Psyllid ID: psy5344

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560------
MRDAVKSLNGDPQKINPICPSDLVIDHSVQVDFSRSGVSSHGVVVTALALHARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLVGFKGYGLKSQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQFEFEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVDIDFEKEPIGTNKQGAPVFLRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDLSSTYIKRPPFFDGMGRDVTPGDRVIEQARVLLLLGDSVTTDHISPAGSIARTSAAAKFLASKGLSPPDFNSYGSRRGNDDVMVRGTFANIRIVNKLVSKPGPKTVHFPSLEEGGQI
cccccccccccccccccccccccEEEccccccEEccccccccccccccEEEEEccHHHHHHHHcccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHccccccEEEEEccccccccccHHHHHcccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHcccccccccccccccccccEEEEcccEEEcccccEEEEEEccccccccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHcccccHHHHcccccEEEcccccccccccccHHHHHHHHHccEEEEEEccccccccccccHHHcccccccHHHHHHHHHHccccccccccccccccccccEEcccccccHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccHHHHHHHHcccccccccccccccccHHHHHcccccccHHHcccccccccccEEcccccccccc
ccHHHHHHcccHHHccccccccccEEEEEEEEEEEEccccccHHHcHHHHHcccHHHHHHHHHHcccEEEEccEEEEEEEEccccccccHHHHHHHHHHHHcccccEcEEEEEEcHHHHHccHHHHHHHHHHHHHHcEcEEEccccHHHHHHHHHcccHHHHHHHHHHHHHHccccccccEEEEcccccccccccccccccHHHHHHHcccccccccHHHHccccEEEEcccEEEcccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHccccccEEEEccccccHHHHHHHHHccccHHHHHccccEEEccccEEccccccccHHHHHHHHcccEEEEEEEcccccccccccHcHHHHHcccccEHEEHHHcccEEEcccccccccccccccEEEEcccccHHHHHHHHHHHccHHHHHHHHHHHHcccHHHHccEccccccEcccccccEEcccccccccccccccccccccccEEEEEccccccccccccccccccccHHHHHHHHccccccccccccccccccEEEEEccHHHEEEHHHHccccccEEEEcccccccccc
mrdavkslngdpqkinpicpsdlvidhsvqvdfsrsgvsshGVVVTALAlhardpgiEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVgkfveffgpgvkelsIADRATisnmcpeygatvgffpvdqnsleylkqtskspgctkvsrwrsgqnarlvgfkgyglksqvieplnqlgfdvVGFGCmtcignsgpldppidklgatgqfefegktytlKHGSVVIAAITSctntsnpsvmLGAGLLAKKAVEAGLsvapyiktslspgsgvvtYYLRESqvieplnqlgfdVVGFGCmtcignsgpldppivdaiekNELVVAGVLSgnrnfegrihpntranyLASPLLVIAYALAgtvdidfekepigtnkqgapvflrdiwpsrseihavEKQHVIPAMFREVYARIENGsnswralqapegqlypwdlsstyikrppffdgmgrdvtpgdRVIEQARVLLLLGdsvttdhispagsiARTSAAAKFLaskglsppdfnsygsrrgnddvmVRGTFANIRIVNklvskpgpktvhfpsleeggqi
mrdavkslngdpqkinpicpSDLVIDHSVQVDFSRSGVSSHGVVVTALALHARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQtskspgctkvsrwrsgqnaRLVGFKGYGLKSQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQFEFEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVApyiktslspgsGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVDIDFEkepigtnkqgapVFLRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDLSSTYIKRPPFFDGMGRDVTPGDRVIEQARVLLLLGDSVTTDHISPAGSIARTSAAAKFLAskglsppdfnsygsrrgndDVMVRGTFANIRivnklvskpgpktvhfpsleeggqi
MRDAVKSLNGDPQKINPICPSDLVIDHSVQVDFsrsgvsshgvvvTALALHARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLVGFKGYGLKSQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQFEFEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVDIDFEKEPIGTNKQGAPVFLRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDLSSTYIKRPPFFDGMGRDVTPGDRVIEQARVLLLLGDSVTTDHISPAGSIARTSAAAKFLASKGLSPPDFNSYGSRRGNDDVMVRGTFANIRIVNKLVSKPGPKTVHFPSLEEGGQI
****************PICPSDLVIDHSVQVDFSRSGVSSHGVVVTALALHARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQ*****GCTKVSRWRSGQNARLVGFKGYGLKSQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQFEFEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVDIDFEKEPIGTNKQGAPVFLRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDLSSTYIKRPPFFDGMGRDVTPGDRVIEQARVLLLLGDSVTTDHISP**********************************DVMVRGTFANIRIVNKLV*******************
MRDAVKSLNGDPQKINPICPSDLVIDHSVQVDFSRSGVSSHGVVVTALALHARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLVGFKGYGLKSQVIEPLNQLGFDVVGFG****************************KTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVDIDFEKEPIGTNKQGAPVFLRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDLSSTYIKRPPFFDGMGRDVTPGDRVIEQARVLLLLGDSVTTDHISPAGSIARTSAAAKFLASKGLSPPDFNSYGSRRGNDDVMVRGTFANIRIVNKLVSKPGPKTVHF*********
*********GDPQKINPICPSDLVIDHSVQVDFSRSGVSSHGVVVTALALHARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQ***********RWRSGQNARLVGFKGYGLKSQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQFEFEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVDIDFEKEPIGTNKQGAPVFLRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDLSSTYIKRPPFFDGMGRDVTPGDRVIEQARVLLLLGDSVTTDHISPAGSIARTSAAAKFLASKGLSPPDFNSYGSRRGNDDVMVRGTFANIRIVNKLVSKPGPKTVHFPSLEEGGQI
*RDAVKSLNGDPQKINPICPSDLVIDHSVQVDFSRSGVSSHGVVVTALALHARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLVGFKGYGLKSQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQFEFEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVDIDFEKEPIGTNKQGAPVFLRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDLSSTYIKRPPFFDGMGRDVTPGDRVIEQARVLLLLGDSVTTDHISPAGSIARTSAAAKFLASKGLSPPDFNSYGSRRGNDDVMVRGTFANIRIVNKLVSKPGPKTVHFPS*******
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MRDAVKSLNGDPQKINPICPSDLVIDHSVQVDFSRSGVSSHGVVVTALALHARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARLVGFKGYGLKSQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQFEFEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVDIDFEKEPIGTNKQGAPVFLRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDLSSTYIKRPPFFDGMGRDVTPGDRVIEQARVLLLLGDSVTTDHISPAGSIARTSAAAKFLASKGLSPPDFNSYGSRRGNDDVMVRGTFANIRIVNKLVSKPGPKTVHFPSLEEGGQI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query566 2.2.26 [Sep-21-2011]
P28271 889 Cytoplasmic aconitate hyd yes N/A 0.888 0.565 0.624 1e-180
Q90875 889 Cytoplasmic aconitate hyd yes N/A 0.881 0.561 0.627 1e-180
Q63270 889 Cytoplasmic aconitate hyd yes N/A 0.888 0.565 0.616 1e-179
Q01059 889 Cytoplasmic aconitate hyd yes N/A 0.881 0.561 0.613 1e-177
Q0VCU1 889 Cytoplasmic aconitate hyd yes N/A 0.888 0.565 0.611 1e-176
P21399 889 Cytoplasmic aconitate hyd yes N/A 0.915 0.582 0.588 1e-176
Q54X73 894 Probable cytoplasmic acon yes N/A 0.922 0.583 0.559 1e-164
Q23500 887 Probable cytoplasmic acon yes N/A 0.876 0.559 0.571 1e-162
B3VKQ2 964 Iron-responsive element-b no N/A 0.911 0.535 0.522 1e-157
P49608 898 Aconitate hydratase, cyto N/A N/A 0.915 0.576 0.546 1e-156
>sp|P28271|ACOC_MOUSE Cytoplasmic aconitate hydratase OS=Mus musculus GN=Aco1 PE=1 SV=3 Back     alignment and function desciption
 Score =  633 bits (1632), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 329/527 (62%), Positives = 390/527 (74%), Gaps = 24/527 (4%)

Query: 57  IEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGP 116
           IEAEAVMLGQ IS++LP+VIGYK+ GK    VTSTD+VLTITKHLRQ+GVVGKFVEFFGP
Sbjct: 224 IEAEAVMLGQPISMVLPQVIGYKLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGP 283

Query: 117 GVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTK--------VSRW 168
           GV +LSIADRATI+NMCPEYGAT  FFPVD+ S+ YL QT +     K        V  +
Sbjct: 284 GVAQLSIADRATIANMCPEYGATAAFFPVDEVSIAYLLQTGREEDKVKHIQKYLQAVGMF 343

Query: 169 R----SGQNARLVGFKGYGLKSQV------IEPLNQLGFDVVGFGCMTCIGNS----GPL 214
           R    + Q+          LK+ V        P +++    +     +C+G      G  
Sbjct: 344 RDFNDTSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSEMKKDFESCLGAKQGFKGFQ 403

Query: 215 DPPIDKLGATGQFEFEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLS 274
             P D+      F +    +TL HGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLS
Sbjct: 404 VAP-DRHNDRKTFLYSNSEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLS 462

Query: 275 VAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIE 334
           V PYIKTSLSPGSGVVTYYLRES V+  L+QLGFDVVG+GCMTCIGNSGPL  P+V+AI 
Sbjct: 463 VKPYIKTSLSPGSGVVTYYLRESGVMPYLSQLGFDVVGYGCMTCIGNSGPLPEPVVEAIT 522

Query: 335 KNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVDIDFEKEPIGTNKQGA 394
           + +LV  GVLSGNRNFEGR+HPNTRANYLASP LVIAYA+AGTV IDFEKEP+G N QG 
Sbjct: 523 QGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIAYAIAGTVRIDFEKEPLGVNAQGR 582

Query: 395 PVFLRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDLSSTY 454
            VFL+DIWP+R EI AVE+QHVIP MF+EVY +IE  + SW AL AP  +LY W+  STY
Sbjct: 583 QVFLKDIWPTRDEIQAVERQHVIPGMFKEVYQKIETVNKSWNALAAPSEKLYAWNPKSTY 642

Query: 455 IKRPPFFDGMGRDVTPGDRVIEQARVLLLLGDSVTTDHISPAGSIARTSAAAKFLASKGL 514
           IK PPFF+ +  D+ P   +++ A VLL LGDSVTTDHISPAG+IAR S AA++L ++GL
Sbjct: 643 IKSPPFFESLTLDLQPPKSIVD-AYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGL 701

