Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value Query 97
COG0179 266
COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxo
8e-34 pfam01557 207
pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA
8e-29 PRK10691 219
PRK10691, PRK10691, hypothetical protein; Provisio
3e-26 TIGR02303 245
TIGR02303, HpaG-C-term, 4-hydroxyphenylacetate deg
6e-19 PRK15203 429
PRK15203, PRK15203, 4-hydroxyphenylacetate degrada
2e-13 TIGR02305 205
TIGR02305, HpaG-N-term, 4-hydroxyphenylacetate deg
5e-13 PRK12764 500
PRK12764, PRK12764, hypothetical protein; Provisio
3e-11 PRK15203 429
PRK15203, PRK15203, 4-hydroxyphenylacetate degrada
0.001
>gnl|CDD|223257 COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
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Score = 116 bits (293), Expect = 8e-34
Identities = 44/81 (54%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Query: 3 AREHGLPWTVGKGFDTACPVSDFIPEH-EIKDPDDVPLWLKVNGELRQKSTTGDMLFKTG 61
E G PWT KGFDT PV +I EI DP ++PL L+VNGE+RQ+ T DM+F
Sbjct: 154 MEEKGRPWTRAKGFDTFAPVGPWIVTKDEISDPQNLPLSLRVNGEVRQRGNTSDMIFSIP 213
Query: 62 DLISYISQHMTLEPYDLILTG 82
+LI+Y+S+ MTLEP D+ILTG
Sbjct: 214 ELIAYLSRFMTLEPGDVILTG 234
>gnl|CDD|216570 pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA) hydrolase family
Back Show alignment and domain information
Score = 102 bits (256), Expect = 8e-29
Identities = 35/80 (43%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 4 REHGLPWTVGKGFDTACPVSDFIPEH-EIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGD 62
PW K FD P+ +I E+ DP D+ L L+VNGEL Q +T DM+F +
Sbjct: 96 DRDYRPWFRAKSFDGFAPLGPWIVTPDELGDPADLELRLRVNGELVQDGSTADMIFSPAE 155
Query: 63 LISYISQHMTLEPYDLILTG 82
LI+++S+ +TLEP D+ILTG
Sbjct: 156 LIAHLSRFLTLEPGDIILTG 175
This family consists of fumarylacetoacetate (FAA) hydrolase, or fumarylacetoacetate hydrolase (FAH) and it also includes HHDD isomerase/OPET decarboxylase from E. coli strain W. FAA is the last enzyme in the tyrosine catabolic pathway, it hydrolyses fumarylacetoacetate into fumarate and acetoacetate which then join the citric acid cycle. Mutations in FAA cause type I tyrosinemia in humans this is an inherited disorder mainly affecting the liver leading to liver cirrhosis, hepatocellular carcinoma, renal tubular damages and neurologic crises amongst other symptoms. The enzymatic defect causes the toxic accumulation of phenylalanine/tyrosine catabolites. The E. coli W enzyme HHDD isomerase/OPET decarboxylase contains two copies of this domain and functions in fourth and fifth steps of the homoprotocatechuate pathway; here it decarboxylates OPET to HHDD and isomerises this to OHED. The final products of this pathway are pyruvic acid and succinic semialdehyde. This family also includes various hydratases and 4-oxalocrotonate decarboxylases which are involved in the bacterial meta-cleavage pathways for degradation of aromatic compounds. 2-hydroxypentadienoic acid hydratase, encoded by mhpD in E. coli, is involved in the phenylpropionic acid pathway of E. coli and catalyzes the conversion of 2-hydroxy pentadienoate to 4-hydroxy-2-keto-pentanoate and uses a Mn2+ co-factor. OHED hydratase encoded by hpcG in E. coli is involved in the homoprotocatechuic acid (HPC) catabolism. XylI in P. putida is a 4-Oxalocrotonate decarboxylase. Length = 207
>gnl|CDD|182650 PRK10691, PRK10691, hypothetical protein; Provisional
Back Show alignment and domain information
Score = 95.9 bits (239), Expect = 3e-26
Identities = 36/80 (45%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 4 REHGLPWTVGKGFDTACPVSDFIPEHEIK-DPDDVPLWLKVNGELRQKSTTGDMLFKTGD 62
++ G PW K FD +CP+S FIP E DP + L L VNGE+RQ+ T DM+
Sbjct: 112 KKAGQPWEKAKAFDNSCPISGFIPVAEFTGDPQNTTLGLSVNGEVRQQGNTADMIHPIVP 171
Query: 63 LISYISQHMTLEPYDLILTG 82
LI+Y+S+ TL D++LTG
Sbjct: 172 LIAYMSRFFTLRAGDVVLTG 191
>gnl|CDD|131356 TIGR02303, HpaG-C-term, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit
Back Show alignment and domain information
Score = 77.5 bits (191), Expect = 6e-19
Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 14 KGFDTACPVSDFIPE-HEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMT 72
K DT P+ +I + +++DP ++ L VNGEL Q+ T DM+F +LI Y+S+ MT
Sbjct: 145 KNRDTFTPIGPWIVDKEDVEDPMNLWLRTYVNGELTQEGNTSDMIFSVAELIEYLSEFMT 204
Query: 73 LEPYDLILTG 82
LEP D+ILTG
Sbjct: 205 LEPGDVILTG 214
This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related N-terminal domain (TIGR02305). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED). Length = 245
>gnl|CDD|185125 PRK15203, PRK15203, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional
Back Show alignment and domain information
Score = 63.9 bits (155), Expect = 2e-13
Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 14 KGFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMT 72
K D P+ I P+ I DP ++ L VNGELRQ+ TT D++F LI+Y+S+ MT
Sbjct: 325 KSRDGLTPILSTIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSEFMT 384
Query: 73 LEPYDLILTG 82
L P D+I TG
Sbjct: 385 LNPGDMIATG 394
>gnl|CDD|131358 TIGR02305, HpaG-N-term, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit
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Score = 61.3 bits (149), Expect = 5e-13
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 13 GKGFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMT 72
K D CP+ +P I +PD++ ++ +NG+ Q + T +++ LIS +S+ MT
Sbjct: 108 AKCRDGFCPIGPEVPLSAIGNPDELTIYTYINGKPAQSNNTSNLVRSAAQLISELSEFMT 167
Query: 73 LEPYDLILTGKAG 85
L P D++L G
Sbjct: 168 LNPGDVLLLGTPE 180
This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related C-terminal domain (TIGR02303). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED). Length = 205
>gnl|CDD|237193 PRK12764, PRK12764, hypothetical protein; Provisional
Back Show alignment and domain information
Score = 57.8 bits (140), Expect = 3e-11
Identities = 28/69 (40%), Positives = 38/69 (55%)
Query: 14 KGFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTL 73
KG D P+ + DP + + VNGEL Q TT D+LF L++ +SQ +TL
Sbjct: 123 KGGDGFTPIGPALISARGVDPAQLRVRTWVNGELVQDDTTEDLLFPFAQLVADLSQLLTL 182
Query: 74 EPYDLILTG 82
E D+ILTG
Sbjct: 183 EEGDVILTG 191
>gnl|CDD|185125 PRK15203, PRK15203, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional
Back Show alignment and domain information
Score = 35.8 bits (82), Expect = 0.001
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 9 PWTVGKGFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYIS 68
P K D CP+ + + + + D++ ++ ++NG T D+ L+S +S
Sbjct: 105 PAIKAKCRDGFCPIGETVA---LSNVDNLTIYTEINGRPADHWNTADLQRNAAQLLSALS 161
Query: 69 QHMTLEPYDLILTG 82
+ TL P D IL G
Sbjct: 162 EFATLNPGDAILLG 175
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
97
COG0179 266
MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-en
100.0 KOG1535|consensus 217
100.0 TIGR02303 245
HpaG-C-term 4-hydroxyphenylacetate degradation bif
99.97 PRK15203 429
4-hydroxyphenylacetate degradation bifunctional is
99.97 PRK10691 219
hypothetical protein; Provisional
99.97 PRK12764 500
hypothetical protein; Provisional
99.95 PRK15203 429
4-hydroxyphenylacetate degradation bifunctional is
99.95 TIGR02305 205
HpaG-N-term 4-hydroxyphenylacetate degradation bif
99.94 PF01557 218
FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase
99.92 PLN02856 424
fumarylacetoacetase
99.9 TIGR01266 415
fum_ac_acetase fumarylacetoacetase. This enzyme ca
99.89 TIGR03220 255
catechol_dmpE 2-oxopent-4-enoate hydratase. Member
99.72 PRK11342 262
mhpD 2-keto-4-pentenoate hydratase; Provisional
99.66 TIGR02312 267
HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase. T
99.45 TIGR03218 263
catechol_dmpH 4-oxalocrotonate decarboxylase. Memb
99.06 COG3971 264
2-keto-4-pentenoate hydratase [Secondary metabolit
98.82 KOG2843|consensus 420
98.28 COG3970 379
Fumarylacetoacetate (FAA) hydrolase family protein
97.88 PF11010 194
DUF2848: Protein of unknown function (DUF2848); In
97.15 cd01617 80
DCX Ubiquitin-like domain of DCX. DCX The ubiquiti
89.5 PRK06488 65
sulfur carrier protein ThiS; Validated
83.49 KOG1379|consensus 330
80.04
>COG0179 MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
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Probab=100.00 E-value=2.4e-37 Score=227.06 Aligned_cols=96 Identities=46% Similarity=0.799 Sum_probs=91.9
Q ss_pred Chhh--hcCCCcccccCCCCCcccCCcc-cCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCC
Q psy538 1 KHAR--EHGLPWTVGKGFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYD 77 (97)
Q Consensus 1 ~~~~--~~~~~w~~aK~~d~~~~lGp~v-~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGD 77 (97)
|++| ++++||.++|+||+|||+|||+ +.+++.++.++.|+++||||++|+++|++|+|++++||+|+|+++||+|||
T Consensus 150 Rd~Q~~~~~~~w~~aK~~d~~~Pigp~iv~~~e~~d~~~l~l~~~vNGe~~Q~g~t~~Mi~~i~~lI~~lS~~~tL~pGD 229 (266)
T COG0179 150 RDLQMEEKGRPWTRAKGFDTFAPVGPWIVTKDEISDPQNLPLSLRVNGEVRQRGNTSDMIFSIPELIAYLSRFMTLEPGD 229 (266)
T ss_pred hcchhhhhcCCcccccccCCCCCceeEEeccccCCCCccceEEEEECCEEEecCcHHHcccCHHHHHHHHhCCcccCCCC
Confidence 6888 8999999999999999999997 678888899999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCcccccCCCcc
Q psy538 78 LILTGKAGFILMFQQSPHS 96 (97)
Q Consensus 78 vI~tGTp~g~~~~~~g~~~ 96 (97)
||+||||+|++.+++||+.
