Psyllid ID: psy5391

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------
Protein Sequence
MSSRWYPIYQKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLFESYLSSGIITSAKRLMKCIKLQNGLFIKINPIGTKDLLVLGVWGALSLVKTARLLE
Secondary Structure (PSIPRED)
ccccccccccccccccEEEccccEEEEEEccccccccEEEEEEcccccHHHHHHHHHHHHcccccEEEEEEEccccEEEccccccccccccccEEEEEcEEEEEccccccccccHHHHHHHHHcHHHHHHcccccccEEEEEEEccEEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEEEcccEEEEEEcccccccccEEEEEEcccccHHcHHHHHHHHHcccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mssrwypiyqkgnpqlriflPNFWMKLVrskeplppnvvefhvplamtNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMtlqptrtvSTSLFESYLSSGIITSAKRLMKCIKLQnglfikinpigtkdlLVLGVWGALSLVKTARLLE
Flexible Loop (DISEMBL)
mssrwypiyqkgnpqlrIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLFESYLSSGIITSAKRLMKCIKLQNGLFIKINPIGTKDLLVLGVWGALSLVKTARLLE
Low Complexity Region (SEG)
MSSRWYPIYQKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLFESYLSSGIITSAKRLMKCIKLQNGLFIKINPIGTKDLLVLGVWGALSLVKTARLLE
Disordered region (IsUnstruct)
****WYPIYQKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLFESYLSSGIITSAKRLMKCIKLQNGLFIKINPIGTKDLLVLGVWGALSLVKTA****
Disordered Region (DISOPRED)
**SRWYPIYQKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATS***********M*LQPTRTVSTSLFESYLSSGIITSAKRLM********************LLVLGVWGALSLVKTARLL*
Disordered Region (DISEMBL)
MSSRWYPIYQKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLFESYLSSGIITSAKRLMKCIKLQNGLFIKINPIGTKDLLVLGVWGALSLVKTARLLE
Disordered Region (DISPRO)
***RWYPIYQKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLFESYLSSGIITSAKRLMKCIKLQNGLFIKINPIGTKDLLVLGVWGALSLVKTARLLE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSRWYPIYQKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLFESYLSSGIITSAKRLMKCIKLQNGLFIKINPIGTKDLLVLGVWGALSLVKTARLLE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	157	2.2.26 [Sep-21-2011]
Q5TUE9	151	Probable 39S ribosomal pr	yes	N/A	0.452	0.470	0.676	6e-24
Q9W021	150	39S ribosomal protein L23	yes	N/A	0.452	0.473	0.633	1e-22
Q6IQS9	153	39S ribosomal protein L23	yes	N/A	0.452	0.464	0.507	4e-15
B5FWC0	153	39S ribosomal protein L23	N/A	N/A	0.445	0.457	0.457	7e-14
O35972	146	39S ribosomal protein L23	yes	N/A	0.452	0.486	0.450	1e-13
Q63750	146	39S ribosomal protein L23	yes	N/A	0.452	0.486	0.450	2e-13
Q16540	153	39S ribosomal protein L23	yes	N/A	0.452	0.464	0.436	8e-13
Q9GYS9	159	Probable 39S ribosomal pr	yes	N/A	0.821	0.811	0.324	9e-13
Q61DA8	159	Probable 39S ribosomal pr	N/A	N/A	0.458	0.452	0.434	1e-12

>sp|Q5TUE9|RM23_ANOGA Probable 39S ribosomal protein L23, mitochondrial OS=Anopheles gambiae GN=mRpL23 PE=3 SV=1

 Score =  109 bits (273), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 48/71 (67%), Positives = 57/71 (80%)

Query: 1  MSSRWYPIYQKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIY 60
          MSSRWYPIYQ+GNPQLR+FLPNFW+KLVR     PPNVV+F   + MT HD+KNYLEKIY
Sbjct: 1  MSSRWYPIYQRGNPQLRVFLPNFWLKLVRPANEQPPNVVQFACSMEMTRHDVKNYLEKIY 60

Query: 61 NVTVKHVESTL 71
          NV V +V + +
Sbjct: 61 NVPVVNVRTRI 71

Anopheles gambiae (taxid: 7165)

>sp|Q9W021|RM23_DROME 39S ribosomal protein L23, mitochondrial OS=Drosophila melanogaster GN=mRpL23 PE=2 SV=1

 Score =  105 bits (263), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 45/71 (63%), Positives = 56/71 (78%)

Query: 1  MSSRWYPIYQKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIY 60
          MS+RWYPIYQ+GNPQLR+FLPNFWMKL+R  E  PPNVV F V + MT +D++NYLEKIY
Sbjct: 1  MSTRWYPIYQRGNPQLRVFLPNFWMKLIRPTEEQPPNVVTFSVSMEMTKYDVRNYLEKIY 60

Query: 61 NVTVKHVESTL 71
           + V  V + +
Sbjct: 61 KLPVVDVRTRI 71

Drosophila melanogaster (taxid: 7227)

>sp|Q6IQS9|RM23_DANRE 39S ribosomal protein L23, mitochondrial OS=Danio rerio GN=mrpl23 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 50/71 (70%)

Query: 6  YPIYQKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVK 65
          YP+YQ GNPQLRIF P F M LVR  +  PP+ V+F + +AMT  D++NYLEKIY+V V 
Sbjct: 7  YPLYQLGNPQLRIFRPTFNMTLVRPGKEQPPDTVQFRISMAMTKCDVRNYLEKIYSVPVS 66

Query: 66 HVESTLENATS 76
           V + ++  ++
Sbjct: 67 AVRTRIQYCSN 77

Danio rerio (taxid: 7955)

>sp|B5FWC0|RM23_OTOGA 39S ribosomal protein L23, mitochondrial OS=Otolemur garnettii GN=MRPL23 PE=3 SV=1

 Score = 76.3 bits (186), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 49/70 (70%)

Query: 6  YPIYQKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVK 65
          YP+YQ G PQLR+F  NF+++LVR     P + V+F +P+ MT  D++NYLE+IYNV V 
Sbjct: 7  YPLYQLGGPQLRVFRTNFFIQLVRPGTAQPEDTVQFRIPMEMTRVDLRNYLERIYNVPVA 66

Query: 66 HVESTLENAT 75
           V + +++ +
Sbjct: 67 AVRTRVQHGS 76

Otolemur garnettii (taxid: 30611)

>sp|O35972|RM23_MOUSE 39S ribosomal protein L23, mitochondrial OS=Mus musculus GN=Mrpl23 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 50/71 (70%)

Query: 6  YPIYQKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVK 65
          YP+YQ G PQLR+F  NF+++LVR     P + V+F +P+ MT  D++NYLE+IYNV V 
Sbjct: 7  YPLYQLGGPQLRVFRTNFFIQLVRPGTAQPEDTVQFRIPMEMTRVDLRNYLEQIYNVPVA 66

Query: 66 HVESTLENATS 76
           V + +++ ++
Sbjct: 67 AVRTRVQHGSN 77

Mus musculus (taxid: 10090)

>sp|Q63750|RM23_RAT 39S ribosomal protein L23, mitochondrial OS=Rattus norvegicus GN=Mrpl23 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 50/71 (70%)