Query: 515 SPPDFNSYGSRRGNDDVMVRGTFANIRIVNKLVSKPGPKTVHFPSLE 561
           +P +FNSYGSRRGND +M RGTFANIR++NK ++K  P+TVH PS E
Sbjct: 702 TPREFNSYGSRRGNDAIMARGTFANIRLLNKFLNKQAPQTVHLPSGE 748
Catalyzes the isomerization of citrate to isocitrate via cis-aconitate.
Mus musculus (taxid: 10090)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 3
>sp|Q90875|ACOC_CHICK Cytoplasmic aconitate hydratase OS=Gallus gallus GN=ACO1 PE=2 SV=1 Back     alignment and function description
>sp|Q63270|ACOC_RAT Cytoplasmic aconitate hydratase OS=Rattus norvegicus GN=Aco1 PE=1 SV=1 Back     alignment and function description
>sp|Q01059|ACOC_RABIT Cytoplasmic aconitate hydratase OS=Oryctolagus cuniculus GN=ACO1 PE=1 SV=1 Back     alignment and function description
>sp|Q0VCU1|ACOC_BOVIN Cytoplasmic aconitate hydratase OS=Bos taurus GN=ACO1 PE=2 SV=1 Back     alignment and function description
>sp|P21399|ACOC_HUMAN Cytoplasmic aconitate hydratase OS=Homo sapiens GN=ACO1 PE=1 SV=3 Back     alignment and function description
>sp|Q54X73|ACOC_DICDI Probable cytoplasmic aconitate hydratase OS=Dictyostelium discoideum GN=aco1 PE=3 SV=1 Back     alignment and function description
>sp|Q23500|ACOC_CAEEL Probable cytoplasmic aconitate hydratase OS=Caenorhabditis elegans GN=aco-1 PE=1 SV=1 Back     alignment and function description
>sp|B3VKQ2|IREB2_PIG Iron-responsive element-binding protein 2 OS=Sus scrofa GN=IREB2 PE=2 SV=1 Back     alignment and function description
>sp|P49608|ACOC_CUCMA Aconitate hydratase, cytoplasmic OS=Cucurbita maxima PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query566
193631957 890 PREDICTED: cytoplasmic aconitate hydrata 0.885 0.562 0.687 0.0
345494302 885 PREDICTED: LOW QUALITY PROTEIN: cytoplas 0.876 0.560 0.667 0.0
158285967 901 AGAP007258-PA [Anopheles gambiae str. PE 0.890 0.559 0.676 0.0
157118150 901 aconitase [Aedes aegypti] gi|108875800|g 0.892 0.560 0.679 0.0
38259910 901 iron regulatory protein [Aedes aegypti] 0.892 0.560 0.678 0.0
195443914 925 GK11469 [Drosophila willistoni] gi|19416 0.878 0.537 0.662 0.0
242018544 893 aconitase, putative [Pediculus humanus c 0.892 0.565 0.666 0.0
383848028 891 PREDICTED: cytoplasmic aconitate hydrata 0.888 0.564 0.667 0.0
194740922 906 GF17523 [Drosophila ananassae] gi|190625 0.885 0.552 0.656 0.0
195107977 943 GI23565 [Drosophila mojavensis] gi|19391 0.879 0.528 0.654 0.0
>gi|193631957|ref|XP_001952191.1| PREDICTED: cytoplasmic aconitate hydratase-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/531 (68%), Positives = 418/531 (78%), Gaps = 30/531 (5%)

Query: 57  IEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGP 116
           IEAEAVMLGQAIS+LLP+V+GY++ G L+Q+ TSTDLVLTITKHLRQ+GVVGKFVEFFGP
Sbjct: 225 IEAEAVMLGQAISMLLPQVLGYQLTGTLNQFATSTDLVLTITKHLRQIGVVGKFVEFFGP 284

Query: 117 GVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARL 176
           GV +LSIADRATISNMCPEYGATVGFFPVDQN+L YL+QT++S    K++  ++   A  
Sbjct: 285 GVTQLSIADRATISNMCPEYGATVGFFPVDQNTLSYLQQTNRS--SEKIAAVKAYLEASK 342

Query: 177 VGFKGYGLKSQ--VIEPLNQLGF--------------DVVGFG--------CMTC-IGNS 211
           +  + Y   SQ  V   +  L                D V           C+T  IG  
Sbjct: 343 M-LRNYDDPSQDPVFSQITNLDLGEVVPSISGPKRPHDRVSVSEAQKDFKSCLTNKIGFK 401

Query: 212 GPLDPPIDKLGATGQFEFEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEA 271
           G    P DKL A+ +FEF  K YTL+HGSVVIAAITSCTNTSNPSVMLGAGLLAK AVEA
Sbjct: 402 GFNISP-DKLNASCEFEFNNKKYTLRHGSVVIAAITSCTNTSNPSVMLGAGLLAKNAVEA 460

Query: 272 GLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVD 331
           GLSVAPYIKTSLSPGSGVVTYYLRES V   L  LGFD VGFGCMTCIGNSGPL   IV+
Sbjct: 461 GLSVAPYIKTSLSPGSGVVTYYLRESGVTPALTALGFDTVGFGCMTCIGNSGPLPEAIVN 520

Query: 332 AIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVDIDFEKEPIGTNK 391
           AIE NELV  GVLSGNRNFEGRIHPNTRANYLASPLLVIAYA+AG +DIDFE EPIG +K
Sbjct: 521 AIEANELVCCGVLSGNRNFEGRIHPNTRANYLASPLLVIAYAIAGRMDIDFETEPIGNDK 580

Query: 392 QGAPVFLRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDLS 451
            G PVFL++IWPSR++I  VEKQ VIPAMF++VYARIENGSN+W+ LQAP+GQLYPWD+S
Sbjct: 581 NGKPVFLKNIWPSRAQIQTVEKQTVIPAMFQDVYARIENGSNAWQCLQAPDGQLYPWDVS 640

Query: 452 STYIKRPPFFDGMGRDVTPGDRVIEQARVLLLLGDSVTTDHISPAGSIARTSAAAKFLAS 511
           STYIK PPFF GM + + PG + ++ A VLL LGDSVTTDHISPAGSIAR S+AA++LAS
Sbjct: 641 STYIKNPPFFSGMTKTL-PGVQSVKGAHVLLFLGDSVTTDHISPAGSIARNSSAARYLAS 699

Query: 512 KGLSPPDFNSYGSRRGNDDVMVRGTFANIRIVNKLVSKPGPKTVHFPSLEE 562
           + ++P DFNSYGSRRGNDD+M RGTFANIR+VNKLV   GPKT+H PS +E
Sbjct: 700 RNITPKDFNSYGSRRGNDDIMARGTFANIRLVNKLVKNTGPKTLHIPSGQE 750

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|345494302|ref|XP_003427264.1| PREDICTED: LOW QUALITY PROTEIN: cytoplasmic aconitate hydratase [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|158285967|ref|XP_308544.4| AGAP007258-PA [Anopheles gambiae str. PEST] gi|157020244|gb|EAA04062.5| AGAP007258-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|157118150|ref|XP_001659032.1| aconitase [Aedes aegypti] gi|108875800|gb|EAT40025.1| AAEL008216-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|38259910|gb|AAR15297.1| iron regulatory protein [Aedes aegypti] Back     alignment and taxonomy information
>gi|195443914|ref|XP_002069634.1| GK11469 [Drosophila willistoni] gi|194165719|gb|EDW80620.1| GK11469 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|242018544|ref|XP_002429734.1| aconitase, putative [Pediculus humanus corporis] gi|212514746|gb|EEB16996.1| aconitase, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|383848028|ref|XP_003699654.1| PREDICTED: cytoplasmic aconitate hydratase [Megachile rotundata] Back     alignment and taxonomy information
>gi|194740922|ref|XP_001952939.1| GF17523 [Drosophila ananassae] gi|190625998|gb|EDV41522.1| GF17523 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|195107977|ref|XP_001998570.1| GI23565 [Drosophila mojavensis] gi|193915164|gb|EDW14031.1| GI23565 [Drosophila mojavensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query566
FB|FBgn0024958 902 Irp-1A "Iron regulatory protei 0.623 0.391 0.713 2.2e-191
FB|FBgn0024957 899 Irp-1B "Iron regulatory protei 0.630 0.397 0.695 9.6e-191
UNIPROTKB|F1NY25 889 ACO1 "Cytoplasmic aconitate hy 0.602 0.383 0.700 4.3e-182
UNIPROTKB|Q90875 889 ACO1 "Cytoplasmic aconitate hy 0.602 0.383 0.700 4.3e-182
MGI|MGI:87879 889 Aco1 "aconitase 1" [Mus muscul 0.590 0.375 0.710 7e-182
ZFIN|ZDB-GENE-031118-76 896 aco1 "aconitase 1, soluble" [D 0.602 0.380 0.674 1.3e-180
UNIPROTKB|D4ACL3 897 Aco1 "Cytoplasmic aconitate hy 0.590 0.372 0.698 4.3e-180
UNIPROTKB|Q01059 889 ACO1 "Cytoplasmic aconitate hy 0.590 0.375 0.692 1.5e-179
RGD|2019 889 Aco1 "aconitase 1, soluble" [R 0.590 0.375 0.698 2.4e-179
UNIPROTKB|I3LJW4 898 ACO1 "Uncharacterized protein" 0.590 0.371 0.692 3.8e-179
FB|FBgn0024958 Irp-1A "Iron regulatory protein 1A" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1295 (460.9 bits), Expect = 2.2e-191, Sum P(3) = 2.2e-191
 Identities = 254/356 (71%), Positives = 292/356 (82%)

Query:   208 IGNSGPLDPPIDKLGATGQFEFE-GKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAK 266
             +G  G   PP   L A+G+F+++ GK+Y + HGSVVIAAITSCTNTSNPSVMLGAGLLAK
Sbjct:   409 VGFKGFAIPP-SALAASGEFQWDDGKSYKIGHGSVVIAAITSCTNTSNPSVMLGAGLLAK 467

Query:   267 KAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLD 326
              AV+ GLS+ PYIKTSLSPGSGVVTYYLRES VI  L QLGFD+VG+GCMTCIGNSGPLD
Sbjct:   468 NAVQKGLSILPYIKTSLSPGSGVVTYYLRESGVIPYLEQLGFDIVGYGCMTCIGNSGPLD 527

Query:   327 PPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVDIDFEKEP 386
               +V+ IEKN LV  GVLSGNRNFEGRIHPNTRANYLASPLLVIAYA+AG VDIDFE EP
Sbjct:   528 ENVVNTIEKNGLVCCGVLSGNRNFEGRIHPNTRANYLASPLLVIAYAIAGRVDIDFEIEP 587

Query:   387 IGTNKQGAPVFLRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGSNSWRALQAPEGQLY 446
             +G +  G  VFLRDIWP+RSEI  VE +HVIPAMF+EVY++I+ GS  W+ L+  + +LY
Sbjct:   588 LGVDSNGKEVFLRDIWPTRSEIQEVEHKHVIPAMFQEVYSKIQLGSRDWQTLEVSDSKLY 647

Query:   447 PWDLSSTYIKRPPFFDGMGRDVTPGDRVIEQARVLLLLGDSVTTDHISPAGSIARTSAAA 506
             PW   STYIK PPFF+GM R + P  + IE+AR LLLLGDSVTTDHISPAGSIAR S AA
Sbjct:   648 PWSEISTYIKLPPFFEGMTRAL-PKLKGIEKARCLLLLGDSVTTDHISPAGSIARKSPAA 706