T Consensus 230 vI~TGTP~Gvg~l~~GD~v 248 (266)
T COG0179 230 VILTGTPSGVGFLKPGDVV 248 (266)
T ss_pred EEEeCCCCCcccCCCCCEE
Confidence 9999999999999999964
>KOG1535|consensus
Back Show alignment and domain information
Probab=100.00 E-value=1.5e-34 Score=203.75 Aligned_cols=95 Identities=48% Similarity=0.790 Sum_probs=91.3
Q ss_pred hhhhcCCCcccccCCCCCcccCCcccCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCCEEEc
Q psy538 2 HAREHGLPWTVGKGFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILT 81 (97)
Q Consensus 2 ~~~~~~~~w~~aK~~d~~~~lGp~v~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGDvI~t 81 (97)
+.+++|.||..||+||+|||+|++++.+.++|+.++.+.++|||+.+|+++|++|+|+++.+|+|+|+++||+|||||+|
T Consensus 106 ~ak~~g~pw~l~K~~Dtf~Pis~~vpk~~v~Dp~nl~L~l~VnG~~~Q~g~T~~mifkip~li~~is~~~tL~~GDvILT 185 (217)
T KOG1535|consen 106 EAKKKGLPWTLGKGFDTFTPISAIVPKEKVPDPHNLWLWLRVNGETRQTGNTSLMIFKIPDLISRLSQIMTLEPGDVILT 185 (217)
T ss_pred hhhhcCCCeeeccccCccCcccccccHHHCCCccceEEEEEEccEEEecCchhhheecHHHHHHHHhhheeecCCCEEEe
Confidence 45678999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccCCCcc
Q psy538 82 GKAGFILMFQQSPHS 96 (97)
Q Consensus 82 GTp~g~~~~~~g~~~ 96 (97)
|||.|++++++||+.
T Consensus 186 GTP~GVg~v~~Gd~i 200 (217)
T KOG1535|consen 186 GTPEGVGEVKPGDVI 200 (217)
T ss_pred cCCCccccccCCCEE
Confidence 999999999999964
>TIGR02303 HpaG-C-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit
Back Show alignment and domain information
Probab=99.97 E-value=2.3e-32 Score=198.61 Aligned_cols=96 Identities=35% Similarity=0.479 Sum_probs=89.7
Q ss_pred Chhhhc-CCCcccccCCCCCcccCCcc-cCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCCE
Q psy538 1 KHAREH-GLPWTVGKGFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDL 78 (97)
Q Consensus 1 ~~~~~~-~~~w~~aK~~d~~~~lGp~v-~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGDv 78 (97)
|++|++ ++||.++|+||+|||+|||+ +++++.|+.++.+++++||+++|++++++|+|++.+||+|+|++++|+||||
T Consensus 131 Rd~q~~~~~~~~~aK~~D~~~plGp~i~t~~~~~d~~~l~i~l~vNGe~~q~g~t~~ml~~v~~Li~~ls~~~tL~pGDv 210 (245)
T TIGR02303 131 RDYLENYYRPNLRVKNRDTFTPIGPWIVDKEDVEDPMNLWLRTYVNGELTQEGNTSDMIFSVAELIEYLSEFMTLEPGDV 210 (245)
T ss_pred HHHHhhhcCCcccccCCCCCEeeCCcCCCHHHcCCccccEEEEEECCEEEEecCHHHhccCHHHHHHHHhcCCCcCCCCE
Confidence 456644 78999999999999999997 5788888999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCcccccCCCcc
Q psy538 79 ILTGKAGFILMFQQSPHS 96 (97)
Q Consensus 79 I~tGTp~g~~~~~~g~~~ 96 (97)
|+||||.+++++++||+.
T Consensus 211 IlTGTp~g~~~l~~GD~v 228 (245)
T TIGR02303 211 ILTGTPKGLSDVKPGDVV 228 (245)
T ss_pred EEcCCCCCCeEcCCCCEE
Confidence 999999999999999975
This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related N-terminal domain (TIGR02305). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).
>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional
Back Show alignment and domain information
Probab=99.97 E-value=1e-31 Score=207.91 Aligned_cols=91 Identities=23% Similarity=0.322 Sum_probs=84.2
Q ss_pred hhhhcCCCcccccCCCCCcccCCcccCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCCEEEc
Q psy538 2 HAREHGLPWTVGKGFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILT 81 (97)
Q Consensus 2 ~~~~~~~~w~~aK~~d~~~~lGp~v~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGDvI~t 81 (97)
++|. ++||.++|+||+|||+|||+.. +++.+++|+++|||+++|++++++|+|++++||+|+|+++||+|||||+|
T Consensus 99 d~q~-~~~~~~~K~~D~~~p~Gp~i~~---~~~~~l~i~~~vNGe~~Q~~~t~~Mi~~~~~lis~lS~~~tL~pGDvI~T 174 (429)
T PRK15203 99 EESF-YRPAIKAKCRDGFCPIGETVAL---SNVDNLTIYTEINGRPADHWNTADLQRNAAQLLSALSEFATLNPGDAILL 174 (429)
T ss_pred hhcc-cCCcccccCCCCCcccCCeEEC---CCccceEEEEEECCEEEecCCHHHcCCCHHHHHHHHhCCCCcCCCCEEEc
Confidence 4443 5799999999999999999853 35788999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccCCCcc
Q psy538 82 GKAGFILMFQQSPHS 96 (97)
Q Consensus 82 GTp~g~~~~~~g~~~ 96 (97)
|||+|++.+++||+.
T Consensus 175 GTP~g~~~l~~GD~v 189 (429)
T PRK15203 175 GTPQARVEIQPGDRV 189 (429)
T ss_pred CCCCCceECCCCCEE
Confidence 999999999999985
>PRK10691 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=99.97 E-value=2e-30 Score=185.78 Aligned_cols=91 Identities=41% Similarity=0.688 Sum_probs=85.3
Q ss_pred cCCCcccccCCCCCcccCCcccCCCC-CCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCCEEEcCCC
Q psy538 6 HGLPWTVGKGFDTACPVSDFIPEHEI-KDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILTGKA 84 (97)
Q Consensus 6 ~~~~w~~aK~~d~~~~lGp~v~~~~~-~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGDvI~tGTp 84 (97)
+++||.++|+||+|||+|||++.+++ .|+.++++++++||+++|++++++|+|+++++|+|+|++++|+|||||+||||
T Consensus 114 ~~~~~~~~K~~D~~~~~gp~i~~~~~~~d~~~l~i~l~vNG~~~q~g~~~~mi~~~~~lia~ls~~~tL~aGDvI~TGTp 193 (219)
T PRK10691 114 AGQPWEKAKAFDNSCPISGFIPVAEFTGDPQNTTLGLSVNGEVRQQGNTADMIHPIVPLIAYMSRFFTLRAGDVVLTGTP 193 (219)
T ss_pred ccCCccccccCCCCcCcCCcEEchhccCCccccEEEEEECCEEEEecCHHHhccCHHHHHHHHhcCCccCCCCEEEcCCC
Confidence 46799999999999999999855554 57889999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCcc
Q psy538 85 GFILMFQQSPHS 96 (97)
Q Consensus 85 ~g~~~~~~g~~~ 96 (97)
.+++++++||++
T Consensus 194 ~g~~~l~~GD~v 205 (219)
T PRK10691 194 EGVGPLQSGDEL 205 (219)
T ss_pred CCCEECCCCCEE
Confidence 999999999985
>PRK12764 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=99.95 E-value=5.1e-28 Score=190.15 Aligned_cols=88 Identities=32% Similarity=0.355 Sum_probs=83.9
Q ss_pred CCcccccCCCCCcccCCcc-cCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCCEEEcCCCCC
Q psy538 8 LPWTVGKGFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILTGKAGF 86 (97)
Q Consensus 8 ~~w~~aK~~d~~~~lGp~v-~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGDvI~tGTp~g 86 (97)
.+|.++|+||+|||+|||+ +.+++ |+.++++++++||+++|++++++|+|++.+||+|||++++|+|||||+||||.|
T Consensus 117 ~~~~~~K~~Dg~~plGp~iv~~~~~-d~~~l~i~~~vNGe~~Q~g~t~dmi~~v~~LI~~lS~~~tL~pGDvIlTGTp~g 195 (500)
T PRK12764 117 GSNLRSKGGDGFTPIGPALISARGV-DPAQLRVRTWVNGELVQDDTTEDLLFPFAQLVADLSQLLTLEEGDVILTGTPAG 195 (500)
T ss_pred CCcccccccCccEecCCCccCcccc-CccceEEEEEECCEEEEeccHHHhcCCHHHHHHHHhcCCCcCCCCEEEeCCCCC
Confidence 4789999999999999986 67777 899999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcc
Q psy538 87 ILMFQQSPHS 96 (97)
Q Consensus 87 ~~~~~~g~~~ 96 (97)
++++++||+.