Query: 6  YPIYQKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVK 65
          YP+YQ G PQLR+F  NF+++LVR     P + V+F +P+ MT  D++NYLE+IYNV V 
Sbjct: 7  YPLYQLGGPQLRVFRTNFFIQLVRPGTAQPEDTVQFRIPMEMTRVDLRNYLEQIYNVPVA 66

Query: 66 HVESTLENATS 76
           V + +++ ++
Sbjct: 67 AVRTRVQHGSN 77

Rattus norvegicus (taxid: 10116)

>sp|Q16540|RM23_HUMAN 39S ribosomal protein L23, mitochondrial OS=Homo sapiens GN=MRPL23 PE=1 SV=1

 Score = 72.8 bits (177), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 49/71 (69%)

Query: 6  YPIYQKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVK 65
          YP+Y+ G PQLR+F  NF+++LVR     P + V+F +P+ MT  D++NYLE IYNV V 
Sbjct: 7  YPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVA 66

Query: 66 HVESTLENATS 76
           V + +++ ++
Sbjct: 67 AVRTRVQHGSN 77

Homo sapiens (taxid: 9606)

>sp|Q9GYS9|RM23_CAEEL Probable 39S ribosomal protein L23, mitochondrial OS=Caenorhabditis elegans GN=T08B2.8 PE=3 SV=1

 Score = 72.8 bits (177), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 71/145 (48%), Gaps = 16/145 (11%)

Query: 1   MSSRWYPIYQKGNPQLRIFLPNFWMKLVRS----KEPLPPNVVEFHVPLAMTNHDIKNYL 56
           M+SR   ++Q GNPQ R+FLP+FWM +V S    +  LP N V+F V   M+ HDI+ YL
Sbjct: 1   MTSRLARLWQPGNPQRRVFLPDFWMAVVESPSVGRNRLPRNCVKFEVDPRMSRHDIREYL 60

Query: 57  EKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLFESYLSSGI------- 109
            KIY++ V+ V + ++       W S L  Q      +     +   ++S G        
Sbjct: 61  TKIYDLPVRDVRTEVQMGD--ITWNSKLDHQYKKAMWKDEDKKIAYVFMSKGFEFSYPQM 118

Query: 110 ---ITSAKRLMKCIKLQNGLFIKIN 131
              +     L+K +K Q  L  K+N
Sbjct: 119 FEALEEDLELVKAMKQQEELKDKLN 143

Caenorhabditis elegans (taxid: 6239)

>sp|Q61DA8|RM23_CAEBR Probable 39S ribosomal protein L23, mitochondrial OS=Caenorhabditis briggsae GN=CBG12563 PE=3 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 4/76 (5%)

Query: 1  MSSRWYPIYQKGNPQLRIFLPNFWMKLVRS----KEPLPPNVVEFHVPLAMTNHDIKNYL 56
          M+SR   ++Q GNPQ R+FLP+FWM ++ S    +  LP N V+F V   M+ HDI+ YL
Sbjct: 1  MTSRLARLWQPGNPQRRVFLPDFWMAVIESPSVGRNKLPRNCVKFEVDPRMSRHDIREYL 60

Query: 57 EKIYNVTVKHVESTLE 72
           KIY++ V+ V + ++
Sbjct: 61 TKIYDLPVRDVRTEVQ 76

Caenorhabditis briggsae (taxid: 6238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
57941020	151	AGAP010338-PA [Anopheles gambiae str. PE	0.452	0.470	0.676	3e-22
195377279	150	GJ11942 [Drosophila virilis] gi|19415457	0.452	0.473	0.676	3e-21
195016704	150	GH15005 [Drosophila grimshawi] gi|193897	0.452	0.473	0.676	3e-21
194746888	150	GF24868 [Drosophila ananassae] gi|190623	0.452	0.473	0.619	3e-21
427786355	152	Putative 39s ribosomal protein l23 [Rhip	0.535	0.552	0.6	5e-21
346469935	152	hypothetical protein [Amblyomma maculatu	0.535	0.552	0.588	5e-21
195439942	150	GK12514 [Drosophila willistoni] gi|19416	0.452	0.473	0.661	5e-21
17647675	150	mitochondrial ribosomal protein L23, iso	0.452	0.473	0.633	5e-21
380018796	142	PREDICTED: 39S ribosomal protein L23, mi	0.503	0.556	0.637	7e-21
239788444	154	ACYPI31744 [Acyrthosiphon pisum]	0.471	0.480	0.702	7e-21

>gi|57941020|ref|XP_559130.1| AGAP010338-PA [Anopheles gambiae str. PEST] gi|68566025|sp|Q5TUE9.1|RM23_ANOGA RecName: Full=Probable 39S ribosomal protein L23, mitochondrial; Short=L23mt; Short=MRP-L23 gi|55242836|gb|EAL41058.1| AGAP010338-PA [Anopheles gambiae str. PEST]

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 48/71 (67%), Positives = 57/71 (80%)

Query: 1  MSSRWYPIYQKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIY 60
          MSSRWYPIYQ+GNPQLR+FLPNFW+KLVR     PPNVV+F   + MT HD+KNYLEKIY
Sbjct: 1  MSSRWYPIYQRGNPQLRVFLPNFWLKLVRPANEQPPNVVQFACSMEMTRHDVKNYLEKIY 60

Query: 61 NVTVKHVESTL 71
          NV V +V + +
Sbjct: 61 NVPVVNVRTRI 71

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195377279|ref|XP_002047418.1| GJ11942 [Drosophila virilis] gi|194154576|gb|EDW69760.1| GJ11942 [Drosophila virilis]

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/71 (67%), Positives = 54/71 (76%)

Query: 1  MSSRWYPIYQKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIY 60
          MS+RWYPIYQ+GNPQLR+FLPNFWMKLVR  E  P NVV F V   MT HD+KNYLEKIY
Sbjct: 1  MSTRWYPIYQRGNPQLRVFLPNFWMKLVRPTEEQPANVVTFAVSTEMTKHDVKNYLEKIY 60

Query: 61 NVTVKHVESTL 71
           V V  V + +
Sbjct: 61 KVPVVDVRTRI 71

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195016704|ref|XP_001984468.1| GH15005 [Drosophila grimshawi] gi|193897950|gb|EDV96816.1| GH15005 [Drosophila grimshawi]

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/71 (67%), Positives = 54/71 (76%)

Query: 1  MSSRWYPIYQKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIY 60
          MS+RWYPIYQ+GNPQLR+FLPNFWMKLVR  E  P NVV F V   MT HD+KNYLEKIY
Sbjct: 1  MSTRWYPIYQRGNPQLRVFLPNFWMKLVRPTEDQPANVVTFAVSTEMTKHDVKNYLEKIY 60

Query: 61 NVTVKHVESTL 71
           V V  V + +
Sbjct: 61 KVPVVDVRTRI 71

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194746888|ref|XP_001955886.1| GF24868 [Drosophila ananassae] gi|190623168|gb|EDV38692.1| GF24868 [Drosophila ananassae]

 Score =  106 bits (264), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 57/71 (80%)

Query: 1  MSSRWYPIYQKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIY 60
          MS+RWYPIYQ+GNPQLR+FLPNFWMK++R KE  PPN+V F V + MT +D++NYLEKIY
Sbjct: 1  MSTRWYPIYQRGNPQLRVFLPNFWMKVIRPKEEQPPNIVTFSVSMEMTKYDVRNYLEKIY 60