Query:   507 KFLASKGLSPPDFNSYGSRRGNDDVMVRGTFANIRIVNKLVSKPGPKTVHFPSLEE 562
             ++L+ +GL+P DFNSYGSRRGND VM RGTFANIR+VNKL SK GP T+H PS EE
Sbjct:   707 RYLSERGLTPRDFNSYGSRRGNDAVMARGTFANIRLVNKLASKTGPSTLHVPSGEE 762
GO:0003729 "mRNA binding" evidence=ISS;NAS
GO:0005506 "iron ion binding" evidence=ISS;NAS
GO:0003994 "aconitate hydratase activity" evidence=ISS;IDA
GO:0006447 "regulation of translational initiation by iron" evidence=ISS;NAS
GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA
GO:0030350 "iron-responsive element binding" evidence=IDA
FB|FBgn0024957 Irp-1B "Iron regulatory protein 1B" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1NY25 ACO1 "Cytoplasmic aconitate hydratase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q90875 ACO1 "Cytoplasmic aconitate hydratase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:87879 Aco1 "aconitase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-031118-76 aco1 "aconitase 1, soluble" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|D4ACL3 Aco1 "Cytoplasmic aconitate hydratase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q01059 ACO1 "Cytoplasmic aconitate hydratase" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms
RGD|2019 Aco1 "aconitase 1, soluble" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|I3LJW4 ACO1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6YZX6ACOC_ORYSJ4, ., 2, ., 1, ., 30.53730.92750.5846yesN/A
P21399ACOC_HUMAN4, ., 2, ., 1, ., 30.58850.91510.5826yesN/A
Q90875ACOC_CHICK4, ., 2, ., 1, ., 30.62710.88160.5613yesN/A
Q8FTA8ACON_COREF4, ., 2, ., 1, ., 30.52830.58650.3543yesN/A
Q94A28ACO3M_ARATH4, ., 2, ., 1, ., 30.53180.92750.5276yesN/A
Q54X73ACOC_DICDI4, ., 2, ., 1, ., 30.55910.92220.5838yesN/A
Q0VCU1ACOC_BOVIN4, ., 2, ., 1, ., 30.61100.88860.5658yesN/A
Q68VV0ACON_RICTY4, ., 2, ., 1, ., 30.50370.88690.5717yesN/A
P37032ACON_LEGPH4, ., 2, ., 1, ., 30.51250.88690.5634yesN/A
Q8NQ98ACON_CORGL4, ., 2, ., 1, ., 30.52880.57590.3471yesN/A
P28271ACOC_MOUSE4, ., 2, ., 1, ., 30.62420.88860.5658yesN/A
Q9I3F5ACON1_PSEAE4, ., 2, ., 1, ., 30.50090.88860.5527yesN/A
Q01059ACOC_RABIT4, ., 2, ., 1, ., 30.61390.88160.5613yesN/A
Q1RKD5ACON_RICBR4, ., 2, ., 1, ., 30.50090.91160.5830yesN/A
Q4UK20ACON_RICFE4, ., 2, ., 1, ., 30.45310.94340.6082yesN/A
Q63270ACOC_RAT4, ., 2, ., 1, ., 30.61660.88860.5658yesN/A
A0QX20ACON_MYCS24, ., 2, ., 1, ., 30.56050.55300.3319yesN/A
Q23500ACOC_CAEEL4, ., 2, ., 1, ., 30.57160.87630.5591yesN/A
Q6NH63ACON_CORDI4, ., 2, ., 1, ., 30.53210.57590.3490yesN/A
Q9ZCF4ACON_RICPR4, ., 2, ., 1, ., 30.50280.88860.5728yesN/A
Q4JVM4ACON_CORJK4, ., 2, ., 1, ., 30.52970.56180.3397yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.10.921

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query566
PTZ00092 898 PTZ00092, PTZ00092, aconitate hydratase-like prote 0.0
PRK09277 888 PRK09277, PRK09277, aconitate hydratase; Validated 0.0
PRK12881 889 PRK12881, acnA, aconitate hydratase; Provisional 0.0
PLN00070 936 PLN00070, PLN00070, aconitate hydratase 0.0
TIGR01341 876 TIGR01341, aconitase_1, aconitate hydratase 1 0.0
COG1048 861 COG1048, AcnA, Aconitase A [Energy production and 0.0
cd01586404 cd01586, AcnA_IRP, Aconitase A catalytic domain 1e-142
TIGR02333 858 TIGR02333, 2met_isocit_dHY, 2-methylisocitrate deh 1e-137
pfam00330464 pfam00330, Aconitase, Aconitase family (aconitate 1e-79
cd01351389 cd01351, Aconitase, Aconitase catalytic domain; Ac 2e-57
cd01580171 cd01580, AcnA_IRP_Swivel, Aconitase A swivel domai 4e-41
cd01583382 cd01583, IPMI, 3-isopropylmalate dehydratase catal 7e-32
cd01584412 cd01584, AcnA_Mitochondrial, Aconitase catalyzes t 2e-31
TIGR01340 745 TIGR01340, aconitase_mito, aconitate hydratase, mi 2e-30
COG0065423 COG0065, LeuC, 3-isopropylmalate dehydratase large 2e-26
TIGR01342658 TIGR01342, acon_putative, aconitate hydratase, put 3e-26
PRK00402418 PRK00402, PRK00402, 3-isopropylmalate dehydratase 7e-24
PRK07229646 PRK07229, PRK07229, aconitate hydratase; Validated 2e-23
TIGR02083419 TIGR02083, LEU2, 3-isopropylmalate dehydratase, la 4e-23
cd01585380 cd01585, AcnA_Bact, Aconitase catalyzes the revers 1e-20
TIGR00170465 TIGR00170, leuC, 3-isopropylmalate dehydratase, la 1e-19
TIGR02086412 TIGR02086, IPMI_arch, 3-isopropylmalate dehydratas 2e-17
TIGR01343412 TIGR01343, hacA_fam, homoaconitate hydratase famil 3e-17
PRK05478466 PRK05478, PRK05478, isopropylmalate isomerase larg 2e-16
cd01582363 cd01582, Homoaconitase, Homoaconitase and other un 1e-15
PRK07229646 PRK07229, PRK07229, aconitate hydratase; Validated 6e-15
PTZ00092 898 PTZ00092, PTZ00092, aconitate hydratase-like prote 1e-14
cd01586404 cd01586, AcnA_IRP, Aconitase A catalytic domain 7e-14
PRK09277 888 PRK09277, PRK09277, aconitate hydratase; Validated 3e-13
pfam00694131 pfam00694, Aconitase_C, Aconitase C-terminal domai 2e-12
TIGR00139712 TIGR00139, h_aconitase, homoaconitase 2e-12
PLN00070 936 PLN00070, PLN00070, aconitate hydratase 7e-12
TIGR01341 876 TIGR01341, aconitase_1, aconitate hydratase 1 1e-10
PRK12466471 PRK12466, PRK12466, isopropylmalate isomerase larg 2e-09
PRK12881 889 PRK12881, acnA, aconitate hydratase; Provisional 3e-09
COG1048 861 COG1048, AcnA, Aconitase A [Energy production and 6e-08
cd01585380 cd01585, AcnA_Bact, Aconitase catalyzes the revers 2e-07
PRK12466471 PRK12466, PRK12466, isopropylmalate isomerase larg 4e-07
TIGR02333 858 TIGR02333, 2met_isocit_dHY, 2-methylisocitrate deh 3e-04
PRK11413751 PRK11413, PRK11413, putative hydratase; Provisiona 0.003
>gnl|CDD|240263 PTZ00092, PTZ00092, aconitate hydratase-like protein; Provisional Back     alignment and domain information 
 Score =  783 bits (2023), Expect = 0.0
 Identities = 316/530 (59%), Positives = 383/530 (72%), Gaps = 31/530 (5%)

Query: 56  GIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFG 115
           GIEAEAVMLGQ IS++LPEV+G+K+ GKLS++VT+TDLVLT+T  LR+ GVVGKFVEF+G
Sbjct: 233 GIEAEAVMLGQPISMVLPEVVGFKLTGKLSEHVTATDLVLTVTSMLRKRGVVGKFVEFYG 292

Query: 116 PGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNAR 175
           PGVK LS+ADRATI+NM PEYGAT+GFFP+D+ +L+YLKQT +S    KV        A 
Sbjct: 293 PGVKTLSLADRATIANMAPEYGATMGFFPIDEKTLDYLKQTGRSE--EKVELIEKYLKAN 350

Query: 176 LVGFKGYGLK---SQVIE--------------------PLNQLGFDVVGFGCMTC-IGNS 211
            + F+ Y  +   S V+E                    PL+ L  D     C++  +G  
Sbjct: 351 GL-FRTYAEQIEYSDVLELDLSTVVPSVAGPKRPHDRVPLSDLKKDFTA--CLSAPVGFK 407

Query: 212 GPLDPPIDKLGATGQFEFEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEA 271
           G    P +K     +F ++GK YTL HGSVVIAAITSCTNTSNPSVML AGLLAKKAVE 
Sbjct: 408 G-FGIPEEKHEKKVKFTYKGKEYTLTHGSVVIAAITSCTNTSNPSVMLAAGLLAKKAVEK 466

Query: 272 GLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVD 331
           GL V PYIKTSLSPGS VVT YL  S +++ L +LGF   G+GCMTCIGNSG LDP + +
Sbjct: 467 GLKVPPYIKTSLSPGSKVVTKYLEASGLLKYLEKLGFYTAGYGCMTCIGNSGDLDPEVSE 526

Query: 332 AIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVDIDFEKEPIGTNK 391
           AI  N+LV A VLSGNRNFEGR+HP TRANYLASP LV+AYALAG V+IDFE EP+G++K
Sbjct: 527 AITNNDLVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGRVNIDFETEPLGSDK 586

Query: 392 QGAPVFLRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDLS 451
            G PVFLRDIWPSR EI A+E ++V P MF+EVY+ I  G+  W  LQ P+G+LY WD  
Sbjct: 587 TGKPVFLRDIWPSREEIQALEAKYVKPEMFKEVYSNITQGNKQWNELQVPKGKLYEWDEK 646

Query: 452 STYIKRPPFFDGMGRDVTPGDRVIEQARVLLLLGDSVTTDHISPAGSIARTSAAAKFLAS 511
           STYI  PPFF  M  +  P  + IE A  LL LGDS+TTDHISPAG+IA+ S AAK+L  
Sbjct: 647 STYIHNPPFFQTMELEPPP-IKSIENAYCLLNLGDSITTDHISPAGNIAKNSPAAKYLME 705

Query: 512 KGLSPPDFNSYGSRRGNDDVMVRGTFANIRIVNKLVSKPGPKTVHFPSLE 561
           +G+   DFN+YG+RRGND+VMVRGTFANIR++NKL  K GP TVH P+ E
Sbjct: 706 RGVERKDFNTYGARRGNDEVMVRGTFANIRLINKLCGKVGPNTVHVPTGE 755