T Consensus 196 ~~~l~pGD~v 205 (500)
T PRK12764 196 SSVAAPGDVV 205 (500)
T ss_pred CeecCCCCEE
Confidence 9999999975
>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional
Back Show alignment and domain information
Probab=99.95 E-value=5.4e-28 Score=187.17 Aligned_cols=95 Identities=36% Similarity=0.436 Sum_probs=88.4
Q ss_pred hhhh-cCCCcccccCCCCCcccCCcc-cCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCCEE
Q psy538 2 HARE-HGLPWTVGKGFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLI 79 (97)
Q Consensus 2 ~~~~-~~~~w~~aK~~d~~~~lGp~v-~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGDvI 79 (97)
++|+ .+.+|.++|+||+|||+|||+ +.+++.|+.++.+++++||+++|++++++|+|++.++|+|+|++++|+|||+|
T Consensus 312 d~q~~~~~~w~~~K~~d~~~plGp~~v~~d~~~d~~~l~i~l~vNG~~vq~g~t~~m~~~v~~li~~ls~~~tL~aGDvI 391 (429)
T PRK15203 312 DYLENYYRPNLRVKSRDGLTPILSTIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSEFMTLNPGDMI 391 (429)
T ss_pred hhhhhhcCCceEeccCCCCcCCCCCEeChhhcCCccceEEEEEECCEEEEeeCHHHhccCHHHHHHHHhcCCCcCCCCEE
Confidence 4443 367999999999999999986 77878899999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCcccccCCCcc
Q psy538 80 LTGKAGFILMFQQSPHS 96 (97)
Q Consensus 80 ~tGTp~g~~~~~~g~~~ 96 (97)
+||||.|++++++||++
T Consensus 392 ~TGTp~g~~~l~pGD~v 408 (429)
T PRK15203 392 ATGTPKGLSDVVPGDEV 408 (429)
T ss_pred EeCCCCCCeECCCCCEE
Confidence 99999999999999975
>TIGR02305 HpaG-N-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit
Back Show alignment and domain information
Probab=99.94 E-value=3.4e-27 Score=167.24 Aligned_cols=91 Identities=26% Similarity=0.403 Sum_probs=86.3
Q ss_pred cCCCcccccCCCCCcccCCcccCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCCEEEcCCCC
Q psy538 6 HGLPWTVGKGFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILTGKAG 85 (97)
Q Consensus 6 ~~~~w~~aK~~d~~~~lGp~v~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGDvI~tGTp~ 85 (97)
+..+|..+|+||+++++|||++.+++.|+.++.+++++||+.+|++++++|+|++.+||+|+|++++|+|||||+||||.
T Consensus 101 ~~~~~~~~k~~dg~~~lGp~v~~~~~~d~~~~~~~l~vng~~~~~g~~~~~~~~~~~li~~ls~~~~L~aGdvI~TGT~~ 180 (205)
T TIGR02305 101 YYRPAIKAKCRDGFCPIGPEVPLSAIGNPDELTIYTYINGKPAQSNNTSNLVRSAAQLISELSEFMTLNPGDVLLLGTPE 180 (205)
T ss_pred ccCcchhhcccCCccccCCcccHHHcCCccccEEEEEECCEEEEeeCHHHhCcCHHHHHHHHhCCCCcCCCCEEEeCCCC
Confidence 35689999999999999999877787789999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCcc
Q psy538 86 FILMFQQSPHS 96 (97)
Q Consensus 86 g~~~~~~g~~~ 96 (97)
++.++++||++
T Consensus 181 g~~~l~~Gd~v 191 (205)
T TIGR02305 181 ARVEVGPGDRV 191 (205)
T ss_pred CCeecCCCCEE
Confidence 99999999975
This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related C-terminal domain (TIGR02303). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).
>PF01557 FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase family Mutations in Swiss:P16930 cause inherited tyrosinemia type I
Back Show alignment and domain information
Probab=99.92 E-value=7.8e-26 Score=160.66 Aligned_cols=90 Identities=36% Similarity=0.592 Sum_probs=81.2
Q ss_pred CCCcccccCCCCCcccCCcc-cCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCCEEEcCCCC
Q psy538 7 GLPWTVGKGFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILTGKAG 85 (97)
Q Consensus 7 ~~~w~~aK~~d~~~~lGp~v-~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGDvI~tGTp~ 85 (97)
+.+|..+|+||+++++|||+ +++++.++.++++++++||+.+|++++++|++++.++|+|+|+.++|+|||+|+||||.
T Consensus 106 ~~~~~~~k~~~~~~~~Gp~~v~~~~~~~~~~~~~~l~vnG~~~~~~~~~~~~~~~~~ll~~ls~~~~L~aGdvI~TGt~~ 185 (218)
T PF01557_consen 106 GLPWIADKSFDGSLVLGPWVVPPDELPDLRDLRLRLRVNGEVVQSGSTSDMLGDPAELLAWLSRGLTLRAGDVILTGTPT 185 (218)
T ss_dssp THSSHHHHSSTTCEEEEEEEEEHSSHSGTTSEEEEEEETTEEEEEEEGGGBSSSHHHHHHHHHTTS-B-TTEEEEEEESS
T ss_pred ccchhhccCcCcceeecccccccccccCcceEEEEEEECCEEEEeccchhHHhhHHHHHHHHhCCCCCCcceEEEcCCcC
Confidence 44899999999999999997 78888788999999999999999999999999999999999999999999999999998
Q ss_pred Ccc------cccCCCcc
Q psy538 86 FIL------MFQQSPHS 96 (97)
Q Consensus 86 g~~------~~~~g~~~ 96 (97)
|+. .+++||++
T Consensus 186 G~~~~~~~~~l~~Gd~v 202 (218)
T PF01557_consen 186 GVGARPPPVPLQPGDRV 202 (218)
T ss_dssp TSEGSSCCEEEBTT-EE
T ss_pred CCCcccccccCCCCcEE
Confidence 765 89999975
; InterPro: IPR002529 Fumarylacetoacetase (3.7.1.2 from EC; also known as fumarylacetoacetate hydrolase or FAH) catalyses the hydrolytic cleavage of a carbon-carbon bond in fumarylacetoacetate to yield fumarate and acetoacetate as the final step in phenylalanine and tyrosine degradation []. This is an essential metabolic function in humans, the lack of FAH causing type I tyrosinaemia, which is associated with liver and kidney abnormalities and neurological disorders [, ]. The enzyme mechanism involves a catalytic metal ion, a Glu/His catalytic dyad, and a charged oxyanion hole []. FAH folds into two domains: an N-terminal domain SH3-like beta-barrel, and a C-terminal with an unusual fold consisting of three layers of beta-sheet structures []. This entry represents the C-terminal domain of fumarylacetoacetase, as well as other domains that share a homologous sequence, including: 5-carboxymethyl-2-hydroxymuconate delta-isomerase (CHM isomerase; 5.3.3.10 from EC), which catalyses the conversion of 5-carboxymethyl-2-hydroxymuconate to 5-carboxy-2-oxohept-3-enedioate []. 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase (OPET decarboxylase; 4.1.1.68 from EC), which catalyses the conversion of 5-oxopent-3-ene-1,2,5-tricarboxylate to 2-oxohept-3-enedioate and carbon dioxide. Bifunctional enzyme HpcE (OPET decarboxylase 4.1.1.68 from EC/HHDD isomerase 5.3.3.10 from EC), which is a duplication consisting of a tandem repeat of two FAH C-terminal-like domains. This enzyme is responsible for the degradation of 4-hydroxyphenylacetate, a product of tyrosine and phenylalanine metabolism also released by lignin catabolism []. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1SAW_B 3LZK_B 3S52_B 2WQT_Q 1SV6_C 2DFU_B 1WZO_D 3QDF_A 1GTT_B 1I7O_C ....
