VAWFQQK   39 (107)
T ss_dssp             ECCCSEEEECTTSCEEEEEEES--SCC-TTC-EEEEEEC
T ss_pred             EcCCCeEEECCCCCEEEEEEeC--CCC-CCc-eEEEecc
Confidence            4789999999999999999753  222 235 6899873

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=93.60  E-value=0.028  Score=33.90  Aligned_cols=34  Identities=15%  Similarity=0.250  Sum_probs=26.5

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      .|.|..++++.||+|-|.|...--   .- |.+.|-|+
T Consensus         5 ~Q~P~~~~~~~G~~v~L~C~~~~~---~~-~~~~WYrQ   38 (118)
T d2ij0c1           5 SQHPSMVIVKSGTSVKIECRSLDT---NI-HTMFWYRQ   38 (118)
T ss_dssp             EEECSEEEECTTCCEEEEEEECSS---CC-SEEEEEEE
T ss_pred             EEcCCeEEEcCCCCEEEEEEEcCC---cc-cEEEEEEE
Confidence            578899999999999999985322   12 45889987

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=93.49  E-value=0.018  Score=34.59  Aligned_cols=33  Identities=15%  Similarity=0.314  Sum_probs=25.1

Q ss_pred             CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      |.|..++++.||+|-|+|...-..    -+.+.|.|+
T Consensus         6 QsP~slsv~~G~svtl~C~~s~~~----~~~~~WYrQ   38 (106)
T d1i8ka_           6 QSPASLSVATGEKVTIRCMTSTDI----DDDMNWYQQ   38 (106)
T ss_dssp             EECSEEECCTTCCEEEEEEESSCC----TTCEEEEEE
T ss_pred             eeCCEEEECCCCCEEEEEEeCCCC----CccEEEEeC
Confidence            678999999999999999754221    123799886

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=93.29  E-value=0.01  Score=35.78  Aligned_cols=35  Identities=23%  Similarity=0.432  Sum_probs=26.0

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      -|.|..+++++||+|-|+|..+-   ..- +-+.|.|+.
T Consensus         5 tQsP~s~~~~~G~~vtl~C~~s~---~~~-~~~~WYrq~   39 (107)
T d3cx5k1           5 TQTPVSLAASLGDRVTISCRASQ---DIN-NFLNWYQQK   39 (107)
T ss_dssp             EEESTTCCBCSSSCCEEEEEESS---CCT-TCEEEEEEC
T ss_pred             ECcCCEEEECCCCCEEEEEEcCC---CcC-CCeEEEEcC
Confidence            36789999999999999997542   212 237898873

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.28  E-value=0.029  Score=33.33  Aligned_cols=34  Identities=15%  Similarity=0.265  Sum_probs=24.8

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |+.++++.|++|.|.|...-.  .--=|-++|.|+.
T Consensus         7 P~s~sv~~G~svtL~C~~s~~--~~~~~~i~WyrQ~   40 (111)
T d1cd0a_           7 PHSVSESPGKTVTISCTRSSG--NIDSNYVQWYQQR   40 (111)
T ss_dssp             CSEEEECTTSCEEEEEEESSS--CGGGSCCEEEEEC
T ss_pred             CCeeEECCCCCEEEEEEECCC--CccCceEEEeeec
Confidence            778999999999999986421  1111458999873

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=93.04  E-value=0.038  Score=32.46  Aligned_cols=32  Identities=13%  Similarity=0.324  Sum_probs=23.7

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |..++++.|++|.|+|...-.   . -+-+.|-|+.
T Consensus         5 p~sl~~~~G~svtl~C~~~~~---~-~~~~~WYrQ~   36 (103)
T d8faba1           5 PPSVSVSPGQTARITCSANAL---P-NQYAYWYQQK   36 (103)
T ss_dssp             CSEEEECTTSCEEEEEECTTG---G-GSCCEEEEEC
T ss_pred             CCeEEECCCCCEEEEEEeCCC---C-CCCEEEEEcc
Confidence            558999999999999975432   1 2347899873

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.04  E-value=0.043  Score=32.18  Aligned_cols=32  Identities=19%  Similarity=0.241  Sum_probs=24.2