Query: 61 NVTVKHVESTL 71
           + V  V + +
Sbjct: 61 KLPVIDVRTRI 71

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427786355|gb|JAA58629.1| Putative 39s ribosomal protein l23 [Rhipicephalus pulchellus]

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 51/85 (60%), Positives = 62/85 (72%), Gaps = 1/85 (1%)

Query: 1  MSSRWYPIYQKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIY 60
          MSSR YP+Y KGNPQLR+FLPNFWMKLV+  +PLPPN V+F V L MT +D+KNYLEKIY
Sbjct: 1  MSSRIYPLYVKGNPQLRVFLPNFWMKLVKHDKPLPPNEVKFIVSLQMTKYDVKNYLEKIY 60

Query: 61 NVTVKHVEST-LENATSMAEWVSWL 84
          NV V  V +  ++     AE   +L
Sbjct: 61 NVPVADVRTAIMQGKIRKAEGKGYL 85

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346469935|gb|AEO34812.1| hypothetical protein [Amblyomma maculatum]

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 50/85 (58%), Positives = 62/85 (72%), Gaps = 1/85 (1%)

Query: 1  MSSRWYPIYQKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIY 60
          MSSR YP+Y KGNPQLRIFLPNFWMKLV+  +PLPPN V+F +P+ MT +D+KNYLEKIY
Sbjct: 1  MSSRVYPLYVKGNPQLRIFLPNFWMKLVKHDKPLPPNEVKFIIPVQMTKYDVKNYLEKIY 60

Query: 61 NVTVKHVEST-LENATSMAEWVSWL 84
           V V  V +  ++     AE   +L
Sbjct: 61 KVPVADVRTKIMQGKIKKAEGKGYL 85

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195439942|ref|XP_002067818.1| GK12514 [Drosophila willistoni] gi|194163903|gb|EDW78804.1| GK12514 [Drosophila willistoni]

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 47/71 (66%), Positives = 55/71 (77%)

Query: 1  MSSRWYPIYQKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIY 60
          MS+RWYPIYQ+GNPQLR+FLPNFWMKLVR +E  P NVV F V   MT HD+KNYLEKIY
Sbjct: 1  MSTRWYPIYQRGNPQLRVFLPNFWMKLVRPQEEQPANVVTFAVSTEMTKHDVKNYLEKIY 60

Query: 61 NVTVKHVESTL 71
           + V  V + +
Sbjct: 61 KLPVVEVRTRI 71

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17647675|ref|NP_523889.1| mitochondrial ribosomal protein L23, isoform A [Drosophila melanogaster] gi|221330777|ref|NP_001137873.1| mitochondrial ribosomal protein L23, isoform B [Drosophila melanogaster] gi|442629719|ref|NP_001261325.1| mitochondrial ribosomal protein L23, isoform C [Drosophila melanogaster] gi|442629721|ref|NP_001261326.1| mitochondrial ribosomal protein L23, isoform D [Drosophila melanogaster] gi|68566063|sp|Q9W021.1|RM23_DROME RecName: Full=39S ribosomal protein L23, mitochondrial; Short=L23mt; Short=MRP-L23 gi|7292229|gb|AAF47639.1| mitochondrial ribosomal protein L23, isoform A [Drosophila melanogaster] gi|17945986|gb|AAL49037.1| RE49852p [Drosophila melanogaster] gi|220902427|gb|ACL83229.1| mitochondrial ribosomal protein L23, isoform B [Drosophila melanogaster] gi|220948942|gb|ACL87014.1| mRpL23-PA [synthetic construct] gi|440215199|gb|AGB94020.1| mitochondrial ribosomal protein L23, isoform C [Drosophila melanogaster] gi|440215200|gb|AGB94021.1| mitochondrial ribosomal protein L23, isoform D [Drosophila melanogaster]

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 45/71 (63%), Positives = 56/71 (78%)

Query: 1  MSSRWYPIYQKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIY 60
          MS+RWYPIYQ+GNPQLR+FLPNFWMKL+R  E  PPNVV F V + MT +D++NYLEKIY
Sbjct: 1  MSTRWYPIYQRGNPQLRVFLPNFWMKLIRPTEEQPPNVVTFSVSMEMTKYDVRNYLEKIY 60

Query: 61 NVTVKHVESTL 71
           + V  V + +
Sbjct: 61 KLPVVDVRTRI 71

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018796|ref|XP_003693307.1| PREDICTED: 39S ribosomal protein L23, mitochondrial-like [Apis florea]

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 51/80 (63%), Positives = 60/80 (75%), Gaps = 1/80 (1%)

Query: 1  MSSRWYPIYQKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIY 60
          MS+RWYP+YQKGNPQLRIFLPNFWMKLV+ +   P NVVEFHV + MT  D+KNYLEKIY
Sbjct: 1  MSTRWYPLYQKGNPQLRIFLPNFWMKLVKPQHNQPKNVVEFHVSMEMTKIDVKNYLEKIY 60

Query: 61 NVTVKHVESTLE-NATSMAE 79
          NV   +V + +    T M E
Sbjct: 61 NVYPVYVNTRIALGKTHMPE 80

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239788444|dbj|BAH70904.1| ACYPI31744 [Acyrthosiphon pisum]

 Score =  105 bits (261), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 52/74 (70%), Positives = 62/74 (83%)

Query: 1  MSSRWYPIYQKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIY 60
          MS+RWYPIYQ+GNPQLRIFLPNFWMKLVR +E  P NVV+F VP  MTN+DI+NYL+KIY
Sbjct: 1  MSTRWYPIYQRGNPQLRIFLPNFWMKLVRPEEKQPKNVVQFKVPTGMTNYDIENYLKKIY 60

Query: 61 NVTVKHVESTLENA 74
           + V  VES++EN 
Sbjct: 61 KIKVIKVESSIENG 74

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
FB|FBgn0035335	150	mRpL23 "mitochondrial ribosoma	0.452	0.473	0.633	2.1e-22
UNIPROTKB|F1NVZ3	152	MRPL23 "Uncharacterized protei	0.426	0.440	0.567	2.6e-15
ZFIN|ZDB-GENE-040625-12	153	mrpl23 "mitochondrial ribosoma	0.426	0.437	0.537	2.6e-15
UNIPROTKB|F1PBY1	153	MRPL23 "Uncharacterized protei	0.452	0.464	0.478	6.9e-15
UNIPROTKB|F1NK84	105	MRPL23 "Uncharacterized protei	0.363	0.542	0.631	1.8e-14
MGI|MGI:1196612	146	Mrpl23 "mitochondrial ribosoma	0.452	0.486	0.450	4.9e-14
RGD|68343	146	Mrpl23 "mitochondrial ribosoma	0.452	0.486	0.450	4.9e-14
UNIPROTKB|A6NJD9	163	MRPL23 "39S ribosomal protein	0.452	0.435	0.436	3.4e-13
UNIPROTKB|A8MVT4	166	MRPL23 "39S ribosomal protein	0.452	0.427	0.436	3.4e-13
UNIPROTKB|A8MYK1	191	MRPL23 "39S ribosomal protein	0.452	0.371	0.436	3.4e-13

FB|FBgn0035335 mRpL23 "mitochondrial ribosomal protein L23" [Drosophila melanogaster (taxid:7227)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 45/71 (63%), Positives = 56/71 (78%)