>PLN02856 fumarylacetoacetase
Back Show alignment and domain information
Probab=99.90 E-value=1.4e-23 Score=162.09 Aligned_cols=93 Identities=16% Similarity=0.163 Sum_probs=75.4
Q ss_pred Chhhh---cCCCcccccCCCCCcccCCcc-cCCCCC--------------------CCCceeEEEEE--------CCEEE
Q psy538 1 KHARE---HGLPWTVGKGFDTACPVSDFI-PEHEIK--------------------DPDDVPLWLKV--------NGELR 48 (97)
Q Consensus 1 ~~~~~---~~~~w~~aK~~d~~~~lGp~v-~~~~~~--------------------d~~~~~i~~~v--------NG~~~ 48 (97)
|++|+ ....|.++|+||++ +|||| +.+++. +..++.|.++| ||+++
T Consensus 244 RDiQ~wE~~plgpf~gKsF~t~--igPwIVt~dal~p~r~~~~~~dp~~l~yl~~~~~~~~~i~l~v~v~~nG~~ng~~~ 321 (424)
T PLN02856 244 RDIQKWEYVPLGPFLGKSFATT--ISPWIVTLDALEPFRCDAPAQDPPPLPYLAEKNRKSYDISLEVAIKPAGQSKASVV 321 (424)
T ss_pred hhhhhhhcccCCcccccCCCCC--CcCeEEcccccccccccccccCcccccccccccccceeEEEEEEEeeCCcccceeE
Confidence 45554 23467799999875 99997 677763 12245666666 66899
Q ss_pred EeccCCccCCCHHHHHHH-HHcccccCCCCEEEcCCCCCcccccCCCc
Q psy538 49 QKSTTGDMLFKTGDLISY-ISQHMTLEPYDLILTGKAGFILMFQQSPH 95 (97)
Q Consensus 49 q~~~t~~m~~~~~~li~~-lS~~~tL~pGDvI~tGTp~g~~~~~~g~~ 95 (97)
|++++++|+|+++++|+| +|++++|+|||||+||||+|++++..|+.
T Consensus 322 q~~nt~~M~ws~~qlIah~~s~g~tL~pGDLi~TGTpsG~~~~~~G~l 369 (424)
T PLN02856 322 CRSNFKHLYWTLAQQLAHHTVNGCNLRPGDLLGSGTISGPEPGSLGCL 369 (424)
T ss_pred EcCCHHHcCCCHHHHHHHHHhCCeecCCCCEEEeCCCCCCccCCCCCE
Confidence 999999999999999996 68999999999999999999999888874
>TIGR01266 fum_ac_acetase fumarylacetoacetase
Back Show alignment and domain information
Probab=99.89 E-value=4e-23 Score=159.31 Aligned_cols=85 Identities=21% Similarity=0.212 Sum_probs=74.1
Q ss_pred CcccccCCCCCcccCCcc-cCCCCCC---------C-------------CceeEEEEECCE------EEEeccCCccCCC
Q psy538 9 PWTVGKGFDTACPVSDFI-PEHEIKD---------P-------------DDVPLWLKVNGE------LRQKSTTGDMLFK 59 (97)
Q Consensus 9 ~w~~aK~~d~~~~lGp~v-~~~~~~d---------~-------------~~~~i~~~vNG~------~~q~~~t~~m~~~ 59 (97)
.|.++|+||++ +|||| +.|++.+ + .++.+++++||+ ++|++++++|+|+
T Consensus 247 gpf~~KsF~ts--igPwIVT~daL~p~r~~~~~~dp~pl~yL~~~~~~~~~l~l~v~vnge~~~~~~~~q~~~~~~M~ws 324 (415)
T TIGR01266 247 GPFLAKSFGTT--ISPWVVPIDALEPFRVPNPKQDPKPLPYLCHDAPYTFDINLEVSLKGEGMSEPATICRSNFKHMYWT 324 (415)
T ss_pred CccccccCCCC--CcCeEeccccccccccccccccccccccccccCCCcceeEEEEEEecCcCcccceEEcCCHHhcCcC
Confidence 35599999996 99997 6787631 1 267888889987 7999999999999
Q ss_pred HHHHHHHHH-cccccCCCCEEEcCCCCCcccccCCCc
Q psy538 60 TGDLISYIS-QHMTLEPYDLILTGKAGFILMFQQSPH 95 (97)
Q Consensus 60 ~~~li~~lS-~~~tL~pGDvI~tGTp~g~~~~~~g~~ 95 (97)
++|+|+|+| ++++|+|||||+||||+|+++.+.|+.
T Consensus 325 ~~qlIah~S~~g~tL~pGDLi~TGTpsG~~~~~~G~~ 361 (415)
T TIGR01266 325 MLQQLAHHSVNGCNLRPGDLLGSGTISGSEPGSFGSM 361 (415)
T ss_pred HHHHHHHHhcCCcccCCCCEEEeCCCCCCcccCCCcE
Confidence 999999999 689999999999999999999888874
This enzyme catalyzes the final step in the breakdown of tyrosine or phenylalanine to fumarate and acetoacetate.
>TIGR03220 catechol_dmpE 2-oxopent-4-enoate hydratase
Back Show alignment and domain information
Probab=99.72 E-value=1.6e-17 Score=121.26 Aligned_cols=88 Identities=15% Similarity=0.197 Sum_probs=68.5
Q ss_pred CCcccccCCCC-CcccCCccc-CCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHc-----ccccCCCCEEE
Q psy538 8 LPWTVGKGFDT-ACPVSDFIP-EHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQ-----HMTLEPYDLIL 80 (97)
Q Consensus 8 ~~w~~aK~~d~-~~~lGp~v~-~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~-----~~tL~pGDvI~ 80 (97)
.+|..||+.-+ ...+|+.+. ++.+ +...+.+++++||+.+|++++++|+++|.++|+||++ +++|+|||+|+
T Consensus 147 ~~~~~Ad~~~~~~~V~g~~~~~~~~~-~l~~~~~~l~vnG~~~~~g~~~~~lg~p~~~l~~L~~~l~~~g~~L~aGdiV~ 225 (255)
T TIGR03220 147 IQDTVADNASCGVFVLGDTRVDPRKL-DLALCGMVLEKNGEIVSTGAGAAALGSPVNAVAWLANTLGRLGIPLKAGEVIL 225 (255)
T ss_pred ccceeeecCCcceEEECCCcCCcccc-ChhhCceEEEECCEEEeecchhhccCCHHHHHHHHHHHHHHcCCCCCCCCEEE
Confidence 46777776211 122333321 1222 3455667899999999999999999999999999997 88999999999
Q ss_pred cCCCCCcccccCCCcc
Q psy538 81 TGKAGFILMFQQSPHS 96 (97)
Q Consensus 81 tGTp~g~~~~~~g~~~ 96 (97)
||||.++.++++||++
T Consensus 226 TGt~~g~~~v~~Gd~v 241 (255)
T TIGR03220 226 SGSLAALVPVKAGDNL 241 (255)
T ss_pred CCCCCCCeeCCCCCEE
Confidence 9999999999999975
Members of this protein family are 2-oxopent-4-enoate hydratase, which is also called 2-hydroxypent-2,4-dienoate hydratase. It is closely related to another gene found in the same operon, 4-oxalocrotonate decarboxylase, with which it interacts closely.