Q ss_pred             EeecCCeEEEeeecCCCCCCCC-ceEEEeeecccc
Q psy531           44 TALLGESVVFNCGVDFPGDTPV-PYVLQWEKKIVK   77 (80)
Q Consensus        44 tA~vGe~VVlnCdvdfP~~~Pi-PYVvqW~KdG~~   77 (80)
                      ...+|+.|.|.|.+.=  +.|. +--+.|.|+|..
T Consensus        13 ~v~~G~~v~l~C~v~g--~~p~p~~~i~W~~~~~~   45 (106)
T d1zxqa1          13 LVAVGKSFTIECRVPT--VEPLDSLTLFLFRGNET   45 (106)
T ss_dssp             EECTTSEEEEEEEECS--CBCGGGEEEEEEETTEE
T ss_pred             EEeCCCEEEEEEEEeC--cccCCCceEEEEcCCEE
Confidence            4679999999999962  2333 356999999864

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=92.80  E-value=0.073  Score=32.00  Aligned_cols=38  Identities=21%  Similarity=0.202  Sum_probs=26.0

Q ss_pred             CCcceEEeecCCeEEEeeecCCC-CCCCCceEEEeeecc
Q psy531           38 SNAVHITALLGESVVFNCGVDFP-GDTPVPYVLQWEKKI   75 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdfP-~~~PiPYVvqW~KdG   75 (80)
                      |.|..+++..|++|-|+|...=- ....--|-+.|-|+.
T Consensus         6 Q~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~   44 (112)
T d1mjul1           6 QAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQR   44 (112)
T ss_dssp             CCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEEC
T ss_pred             ecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECC
Confidence            67889999999999999975311 011112457897763

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.60  E-value=0.073  Score=31.51  Aligned_cols=32  Identities=16%  Similarity=0.323  Sum_probs=23.7

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |..++++.|++|.|+|...--   .- +-+.|-|+.
T Consensus         7 p~s~~~~~G~svtL~C~~s~~---~~-~~~~WYrq~   38 (106)
T d1lk3l1           7 PPALTVSPGEKLTISCKASES---VT-SRMHWYQQK   38 (106)
T ss_dssp             CSEEEECTTSCEEEEEEESSC---CT-TCEEEEEEC
T ss_pred             CCeEEECCCCCEEEEEEeCCC---CC-ccEEEEecC
Confidence            457999999999999987632   12 236898873

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=92.43  E-value=0.05  Score=32.51  Aligned_cols=34  Identities=24%  Similarity=0.362  Sum_probs=25.4

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      -|.|..+++.+|++|-|+|...--   .- +.+.|-|+
T Consensus         5 tQ~P~sl~~~~G~svtl~C~~s~~---~~-~~~~WYrq   38 (107)
T d1d5il1           5 TQSPSSMYASLGERVTITCKASQD---IN-SYLSWFQQ   38 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSC---CT-TCEEEEEE
T ss_pred             EeeCCEEEECCCCCEEEEEEcCCC---CC-CccceeEe
Confidence            367999999999999999975421   12 23689886

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=92.12  E-value=0.068  Score=32.28  Aligned_cols=38  Identities=13%  Similarity=0.256  Sum_probs=26.8

Q ss_pred             CCCcceEEeecCCeEEEeeecCCC-CCCCCceEEEeeec
Q psy531           37 ISNAVHITALLGESVVFNCGVDFP-GDTPVPYVLQWEKK   74 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP-~~~PiPYVvqW~Kd   74 (80)
                      -|.|..++++.|++|-|+|...=- ...---|.+.|-|+
T Consensus         6 tQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ   44 (113)
T d1n4xl_           6 TQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQ   44 (113)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEE
T ss_pred             eCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEec
Confidence            467899999999999999986421 11111255888876

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.67  E-value=0.072  Score=32.37  Aligned_cols=35  Identities=17%  Similarity=0.329  Sum_probs=24.8

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |.-++++.|+.|.|+|.+.-.. ...-+.+.|.|+.
T Consensus         7 ~~slsvs~G~tvtl~C~~s~~~-~~~~~~v~WyrQ~   41 (110)
T d1oaql_           7 ESALTTSPGETVTLTCRSSTGA-VTTSNYANWVQEK   41 (110)
T ss_dssp             CSEEEECTTCEEEEEEEETTBC-CCGGGCCEEEEEE
T ss_pred             CCCEEeCCCCCEEEEEEEcCCC-CcceeeeEEEEee
Confidence            3468999999999999886431 1113558898864