Length = 898
>gnl|CDD|236445 PRK09277, PRK09277, aconitate hydratase; Validated Back     alignment and domain information
>gnl|CDD|237246 PRK12881, acnA, aconitate hydratase; Provisional Back     alignment and domain information
>gnl|CDD|215047 PLN00070, PLN00070, aconitate hydratase Back     alignment and domain information
>gnl|CDD|233363 TIGR01341, aconitase_1, aconitate hydratase 1 Back     alignment and domain information
>gnl|CDD|223977 COG1048, AcnA, Aconitase A [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|153136 cd01586, AcnA_IRP, Aconitase A catalytic domain Back     alignment and domain information
>gnl|CDD|131386 TIGR02333, 2met_isocit_dHY, 2-methylisocitrate dehydratase, Fe/S-dependent Back     alignment and domain information
>gnl|CDD|215861 pfam00330, Aconitase, Aconitase family (aconitate hydratase) Back     alignment and domain information
>gnl|CDD|153129 cd01351, Aconitase, Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle Back     alignment and domain information
>gnl|CDD|238812 cd01580, AcnA_IRP_Swivel, Aconitase A swivel domain Back     alignment and domain information
>gnl|CDD|153133 cd01583, IPMI, 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate Back     alignment and domain information
>gnl|CDD|153134 cd01584, AcnA_Mitochondrial, Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle Back     alignment and domain information
>gnl|CDD|233362 TIGR01340, aconitase_mito, aconitate hydratase, mitochondrial Back     alignment and domain information
>gnl|CDD|223143 COG0065, LeuC, 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|130409 TIGR01342, acon_putative, aconitate hydratase, putative, Aquifex type Back     alignment and domain information
>gnl|CDD|234748 PRK00402, PRK00402, 3-isopropylmalate dehydratase large subunit; Reviewed Back     alignment and domain information
>gnl|CDD|235974 PRK07229, PRK07229, aconitate hydratase; Validated Back     alignment and domain information
>gnl|CDD|131138 TIGR02083, LEU2, 3-isopropylmalate dehydratase, large subunit Back     alignment and domain information
>gnl|CDD|153135 cd01585, AcnA_Bact, Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle Back     alignment and domain information
>gnl|CDD|232854 TIGR00170, leuC, 3-isopropylmalate dehydratase, large subunit Back     alignment and domain information
>gnl|CDD|233715 TIGR02086, IPMI_arch, 3-isopropylmalate dehydratase, large subunit Back     alignment and domain information
>gnl|CDD|130410 TIGR01343, hacA_fam, homoaconitate hydratase family protein Back     alignment and domain information
>gnl|CDD|235490 PRK05478, PRK05478, isopropylmalate isomerase large subunit; Validated Back     alignment and domain information
>gnl|CDD|153132 cd01582, Homoaconitase, Homoaconitase and other uncharacterized proteins of the Aconitase family Back     alignment and domain information
>gnl|CDD|235974 PRK07229, PRK07229, aconitate hydratase; Validated Back     alignment and domain information
>gnl|CDD|240263 PTZ00092, PTZ00092, aconitate hydratase-like protein; Provisional Back     alignment and domain information
>gnl|CDD|153136 cd01586, AcnA_IRP, Aconitase A catalytic domain Back     alignment and domain information
>gnl|CDD|236445 PRK09277, PRK09277, aconitate hydratase; Validated Back     alignment and domain information
>gnl|CDD|201399 pfam00694, Aconitase_C, Aconitase C-terminal domain Back     alignment and domain information
>gnl|CDD|129245 TIGR00139, h_aconitase, homoaconitase Back     alignment and domain information
>gnl|CDD|215047 PLN00070, PLN00070, aconitate hydratase Back     alignment and domain information
>gnl|CDD|233363 TIGR01341, aconitase_1, aconitate hydratase 1 Back     alignment and domain information
>gnl|CDD|183543 PRK12466, PRK12466, isopropylmalate isomerase large subunit; Provisional Back     alignment and domain information
>gnl|CDD|237246 PRK12881, acnA, aconitate hydratase; Provisional Back     alignment and domain information
>gnl|CDD|223977 COG1048, AcnA, Aconitase A [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|153135 cd01585, AcnA_Bact, Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle Back     alignment and domain information
>gnl|CDD|183543 PRK12466, PRK12466, isopropylmalate isomerase large subunit; Provisional Back     alignment and domain information
>gnl|CDD|131386 TIGR02333, 2met_isocit_dHY, 2-methylisocitrate dehydratase, Fe/S-dependent Back     alignment and domain information
>gnl|CDD|183125 PRK11413, PRK11413, putative hydratase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 566
KOG0452|consensus 892 100.0
PLN00070 936 aconitate hydratase 100.0
PTZ00092 898 aconitate hydratase-like protein; Provisional 100.0
TIGR01341 876 aconitase_1 aconitate hydratase 1. This model repr 100.0
PRK12881 889 acnA aconitate hydratase; Provisional 100.0
PRK09277 888 aconitate hydratase; Validated 100.0
TIGR02333 858 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe 100.0
COG1048 861 AcnA Aconitase A [Energy production and conversion 100.0
TIGR01340 745 aconitase_mito aconitate hydratase, mitochondrial. 100.0
PRK07229 646 aconitate hydratase; Validated 100.0
TIGR01342658 acon_putative aconitate hydratase, putative, Aquif 100.0
cd01586404 AcnA_IRP Aconitase A catalytic domain. Aconitase A 100.0
PRK11413 751 putative hydratase; Provisional 100.0
cd01583382 IPMI 3-isopropylmalate dehydratase catalyzes the i 100.0
cd01584412 AcnA_Mitochondrial Aconitase catalyzes the reversi 100.0
TIGR00170465 leuC 3-isopropylmalate dehydratase, large subunit. 100.0
cd01585380 AcnA_Bact Aconitase catalyzes the reversible isome 100.0
TIGR00139712 h_aconitase homoaconitase. Homoaconitase, aconitas 100.0
PRK12466471 isopropylmalate isomerase large subunit; Provision 100.0
PRK05478466 isopropylmalate isomerase large subunit; Validated 100.0
TIGR01343412 hacA_fam homoaconitate hydratase family protein. T 100.0
PRK00402418 3-isopropylmalate dehydratase large subunit; Revie 100.0
TIGR02086412 IPMI_arch 3-isopropylmalate dehydratase, large sub 100.0
PF00330465 Aconitase: Aconitase family (aconitate hydratase); 100.0
TIGR02083419 LEU2 3-isopropylmalate dehydratase, large subunit. 100.0
KOG0453|consensus 778 100.0
COG0065423 LeuC 3-isopropylmalate dehydratase large subunit [ 100.0
cd01582363 Homoaconitase Homoaconitase and other uncharacteri 100.0
cd01581436 AcnB Aconitate hydratase B catalyses the formation 100.0
cd01351389 Aconitase Aconitase catalytic domain; Aconitase ca 100.0
PRK09238835 bifunctional aconitate hydratase 2/2-methylisocitr 100.0
TIGR00117844 acnB aconitate hydratase 2. Aconitate hydratase (a 100.0
PLN00094938 aconitate hydratase 2; Provisional 100.0
cd01580171 AcnA_IRP_Swivel Aconitase A swivel domain. This is 100.0
COG1049852 AcnB Aconitase B [Energy production and conversion 100.0
KOG0454|consensus502 99.74
KOG0454|consensus502 99.63
PF00694131 Aconitase_C: Aconitase C-terminal domain CAUTION: 97.92
cd01578149 AcnA_Mitochon_Swivel Mitochondrial aconitase A swi 97.8
PF04412400 DUF521: Protein of unknown function (DUF521); Inte 96.44
cd01579121 AcnA_Bact_Swivel Bacterial Aconitase-like swivel d 94.41
cd0040488 Aconitase_swivel Aconitase swivel domain. Aconitas 94.14
COG1679403 Predicted aconitase [General function prediction o 94.08
cd01355389 AcnX Putative Aconitase X catalytic domain. Putati 92.6
TIGR02084156 leud 3-isopropylmalate dehydratase, small subunit. 88.71
PRK09238 835 bifunctional aconitate hydratase 2/2-methylisocitr 85.39
PRK00439163 leuD 3-isopropylmalate dehydratase small subunit; 83.88
PLN00072246 3-isopropylmalate isomerase/dehydratase small subu 80.82
>KOG0452|consensus Back     alignment and domain information 
Probab=100.00  E-value=6.8e-188  Score=1477.44  Aligned_cols=559  Identities=68%  Similarity=1.063  Sum_probs=543.9

Q ss_pred             CHHHHHhcCCCCCccCCCCCeeEEeccCCcccccCCCCc--------------------------------------chH
Q psy5344           1 MRDAVKSLNGDPQKINPICPSDLVIDHSVQVDFSRSGVS--------------------------------------SHG   42 (566)
Q Consensus         1 ~r~~~~~~g~dp~~inp~~p~~lviDHsv~~d~~~~~~~--------------------------------------~HQ   42 (566)
                      ||||++++|+||+||||.||+|||||||+|+||+++.++                                      +||
T Consensus       103 MRdAv~~lGgdp~KinP~cP~DLviDHSvQvDf~r~~~alqkN~~lEF~RNkERf~FlKWgs~af~NmlivPPGsGivHQ  182 (892)
T KOG0452|consen  103 MRDAVKNLGGDPEKINPLCPVDLVIDHSVQVDFARSADALQKNQELEFERNKERFTFLKWGSRAFDNMLIVPPGSGIVHQ  182 (892)
T ss_pred             HHHHHHHcCCCHHHcCCCCCcceEeeeeeEEeeccCHHHHhhcceeeeecchhhhhhhhhhhHhhcceEEeCCCCceeEE
Confidence            899999999999999999999999999999999998766                                      999


Q ss_pred             HHHhhccc-------------------c-----------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCCChhH
Q psy5344          43 VVVTALAL-------------------H-----------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTD   92 (566)
Q Consensus        43 v~lE~la~-------------------H-----------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtakD   92 (566)
                      |||||||+                   |           |||||+|+|++|+|||+.|.+|+|||++|+|+|+++||++|
T Consensus       183 vNLEYLaRvVF~~~~~lyPDSvVGTDSHtTMidGlGvlGWGVGGIEaEAvMLGqpiSmvlP~ViG~~L~Gkl~~~vTstD  262 (892)
T KOG0452|consen  183 VNLEYLARVVFESKDLLYPDSVVGTDSHTTMIDGLGVLGWGVGGIEAEAVMLGQPISMVLPEVIGYKLTGKLSPLVTSTD  262 (892)
T ss_pred             eehhhhhheeeccCceecccccccccCcceeecccceeeccccceehhhhhhcCchheecccceeEEeccccCCCceeeh
Confidence            99999999                   5           99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCccceEEEEccCcccccCccccccccccccccCceEeeecCChhHHHHHhhcCCCcchhhhhhhhhhh
Q psy5344          93 LVLTITKHLRQLGVVGKFVEFFGPGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQ  172 (566)
Q Consensus        93 liL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~~~y~  172 (566)
                      |+|+|+++||+.|++||||||||+|++.||+.||+||+||+||||||.||||+|+.|++||+.|||+++.++.++  .|+
T Consensus       263 lVLtiTk~LRq~GVvGKFVEF~G~Gva~LSiaDRaTIaNMcPEYGAt~gfFPvD~vtl~yl~~Tgrs~~~~~~i~--~yL  340 (892)
T KOG0452|consen  263 LVLTITKHLRQLGVVGKFVEFFGPGVAELSIADRATIANMCPEYGATMGFFPVDEVTLQYLKQTGRSEEKLDIIE--KYL  340 (892)
T ss_pred             hhhhHHHHHHHhccceeeEEEecCccceechhhhhhhhhcCccccceeeeeccchhHHHHHHHcCCcHHHHHHHH--HHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998888  999