>PRK11342 mhpD 2-keto-4-pentenoate hydratase; Provisional
Back Show alignment and domain information
Probab=99.66 E-value=1.6e-16 Score=116.43 Aligned_cols=77 Identities=14% Similarity=0.164 Sum_probs=67.6
Q ss_pred CcccCCcc-cCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcc-----cccCCCCEEEcCCCCCcccccC
Q psy538 19 ACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQH-----MTLEPYDLILTGKAGFILMFQQ 92 (97)
Q Consensus 19 ~~~lGp~v-~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~-----~tL~pGDvI~tGTp~g~~~~~~ 92 (97)
...+|+.+ ..+++ |+.++.+++++||+.+|++++++|+++|.++|+||++. ++|+|||||+||||.++.++++
T Consensus 163 ~~VlG~~~~~~~~~-d~~~~~~~l~vng~~~q~g~~~~~lg~p~~~l~~L~~~l~~~g~~L~aGdvV~TGt~~~~~~l~~ 241 (262)
T PRK11342 163 VYVIGGPAQRPAGL-DLKNCAMKMTRNNEEVSSGRGSECLGHPLNAAVWLARKMASLGEPLRAGDIILTGALGPMVAVNA 241 (262)
T ss_pred eEEECCCcCCcccC-ChhhCEEEEEECCEEEEEEcHHHhccCHHHHHHHHHHHHHHcCCCcCCCCEEEcCCCCCCeeCCC
Confidence 34567654 34444 77889999999999999999999999999999999876 6999999999999999999999
Q ss_pred CCcc
Q psy538 93 SPHS 96 (97)
Q Consensus 93 g~~~ 96 (97)
||++
T Consensus 242 Gd~v 245 (262)
T PRK11342 242 GDRF 245 (262)
T ss_pred CCEE
Confidence 9975
>TIGR02312 HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase
Back Show alignment and domain information
Probab=99.45 E-value=1.7e-13 Score=100.79 Aligned_cols=76 Identities=14% Similarity=0.126 Sum_probs=66.9
Q ss_pred cccCCcc-cCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcc-----cccCCCCEEEcCCCCCcccccCC
Q psy538 20 CPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQH-----MTLEPYDLILTGKAGFILMFQQS 93 (97)
Q Consensus 20 ~~lGp~v-~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~-----~tL~pGDvI~tGTp~g~~~~~~g 93 (97)
..+|+.+ .++++ |+..+.+++++||+.+++|++++|+.+|.+.|+||++. .+|++||+|+|||+.++.++++|
T Consensus 171 ~v~G~~~~~~~~~-dl~~~~~~l~~nG~~~~~g~~~~~lg~P~~al~wL~~~l~~~G~~L~aGdiV~TGs~~~~~~v~~G 249 (267)
T TIGR02312 171 IVLGGRPVRPDAL-DLRWVGAILYRNGVVEETGLAAGVLNHPANGVAWLANKLAPWGETLEAGQVVLAGSFTRPVAARSG 249 (267)
T ss_pred EEECCCCCCcccc-ChhhcccEEEECCEEEEEechhhhcCCHHHHHHHHHHHHHHcCCCCCCCCEEECCCCCCceecCCC
Confidence 3778853 45554 77888899999999999999999999999999999864 59999999999999999999999
Q ss_pred Ccc
Q psy538 94 PHS 96 (97)
Q Consensus 94 ~~~ 96 (97)
+++
T Consensus 250 ~~~ 252 (267)
T TIGR02312 250 DTF 252 (267)
T ss_pred CEE
Confidence 975
This model represents the enzyme which hydrates the double bond of 2-oxo-hepta-3-ene-1,7-dioic acid to form 4-hydroxy-2-oxo-heptane-1,7-dioic acid in the catabolism of 4-hydroxyphenylacetic acid. The gene for this enzyme is generally found adjacent to other genes of this pathway in an apparent operon.
>TIGR03218 catechol_dmpH 4-oxalocrotonate decarboxylase
Back Show alignment and domain information
Probab=99.06 E-value=7.8e-10 Score=81.27 Aligned_cols=77 Identities=9% Similarity=0.112 Sum_probs=67.4
Q ss_pred CcccCCcc-cCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHc-----ccccCCCCEEEcCCCCCcccccC
Q psy538 19 ACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQ-----HMTLEPYDLILTGKAGFILMFQQ 92 (97)
Q Consensus 19 ~~~lGp~v-~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~-----~~tL~pGDvI~tGTp~g~~~~~~ 92 (97)
...+||.+ ..+.+ |+.++.+++++||+.+++|+.++...+|...+.||.+ +..|++||+|+||+..++.++.+
T Consensus 167 ~~vlG~~~~~~~~~-dl~~~~~~l~~~g~~v~~g~g~~~lG~P~~al~wL~~~l~~~G~~L~aG~iV~tGs~t~~~~v~~ 245 (263)
T TIGR03218 167 RFVTGGRAANVEDL-DLRTLGVVMEKNGEVVAMGAGAAVLGHPAAAVAMLANHLAERGEEIPAGSFIMSGGITEAVAVAP 245 (263)
T ss_pred eEEECCCCCCcccc-CHhhCcEEEEECCEEEEeecccccCCCHHHHHHHHHHHHHHcCCCCCCCCEEECCcCcCceecCC
Confidence 44788875 34443 7788899999999999999999999999999999974 67999999999999999999999
Q ss_pred CCcc
Q psy538 93 SPHS 96 (97)
Q Consensus 93 g~~~ 96 (97)
|+++
T Consensus 246 G~~~ 249 (263)
T TIGR03218 246 GDSV 249 (263)
T ss_pred CCEE
Confidence 9875
Members of this protein family are 4-oxalocrotonate decarboxylase. Note that this protein, as characterized (indirectly) in Pseudomonas sp. strain CF600, was inactive except when coexpressed with DmpE, 2-oxopent-4-enoate hydratase, a homologous protein from the same operon. Both of these enzymes are active in the degradation of catechol, a common intermediate in the degradation of aromatic compounds such as benzoate, toluene, phenol, dimethylphenol (dmp), salicylate, etc.
>COG3971 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism]
Back Show alignment and domain information
Probab=98.82 E-value=8.1e-09 Score=75.80 Aligned_cols=76 Identities=14% Similarity=0.166 Sum_probs=68.7
Q ss_pred cccCC-cccCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHc-----ccccCCCCEEEcCCCCCcccccCC
Q psy538 20 CPVSD-FIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQ-----HMTLEPYDLILTGKAGFILMFQQS 93 (97)
Q Consensus 20 ~~lGp-~v~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~-----~~tL~pGDvI~tGTp~g~~~~~~g 93 (97)
..||| ++.++++ |...+..+++.||+++++|..+..+.+|..-++||++ +.+|+.||||+||.-.+..+.++|
T Consensus 166 ~ViG~~~~~~~~l-d~~~~~~~l~rng~~~e~g~~aavLghP~~a~~wLAn~~a~~G~~Lk~G~IVl~Gs~t~~v~~~~g 244 (264)
T COG3971 166 FVIGGRAVKPDDL-DLRNVGATLYRNGVEEETGVGAAVLGHPAAALAWLANKLAAYGVPLKAGDIVLTGSFTGPVPARPG 244 (264)
T ss_pred eEECCCCCCchhh-hhhhccceeeecCEEEEeeechhhcCCcHHHHHHHHHHHHHcCCCcccCcEEecCccCccccCCCC
Confidence 47886 5666666 7889999999999999999999999999999999984 899999999999999999999999
Q ss_pred Ccc
Q psy538 94 PHS 96 (97)
Q Consensus 94 ~~~ 96 (97)
|+.
T Consensus 245 d~~ 247 (264)
T COG3971 245 DTF 247 (264)
T ss_pred CEE
Confidence 974
>KOG2843|consensus
Back Show alignment and domain information
Probab=98.28 E-value=1.1e-06 Score=66.00 Aligned_cols=77 Identities=25% Similarity=0.298 Sum_probs=57.3
Q ss_pred ccccCCCCCcccCCcc-cCCCCC--------------------CCCceeEEEEEC----C----EEEEeccCCccCCCHH
Q psy538 11 TVGKGFDTACPVSDFI-PEHEIK--------------------DPDDVPLWLKVN----G----ELRQKSTTGDMLFKTG 61 (97)
Q Consensus 11 ~~aK~~d~~~~lGp~v-~~~~~~--------------------d~~~~~i~~~vN----G----~~~q~~~t~~m~~~~~ 61 (97)
+.||+|-+ .++||| +.+.+. +|-.+.|.+.|| | ..++..+...|+|.+.
T Consensus 251 FlaKsfgT--TvSPWVVp~~AL~Pf~v~Np~QdP~plpYL~hd~PftfDINL~Vslkpeg~~~~a~icKsNFKhlYWT~l 328 (420)
T KOG2843|consen 251 FLAKSFGT--TVSPWVVPTAALKPFVVDNPPQDPEPLPYLRHDIPFTFDINLEVSLKPEGQNEDALICKSNFKHLYWTPL 328 (420)
T ss_pred hhhhhccc--ccccceeeHhhcCccccCCCCCCCCCCcccccCCCceeeeeeEEEeccCCccccceeecccchhhhhhHH
Confidence 47999965 789996 433321 122344444442 2 3578889999999999
Q ss_pred HHHHHHH-cccccCCCCEEEcCCCCCccc
Q psy538 62 DLISYIS-QHMTLEPYDLILTGKAGFILM 89 (97)
Q Consensus 62 ~li~~lS-~~~tL~pGDvI~tGTp~g~~~ 89 (97)
+.|++.+ .++.|+|||++.+||.+|..+
T Consensus 329 QQlaHHtVnGCNLRpGDLlaSGTiSGpep 357 (420)
T KOG2843|consen 329 QQLAHHTVNGCNLRPGDLLASGTISGPEP 357 (420)
T ss_pred HHhhhcccccccCCccceeccccccCCCC
Confidence 9999987 689999999999999998765
>COG3970 Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only]
Back Show alignment and domain information
Probab=97.88 E-value=2.2e-05 Score=59.41 Aligned_cols=75 Identities=20% Similarity=0.234 Sum_probs=58.2
Q ss_pred cccccCCCCCcccCCcc-cCCCCCCCCc---eeEEEEECCEE--EEe--ccCCccCCCHHHHHH-HHHcccccCCCCEEE
Q psy538 10 WTVGKGFDTACPVSDFI-PEHEIKDPDD---VPLWLKVNGEL--RQK--STTGDMLFKTGDLIS-YISQHMTLEPYDLIL 80 (97)
Q Consensus 10 w~~aK~~d~~~~lGp~v-~~~~~~d~~~---~~i~~~vNG~~--~q~--~~t~~m~~~~~~li~-~lS~~~tL~pGDvI~ 80 (97)
..+||....+|.+|||| ..||...+.+ .++++.|.||- .-+ .+++.|-+++++++. ++-+.....-|-+++
T Consensus 234 L~kaKdnnasCaiGPfIrlfDe~f~~~dv~~a~vtLkv~gedgf~l~G~snm~~isR~p~~l~~Q~l~~~hqyPDG~~lf 313 (379)
T COG3970 234 LSKAKDNNASCAIGPFIRLFDETFTIDDVKSAEVTLKVTGEDGFFLEGSSNMAEISRSPEELVIQALNRDHQYPDGFALF 313 (379)
T ss_pred cccccccCccccccceEEeecCCCChhhhhhceEEEEEEccCceEEeccccHHhhccCHHHHHHHHhccCCCCCCceeEE
Confidence 35788899999999997 5677655554 44999998874 334 457899998887655 556789999999999
Q ss_pred cCCC
Q psy538 81 TGKA 84 (97)
Q Consensus 81 tGTp 84 (97)
+||.