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=91.51  E-value=0.089  Score=31.86  Aligned_cols=36  Identities=14%  Similarity=0.307  Sum_probs=25.9

Q ss_pred             CCcceEEeecCCeEEEeeecCC--CCCCCCceEEEeeec
Q psy531           38 SNAVHITALLGESVVFNCGVDF--PGDTPVPYVLQWEKK   74 (80)
Q Consensus        38 ~~P~~ltA~vGe~VVlnCdvdf--P~~~PiPYVvqW~Kd   74 (80)
                      |.|..+++++|++|-|+|...-  ..+..- |-++|-|+
T Consensus         6 QsP~sls~~~G~svtl~C~~s~~~~~~~~~-~~~~WYrQ   43 (112)
T d1ncwl1           6 QSPKTISVTIGQPASISCKSSQRLLNSNGK-TFLNWLLQ   43 (112)
T ss_dssp             EECSEEEEETTSCEEEEEEESSCCBCTTSC-BCEEEEEE
T ss_pred             CcCCEEEECCCCCEEEEEEECcccccCCCC-cccEEEEc
Confidence            6789999999999999997542  122222 34888876

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=91.29  E-value=0.13  Score=30.49  Aligned_cols=32  Identities=16%  Similarity=0.319  Sum_probs=24.3

Q ss_pred             cceEEeecCCeEEEeeecCCC-CCCCCceEEEeeec
Q psy531           40 AVHITALLGESVVFNCGVDFP-GDTPVPYVLQWEKK   74 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP-~~~PiPYVvqW~Kd   74 (80)
                      |..++++.|++|-|+|.+.-. .+.   |.+.|-|+
T Consensus         7 p~s~~v~~G~svtl~C~~s~~~~~~---~~~~WYrq   39 (111)
T d1rzfl1           7 PPSVSAAPGQKVTISCSGSSSNIGN---NDVSWYQQ   39 (111)
T ss_dssp             CSEEEECTTSCEEEEEECCCCCCCT---SCEEEEEE
T ss_pred             CcceEeCCCCCEEEEEEECCcCCcC---Ccccceee
Confidence            457999999999999987543 223   44899887

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.73  E-value=0.064  Score=31.83  Aligned_cols=29  Identities=14%  Similarity=0.126  Sum_probs=21.0

Q ss_pred             EeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           44 TALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        44 tA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      .|..|++|.|.|+. .|. .  +.-+.|.|...
T Consensus        10 ~v~~G~~V~L~c~~-~p~-~--~~~~~W~k~~~   38 (107)
T d1l6za1          10 QVAEDNNVLLLVHN-LPL-A--LGAFAWYKGNT   38 (107)
T ss_dssp             SCCTTCCEEEEEES-CCT-T--CSEEEEEESSC
T ss_pred             cccCCCCEEEEecC-CCC-C--ceEEEEEeCcc
Confidence            37799999999984 463 2  34579998643

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.45  E-value=0.15  Score=28.20  Aligned_cols=30  Identities=20%  Similarity=0.179  Sum_probs=23.4

Q ss_pred             EeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           44 TALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        44 tA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      +...|++|.|.|.++   |.|.|- ++|.|++..
T Consensus        10 ~v~~G~~~~L~C~~~---g~p~P~-i~W~~~~~~   39 (84)
T d2nxyb2          10 HLLQGQSLTLTLESP---PGSSPS-VQCRSPRGK   39 (84)
T ss_dssp             CEETTCCEEEEEECC---TTCCCE-EEEECTTCC
T ss_pred             EEECCCeEEEEEEeE---cCCchh-eEEEeeccc
Confidence            467899999999874   666665 679998754

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=89.36  E-value=0.12  Score=31.67  Aligned_cols=37  Identities=14%  Similarity=0.217  Sum_probs=26.6