Q ss_pred             hhhhcCCCCCCCC------cceeeccccCC------------Ccccccccc-----ccccCCC---CCCCCCCCCCcccc
Q psy5344         173 NARLVGFKGYGLK------SQVIEPLNQLG------------FDVVGFGCM-----TCIGNSG---PLDPPIDKLGATGQ  226 (566)
Q Consensus       173 ~ad~~~~~~y~~~------~~viei~~DLs------------~d~v~l~~~-----~~~~~~v---~~~~~p~~~~~~~~  226 (566)
                      ++ ..++++|.++      .+++++  ||+            ||||++++|     +|+.+++   +|.+.|+...+.+.
T Consensus       341 ka-~~~f~~~~~~~q~p~yt~~l~l--~L~~vvp~vSGPKRPhDrV~v~dmk~Df~scL~~~vgFKgFai~~e~q~~~v~  417 (892)
T KOG0452|consen  341 KA-VKMFRDYNDPSQDPVYTQVLEL--DLGTVVPSVSGPKRPHDRVAVSDMKADFHSCLDSKVGFKGFAIAPEAQSKSVE  417 (892)
T ss_pred             HH-HhhhhhccCcccCcceeeEEEE--ecCceeeccCCCCCCccccchhhHHHHHHHhhcCcccccccccChhHhhceEE
Confidence            99 8999998664      349999  999            799999999     6888877   55677877777778


Q ss_pred             eeecCccceeccceEEEEEeecCCCCCChHHHHHHHHHHHHHHHcCCccCCceeeeecCCcHHHHHHHHHcCChHHHHhC
Q psy5344         227 FEFEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQL  306 (566)
Q Consensus       227 v~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~llak~Av~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gll~~L~~a  306 (566)
                      +.++|+.++|+||+|++|+|+||||+|||++|++|+||||||+++|++|+||+||+++|||.+|+.||.++|++++|+++
T Consensus       418 f~~~g~~~~l~HGsVVIAAitSCTNtsNPSVMlgAgLlAKkAv~~GL~v~PyikTSLsPGSgvVt~YL~~SGv~pyL~kl  497 (892)
T KOG0452|consen  418 FQYDGTTAKLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLNVKPYIKTSLSPGSGVVTKYLSESGVLPYLEKL  497 (892)
T ss_pred             EEECCeeeEeccCcEEEEEEecccCCCCcHHhhhhhHHHHHHHhcCceecceeecccCCCCchhhhhhhhccchhHHHhc
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEecCCccccccCCCCCCccccccccCCceEEEeeecccCCCcCCcCCCcCceeecCHHHHHHHHHcCccccCCCCCC
Q psy5344         307 GFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVDIDFEKEP  386 (566)
Q Consensus       307 G~~v~~~gCg~CiG~~g~l~~~v~~~i~~g~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I~~d~~~dp  386 (566)
                      ||.|+||||++||||+|+|++.+.++|.+|++|+++|+|+|||||||+||.+++||||||+||+||||+|++++||++||
T Consensus       498 GF~IvGYGC~TCiGNsgpl~e~V~~ai~~ndlV~~gvLSGNrNFEGRvhp~tRANYLASPpLvvaYaiaGtV~IDfe~ep  577 (892)
T KOG0452|consen  498 GFDIVGYGCMTCIGNSGPLDEAVVNAIEQNDLVAAGVLSGNRNFEGRVHPNTRANYLASPPLVVAYAIAGTVNIDFETEP  577 (892)
T ss_pred             CceeeccccceeccCCCCCCHHHHHhhhcCCeEEEEEeecCCCccccccccchhhhccCchHHhhhhhcceeecceeccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCceecccCCCChhhhhHhhhhccCchhhHhhhccccCCCCccccccCCCCCccccCCCCCCCCCCCCCCCCCC
Q psy5344         387 IGTNKQGAPVFLRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDLSSTYIKRPPFFDGMGR  466 (566)
Q Consensus       387 lg~~~~G~~v~l~diwP~~~Ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~styI~~pp~f~~~~~  466 (566)
                      ||++++||.|||+||||+++||+++++++|.|+||+++|+.|+.|++.||.|++|++.+|+||++||||++||||++|+.
T Consensus       578 lg~~~~Gk~vfl~DIWPtr~Ev~~ve~~~Vip~mFk~~y~~I~~gn~~Wn~L~~p~~~Ly~Wd~~STYI~~ppfF~~mT~  657 (892)
T KOG0452|consen  578 LGVDPDGKNVFLRDIWPTREEVAEVEEEHVIPSMFKEVYEKIELGNPDWNQLEVPSSKLYPWDPKSTYIKEPPFFEGMTR  657 (892)
T ss_pred             cccCCCCCeEEEeecCCCHHHHHHHHHhcccHHHHHHHHHHHhhcChhhhhccCCccceeccCCCCceecCCcccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccCceEEEEeCCCccccccccCCCCCCCCHHHHHHHhCCCCCCCCcccccCcCCchhhhccccccchhhhhh
Q psy5344         467 DVTPGDRVIEQARVLLLLGDSVTTDHISPAGSIARTSAAAKFLASKGLSPPDFNSYGSRRGNDDVMVRGTFANIRIVNKL  546 (566)
Q Consensus       467 ~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~s~ag~yL~~~g~~~~dfnsyg~rrgn~evm~rgtf~n~r~~n~~  546 (566)
                      +++. +++|++|+||+.||||||||||||||+|.++|||+|||.+||+.|+|||||||||||+|||.|||||||||.|+|
T Consensus       658 ~~p~-~~~i~~A~~LLnlGDSvTTDHISPAGsI~r~SpAAr~L~~Rg~tprdFNsYGsRRGND~vMaRGTFANIrlvNkl  736 (892)
T KOG0452|consen  658 DLPG-PQSIEDAYCLLNLGDSVTTDHISPAGSIARTSPAARYLTERGLTPRDFNSYGSRRGNDAVMARGTFANIRLVNKL  736 (892)
T ss_pred             CCCC-cccccceeEEEeccCcccccccCCCccccccCHHHHHHHhcCCChhhccccccccCchhhhhcccchhhHHHHHH
Confidence            9888 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCceeecCCCccccC
Q psy5344         547 VSKPGPKTVHFPSLEEGGQ  565 (566)
Q Consensus       547 ~~~~g~~t~~~p~~~~~~~  565 (566)
                      +.+.|+.|+|+|+||++++
T Consensus       737 ~~k~gP~TvHiPsge~ldv  755 (892)
T KOG0452|consen  737 LSKVGPKTVHIPSGEELDV  755 (892)
T ss_pred             hcccCCceEecCCCCeecH
Confidence            9999999999999999886

>PLN00070 aconitate hydratase Back     alignment and domain information
>PTZ00092 aconitate hydratase-like protein; Provisional Back     alignment and domain information
>TIGR01341 aconitase_1 aconitate hydratase 1 Back     alignment and domain information
>PRK12881 acnA aconitate hydratase; Provisional Back     alignment and domain information
>PRK09277 aconitate hydratase; Validated Back     alignment and domain information
>TIGR02333 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-dependent Back     alignment and domain information
>COG1048 AcnA Aconitase A [Energy production and conversion] Back     alignment and domain information
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial Back     alignment and domain information
>PRK07229 aconitate hydratase; Validated Back     alignment and domain information
>TIGR01342 acon_putative aconitate hydratase, putative, Aquifex type Back     alignment and domain information
>cd01586 AcnA_IRP Aconitase A catalytic domain Back     alignment and domain information
>PRK11413 putative hydratase; Provisional Back     alignment and domain information
>cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate Back     alignment and domain information
>cd01584 AcnA_Mitochondrial Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle Back     alignment and domain information
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit Back     alignment and domain information
>cd01585 AcnA_Bact Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle Back     alignment and domain information
>TIGR00139 h_aconitase homoaconitase Back     alignment and domain information
>PRK12466 isopropylmalate isomerase large subunit; Provisional Back     alignment and domain information
>PRK05478 isopropylmalate isomerase large subunit; Validated Back     alignment and domain information
>TIGR01343 hacA_fam homoaconitate hydratase family protein Back     alignment and domain information
>PRK00402 3-isopropylmalate dehydratase large subunit; Reviewed Back     alignment and domain information
>TIGR02086 IPMI_arch 3-isopropylmalate dehydratase, large subunit Back     alignment and domain information
>PF00330 Aconitase: Aconitase family (aconitate hydratase); InterPro: IPR001030 Aconitase (aconitate hydratase; 4 Back     alignment and domain information
>TIGR02083 LEU2 3-isopropylmalate dehydratase, large subunit Back     alignment and domain information
>KOG0453|consensus Back     alignment and domain information
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism] Back     alignment and domain information
>cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family Back     alignment and domain information
>cd01581 AcnB Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle Back     alignment and domain information
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle Back     alignment and domain information
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated Back     alignment and domain information
>TIGR00117 acnB aconitate hydratase 2 Back     alignment and domain information
>PLN00094 aconitate hydratase 2; Provisional Back     alignment and domain information
>cd01580 AcnA_IRP_Swivel Aconitase A swivel domain Back     alignment and domain information
>COG1049 AcnB Aconitase B [Energy production and conversion] Back     alignment and domain information
>KOG0454|consensus Back     alignment and domain information
>KOG0454|consensus Back     alignment and domain information
>PF00694 Aconitase_C: Aconitase C-terminal domain CAUTION: The Prosite patterns do not match this domain Back     alignment and domain information
>cd01578 AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel domain Back     alignment and domain information
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins Back     alignment and domain information
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain Back     alignment and domain information
>cd00404 Aconitase_swivel Aconitase swivel domain Back     alignment and domain information
>COG1679 Predicted aconitase [General function prediction only] Back     alignment and domain information
>cd01355 AcnX Putative Aconitase X catalytic domain Back     alignment and domain information
>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit Back     alignment and domain information
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated Back     alignment and domain information
>PRK00439 leuD 3-isopropylmalate dehydratase small subunit; Reviewed Back     alignment and domain information
>PLN00072 3-isopropylmalate isomerase/dehydratase small subunit; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query566
3snp_A 908 Crystal Structure Analysis Of Iron Regulatory Prote 1e-177
2b3x_A 888 Structure Of An Orthorhombic Crystal Form Of Human 1e-177
1c96_A 753 S642a:citrate Complex Of Aconitase Length = 753 1e-24
1b0m_A 753 Aconitase R644q:fluorocitrate Complex Length = 753 2e-24
5acn_A 754 Structure Of Activated Aconitase. Formation Of The 2e-24
1c97_A 753 S642a:isocitrate Complex Of Aconitase Length = 753 2e-24
1b0j_A 754 Crystal Structure Of Aconitase With Isocitrate Leng 2e-24
1nis_A 754 Crystal Structure Of Aconitase With Trans-Aconitate 2e-24
1aco_A 754 Crystal Structure Of Aconitase With Transaconitate 2e-24
1ami_A 754 Steric And Conformational Features Of The Aconitase 2e-24
>pdb|3SNP|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In Complex With Ferritin H Ire Rna Length = 908 Back     alignment and structure 
Iteration: 1