T Consensus 314 lGTm 317 (379)
T COG3970 314 LGTM 317 (379)
T ss_pred eeee
Confidence 9994
>PF11010 DUF2848: Protein of unknown function (DUF2848); InterPro: IPR021269 This bacterial family of proteins has no known function
Back Show alignment and domain information
Probab=97.15 E-value=0.00063 Score=48.35 Aligned_cols=76 Identities=20% Similarity=0.196 Sum_probs=58.2
Q ss_pred cccCCc-ccCCCCCC-CCceeEEEE--ECCE--EEEeccCCccCCCHHHHHHHHH-cccccCCCCEEEcCCCCCcccccC
Q psy538 20 CPVSDF-IPEHEIKD-PDDVPLWLK--VNGE--LRQKSTTGDMLFKTGDLISYIS-QHMTLEPYDLILTGKAGFILMFQQ 92 (97)
Q Consensus 20 ~~lGp~-v~~~~~~d-~~~~~i~~~--vNG~--~~q~~~t~~m~~~~~~li~~lS-~~~tL~pGDvI~tGTp~g~~~~~~ 92 (97)
.|+++- ...+++.+ .+.+.++.+ .||+ +.|+|+.+.| .+|.+||+.+. ....+.+|-++++||.+-.+.+++
T Consensus 95 Kpva~~~W~~~dV~dhWD~l~Lrsw~~~dg~~~lYQeGtla~l-l~p~~ll~~~~~~~~~~~~g~~m~~GT~~~~g~~~~ 173 (194)
T PF11010_consen 95 KPVAREAWRLDDVADHWDELELRSWITEDGERVLYQEGTLAAL-LPPADLLERLGEGRGDLPEGTAMFCGTVPAIGGIRP 173 (194)
T ss_pred ccchhhcCcHHHHHhhhhheeEEEEEeeCCCEEEEeecchhhc-CCHHHHHHhhhccCCCCCCCEEEEEeccccccCccc
Confidence 477773 24455543 456777666 4665 5799999865 58999999999 678899999999999888888888
Q ss_pred CCcc
Q psy538 93 SPHS 96 (97)
Q Consensus 93 g~~~ 96 (97)
++++
T Consensus 174 a~~f 177 (194)
T PF11010_consen 174 ADRF 177 (194)
T ss_pred cceE
Confidence 8764
>cd01617 DCX Ubiquitin-like domain of DCX
Back Show alignment and domain information
Probab=89.50 E-value=0.41 Score=29.08 Aligned_cols=50 Identities=12% Similarity=0.019 Sum_probs=40.5
Q ss_pred eEEEEECCEEEEecc----CCccCCCHHHHHHHHHcccccCCCCEEEcCCCCCc
Q psy538 38 PLWLKVNGELRQKST----TGDMLFKTGDLISYISQHMTLEPYDLILTGKAGFI 87 (97)
Q Consensus 38 ~i~~~vNG~~~q~~~----t~~m~~~~~~li~~lS~~~tL~pGDvI~tGTp~g~ 87 (97)
.|.++.||+....|. ......+++.++.++++.+.|.+|-|=---||.|.
T Consensus 2 ~I~~~rNGD~~~~g~~~~i~~~~~~sfd~lL~~lt~~l~l~~~~Vr~lyt~~g~ 55 (80)
T cd01617 2 RVVVYRNGDPFFKGVRLLVNRRRFKSFDALLDDLTEKVQLDPGAVRKLYTLDGG 55 (80)
T ss_pred EEEEEECCCCCCCCEEEEEChhhhCCHHHHHHHHHHHhCCCCCcEEEEEcCCCC
Confidence 467888998776664 24567899999999999999999998887788773
DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females.
>PRK06488 sulfur carrier protein ThiS; Validated
Back Show alignment and domain information
Probab=83.49 E-value=3.3 Score=23.73 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=17.1
Q ss_pred EEEEECCEEEEeccCCccCCCHHHHHHHHH
Q psy538 39 LWLKVNGELRQKSTTGDMLFKTGDLISYIS 68 (97)
Q Consensus 39 i~~~vNG~~~q~~~t~~m~~~~~~li~~lS 68 (97)
|++.+||+.++- ..+ ++.+|++++.
T Consensus 1 m~i~~Ng~~~~~---~~~--tl~~Ll~~l~ 25 (65)
T PRK06488 1 MKLFVNGETLQT---EAT--TLALLLAELD 25 (65)
T ss_pred CEEEECCeEEEc---CcC--cHHHHHHHcC
Confidence 467888888775 222 6888887763
>KOG1379|consensus
Back Show alignment and domain information
Probab=80.04 E-value=0.94 Score=34.71 Aligned_cols=52 Identities=19% Similarity=0.226 Sum_probs=40.1
Q ss_pred CCceeEEEEECCEEEEeccCCccCCCHHHHHHHH--------H--------cccccCCCCEEEcCCCC
Q psy538 34 PDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYI--------S--------QHMTLEPYDLILTGKAG 85 (97)
Q Consensus 34 ~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~l--------S--------~~~tL~pGDvI~tGTp~ 85 (97)
+-+-.+.+..||+++++..-.+..|+.+..|+-- + -.+.|++||||+.+|-+
T Consensus 188 LGDSGF~VvR~G~vv~~S~~Q~H~FN~PyQLs~~p~~~~~~~~d~p~~ad~~~~~v~~GDvIilATDG 255 (330)
T KOG1379|consen 188 LGDSGFLVVREGKVVFRSPEQQHYFNTPYQLSSPPEGYSSYISDVPDSADVTSFDVQKGDVIILATDG 255 (330)
T ss_pred ccCcceEEEECCEEEEcCchheeccCCceeeccCCccccccccCCccccceEEEeccCCCEEEEeccc
Confidence 3455677788999999998888888877555433 2 26889999999999964
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 97
d1sawa_ 217
d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Hom
7e-25 d1nkqa_ 257
d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker
2e-15 d1nr9a_ 221
d.177.1.1 (A:) Putative isomerase YcgM {Escherichi
4e-13 d1gtta2 216
d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degra
2e-12 d1hyoa2 298
d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolas
4e-10 d1sv6a_ 261
d.177.1.1 (A:) 2-keto-4-pentenoate hydratase MhpD
4e-07 d1gtta1 213
d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degrada
4e-06
>d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [TaxId: 9606]} Length = 217
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: FAHD1 (Flj36880, YISKL)
species: Human (Homo sapiens) [TaxId: 9606]
Score = 90.9 bits (225), Expect = 7e-25
Identities = 42/81 (51%), Positives = 57/81 (70%)
Query: 2 HAREHGLPWTVGKGFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTG 61
++ GLPWT+ K F +CPVS F+P+ +I DP + LWLKVNGELRQ+ T M+F
Sbjct: 104 ECKKKGLPWTLAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIP 163
Query: 62 DLISYISQHMTLEPYDLILTG 82
+ISY+S+ +TLE D+ILTG
Sbjct: 164 YIISYVSKIITLEEGDIILTG 184
>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 257
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Hypothetical protein Ynl168c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.8 bits (162), Expect = 2e-15
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 2 HAREHGLPWTVGKGFDTACPVSDFIPEHEIKD-----PDDVPLWLKVNGELRQKSTTGDM 56
A++ GLPWT+ KGFDT P+S + + D + VNG+LRQ T M
Sbjct: 129 EAKKKGLPWTISKGFDTFMPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGTNLM 188
Query: 57 LFKTGDLISYISQHMTLEPYDLILTG 82
L ++ +IS ++LEP D+ILTG
Sbjct: 189 LHPLHKILQHISTMISLEPGDIILTG 214
>d1nr9a_ d.177.1.1 (A:) Putative isomerase YcgM {Escherichia coli [TaxId: 562]} Length = 221
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Putative isomerase YcgM
species: Escherichia coli [TaxId: 562]
Score = 60.2 bits (145), Expect = 4e-13
Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 1 KHAREHGLPWTVGKGFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFK 59
++ G PW K FD +CP+S FI DP + L L VNGE RQ+ TT DM+ K
Sbjct: 110 GKMKKAGQPWEKAKAFDNSCPLSGFIPAAEFTGDPQNTTLSLSVNGEQRQQGTTADMIHK 169
Query: 60 TGDLISYISQHMTLEPYDLILTG 82
LI+Y+S+ TL+ D++LTG
Sbjct: 170 IVPLIAYMSKFFTLKAGDVVLTG 192
>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]} Length = 216
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE
species: Escherichia coli [TaxId: 562]
Score = 57.9 bits (139), Expect = 2e-12
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 10 WTVGKGFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQ 69
V +S +P+ I DP ++ L VNGELRQ+ TT D++F LI+Y+S+
Sbjct: 109 LRVKSRDGLTPMLSTIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSE 168
Query: 70 HMTLEPYDLILTG 82
MTL P D+I TG
Sbjct: 169 FMTLNPGDMIATG 181
>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 298
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Fumarylacetoacetate hydrolase, FAH, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.4 bits (125), Expect = 4e-10
Identities = 13/109 (11%), Positives = 27/109 (24%), Gaps = 30/109 (27%)
Query: 4 REHGLPWTVGKGFDTACPVSDFIP-----------------------EHEIKDPDDVPLW 40
+ +P G +S ++ H D+ L
Sbjct: 123 QWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLS 182
Query: 41 L------KVNGELRQKSTTGDMLFKTGDLISYI-SQHMTLEPYDLILTG 82
+ +S M + +++ L P DL+ +G
Sbjct: 183 VSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASG 231
>d1sv6a_ d.177.1.1 (A:) 2-keto-4-pentenoate hydratase MhpD {Escherichia coli [TaxId: 562]} Length = 261
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: 2-keto-4-pentenoate hydratase MhpD
species: Escherichia coli [TaxId: 562]
Score = 43.8 bits (102), Expect = 4e-07
Identities = 11/82 (13%), Positives = 23/82 (28%), Gaps = 5/82 (6%)
Query: 6 HGLPWTVGKGFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLIS 65
+ + D + + + N E + L +
Sbjct: 150 QFVDTVADNASCGVYVIGGPAQRPAGLDLKNCAMKMTRNNEEVSSGRGSECLGHPLNAAV 209
Query: 66 YISQHM-----TLEPYDLILTG 82
++++ M L D+ILTG
Sbjct: 210 WLARKMASLGEPLRTGDIILTG 231
>d1gtta1 d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]} Length = 213
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE
species: Escherichia coli [TaxId: 562]
Score = 40.7 bits (94), Expect = 4e-06
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 2 HAREHGLPWTVGKGFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTG 61
P K D CP+ + + + D++ ++ ++NG T D+
Sbjct: 98 PEESFYRPAIKAKCRDGFCPIGETVALS---NVDNLTIYTEINGRPADHWNTADLQRNAA 154
Query: 62 DLISYISQHMTLEPYDLILTG 82
L+S +S+ TL P D IL G
Sbjct: 155 QLLSALSEFATLNPGDAILLG 175
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 97
d1sawa_ 217
FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [Tax
100.0 d1nr9a_ 221
Putative isomerase YcgM {Escherichia coli [TaxId:
100.0 d1gtta1 213
4-hydroxyphenylacetate degradation bifunctional is
99.98 d1nkqa_ 257
Hypothetical protein Ynl168c {Baker's yeast (Sacch
99.97 d1gtta2 216
4-hydroxyphenylacetate degradation bifunctional is
99.96 d1hyoa2 298
Fumarylacetoacetate hydrolase, FAH, C-terminal dom
99.92 d1sv6a_ 261
2-keto-4-pentenoate hydratase MhpD {Escherichia co
99.43
>d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [TaxId: 9606]}
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: FAHD1 (Flj36880, YISKL)
species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.1e-36 Score=210.93 Aligned_cols=93 Identities=45% Similarity=0.830 Sum_probs=89.7
Q ss_pred hhcCCCcccccCCCCCcccCCcccCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCCEEEcCC
Q psy538 4 REHGLPWTVGKGFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILTGK 83 (97)
Q Consensus 4 ~~~~~~w~~aK~~d~~~~lGp~v~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGDvI~tGT 83 (97)
++++.||.++|+||+|||+||||+.+++.|+.+++|+++|||+++|++++++|+|++++||+|+|++++|+|||||+|||
T Consensus 106 ~~~~~~~~~~K~~d~~~p~Gp~v~~d~~~d~~~l~i~~~VNGe~~Q~~~t~~mi~~~~eli~~lS~~~tL~pGDvI~TGT 185 (217)
T d1sawa_ 106 KKKGLPWTLAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIITLEEGDIILTGT 185 (217)
T ss_dssp HHHTCCSHHHHCSTTCEEECCCEETTSCSCTTSCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHTTSCBCTTCEEECCC
T ss_pred hhcCCCccccccccCcCcceeEEEHHHCCCccceEEEEEECCEEEEeCChHHhcccHHHHHHHHhCCceECCCcEEEcCC
Confidence 35689999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCcc
Q psy538 84 AGFILMFQQSPHS 96 (97)
Q Consensus 84 p~g~~~~~~g~~~ 96 (97)
|.|++++++||++
T Consensus 186 P~Gvg~l~~GD~v 198 (217)
T d1sawa_ 186 PKGVGPVKENDEI 198 (217)
T ss_dssp CSCCEEECTTCEE
T ss_pred CCCCccCCCCCEE
Confidence 9999999999975
>d1nr9a_ d.177.1.1 (A:) Putative isomerase YcgM {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Putative isomerase YcgM
species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.9e-35 Score=207.12 Aligned_cols=93 Identities=40% Similarity=0.652 Sum_probs=88.4
Q ss_pred hhcCCCcccccCCCCCcccCCcc-cCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCCEEEcC
Q psy538 4 REHGLPWTVGKGFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILTG 82 (97)
Q Consensus 4 ~~~~~~w~~aK~~d~~~~lGp~v-~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGDvI~tG 82 (97)
++.+.+|.++|+||+|||+|||+ +.+++.++.+++|+++|||+++|++++++|+|+++++|+|+|++++|+|||||+||
T Consensus 113 ~~~~~~~~~~K~~d~~~p~Gp~i~~~~~~~d~~~l~i~~~vNGe~~Q~~~t~~Mi~~~~elI~~lS~~~tL~pGDiI~TG 192 (221)
T d1nr9a_ 113 KKAGQPWEKAKAFDNSCPLSGFIPAAEFTGDPQNTTLSLSVNGEQRQQGTTADMIHKIVPLIAYMSKFFTLKAGDVVLTG 192 (221)
T ss_dssp HHHTCCSHHHHSSTTCEEECCBEEGGGCCSCGGGCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHTTTSCBCTTCEEECC
T ss_pred hhcccccccCcccCCccccceeeeeeeccCCCcccEEEEEECCEEEEecccccccCCHHHHHHHHhCCCEECCCCEEEcC
Confidence 45789999999999999999997 67777889999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccCCCcc
Q psy538 83 KAGFILMFQQSPHS 96 (97)
Q Consensus 83 Tp~g~~~~~~g~~~ 96 (97)
||+|++++++||+.
T Consensus 193 TP~Gvg~l~~GD~v 206 (221)
T d1nr9a_ 193 TPDGVGPLQSGDEL 206 (221)
T ss_dssp CCSCCEEECTTCEE
T ss_pred CCCCCccCCCCCEE
Confidence 99999999999975
>d1gtta1 d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE
species: Escherichia coli [TaxId: 562]
Probab=99.98 E-value=5e-33 Score=195.88 Aligned_cols=89 Identities=24% Similarity=0.342 Sum_probs=83.2
Q ss_pred hcCCCcccccCCCCCcccCCcccCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCCEEEcCCC
Q psy538 5 EHGLPWTVGKGFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILTGKA 84 (97)
Q Consensus 5 ~~~~~w~~aK~~d~~~~lGp~v~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGDvI~tGTp 84 (97)
+.+.+|.++|+||+|||+|||+..+ ++.++.|+++|||+++|++++++|+|++++||+|+|++++|+|||||+||||
T Consensus 101 ~~~~~~~~~K~~d~~~p~Gp~i~~~---~~~~l~i~~~vNGe~~Q~~~t~~mi~~~~~lI~~lS~~~tL~pGDvI~TGTP 177 (213)
T d1gtta1 101 SFYRPAIKAKCRDGFCPIGETVALS---NVDNLTIYTEINGRPADHWNTADLQRNAAQLLSALSEFATLNPGDAILLGTP 177 (213)
T ss_dssp CSSSCCHHHHCSTTCEEBCCCBCCS---CCTTCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHTTSCBCTTCEEECCCC
T ss_pred hhhhhccccccceecccceeeEeec---cceeEEEEEEeccccccccccccccCCHHHHHHHHhCCCCcCCCCEEEeCCc
Confidence 3578999999999999999998543 5578999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCcc
Q psy538 85 GFILMFQQSPHS 96 (97)
Q Consensus 85 ~g~~~~~~g~~~ 96 (97)
+|++++++||+.
T Consensus 178 ~g~~~l~~GD~v 189 (213)
T d1gtta1 178 QARVEIQPGDRV 189 (213)
T ss_dssp SCCCEECTTCEE
T ss_pred CCCccCCCCCEE
Confidence 999999999975
>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Hypothetical protein Ynl168c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.7e-32 Score=197.72 Aligned_cols=93 Identities=35% Similarity=0.530 Sum_probs=83.7
Q ss_pred hhcCCCcccccCCCCCcccCCccc-CCCCCC----CCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCCE
Q psy538 4 REHGLPWTVGKGFDTACPVSDFIP-EHEIKD----PDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDL 78 (97)
Q Consensus 4 ~~~~~~w~~aK~~d~~~~lGp~v~-~~~~~d----~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGDv 78 (97)
+.++.+|.++|+||+|||+|||++ .+.+.+ ...++|+++|||+++|++++++|+|+++++|+|+|++++|+||||
T Consensus 131 ~~~g~~~~~~K~~d~~~Pigp~i~~~~~~~~~~~~~~~l~i~~~vNGe~~Q~~~t~~mi~~~~elIa~lS~~~tL~pGDl 210 (257)
T d1nkqa_ 131 KKKGLPWTISKGFDTFMPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGTNLMLHPLHKILQHISTMISLEPGDI 210 (257)
T ss_dssp HHHTCCSHHHHHSTTCEEBCCCEEGGGGGGGTTCCTTTEEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHTTSCBCTTCE
T ss_pred hccCCCcccccccccccCccceEehhhhCccccccccceEEEEEECCEEeeeeeeeccCCCHHHHHHHHhCCCCcCCCCE
Confidence 356899999999999999999984 433333 245789999999999999999999999999999999999999999
Q ss_pred EEcCCCCCcccccCCCcc
Q psy538 79 ILTGKAGFILMFQQSPHS 96 (97)
Q Consensus 79 I~tGTp~g~~~~~~g~~~ 96 (97)
|+||||+|++++++||++
T Consensus 211 I~TGTP~Gvg~l~~GD~v 228 (257)
T d1nkqa_ 211 ILTGTPAGVGELKPGDRV 228 (257)
T ss_dssp EECCCCSCCEEECTTCEE
T ss_pred EEcCCCCCceeCCCCCEE
Confidence 999999999999999975
>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE
species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=8.6e-31 Score=184.27 Aligned_cols=92 Identities=36% Similarity=0.450 Sum_probs=86.6
Q ss_pred hcCCCcccccCCCCCcccCCcc-cCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCCEEEcCC
Q psy538 5 EHGLPWTVGKGFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILTGK 83 (97)
Q Consensus 5 ~~~~~w~~aK~~d~~~~lGp~v-~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGDvI~tGT 83 (97)
+...+|..+|+||+|+++|||+ +.++..|+.+++++++|||+++|++++++|+|+++++|+|+|++++|+|||||+|||
T Consensus 103 ~~~~~~~~~k~~~~~~~~~p~~~~~d~~~d~~~l~i~~~vNg~~~Q~~~t~~Mi~~~~~li~~lS~~~tL~pGDvI~TGT 182 (216)
T d1gtta2 103 NYYRPNLRVKSRDGLTPMLSTIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSEFMTLNPGDMIATGT 182 (216)
T ss_dssp SSSSSCHHHHSCTTCEEBCSCCEEGGGCSCTTSCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHTTSCBCTTCEEECCC
T ss_pred cccccccccccccccccccccccchhhcCCcCceEEEEEECCEEEecCcHHHhccCHHHHHHHHhCCCCcCCCCEEEeCC
Confidence 4566899999999999999996 677777899999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCcc
Q psy538 84 AGFILMFQQSPHS 96 (97)
Q Consensus 84 p~g~~~~~~g~~~ 96 (97)
|+|++.+++||++
T Consensus 183 P~Gvg~l~~GD~v 195 (216)
T d1gtta2 183 PKGLSDVVPGDEV 195 (216)
T ss_dssp CSCCCBCCTTCEE
T ss_pred CCCccCCCCCCEE
Confidence 9999999999985
>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Fumarylacetoacetate hydrolase, FAH, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.92 E-value=4.8e-26 Score=166.71 Aligned_cols=93 Identities=16% Similarity=0.157 Sum_probs=75.1
Q ss_pred Chhhh---cCCCcccccCCCCCcccCCcc-cCCCC----------------------CCCCceeEEEEE------CCEEE
Q psy538 1 KHARE---HGLPWTVGKGFDTACPVSDFI-PEHEI----------------------KDPDDVPLWLKV------NGELR 48 (97)
Q Consensus 1 ~~~~~---~~~~w~~aK~~d~~~~lGp~v-~~~~~----------------------~d~~~~~i~~~v------NG~~~ 48 (97)
|++|+ ++.+|.++|+|| +|+|||+ +++++ .+..++.+++++ ||+.+
T Consensus 119 Rd~Q~~~~~~~~~~~gK~f~--tpiGP~ivt~~~l~p~~~~~~~~dp~~~~~~~~~~~~~~dl~l~~~lng~~~~ng~~~ 196 (298)
T d1hyoa2 119 RDIQQWEYVPLGPFLGKSFG--TTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLSVSLKGEGMSQAATI 196 (298)
T ss_dssp HHHHHHHCTTTCCCHHHHTC--EEECSCBEEHHHHGGGEECCCCCSSCCCGGGCCCSCCEECCEEEEEEECTTCSSCEEE
T ss_pred HHHHHhhccCCCcccccCCC--CCCCCeEccchhcCcccccccccCccccccccccCCCCccceEEEEEEEEEeecCeEE
Confidence 35553 457899999986 5999996 55443 122356666654 88999
Q ss_pred EeccCCccCCCHHHHHHH-HHcccccCCCCEEEcCCCCCcccccCCCc
Q psy538 49 QKSTTGDMLFKTGDLISY-ISQHMTLEPYDLILTGKAGFILMFQQSPH 95 (97)
Q Consensus 49 q~~~t~~m~~~~~~li~~-lS~~~tL~pGDvI~tGTp~g~~~~~~g~~ 95 (97)
|++++++|+|++.|+|+| +|++++|+|||||+||||+|++++++||.
T Consensus 197 q~~nt~dMif~~~e~Ia~~~S~~~tL~pGDlI~TGTP~G~~~~~~Gd~ 244 (298)
T d1hyoa2 197 CRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFGSM 244 (298)
T ss_dssp EEEETTCCSSCHHHHHHHHHTTSCCCCTTCEEECCCCCCSSGGGCCBH
T ss_pred ecCcHHhcCCCHHHHHHHHHhCceeechhhEEEecCCCCCCCCCCCcE
Confidence 999999999999999998 57899999999999999999999988874
>d1sv6a_ d.177.1.1 (A:) 2-keto-4-pentenoate hydratase MhpD {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: 2-keto-4-pentenoate hydratase MhpD
species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=1.1e-13 Score=96.96 Aligned_cols=82 Identities=13% Similarity=0.089 Sum_probs=70.7
Q ss_pred CCCCCcccCCcccCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHc-----ccccCCCCEEEcCCCCCccc
Q psy538 15 GFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQ-----HMTLEPYDLILTGKAGFILM 89 (97)
Q Consensus 15 ~~d~~~~lGp~v~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~-----~~tL~pGDvI~tGTp~g~~~ 89 (97)
++.+...+|+.++.....+..++.+++++||+.++++++++++++|.+.|.||++ ..+|++||+|+|||+.++.+
T Consensus 159 ~~~~~~v~g~~~~~~~~~d~~~~~v~l~~ng~~~~~g~~~~~~g~P~~al~wL~~~l~~~g~~L~~G~iV~TGs~~~~~~ 238 (261)
T d1sv6a_ 159 ASCGVYVIGGPAQRPAGLDLKNCAMKMTRNNEEVSSGRGSECLGHPLNAAVWLARKMASLGEPLRTGDIILTGALGPMVA 238 (261)
T ss_dssp GGEEEEEECSCCBCSTTCCCSSCEEEEEETTEEEEEEEGGGTTTSHHHHHHHHHHHHHHTTCCBCTTCEEEEEESSCCEE
T ss_pred cCcccccccCcccchhhhccccccceEEEeceeEEecccccccCChHHHHHHHHHHHHHcCCCCCCCCEEECCCCCCCEE
Confidence 4455677787764333347889999999999999999999999999999999875 58999999999999999999
Q ss_pred ccCCCcc
Q psy538 90 FQQSPHS 96 (97)
Q Consensus 90 ~~~g~~~ 96 (97)
+++||++
T Consensus 239 i~~Gd~v 245 (261)
T d1sv6a_ 239 VNAGDRF 245 (261)
T ss_dssp CCTTCEE
T ss_pred CCCCCEE
Confidence 9999986