Q ss_pred             CCCCcceEEeecCCeEEEeeecCCC-CCCCCceEEEeeecc
Q psy531           36 DISNAVHITALLGESVVFNCGVDFP-GDTPVPYVLQWEKKI   75 (80)
Q Consensus        36 ~~~~P~~ltA~vGe~VVlnCdvdfP-~~~PiPYVvqW~KdG   75 (80)
                      +.|.|..++...|++|.|+|.+.-- .+.   |.+.|-|+.
T Consensus         4 l~Q~~~sv~~~~G~svtL~C~~~~~~~~~---~~i~WYrQ~   41 (120)
T d1ypzf1           4 LEQPEISISRPRDETAQISCKVFIESFRS---VTIHWYRQK   41 (120)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECCGGGGG---CCEEEEEEC
T ss_pred             eEcCCCEEEecCCCcEEEEEEEecccccC---CcccEEEeC
Confidence            3567778999999999999975321 122   447898863

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.96  E-value=0.046  Score=31.41  Aligned_cols=27  Identities=22%  Similarity=0.306  Sum_probs=19.5

Q ss_pred             cCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           47 LGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        47 vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .+....+.|.++   |.|.| -++|.|+|++
T Consensus        16 ~~~~~~i~~~v~---G~P~P-~v~W~~n~~~   42 (105)
T d1wwca_          16 LRLEHCIEFVVR---GNPPP-TLHWLHNGQP   42 (105)
T ss_dssp             CCCEEEEEEEEE---CSSCC-EEEEEETTEE
T ss_pred             EEEEEEEEEEEE---EeCCC-eEEEEeCccc
Confidence            344455667774   88888 5999999875

>d2a7ya1 b.34.6.3 (A:1-80) Hypothetical protein Rv2302/MT2359 {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cell growth inhibitor/plasmid maintenance toxic component
family: Rv2302-like
domain: Hypothetical protein Rv2302/MT2359
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.10  E-value=0.11  Score=32.37  Aligned_cols=21  Identities=24%  Similarity=0.430  Sum_probs=14.9

Q ss_pred             ecCCCCCCCCceEEEeeecccc
Q psy531           56 GVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        56 dvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      .|--+.|. +||+|.|..||..
T Consensus        27 EVrg~dG~-PPY~VRw~ddGHe   47 (80)
T d2a7ya1          27 EVRSADGS-PPYVVRWLVNGHE   47 (80)
T ss_dssp             ECSCSSSC-SCEEEEETTTTEE
T ss_pred             EEECCCCC-CCEEEEeCCCCcE
Confidence            34555454 6899999888764

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=87.99  E-value=0.19  Score=30.34  Aligned_cols=32  Identities=13%  Similarity=0.348  Sum_probs=23.3

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |.-++++.|++|-|+|...-. +   =|-+.|-|+-
T Consensus         7 p~sl~~~~G~svtl~C~~~~~-~---~~~i~WYrQ~   38 (109)
T d1w72l1           7 PPSVSVAPGQTARITCGGNNI-G---SRSVHWYQQK   38 (109)
T ss_dssp             CSEEEECTTSCEEEEEECTTG-G---GSCCEEEEEC
T ss_pred             CCeEEECCCCCEEEEEEcCCC-C---Ccceeeeecc
Confidence            457999999999999984322 1   1348898873

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=87.91  E-value=0.36  Score=29.21  Aligned_cols=35  Identities=11%  Similarity=0.306  Sum_probs=24.7

Q ss_pred             CCCcceEEeecCCeEEEeeecCCCC-CCCCceEEEeeecc
Q psy531           37 ISNAVHITALLGESVVFNCGVDFPG-DTPVPYVLQWEKKI   75 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvdfP~-~~PiPYVvqW~KdG   75 (80)
                      -|.| -++++.|++|-|+|...-.. +.   |-+.|-|+.
T Consensus         5 tQ~p-s~~v~~G~svtL~C~~s~~~~~~---~~~~WYrQ~   40 (114)
T d2rhea_           5 TQPP-SASGTPGQRVTISCTGSATDIGS---NSVIWYQQV   40 (114)
T ss_dssp             BCCS-EEEECTTCCEEEEEECCTTTTTT---SCEEEEECC
T ss_pred             ccCC-cEEeCCCCCEEEEEEECCccccC---Ccccceeee
Confidence            4555 58899999999999865331 22   346798874

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=87.81  E-value=0.11  Score=31.21  Aligned_cols=32  Identities=19%  Similarity=0.296  Sum_probs=23.5

Q ss_pred             cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |..+++.+|++|.|+|...--    .-+.+.|-|+-
T Consensus         6 P~s~~~~~G~svtl~C~~~~~----~~~~i~WYrQ~   37 (108)
T d1nfde1           6 PSSASVTVGETVKITCSGDQL----PKNFAYWFQQK   37 (108)
T ss_dssp             CSEEEEETTSCCCEEEEETTG----GGSCCEEEEEC
T ss_pred             CCeeEECCCCCEEEEEECCCC----CCccEEEEecc
Confidence            778999999999999965311    11347898873

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.17  E-value=0.22  Score=28.58  Aligned_cols=29  Identities=21%  Similarity=0.206  Sum_probs=23.5

Q ss_pred             eecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531           45 ALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK   77 (80)
Q Consensus        45 A~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~   77 (80)
                      ...++.+.+.|.+.   |.|.|- ++|.|+|.+
T Consensus        13 ~~~~~~~~i~~~v~---G~P~P~-i~W~~~g~~   41 (103)
T d1wwbx_          13 PTSDHHWCIPFTVK---GNPKPA-LQWFYNGAI   41 (103)
T ss_dssp             CCCCCEEEEEEEEE---CSSCCE-EEEEETTEE
T ss_pred             CccceeEEEEEEEE---EeCCCE-EEEEECCEE
Confidence            45678888999884   889987 599999875

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=86.97  E-value=0.33  Score=29.59  Aligned_cols=35  Identities=14%  Similarity=0.276  Sum_probs=25.6

Q ss_pred             CCCcceEEeecCCeEEEeeecC-CCCCCCCceEEEeeec
Q psy531           37 ISNAVHITALLGESVVFNCGVD-FPGDTPVPYVLQWEKK   74 (80)
Q Consensus        37 ~~~P~~ltA~vGe~VVlnCdvd-fP~~~PiPYVvqW~Kd   74 (80)
                      .|.|.-++...|++|-|.|.+. +..+.   |-+.|-|+
T Consensus         5 ~Qp~~s~t~~~g~t~~LsC~~sg~~~s~---~~~~WYrQ   40 (123)
T d1hxmb1           5 EQPQISSTKTLSKTARLECVVSGITISA---TSVYWYRE   40 (123)
T ss_dssp             ECCCSEEEEETTCCEEEEEEEESSCTTT---SCEEEEEE
T ss_pred             ECCCCeEEeCCCCCEEEEEEEcCCCccc---CeEEEEEE
Confidence            4566679899999999999875 44333   23678876

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.48  E-value=0.23  Score=30.26  Aligned_cols=33  Identities=9%  Similarity=0.299  Sum_probs=25.1

Q ss_pred             CcceEEeecCCeEEEeeecC-CCCCCCCceEEEeeec
Q psy531           39 NAVHITALLGESVVFNCGVD-FPGDTPVPYVLQWEKK   74 (80)
Q Consensus        39 ~P~~ltA~vGe~VVlnCdvd-fP~~~PiPYVvqW~Kd   74 (80)
                      |.+.++.+.||+|-|.|.++ +..+.   |.+.|-|+
T Consensus         1 ee~~~~~~eG~svtl~C~ys~~~~~~---~~~~W~rq   34 (110)
T d1u9ka_           1 EEERYDLVEGQTLTVKCPFNIMKYAN---SQKAWQRL   34 (110)
T ss_dssp             CCEEEEECTTCCEEEEEECCHHHHTT---SEEEEEEC
T ss_pred             CCCCCcCCCCCCEEEEEEECCCCccC---CcEEEEEE
Confidence            45778899999999999976 33333   56788885

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.42  E-value=0.25  Score=29.18  Aligned_cols=33  Identities=18%  Similarity=0.179  Sum_probs=23.5

Q ss_pred             eecCCeEEEeeec--CCCC-CCCCceEEEeeeccccc
Q psy531           45 ALLGESVVFNCGV--DFPG-DTPVPYVLQWEKKIVKN   78 (80)
Q Consensus        45 A~vGe~VVlnCdv--dfP~-~~PiPYVvqW~KdG~~~   78 (80)
                      -.+|++..|-|..  +|-. +.|+ --+.|.|+|++-
T Consensus        11 ~~~g~~~~l~Cp~~~~~~~~~~p~-P~i~W~kdg~~l   46 (103)
T d1iray2          11 LPVAGDGGLVCPYMEFFKNENNEL-PKLQWYKDCKPL   46 (103)
T ss_dssp             EESSSCEEEECTTGGGGCBTTTBC-CCCEEEETTEEC
T ss_pred             EecCCCEEEEcCCccccccCCCCC-CEEEEEECCccc
Confidence            5789999999953  2443 4444 458999998763

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.69  E-value=0.19  Score=29.26  Aligned_cols=31  Identities=16%  Similarity=0.114  Sum_probs=23.6

Q ss_pred             eecCCeEEEeeecCCCCCCCCce-EEEeeecccc
Q psy531           45 ALLGESVVFNCGVDFPGDTPVPY-VLQWEKKIVK   77 (80)
Q Consensus        45 A~vGe~VVlnCdvdfP~~~PiPY-VvqW~KdG~~   77 (80)
                      ..+|+.+.|.|.+..  +.|.+. .+.|.|++..
T Consensus        13 l~~G~~~~l~C~v~~--~~P~~~~~i~W~~g~~~   44 (109)
T d1vcaa1          13 LEAGKPITVKCSVAD--VYPFDRLEIDLLKGDHL   44 (109)
T ss_dssp             EETTSCEEEEEEEEE--EBSGGGEEEEEEETTEE
T ss_pred             ccCCCeEEEEeEeCC--cCCCCceEEEEeccCce
Confidence            579999999999953  455443 5899998754

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.60  E-value=0.31  Score=27.90  Aligned_cols=27  Identities=19%  Similarity=-0.053  Sum_probs=20.3

Q ss_pred             eecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531           45 ALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV   76 (80)
Q Consensus        45 A~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~   76 (80)
                      ...|+.|.|.|...++...     .+|.|+|.
T Consensus        18 V~~G~~VTL~C~~~~~~~~-----f~l~k~g~   44 (99)
T d1ucta1          18 IPLDGSVKIQCQAIREAYL-----TQLMIIKN   44 (99)
T ss_dssp             EETTCCEEEEECCCTTCSE-----EEEEEEET
T ss_pred             eeCCCeEEEEEcCCCCCcE-----EEEEECCC
Confidence            3469999999998888554     66666654

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=84.12  E-value=0.46  Score=27.07  Aligned_cols=24  Identities=17%  Similarity=0.342  Sum_probs=17.5

Q ss_pred             CCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           48 GESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      |+.|.|+|.+.-   ..-+| +.|.|+.
T Consensus         1 G~~vtl~C~~~~---~~~~~-~~Wyrq~   24 (94)
T d2gj6d1           1 GAIASLNCTYSD---RGSQS-FFWYRQY   24 (94)
T ss_dssp             TSCEEEEEEECC---TTCCE-EEEEEEC
T ss_pred             CccEEEEEEEcc---ccCCc-EEEEEEC
Confidence            899999998753   23334 7899864

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=82.30  E-value=0.11  Score=30.54  Aligned_cols=27  Identities=26%  Similarity=0.512  Sum_probs=20.2

Q ss_pred             EEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531           43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKK   74 (80)
Q Consensus        43 ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd   74 (80)
                      ++.+.||+|-|+|.++..     -+-+.|-|+
T Consensus         3 lsV~eG~~vtL~C~~~~~-----~~~i~WYrQ   29 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKTS-----INNLQWYRQ   29 (96)
T ss_dssp             CCCSSCCCCCBCCBCSSC-----EEEEEEECC
T ss_pred             ceECCCCCEEEEEEEeCC-----cccEEEEEE
Confidence            456789999999987542     245889885

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.20  E-value=0.75  Score=26.60  Aligned_cols=32  Identities=9%  Similarity=0.151  Sum_probs=22.4

Q ss_pred             eEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531           42 HITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI   75 (80)
Q Consensus        42 ~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG   75 (80)
                      .++.+.|++|-|+|.++-+...  .+.+.|.|+.
T Consensus         8 ~~~v~eG~svtl~C~~~~~~~~--~~~~~Wyrq~   39 (113)
T d1smoa_           8 KYELKEGQTLDVKCDYTLEKFA--SSQKAWQIIR   39 (113)
T ss_dssp             EEECCTTCCEEEEEECCHHHHT--TSCEEEEEEC
T ss_pred             cEEEccCCCEEEEEEeCCCCCC--CCEEEEEECC
Confidence            3668889999999988633111  2458899863