 Score =  617 bits (1592), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 325/531 (61%), Positives = 393/531 (74%), Gaps = 32/531 (6%)
Query: 57  IEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFGP 116
           IEAEAVMLGQ IS++LP+VIGY++ GK    VTSTD+VLTITKHLRQ+GVVGKFVEFFGP
Sbjct: 243 IEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGP 302
Query: 117 GVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQNARL 176
           GV +LSIADRATI+NMCPEYGAT  FFPVD+ S++YL QT +    +KV + R    A  
Sbjct: 303 GVAQLSIADRATIANMCPEYGATATFFPVDEVSIKYLVQTGRDE--SKVKQIRKYLQA-- 358
Query: 177 VG-FKGYGLKSQ------VIE---------------PLNQLGFDVVGFGCMTCIGNS--- 211
           VG F+ Y   SQ      V+E               P +++    +     +C+G     
Sbjct: 359 VGMFRDYSDPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGF 418
Query: 212 -GPLDPPIDKLGATGQFEFEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVE 270
            G    P D       F +    +TL HGSVVIAAITS TNTSNPSVMLGAGLLAKKAV+
Sbjct: 419 KGFQVAP-DHHNDHKTFIYNDSEFTLSHGSVVIAAITSSTNTSNPSVMLGAGLLAKKAVD 477
Query: 271 AGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIV 330
           AGL+V PY+KTSLSPGSGVVTYYLRES V+  L+QLGFDVVG+G MTCIGNSGPL  P+V
Sbjct: 478 AGLNVKPYVKTSLSPGSGVVTYYLRESGVMPYLSQLGFDVVGYGSMTCIGNSGPLPEPVV 537
Query: 331 DAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVDIDFEKEPIGTN 390
           +AI + +LV  GVLSGNRNFEGR+HPNTRANYLASP LVIAYA+AGT+ IDFEKEP+GTN
Sbjct: 538 EAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIAYAIAGTIRIDFEKEPLGTN 597
Query: 391 KQGAPVFLRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDL 450
            +G  VFLRDIWP+R EI AVE+Q+VIP MF EVY +IE  + SW AL AP  +LY W+ 
Sbjct: 598 AKGQQVFLRDIWPTREEIQAVERQYVIPGMFTEVYQKIETVNASWNALAAPSDKLYLWNP 657
Query: 451 SSTYIKRPPFFDGMGRDVTPGDRVIEQARVLLLLGDSVTTDHISPAGSIARTSAAAKFLA 510
            STYIK PPFF+ +  D+ P   +++ A VLL LGDSVTTDHISPAG+IAR S AA++L 
Sbjct: 658 KSTYIKSPPFFENLTLDLQPPKSIVD-AYVLLNLGDSVTTDHISPAGNIARNSPAARYLT 716
Query: 511 SKGLSPPDFNSYGSRRGNDDVMVRGTFANIRIVNKLVSKPGPKTVHFPSLE 561
           ++GL+P +FNSYGSRRGND +M RGTFANIR++N+ ++K  P+T+H PS E
Sbjct: 717 NRGLTPREFNSYGSRRGNDAIMARGTFANIRLLNRFLNKQAPQTIHLPSGE 767
>pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human Cytosolic Aconitase (Irp1) Length = 888 Back     alignment and structure
>pdb|1C96|A Chain A, S642a:citrate Complex Of Aconitase Length = 753 Back     alignment and structure
>pdb|1B0M|A Chain A, Aconitase R644q:fluorocitrate Complex Length = 753 Back     alignment and structure
>pdb|5ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The (4fe-4s) Cluster In The Crystal Length = 754 Back     alignment and structure
>pdb|1C97|A Chain A, S642a:isocitrate Complex Of Aconitase Length = 753 Back     alignment and structure
>pdb|1B0J|A Chain A, Crystal Structure Of Aconitase With Isocitrate Length = 754 Back     alignment and structure
>pdb|1NIS|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And Nitrocitrate Bound Length = 754 Back     alignment and structure
>pdb|1ACO|A Chain A, Crystal Structure Of Aconitase With Transaconitate Bound Length = 754 Back     alignment and structure
>pdb|1AMI|A Chain A, Steric And Conformational Features Of The Aconitase Mechanism Length = 754 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query566
2b3y_A 888 Iron-responsive element binding protein 1; IRP1 IR 0.0
2b3y_A 888 Iron-responsive element binding protein 1; IRP1 IR 1e-14
1c96_A 753 Mitochondrial aconitase; lyase, tricarboxylic acid 1e-131
1l5j_A865 Aconitate hydratase 2; molecular recognition, RNA 1e-14
1l5j_A865 Aconitate hydratase 2; molecular recognition, RNA 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A Length = 888 Back     alignment and structure
 Score =  862 bits (2229), Expect = 0.0
 Identities = 314/537 (58%), Positives = 383/537 (71%), Gaps = 40/537 (7%)

Query: 56  GIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVLTITKHLRQLGVVGKFVEFFG 115
           GIEAEAVMLGQ IS++LP+VIGY++ GK    VTSTD+VLTITKHLRQ+GVVGKFVEFFG
Sbjct: 222 GIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFG 281

Query: 116 PGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSR-------- 167
           PGV +LSIADRATI+NMCPEYGAT  FFPVD+ S+ YL QT +     K+          
Sbjct: 282 PGVAQLSIADRATIANMCPEYGATAAFFPVDEVSITYLVQTGRDE--EKLKYIKKYLQAV 339

Query: 168 --WRSGQNARLVGFKGYGLKSQVIE--------------------PLNQLGFDVVGFGCM 205
             +R   +        +   +QV+E                     ++ +  D     C+
Sbjct: 340 GMFRDFNDP--SQDPDF---TQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFES--CL 392

Query: 206 TCIGNSGPLDPPIDKLGATGQFEFEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLA 265
                        +       F ++   +TL HGSVVIAAITSCTNTSNPSVMLGAGLLA
Sbjct: 393 GAKQGFKGFQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLA 452

Query: 266 KKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVGFGCMTCIGNSGPL 325
           KKAV+AGL+V PYIKTSLSPGSGVVTYYL+ES V+  L+QLGFDVVG+GCMTCIGNSGPL
Sbjct: 453 KKAVDAGLNVMPYIKTSLSPGSGVVTYYLQESGVMPYLSQLGFDVVGYGCMTCIGNSGPL 512

Query: 326 DPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAGTVDIDFEKE 385
             P+V+AI + +LV  GVLSGNRNFEGR+HPNTRANYLASP LVIAYA+AGT+ IDFEKE
Sbjct: 513 PEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIAYAIAGTIRIDFEKE 572

Query: 386 PIGTNKQGAPVFLRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGSNSWRALQAPEGQL 445
           P+G N +G  VFL+DIWP+R EI AVE+Q+VIP MF+EVY +IE  + SW AL  P  +L
Sbjct: 573 PLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKIETVNESWNALATPSDKL 632

Query: 446 YPWDLSSTYIKRPPFFDGMGRDVTPGDRVIEQARVLLLLGDSVTTDHISPAGSIARTSAA 505
           + W+  STYIK PPFF+ +  D+    + I  A VLL LGDSVTTDHISPAG+IAR S A
Sbjct: 633 FFWNSKSTYIKSPPFFENLTLDL-QPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPA 691

Query: 506 AKFLASKGLSPPDFNSYGSRRGNDDVMVRGTFANIRIVNKLVSKPGPKTVHFPSLEE 562
           A++L ++GL+P +FNSYGSRRGND VM RGTFANIR++N+ ++K  P+T+H PS E 
Sbjct: 692 ARYLTNRGLTPREFNSYGSRRGNDAVMARGTFANIRLLNRFLNKQAPQTIHLPSGEI 748
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A Length = 888 Back     alignment and structure
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A Length = 753 Back     alignment and structure
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1 Length = 865 Back     alignment and structure
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1 Length = 865 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query566
2b3y_A 888 Iron-responsive element binding protein 1; IRP1 IR 100.0
1c96_A 753 Mitochondrial aconitase; lyase, tricarboxylic acid 100.0
1l5j_A865 Aconitate hydratase 2; molecular recognition, RNA 100.0
1l5j_A 865 Aconitate hydratase 2; molecular recognition, RNA 99.1
2hcu_A 213 3-isopropylmalate dehydratase small subunit; beta 98.23
1v7l_A163 3-isopropylmalate dehydratase small subunit; beta 93.44
2pkp_A170 Homoaconitase small subunit; beta barrel, amino-ac 91.52
3vba_A176 Isopropylmalate/citramalate isomerase small subun; 82.87
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A Back     alignment and structure
Probab=100.00  E-value=1e-165  Score=1401.63  Aligned_cols=548  Identities=64%  Similarity=1.004  Sum_probs=511.7

Q ss_pred             CHHHHHhcCCCCCccCCCCCeeEEeccCCcccccCCC--------------------------------------CcchH
Q psy5344           1 MRDAVKSLNGDPQKINPICPSDLVIDHSVQVDFSRSG--------------------------------------VSSHG   42 (566)
Q Consensus         1 ~r~~~~~~g~dp~~inp~~p~~lviDHsv~~d~~~~~--------------------------------------~~~HQ   42 (566)
                      ||++++++|.||+||||.+|++++|||++|++..+..                                      ++|||
T Consensus        99 mr~a~~~~g~d~~ki~p~~pv~lv~DH~v~~~~~~~~da~~~n~~~e~~rN~e~~~fL~w~~~~f~~~~~~~pG~GI~Hq  178 (888)
T 2b3y_A           99 MRDAVKKLGGDPEKINPVCPADLVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKWGSQAFHNMRIIPPGSGIIHQ  178 (888)
T ss_dssp             HHHHHHHTTCCGGGSSCSSCEEEECCSSCCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECTTSCCHHH
T ss_pred             HHHHHHhcCCChhhcCCCCCeeEEeCCCCCcCCccccCHHHHHHHHHHHHhcchHHHHHHHHHhccCCCCCCCCCCCcce
Confidence            7899999999999999999999999999999765533                                      33999