Query:     1 MSSRWYPIYQKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIY 60
             MS+RWYPIYQ+GNPQLR+FLPNFWMKL+R  E  PPNVV F V + MT +D++NYLEKIY
Sbjct:     1 MSTRWYPIYQRGNPQLRVFLPNFWMKLIRPTEEQPPNVVTFSVSMEMTKYDVRNYLEKIY 60

Query:    61 NVTVKHVESTL 71
              + V  V + +
Sbjct:    61 KLPVVDVRTRI 71

GO:0006412 "translation" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1NVZ3 MRPL23 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 38/67 (56%), Positives = 46/67 (68%)

Query:     6 YPIYQKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVK 65
             YP+YQ G PQLRIF PNF+M  VR   P P + V+F V + MT  DIKNYLEKIYNV V 
Sbjct:     7 YPLYQLGGPQLRIFRPNFFMLAVRPGVPQPEDTVQFRVSMEMTKVDIKNYLEKIYNVPVA 66

Query:    66 HVESTLE 72
              V + ++
Sbjct:    67 AVRTRIQ 73

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

ZFIN|ZDB-GENE-040625-12 mrpl23 "mitochondrial ribosomal protein L23" [Danio rerio (taxid:7955)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 36/67 (53%), Positives = 48/67 (71%)

Query:     6 YPIYQKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVK 65
             YP+YQ GNPQLRIF P F M LVR  +  PP+ V+F + +AMT  D++NYLEKIY+V V 
Sbjct:     7 YPLYQLGNPQLRIFRPTFNMTLVRPGKEQPPDTVQFRISMAMTKCDVRNYLEKIYSVPVS 66

Query:    66 HVESTLE 72
              V + ++
Sbjct:    67 AVRTRIQ 73

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1PBY1 MRPL23 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 34/71 (47%), Positives = 51/71 (71%)

Query:     6 YPIYQKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVK 65
             YP+YQ GNPQLRIF  NF+++LVR     P + V+F +P+ MT  D++NYLE+IYNV V 
Sbjct:     7 YPLYQLGNPQLRIFRTNFFIQLVRPGTAQPEDTVQFRIPMEMTRVDLRNYLERIYNVPVA 66

Query:    66 HVESTLENATS 76
              V + +++ ++
Sbjct:    67 AVRTRVQHGSN 77

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1NK84 MRPL23 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 36/57 (63%), Positives = 41/57 (71%)

Query:     6 YPIYQKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIYNV 62
             YP+YQ G PQLRIF PNF+M  VR   P P + V+F V + MT  DIKNYLEKIYNV
Sbjct:    10 YPLYQLGGPQLRIFRPNFFMLAVRPGVPQPEDTVQFRVSMEMTKVDIKNYLEKIYNV 66

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

MGI|MGI:1196612 Mrpl23 "mitochondrial ribosomal protein L23" [Mus musculus (taxid:10090)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 32/71 (45%), Positives = 50/71 (70%)

Query:     6 YPIYQKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVK 65
             YP+YQ G PQLR+F  NF+++LVR     P + V+F +P+ MT  D++NYLE+IYNV V 
Sbjct:     7 YPLYQLGGPQLRVFRTNFFIQLVRPGTAQPEDTVQFRIPMEMTRVDLRNYLEQIYNVPVA 66

Query:    66 HVESTLENATS 76
              V + +++ ++
Sbjct:    67 AVRTRVQHGSN 77

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

RGD|68343 Mrpl23 "mitochondrial ribosomal protein L23" [Rattus norvegicus (taxid:10116)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 32/71 (45%), Positives = 50/71 (70%)

Query:     6 YPIYQKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVK 65
             YP+YQ G PQLR+F  NF+++LVR     P + V+F +P+ MT  D++NYLE+IYNV V 
Sbjct:     7 YPLYQLGGPQLRVFRTNFFIQLVRPGTAQPEDTVQFRIPMEMTRVDLRNYLEQIYNVPVA 66

Query:    66 HVESTLENATS 76
              V + +++ ++
Sbjct:    67 AVRTRVQHGSN 77

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|A6NJD9 MRPL23 "39S ribosomal protein L23, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 31/71 (43%), Positives = 49/71 (69%)

Query:     6 YPIYQKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVK 65
             YP+Y+ G PQLR+F  NF+++LVR     P + V+F +P+ MT  D++NYLE IYNV V 
Sbjct:     7 YPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVA 66

Query:    66 HVESTLENATS 76
              V + +++ ++
Sbjct:    67 AVRTRVQHGSN 77

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|A8MVT4 MRPL23 "39S ribosomal protein L23, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 31/71 (43%), Positives = 49/71 (69%)

Query:     6 YPIYQKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVK 65
             YP+Y+ G PQLR+F  NF+++LVR     P + V+F +P+ MT  D++NYLE IYNV V 
Sbjct:     7 YPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVA 66

Query:    66 HVESTLENATS 76
              V + +++ ++
Sbjct:    67 AVRTRVQHGSN 77

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|A8MYK1 MRPL23 "39S ribosomal protein L23, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 31/71 (43%), Positives = 49/71 (69%)

Query:     6 YPIYQKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVK 65
             YP+Y+ G PQLR+F  NF+++LVR     P + V+F +P+ MT  D++NYLE IYNV V 
Sbjct:     7 YPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVA 66

Query:    66 HVESTLENATS 76
              V + +++ ++
Sbjct:    67 AVRTRVQHGSN 77

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9W021	RM23_DROME	No assigned EC number	0.6338	0.4522	0.4733	yes	N/A
Q5TUE9	RM23_ANOGA	No assigned EC number	0.6760	0.4522	0.4701	yes	N/A
Q9GYS9	RM23_CAEEL	No assigned EC number	0.3241	0.8216	0.8113	yes	N/A
Q6IQS9	RM23_DANRE	No assigned EC number	0.5070	0.4522	0.4640	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	157
pfam00276	90	pfam00276, Ribosomal_L23, Ribosomal protein L23	0.003

>gnl|CDD|144021 pfam00276, Ribosomal_L23, Ribosomal protein L23

 Score = 34.6 bits (80), Expect = 0.003
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 36 PNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVES 69
          PN   F V       +IK+ +E I+ V V+ V +
Sbjct: 19 PNQYVFIVDKKANKTEIKDAVEHIFGVKVEKVNT 52

Length = 90

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	157
KOG4089|consensus	165		99.9
PF00276	91	Ribosomal_L23: Ribosomal protein L23; InterPro: IP	99.7
PRK05738	92	rplW 50S ribosomal protein L23; Reviewed	99.65
CHL00030	93	rpl23 ribosomal protein L23	99.59
COG0089	94	RplW Ribosomal protein L23 [Translation, ribosomal	99.55
PRK12280	158	rplW 50S ribosomal protein L23; Reviewed	99.46
TIGR03636	77	L23_arch archaeal ribosomal protein L23. This mode	99.42
PRK14548	84	50S ribosomal protein L23P; Provisional	99.4
PTZ00191	145	60S ribosomal protein L23a; Provisional	99.21
KOG1751|consensus	157		98.4

>KOG4089|consensus

Probab=99.90  E-value=1.4e-24  Score=174.54  Aligned_cols=98  Identities=36%  Similarity=0.695  Sum_probs=84.9

Q ss_pred             CC-CccccceecCCCceeEeecCcEEEEeeCCCCCCCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecC----c
Q psy5391           1 MS-SRWYPIYQKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENA----T   75 (157)
Q Consensus         1 ms-~r~ypl~~~G~~q~rIFLPnf~~~LvR~~~~l~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~g----k   75 (157)
                      |+ +|+||+|+.|+||++||||||||.|+||...++|++++|+||++|||+||++||+++||++|.+|+|.+.+|    +
T Consensus         1 m~s~~~y~~~k~gn~q~rVf~Pn~~~~l~rp~~~q~p~~~~FrVp~~m~k~DvR~YL~~iY~l~v~~vrtrl~~Gk~~~~   80 (165)
T KOG4089|consen    1 MGSRRGYRLYKFGNPQLRVFFPNFWINLVRPLVTQPPKIVKFRVPMSMNKFDVRDYLTHIYDLPVVDVRTRLQHGKDYKK   80 (165)
T ss_pred             CcccceeeeeecCCcceeEecchhHHhhhcccccCCCceEEEEcchhhccccHHHHHHHhcCCceeeeeeeeeechhhhc
Confidence            55 779999999999999999999999999998899999999999999999999999999999999999999999    4


Q ss_pred             ceeccccccceecccCCCceeeeee
Q psy5391          76 SMAEWVSWLAFQMTLQPTRTVSTSL  100 (157)
Q Consensus        76 ~KR~~~~~~R~~~~kqP~~k~a~~~  100 (157)
                      .++..++-  ..|.+.=+++.|.+.
T Consensus        81 ~k~r~~~~--k~i~kdmd~p~~Yv~  103 (165)
T KOG4089|consen   81 TKKRLQSP--KRIKKDMDEPVAYVE  103 (165)
T ss_pred             ceeccccc--ceeecccccceeeec
Confidence            44444443  334444478888883

>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.70  E-value=6.8e-17  Score=117.68  Aligned_cols=65  Identities=26%  Similarity=0.287  Sum_probs=55.3

Q ss_pred             CCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcceeccccccceecccCCCceeeeeeeecccccc
Q psy5391          35 PPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLFESYLSSG  108 (157)
Q Consensus        35 ~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~KR~~~~~~R~~~~kqP~~k~a~~~~~~~l~~~  108 (157)
                      .+|+++|+||++|||.|||+|||++|||+|.+|||++.+|+.+| .+.+.    -+.++||+|+|    +|..|
T Consensus        19 ~~n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR-~g~~~----g~~~~~KKaiV----tL~~~   83 (91)
T PF00276_consen   19 NPNQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKR-KGKFV----GKTKDYKKAIV----TLKEG   83 (91)
T ss_dssp             HSSEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEE-SSSCE----EEE-EEEEEEE----EESTT
T ss_pred             cCCEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceE-eCCcc----ccCCCcEEEEE----EeCCC
Confidence            56999999999999999999999999999999999999999888 33332    35699999999    55554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....

>PRK05738 rplW 50S ribosomal protein L23; Reviewed

Probab=99.65  E-value=4e-16  Score=114.36  Aligned_cols=65  Identities=20%  Similarity=0.201  Sum_probs=57.0

Q ss_pred             CcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcceeccccccceecccCCCceeeeeeeecccccch
Q psy5391          36 PNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLFESYLSSGI  109 (157)
Q Consensus        36 pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~KR~~~~~~R~~~~kqP~~k~a~~~~~~~l~~~~  109 (157)
                      +|+++|.|+++|||.|||+|+|++|||+|.+|||++.+|+.||..+     ..-+.++||+|+|    +|.+|.
T Consensus        20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~kr~~~-----~~g~~~~~KKA~V----tL~~g~   84 (92)
T PRK05738         20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKTKRFGR-----RIGKRSDWKKAIV----TLAEGQ   84 (92)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCceeeecc-----cccccCCcEEEEE----EcCCCC
Confidence            7999999999999999999999999999999999999999987743     2446699999999    555553

>CHL00030 rpl23 ribosomal protein L23

Probab=99.59  E-value=3.9e-15  Score=110.06  Aligned_cols=67  Identities=22%  Similarity=0.171  Sum_probs=57.2

Q ss_pred             CCCCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcceeccccccceecccCCCceeeeeeeecccccc
Q psy5391          33 PLPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLFESYLSSG  108 (157)
Q Consensus        33 ~l~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~KR~~~~~~R~~~~kqP~~k~a~~~~~~~l~~~  108 (157)
                      .+..|+++|.|++++||.|||+++|++|||+|.+|||++.+|+.||.. ++    .-..|++|+|+|    +|.+|
T Consensus        16 l~e~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~~k~kr~~-~~----~G~~~~~KKAiV----tL~~g   82 (93)
T CHL00030         16 LLEKNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPRKKRRMG-PI----MGHKMHYKRMII----TLQPG   82 (93)
T ss_pred             hhHCCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcCCCccccC-Cc----ccccCCcEEEEE----EcCCc
Confidence            346799999999999999999999999999999999999999988753 22    245699999999    55554

>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]

Probab=99.55  E-value=1.7e-14  Score=107.42  Aligned_cols=68  Identities=21%  Similarity=0.223  Sum_probs=58.9

Q ss_pred             CCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcceeccccccceecccCCCceeeeeeeecccccchh
Q psy5391          35 PPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLFESYLSSGII  110 (157)
Q Consensus        35 ~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~KR~~~~~~R~~~~kqP~~k~a~~~~~~~l~~~~~  110 (157)
                      ..|+++|.|++++||.|||+++|++|||+|.+|||++++|+.||...+    .+-..+++++|+|    ++..|..
T Consensus        20 ~~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~k~KR~~~k----~~G~~~~~kka~V----~l~~G~~   87 (94)
T COG0089          20 KENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKGKTKRAGVK----RIGLRKDYKKAYV----TLKEGQS   87 (94)
T ss_pred             hCCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeCCcceEEecc----ccccCcccceeEE----EccCCCE
Confidence            459999999999999999999999999999999999999999998654    2335689999999    5555553

>PRK12280 rplW 50S ribosomal protein L23; Reviewed

Probab=99.46  E-value=1.4e-13  Score=110.48  Aligned_cols=63  Identities=17%  Similarity=0.146  Sum_probs=54.9

Q ss_pred             CCCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcceeccccccceecccCCCceeeeeee
Q psy5391          34 LPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLF  101 (157)
Q Consensus        34 l~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~KR~~~~~~R~~~~kqP~~k~a~~~~  101 (157)
                      ++.|+++|.|+++|||.|||+++|.+|||+|.+|||++..|+.+|.+ ++    .-..++|++|+|++
T Consensus        20 ~e~N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~~K~KR~g-~~----~G~~~~~KKAiVtL   82 (158)
T PRK12280         20 MSKNVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVDKKPKRLG-RF----PGFTNSYKKAYVTL   82 (158)
T ss_pred             hhCCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecCCcccccC-Cc----ccccCCcEEEEEEC
Confidence            46699999999999999999999999999999999999999988763 22    34569999999944

>TIGR03636 L23_arch archaeal ribosomal protein L23

Probab=99.42  E-value=4.9e-13  Score=95.96  Aligned_cols=51  Identities=25%  Similarity=0.332  Sum_probs=46.4

Q ss_pred             CcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcceeccccccceecccCCCceeeeeeeecccccc
Q psy5391          36 PNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLFESYLSSG  108 (157)
Q Consensus        36 pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~KR~~~~~~R~~~~kqP~~k~a~~~~~~~l~~~  108 (157)
                      .|+++|.|++++||.|||+++|++|||+|.+|||++.+                  +.+|+|+|    +|..|
T Consensus        14 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~------------------~~~KKA~V----tL~~g   64 (77)
T TIGR03636        14 ENKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP------------------RGEKKAYV----KLAEE   64 (77)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC------------------CCceEEEE----EECCC
Confidence            48999999999999999999999999999999999876                  47999999    55555

This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.

>PRK14548 50S ribosomal protein L23P; Provisional

Probab=99.40  E-value=7.5e-13  Score=96.44  Aligned_cols=51  Identities=24%  Similarity=0.321  Sum_probs=46.6

Q ss_pred             CcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcceeccccccceecccCCCceeeeeeeecccccc
Q psy5391          36 PNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLFESYLSSG  108 (157)
Q Consensus        36 pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~KR~~~~~~R~~~~kqP~~k~a~~~~~~~l~~~  108 (157)
                      .|+++|.|++++||.|||+++|++|||+|.+|||++.+                  +++|||+|    +|+.|
T Consensus        21 ~n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~------------------~~~KKA~V----~L~~g   71 (84)
T PRK14548         21 ENKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP------------------KGEKKAYV----KLAEE   71 (84)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC------------------CCcEEEEE----EeCCC
Confidence            59999999999999999999999999999999999886                  47999999    56555

>PTZ00191 60S ribosomal protein L23a; Provisional

Probab=99.21  E-value=4.1e-11  Score=95.27  Aligned_cols=49  Identities=22%  Similarity=0.273  Sum_probs=44.5

Q ss_pred             CCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcceeccccccceecccCCCceeeeeee
Q psy5391          35 PPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLF  101 (157)
Q Consensus        35 ~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~KR~~~~~~R~~~~kqP~~k~a~~~~  101 (157)
                      ..|+++|.|++++||.|||+++|++|||+|.+|||+|.++                  .+|+|+|+|
T Consensus        81 ~~N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~------------------g~KKA~V~L  129 (145)
T PTZ00191         81 DNNTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD------------------GLKKAYIRL  129 (145)
T ss_pred             hCCEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC------------------CceEEEEEE
Confidence            3599999999999999999999999999999999999877                  578888843

>KOG1751|consensus

Probab=98.40  E-value=3e-07  Score=74.25  Aligned_cols=46  Identities=22%  Similarity=0.320  Sum_probs=41.9

Q ss_pred             CCCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcceec
Q psy5391          34 LPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAE   79 (157)
Q Consensus        34 l~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~KR~   79 (157)
                      -+.|+++|.|+..+||++||+++.++|+++|.+|||+|.+.+.|+-
T Consensus        92 ednNtlvf~vd~kankhqiKqAVkkLyd~dvakvntli~p~g~kka  137 (157)
T KOG1751|consen   92 EDNNTLVFIVDSKANKHQIKQAVKKLYDTDVAKVNTLIRPDGEKKA  137 (157)
T ss_pred             hhCceeEEEEecccchHHHHHHHHHHhccchhhheeeecCCCceeE
Confidence            4679999999999999999999999999999999999977776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	157
3tve_T	92	50S ribosomal protein L23; RNA, ribosome, tRNA, tr	99.64
3r8s_T	93	50S ribosomal protein L23; protein biosynthesis, R	99.63
2zjr_Q	95	50S ribosomal protein L23; ribosome, large ribosom	99.61
1vq8_S	85	50S ribosomal protein L23P; ribosome 50S, protein-	99.42
3j21_T	86	50S ribosomal protein L23P; archaea, archaeal, KIN	99.37
2zkr_s	156	60S ribosomal protein L23A; protein-RNA complex, 6	99.27
3u5e_X	142	60S ribosomal protein L25; translation, ribosome,	99.23
4a17_R	150	RPL23A, 60S ribosomal protein L21; eukaryotic ribo	99.21
3iz5_X	152	60S ribosomal protein L23A (L23P); eukaryotic ribo	99.16
3bbo_V	198	Ribosomal protein L23; large ribosomal subunit, sp	99.15

>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...

Probab=99.64  E-value=5.2e-16  Score=113.39  Aligned_cols=65  Identities=18%  Similarity=0.170  Sum_probs=56.2

Q ss_pred             CCCCCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcceeccccccceecccCCCceeeeeee
Q psy5391          32 EPLPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLF  101 (157)
Q Consensus        32 ~~l~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~KR~~~~~~R~~~~kqP~~k~a~~~~  101 (157)
                      ..++.|+++|.|+++|||.|||+++|++|||+|.+|||++.+||.||.+.     .+-+.+++|+|+|++
T Consensus        17 ~~~e~n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK~kR~g~-----~~G~~~~~KKA~VtL   81 (92)
T 3tve_T           17 AGFAEGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGR-----YLGKRPDRKKAIVQV   81 (92)
T ss_dssp             TTTTTTEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCCEEESSS-----CEEECCCEEEEEEEE
T ss_pred             HHhhCCEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCceeeecc-----ccccCCCceEEEEEc
Confidence            34556999999999999999999999999999999999999999887642     244569999999944

>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...

Probab=99.63  E-value=6.7e-16  Score=113.00  Aligned_cols=64  Identities=17%  Similarity=0.232  Sum_probs=55.9

Q ss_pred             CcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcceeccccccceecccCCCceeeeeeeecccccc
Q psy5391          36 PNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLFESYLSSG  108 (157)
Q Consensus        36 pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~KR~~~~~~R~~~~kqP~~k~a~~~~~~~l~~~  108 (157)
                      .|+++|.|+++|||.|||+++|++|||+|.+|||++.+||.||.+.     ..-+.+++|+|+|    +|..|
T Consensus        27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~kR~g~-----~~G~~~~~KKAiV----tL~~g   90 (93)
T 3r8s_T           27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQ-----RIGRRSDWKKAYV----TLKEG   90 (93)
T ss_dssp             TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCBCCSSS-----SCCBCCCEEEEEE----ECCSC
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCceeeeCC-----ccccCCCcEEEEE----EcCCc
Confidence            4999999999999999999999999999999999999999887632     2445699999999    55554

>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U

Probab=99.61  E-value=7.1e-16  Score=113.25  Aligned_cols=63  Identities=14%  Similarity=0.153  Sum_probs=55.0

Q ss_pred             CCCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcceeccccccceecccCCCceeeeeee
Q psy5391          34 LPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLF  101 (157)
Q Consensus        34 l~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~KR~~~~~~R~~~~kqP~~k~a~~~~  101 (157)
                      ++.|+++|.|+++|||.|||+++|++|||+|.+|||++.+||.||.+ +    .+-+.+++|+|+|++
T Consensus        20 ~e~n~y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~gK~kR~g-~----~~G~~~~~KKAiVtL   82 (95)
T 2zjr_Q           20 MERGVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVG-R----FIGQRNDRKKAIVRL   82 (95)
T ss_dssp             HTTTCCEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCCCCSSS-S----CCCCCCCBEEEEEEC
T ss_pred             HHCCEEEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCCccceec-c----ccccCCCcEEEEEEe
Confidence            45677999999999999999999999999999999999999988752 2    245679999999944

>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...

Probab=99.42  E-value=3.4e-13  Score=97.35  Aligned_cols=52  Identities=21%  Similarity=0.259  Sum_probs=46.5

Q ss_pred             CcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcceeccccccceecccCCCceeeeeeeecccccch
Q psy5391          36 PNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLFESYLSSGI  109 (157)
Q Consensus        36 pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~KR~~~~~~R~~~~kqP~~k~a~~~~~~~l~~~~  109 (157)
                      .|+++|.|++++||.|||+++|++|||+|.+|||++.+                  +++|+|+|    +|..|-
T Consensus        22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~------------------~~~KKA~V----tL~~g~   73 (85)
T 1vq8_S           22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTM------------------DGEKKAVV----RLSEDD   73 (85)
T ss_dssp             SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT------------------TSSEEEEE----EECTTS
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecC------------------CCceEEEE----EECCCC
Confidence            58999999999999999999999999999999999976                  25999999    555553

>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.37  E-value=1.3e-12  Score=94.56  Aligned_cols=48  Identities=27%  Similarity=0.359  Sum_probs=43.7

Q ss_pred             CcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcceeccccccceecccCCCceeeeeee
Q psy5391          36 PNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLF  101 (157)
Q Consensus        36 pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~KR~~~~~~R~~~~kqP~~k~a~~~~  101 (157)
                      .|+++|.|++++||.|||+++|++|||+|.+|||++.++                  .+|+|+|++
T Consensus        23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~------------------~~KKA~V~L   70 (86)
T 3j21_T           23 ENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR------------------GEKKAYVKL   70 (86)
T ss_dssp             SCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT------------------SCEEEEEEE
T ss_pred             CCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC------------------CceEEEEEc
Confidence            699999999999999999999999999999999999862                  478999933

>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=99.27  E-value=8.5e-12  Score=98.97  Aligned_cols=52  Identities=21%  Similarity=0.361  Sum_probs=47.1

Q ss_pred             CcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcceeccccccceecccCCCceeeeeeeecccccch
Q psy5391          36 PNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLFESYLSSGI  109 (157)
Q Consensus        36 pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~KR~~~~~~R~~~~kqP~~k~a~~~~~~~l~~~~  109 (157)
                      .|+++|.|++++||.|||+++|++|||+|.+|||++.+|                  ++|+|+|    +|..|-
T Consensus        93 ~n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~------------------~~KKAiV----tL~~g~  144 (156)
T 2zkr_s           93 NNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPD------------------GEKKAYV----RLAPDY  144 (156)
T ss_dssp             HCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSS------------------SCEEEEE----EECTTS
T ss_pred             CCcEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCC------------------CceEEEE----EECCCC
Confidence            389999999999999999999999999999999999987                  4899999    666553

>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T

Probab=99.23  E-value=1.5e-11  Score=96.24  Aligned_cols=48  Identities=19%  Similarity=0.323  Sum_probs=44.1

Q ss_pred             CcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcceeccccccceecccCCCceeeeeee
Q psy5391          36 PNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLF  101 (157)
Q Consensus        36 pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~KR~~~~~~R~~~~kqP~~k~a~~~~  101 (157)
                      .|+++|.|+.++||.|||+++|++|||+|.+|||++.++                  ++|+|+|++
T Consensus        79 ~N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~------------------g~KKAyV~L  126 (142)
T 3u5e_X           79 GNILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPN------------------GTKKAYVRL  126 (142)
T ss_dssp             HCEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTT------------------SCEEEEEEE
T ss_pred             CCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC------------------CceEEEEEe
Confidence            499999999999999999999999999999999999875                  588999943

>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R

Probab=99.21  E-value=2.3e-11  Score=96.07  Aligned_cols=48  Identities=27%  Similarity=0.284  Sum_probs=44.1

Q ss_pred             CcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcceeccccccceecccCCCceeeeeee
Q psy5391          36 PNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLF  101 (157)
Q Consensus        36 pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~KR~~~~~~R~~~~kqP~~k~a~~~~  101 (157)
                      .|+++|.|+.++||.|||+++|++|||+|.+|||++.++                  ++++|+|++
T Consensus        87 ~N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~------------------g~KKAyV~L  134 (150)
T 4a17_R           87 ENTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTIT------------------GNKKAYIRL  134 (150)
T ss_dssp             SSEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT------------------SCEEEEEEE
T ss_pred             CCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC------------------CcEEEEEEc
Confidence            699999999999999999999999999999999999875                  478888843

>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=99.15  E-value=9.2e-12  Score=101.90  Aligned_cols=53  Identities=15%  Similarity=0.248  Sum_probs=47.7

Q ss_pred             CCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcceeccccccceecccCCCceeeeeeeecccccch
Q psy5391          35 PPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLFESYLSSGI  109 (157)
Q Consensus        35 ~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~KR~~~~~~R~~~~kqP~~k~a~~~~~~~l~~~~  109 (157)
                      ..|+++|.|++++||.|||+++|++|||+|.+|||++.+|                  ++|||+|    +|..|-
T Consensus       130 ~nNkyvF~Vd~kANK~QIKqAVEkLFdVKV~kVNTln~~g------------------g~KKAyV----tLaeG~  182 (198)
T 3bbo_V          130 DENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPD------------------GTKKAYI----MLNKEY  182 (198)
T ss_dssp             TSCEECCEECTTCCHHHHHHTTTTTSCCCEEECCCEEETT------------------TEEECCE----EECTTT
T ss_pred             hCCEEEEEECCCCCHHHHHHHHHHHhCCceeEEEeeEcCC------------------CeEEEEE----EeCCCC
Confidence            3489999999999999999999999999999999999997                  4899999    666653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	157
d2qamt1	93	d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherich	7e-04
d2zjrq1	93	d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococc	7e-04
d2j01x1	93	d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus t	0.001
d1vqos1	81	d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon	0.004

>d2qamt1 d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherichia coli [TaxId: 562]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Escherichia coli [TaxId: 562]

 Score = 34.7 bits (80), Expect = 7e-04
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 37 NVVEFHVPLAMTNHDIKNYLEKIYNVTVKHV 67
          N +   V    T  +IK  ++K++ V V+ V
Sbjct: 28 NTIVLKVAKDATKAEIKAAVQKLFEVEVEVV 58

>d2zjrq1 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococcus radiodurans [TaxId: 1299]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 34.7 bits (80), Expect = 7e-04
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 37 NVVEFHVPLAMTNHDIKNYLEKIYNVTVKHV 67
           V  F V    T  +IK+ +++ + V V  +
Sbjct: 22 GVYSFWVSPKATKTEIKDAIQQAFGVRVIGI 52

>d2j01x1 d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus thermophilus [TaxId: 274]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Thermus thermophilus [TaxId: 274]

 Score = 33.9 bits (78), Expect = 0.001
 Identities = 10/33 (30%), Positives = 14/33 (42%)

Query: 37 NVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVES 69
              F V    T  +IKN +E  + V V  V +
Sbjct: 22 GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNT 54

>d1vqos1 d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 81

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 32.4 bits (74), Expect = 0.004
 Identities = 9/31 (29%), Positives = 19/31 (61%)

Query: 37 NVVEFHVPLAMTNHDIKNYLEKIYNVTVKHV 67
          N ++F V    +  ++ + +E+ Y+VTV+ V
Sbjct: 22 NKLQFAVDDRASKGEVADAVEEQYDVTVEQV 52

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	157
d2zjrq1	93	Ribosomal protein L23 {Deinococcus radiodurans [Ta	99.57
d2qamt1	93	Ribosomal protein L23 {Escherichia coli [TaxId: 56	99.56
d2j01x1	93	Ribosomal protein L23 {Thermus thermophilus [TaxId	99.51
d1vqos1	81	Ribosomal protein L23 {Archaeon Haloarcula marismo	99.34
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	88.43

>d2zjrq1 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.57  E-value=1.2e-15  Score=109.84  Aligned_cols=65  Identities=17%  Similarity=0.177  Sum_probs=56.8

Q ss_pred             CCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcceeccccccceecccCCCceeeeeeeecccccc
Q psy5391          35 PPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLFESYLSSG  108 (157)
Q Consensus        35 ~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~KR~~~~~~R~~~~kqP~~k~a~~~~~~~l~~~  108 (157)
                      ..|+++|.|+++|||.|||+++|++|||+|.+|||++.+|+.||..+     .+-..+++|+|+|    +|..|
T Consensus        20 e~n~y~F~V~~~atK~~Ik~ave~lf~VkV~~Vnt~~~~gK~kr~~~-----~~g~~~~~KKAiV----tL~~g   84 (93)
T d2zjrq1          20 ERGVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVGR-----FIGQRNDRKKAIV----RLAEG   84 (93)
T ss_dssp             TTTCCEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCCCCSSSS-----CCCCCCCBEEEEE----ECCSS
T ss_pred             HCCEEEEEEeCCCCHHHHHHHHHHHcCCCeEEEEEEEeCCCceEECC-----cceecCCCEEEEE----EcCCc
Confidence            56999999999999999999999999999999999999999887532     3456799999999    55554

>d2qamt1 d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=4e-16  Score=112.25  Aligned_cols=65  Identities=17%  Similarity=0.225  Sum_probs=57.3

Q ss_pred             CCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcceeccccccceecccCCCceeeeeeeecccccc
Q psy5391          35 PPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLFESYLSSG  108 (157)
Q Consensus        35 ~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~KR~~~~~~R~~~~kqP~~k~a~~~~~~~l~~~  108 (157)
                      ..|+++|.|+++|||.|||+++|++|||+|.+|||++..|+.+|..+     .+-+.+++|+|+|    +|.+|
T Consensus        26 ~~n~ytF~V~~~AtK~eIK~ave~~f~VkV~~Vnt~~~~gK~kr~~~-----~~g~~~~~KKAiV----tL~~g   90 (93)
T d2qamt1          26 KSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQ-----RIGRRSDWKKAYV----TLKEG   90 (93)
T ss_dssp             HSSCCCEEECSSCCSHHHHHHHHHTTCCCCCCCCCEEECCCEECSTT-----CCEECCCEEECCC----CCSSC
T ss_pred             hCCEEEEEECCCCCHHHHHHHHHHHhCCcceEEEEEEeCCceeEeCC-----cccccCCCEEEEE----EcCCC
Confidence            35899999999999999999999999999999999999999887643     3446799999999    77666

>d2j01x1 d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Thermus thermophilus [TaxId: 274]

Probab=99.51  E-value=5e-16  Score=111.64  Aligned_cols=65  Identities=20%  Similarity=0.234  Sum_probs=57.9

Q ss_pred             CCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcceeccccccceecccCCCceeeeeeeecccccc
Q psy5391          35 PPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLFESYLSSG  108 (157)
Q Consensus        35 ~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~KR~~~~~~R~~~~kqP~~k~a~~~~~~~l~~~  108 (157)
                      ..|+++|.|+++|||.|||+++|++|||+|.+|||++.+|+.+|.     +..+-+.+++|+|+|    +|.+|
T Consensus        20 e~n~y~F~V~~~atK~eIK~ave~~f~VkV~~Vnt~~~~gK~kr~-----~~~~g~~~~~KKA~V----~L~~g   84 (93)
T d2j01x1          20 AEGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRL-----GRYLGKRPDRKKAIV----QVAPG   84 (93)
T ss_dssp             TSSCCCEECCSSSCCTTCHHHHTTTTTCCCCCBCCCCCCCCCCSS-----CCCCSCCCCBCCBCC----STTTC
T ss_pred             hCCeEEEEEeCCCCHHHHHHHHHHHhCCCeeEEEEEEeCCceeEe-----CCcccccCCCEEEEE----EcCCc
Confidence            569999999999999999999999999999999999999998775     345567799999999    66665

>d1vqos1 d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.34  E-value=1.1e-12  Score=92.22  Aligned_cols=42  Identities=21%  Similarity=0.297  Sum_probs=39.3

Q ss_pred             CCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcc
Q psy5391          35 PPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATS   76 (157)
Q Consensus        35 ~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~   76 (157)
                      ..|+++|.|++++||.|||+++|++|||+|.+|||++.+|+.
T Consensus        20 ~~n~y~F~V~~~A~K~~IK~AVe~lf~VkV~~Vnt~~~~~~~   61 (81)
T d1vqos1          20 FQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGE   61 (81)
T ss_dssp             HSCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSS
T ss_pred             hCCEEEEEEcCcCCHHHHHHHHHHHcCCceeEEEEeEcCCCc
Confidence            369999999999999999999999999999999999988773

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.43  E-value=1.1  Score=28.88  Aligned_cols=81  Identities=15%  Similarity=0.244  Sum_probs=48.5

Q ss_pred             CCCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcceeccccccceecccCCCceeeeeeeecccccchhhHH
Q psy5391          34 LPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLFESYLSSGIITSA  113 (157)
Q Consensus        34 l~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~KR~~~~~~R~~~~kqP~~k~a~~~~~~~l~~~~~~~~  113 (157)
                      ...+-..--+|.++|..||++++++ || +|.+|+-.....     .++. | +        =|+|.|.+.      +++
T Consensus         7 ~~~~lfV~nLp~~~te~~l~~~F~~-~G-~i~~v~i~~d~~-----tg~s-r-G--------~aFV~f~~~------~~a   63 (90)
T d2cqga1           7 KTSDLIVLGLPWKTTEQDLKEYFST-FG-EVLMVQVKKDLK-----TGHS-K-G--------FGFVRFTEY------ETQ   63 (90)
T ss_dssp             CCCCEEEESCCSSCCHHHHHHHHGG-GS-CEEEEEEEECSS-----SCSE-E-E--------EEEEEESSH------HHH
T ss_pred             CCCeEEEECCCCCCCHHHHHHHHHh-hc-ccceeeeccCCC-----Cccc-C-C--------EEEEEECCH------HHH
Confidence            3445566678999999999999998 78 788886553211     1111 1 2        388888665      333


Q ss_pred             HHHhHhhhhccccceeeCCceecc
Q psy5391         114 KRLMKCIKLQNGLFIKINPIGTKD  137 (157)
Q Consensus       114 k~~~~~~~~~~~~~~~~np~~tk~  137 (157)
                      ....+....-+|--|.++++..|+
T Consensus        64 ~~al~~~~~l~Gr~i~v~~a~~k~   87 (90)
T d2cqga1          64 VKVMSQRHMIDGRWCDCKLPNSKQ   87 (90)
T ss_dssp             HHHHHSCEEETTEEEEEECCCTTC
T ss_pred             HHHHhcCCccCCEEeEEEeCCCCC
Confidence            333222223356666666665543