Q ss_pred             HHHhhccc-------------------c-----------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCCChhH
Q psy5344          43 VVVTALAL-------------------H-----------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTD   92 (566)
Q Consensus        43 v~lE~la~-------------------H-----------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtakD   92 (566)
                      ||+||||+                   |           |||||+|+|++|+||++||++||+|+|+|+|+|++||||||
T Consensus       179 v~lE~la~~v~~~~G~~~P~tlVGtDSHT~t~GglG~la~GVGg~eae~~mag~~~~~~~PevvgV~ltG~L~~gVtakD  258 (888)
T 2b3y_A          179 VNLEYLARVVFDQDGYYYPDSLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTD  258 (888)
T ss_dssp             HHHHTTCCSEEEETTEEEECEEEESSGGGGGGGGGTCEEEECCHHHHHHHHTTCCEEEECCCEEEEEEESCCCTTCCHHH
T ss_pred             ehhhhccccccccCcccccCeEEecCCCccccCcceeEEEccCHHHHHHHHhcCcEeecCCCEEEEEEEccCCCCcchhH
Confidence            99998654                   6           99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCccceEEEEccCcccccCccccccccccccccCceEeeecCChhHHHHHhhcCCCcchhhhhhhhhhh
Q psy5344          93 LVLTITKHLRQLGVVGKFVEFFGPGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQ  172 (566)
Q Consensus        93 liL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~~~y~  172 (566)
                      |||+|+++||++|++||||||+|||+++||+++|||||||++|+|||+|+||+|++|++||+.|||+++.+++++  +|.
T Consensus       259 viL~i~~~l~~~G~vGk~vEF~G~gv~~LS~~~R~TI~NMa~E~GAt~g~fp~De~T~~YL~~~gr~~~~~~~~e--~y~  336 (888)
T 2b3y_A          259 IVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVSITYLVQTGRDEEKLKYIK--KYL  336 (888)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEESGGGTTSCHHHHHHHHHTHHHHTCSEEECCCCHHHHHHHHHTTCCHHHHHHHH--HHH
T ss_pred             HHHHHHHHhccCCccceEEEEecCccccccccchhhhhhcchhhCCeeEEecCcHHHHHHHHhcCCchHHHHHHH--HHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999987777777  888


Q ss_pred             hhhhcCCCCC----CC--CcceeeccccCCCccccccccccccCCCCCCCCCCCCCcccc--------------------
Q psy5344         173 NARLVGFKGY----GL--KSQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATGQ--------------------  226 (566)
Q Consensus       173 ~ad~~~~~~y----~~--~~~viei~~DLs~d~v~l~~~~~~~~~v~~~~~p~~~~~~~~--------------------  226 (566)
                      ++ +++|+++    ++  +++++||  |||.    |      .|++++|.+|+++..+..                    
T Consensus       337 ~a-~~l~~~l~~d~~dA~Yd~~iei--DLs~----l------eP~VAgP~~P~~~~plse~~~~~~~~l~~~~g~~g~~~  403 (888)
T 2b3y_A          337 QA-VGMFRDFNDPSQDPDFTQVVEL--DLKT----V------VPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGFKGFQV  403 (888)
T ss_dssp             HH-HTCCCCTTCGGGCCCCSEEEEE--EGGG----C------CSEEECSSCTTCEEEGGGHHHHHHHHHHSCSBTTBCCC
T ss_pred             HH-HHHHhccCCCCCCCceEEEEEE--Ehhh----e------eEeecCCCCcccccChHHhhhhHHHhhhcccccccccc
Confidence            98 8899762    22  2679999  9982    2      344566777776433221                    


Q ss_pred             ----------eeecCccceeccceEEEEEeecCCCCCChHHHHHHHHHHHHHHHcCCccCCceeeeecCCcHHHHHHHHH
Q psy5344         227 ----------FEFEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRE  296 (566)
Q Consensus       227 ----------v~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~llak~Av~~G~kv~p~Vk~~v~PgS~~V~~~l~~  296 (566)
                                +.++|++.+|+||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||++
T Consensus       404 ~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~PGS~~V~~~l~~  483 (888)
T 2b3y_A          404 APEHHNDHKTFIYDNTEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVTYYLQE  483 (888)
T ss_dssp             CGGGTTCEEEEEETTEEEEEETTBEEEEEECCHHHHTCHHHHHHHHHHHHHHHHTTCCCCTTSEEEECCSSHHHHHHHHH
T ss_pred             cchhhcccceeecCCccccccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHHhcCCCCCCCceEEEeCCCHHHHHHHHH
Confidence                      2344555689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHhCCCeEecCCccccccCCCCCCccccccccCCceEEEeeecccCCCcCCcCCCcCceeecCHHHHHHHHHcC
Q psy5344         297 SQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAG  376 (566)
Q Consensus       297 ~Gll~~L~~aG~~v~~~gCg~CiG~~g~l~~~v~~~i~~g~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG  376 (566)
                      +||+++|+++||+|++||||+||||++++++++++.|.+||+++++|||+||||+||||+..+++|||||+|||||||+|
T Consensus       484 ~Gl~~~l~~aGf~i~~~GC~~CiG~~~~l~~~~~~~i~~ge~~~~~vsS~NRNFeGR~g~~~~~~yLaSP~lvaA~AiaG  563 (888)
T 2b3y_A          484 SGVMPYLSQLGFDVVGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIAYAIAG  563 (888)
T ss_dssp             TSCHHHHHHTTCCBCCSSCGGGGTCCCCCCHHHHHHHHHHTCCCEEEESSSCCCTTSSCTTCSEEEECCHHHHHHHHHHC
T ss_pred             cCcHHHHHHcCCEEeCCCCcceeCCCCCCCchhhhhhccCCeeEEEEeccCCCcCcCCCCCccccEecCHHHHHHHHhcC
Confidence            99999999999999999999999999999998888999999988899999999999999999999999999999999999


Q ss_pred             ccccCCCCCCccCCCCCCceecccCCCChhhhhHhhhhccCchhhHhhhccccCCCCccccccCCCCCccccCCCCCCCC
Q psy5344         377 TVDIDFEKEPIGTNKQGAPVFLRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGSNSWRALQAPEGQLYPWDLSSTYIK  456 (566)
Q Consensus       377 ~I~~d~~~dplg~~~~G~~v~l~diwP~~~Ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~styI~  456 (566)
                      +|++|+++||||.++||++|||+||||+.+|+++++.+.+++++|.+.|.+++++++.|+.+++|++.+|+||++||||+
T Consensus       564 ~i~~d~~~dpl~~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~~~~~~~~~~~~~~~~~~~~~w~~~St~i~  643 (888)
T 2b3y_A          564 TIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKIETVNESWNALATPSDKLFFWNSKSTYIK  643 (888)
T ss_dssp             BSCCCTTTSCSEEETTTEEECHHHHCCCHHHHHHHHHHHCCHHHHHHHHTTTTTCCHHHHHCCCCCCSSCCCCTTCSSCC
T ss_pred             eeecccccCccccCCCCCcccccccCCchhhhHHHHHhcCCHHHhhhhhccccCCccccccCCCCCCCccccCCCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCcccCceEEEEeCCCccccccccCCCCCCCCHHHHHHHhCCCCCCCCcccccCcCCchhhhccc
Q psy5344         457 RPPFFDGMGRDVTPGDRVIEQARVLLLLGDSVTTDHISPAGSIARTSAAAKFLASKGLSPPDFNSYGSRRGNDDVMVRGT  536 (566)
Q Consensus       457 ~pp~f~~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~s~ag~yL~~~g~~~~dfnsyg~rrgn~evm~rgt  536 (566)
                      +||||++|+..+.+ ++++.++|+|+++|||||||||||||+|+++||||+||+++||+++|||||||||||||||||||
T Consensus       644 ~~p~f~~~~~~~~~-~~~~~~~~~l~~~gdnitTDhIsPAg~i~~~s~ag~~L~~~gv~~~~f~syg~rRgn~~vm~rg~  722 (888)
T 2b3y_A          644 SPPFFENLTLDLQP-PKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAVMARGT  722 (888)
T ss_dssp             CCGGGTTCCSSCCC-CCCEEEEEEEEEBCSCCBHHHHSCCSCCCSSSHHHHHHHHTTCCGGGCCCTGGGTTCHHHHHHTT
T ss_pred             CCCCccccccCCCC-cccccCcEEEEEecCCccccccccCccccCCCHHHHHHHhcCCChHHhccccccccCHHHHhhhc
Confidence            99999999888766 88999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhhhhCCCCCCceeecCCCcccc
Q psy5344         537 FANIRIVNKLVSKPGPKTVHFPSLEEGG  564 (566)
Q Consensus       537 f~n~r~~n~~~~~~g~~t~~~p~~~~~~  564 (566)
                      |+|+|++|+|++++||+|+|+|+|+.|+
T Consensus       723 F~n~r~~n~l~~~~g~~t~~~p~g~~~~  750 (888)
T 2b3y_A          723 FANIRLLNRFLNKQAPQTIHLPSGEILD  750 (888)
T ss_dssp             TCCTTCEETTTTEECSEEEETTTTEEEE
T ss_pred             ccccccccccccccCCceeecCCCcccc
Confidence            9999999999999999999999999875
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A Back     alignment and structure
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1 Back     alignment and structure
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1 Back     alignment and structure
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans} Back     alignment and structure
>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1 Back     alignment and structure
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii} Back     alignment and structure
>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 566
d2b3ya2629 c.83.1.1 (A:2-630) Iron-responsive element binding 1e-124
d2b3ya2629 c.83.1.1 (A:2-630) Iron-responsive element binding 9e-12
d1acoa2527 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain 1e-69
d1l5ja3490 c.83.1.1 (A:373-862) Aconitase B, C-terminal domai 4e-45
d2b3ya1 259 c.8.2.1 (A:631-889) ron-responsive element binding 3e-42
d1acoa1 226 c.8.2.1 (A:529-754) Aconitase A, C-terminal domain 1e-10
>d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding protein 1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 629 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Aconitase iron-sulfur domain
superfamily: Aconitase iron-sulfur domain
family: Aconitase iron-sulfur domain
domain: Iron-responsive element binding protein 1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  375 bits (964), Expect = e-124
 Identities = 247/429 (57%), Positives = 293/429 (68%), Gaps = 26/429 (6%)

Query: 37  GVSSHGVVVTALALHARD-PGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTDLVL 95
           G  SH  ++  L +      GIEAEAVMLGQ IS++LP+VIGY++ GK    VTSTD+VL
Sbjct: 202 GTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTDIVL 261

Query: 96  TITKHLRQLGVVGKFVEFFGPGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQ 155
           TITKHLRQ+GVVGKFVEFFGPGV +LSIADRATI+NMCPEYGAT  FFPVD+ S+ YL Q
Sbjct: 262 TITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVSITYLVQ 321

Query: 156 TSKSPGCTKVSRWRSGQNA---------------RLVGFKGYGLKSQVIEPLNQLGFDVV 200
           T +     K  +                      ++V      +      P      D V
Sbjct: 322 TGRDEEKLKYIKKYLQAVGMFRDFNDPSQDPDFTQVVELDLKTVVPCCSGPKRP--QDKV 379

Query: 201 GFG--------CMTCIGNSGPLDPPIDKLGATGQFEFEGKTYTLKHGSVVIAAITSCTNT 252
                      C+             +       F ++   +TL HGSVVIAAITSCTNT
Sbjct: 380 AVSDMKKDFESCLGAKQGFKGFQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAAITSCTNT 439

Query: 253 SNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRESQVIEPLNQLGFDVVG 312
           SNPSVMLGAGLLAKKAV+AGL+V PYIKTSLSPGSGVVTYYL+ES V+  L+QLGFDVVG
Sbjct: 440 SNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVTYYLQESGVMPYLSQLGFDVVG 499

Query: 313 FGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAY 372
           +GCMTCIGNSGPL  P+V+AI + +LV  GVLSGNRNFEGR+HPNTRANYLASP LVIAY
Sbjct: 500 YGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIAY 559

Query: 373 ALAGTVDIDFEKEPIGTNKQGAPVFLRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGS 432
           A+AGT+ IDFEKEP+G N +G  VFL+DIWP+R EI AVE+Q+VIP MF+EVY +IE  +
Sbjct: 560 AIAGTIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKIETVN 619

Query: 433 NSWRALQAP 441
            SW AL  P
Sbjct: 620 ESWNALATP 628
>d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding protein 1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 629 Back     information, alignment and structure
>d1acoa2 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 527 Back     information, alignment and structure
>d1l5ja3 c.83.1.1 (A:373-862) Aconitase B, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 490 Back     information, alignment and structure
>d2b3ya1 c.8.2.1 (A:631-889) ron-responsive element binding protein 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 259 Back     information, alignment and structure
>d1acoa1 c.8.2.1 (A:529-754) Aconitase A, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 226 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query566
d2b3ya2629 Iron-responsive element binding protein 1, N-termi 100.0
d1acoa2527 Aconitase A, N-terminal domain {Cow (Bos taurus) [ 100.0
d1l5ja3490 Aconitase B, C-terminal domain {Escherichia coli [ 100.0
d2b3ya1 259 ron-responsive element binding protein 1, C-termin 100.0
d1acoa1 226 Aconitase A, C-terminal domain {Cow (Bos taurus) [ 99.58
d1v7la_162 Isopropylmalate isomerase LeuD {Pyrococcus horikos 94.81
>d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding protein 1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Aconitase iron-sulfur domain
superfamily: Aconitase iron-sulfur domain
family: Aconitase iron-sulfur domain
domain: Iron-responsive element binding protein 1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-133  Score=1100.42  Aligned_cols=427  Identities=65%  Similarity=1.013  Sum_probs=398.4

Q ss_pred             CHHHHHhcCCCCCccCCCCCeeEEeccCCcccccCCCCc--------------------------------------chH
Q psy5344           1 MRDAVKSLNGDPQKINPICPSDLVIDHSVQVDFSRSGVS--------------------------------------SHG   42 (566)
Q Consensus         1 ~r~~~~~~g~dp~~inp~~p~~lviDHsv~~d~~~~~~~--------------------------------------~HQ   42 (566)
                      |||+++++|+||++|||.+|++||||||||+|++++.++                                      |||
T Consensus        99 mrda~~~~g~dp~~i~p~~p~~lviDHsv~~~~~~~~~~~~~n~~~e~~rn~er~~fl~w~~~~~~~~~~~pPg~GI~HQ  178 (629)
T d2b3ya2          99 MRDAVKKLGGDPEKINPVCPADLVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKWGSQAFHNMRIIPPGSGIIHQ  178 (629)
T ss_dssp             HHHHHHHTTCCGGGSSCSSCEEEECCSSCCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECTTSCCHHH
T ss_pred             HHHHHHHhCCCccccCCCCcceEEECCCeEeccCCCchhhhhchhhhhhhhHHHHHHHHHHHHHhhcccccccccchhhH
Confidence            899999999999999999999999999999999988774                                      999


Q ss_pred             HHHhhccc-------------------c-----------ccCChHHHHHHHhCCeEEeecCcEEEEEEEcccCCCCChhH
Q psy5344          43 VVVTALAL-------------------H-----------ARDPGIEAEAVMLGQAISLLLPEVIGYKIEGKLSQYVTSTD   92 (566)
Q Consensus        43 v~lE~la~-------------------H-----------~GVGg~ea~~~mlg~~~~~~vPevvgV~L~G~L~~gVtakD   92 (566)
                      |||||||+                   |           |||||+|+|++|+||++||++||||+|+|+|+|++||||||
T Consensus       179 vnlE~la~~v~~~~~~~~pdtlVGtDSHT~~~GalG~lg~GVGg~Eae~amlg~~~~~~vPevvgv~L~G~L~~gVtakD  258 (629)
T d2b3ya2         179 VNLEYLARVVFDQDGYYYPDSLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTD  258 (629)
T ss_dssp             HHHHTTCCSEEEETTEEEECEEEESSGGGGGGGGGTCEEEECCHHHHHHHHTTCCEEEECCCEEEEEEESCCCTTCCHHH
T ss_pred             HHHHHhcccccCCCCeEEeeeEEecCCCccccccccceecCcchHHHHHHHhCCcEEEecCceEEEEEEeccCCCcchhH
Confidence            99999995                   6           99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCccceEEEEccCcccccCccccccccccccccCceEeeecCChhHHHHHhhcCCCcchhhhhhhhhhh
Q psy5344          93 LVLTITKHLRQLGVVGKFVEFFGPGVKELSIADRATISNMCPEYGATVGFFPVDQNSLEYLKQTSKSPGCTKVSRWRSGQ  172 (566)
Q Consensus        93 liL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~~~~~y~  172 (566)
                      |||+|+++||++|++||||||+|||+++||+++|||||||++|||||+||||+|++|++||+.|||+++.+++++  +|.
T Consensus       259 liL~i~~~L~~~G~vgk~VEF~G~gi~~LS~~dRaTI~NMa~E~GAt~gifp~De~T~~YL~~tgR~~~~~~~ve--~y~  336 (629)
T d2b3ya2         259 IVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVSITYLVQTGRDEEKLKYIK--KYL  336 (629)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEESGGGTTSCHHHHHHHHHTHHHHTCSEEECCCCHHHHHHHHHTTCCHHHHHHHH--HHH
T ss_pred             HHHHHHHHhccCCcceEEEEeccccccccCHHHhhhhhhcccccCceEEEEccccchhhhhhhhcccccccchhh--HHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999998887776  999


Q ss_pred             hhhhcCCCCCCC------CcceeeccccCCCccccccccccccCCCCCCCCCCCCCccc---------------------
Q psy5344         173 NARLVGFKGYGL------KSQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIDKLGATG---------------------  225 (566)
Q Consensus       173 ~ad~~~~~~y~~------~~~viei~~DLs~d~v~l~~~~~~~~~v~~~~~p~~~~~~~---------------------  225 (566)
                      ++ |++|+++.+      .++++||  |||+    +      .|.+++|.+|++...+.                     
T Consensus       337 ~a-~~l~~~~~~~d~da~Y~~viei--DLs~----v------eP~VAgP~~P~d~v~l~e~~~~~~~~l~~~~~~~~~~~  403 (629)
T d2b3ya2         337 QA-VGMFRDFNDPSQDPDFTQVVEL--DLKT----V------VPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGFKGFQV  403 (629)
T ss_dssp             HH-HTCCCCTTCGGGCCCCSEEEEE--EGGG----C------CSEEECSSCTTCEEEGGGHHHHHHHHHHSCSBTTBCCC
T ss_pred             HH-HHhhhhccccccccCcceEEEE--ehhH----c------eeecCCCCCccceeECCccCcChhhhhhhhhhhcccch
Confidence            99 999987543      2569999  9982    1      23344555555432221                     


Q ss_pred             ---------ceeecCccceeccceEEEEEeecCCCCCChHHHHHHHHHHHHHHHcCCccCCceeeeecCCcHHHHHHHHH
Q psy5344         226 ---------QFEFEGKTYTLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVAPYIKTSLSPGSGVVTYYLRE  296 (566)
Q Consensus       226 ---------~v~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~llak~Av~~G~kv~p~Vk~~v~PgS~~V~~~l~~  296 (566)
                               .+.+.+....+.+|+|++|||||||||||||+|+||+|||+||+++|++++||||++|+|||++|++||++
T Consensus       404 ~~~~~~~~~~~~~~~~~~~l~~g~V~ia~IgSCTN~s~~dl~~AA~lLa~kaV~~Gl~v~p~Vk~~v~PGS~~V~~~le~  483 (629)
T d2b3ya2         404 APEHHNDHKTFIYDNTEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVTYYLQE  483 (629)
T ss_dssp             CGGGTTCEEEEEETTEEEEEETTBEEEEEECCHHHHTCHHHHHHHHHHHHHHHHTTCCCCTTSEEEECCSSHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhccccccccCCcEEEEEEecCCCCCcHHHHHHHHHHhhhhhhcCCcccceeeEEEeccchhhhHHHHh
Confidence                     12245556789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHhCCCeEecCCccccccCCCCCCccccccccCCceEEEeeecccCCCcCCcCCCcCceeecCHHHHHHHHHcC
Q psy5344         297 SQVIEPLNQLGFDVVGFGCMTCIGNSGPLDPPIVDAIEKNELVVAGVLSGNRNFEGRIHPNTRANYLASPLLVIAYALAG  376 (566)
Q Consensus       297 ~Gll~~L~~aG~~v~~~gCg~CiG~~g~l~~~v~~~i~~g~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG  376 (566)
                      +||+++|+++||+|++|||++||||+|+++++++++|.+|++++++|||+||||+|||||..+++|||||+|||||||+|
T Consensus       484 ~Gl~~~L~~aGf~i~~~GC~~CiGnsGpl~~~~~~~i~~gdl~~~~V~S~NRNFeGR~g~~~~~~yLaSP~lVaA~AiaG  563 (629)
T d2b3ya2         484 SGVMPYLSQLGFDVVGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIAYAIAG  563 (629)
T ss_dssp             TSCHHHHHHTTCCBCCSSCGGGGTCCCCCCHHHHHHHHHHTCCCEEEESSSCCCTTSSCTTCSEEEECCHHHHHHHHHHC
T ss_pred             CCchhhhhhceeEEecccccccCCCCCCCCcchhhhcccCCeeEeeecccCCCCCcCCCCCCCCeEECCHHHHHHHHhce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCccCCCCCCceecccCCCChhhhhHhhhhccCchhhHhhhccccCCCCccccccCCC
Q psy5344         377 TVDIDFEKEPIGTNKQGAPVFLRDIWPSRSEIHAVEKQHVIPAMFREVYARIENGSNSWRALQAPE  442 (566)
Q Consensus       377 ~I~~d~~~dplg~~~~G~~v~l~diwP~~~Ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~~  442 (566)
                      +|++|+.+||||+|++|++|||+||||+.+||++++.++++|++|++.|.++++|+++|+.|++|+
T Consensus       564 ~I~id~~~eplg~~~~G~~V~L~diwPs~~Ei~~~~~~~v~~~~f~~~y~~v~~g~~~W~~l~~p~  629 (629)
T d2b3ya2         564 TIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKIETVNESWNALATPS  629 (629)
T ss_dssp             BSCCCTTTSCSEEETTTEEECHHHHCCCHHHHHHHHHHHCCHHHHHHHHTTTTTCCHHHHHCCCCC
T ss_pred             eeecCCCcCCCccCCCCCEEecCCCCCCHHHHHHHHHhccChhhhHHHHHHhccCChhhccCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999998873
>d1acoa2 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1l5ja3 c.83.1.1 (A:373-862) Aconitase B, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2b3ya1 c.8.2.1 (A:631-889) ron-responsive element binding protein 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1acoa1 c.8.2.1 (A:529-754) Aconitase A, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1v7la_ c.8.2.1 (A:) Isopropylmalate isomerase LeuD {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure