Psyllid ID: psy5395

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
Protein Sequence
MLRNWCFFCLSLVFSLKYVLSGSMQAVTASTSDESAPWYENLPAVAMDYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYEWKKNAEYQDTPPHGGYYSVCIDNQFSRNAGKLVNMYLTVVRYDQWDKYHKEIEDLNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQILVIAATTTVQVYFVRQLFNSKTNKPRA
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEEEEccccccEEEEEcccccEEEEEEEEEEcccccEEEEEEcccccEEEEcccccccEEEEcccccEEEEEEEEccccccccEEEEEEEEEEEEccccccccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHccccccccEEEEEEcccccHHEEEEcccccEEEEEEEEEEcccccEEEEEEcccccEEEEcEEEcccEEEEEEEcccEEEEEEcccccccccEEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MLRNWCFFCLSLVFSLKYVLsgsmqavtastsdesapwyenlpavamdykihidpgkedcffqyvnpgatfyvnfqvlrggdgmagfavrnpngqivhpyewkknaeyqdtpphggyysVCIDnqfsrnagkLVNMYLTVVRYDQWDKYHKEIEDLNVSVQNFTDSVRTVERNINEILQQQYHARSReardfnllednnryVMNWSVIQILVIAATTTVQVYFVRQLFnsktnkpra
Flexible Loop (DISEMBL)
MLRNWCFFCLSLVFSLKYVLSGSMQAVTastsdesapwYENLPAVAMDYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYEWKKNAEYQDTPPHGGYYSVCIDNQFSRNAGKLVNMYLTVVRYDQWDKYHKEIEDLNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQILVIAATTTVQVYFVRQlfnsktnkpra
Low Complexity Region (SEG)
MLRNWCFFCLSLVFSLKYVLSGSMQAVTASTSDESAPWYENLPAVAMDYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYEWKKNAEYQDTPPHGGYYSVCIDNQFSRNAGKLVNMYLTVVRYDQWDKYHKEIEDLNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQILVIAATTTVQVYFVRQLFNSKTNKPRA
Disordered region (IsUnstruct)
**RNWCFFCLSLVFSLKYVLSGSMQAVTA*****SAPWYENLPAVAMDYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYEWKKNAEYQDTPPHGGYYSVCIDNQFSRNAGKLVNMYLTVVRYDQWDKYHKEIEDLNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQILVIAATTTVQVYFVRQLF*********
Disordered Region (DISOPRED)
******FFCLSLVFSLKYVLSGSMQAVTASTSDESAPWYENLPAVAMDYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRGGDGMAGFAVRNPNGQIVH********EYQDTPPHGGYYSVCIDNQFSRNAGKLVNMYLTVVRYDQW*************VQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQILVIAATTTVQVYFVRQLF**KT*****
Disordered Region (DISEMBL)
MLRNWCFFCLSLVFSLKYVLSGSM**********SAPWYENLPAVAMDYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYEWKKNAEYQDTPPHGGYYSVCIDNQFSRNAGKLVNMYLTVVRYDQWDKYHKEIEDLNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQILVIAATTTVQVYFVRQLFN********
Disordered Region (DISPRO)
MLRNWCFFCLSLVFSLKYVLSGSMQ******SDESAPWYENLPAVAMDYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYEWKKNAEYQDTPPHGGYYSVCIDNQFSRNAGKLVNMYLTVVRYDQWDKYHKEIEDLNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQILVIAATTTVQVYFVRQLFNSK******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLRNWCFFCLSLVFSLKYVLSGSMQAVTASTSDESAPWYENLPAVAMDYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYEWKKNAEYQDTPPHGGYYSVCIDNQFSRNAGKLVNMYLTVVRYDQWDKYHKEIEDLNVSxxxxxxxxxxxxxxxxxxxxxQYHARSREARDFNLLEDNNRYVMNWSVIQILVIAATTTVQVYFVRQLFNSKTNKPRA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	237	2.2.26 [Sep-21-2011]
Q0VCA9	240	Transmembrane emp24 domai	yes	N/A	0.776	0.766	0.336	1e-17
Q8WW62	240	Transmembrane emp24 domai	yes	N/A	0.902	0.891	0.296	1e-16
Q28BQ6	220	Transmembrane emp24 domai	no	N/A	0.742	0.8	0.274	2e-16
Q6AXN3	229	Transmembrane emp24 domai	yes	N/A	0.793	0.820	0.270	1e-15
Q9CXE7	229	Transmembrane emp24 domai	yes	N/A	0.793	0.820	0.270	2e-15
Q9Y3A6	229	Transmembrane emp24 domai	no	N/A	0.793	0.820	0.255	2e-14
Q5R809	229	Transmembrane emp24 domai	no	N/A	0.793	0.820	0.255	3e-14
Q2KJ84	226	Transmembrane emp24 domai	no	N/A	0.793	0.831	0.255	5e-14
Q54BN0	209	Transmembrane emp24 domai	yes	N/A	0.738	0.837	0.218	8e-14
Q5BK85	227	Transmembrane emp24 domai	no	N/A	0.793	0.828	0.257	1e-13

>sp|Q0VCA9|TMED6_BOVIN Transmembrane emp24 domain-containing protein 6 OS=Bos taurus GN=TMED6 PE=2 SV=1

 Score = 90.1 bits (222), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 101/202 (50%), Gaps = 18/202 (8%)

Query: 48  DYKIHIDPGKEDCFFQYVNPGATFYVNFQVLR----GGDGMAGFAVRNPNGQIVHPYEWK 103
           D+ I I PG  +CF+Q+ +    FY +++V R      D         P G ++   E  
Sbjct: 43  DFAIVIPPGGTECFWQFAHQTGYFYFSYEVQRTIGMSHDRHVAATAHTPQGFLI---ETS 99

Query: 104 KNAEYQD--TPPHGGYYSVCIDNQFSRNAGKLVNMYLTV-VRYDQWDKYHKEIE--DLNV 158
           KN   Q   +    G+Y +C+ NQ +R A   V +YL   V Y+  +  HKE E   LN 
Sbjct: 100 KNVRGQINFSTHETGFYQLCLANQQNRFAS--VQVYLNFGVFYEGPEMDHKENERKQLND 157

Query: 159 SVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQILVIAATTT 218
           ++    +S R V  NI  + +    AR R+  DF LL+ N  YV  WS  Q LVI  +  
Sbjct: 158 TLDAIEESTRKVHYNIFHMWRHYNFARMRKTADFFLLQSNYNYVNWWSTAQSLVIVLSGI 217

Query: 219 VQVYFVRQLFN----SKTNKPR 236
           +Q+YF+++LFN    ++T KPR
Sbjct: 218 LQLYFLKRLFNTPMTTETQKPR 239

Bos taurus (taxid: 9913)

>sp|Q8WW62|TMED6_HUMAN Transmembrane emp24 domain-containing protein 6 OS=Homo sapiens GN=TMED6 PE=2 SV=2

 Score = 86.7 bits (213), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 108/236 (45%), Gaps = 22/236 (9%)

Query: 16  LKYVLSGSMQAVTASTSDESAPWYENLPAVAMDYKIHIDPGKEDCFFQYVNPGATFYVNF 75
           L  V S   Q     +     P +    A   D+ I I PG  +CF+Q+ +    FY ++
Sbjct: 13  LNLVTSARSQKTEPLSGSGDQPLFRG--ADRYDFAIMIPPGGTECFWQFAHQTGYFYFSY 70

Query: 76  QVLR----GGDGMAGFAVRNPNGQIVHPYEWKK---NAEYQDTPPHGGYYSVCIDNQFSR 128
           +V R      D        NP G ++   +  +   N   Q+T    G+Y +C+ NQ   
Sbjct: 71  EVQRTVGMSHDRHVAATAHNPQGFLIDTSQGVRGQINFSTQET----GFYQLCLSNQ--H 124

Query: 129 NAGKLVNMYLTV-VRYD--QWDKYHKEIEDLNVSVQNFTDSVRTVERNINEILQQQYHAR 185
           N    V +YL   V Y+  + D   KE + LN ++    D  + V+ NI  + +    AR
Sbjct: 125 NHFGSVQVYLNFGVFYEGPETDHKQKERKQLNDTLDAIEDGTQKVQNNIFHMWRYYNFAR 184

Query: 186 SREARDFNLLEDNNRYVMNWSVIQILVIAATTTVQVYFVRQLFN----SKTNKPRA 237
            R+  DF L++ N  YV  WS  Q LVI  +  +Q+YF+++LFN    + T KPR 
Sbjct: 185 MRKMADFFLIQSNYNYVNWWSTAQSLVIILSGILQLYFLKRLFNVPTTTDTKKPRC 240

Homo sapiens (taxid: 9606)

>sp|Q28BQ6|TMED1_XENTR Transmembrane emp24 domain-containing protein 1 OS=Xenopus tropicalis GN=tmed1 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 6/182 (3%)

Query: 56  GKEDCFFQYVNPGATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYEWKKNAEYQDTPPHG 115
           G+++CF+Q      +  + +QV+ G      F+V  P+G ++     + +  +   P   
Sbjct: 34  GRQECFYQTTLYNGSMEIEYQVIGGAGLDVDFSVTTPSGILLIMERRRSDGVHTVEPTEA 93

Query: 116 GYYSVCIDNQFSRNAGKLVNMYLTV------VRYDQWDKYHKEIEDLNVSVQNFTDSVRT 169
           G Y +C DN FS  + KLV   L           D W    +  E L++ +++  +S+ +
Sbjct: 94  GDYMICFDNSFSTISEKLVFFELIFDNQQGDEEPDSWADVVEPDELLDIKLEDIKESIES 153

Query: 170 VERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQILVIAATTTVQVYFVRQLFN 229
           V+  +   +Q Q   R+ EARD NL + N   V  WS I + V+     +QVY ++ LF+
Sbjct: 154 VKSRLERSIQMQTVLRAFEARDRNLQDSNLERVNFWSAINVGVLVTVAFLQVYMLKSLFD 213

Query: 230 SK 231
            K
Sbjct: 214 DK 215

Potential role in vesicular protein trafficking, mainly in the early secretory pathway. May act as a cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and may be involved in vesicle coat formation at the cytoplasmic side.

Xenopus tropicalis (taxid: 8364)

>sp|Q6AXN3|TMED5_RAT Transmembrane emp24 domain-containing protein 5 OS=Rattus norvegicus GN=Tmed5 PE=2 SV=1

 Score = 83.6 bits (205), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 100/196 (51%), Gaps = 8/196 (4%)

Query: 43  PAVAMDYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYEW 102
           P++  D+   +  G+++CF+Q +   A+  + +QVL GG+    F + +P G+ +  +E 
Sbjct: 30  PSLDSDFTFTLPAGQKECFYQPMPLKASLEIEYQVLDGGELDIDFHLASPEGRTL-VFEQ 88

Query: 103 KKNAEYQDTPPHGGYYSVCIDNQFSRNAGKLV-------NMYLTVVRYDQWDKYHKEIED 155
           +K+          G Y  C DN FS  + K++       NM   V   + W KY    + 
Sbjct: 89  RKSDGVHTVETEDGDYMFCFDNTFSTISEKVIFFELILDNMGEEVEGQEDWKKYITNTDV 148

Query: 156 LNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQILVIAA 215
           L + +++  +S+ +++  +++    Q   R+ EARD N+ E N   V  WSV+ ++V+  
Sbjct: 149 LEMKLEDILESINSIKSRLSKSGHIQTLLRAFEARDRNIQESNFDRVNFWSVVNLMVMVV 208

Query: 216 TTTVQVYFVRQLFNSK 231
            + +QVY ++ LF  K
Sbjct: 209 VSAIQVYTLKSLFEDK 224

Potential role in vesicular protein trafficking, mainly in the early secretory pathway. Required for the maintenance of the Golgi apparatus; involved in protein exchange between Golgi stacks during assembly. Probably not required for COPI-vesicle-mediated retrograde transport.

Rattus norvegicus (taxid: 10116)

>sp|Q9CXE7|TMED5_MOUSE Transmembrane emp24 domain-containing protein 5 OS=Mus musculus GN=Tmed5 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 100/196 (51%), Gaps = 8/196 (4%)

Query: 43  PAVAMDYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYEW 102
           P++  D+   +  G+++CF+Q +   A+  + +QVL GG+    F + +P G+ +  +E 
Sbjct: 30  PSLDSDFTFTLPAGRKECFYQPMPLKASLEIEYQVLDGGELDIDFHLTSPEGRTL-VFEQ 88

Query: 103 KKNAEYQDTPPHGGYYSVCIDNQFSRNAGKLV-------NMYLTVVRYDQWDKYHKEIED 155
           +K+          G Y  C DN FS  + K++       NM   V   + W KY    + 
Sbjct: 89  RKSDGVHTIETEDGDYMFCFDNTFSTISEKVIFFELILDNMGEEVQGQEDWKKYITNTDV 148

Query: 156 LNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQILVIAA 215
           L + +++  +S+ +++  +++    Q   R+ EARD N+ E N   V  WSV+ ++V+  
Sbjct: 149 LEMKLEDILESINSIKSRLSKSGHIQTLLRAFEARDRNIQESNFDRVNFWSVVNLMVMVV 208

Query: 216 TTTVQVYFVRQLFNSK 231
            + +QVY ++ LF  K
Sbjct: 209 VSAIQVYTLKSLFEDK 224

Potential role in vesicular protein trafficking, mainly in the early secretory pathway. Required for the maintenance of the Golgi apparatus; involved in protein exchange between Golgi stacks during assembly. Probably not required for COPI-vesicle-mediated retrograde transport.

Mus musculus (taxid: 10090)

>sp|Q9Y3A6|TMED5_HUMAN Transmembrane emp24 domain-containing protein 5 OS=Homo sapiens GN=TMED5 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 98/196 (50%), Gaps = 8/196 (4%)

Query: 43  PAVAMDYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYEW 102
           P++  D+   +  G+++CF+Q +   A+  + +QVL G      F + +P G+ +  +E 
Sbjct: 30  PSLDSDFTFTLPAGQKECFYQPMPLKASLEIEYQVLDGAGLDIDFHLASPEGKTL-VFEQ 88

Query: 103 KKNAEYQDTPPHGGYYSVCIDNQFSRNAGKLV-------NMYLTVVRYDQWDKYHKEIED 155
           +K+          G Y  C DN FS  + K++       NM       + W KY    + 
Sbjct: 89  RKSDGVHTVETEVGDYMFCFDNTFSTISEKVIFFELILDNMGEQAQEQEDWKKYITGTDI 148

Query: 156 LNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQILVIAA 215
           L++ +++  +S+ +++  +++    Q   R+ EARD N+ E N   V  WS++ ++V+  
Sbjct: 149 LDMKLEDILESINSIKSRLSKSGHIQTLLRAFEARDRNIQESNFDRVNFWSMVNLVVMVV 208

Query: 216 TTTVQVYFVRQLFNSK 231
            + +QVY ++ LF  K
Sbjct: 209 VSAIQVYMLKSLFEDK 224

Potential role in vesicular protein trafficking, mainly in the early secretory pathway. Required for the maintenance of the Golgi apparatus; involved in protein exchange between Golgi stacks during assembly. Probably not required for COPI-vesicle-mediated retrograde transport.

Homo sapiens (taxid: 9606)

>sp|Q5R809|TMED5_PONAB Transmembrane emp24 domain-containing protein 5 OS=Pongo abelii GN=TMED5 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 97/196 (49%), Gaps = 8/196 (4%)

Query: 43  PAVAMDYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYEW 102
           P++  D+   +  G+ +CF+Q +   A+  + +QVL G      F + +P G+ +  +E 
Sbjct: 30  PSLDSDFTFTLPAGQRECFYQPMPLKASLEIEYQVLDGAGLDIDFHLASPEGKTL-VFEQ 88

Query: 103 KKNAEYQDTPPHGGYYSVCIDNQFSRNAGKLV-------NMYLTVVRYDQWDKYHKEIED 155
           +K+          G Y  C DN FS  + K++       NM       + W KY    + 
Sbjct: 89  RKSDGVHTVETEVGDYMFCFDNTFSTISEKVIFFELILDNMGEQAQEQEDWKKYITGTDM 148

Query: 156 LNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQILVIAA 215
           L++ +++  +S+ +++  +++    Q   R+ EARD N+ E N   V  WS++ ++V+  
Sbjct: 149 LDMKLEDILESINSIKSRLSKSGHIQTLLRAFEARDRNIQESNFDRVNFWSMVNLVVMVV 208

Query: 216 TTTVQVYFVRQLFNSK 231
            + +QVY ++ LF  K
Sbjct: 209 VSAIQVYMLKSLFEDK 224

Potential role in vesicular protein trafficking, mainly in the early secretory pathway. Required for the maintenance of the Golgi apparatus; involved in protein exchange between Golgi stacks during assembly. Probably not required for COPI-vesicle-mediated retrograde transport.

Pongo abelii (taxid: 9601)

>sp|Q2KJ84|TMED5_BOVIN Transmembrane emp24 domain-containing protein 5 OS=Bos taurus GN=TMED5 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 98/196 (50%), Gaps = 8/196 (4%)

Query: 43  PAVAMDYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYEW 102
           P++  D+   +  G+++CF+Q +   A+  + +QVL G      F + +P G+ +  +E 
Sbjct: 27  PSLDSDFTFTLPAGQKECFYQPMPLKASLEIEYQVLDGAGLDIDFHLASPEGKTL-VFEQ 85

Query: 103 KKNAEYQDTPPHGGYYSVCIDNQFSRNAGKLV-------NMYLTVVRYDQWDKYHKEIED 155
           +K+          G Y  C DN FS  + K++       NM       + W KY    + 
Sbjct: 86  RKSDGVHTIETEVGDYMFCFDNTFSTISEKVIFFELILDNMGEQEQEQEDWKKYITGTDM 145

Query: 156 LNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQILVIAA 215
           L++ +++  +S+ +++  +++    Q   R+ EARD N+ E N   V  WS++ ++V+  
Sbjct: 146 LDMKLEDILESINSIKSRLSKSGHIQTLLRAFEARDRNIQESNFDRVNFWSMVNLVVMVV 205

Query: 216 TTTVQVYFVRQLFNSK 231
            + +QVY ++ LF  K
Sbjct: 206 VSAIQVYMLKSLFEDK 221

Potential role in vesicular protein trafficking, mainly in the early secretory pathway. Required for the maintenance of the Golgi apparatus; involved in protein exchange between Golgi stacks during assembly. Probably not required for COPI-vesicle-mediated retrograde transport.

Bos taurus (taxid: 9913)

>sp|Q54BN0|TMEDB_DICDI Transmembrane emp24 domain-containing protein B OS=Dictyostelium discoideum GN=empB PE=3 SV=1

 Score = 77.4 bits (189), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 91/188 (48%), Gaps = 13/188 (6%)

Query: 51  IHIDPGKEDCFFQYVNPGATFYVNFQVLRGGDGMAGFAVRNPNGQIVHP---YEWKKNAE 107
           + ++P  ++CF+ ++  G T  + +QV+RGG       + +P G  +     ++ +   +
Sbjct: 27  LQVEPKSQECFYNFIESGKTSLLLYQVIRGGLLDINVKLTDPKGNTIFERLHFDTQMKGK 86

Query: 108 YQDTPPHGGYYSVCIDNQFSRNAGKLVNMYLTVVRYDQWDKYHKEIEDL--NVSVQNFTD 165
              T    G Y VC +N+ SR   K+V           W    + ++++    S+     
Sbjct: 87  QSFTAGESGAYKVCFNNEMSRFTAKVVTF--------TWASEEEGVKEVAKGDSITPMDQ 138

Query: 166 SVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQILVIAATTTVQVYFVR 225
           SV+ +ER +  ++ +Q   R RE  + +  E  N  V+ W++ +++V+      Q++++R
Sbjct: 139 SVQKIERVLQSVIHEQKKLRYREQANRDTSESTNARVVWWTIAEVIVLVVMGVGQIWYLR 198

Query: 226 QLFNSKTN 233
           + F++K+ 
Sbjct: 199 KWFDNKST 206

Could have a role in the budding of coatomer-coated and other species of coated vesicles.

Dictyostelium discoideum (taxid: 44689)

>sp|Q5BK85|TMED1_RAT Transmembrane emp24 domain-containing protein 1 OS=Rattus norvegicus GN=Tmed1 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 6/194 (3%)

Query: 48  DYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYEWKKNAE 107
           ++   +  G++ CF+Q     A+    +QV+ G      F + +P G ++     K +  
Sbjct: 33  EFTFLLPAGRKQCFYQSAPANASLETEYQVIGGAGLDVDFTLESPQGVLLVSESRKADGV 92

Query: 108 YQDTPPHGGYYSVCIDNQFSRNAGKLVNMYLTVVRY------DQWDKYHKEIEDLNVSVQ 161
           +   P   G Y +C DN FS  + KLV   L    +      + W +  +  E L+V ++
Sbjct: 93  HTVEPTEAGDYRLCFDNSFSTISEKLVFFELIFDSFQDEEEVEGWAEAVEPEEMLDVKME 152

Query: 162 NFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQILVIAATTTVQV 221
           +  +S+ T+   +   +Q     R+ EARD NL EDN   V  WS   + V+     +QV
Sbjct: 153 DIKESIETMRTRLERSIQMLTLLRAFEARDRNLQEDNLERVNFWSAANVAVLLLVAVLQV 212

Query: 222 YFVRQLFNSKTNKP 235
             +++ F+ K   P
Sbjct: 213 CTLKRFFHDKCPVP 226

Potential role in vesicular protein trafficking, mainly in the early secretory pathway. May act as a cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and may be involved in vesicle coat formation at the cytoplasmic side.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
91090696	235	PREDICTED: similar to cop-coated vesicle	0.877	0.885	0.711	8e-89
357604013	234	putative cop-coated vesicle membrane pro	0.957	0.970	0.621	8e-86
350540080	259	uncharacterized protein LOC100168963 pre	0.852	0.779	0.702	2e-85
383847180	227	PREDICTED: transmembrane emp24 domain-co	0.877	0.916	0.682	8e-84
380018648	225	PREDICTED: transmembrane emp24 domain-co	0.911	0.96	0.662	1e-83
156551892	311	PREDICTED: transmembrane emp24 domain-co	0.886	0.675	0.682	1e-83
66519029	227	PREDICTED: transmembrane emp24 domain-co	0.877	0.916	0.668	6e-83
307197492	227	Transmembrane emp24 domain-containing pr	0.835	0.872	0.702	4e-82
350412599	227	PREDICTED: transmembrane emp24 domain-co	0.835	0.872	0.691	6e-81
340720763	227	PREDICTED: transmembrane emp24 domain-co	0.877	0.916	0.649	2e-80

>gi|91090696|ref|XP_974756.1| PREDICTED: similar to cop-coated vesicle membrane protein P24 [Tribolium castaneum] gi|270013945|gb|EFA10393.1| hypothetical protein TcasGA2_TC012624 [Tribolium castaneum]

 Score =  332 bits (851), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 148/208 (71%), Positives = 185/208 (88%)

Query: 30  STSDESAPWYENLPAVAMDYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRGGDGMAGFAV 89
           + +  + PWYENLPAVAMDYK+HIDPGKEDC++QYVNPGATFYV+FQV+RGGDGMAGFAV
Sbjct: 26  TGAQSTVPWYENLPAVAMDYKVHIDPGKEDCYYQYVNPGATFYVSFQVVRGGDGMAGFAV 85

Query: 90  RNPNGQIVHPYEWKKNAEYQDTPPHGGYYSVCIDNQFSRNAGKLVNMYLTVVRYDQWDKY 149
           R+P+GQIVHPY+WK N+EYQD    GGYYSVCIDNQFSR AGKLVN+Y+TVVRYD W+KY
Sbjct: 86  RHPSGQIVHPYQWKPNSEYQDQTSTGGYYSVCIDNQFSRFAGKLVNIYITVVRYDMWEKY 145

Query: 150 HKEIEDLNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQ 209
            KEI++LN++++NFT+++ TV+RNIN+ILQ Q+H+R+REA DFNLL+DNN YV+ WS+IQ
Sbjct: 146 TKEIDELNMNMENFTNTIVTVDRNINDILQYQHHSRAREAWDFNLLQDNNTYVVRWSIIQ 205

Query: 210 ILVIAATTTVQVYFVRQLFNSKTNKPRA 237
           I+VI ATT VQVYFVR+LF+ K+   R+
Sbjct: 206 IIVIMATTAVQVYFVRKLFDIKSGSSRS 233

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357604013|gb|EHJ64009.1| putative cop-coated vesicle membrane protein P24 [Danaus plexippus]

 Score =  322 bits (825), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 146/235 (62%), Positives = 187/235 (79%), Gaps = 8/235 (3%)

Query: 3   RNWCFF-CLSLVFSLKYVLSGSMQAVTASTSDESAPWYENLPAVAMDYKIHIDPGKEDCF 61
           + W  F  L L+F++       +     S+S  +APWYENLPAV MDYK+HID GKEDC+
Sbjct: 4   KTWHLFTVLLLIFTI-------LSHAGESSSTPAAPWYENLPAVTMDYKVHIDAGKEDCY 56

Query: 62  FQYVNPGATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYEWKKNAEYQDTPPHGGYYSVC 121
           FQYV PGATFY ++QVL+GGDGM GFAVR+P G IVHPYEW+++AEY D    GGYY+VC
Sbjct: 57  FQYVQPGATFYASYQVLKGGDGMCGFAVRHPKGNIVHPYEWRQSAEYADQSSTGGYYAVC 116

Query: 122 IDNQFSRNAGKLVNMYLTVVRYDQWDKYHKEIEDLNVSVQNFTDSVRTVERNINEILQQQ 181
           IDNQFSR AGKLVN+YL+V+RYD+W++Y KE+E+L+++++NFT+S++ VERN+N+ILQ Q
Sbjct: 117 IDNQFSRFAGKLVNLYLSVIRYDKWEQYAKEVEELDMNIKNFTNSIQFVERNVNDILQYQ 176

Query: 182 YHARSREARDFNLLEDNNRYVMNWSVIQILVIAATTTVQVYFVRQLFNSKTNKPR 236
           YH+R+RE RD+NLL DNN YV  WSVIQIL IAAT T+QVYFVR+LF  K N  +
Sbjct: 177 YHSRARETRDYNLLVDNNAYVSRWSVIQILAIAATGTLQVYFVRKLFEVKDNSSK 231

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350540080|ref|NP_001232934.1| uncharacterized protein LOC100168963 precursor [Acyrthosiphon pisum] gi|239788044|dbj|BAH70718.1| ACYPI009625 [Acyrthosiphon pisum]

 Score =  320 bits (821), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 142/202 (70%), Positives = 174/202 (86%)

Query: 35  SAPWYENLPAVAMDYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRGGDGMAGFAVRNPNG 94
           +APWYE LPAVAMDYK+ IDPGKEDC+FQ+VNPGATFY + QVLRGGDGMAGFAVR+PNG
Sbjct: 55  TAPWYETLPAVAMDYKVIIDPGKEDCYFQFVNPGATFYASAQVLRGGDGMAGFAVRHPNG 114

Query: 95  QIVHPYEWKKNAEYQDTPPHGGYYSVCIDNQFSRNAGKLVNMYLTVVRYDQWDKYHKEIE 154
           QIVHPY+WK +++YQD    GGYYSVCIDNQFS+ A KLVN+Y+TV+RYD+WD+YHKEIE
Sbjct: 115 QIVHPYQWKASSDYQDQESTGGYYSVCIDNQFSKFAAKLVNLYITVIRYDKWDEYHKEIE 174

Query: 155 DLNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQILVIA 214
           D+NV V+NFT +V++VE NIN +LQ Q+H RS+E RD+NLL DN  YV  WS++QIL+I 
Sbjct: 175 DMNVGVENFTSTVKSVENNINHMLQHQHHVRSQENRDYNLLVDNKTYVNRWSIMQILLIM 234

Query: 215 ATTTVQVYFVRQLFNSKTNKPR 236
            TTT+QVYFVR+LF +KT K +
Sbjct: 235 GTTTLQVYFVRKLFETKTGKSK 256

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847180|ref|XP_003699233.1| PREDICTED: transmembrane emp24 domain-containing protein 5-like [Megachile rotundata]

 Score =  315 bits (808), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 142/208 (68%), Positives = 173/208 (83%)

Query: 27  VTASTSDESAPWYENLPAVAMDYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRGGDGMAG 86
           V+ + +    PWYE+LPAVA+DYK+HID GKEDC+FQYVN GATFYVNFQV+RGGDG AG
Sbjct: 14  VSLANTSMPHPWYESLPAVALDYKVHIDAGKEDCYFQYVNKGATFYVNFQVVRGGDGKAG 73

Query: 87  FAVRNPNGQIVHPYEWKKNAEYQDTPPHGGYYSVCIDNQFSRNAGKLVNMYLTVVRYDQW 146
           FAVRNP G IVHPY+W  N++YQDT  + GYYS+CIDNQFSR A KLVN+Y+TV+RYD+W
Sbjct: 74  FAVRNPEGVIVHPYQWLSNSDYQDTVINAGYYSICIDNQFSRFASKLVNLYITVIRYDEW 133

Query: 147 DKYHKEIEDLNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWS 206
           DKY +E+E+LN+SV+NFT ++  VERNINEILQ Q+ +RSREARD NLL DNN YV  WS
Sbjct: 134 DKYSRELEELNLSVENFTSAITNVERNINEILQTQHLSRSREARDLNLLLDNNSYVQTWS 193

Query: 207 VIQILVIAATTTVQVYFVRQLFNSKTNK 234
           + QI+VI  TTT+QVYFVR+LF  K +K
Sbjct: 194 IAQIVVILVTTTIQVYFVRKLFEVKPSK 221

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018648|ref|XP_003693238.1| PREDICTED: transmembrane emp24 domain-containing protein 5-like [Apis florea]

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 143/216 (66%), Positives = 177/216 (81%)

Query: 19  VLSGSMQAVTASTSDESAPWYENLPAVAMDYKIHIDPGKEDCFFQYVNPGATFYVNFQVL 78
           V SG    ++ + +  S PWYE LPAVA+DYK+HID GKEDC+FQYVN GATFYVNFQV+
Sbjct: 4   VKSGFRNILSLANTSVSHPWYETLPAVALDYKVHIDAGKEDCYFQYVNAGATFYVNFQVV 63

Query: 79  RGGDGMAGFAVRNPNGQIVHPYEWKKNAEYQDTPPHGGYYSVCIDNQFSRNAGKLVNMYL 138
           RGGDG AGFAVRNP+G IVHPY+W  N++YQDT  + GYYS+CIDNQFSR A KLVN+Y+
Sbjct: 64  RGGDGKAGFAVRNPDGIIVHPYQWLPNSDYQDTVKNAGYYSICIDNQFSRFASKLVNLYI 123

Query: 139 TVVRYDQWDKYHKEIEDLNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDN 198
           TV+RYD+WDKY +E+E+LN+SV+NFT ++  VERNINE+LQ Q+ +RS+EARD NLL DN
Sbjct: 124 TVIRYDEWDKYTRELEELNLSVENFTSAITNVERNINEMLQTQHLSRSKEARDLNLLLDN 183

Query: 199 NRYVMNWSVIQILVIAATTTVQVYFVRQLFNSKTNK 234
           N YV  WS+ QI+VI  TTTVQVYFVR+LF  K ++
Sbjct: 184 NSYVQTWSIAQIIVILVTTTVQVYFVRKLFEVKPSR 219

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156551892|ref|XP_001605975.1| PREDICTED: transmembrane emp24 domain-containing protein 6-like [Nasonia vitripennis]

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 144/211 (68%), Positives = 179/211 (84%), Gaps = 1/211 (0%)

Query: 24  MQAVTASTSDES-APWYENLPAVAMDYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRGGD 82
           +Q V A  +  S  PWYE LPAVAMDYK+HIDPGKEDC+FQYVNPGATFYV+FQVLRGGD
Sbjct: 94  VQHVPAHAAPVSNQPWYETLPAVAMDYKVHIDPGKEDCYFQYVNPGATFYVSFQVLRGGD 153

Query: 83  GMAGFAVRNPNGQIVHPYEWKKNAEYQDTPPHGGYYSVCIDNQFSRNAGKLVNMYLTVVR 142
           G AGFAVRNP+G+IVHPY+W+ NA+YQD   +GGYYSVC+DNQFSR AGKLVN+YLTV+R
Sbjct: 154 GKAGFAVRNPSGEIVHPYQWRANADYQDQSQYGGYYSVCVDNQFSRFAGKLVNLYLTVIR 213

Query: 143 YDQWDKYHKEIEDLNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYV 202
           YDQW+K+ KE+ED+N+SV+N T ++  VE+NI E+LQ Q+ +RSRE RD+NLL +NN YV
Sbjct: 214 YDQWEKFAKELEDMNLSVENVTGTLVGVEKNIYEVLQMQHFSRSREDRDYNLLLNNNSYV 273

Query: 203 MNWSVIQILVIAATTTVQVYFVRQLFNSKTN 233
            NWS++Q++VI ATT +QVYFVR+LF  K+ 
Sbjct: 274 QNWSILQVVVIMATTILQVYFVRRLFEVKSG 304

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66519029|ref|XP_393466.2| PREDICTED: transmembrane emp24 domain-containing protein 5 [Apis mellifera]

 Score =  313 bits (801), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 139/208 (66%), Positives = 174/208 (83%)

Query: 27  VTASTSDESAPWYENLPAVAMDYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRGGDGMAG 86
           ++ + +  S PWYE LPAVA+DYK+HID GKEDC+FQYVN GATFYVNFQV+RGGDG AG
Sbjct: 14  LSLANTSVSHPWYETLPAVALDYKVHIDAGKEDCYFQYVNAGATFYVNFQVVRGGDGKAG 73

Query: 87  FAVRNPNGQIVHPYEWKKNAEYQDTPPHGGYYSVCIDNQFSRNAGKLVNMYLTVVRYDQW 146
           FAVRNP+G IVHPY+W  N++YQDT  + GYYS+CIDNQFSR A KL+N+Y+TV+RYD+W
Sbjct: 74  FAVRNPDGIIVHPYQWVPNSDYQDTVKNAGYYSICIDNQFSRFASKLINLYITVIRYDEW 133

Query: 147 DKYHKEIEDLNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWS 206
           DKY +E+E+LN+SV+NFT ++  VERNINE+LQ Q+ +RS+EARD NLL DNN YV  WS
Sbjct: 134 DKYTRELEELNLSVENFTSAITNVERNINEMLQTQHLSRSKEARDLNLLLDNNSYVQTWS 193

Query: 207 VIQILVIAATTTVQVYFVRQLFNSKTNK 234
           + QI+VI  TTTVQVYFVR+LF  K ++
Sbjct: 194 IAQIIVILVTTTVQVYFVRKLFEVKPSR 221

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307197492|gb|EFN78726.1| Transmembrane emp24 domain-containing protein 1 [Harpegnathos saltator]

 Score =  310 bits (793), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 139/198 (70%), Positives = 169/198 (85%)

Query: 39  YENLPAVAMDYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRGGDGMAGFAVRNPNGQIVH 98
           YE+LPAVAMDYK+HID GKEDC+FQYVNPGATFYV+FQVLRGGDG AGFAVRNP G +V+
Sbjct: 27  YEDLPAVAMDYKVHIDAGKEDCYFQYVNPGATFYVSFQVLRGGDGKAGFAVRNPGGVLVY 86

Query: 99  PYEWKKNAEYQDTPPHGGYYSVCIDNQFSRNAGKLVNMYLTVVRYDQWDKYHKEIEDLNV 158
           PY+W+ NA+YQDT  +GGYYSVCIDNQFSR A KLVN+Y+TV+RYDQW KY KE+E+LN+
Sbjct: 87  PYQWRSNADYQDTSINGGYYSVCIDNQFSRFAAKLVNLYITVIRYDQWQKYSKELEELNL 146

Query: 159 SVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQILVIAATTT 218
           SV+NFT+++  VERNINE+LQ Q+ +RSREARD NLL DNN YV  WS+ Q+LVI ATT 
Sbjct: 147 SVENFTNTIVNVERNINEMLQTQHLSRSREARDLNLLLDNNSYVQTWSIAQVLVITATTL 206

Query: 219 VQVYFVRQLFNSKTNKPR 236
           +Q +FVR+LF+ K    +
Sbjct: 207 IQAFFVRKLFDVKPGHSK 224

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350412599|ref|XP_003489701.1| PREDICTED: transmembrane emp24 domain-containing protein 5-like [Bombus impatiens]

 Score =  306 bits (783), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 137/198 (69%), Positives = 166/198 (83%)

Query: 37  PWYENLPAVAMDYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRGGDGMAGFAVRNPNGQI 96
           PWYE LPAVA+DYK+HID GKEDC+FQYVN GATFYVNFQV+RGGD  AGFAVRNP G I
Sbjct: 24  PWYETLPAVALDYKVHIDAGKEDCYFQYVNAGATFYVNFQVVRGGDRKAGFAVRNPEGVI 83

Query: 97  VHPYEWKKNAEYQDTPPHGGYYSVCIDNQFSRNAGKLVNMYLTVVRYDQWDKYHKEIEDL 156
           VHPY+W  N++YQDT  + GYYS+CIDNQFSR A KLVN+Y+TV+RYD+WDKY  E+E+L
Sbjct: 84  VHPYQWLPNSDYQDTVKNAGYYSICIDNQFSRFASKLVNLYITVIRYDEWDKYSMELEEL 143

Query: 157 NVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQILVIAAT 216
           N+SV+NFT ++  VE+NINE+LQ Q+ +RSREARD NLL DNN YV  WS+ QI+VI  T
Sbjct: 144 NLSVENFTSAIINVEKNINEMLQTQHLSRSREARDLNLLLDNNSYVQTWSIAQIIVIMVT 203

Query: 217 TTVQVYFVRQLFNSKTNK 234
           TT+QVYFVR+LF  K ++
Sbjct: 204 TTIQVYFVRKLFEVKPSR 221

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720763|ref|XP_003398800.1| PREDICTED: transmembrane emp24 domain-containing protein 5-like [Bombus terrestris]

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 135/208 (64%), Positives = 172/208 (82%)

Query: 27  VTASTSDESAPWYENLPAVAMDYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRGGDGMAG 86
           ++ + ++   PWYE LPAVA+DYK+HID GKEDC+FQYVN GATFYVNFQV+RGGD  AG
Sbjct: 14  LSLANANMPHPWYETLPAVALDYKVHIDAGKEDCYFQYVNAGATFYVNFQVVRGGDRKAG 73

Query: 87  FAVRNPNGQIVHPYEWKKNAEYQDTPPHGGYYSVCIDNQFSRNAGKLVNMYLTVVRYDQW 146
           FAVRNP G IVHPY+W  N++YQDT  + GYYS+CIDNQFSR A KLVN+Y+TV+RYD+W
Sbjct: 74  FAVRNPEGVIVHPYQWLPNSDYQDTVKNAGYYSICIDNQFSRFASKLVNLYITVIRYDEW 133

Query: 147 DKYHKEIEDLNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWS 206
           D+Y  E+++LN+SV+NFT ++  VE+NINE+LQ Q+ +RSREARD NLL DNN YV  WS
Sbjct: 134 DRYSMELQELNLSVENFTSAISNVEKNINEMLQTQHLSRSREARDLNLLLDNNSYVQIWS 193

Query: 207 VIQILVIAATTTVQVYFVRQLFNSKTNK 234
           ++QI+VI  TTT+QVYFVR+LF  K ++
Sbjct: 194 IVQIIVIMVTTTIQVYFVRKLFEVKPSR 221

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
FB|FBgn0061492	237	loj "logjam" [Drosophila melan	0.940	0.940	0.602	5.3e-72
UNIPROTKB|F1S389	240	LOC100517589 "Uncharacterized	0.902	0.891	0.311	2.1e-20
UNIPROTKB|Q0VCA9	240	TMED6 "Transmembrane emp24 dom	0.776	0.766	0.341	3.5e-20
ZFIN|ZDB-GENE-040426-1302	225	tmed5 "transmembrane emp24 pro	0.776	0.817	0.298	5.7e-20
UNIPROTKB|Q8WW62	240	TMED6 "Transmembrane emp24 dom	0.911	0.9	0.288	3.1e-19
MGI|MGI:1921586	229	Tmed5 "transmembrane emp24 pro	0.793	0.820	0.270	6.5e-19
RGD|1359437	229	Tmed5 "transmembrane emp24 pro	0.793	0.820	0.270	6.5e-19
UNIPROTKB|E2RR38	229	TMED5 "Uncharacterized protein	0.793	0.820	0.260	2.8e-18
ZFIN|ZDB-GENE-070112-1112	226	tmed1b "transmembrane emp24 pr	0.767	0.805	0.274	7.5e-18
ZFIN|ZDB-GENE-040801-229	226	tmed1a "transmembrane emp24 pr	0.763	0.800	0.293	1.2e-17

FB|FBgn0061492 loj "logjam" [Drosophila melanogaster (taxid:7227)]

 Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
 Identities = 135/224 (60%), Positives = 172/224 (76%)

Query:    10 LSLVFSLKYVLSGSMQAVTASTSDESAPWYENLPAVAMDYKIHIDPGKEDCFFQYVNPGA 69
             ++LV  +  +    +  VT S  +   PWYENLPAVAMDYK+HID GKEDC+ QYV  GA
Sbjct:    10 INLVLPIALICCCLLIDVT-SAQEAQQPWYENLPAVAMDYKVHIDAGKEDCYHQYVKAGA 68

Query:    70 TFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYEWKKNAEYQDTPPHGGYYSVCIDNQFSRN 129
             TFYV+F V+RGGDGMAGFAVRNP G++V PY+W+  A+Y D    GGYYSVCIDNQFSR 
Sbjct:    69 TFYVSFSVVRGGDGMAGFAVRNPAGEVVKPYQWQATADYTDQVSPGGYYSVCIDNQFSRF 128

Query:   130 AGKLVNMYLTVVRYDQWDKYHKEIEDLNVSVQNFTDSVRTVERNINEILQQQYHARSREA 189
             AGKLVN+Y+TVV+YD WDKY KEIE L +++QNFT +V TVERNIN+++  Q H+R RE+
Sbjct:   129 AGKLVNIYITVVKYDAWDKYAKEIEQLQLNMQNFTATVGTVERNINDMMGYQAHSRHRES 188

Query:   190 RDFNLLEDNNRYVMNWSVIQILVIAATTTVQVYFVRQLFNSKTN 233
             RD+ LL DNN Y+  +S+ QI+VI  T +VQV+FVR+LF  K++
Sbjct:   189 RDYALLLDNNAYIQTFSISQIVVILITCSVQVFFVRKLFEVKSS 232

GO:0018991 "oviposition" evidence=IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IDA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IDA

GO:0000003 "reproduction" evidence=IMP

GO:0048042 "regulation of post-mating oviposition" evidence=IMP

UNIPROTKB|F1S389 LOC100517589 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 73/234 (31%), Positives = 109/234 (46%)

Query:    16 LKYVLSGSMQAVTASTSDESAPWYENLPAVAMDYKIHIDPGKEDCFFQYVNPGATFYVNF 75
             L  V S   Q     +     P +    A   D+ I I PG  +CF+Q+ +    FY ++
Sbjct:    13 LNLVTSARSQKTGPLSGSSDQPLFRG--ADQHDFAIMIPPGGTECFWQFAHQTGYFYFSY 70

Query:    76 QVLR----GGDGMAGFAVRNPNGQIVHPYEWKKNAEYQD--TPPHGGYYSVCIDNQFSRN 129
             +V R      D         P G ++   +  KN   Q   +    G+Y +C+ NQ +R 
Sbjct:    71 EVQRTVGMSHDRHVAATAHTPQGFLI---DTSKNVRGQINFSTQETGFYQLCLKNQQNRF 127

Query:   130 AGKLVNMYLTV-VRYDQWDKYHKEIE--DLNVSVQNFTDSVRTVERNINEILQQQYHARS 186
                 V +YL   V Y+  +  HKE E   LN ++    +S R V+RNI  + +    AR 
Sbjct:   128 GS--VQVYLNFGVFYEGPETDHKESERKQLNDTLDAIEESTRKVQRNIFHMWRYYNFARM 185

Query:   187 REARDFNLLEDNNRYVMNWSVIQILVIAATTTVQVYFVRQLFN----SKTNKPR 236
             R+  DF LL+ N  YV  WS  Q LVI  +  +Q+YF+++LFN    + T KPR
Sbjct:   186 RKTADFFLLQSNYNYVNWWSTAQSLVIVLSGILQLYFLKRLFNIPTTTDTKKPR 239

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|Q0VCA9 TMED6 "Transmembrane emp24 domain-containing protein 6" [Bos taurus (taxid:9913)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 69/202 (34%), Positives = 102/202 (50%)

Query:    48 DYKIHIDPGKEDCFFQYVNPGATFYVNFQVLR----GGDGMAGFAVRNPNGQIVHPYEWK 103
             D+ I I PG  +CF+Q+ +    FY +++V R      D         P G ++   E  
Sbjct:    43 DFAIVIPPGGTECFWQFAHQTGYFYFSYEVQRTIGMSHDRHVAATAHTPQGFLI---ETS 99

Query:   104 KNAEYQ-DTPPHG-GYYSVCIDNQFSRNAGKLVNMYLTV-VRYDQWDKYHKEIE--DLNV 158
             KN   Q +   H  G+Y +C+ NQ +R A   V +YL   V Y+  +  HKE E   LN 
Sbjct:   100 KNVRGQINFSTHETGFYQLCLANQQNRFAS--VQVYLNFGVFYEGPEMDHKENERKQLND 157

Query:   159 SVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQILVIAATTT 218
             ++    +S R V  NI  + +    AR R+  DF LL+ N  YV  WS  Q LVI  +  
Sbjct:   158 TLDAIEESTRKVHYNIFHMWRHYNFARMRKTADFFLLQSNYNYVNWWSTAQSLVIVLSGI 217

Query:   219 VQVYFVRQLFNS----KTNKPR 236
             +Q+YF+++LFN+    +T KPR
Sbjct:   218 LQLYFLKRLFNTPMTTETQKPR 239

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

ZFIN|ZDB-GENE-040426-1302 tmed5 "transmembrane emp24 protein transport domain containing 5" [Danio rerio (taxid:7955)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 57/191 (29%), Positives = 96/191 (50%)

Query:    48 DYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYEWKKNAE 107
             D+   +  G+ +CFFQ +   A+  + +QVL G      F + +P+G I+   +++K+  
Sbjct:    32 DFTFTLAAGRRECFFQTMKKDASLEIEYQVLDGASLDVDFQLNSPSGHIIAS-DYRKSDG 90

Query:   108 YQDTPPHGGYYSVCIDNQFSRNAGKLV--NMYLTVVRYDQ----WDKYHKEIEDLNVSVQ 161
                     G Y  C DN FS  + K++   + L  +  D+    W  Y +  + L++ ++
Sbjct:    91 VHTVETEEGDYMFCFDNTFSAVSEKVIFFELILDNMGEDEESEDWKAYVQGADLLDMKLE 150

Query:   162 NFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQILVIAATTTVQV 221
             +  D++  V+  + + LQ Q   R+ EARD NL E N   V  WS   +LV+   + VQV
Sbjct:   151 DIMDTINNVKSRLGKSLQIQTLLRAFEARDRNLQESNYERVNLWSCTNVLVMVIVSGVQV 210

Query:   222 YFVRQLFNSKT 232
             Y +R LF  KT
Sbjct:   211 YLLRSLFEDKT 221

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q8WW62 TMED6 "Transmembrane emp24 domain-containing protein 6" [Homo sapiens (taxid:9606)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 67/232 (28%), Positives = 108/232 (46%)

Query:    16 LKYVLSGSMQAVTASTSDESAPWYENLPAVAMDYKIHIDPGKEDCFFQYVNPGATFYVNF 75
             L  V S   Q     +     P +    A   D+ I I PG  +CF+Q+ +    FY ++
Sbjct:    13 LNLVTSARSQKTEPLSGSGDQPLFRG--ADRYDFAIMIPPGGTECFWQFAHQTGYFYFSY 70

Query:    76 QVLR----GGDGMAGFAVRNPNGQIVHPYEWKKNAEYQDTPPHGGYYSVCIDNQFSRNAG 131
             +V R      D        NP G ++   +  +  +   +    G+Y +C+ NQ + + G
Sbjct:    71 EVQRTVGMSHDRHVAATAHNPQGFLIDTSQGVRG-QINFSTQETGFYQLCLSNQHN-HFG 128

Query:   132 KLVNMYLTV-VRYD--QWDKYHKEIEDLNVSVQNFTDSVRTVERNINEILQQQYHARSRE 188
               V +YL   V Y+  + D   KE + LN ++    D  + V+ NI  + +    AR R+
Sbjct:   129 S-VQVYLNFGVFYEGPETDHKQKERKQLNDTLDAIEDGTQKVQNNIFHMWRYYNFARMRK 187

Query:   189 ARDFNLLEDNNRYVMNWSVIQILVIAATTTVQVYFVRQLFN----SKTNKPR 236
               DF L++ N  YV  WS  Q LVI  +  +Q+YF+++LFN    + T KPR
Sbjct:   188 MADFFLIQSNYNYVNWWSTAQSLVIILSGILQLYFLKRLFNVPTTTDTKKPR 239

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

MGI|MGI:1921586 Tmed5 "transmembrane emp24 protein transport domain containing 5" [Mus musculus (taxid:10090)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 53/196 (27%), Positives = 100/196 (51%)

Query:    43 PAVAMDYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYEW 102
             P++  D+   +  G+++CF+Q +   A+  + +QVL GG+    F + +P G+ +  +E 
Sbjct:    30 PSLDSDFTFTLPAGRKECFYQPMPLKASLEIEYQVLDGGELDIDFHLTSPEGRTL-VFEQ 88

Query:   103 KKNAEYQDTPPHGGYYSVCIDNQFSRNAGKLV-------NMYLTVVRYDQWDKYHKEIED 155
             +K+          G Y  C DN FS  + K++       NM   V   + W KY    + 
Sbjct:    89 RKSDGVHTIETEDGDYMFCFDNTFSTISEKVIFFELILDNMGEEVQGQEDWKKYITNTDV 148

Query:   156 LNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQILVIAA 215
             L + +++  +S+ +++  +++    Q   R+ EARD N+ E N   V  WSV+ ++V+  
Sbjct:   149 LEMKLEDILESINSIKSRLSKSGHIQTLLRAFEARDRNIQESNFDRVNFWSVVNLMVMVV 208

Query:   216 TTTVQVYFVRQLFNSK 231
              + +QVY ++ LF  K
Sbjct:   209 VSAIQVYTLKSLFEDK 224

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0070971 "endoplasmic reticulum exit site" evidence=ISO

GO:0090161 "Golgi ribbon formation" evidence=ISO

RGD|1359437 Tmed5 "transmembrane emp24 protein transport domain containing 5" [Rattus norvegicus (taxid:10116)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 53/196 (27%), Positives = 100/196 (51%)

Query:    43 PAVAMDYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYEW 102
             P++  D+   +  G+++CF+Q +   A+  + +QVL GG+    F + +P G+ +  +E 
Sbjct:    30 PSLDSDFTFTLPAGQKECFYQPMPLKASLEIEYQVLDGGELDIDFHLASPEGRTL-VFEQ 88

Query:   103 KKNAEYQDTPPHGGYYSVCIDNQFSRNAGKLV-------NMYLTVVRYDQWDKYHKEIED 155
             +K+          G Y  C DN FS  + K++       NM   V   + W KY    + 
Sbjct:    89 RKSDGVHTVETEDGDYMFCFDNTFSTISEKVIFFELILDNMGEEVEGQEDWKKYITNTDV 148

Query:   156 LNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQILVIAA 215
             L + +++  +S+ +++  +++    Q   R+ EARD N+ E N   V  WSV+ ++V+  
Sbjct:   149 LEMKLEDILESINSIKSRLSKSGHIQTLLRAFEARDRNIQESNFDRVNFWSVVNLMVMVV 208

Query:   216 TTTVQVYFVRQLFNSK 231
              + +QVY ++ LF  K
Sbjct:   209 VSAIQVYTLKSLFEDK 224

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=ISO;ISS

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=ISO;ISS

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0070971 "endoplasmic reticulum exit site" evidence=ISO;ISS

GO:0090161 "Golgi ribbon formation" evidence=ISO;ISS

UNIPROTKB|E2RR38 TMED5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 51/196 (26%), Positives = 99/196 (50%)

Query:    43 PAVAMDYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYEW 102
             P++  D+   +  G+++CF+Q + P A+  + +QVL G      F + +P G+ +  +E 
Sbjct:    30 PSLDSDFTFTLPAGQKECFYQPMPPKASLEIEYQVLDGAGLDIDFHLASPEGRTL-VFEQ 88

Query:   103 KKNAEYQDTPPHGGYYSVCIDNQFSRNAGKLV-------NMYLTVVRYDQWDKYHKEIED 155
             +K+          G Y  C DN FS  + K++       NM       + W KY    + 
Sbjct:    89 RKSDGVHTVETEDGDYMFCFDNTFSTISEKVIFFELILDNMGEQEQEQEDWKKYITGTDM 148

Query:   156 LNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQILVIAA 215
             L++ +++  +S+ +++  +++    Q   R+ EARD N+ E N   V  WS++ ++V+  
Sbjct:   149 LDMKLEDILESINSIKARLSKSGHIQTLLRAFEARDRNIQESNFDRVNFWSMVNLVVMVV 208

Query:   216 TTTVQVYFVRQLFNSK 231
              + +QVY ++ LF  K
Sbjct:   209 VSAIQVYMLKSLFEDK 224

GO:0090161 "Golgi ribbon formation" evidence=IEA

GO:0070971 "endoplasmic reticulum exit site" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

ZFIN|ZDB-GENE-070112-1112 tmed1b "transmembrane emp24 protein transport domain containing 1b" [Danio rerio (taxid:7955)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 53/193 (27%), Positives = 94/193 (48%)

Query:    48 DYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRGGDGMAGFAVRNPNG-QIVHPYEWKKNA 106
             ++   +    ++CF+Q      +  + +QV+ G      F+V +P G  ++  +  + + 
Sbjct:    31 EFTFLLPAASKECFYQSAVHNGSVEIEYQVIAGAGMDVDFSVVSPQGIHLISEFR-RSDG 89

Query:   107 EYQDTPPHGGYYSVCIDNQFSRNAGKLVNMYLTVVRY--------DQWDKYHKEIEDLNV 158
              +   P   G Y +C DN FSR + K+V  +  ++ +        D+W    +    L  
Sbjct:    90 VHMVEPTEEGDYQICFDNTFSRFSEKMV-FFEVILDHPSNDAGADDEWAGLGEPESILEY 148

Query:   159 SVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQILVIAATTT 218
              + +  +S+ TV R +    Q Q   R+ EARD NLLEDN   V  WS + +LV+ +   
Sbjct:   149 KLDDIKESMETVHRRLERSRQMQTFLRAFEARDRNLLEDNLWRVSFWSCVNLLVLLSVAF 208

Query:   219 VQVYFVRQLFNSK 231
             +QVY +R+LF+ K
Sbjct:   209 IQVYTLRRLFDDK 221

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-040801-229 tmed1a "transmembrane emp24 protein transport domain containing 1a" [Danio rerio (taxid:7955)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 57/194 (29%), Positives = 92/194 (47%)

Query:    48 DYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRGGDGMAGFAVRNPNG-QIVHPYEWKKNA 106
             ++   +  G  +CFFQ     ++  V +QV+ G     GF + +P G ++V  +      
Sbjct:    31 EFTFLLPAGATECFFQTATKNSSMEVEYQVIAGSGLDVGFTLISPRGYRLVSDFRKSDGI 90

Query:   107 EYQDTPPHGGYYSVCIDNQFSRNAGKLVNMYLTVVRY---------DQWDKYHKEIEDLN 157
                D+   G Y  +C DN FSR + K+V  Y+ V+           + W    +  + L 
Sbjct:    91 HTVDSTEEGDY-RICFDNSFSRISEKMV--YVEVIMDGPEGEDEDDEDWAALAEPEDSLE 147

Query:   158 VSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQILVIAATT 217
               +++  DS+  V +++    Q Q   R+ EARD  LLEDN   V  WS   +LV+ +  
Sbjct:   148 YKLEDIRDSMDAVHKSLERSRQLQTTLRAFEARDRYLLEDNLWRVSFWSCASLLVMISVA 207

Query:   218 TVQVYFVRQLFNSK 231
               QVY +R+LFN K
Sbjct:   208 LTQVYTLRRLFNDK 221

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8WW62	TMED6_HUMAN	No assigned EC number	0.2966	0.9029	0.8916	yes	N/A
Q12450	ERP4_YEAST	No assigned EC number	0.2237	0.8438	0.9661	yes	N/A
Q0VCA9	TMED6_BOVIN	No assigned EC number	0.3366	0.7763	0.7666	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	237
pfam01105	178	pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOL	2e-44

>gnl|CDD|216301 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD

 Score =  146 bits (371), Expect = 2e-44
 Identities = 48/185 (25%), Positives = 89/185 (48%), Gaps = 10/185 (5%)

Query: 48  DYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRGGDGMAGFAVRNPNGQ---IVHPYEWKK 104
                +  G+++CF++ V  G     ++QV+ GG+    F + +P+G    I    + K 
Sbjct: 1   ALTFELPAGEKECFYEEVPKGTLVTGSYQVISGGNLDIDFTITDPDGNGNVIYSKEDRKS 60

Query: 105 NAEYQDTPPHGGYYSVCIDNQFSRNAGKLVNMYLTVVRYDQWDKYHKEIEDLNVSVQNFT 164
             ++  T    G Y  C  N FS  + K V+  + V    +     ++++ L   ++   
Sbjct: 61  GGKFSFTATESGEYKFCFSNSFSTFSSKTVSFDIKVGEEAKDIAKKEKLDPLEEELKK-- 118

Query: 165 DSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQILVIAATTTVQVYFV 224
                +E  +N+I ++Q + R REAR     E  N  V+ WS+IQILV+   + +QVY++
Sbjct: 119 -----LEDQLNDIKREQKYLREREARHRETNESTNSRVVWWSIIQILVLIGVSVLQVYYL 173

Query: 225 RQLFN 229
           ++ F 
Sbjct: 174 KRFFE 178

Members of this family are implicated in bringing cargo forward from the ER and binding to coat proteins by their cytoplasmic domains. This domain corresponds closely to the beta-strand rich GOLD domain described in. The GOLD domain is always found combined with lipid- or membrane-association domains. Length = 178

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	237
KOG1692|consensus	201		100.0
KOG3287|consensus	236		100.0
KOG1693|consensus	209		100.0
KOG1690|consensus	215		100.0
KOG1691|consensus	210		100.0
PF01105	183	EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro	100.0
PF13897	136	GOLD_2: Golgi-dynamics membrane-trafficking	93.88
PF01835	99	A2M_N: MG2 domain; InterPro: IPR002890 The protein	93.69
smart00557	93	IG_FLMN Filamin-type immunoglobulin domains. These	93.46
PF04151	70	PPC: Bacterial pre-peptidase C-terminal domain; In	90.72
PF00630	101	Filamin: Filamin/ABP280 repeat; InterPro: IPR01786	84.47
PF13860	81	FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.	83.8
PF09315	179	DUF1973: Domain of unknown function (DUF1973); Int	83.26
PF11589	106	DUF3244: Domain of unknown function (DUF3244); Int	81.89

>KOG1692|consensus

Probab=100.00  E-value=1.6e-47  Score=304.99  Aligned_cols=187  Identities=27%  Similarity=0.490  Sum_probs=175.8

Q ss_pred             ccccceeEEEEEcCCCcceEEEEcCCCCEEEEEEEEEeCCCcceEEEEeCCCCCEEecceeeccceEEEeCCCeeeEEEE
Q psy5395          42 LPAVAMDYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYEWKKNAEYQDTPPHGGYYSVC  121 (237)
Q Consensus        42 L~~~~~~l~f~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~~~~I~v~I~dP~g~~v~~~~~~~~g~f~f~~~~~G~Y~~C  121 (237)
                      |+..+.++.+.+++.+++||+|++..|++++++|+|.+||..+|++.|++|+|+.+++...+++|+|+|+++.+|.|++|
T Consensus        14 L~~~~~~~~is~~ah~eeCf~e~~~~gd~~~vsF~v~~gg~~~vd~~I~gP~~~~i~~~~~~ssgk~tF~a~~~G~Y~fC   93 (201)
T KOG1692|consen   14 LFISAAGYGISLDAHEEECFFENLEEGDKLSVSFEVIDGGFLGVDVEITGPDGKIIHKGKRESSGKYTFTAPKKGTYTFC   93 (201)
T ss_pred             HHHHhhheeEEEccchhhhHhhhhccCCEEEEEEEEecCCccceeEEEECCCCchhhhcccccCceEEEEecCCceEEEE
Confidence            45558899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCCCCeEEEEEEEEEeecCcchhhhhhhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhH
Q psy5395         122 IDNQFSRNAGKLVNMYLTVVRYDQWDKYHKEIEDLNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRY  201 (237)
Q Consensus       122 f~N~~s~~~~k~V~f~i~v~~~~~~~~~~k~~~~l~~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~r  201 (237)
                      |+|..+...||+|.|+|++++.++.++.+++     ++.+++++.|.+|.+.+..++.||.|+..|+++||.++|+||+|
T Consensus        94 F~N~~s~mtpk~V~F~ihvg~~~~~~d~~~d-----~~~~~L~~~I~eL~~al~~Vk~EQeY~~~Rer~Hr~~nEntn~R  168 (201)
T KOG1692|consen   94 FSNKMSTMTPKTVMFTIHVGHAPQRDDLAKD-----AHQNKLEEMIRELSEALTSVKHEQEYMEARERIHRNTNENTNSR  168 (201)
T ss_pred             ecCCCCCCCceEEEEEEEEeeccccchhccc-----ccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcccce
Confidence            9999997779999999999988766654442     56779999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhcccCCC
Q psy5395         202 VMNWSVIQILVIAATTTVQVYFVRQLFNSKTN  233 (237)
Q Consensus       202 v~~~sii~ivvli~~s~~Qv~~LkrfF~~K~~  233 (237)
                      |+|||++|.++||+++++|||||||||+.|+.
T Consensus       169 Vv~wsife~~vLi~~s~~QVyYLkRfFEvkrv  200 (201)
T KOG1692|consen  169 VVLWSIFEALVLIAMSVLQVYYLKRFFEVKRV  200 (201)
T ss_pred             eehHHHHHHHHHHHHHHHHHHHHHHhheeeec
Confidence            99999999999999999999999999999974

>KOG3287|consensus

Probab=100.00  E-value=2e-41  Score=274.40  Aligned_cols=192  Identities=37%  Similarity=0.597  Sum_probs=178.7

Q ss_pred             cccceeEEEEEcCCCcceEEEEcCCCCEEEEEEEEEeC-CCcceEEEEeCCCCCEEecceeeccceEEEeCCCeeeEEEE
Q psy5395          43 PAVAMDYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRG-GDGMAGFAVRNPNGQIVHPYEWKKNAEYQDTPPHGGYYSVC  121 (237)
Q Consensus        43 ~~~~~~l~f~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~-~~~~I~v~I~dP~g~~v~~~~~~~~g~f~f~~~~~G~Y~~C  121 (237)
                      |+....++++||||+++|||..++.+.++.+.|+|.+| |+.+|++++.+|.|+++.....+.+|.+++...+.|.|++|
T Consensus        30 pa~d~dftv~ipAGk~eCf~Q~v~~~~tle~eyQVi~G~GDl~i~Ftl~~P~G~~lv~~q~k~dg~ht~e~~e~GdY~~C  109 (236)
T KOG3287|consen   30 PADDYDFTVMIPAGKTECFYQPVPQGATLEVEYQVIDGAGDLDIDFTLLNPAGEVLVSDQRKVDGVHTVEVTETGDYQVC  109 (236)
T ss_pred             cccccceEEEecCCCceeeeeeccCCeEEEEEEEEEecCCccceeeEEeCCCccEEeecccccCceeEeeccCCcceEEE
Confidence            78899999999999999999999999999999999998 78899999999999999999999999999999999999999


Q ss_pred             EEcCCCCCCCeEEEEEEEEE-------eecCcchhhhhhhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy5395         122 IDNQFSRNAGKLVNMYLTVV-------RYDQWDKYHKEIEDLNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNL  194 (237)
Q Consensus       122 f~N~~s~~~~k~V~f~i~v~-------~~~~~~~~~k~~~~l~~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~  194 (237)
                      |+|++|+++.|.|.|++-+.       ....|++..+..+.++.+++++++.+.++..+++.+...|..+|.||.|+|.+
T Consensus       110 fDNsFS~fs~K~Vffeli~~~~g~~~e~~e~w~k~~e~~~~Ld~kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr~L  189 (236)
T KOG3287|consen  110 FDNSFSTFSRKLVFFELILDAHGEFYEGDETWHKYKERTEQLDVKLDDIEDSIGTIKNNLNKMWQYQALLRAREARDRNL  189 (236)
T ss_pred             EcCccccccceEEEEEEEeccccchhccchhHhhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            99999999999999999443       22346655555667889999999999999999999999999999999999999


Q ss_pred             HHhHHhHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCC
Q psy5395         195 LEDNNRYVMNWSVIQILVIAATTTVQVYFVRQLFNSKTNK  234 (237)
Q Consensus       195 ~est~~rv~~~sii~ivvli~~s~~Qv~~LkrfF~~K~~~  234 (237)
                      .+++..||.|||++|+.+||+++..||++|||+|+.|+..
T Consensus       190 ~esNf~rVN~WS~vq~~vmi~v~~iQVf~lrslFe~~~~~  229 (236)
T KOG3287|consen  190 QESNFDRVNFWSMVQTLVMILVGIIQVFMLRSLFEVKSKS  229 (236)
T ss_pred             HhcccchhhHHHHHHHHHHHHHhhhhhhhhHHHhcCCCCc
Confidence            9999999999999999999999999999999999999743

>KOG1693|consensus

Probab=100.00  E-value=3.4e-40  Score=264.45  Aligned_cols=187  Identities=21%  Similarity=0.398  Sum_probs=169.8

Q ss_pred             ceeEEEEEcCCCcceEEEEcCCCCE-EEEEEEEEeCCCcceEEEEeCCCCCEEecceeeccceEEEeCCCeeeEEEEEEc
Q psy5395          46 AMDYKIHIDPGKEDCFFQYVNPGAT-FYVNFQVLRGGDGMAGFAVRNPNGQIVHPYEWKKNAEYQDTPPHGGYYSVCIDN  124 (237)
Q Consensus        46 ~~~l~f~l~~g~~~Cf~e~v~~~~~-i~~~y~v~~~~~~~I~v~I~dP~g~~v~~~~~~~~g~f~f~~~~~G~Y~~Cf~N  124 (237)
                      +..++|+||++.++|||+++++++. ++..|.|..||+.||++.|.+|+|++|+...++..+.|.|++...|+|++||+|
T Consensus        21 a~elTfeLp~~aKqC~Y~d~~~~~~~~~~~fqV~tGG~fDVD~~I~aPdgkvI~~~~kk~~~~~~f~ae~~G~Y~fCFsN  100 (209)
T KOG1693|consen   21 ASELTFELPDNAKQCFYEDLKKDDDTTSFEFQVQTGGHFDVDYDIEAPDGKVIYSEKKKRYDSFLFKAEGKGEYTFCFSN  100 (209)
T ss_pred             cccEEEEcCCcchhheeeecccCCceEEEEEEEEeCCceeeEEEEECCCCCEEeeccccccccEEEEEecceEEEEEecC
Confidence            6789999999999999999997765 999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCeEEEEEEEEEeecCcchhhhhhhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhHHHH
Q psy5395         125 QFSRNAGKLVNMYLTVVRYDQWDKYHKEIEDLNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMN  204 (237)
Q Consensus       125 ~~s~~~~k~V~f~i~v~~~~~~~~~~k~~~~l~~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~rv~~  204 (237)
                      ..+.+.+|+|.+++.++++.......   +..+...+.++..+..+++.|+.|.+.|.|.|.||.+.+.+++++++||+|
T Consensus       101 ~fstf~~Kiv~~~~q~~~~~~~~~~~---~~~~~~~~~mena~~~I~~~L~~I~~~q~y~R~RE~rn~~tv~st~~Rv~~  177 (209)
T KOG1693|consen  101 EFSTFSHKIVYMDFQVGEEPPLHPAV---SNRDTALTQMENAIVEIHRALNKIDDTQTYYRLREARNRSTVESTNSRVTW  177 (209)
T ss_pred             ccccccceEeeehhhhccccccCccc---cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhcccchhhH
Confidence            99999999999999988654332211   111235678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHhcccCCCCC
Q psy5395         205 WSVIQILVIAATTTVQVYFVRQLFNSKTNKP  235 (237)
Q Consensus       205 ~sii~ivvli~~s~~Qv~~LkrfF~~K~~~~  235 (237)
                      ||++++++++++++.||..||.||+.|++..
T Consensus       178 ~Sl~e~~~vv~iSi~Qv~ilk~fFt~~r~~~  208 (209)
T KOG1693|consen  178 WSLLEIIAVVVISIAQVFILKFFFTDRRKRY  208 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCcCC
Confidence            9999999999999999999999999998653

>KOG1690|consensus

Probab=100.00  E-value=4.8e-39  Score=257.36  Aligned_cols=185  Identities=20%  Similarity=0.265  Sum_probs=157.3

Q ss_pred             ccccceeEEEEEcCCCcceEEEEcCCCCEEEEEEEEEe----------CCCcceEEEEeCCCCC--EEecceeeccceEE
Q psy5395          42 LPAVAMDYKIHIDPGKEDCFFQYVNPGATFYVNFQVLR----------GGDGMAGFAVRNPNGQ--IVHPYEWKKNAEYQ  109 (237)
Q Consensus        42 L~~~~~~l~f~l~~g~~~Cf~e~v~~~~~i~~~y~v~~----------~~~~~I~v~I~dP~g~--~v~~~~~~~~g~f~  109 (237)
                      |+..+.+++|++.+++++||++++|+|+++.|+|.+.-          .++..+.+.|.+|.++  +|..++..++|.|+
T Consensus        14 l~~~~~a~yFy~~~~e~KCF~eelpk~tmv~G~yk~qlyd~~~~~y~~~p~~gm~VeV~e~fdnnh~Vl~q~~ss~G~ft   93 (215)
T KOG1690|consen   14 LATQVQALYFYIAGTEKKCFIEELPKGTMVTGNYKAQLYDDQLKGYGSYPNIGMHVEVKETFDNNHVVLSQQYSSEGDFT   93 (215)
T ss_pred             HHhhccEEEEEecCCcccchhhhCCCCcEEEeeeeeeeecchhcccccCCCceEEEEeecCCCCceEEEeecCCCCCceE
Confidence            67779999999999999999999999999999999852          1245688999999776  99999999999999


Q ss_pred             EeCCCeeeEEEEEEcCCCCC-CC-eE-EEEEEEEEeecCcchhhhhhhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5395         110 DTPPHGGYYSVCIDNQFSRN-AG-KL-VNMYLTVVRYDQWDKYHKEIEDLNVSVQNFTDSVRTVERNINEILQQQYHARS  186 (237)
Q Consensus       110 f~~~~~G~Y~~Cf~N~~s~~-~~-k~-V~f~i~v~~~~~~~~~~k~~~~l~~~i~~l~~~i~~l~~~l~~i~~eq~~~r~  186 (237)
                      |++..+|+|+||+....+.| +. |+ |.++|.++  ++.+.+++.    .+..+.++.++..|.+++..|+.||.++|.
T Consensus        94 Fta~~~GeH~IC~~s~s~awf~~aklRvhld~qvG--~~a~l~a~~----ke~~k~l~~Rv~~L~~~~~~IrkEQ~~~R~  167 (215)
T KOG1690|consen   94 FTALTPGEHRICIQSNSTAWFNGAKLRVHLDIQVG--DHANLDAQI----KETDKLLEGRVRQLNSRLESIRKEQNLQRE  167 (215)
T ss_pred             EEccCCCceEEEEecccchhhccceEEEEEEEeeC--chhhhhhhh----hhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998665533 22 32 55555554  333322331    235778889999999999999999999999


Q ss_pred             HHHhhHHHHHhHHhHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCC
Q psy5395         187 REARDFNLLEDNNRYVMNWSVIQILVIAATTTVQVYFVRQLFNSKT  232 (237)
Q Consensus       187 re~~~~~~~est~~rv~~~sii~ivvli~~s~~Qv~~LkrfF~~K~  232 (237)
                      ||+++|++.||+|+|++||+++|+++|+++|+||+.|||+||..++
T Consensus       168 RE~~FR~tSES~NsRvm~Wsv~Q~vvL~~tc~wQmrhL~~FFvkqK  213 (215)
T KOG1690|consen  168 REETFRDTSESANSRVMWWSVAQLVVLLVTCIWQMRHLKSFFVKQK  213 (215)
T ss_pred             HHHHHHhhhhhhcceeeehhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999998775

>KOG1691|consensus

Probab=100.00  E-value=3.7e-37  Score=250.04  Aligned_cols=186  Identities=17%  Similarity=0.332  Sum_probs=166.5

Q ss_pred             ccccceeEEEEEcCCCcceEEEEcCCCCEEEEEEEEEeCCCc---ceEEEEeCCCCCEEecceeeccceEEEeCCCeeeE
Q psy5395          42 LPAVAMDYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRGGDG---MAGFAVRNPNGQIVHPYEWKKNAEYQDTPPHGGYY  118 (237)
Q Consensus        42 L~~~~~~l~f~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~~~---~I~v~I~dP~g~~v~~~~~~~~g~f~f~~~~~G~Y  118 (237)
                      ++..+.++.|+|++++.+|+.|++.+|..+.|.|.+.++...   .+++.|+||.|+.+++.++..+|+|+|++.+.|.|
T Consensus        16 ~~~~~~a~~f~v~~~~~kCi~EeI~~n~lv~g~y~i~~~~~~~~~~~~~~Vts~~G~~~~~~env~~gqFaFta~e~~~y   95 (210)
T KOG1691|consen   16 LLPLVHALRFDVPSKTTKCISEEIHENVLVVGDYEIINPNGDHSHKLSVKVTSPYGNNLHSKENVTKGQFAFTAEESGMY   95 (210)
T ss_pred             HhhhhheEEEEecCCCCEeehhhhccCeEEEEEEEEecCCCCccceEEEEEEcCCCceeehhhccccceEEEEeccCCcE
Confidence            456789999999999999999999999999999999875433   59999999999999999999999999999999999


Q ss_pred             EEEEEcCCCCCCC---eEEEEEEEEEe-ecCcchhhhhhhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy5395         119 SVCIDNQFSRNAG---KLVNMYLTVVR-YDQWDKYHKEIEDLNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNL  194 (237)
Q Consensus       119 ~~Cf~N~~s~~~~---k~V~f~i~v~~-~~~~~~~~k~~~~l~~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~  194 (237)
                      .+||.|......+   ..|.|++..|- +++|++.+|.     ++++++|.++++|.+.+..|+++..|+|.||+++|++
T Consensus        96 ~~Cf~~~~~~~~p~~~~~I~ld~k~Gv~akdw~~IAKk-----eklep~E~elrrLed~~~sI~~e~~YLr~REeemr~~  170 (210)
T KOG1691|consen   96 EACFTADVPGHKPETKRSIDLDWKTGVEAKDWDSIAKK-----EKLEPLEVELRRLEDLVESIHEEMYYLREREEEMRNT  170 (210)
T ss_pred             EEEEecccCCCCCCcceEEEEEeeccccccchHHHHhh-----hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999994332223   34566665553 4689988874     5899999999999999999999999999999999999


Q ss_pred             HHhHHhHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCC
Q psy5395         195 LEDNNRYVMNWSVIQILVIAATTTVQVYFVRQLFNSKT  232 (237)
Q Consensus       195 ~est~~rv~~~sii~ivvli~~s~~Qv~~LkrfF~~K~  232 (237)
                      +|+||+||.|+|++-+++++++++||++|||+||++|+
T Consensus       171 nesTNsrv~~fSi~Sl~v~~~va~~QvlyLK~fF~kKK  208 (210)
T KOG1691|consen  171 NESTNSRVAWFSILSLVVLLSVAGWQVLYLKRFFQKKK  208 (210)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999987

>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins

Probab=100.00  E-value=5.7e-38  Score=254.98  Aligned_cols=177  Identities=29%  Similarity=0.536  Sum_probs=5.5

Q ss_pred             eEEEEEcCCCcceEEEEcCCCCEEEEEEEEEeCC-CcceEEEEe--CCCCCEEecceee-ccceEEEeCCCeeeEEEEEE
Q psy5395          48 DYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRGG-DGMAGFAVR--NPNGQIVHPYEWK-KNAEYQDTPPHGGYYSVCID  123 (237)
Q Consensus        48 ~l~f~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~-~~~I~v~I~--dP~g~~v~~~~~~-~~g~f~f~~~~~G~Y~~Cf~  123 (237)
                      |++|+|+||+++||++++++|+.+.+.|++.+++ ..+|++.|+  +|+|++++..... ++|+|+|+++++|+|++||+
T Consensus         1 a~~f~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~~~~~v~~~i~~~~~~~~~i~~~~~~~~~~~f~f~~~~~G~y~iCf~   80 (183)
T PF01105_consen    1 ALTFELEPGETECFYEEVPKGTTIRGSYRVTDGGGAYDVDFTIRDPDPNGEVIYSKSDKESEGSFSFTAKESGEYQICFD   80 (183)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEECCCCcEEEEEEcCCCcEEEEEEEEeeccccceEEEEEEecccCCceeeeecccccCCcEEEEeccCCCEEEEEE
Confidence            6899999999999999999999999999999887 788999999  5566888888545 55799999999999999999


Q ss_pred             cCCCCCCC-eEEEEEEEEEeec-CcchhhhhhhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhH
Q psy5395         124 NQFSRNAG-KLVNMYLTVVRYD-QWDKYHKEIEDLNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRY  201 (237)
Q Consensus       124 N~~s~~~~-k~V~f~i~v~~~~-~~~~~~k~~~~l~~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~r  201 (237)
                      |+.+.+++ +.|+|+++++.+. +.++.++     ++++++++..+++|.+.++.|.++|.|++.|+++|+++++++++|
T Consensus        81 n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~l~~~l~~i~~~q~~~~~r~~~~~~~~es~~~~  155 (183)
T PF01105_consen   81 NSSSSFSPSKRVSFDIDVGNENKDYKNVAK-----KEHLDPLEESLEKLESNLKEIKDEQKYLREREERHRQLNESTNSR  155 (183)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCCCccccEEEEEEEEEeecccchhhhhh-----hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence            99987666 8899999887532 2222232     258999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhcc
Q psy5395         202 VMNWSVIQILVIAATTTVQVYFVRQLFN  229 (237)
Q Consensus       202 v~~~sii~ivvli~~s~~Qv~~LkrfF~  229 (237)
                      +++|+++++++++++++||+++||+||+
T Consensus       156 i~~~si~~~~vli~~~~~Qv~~lk~~f~  183 (183)
T PF01105_consen  156 IMWWSIIQIVVLILVSVWQVYYLKKFFK  183 (183)
T ss_dssp             ----------------------HHHHHH
T ss_pred             EEhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999995

It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.

>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking

Probab=93.88  E-value=0.83  Score=35.39  Aligned_cols=31  Identities=26%  Similarity=0.296  Sum_probs=27.0

Q ss_pred             EEeCCCeeeEEEEEEcCCCCCCCeEEEEEEE
Q psy5395         109 QDTPPHGGYYSVCIDNQFSRNAGKLVNMYLT  139 (237)
Q Consensus       109 ~f~~~~~G~Y~~Cf~N~~s~~~~k~V~f~i~  139 (237)
                      +++.+..|.|-++|+|+.|.+.+|.+.+.|-
T Consensus       104 s~~c~~~GvYvLkFDNSYS~~rsK~l~Y~V~  134 (136)
T PF13897_consen  104 SHTCPGPGVYVLKFDNSYSWFRSKKLYYRVY  134 (136)
T ss_pred             EEECCCCeEEEEEeeCcceeEEeeEEEEEEE
Confidence            6677899999999999999888899877763

>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white

Probab=93.69  E-value=1.4  Score=31.68  Aligned_cols=62  Identities=18%  Similarity=0.319  Sum_probs=42.0

Q ss_pred             CCCCEEEEEEEEEeCC-------CcceEEEEeCCCCCEEeccee---eccceEEEe--CC---CeeeEEEEEEcCCC
Q psy5395          66 NPGATFYVNFQVLRGG-------DGMAGFAVRNPNGQIVHPYEW---KKNAEYQDT--PP---HGGYYSVCIDNQFS  127 (237)
Q Consensus        66 ~~~~~i~~~y~v~~~~-------~~~I~v~I~dP~g~~v~~~~~---~~~g~f~f~--~~---~~G~Y~~Cf~N~~s  127 (237)
                      .+|++|.+.--+.+.+       ...+.+.|+||+|+.+..+..   ...|.+++.  .+   ..|.|++=+.....
T Consensus        12 rPGetV~~~~~~~~~~~~~~~~~~~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~~~   88 (99)
T PF01835_consen   12 RPGETVHFRAIVRDLDNDFKPPANSPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTDDD   88 (99)
T ss_dssp             -TTSEEEEEEEEEEECTTCSCESSEEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEETTT
T ss_pred             CCCCEEEEEEEEeccccccccccCCceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEccC
Confidence            3788888877765432       247999999999999998776   245655433  32   47999998887543

A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....

>smart00557 IG_FLMN Filamin-type immunoglobulin domains

Probab=93.46  E-value=0.87  Score=32.71  Aligned_cols=46  Identities=26%  Similarity=0.350  Sum_probs=33.8

Q ss_pred             CCcceEEEEeCCCCCEEecc-eeeccceE--EEeCCCeeeEEEEEEcCC
Q psy5395          81 GDGMAGFAVRNPNGQIVHPY-EWKKNAEY--QDTPPHGGYYSVCIDNQF  126 (237)
Q Consensus        81 ~~~~I~v~I~dP~g~~v~~~-~~~~~g~f--~f~~~~~G~Y~~Cf~N~~  126 (237)
                      +..++.+.|.+|+|+.+.-. .+..+|.|  +|+....|.|.+.+.-..
T Consensus        30 G~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~P~~~G~~~i~V~~~g   78 (93)
T smart00557       30 GGGELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTVKFGG   78 (93)
T ss_pred             CCCcEEEEEECCCCCeeEeEEEeCCCCEEEEEEEeCCCEeEEEEEEECC
Confidence            34679999999999655443 34556665  688999999999987553

These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).

>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=90.72  E-value=1  Score=30.41  Aligned_cols=61  Identities=23%  Similarity=0.396  Sum_probs=40.7

Q ss_pred             ceEEEEcCCCCEEEEEEEEEeCCCcceEEEEeCCCCCEEecceeec-----cceEEEeCCCeeeEEEEE
Q psy5395          59 DCFFQYVNPGATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYEWKK-----NAEYQDTPPHGGYYSVCI  122 (237)
Q Consensus        59 ~Cf~e~v~~~~~i~~~y~v~~~~~~~I~v~I~dP~g~~v~~~~~~~-----~g~f~f~~~~~G~Y~~Cf  122 (237)
                      ..|...+++|..+.+.  +... ..+.++.+++++|..+......+     .....|+++.+|.|-+=.
T Consensus         3 D~y~f~v~ag~~l~i~--l~~~-~~d~dl~l~~~~g~~~~~~d~~~~~~~~~~~i~~~~~~~GtYyi~V   68 (70)
T PF04151_consen    3 DYYSFTVPAGGTLTID--LSGG-SGDADLYLYDSNGNSLASYDDSSQSGGNDESITFTAPAAGTYYIRV   68 (70)
T ss_dssp             EEEEEEESTTEEEEEE--ECET-TSSEEEEEEETTSSSCEECCCCTCETTSEEEEEEEESSSEEEEEEE
T ss_pred             EEEEEEEcCCCEEEEE--EcCC-CCCeEEEEEcCCCCchhhheecCCCCCCccEEEEEcCCCEEEEEEE
Confidence            3567778888886655  3333 23677899999987666633222     234568889999998743

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....

>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod

Probab=84.47  E-value=4.6  Score=28.86  Aligned_cols=43  Identities=19%  Similarity=0.309  Sum_probs=30.6

Q ss_pred             cceEEEEeCCCCC----EEec-ceeeccceE--EEeCCCeeeEEEEEEcC
Q psy5395          83 GMAGFAVRNPNGQ----IVHP-YEWKKNAEY--QDTPPHGGYYSVCIDNQ  125 (237)
Q Consensus        83 ~~I~v~I~dP~g~----~v~~-~~~~~~g~f--~f~~~~~G~Y~~Cf~N~  125 (237)
                      ..+.+.|.+|++.    .+.- -....+|.|  +|+++..|.|++.+.-.
T Consensus        42 ~~~~v~i~~p~~~~~~~~~~~~v~~~~~G~y~v~y~p~~~G~y~i~V~~~   91 (101)
T PF00630_consen   42 DEFQVTITSPDGKEEPVPVPVEVIDNGDGTYTVSYTPTEPGKYKISVKIN   91 (101)
T ss_dssp             SEEEEEEESSSSESS--EEEEEEEEESSSEEEEEEEESSSEEEEEEEEES
T ss_pred             ceeEEEEeCCCCCccccccceEEEECCCCEEEEEEEeCccEeEEEEEEEC
Confidence            3577889999987    3332 234566766  57789999999988643

Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....

>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A

Probab=83.80  E-value=6.1  Score=27.54  Aligned_cols=33  Identities=15%  Similarity=0.308  Sum_probs=24.3

Q ss_pred             CCEEEEEEEEEeCCCcceEEEEeCCCCCEEecce
Q psy5395          68 GATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYE  101 (237)
Q Consensus        68 ~~~i~~~y~v~~~~~~~I~v~I~dP~g~~v~~~~  101 (237)
                      +....+.|.+..+ ...+.+.|+|.+|++|.+..
T Consensus        11 ~~~~~~~~~l~~~-a~~v~v~I~d~~G~~V~t~~   43 (81)
T PF13860_consen   11 GTKGSIEYTLPED-ADNVTVTIYDSNGQVVRTIS   43 (81)
T ss_dssp             TCEEEEEEEECSS-CEEEEEEEEETTS-EEEEEE
T ss_pred             CEEEEEEEeCCCc-ccEEEEEEEcCCCCEEEEEE
Confidence            3477888887654 34689999999999998753

>PF09315 DUF1973: Domain of unknown function (DUF1973); InterPro: IPR015394 These functionally uncharacterised domains are found in various eukaryotic calcium-dependent chloride channels

Probab=83.26  E-value=18  Score=29.50  Aligned_cols=55  Identities=15%  Similarity=0.219  Sum_probs=35.7

Q ss_pred             ceEEEEeCCCCCEEecc-eeeccceEEEeC---CCeeeEEEEEEcCCCCCCCeEEEEEEEE
Q psy5395          84 MAGFAVRNPNGQIVHPY-EWKKNAEYQDTP---PHGGYYSVCIDNQFSRNAGKLVNMYLTV  140 (237)
Q Consensus        84 ~I~v~I~dP~g~~v~~~-~~~~~g~f~f~~---~~~G~Y~~Cf~N~~s~~~~k~V~f~i~v  140 (237)
                      ...+.+.+|+|+.+... .+.......+..   .+.|.+++.+.|..+.  ++.+.+.+.-
T Consensus        42 ~p~i~L~~P~G~~~~~~~~d~~~~~~~i~ipg~ae~G~W~y~i~~~~~~--~q~v~vtVtS  100 (179)
T PF09315_consen   42 PPSITLTDPSGTVYTTFTTDSNSKTARIQIPGTAEVGTWTYSITNTSSS--SQTVTVTVTS  100 (179)
T ss_pred             CceEEEECCCCCEEeeeEEcccccEEEEECCCCcccccEEEEEecCCCC--cceEEEEEEe
Confidence            45678999999998772 223333334443   4699999999887654  4555555443

>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes

Probab=81.89  E-value=5.4  Score=29.37  Aligned_cols=58  Identities=16%  Similarity=0.235  Sum_probs=38.9

Q ss_pred             CCCEEEEEEEEEeCCCcceEEEEeCCCCCEEecceeec--cceEEEe--CCCeeeEEEEEEcCCC
Q psy5395          67 PGATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYEWKK--NAEYQDT--PPHGGYYSVCIDNQFS  127 (237)
Q Consensus        67 ~~~~i~~~y~v~~~~~~~I~v~I~dP~g~~v~~~~~~~--~g~f~f~--~~~~G~Y~~Cf~N~~s  127 (237)
                      .|..+.+.|..   ...++.++|+|.+|+++|+.....  ....++.  ....|.|.+=+.+...
T Consensus        35 ~~~~l~I~F~~---~~~~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~~g   96 (106)
T PF11589_consen   35 DGNNLSIEFES---PIGDVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNGNG   96 (106)
T ss_dssp             ETTEEEEEESS-----SEEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEECTC
T ss_pred             eCCEEEEEEcC---CCCCEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeCCC
Confidence            35677777753   235689999999999999975333  2235555  4579999999999875

The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	237
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	97.2
2d7n_A	93	Filamin-C; beta-sandwich, immunoglobulin-like fold	93.14
2ee9_A	95	Filamin-B; beta-sandwich, immunoglobulin-like fold	92.52
2d7m_A	115	Filamin-C; beta-sandwich, immunoglobulin-like fold	91.76
4dzg_A	114	PLIG; lysozyme inhibitor, G-type lysozyme binding,	91.59
2dj4_A	108	Filamin-B; beta-sandwich, immunoglobulin-like fold	91.16
2dmb_A	124	Filamin-B; beta-sandwich, immunoglobulin-like fold	90.91
2dlg_A	102	Filamin-B; beta-sandwich, immunoglobulin-like fold	90.84
2p9r_A	102	Alpha-2-M, alpha-2-macroglobulin; human alpha2-mac	90.42
2dmc_A	116	Filamin-B; beta-sandwich, immunoglobulin-like fold	89.84
3cnk_A	89	Filamin-A; FLNA24, X-RAY crystalography, homodimer	89.13
2e9j_A	119	Filamin-B; beta-sandwich, immunoglobulin-like fold	88.62
3rgh_A	100	Filamin-A; cell adhesion, cytoskeleton-complex, di	88.52
4g9s_B	111	Inhibitor of G-type lysozyme, goose-type lysozyme;	87.92
2d7p_A	112	Filamin-C; beta-sandwich, immunoglobulin-like fold	86.45
2dia_A	113	Filamin-B; beta-sandwich, immunoglobulin-like fold	85.02
2k9u_A	119	Gamma filamin; cytoskeletal complex, alternative s	84.64
2ee6_A	105	Filamin-B; beta-sandwich, immunoglobulin-like fold	84.26
2w0p_A	94	Filamin-A; alternative splicing, cytoskeleton/comp	84.24
2dic_A	105	Filamin-B; beta-sandwich, immunoglobulin-like fold	82.85
2eea_A	115	Filamin-B; beta-sandwich, immunoglobulin-like fold	82.56
4b7l_A	347	Filamin-B; structural protein, FR 1 filamin hinge	82.51
2bp3_A	97	Filamin A; structural protein, cytoskeleton/comple	81.98
1v05_A	96	Filamin C; actin-binding protein, immunoglobulin;	80.45

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*

Probab=97.20  E-value=0.0064  Score=54.24  Aligned_cols=88  Identities=23%  Similarity=0.276  Sum_probs=65.4

Q ss_pred             EEEEcCCCcceEEEEcC-CCCEEEEEEEEEeCCCcceEEEEeC-----CC---C--CEEeccee------eccceEEEeC
Q psy5395          50 KIHIDPGKEDCFFQYVN-PGATFYVNFQVLRGGDGMAGFAVRN-----PN---G--QIVHPYEW------KKNAEYQDTP  112 (237)
Q Consensus        50 ~f~l~~g~~~Cf~e~v~-~~~~i~~~y~v~~~~~~~I~v~I~d-----P~---g--~~v~~~~~------~~~g~f~f~~  112 (237)
                      ++.|.+|+...+-..+. +|+.+...|.+.   ..||.|.|+-     ++   |  ..+.....      ..+|  ++.+
T Consensus       281 ~~~V~~g~~~~v~~~v~~~g~~l~W~f~~~---~~DI~F~v~~~~~~~~~~~~~~~~~v~p~~r~~~~~~~~~G--~~~~  355 (403)
T 1olm_A          281 SVQISRGSSHQVEYEILFPGCVLRWQFMSD---GADVGFGIFLKTKMGERQRAGEMTEVLPNQRYNSHLVPEDG--TLTC  355 (403)
T ss_dssp             EEEECTTCEEEEEEEECSTTCEEEEEEEES---SSCEEEEEEEC----CCCCGGGSEEEEEEEEECTTTSCEEE--EEEC
T ss_pred             EEEEcCCCEEEEEEEEcCCCCEEEEEEEec---CCcEEEEEEEecccccccCCCcceEEeeeeeecCccccccC--EEEc
Confidence            48999999999998886 899999999984   2466677651     11   1  12332211      1244  5779


Q ss_pred             CCeeeEEEEEEcCCCCCCCeEEEEEEEEEe
Q psy5395         113 PHGGYYSVCIDNQFSRNAGKLVNMYLTVVR  142 (237)
Q Consensus       113 ~~~G~Y~~Cf~N~~s~~~~k~V~f~i~v~~  142 (237)
                      +++|.|.++|+|+.|.+.+|.|.+.+.+..
T Consensus       356 ~~~G~y~l~fdNs~S~~~~k~l~y~v~v~~  385 (403)
T 1olm_A          356 SDPGIYVLRFDNTYSFIHAKKVNFTVEVLL  385 (403)
T ss_dssp             CSCEEEEEEEECTTCCCCSEEEEEEEEEEC
T ss_pred             CCCeEEEEEEeccccceeceEEEEEEEEeC
Confidence            999999999999999878899999998864

>2d7n_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=93.14  E-value=0.6  Score=32.82  Aligned_cols=47  Identities=21%  Similarity=0.270  Sum_probs=34.7

Q ss_pred             CcceEEEEeCCCCCEEecc-eeeccceE--EEeCCCeeeEEEEEEcCCCC
Q psy5395          82 DGMAGFAVRNPNGQIVHPY-EWKKNAEY--QDTPPHGGYYSVCIDNQFSR  128 (237)
Q Consensus        82 ~~~I~v~I~dP~g~~v~~~-~~~~~g~f--~f~~~~~G~Y~~Cf~N~~s~  128 (237)
                      ..++.+.|.+|+|+.+... .+..+|.|  +|++++.|.|.+++.-....
T Consensus        21 ~~~l~v~V~~PsG~~~~~~v~d~~dGtY~v~ytP~e~G~h~v~V~~~g~~   70 (93)
T 2d7n_A           21 KGELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDGNH   70 (93)
T ss_dssp             SSCEEEEEECTTSCEECCEEEECSSSCEEEEECCSSCEEEEEEEEESSSC
T ss_pred             CCCEEEEEECCCCCccceEEEECCCCEEEEEEEccCCEEEEEEEEECCEe
Confidence            4568999999999865543 33556655  67899999999999755443

>2ee9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.52  E-value=0.48  Score=33.52  Aligned_cols=47  Identities=21%  Similarity=0.186  Sum_probs=35.0

Q ss_pred             CCcceEEEEeCCCCCEEecc-eeeccceE--EEeCCCeeeEEEEEEcCCC
Q psy5395          81 GDGMAGFAVRNPNGQIVHPY-EWKKNAEY--QDTPPHGGYYSVCIDNQFS  127 (237)
Q Consensus        81 ~~~~I~v~I~dP~g~~v~~~-~~~~~g~f--~f~~~~~G~Y~~Cf~N~~s  127 (237)
                      +..++.+.|.+|+|+.+... .+..+|.|  +|+.++.|.|.+++.-...
T Consensus        28 g~~~ltv~V~~PsG~~~~~~v~d~~dGtY~v~ytP~e~G~h~v~V~~~G~   77 (95)
T 2ee9_A           28 RKGEITGEVHMPSGKTATPEIVDNKDGTVTVRYAPTEVGLHEMHIKYMGS   77 (95)
T ss_dssp             CTTSEEEEEECTTSCEECCEEEECSSSCEEEECCCCSSEEEEEEEEESSC
T ss_pred             CCCCEEEEEECCCCCccccEEEeCCCCeEEEEEEecCCEeEEEEEEECCE
Confidence            45678999999999866543 23556655  5778999999999975543

>2d7m_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=91.76  E-value=0.93  Score=32.81  Aligned_cols=47  Identities=19%  Similarity=0.375  Sum_probs=33.4

Q ss_pred             CCcceEEEEeCCCCCEEecc-eeeccceE--EEeCCCeeeEEEEEEcCCC
Q psy5395          81 GDGMAGFAVRNPNGQIVHPY-EWKKNAEY--QDTPPHGGYYSVCIDNQFS  127 (237)
Q Consensus        81 ~~~~I~v~I~dP~g~~v~~~-~~~~~g~f--~f~~~~~G~Y~~Cf~N~~s  127 (237)
                      +...+.+.|.+|+|+.+... .+..+|.|  +|+.++.|.|.+.+.-...
T Consensus        42 G~~~l~V~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g~   91 (115)
T 2d7m_A           42 GEGLLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGGD   91 (115)
T ss_dssp             CSSCEEEEEECTTSCBCCEEEEECSSSCEEEEECCCSCEEEEEEEEESSC
T ss_pred             CCCEEEEEEECCCCCeeeeEEEECCCCEEEEEEEeCCCceEEEEEEECCE
Confidence            44568899999998644332 23456665  5788999999999975543

>4dzg_A PLIG; lysozyme inhibitor, G-type lysozyme binding, hydrolase inhib; HET: MLY; 2.02A {Aeromonas hydrophila subsp}

Probab=91.59  E-value=0.33  Score=35.51  Aligned_cols=75  Identities=16%  Similarity=0.109  Sum_probs=53.5

Q ss_pred             eEEEEEcCCCcceEEEEcCCCCEEEEEEEEEeCCCcceEEEEeCCCCCE---EecceeeccceEEEeCCCeeeEEEEEEc
Q psy5395          48 DYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRGGDGMAGFAVRNPNGQI---VHPYEWKKNAEYQDTPPHGGYYSVCIDN  124 (237)
Q Consensus        48 ~l~f~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~~~~I~v~I~dP~g~~---v~~~~~~~~g~f~f~~~~~G~Y~~Cf~N  124 (237)
                      .+.=.|.+++...+...+.+|+.+.+..  ...  ..+.+.|.+|+|+.   ++..+....+.++-+.+.+|.|.+=+..
T Consensus        19 ~v~G~I~g~~~~~Y~~~a~aGQ~l~V~l--s~~--~~~~f~I~~P~~~~~~~l~~g~~~~~~~~~g~LP~sG~Y~i~V~~   94 (114)
T 4dzg_A           19 QLXGSFTGYDTIHYTLVAXAGQTMTVXI--GGS--SNANFNVFAPGAQPGQAEAIGRNDGDGQWQGALPASGXYLIQVYQ   94 (114)
T ss_dssp             EC-CCCBTTCCEEEECCC-CCCEEEC-C--EES--TTCEEEEECTTCCTTTSCCSEECCTTSCCEEECSSCC-CEEEEEC
T ss_pred             EEeEEecCCCceEEEEEecCCCEEEEEe--CCC--CcEEEEEECCCCCcccceeccccCCcceEEEEecCCCcEEEEEEe
Confidence            3444678888899998899999999887  222  34678899999974   3444434456888899999999999987


Q ss_pred             CC
Q psy5395         125 QF  126 (237)
Q Consensus       125 ~~  126 (237)
                      ..
T Consensus        95 ~r   96 (114)
T 4dzg_A           95 MR   96 (114)
T ss_dssp             CH
T ss_pred             cc
Confidence            63

>2dj4_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=91.16  E-value=1.2  Score=31.81  Aligned_cols=46  Identities=20%  Similarity=0.159  Sum_probs=33.6

Q ss_pred             CCcceEEEEeCCCCCEEecc-eeeccceE--EEeCCCeeeEEEEEEcCC
Q psy5395          81 GDGMAGFAVRNPNGQIVHPY-EWKKNAEY--QDTPPHGGYYSVCIDNQF  126 (237)
Q Consensus        81 ~~~~I~v~I~dP~g~~v~~~-~~~~~g~f--~f~~~~~G~Y~~Cf~N~~  126 (237)
                      +...+.+.|.+|+|..+... .+..+|.|  +|+.+..|.|.+.+.-..
T Consensus        41 G~~~l~V~i~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g   89 (108)
T 2dj4_A           41 GLAPLEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVKYAD   89 (108)
T ss_dssp             CSCCEEEEEECSSSCEECCCCEECSSSEEEEEECCSSCEEEEEEEEESS
T ss_pred             CCceEEEEEECCCCCEeeeEEEECCCCEEEEEEEeCCCeeEEEEEEECC
Confidence            44568899999999655443 34566766  577899999999997544

>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=90.91  E-value=1.4  Score=32.43  Aligned_cols=46  Identities=20%  Similarity=0.250  Sum_probs=33.3

Q ss_pred             CCcceEEEEeCCCCCEEecc-eeeccceE--EEeCCCeeeEEEEEEcCC
Q psy5395          81 GDGMAGFAVRNPNGQIVHPY-EWKKNAEY--QDTPPHGGYYSVCIDNQF  126 (237)
Q Consensus        81 ~~~~I~v~I~dP~g~~v~~~-~~~~~g~f--~f~~~~~G~Y~~Cf~N~~  126 (237)
                      +...+.+.|.+|+|..+... .+..+|.|  +|+.+..|.|.+.+.-..
T Consensus        41 G~~~l~V~I~~p~g~~v~~~v~d~~dGty~V~Y~p~~~G~y~I~V~~~g   89 (124)
T 2dmb_A           41 GKGKVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPGTYVIYVRFGG   89 (124)
T ss_dssp             CSCCEEEEEECTTSCBCCCEEEECTTSCEEEEEECSSCEEEEEEEEESS
T ss_pred             CCCcEEEEEECCCCCEEeeEEEeCCCCEEEEEEEcCCCEEEEEEEEECC
Confidence            34568899999998654433 23456665  588999999999997544

>2dlg_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=90.84  E-value=0.46  Score=34.01  Aligned_cols=47  Identities=13%  Similarity=0.102  Sum_probs=35.0

Q ss_pred             CCcceEEEEeCCCCCEEecc-eeeccceE--EEeCCCeeeEEEEEEcCCC
Q psy5395          81 GDGMAGFAVRNPNGQIVHPY-EWKKNAEY--QDTPPHGGYYSVCIDNQFS  127 (237)
Q Consensus        81 ~~~~I~v~I~dP~g~~v~~~-~~~~~g~f--~f~~~~~G~Y~~Cf~N~~s  127 (237)
                      +..++.+.|.+|+|..+.-. ....+|.|  +|++++.|.|.+.+.-...
T Consensus        29 g~~~l~v~v~~P~G~~~~~~v~d~~dGty~v~ytP~e~G~h~v~V~~~g~   78 (102)
T 2dlg_A           29 NSSDMSAHVTSPSGRVTEAEIVPMGKNSHCVRFVPQEMGVHTVSVKYRGQ   78 (102)
T ss_dssp             CGGGCEEEEECTTSCEEECEEEECSSSEEEEEBCCCTTCEEEEEEESSSS
T ss_pred             CCCCEEEEEECCCCCEeeeEEEECCCCEEEEEEEecCCEeEEEEEEECCE
Confidence            44678999999999865543 23456666  5789999999999975543

>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}

Probab=90.42  E-value=3.3  Score=28.90  Aligned_cols=61  Identities=15%  Similarity=0.271  Sum_probs=42.3

Q ss_pred             CCCCEEEEEEEEEeCC-----CcceEEEEeCCCCCEEeccee--eccceE--EEeC---CCeeeEEEEEEcCC
Q psy5395          66 NPGATFYVNFQVLRGG-----DGMAGFAVRNPNGQIVHPYEW--KKNAEY--QDTP---PHGGYYSVCIDNQF  126 (237)
Q Consensus        66 ~~~~~i~~~y~v~~~~-----~~~I~v~I~dP~g~~v~~~~~--~~~g~f--~f~~---~~~G~Y~~Cf~N~~  126 (237)
                      .+|+++++..-+.+.+     ...+.+.|.||+|+.+.++..  ...|.+  .|..   ...|.|++-.....
T Consensus        14 rPGetV~~~~~~~~~~~~p~~~~~~~v~l~dp~g~~v~~~~~~~~~~G~~~~~f~Lp~~~~~G~y~i~~~~~~   86 (102)
T 2p9r_A           14 KPGQTVKFRVVSMDENFHPLNELIPLVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQKKS   86 (102)
T ss_dssp             CTTCEEEEEEEEECGGGCBCCCEEEEEEEECTTSCEEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEEECTT
T ss_pred             CCCCEEEEEEEEECCCCcCCCCCceEEEEECCCCCEEEEEEeecCCCCEEEEEEECCCCCCCeeEEEEEEECC
Confidence            4788888887766432     223688999999999988632  234544  3443   35799999998753

>2dmc_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=89.84  E-value=0.53  Score=34.45  Aligned_cols=61  Identities=13%  Similarity=0.050  Sum_probs=40.0

Q ss_pred             CCCCEEEEEEEEEeCCCcceEEEEeCCCCCEEecc-eeeccceE--EEeCCCeeeEEEEEEcCC
Q psy5395          66 NPGATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPY-EWKKNAEY--QDTPPHGGYYSVCIDNQF  126 (237)
Q Consensus        66 ~~~~~i~~~y~v~~~~~~~I~v~I~dP~g~~v~~~-~~~~~g~f--~f~~~~~G~Y~~Cf~N~~  126 (237)
                      ..|....+.....+.+..++.+.|.+|+|+.+-.. ....+|.|  +|+.++.|.|.+.+.-..
T Consensus        28 ~vg~~~~f~v~~~~ag~~~l~v~v~~PsG~~~~~~v~~~~~g~y~v~ftP~e~G~h~v~V~~~g   91 (116)
T 2dmc_A           28 KLGSAADFLLDISETDLSSLTASIKAPSGRDEPCLLKRLPNNHIGISFIPREVGEHLVSIKKNG   91 (116)
T ss_dssp             CTTSCEEEECCCSCCCSTTBCCEEECTTSCBCCEEEEEETTTEEEEEECCCSCEEEEEECBBSS
T ss_pred             ccCCceEEEEEecCCCCCCEEEEEECCCCCEEeeEEEeCCCCeEEEEEEeCCCeeEEEEEEECC
Confidence            34444444433333445678999999999754432 23456665  688999999999997544

>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; 1.65A {Homo sapiens}

Probab=89.13  E-value=1.4  Score=30.18  Aligned_cols=46  Identities=15%  Similarity=0.165  Sum_probs=31.5

Q ss_pred             CCcceEEEEeCCCCCEEec-ceeeccceE--EEeCCCeeeEEEEEEcCC
Q psy5395          81 GDGMAGFAVRNPNGQIVHP-YEWKKNAEY--QDTPPHGGYYSVCIDNQF  126 (237)
Q Consensus        81 ~~~~I~v~I~dP~g~~v~~-~~~~~~g~f--~f~~~~~G~Y~~Cf~N~~  126 (237)
                      +...+.+.|.+|+|..+.. -.+..+|.|  +|+.++.|.|.+.+.-..
T Consensus        28 G~~~l~v~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g   76 (89)
T 3cnk_A           28 GNNMLLVGVHGPRTPCEEILVKHVGSRLYSVSYLLKDKGEYTLVVKWGH   76 (89)
T ss_dssp             CSCCEEEEEECSSSCCSEEEEEEEETTEEEEEEECCSCEEEEEEEEETT
T ss_pred             CCCcEEEEEECCCCCceeEEEEECCCCEEEEEEEECCCccEEEEEEECC
Confidence            3456788889999853222 134556665  578999999999987443

>2e9j_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.62  E-value=1.1  Score=32.69  Aligned_cols=47  Identities=17%  Similarity=0.346  Sum_probs=33.0

Q ss_pred             CCCcceEEEEeCCCCCEEecc-eeeccceE--EEeCCCeeeEEEEEEcCC
Q psy5395          80 GGDGMAGFAVRNPNGQIVHPY-EWKKNAEY--QDTPPHGGYYSVCIDNQF  126 (237)
Q Consensus        80 ~~~~~I~v~I~dP~g~~v~~~-~~~~~g~f--~f~~~~~G~Y~~Cf~N~~  126 (237)
                      .+...+.+.|.+|+|..+... .+..+|.|  +|+....|.|.+.+.-..
T Consensus        51 aG~~~l~v~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g  100 (119)
T 2e9j_A           51 AGEGLLAVQITDQEGKPKRAIVHDNKDGTYAVTYIPDKTGRYMIGVTYGG  100 (119)
T ss_dssp             CCCCCEECCEECTTCCCCCEEEEECCSSEEEEEECCCSCSEEEECCEESS
T ss_pred             CCCCeEEEEEECCCCCEEEEEEEECCCCEEEEEEEeCCCEEEEEEEEECC
Confidence            345578889999998643332 23556665  577899999999987544

>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0

Probab=88.52  E-value=1.4  Score=31.10  Aligned_cols=44  Identities=18%  Similarity=0.224  Sum_probs=30.5

Q ss_pred             CCcceEEEEeCCCCCEEecc-eeeccceE--EEeCCCeeeEEEEEEc
Q psy5395          81 GDGMAGFAVRNPNGQIVHPY-EWKKNAEY--QDTPPHGGYYSVCIDN  124 (237)
Q Consensus        81 ~~~~I~v~I~dP~g~~v~~~-~~~~~g~f--~f~~~~~G~Y~~Cf~N  124 (237)
                      +...+.+.|.+|+|..+.-. .+..+|.|  +|+.+..|.|.+.+.=
T Consensus        37 G~~~l~v~i~~~~g~~~~~~v~d~~dGty~V~Y~p~~~G~y~i~V~~   83 (100)
T 3rgh_A           37 GSAELTIEICSEAGLPAEVYIQDHGDGTHTITYIPLCPGAYTVTIKY   83 (100)
T ss_dssp             CSCCEEEEEECTTSCBCEEEEEECSSSEEEEEEECCSSEEEEEEEEE
T ss_pred             CCceEEEEEECCCCCEeEEEEEeCCCCEEEEEEEeCCCeeEEEEEEE
Confidence            34468889999988644332 34556655  5778899999988753

>4g9s_B Inhibitor of G-type lysozyme, goose-type lysozyme; hydrolase inhibitor, hydrolase-hydrolase inhibitor; HET: FLC; 0.95A {Escherichia coli} PDB: 4dy3_A* 4dxz_A* 4dy5_A

Probab=87.92  E-value=2.8  Score=30.11  Aligned_cols=90  Identities=14%  Similarity=0.108  Sum_probs=61.6

Q ss_pred             ceeEEEEEcCCCcceEEEEcCCCCEEEEEEEEEeCCCcceEEEEeCCCCCEEecc---eeeccceEEEeCCCeeeEEEEE
Q psy5395          46 AMDYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPY---EWKKNAEYQDTPPHGGYYSVCI  122 (237)
Q Consensus        46 ~~~l~f~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~~~~I~v~I~dP~g~~v~~~---~~~~~g~f~f~~~~~G~Y~~Cf  122 (237)
                      ...+.=.|.+++...+...+.+|+.+.+...  +   ....+.|..|.+......   .......++.+.|.+|+|.+=+
T Consensus        15 ~a~v~G~I~g~~~~~Y~~~a~aGQ~l~v~l~--s---~~~~~~i~~pg~~~~~~~~~~~~~~~~~~~~~LP~sG~Y~I~V   89 (111)
T 4g9s_B           15 SAQYSGEIKGYDYDTYTFYAKKGQKVHVSIS--N---EGADTYLFGPGIDDSVDLSRYSPELDSHGQYSLPASGKYELRV   89 (111)
T ss_dssp             EEEEEEEEETTCCEEEEEEECTTCEEEEEES--C---TTCEEEEECTTCSSCEECSTTCTTCCTTSCEECSSSEEEEEEE
T ss_pred             CeEEEEEEeCCCceEEEEEecCCCEEEEEEe--c---CCccEEEECCCCccccccccccccCCceEEEEecCCccEEEEE
Confidence            4556778899999999999999999998753  2   234577888977543321   1223445778899999999999


Q ss_pred             EcCCCC-CCCeEEEEEEEE
Q psy5395         123 DNQFSR-NAGKLVNMYLTV  140 (237)
Q Consensus       123 ~N~~s~-~~~k~V~f~i~v  140 (237)
                      ....+. ...+...+.+.|
T Consensus        90 ~~~r~~ar~~~~~~Y~L~v  108 (111)
T 4g9s_B           90 LQTRNDARKNKTKKYNVDI  108 (111)
T ss_dssp             ECCHHHHHTTCEEEEEEEE
T ss_pred             EeccchhccCCCcCEEEEE
Confidence            754321 124566666655

>2d7p_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10 PDB: 2eeb_A

Probab=86.45  E-value=2.6  Score=30.44  Aligned_cols=44  Identities=18%  Similarity=0.224  Sum_probs=31.7

Q ss_pred             cceEEEEeCCCCCEEecc-eeeccceE--EEeCCCeeeEEEEEEcCC
Q psy5395          83 GMAGFAVRNPNGQIVHPY-EWKKNAEY--QDTPPHGGYYSVCIDNQF  126 (237)
Q Consensus        83 ~~I~v~I~dP~g~~v~~~-~~~~~g~f--~f~~~~~G~Y~~Cf~N~~  126 (237)
                      .++.+.|.+|+|..+... .....|.|  +|+.++.|.|.+.+.-..
T Consensus        41 g~l~v~V~~P~g~~~~~~v~d~~~gty~v~ytP~~~G~h~v~V~~~g   87 (112)
T 2d7p_A           41 GVIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNG   87 (112)
T ss_dssp             SCEEEEEECSSSCBCCCEECSCBTTEEEEEECCSSCEEEEEEEEESS
T ss_pred             CCEEEEEECCCCCeeeeEEEeCCCCeEEEEEEcCCCEeEEEEEEECC
Confidence            468889999999754432 22455655  688999999999887444

>2dia_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=85.02  E-value=2.5  Score=30.34  Aligned_cols=46  Identities=20%  Similarity=0.344  Sum_probs=32.5

Q ss_pred             CCcceEEEEeCCCCCEEecc-eeeccceE--EEeCCCeeeEEEEEEcCC
Q psy5395          81 GDGMAGFAVRNPNGQIVHPY-EWKKNAEY--QDTPPHGGYYSVCIDNQF  126 (237)
Q Consensus        81 ~~~~I~v~I~dP~g~~v~~~-~~~~~g~f--~f~~~~~G~Y~~Cf~N~~  126 (237)
                      +...+.+.|.+|+|..+... .+..+|.|  +|+.+..|.|.+.+.-..
T Consensus        40 G~~~l~v~i~~~~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g   88 (113)
T 2dia_A           40 GPGALGLEAVSDSGTKAEVSIQNNKDGTYAVTYVPLTAGMYTLTMKYGG   88 (113)
T ss_dssp             CSCCEEEEEEETTTEECEEEEEECTTSEEEEEEECSSCEEEEEEEEETT
T ss_pred             CCccEEEEEECCCCCEeeEEEEECCCCEEEEEEEeCCCccEEEEEEECC
Confidence            44568888888887544332 34566765  578899999999997543

>2k9u_A Gamma filamin; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}

Probab=84.64  E-value=7.6  Score=28.01  Aligned_cols=45  Identities=24%  Similarity=0.246  Sum_probs=31.5

Q ss_pred             CCcceEEEEeCCCCCEEecceeeccceE--EEeCCCeeeEEEEEEcCC
Q psy5395          81 GDGMAGFAVRNPNGQIVHPYEWKKNAEY--QDTPPHGGYYSVCIDNQF  126 (237)
Q Consensus        81 ~~~~I~v~I~dP~g~~v~~~~~~~~g~f--~f~~~~~G~Y~~Cf~N~~  126 (237)
                      +...+.+.|.+|.+-.+.- .+..+|.|  +|+.+..|.|.+.+.-..
T Consensus        47 g~~~l~v~v~~p~~~~~~v-~d~~dGty~v~Y~p~~~G~y~I~V~~~g   93 (119)
T 2k9u_A           47 GAGGLSIAVEGPSKAEIAF-EDRKDGSCGVSYVVQEPGDYEVSIKFND   93 (119)
T ss_dssp             CSEEEEEEEESSSCCEEEE-ECCSSSEEEEEEECCSSEEEEEEEEETS
T ss_pred             CCCcEEEEEeCCCCCeEEE-EECCCCEEEEEEEECCCceEEEEEEECC
Confidence            4456888889998843322 34556655  688999999999997443

>2ee6_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.26  E-value=1.9  Score=30.61  Aligned_cols=43  Identities=23%  Similarity=0.324  Sum_probs=30.9

Q ss_pred             CcceEEEEeCCCCCEEecceeeccce--EEEeCCCeeeEEEEEEcC
Q psy5395          82 DGMAGFAVRNPNGQIVHPYEWKKNAE--YQDTPPHGGYYSVCIDNQ  125 (237)
Q Consensus        82 ~~~I~v~I~dP~g~~v~~~~~~~~g~--f~f~~~~~G~Y~~Cf~N~  125 (237)
                      ...+.+.|.+|.+..+ +-.+..+|.  .+|+.+..|.|.+.+.-.
T Consensus        41 ~~~l~v~v~~p~~~~v-~v~d~~dGty~v~Y~p~~~G~y~I~V~~~   85 (105)
T 2ee6_A           41 AGGLSIAVEGPSKAEI-TFDDHKNGSCGVSYIAQEPGNYEVSIKFN   85 (105)
T ss_dssp             CCCEEEEEESSSCEEE-EECCCCSSCCCEEEEESSCEEEEEEEEET
T ss_pred             CCcEEEEEECCCCCEE-EEEECCCCEEEEEEEECCCceEEEEEEEC
Confidence            3467888899988655 223455564  578889999999999744

>2w0p_A Filamin-A; alternative splicing, cytoskeleton/complex, phosphoprotein, disease mutation, immunoglobulin like, zinc, complex; 1.90A {Homo sapiens} SCOP: b.1.18.10 PDB: 2brq_A* 2jf1_A 3isw_A

Probab=84.24  E-value=4  Score=28.16  Aligned_cols=43  Identities=21%  Similarity=0.237  Sum_probs=30.0

Q ss_pred             CcceEEEEeCCCCCEEecceeeccceE--EEeCCCeeeEEEEEEcC
Q psy5395          82 DGMAGFAVRNPNGQIVHPYEWKKNAEY--QDTPPHGGYYSVCIDNQ  125 (237)
Q Consensus        82 ~~~I~v~I~dP~g~~v~~~~~~~~g~f--~f~~~~~G~Y~~Cf~N~  125 (237)
                      ...+.+.|.+|.+..+.- .+..+|.|  +|+.+..|.|.+.+.-.
T Consensus        33 ~~~~~v~v~gp~~~~~~v-~d~~dGty~v~Y~p~~~G~y~I~V~~~   77 (94)
T 2w0p_A           33 AGGLAIAVEGPSKAEISF-EDRKDGSCGVAYVVQEPGDYEVSVKFN   77 (94)
T ss_dssp             SCCEEEEEEESSCCEEEE-EECTTSCEEEEEECSSCEEEEEEEEET
T ss_pred             CCcEEEEEECCCCCeEEE-EECCCCEEEEEEEECCCceEEEEEEEC
Confidence            345677888888854432 33556655  68889999999999744

>2dic_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=82.85  E-value=2.8  Score=29.71  Aligned_cols=43  Identities=23%  Similarity=0.266  Sum_probs=30.1

Q ss_pred             CcceEEEEeCCCCCEEecceeeccceE--EEeCCCeeeEEEEEEcC
Q psy5395          82 DGMAGFAVRNPNGQIVHPYEWKKNAEY--QDTPPHGGYYSVCIDNQ  125 (237)
Q Consensus        82 ~~~I~v~I~dP~g~~v~~~~~~~~g~f--~f~~~~~G~Y~~Cf~N~  125 (237)
                      ...+.+.|.+|.+..+.- .+..+|.|  +|+.+..|.|.+.+.-.
T Consensus        41 ~g~l~v~v~gp~~~~~~v-~d~~dGty~v~Y~p~~~G~y~I~V~~~   85 (105)
T 2dic_A           41 IGGLGITVEGPSESKINC-RDNKDGSCSAEYIPFAPGDYDVNITYG   85 (105)
T ss_dssp             SSCEEEEEESSSCCCCEE-EECSSSCEEEEECCSSCEEEEEEEEET
T ss_pred             CCceEEEEECCCCCeEEE-EECCCCeEEEEEEeCCCeEEEEEEEEC
Confidence            345778888998754432 23556654  68889999999999744

>2eea_A Filamin-B; beta-sandwich, immunoglobulin-like fold, interaction with GP1BA, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.56  E-value=7.2  Score=27.93  Aligned_cols=43  Identities=19%  Similarity=0.285  Sum_probs=31.3

Q ss_pred             CcceEEEEeCCCCCEEecceeeccceE--EEeCCCeeeEEEEEEcC
Q psy5395          82 DGMAGFAVRNPNGQIVHPYEWKKNAEY--QDTPPHGGYYSVCIDNQ  125 (237)
Q Consensus        82 ~~~I~v~I~dP~g~~v~~~~~~~~g~f--~f~~~~~G~Y~~Cf~N~  125 (237)
                      ...+.+.|.+|.+..+. -.+..+|.|  +|+.+..|.|.+.+.=.
T Consensus        51 ~~~l~v~v~~p~~~~~~-v~d~~dGty~v~Y~p~~~G~y~I~V~~~   95 (115)
T 2eea_A           51 EGGLDLAIEGPSKAEIS-CIDNKDGTCTVTYLPTLPGDYSILVKYN   95 (115)
T ss_dssp             SSCEEEEEESSSCCEEC-CBCCSSSEEEEEEECSSCSCEEEEEEES
T ss_pred             CCceEEEEECCCCceEE-EEECCCCEEEEEEEeCCCeeEEEEEEEC
Confidence            45688899999985443 234566754  68889999999998743

>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A

Probab=82.51  E-value=2.5  Score=36.84  Aligned_cols=74  Identities=18%  Similarity=0.251  Sum_probs=46.7

Q ss_pred             EEcCCCcceEEEEcC-----CCCEEEEEEEEEeCCCcceEEEEeCCCCCEEecc---eeeccceE--EEeCCCeeeEEEE
Q psy5395          52 HIDPGKEDCFFQYVN-----PGATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPY---EWKKNAEY--QDTPPHGGYYSVC  121 (237)
Q Consensus        52 ~l~~g~~~Cf~e~v~-----~~~~i~~~y~v~~~~~~~I~v~I~dP~g~~v~~~---~~~~~g~f--~f~~~~~G~Y~~C  121 (237)
                      ..+|.+-+|+.--+.     .|....+.....+.|..++.+.|.+|+|..+...   ....+|.|  +|++++.|.|.+-
T Consensus       251 k~~pskv~a~GpGle~~g~~vg~p~~F~Vdt~~AG~g~l~v~V~~P~G~~~~~~v~~~~~~~gty~v~y~P~~~G~~~I~  330 (347)
T 4b7l_A          251 KLNPKKARAYGRGIEPTGNMVKQPAKFTVDTISAGQGDVMVFVEDPEGNKEEAQVTPDSDKNKTYSVEYLPKVTGLHKVT  330 (347)
T ss_dssp             SCCGGGCEEESGGGSSSCCCTTSCEEEEEECTTTCSCCEEEEEECTTSCEEECEEEESSTTCSEEEEEECCCSSSEEEEE
T ss_pred             cccccceeEEeccccccCceeCCEEEEEEEeCCCCCCceEEEEECCCCCeecCEEEEEcCCCCEEEEEEEECCCEeEEEE
Confidence            345555566554443     2444444434444566789999999999765432   22345655  6889999999988


Q ss_pred             EEcC
Q psy5395         122 IDNQ  125 (237)
Q Consensus       122 f~N~  125 (237)
                      +.-.
T Consensus       331 V~~~  334 (347)
T 4b7l_A          331 VLFA  334 (347)
T ss_dssp             EEET
T ss_pred             EEEC
Confidence            8644

>2bp3_A Filamin A; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens} SCOP: b.1.18.10 PDB: 2aav_A

Probab=81.98  E-value=4  Score=28.31  Aligned_cols=42  Identities=17%  Similarity=0.245  Sum_probs=29.2

Q ss_pred             cceEEEEeCCCCCEEecceeeccceE--EEeCCCeeeEEEEEEcC
Q psy5395          83 GMAGFAVRNPNGQIVHPYEWKKNAEY--QDTPPHGGYYSVCIDNQ  125 (237)
Q Consensus        83 ~~I~v~I~dP~g~~v~~~~~~~~g~f--~f~~~~~G~Y~~Cf~N~  125 (237)
                      ..+.+.|.+|.+..+.- .+..+|.|  +|+.+..|.|.+.+.=.
T Consensus        37 ~~l~v~v~~p~~~~~~v-~d~~dGty~v~Y~p~~~G~y~i~V~~~   80 (97)
T 2bp3_A           37 GGLSLAIEGPSKAEISC-TDNQDGTCSVSYLPVLPGDYSILVKYN   80 (97)
T ss_dssp             EEEEEEEEESSCCEEEE-EECSSSEEEEEEECSSCEEEEEEEEET
T ss_pred             CcEEEEEECCCCCEEEE-EECCCCEEEEEEEeCCCCcEEEEEEEC
Confidence            45777888888754432 33556654  67889999999998743

>1v05_A Filamin C; actin-binding protein, immunoglobulin; 1.43A {Homo sapiens} SCOP: b.1.18.10 PDB: 2eed_A

Probab=80.45  E-value=5.4  Score=27.54  Aligned_cols=45  Identities=18%  Similarity=0.118  Sum_probs=30.6

Q ss_pred             CcceEEEEeCCCCCEEec-ceeeccceE--EEeCCCeeeEEEEEEcCC
Q psy5395          82 DGMAGFAVRNPNGQIVHP-YEWKKNAEY--QDTPPHGGYYSVCIDNQF  126 (237)
Q Consensus        82 ~~~I~v~I~dP~g~~v~~-~~~~~~g~f--~f~~~~~G~Y~~Cf~N~~  126 (237)
                      ...+.+.|.+|+|..+.. -.+..+|.|  +|+.++.|.|.+.+.-..
T Consensus        36 ~~~l~v~v~~p~~~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g   83 (96)
T 1v05_A           36 TNMMMVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKEKGDYILIVKWGD   83 (96)
T ss_dssp             SCCEEEEEECSSSCCSEEEEEECSTTEEEEEEECSSCEEEEEEEEETT
T ss_pred             CCcEEEEEECCCCCeeEEEEEeCCCCEEEEEEEeCCCEEEEEEEEECC
Confidence            446788889998853211 133556665  577899999999887443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	237
d1olma2	119	b.132.1.1 (A:275-393) Supernatant protein factor (	0.001

>d1olma2 b.132.1.1 (A:275-393) Supernatant protein factor (SPF), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: All beta proteins
fold: Supernatant protein factor (SPF), C-terminal domain
superfamily: Supernatant protein factor (SPF), C-terminal domain
family: Supernatant protein factor (SPF), C-terminal domain
domain: Supernatant protein factor (SPF), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (81), Expect = 0.001
 Identities = 22/108 (20%), Positives = 34/108 (31%), Gaps = 14/108 (12%)

Query: 51  IHIDPGK-EDCFFQYVNPGATFYVNFQVLRGGDGM-------AGFAVRNPNGQIVHPYEW 102
           + I  G      ++ + PG      F       G         G   R      V P + 
Sbjct: 8   VQISRGSSHQVEYEILFPGCVLRWQFMSDGADVGFGIFLKTKMGERQRAGEMTEVLPNQ- 66

Query: 103 KKNAEYQD-----TPPHGGYYSVCIDNQFSRNAGKLVNMYLTVVRYDQ 145
           + N+         T    G Y +  DN +S    K VN  + V+  D+
Sbjct: 67  RYNSHLVPEDGTLTCSDPGIYVLRFDNTYSFIHAKKVNFTVEVLLPDK 114

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	237
d1olma2	119	Supernatant protein factor (SPF), C-terminal domai	98.23
d2d7ma1	102	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	94.91
d2dmba1	111	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	93.89
d2d7na1	80	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	93.32
d2w0pa1	92	Filamin a {Human (Homo sapiens) [TaxId: 9606]}	92.14
d2dj4a1	101	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	91.95
d2di8a1	98	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	91.72
d1v05a_	96	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	91.16
d2bp3a1	92	Filamin a {Human (Homo sapiens) [TaxId: 9606]}	91.14
d2j3sa2	88	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	91.14
d2d7pa1	99	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	91.11
d2dmca1	103	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	90.97
d2diaa1	100	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	90.28
d2nqca1	97	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	90.21
d2dica1	98	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	89.65
d2di9a1	118	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	87.41
d2diba1	115	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	85.34
d1qfha1	104	F-actin cross-linking gelation factor (ABP-120) re	80.92

>d1olma2 b.132.1.1 (A:275-393) Supernatant protein factor (SPF), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Supernatant protein factor (SPF), C-terminal domain
superfamily: Supernatant protein factor (SPF), C-terminal domain
family: Supernatant protein factor (SPF), C-terminal domain
domain: Supernatant protein factor (SPF), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=1.7e-05  Score=57.63  Aligned_cols=88  Identities=23%  Similarity=0.266  Sum_probs=63.0

Q ss_pred             EEEEcCCCcceEEEEcC-CCCEEEEEEEEEeCCCcceEEEEeC--CCC--------CEEeccee------eccceEEEeC
Q psy5395          50 KIHIDPGKEDCFFQYVN-PGATFYVNFQVLRGGDGMAGFAVRN--PNG--------QIVHPYEW------KKNAEYQDTP  112 (237)
Q Consensus        50 ~f~l~~g~~~Cf~e~v~-~~~~i~~~y~v~~~~~~~I~v~I~d--P~g--------~~v~~~~~------~~~g~f~f~~  112 (237)
                      ++.|.+|+.....-.+. +|+.+...|.+.   ..||.|.|.-  ..|        ..+.....      ...|  +|.+
T Consensus         7 tvtV~~G~~~~v~~~v~~~Gs~l~WeF~t~---~~DI~Fgv~~~~~~~~~~~~~~~~~v~p~~r~~s~~~p~~g--~~~~   81 (119)
T d1olma2           7 SVQISRGSSHQVEYEILFPGCVLRWQFMSD---GADVGFGIFLKTKMGERQRAGEMTEVLPNQRYNSHLVPEDG--TLTC   81 (119)
T ss_dssp             EEEECTTCEEEEEEEECSTTCEEEEEEEES---SSCEEEEEEEC----CCCCGGGSEEEEEEEEECTTTSCEEE--EEEC
T ss_pred             EEEECCCCEEEEEEEEeCCCcEEEEEEEeC---CccEEEEEEEecccCCccccCceEEEeeeEEecCCceeEcc--EEEc
Confidence            56788888877777775 799999999874   2466666642  111        12333221      1234  5778


Q ss_pred             CCeeeEEEEEEcCCCCCCCeEEEEEEEEEe
Q psy5395         113 PHGGYYSVCIDNQFSRNAGKLVNMYLTVVR  142 (237)
Q Consensus       113 ~~~G~Y~~Cf~N~~s~~~~k~V~f~i~v~~  142 (237)
                      ++.|.|.+||+|+.|.+..|.|.+.+++..
T Consensus        82 ~~~G~Y~l~FDNs~S~~~sK~l~Y~i~v~~  111 (119)
T d1olma2          82 SDPGIYVLRFDNTYSFIHAKKVNFTVEVLL  111 (119)
T ss_dssp             CSCEEEEEEEECTTCCCCSEEEEEEEEEEC
T ss_pred             CCCEEEEEEEeCCcceEEeeEEEEEEEEEC
Confidence            999999999999999888999999999864

>d2d7ma1 b.1.18.10 (A:8-109) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.91  E-value=0.067  Score=36.53  Aligned_cols=48  Identities=19%  Similarity=0.365  Sum_probs=35.0

Q ss_pred             eCCCcceEEEEeCCCCCEEecc-eeeccceE--EEeCCCeeeEEEEEEcCC
Q psy5395          79 RGGDGMAGFAVRNPNGQIVHPY-EWKKNAEY--QDTPPHGGYYSVCIDNQF  126 (237)
Q Consensus        79 ~~~~~~I~v~I~dP~g~~v~~~-~~~~~g~f--~f~~~~~G~Y~~Cf~N~~  126 (237)
                      +.+..++.+.|.+|+|+.+... ....+|.|  +|++++.|.|.+.+.-..
T Consensus        33 ~aG~g~l~v~i~~p~g~~~~~~v~~~~dg~y~v~y~P~~~G~h~i~V~~~g   83 (102)
T d2d7ma1          33 DAGEGLLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGG   83 (102)
T ss_dssp             SSCSSCEEEEEECTTSCBCCEEEEECSSSCEEEEECCCSCEEEEEEEEESS
T ss_pred             CCCCCcEEEEEEeCCCCEeeeEEEeCCCcEEEEEEEECCCEeEEEEEEECC
Confidence            3455678999999999755433 23455655  789999999999996543

>d2dmba1 b.1.18.10 (A:8-118) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.89  E-value=0.14  Score=35.41  Aligned_cols=49  Identities=18%  Similarity=0.230  Sum_probs=36.0

Q ss_pred             eCCCcceEEEEeCCCCCEEecc-eeeccceE--EEeCCCeeeEEEEEEcCCC
Q psy5395          79 RGGDGMAGFAVRNPNGQIVHPY-EWKKNAEY--QDTPPHGGYYSVCIDNQFS  127 (237)
Q Consensus        79 ~~~~~~I~v~I~dP~g~~v~~~-~~~~~g~f--~f~~~~~G~Y~~Cf~N~~s  127 (237)
                      +.+...+.+.|.+|+|+.+.-. ....+|.|  +|+..+.|.|++.+.-...
T Consensus        32 ~ag~g~l~v~v~~p~g~~~~~~v~d~~~G~y~v~f~P~~~G~h~i~V~~~g~   83 (111)
T d2dmba1          32 TAGKGKVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPGTYVIYVRFGGV   83 (111)
T ss_dssp             SSCSCCEEEEEECTTSCBCCCEEEECTTSCEEEEEECSSCEEEEEEEEESSC
T ss_pred             CCCCCcEEEEEEECCCCEEEeEEEECCCCEEEEEEEECCCCCEEEEEEECCE
Confidence            3445678999999999866543 23556655  6889999999999975543

>d2d7na1 b.1.18.10 (A:8-87) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.32  E-value=0.28  Score=31.80  Aligned_cols=47  Identities=21%  Similarity=0.258  Sum_probs=35.0

Q ss_pred             CCcceEEEEeCCCCCEEecc-eeeccceE--EEeCCCeeeEEEEEEcCCC
Q psy5395          81 GDGMAGFAVRNPNGQIVHPY-EWKKNAEY--QDTPPHGGYYSVCIDNQFS  127 (237)
Q Consensus        81 ~~~~I~v~I~dP~g~~v~~~-~~~~~g~f--~f~~~~~G~Y~~Cf~N~~s  127 (237)
                      +..++.+.|++|+|..+... ....+|.|  +|+..+.|.|.+=+.....
T Consensus        13 ~~g~l~~~v~~P~G~~~~~~v~~~~dg~y~v~y~P~~~G~h~v~V~~~g~   62 (80)
T d2d7na1          13 QKGELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDGN   62 (80)
T ss_dssp             SSSCEEEEEECTTSCEECCEEEECSSSCEEEEECCSSCEEEEEEEEESSS
T ss_pred             CCCcEEEEEECCCCCEeceEEEECCCCEEEEEEEECCcEEEEEEEEECCE
Confidence            45678999999999876543 23456655  6889999999998865543

>d2w0pa1 b.1.18.10 (A:2237-2328) Filamin a {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.14  E-value=0.18  Score=33.65  Aligned_cols=44  Identities=20%  Similarity=0.234  Sum_probs=33.0

Q ss_pred             CCcceEEEEeCCCCCEEecceeeccceE--EEeCCCeeeEEEEEEcC
Q psy5395          81 GDGMAGFAVRNPNGQIVHPYEWKKNAEY--QDTPPHGGYYSVCIDNQ  125 (237)
Q Consensus        81 ~~~~I~v~I~dP~g~~v~~~~~~~~g~f--~f~~~~~G~Y~~Cf~N~  125 (237)
                      +..++.+.|.+|++..+.-. +..+|.|  +|++++.|.|.+.+.-.
T Consensus        31 g~g~l~v~v~gp~~~~v~v~-d~~dg~y~v~ytP~~~G~y~i~V~~~   76 (92)
T d2w0pa1          31 GAGGLAIAVEGPSKAEISFE-DRKDGSCGVAYVVQEPGDYEVSVKFN   76 (92)
T ss_dssp             CSCCEEEEEEESSCCEEEEE-ECTTSCEEEEEECSSCEEEEEEEEET
T ss_pred             CCCceEEEEEeCCceEEEEE-ECCCCEEEEEEEECCCceEEEEEEEC
Confidence            44568888999998766443 3556665  79999999999998644

>d2dj4a1 b.1.18.10 (A:8-108) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.95  E-value=0.26  Score=33.23  Aligned_cols=45  Identities=20%  Similarity=0.195  Sum_probs=33.7

Q ss_pred             CCcceEEEEeCCCCCEEecc-eeeccceE--EEeCCCeeeEEEEEEcC
Q psy5395          81 GDGMAGFAVRNPNGQIVHPY-EWKKNAEY--QDTPPHGGYYSVCIDNQ  125 (237)
Q Consensus        81 ~~~~I~v~I~dP~g~~v~~~-~~~~~g~f--~f~~~~~G~Y~~Cf~N~  125 (237)
                      +...+++.|.+|+|..+.-. ....+|.|  +|++++.|.|++-+.-.
T Consensus        34 G~g~l~v~i~~p~g~~~~~~v~~~~dG~y~v~y~P~~~G~y~i~V~~~   81 (101)
T d2dj4a1          34 GLAPLEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVKYA   81 (101)
T ss_dssp             CSCCEEEEEECSSSCEECCCCEECSSSEEEEEECCSSCEEEEEEEEES
T ss_pred             CCCCEEEEEEECCCCEeEEEEEeCCCCEEEEEEEeCCCeeEEEEEEEC
Confidence            45578999999999876543 34556665  68899999999988533

>d2di8a1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.72  E-value=0.14  Score=34.62  Aligned_cols=45  Identities=20%  Similarity=0.197  Sum_probs=32.9

Q ss_pred             CCCcceEEEEeCCCCCEEecceeeccceE--EEeCCCeeeEEEEEEcC
Q psy5395          80 GGDGMAGFAVRNPNGQIVHPYEWKKNAEY--QDTPPHGGYYSVCIDNQ  125 (237)
Q Consensus        80 ~~~~~I~v~I~dP~g~~v~~~~~~~~g~f--~f~~~~~G~Y~~Cf~N~  125 (237)
                      .+..++.+.|.+|++..+.-. ...+|.|  +|++.+.|.|.+.+.=.
T Consensus        32 aG~g~l~v~i~gp~~~~v~v~-~~~dg~y~v~y~P~~~G~y~i~V~~~   78 (98)
T d2di8a1          32 AGYGGISLAVEGPSKVDIQTE-DLEDGTCKVSYFPTVPGVYIVSTKFA   78 (98)
T ss_dssp             TCBCCEEEEEESSSCCCEECC-BCTTSCEEEEECCCSCSEEEEEEEES
T ss_pred             CCCCceEEEEEeCCCceEEEE-ECCCCEEEEEEEECCCceEEEEEEEC
Confidence            345678899999988765443 3455665  58899999999998533

>d1v05a_ b.1.18.10 (A:) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.16  E-value=0.26  Score=32.90  Aligned_cols=45  Identities=18%  Similarity=0.118  Sum_probs=32.6

Q ss_pred             CcceEEEEeCCCCCEEec-ceeeccceE--EEeCCCeeeEEEEEEcCC
Q psy5395          82 DGMAGFAVRNPNGQIVHP-YEWKKNAEY--QDTPPHGGYYSVCIDNQF  126 (237)
Q Consensus        82 ~~~I~v~I~dP~g~~v~~-~~~~~~g~f--~f~~~~~G~Y~~Cf~N~~  126 (237)
                      ..++++.|.+|+|..+-- -....+|.|  +|+.++.|.|++.+.-..
T Consensus        36 ~g~l~v~v~~p~g~~v~~~v~~~~~g~y~v~y~P~~~G~~~v~V~~~g   83 (96)
T d1v05a_          36 TNMMMVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKEKGDYILIVKWGD   83 (96)
T ss_dssp             SCCEEEEEECSSSCCSEEEEEECSTTEEEEEEECSSCEEEEEEEEETT
T ss_pred             CCceEEEEEECCCCeeeeEEEECCCCEEEEEEEeCCCccEEEEEEECC
Confidence            346888999999865432 234566655  688999999999996543

>d2bp3a1 b.1.18.10 (A:1863-1954) Filamin a {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.14  E-value=0.29  Score=32.41  Aligned_cols=42  Identities=19%  Similarity=0.373  Sum_probs=32.1

Q ss_pred             CCcceEEEEeCCCCCEEecceeeccceE--EEeCCCeeeEEEEEE
Q psy5395          81 GDGMAGFAVRNPNGQIVHPYEWKKNAEY--QDTPPHGGYYSVCID  123 (237)
Q Consensus        81 ~~~~I~v~I~dP~g~~v~~~~~~~~g~f--~f~~~~~G~Y~~Cf~  123 (237)
                      +..++.+.|.+|.+..+.-.+ ..+|.|  +|++++.|.|.+-+.
T Consensus        32 G~g~l~v~v~~p~~~~~~v~~-~~dg~y~v~ytP~~~G~h~i~V~   75 (92)
T d2bp3a1          32 GEGGLSLAIEGPSKAEISCTD-NQDGTCSVSYLPVLPGDYSILVK   75 (92)
T ss_dssp             CSEEEEEEEEESSCCEEEEEE-CSSSEEEEEEECSSCEEEEEEEE
T ss_pred             CCCceEEEEEeCCCceEEEEE-CCCCEEEEEEEECCCccEEEEEE
Confidence            455788899999987665443 456766  599999999999774

>d2j3sa2 b.1.18.10 (A:2149-2236) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.14  E-value=0.079  Score=35.18  Aligned_cols=53  Identities=15%  Similarity=0.115  Sum_probs=30.6

Q ss_pred             EEEEEeCCCcceEEEEeCCCCCEEecc-eeeccceE--EEeCCCeeeEEEEEEcCC
Q psy5395          74 NFQVLRGGDGMAGFAVRNPNGQIVHPY-EWKKNAEY--QDTPPHGGYYSVCIDNQF  126 (237)
Q Consensus        74 ~y~v~~~~~~~I~v~I~dP~g~~v~~~-~~~~~g~f--~f~~~~~G~Y~~Cf~N~~  126 (237)
                      +..+...+..++.+.|.+|+|+.+... ....+|.|  +|+..+.|.|.+-+.-..
T Consensus        15 ~v~~~~a~~g~l~v~v~~P~g~~~~~~v~~~~~g~y~v~y~P~~~G~h~i~V~~~g   70 (88)
T d2j3sa2          15 SLKIPEISIQDMTAQVTSPSGKTHEAEIVEGENHTYCIRFVPAEMGTHTVSVKYKG   70 (88)
T ss_dssp             --------CCCEEEEEECTTCCEEEEBC-------CCCBCCCCSCEEEEEEEEETT
T ss_pred             EEECCCCCCCcEEEEEECCCCCEEeeEEEECCCCEEEEEEEECCceeEEEEEEECC
Confidence            333444455679999999999877543 23455665  588999999999886443

>d2d7pa1 b.1.18.10 (A:8-106) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.11  E-value=0.49  Score=31.71  Aligned_cols=47  Identities=17%  Similarity=0.204  Sum_probs=34.2

Q ss_pred             CCcceEEEEeCCCCCEEecce-eeccceE--EEeCCCeeeEEEEEEcCCC
Q psy5395          81 GDGMAGFAVRNPNGQIVHPYE-WKKNAEY--QDTPPHGGYYSVCIDNQFS  127 (237)
Q Consensus        81 ~~~~I~v~I~dP~g~~v~~~~-~~~~g~f--~f~~~~~G~Y~~Cf~N~~s  127 (237)
                      +...+++.|.+|+|..+--.- ....|.|  +|++.+.|.|.+.+.-...
T Consensus        32 ~~g~l~v~v~~p~g~~v~~~v~~~~dg~y~v~y~P~~~G~~~i~V~~~g~   81 (99)
T d2d7pa1          32 ARGVIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGA   81 (99)
T ss_dssp             CCSCEEEEEECSSSCBCCCEECSCBTTEEEEEECCSSCEEEEEEEEESSC
T ss_pred             CCCeEEEEEEcCCCCEeeeEEEeCCCCEEEEEEEECCCCcEEEEEEECCE
Confidence            345689999999997655432 3455665  5889999999999876543

>d2dmca1 b.1.18.10 (A:8-110) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.97  E-value=0.11  Score=35.33  Aligned_cols=56  Identities=14%  Similarity=0.085  Sum_probs=37.0

Q ss_pred             CCEEEEEEEEEeCCCcceEEEEeCCCCCEEecc-eeeccceE--EEeCCCeeeEEEEEE
Q psy5395          68 GATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPY-EWKKNAEY--QDTPPHGGYYSVCID  123 (237)
Q Consensus        68 ~~~i~~~y~v~~~~~~~I~v~I~dP~g~~v~~~-~~~~~g~f--~f~~~~~G~Y~~Cf~  123 (237)
                      |....+.....+.+..++.+.|.+|+|+.+-.. ....+|.|  +|+.++.|.|.+=+.
T Consensus        23 g~~~~f~Vd~~~ag~g~l~v~v~~P~g~~v~~~v~~~~dg~y~v~f~P~~~G~h~i~V~   81 (103)
T d2dmca1          23 GSAADFLLDISETDLSSLTASIKAPSGRDEPCLLKRLPNNHIGISFIPREVGEHLVSIK   81 (103)
T ss_dssp             TSCEEEECCCSCCCSTTBCCEEECTTSCBCCEEEEEETTTEEEEEECCCSCEEEEEECB
T ss_pred             CCcEEEEEECCCCCCCcEEEEEECCCCCEeccEEEECCCCEEEEEEEeCCceeEEEEEE
Confidence            444333333333445678899999999865432 34566766  588999999998664

>d2diaa1 b.1.18.10 (A:8-107) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.28  E-value=0.38  Score=32.20  Aligned_cols=48  Identities=19%  Similarity=0.336  Sum_probs=34.3

Q ss_pred             eCCCcceEEEEeCCCCCEEecc-eeeccceE--EEeCCCeeeEEEEEEcCC
Q psy5395          79 RGGDGMAGFAVRNPNGQIVHPY-EWKKNAEY--QDTPPHGGYYSVCIDNQF  126 (237)
Q Consensus        79 ~~~~~~I~v~I~dP~g~~v~~~-~~~~~g~f--~f~~~~~G~Y~~Cf~N~~  126 (237)
                      +.+..++.+.|.+|+|+.+... ....+|.|  +|+..+.|.|++.+.-..
T Consensus        31 ~ag~~~l~v~i~~~~g~~~~~~v~~~~dg~y~v~y~P~~~G~h~i~V~~~g   81 (100)
T d2diaa1          31 EAGPGALGLEAVSDSGTKAEVSIQNNKDGTYAVTYVPLTAGMYTLTMKYGG   81 (100)
T ss_dssp             SCCSCCEEEEEEETTTEECEEEEEECTTSEEEEEEECSSCEEEEEEEEETT
T ss_pred             CCCCCcEEEEEEeCCCCEeeEEEEECCCCEEEEEEEeCcCccEEEEEEECC
Confidence            3445678899999998755432 33555654  688999999999997543

>d2nqca1 b.1.18.10 (A:2482-2578) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.21  E-value=0.37  Score=32.18  Aligned_cols=43  Identities=21%  Similarity=0.301  Sum_probs=31.6

Q ss_pred             CCcceEEEEeCCCCCEEecceeeccceEEEeCCCeeeEEEEEE
Q psy5395          81 GDGMAGFAVRNPNGQIVHPYEWKKNAEYQDTPPHGGYYSVCID  123 (237)
Q Consensus        81 ~~~~I~v~I~dP~g~~v~~~~~~~~g~f~f~~~~~G~Y~~Cf~  123 (237)
                      +..++.+.|.+|++..+.-......-..+|++.+.|.|.+.+.
T Consensus        33 g~~~l~v~v~~p~~~~~~~~~~~~~y~v~y~P~~~G~h~i~V~   75 (97)
T d2nqca1          33 GSGALSVTIDGPSKVQLDCRECPEGHVVTYTPMAPGNYLIAIK   75 (97)
T ss_dssp             CSCCEEEEEESSSCCEEEEEEETTEEEEEEECCSCEEEEEEEE
T ss_pred             CCCceEEEEEcCCCceEEEEECCCcEEEEEEeCCCEeEEEEEE
Confidence            4457888999999876655443222345799999999999995

>d2dica1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.65  E-value=0.34  Score=32.45  Aligned_cols=45  Identities=24%  Similarity=0.248  Sum_probs=32.5

Q ss_pred             CCcceEEEEeCCCCCEEecceeeccceE--EEeCCCeeeEEEEEEcCC
Q psy5395          81 GDGMAGFAVRNPNGQIVHPYEWKKNAEY--QDTPPHGGYYSVCIDNQF  126 (237)
Q Consensus        81 ~~~~I~v~I~dP~g~~v~~~~~~~~g~f--~f~~~~~G~Y~~Cf~N~~  126 (237)
                      +..++.+.|.+|++..+.-. ...+|.|  +|++++.|.|.+.+.-..
T Consensus        33 g~g~l~v~v~~p~~~~~~v~-~~~dg~y~v~y~P~~~G~y~i~V~~~g   79 (98)
T d2dica1          33 GIGGLGITVEGPSESKINCR-DNKDGSCSAEYIPFAPGDYDVNITYGG   79 (98)
T ss_dssp             CSSCEEEEEESSSCCCCEEE-ECSSSCEEEEECCSSCEEEEEEEEETT
T ss_pred             CCCCcEEEEEeCCCcEEEEE-ECCCCEEEEEEEECCCceEEEEEEECC
Confidence            44568889999988655332 3455665  588999999999996443

>d2di9a1 b.1.18.10 (A:8-125) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.41  E-value=1.4  Score=30.19  Aligned_cols=45  Identities=22%  Similarity=0.207  Sum_probs=33.6

Q ss_pred             CCcceEEEEeCCCCCEEecceeeccceE--EEeCCCeeeEEEEEEcCC
Q psy5395          81 GDGMAGFAVRNPNGQIVHPYEWKKNAEY--QDTPPHGGYYSVCIDNQF  126 (237)
Q Consensus        81 ~~~~I~v~I~dP~g~~v~~~~~~~~g~f--~f~~~~~G~Y~~Cf~N~~  126 (237)
                      +..++.+.|.+|++..+.-. ...+|.|  +|+..+.|.|++.+.-..
T Consensus        53 g~g~l~v~i~~p~~~~~~v~-~~~dG~y~v~ytP~~~G~y~i~V~~~g   99 (118)
T d2di9a1          53 GTGGLGLTVEGPCEAKIECS-DNGDGTCSVSYLPTKPGEYFVNILFEE   99 (118)
T ss_dssp             CSSCEEEEECSSSCCEEEEE-ECSSSEEEEEEECSSSSEEEEEEEESS
T ss_pred             CCCccEEEEecCCceEEEEE-ECCCCEEEEEEEeCCcEeEEEEEEECC
Confidence            44568899999998765433 3566665  688999999999997544

>d2diba1 b.1.18.10 (A:8-122) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.34  E-value=0.53  Score=32.36  Aligned_cols=46  Identities=20%  Similarity=0.250  Sum_probs=33.6

Q ss_pred             CCcceEEEEeCCCCCEEecc-eeeccceE--EEeCCCeeeEEEEEEcCC
Q psy5395          81 GDGMAGFAVRNPNGQIVHPY-EWKKNAEY--QDTPPHGGYYSVCIDNQF  126 (237)
Q Consensus        81 ~~~~I~v~I~dP~g~~v~~~-~~~~~g~f--~f~~~~~G~Y~~Cf~N~~  126 (237)
                      +...+++.|.+|+|..+--. ....+|.|  +|+.++.|.|++.+.-..
T Consensus        48 G~~~l~v~v~~p~g~~v~~~v~~~~dG~y~v~y~P~~~G~~~i~V~~~g   96 (115)
T d2diba1          48 GGDHIKAHIANPSGASTECFVTDNADGTYQVEYTPFEKGLHVVEVTYDD   96 (115)
T ss_dssp             CCSCCCEECCCSSSCCCCCEEEECSSSEEEEEECCSSCSEEEEEEBSSS
T ss_pred             CCccEEEEEEeCCCCEeeeEEEECCCCEEEEEEEeCCCEeEEEEEEECC
Confidence            34578899999999765432 33456665  688999999999996443

>d1qfha1 b.1.18.10 (A:646-749) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: F-actin cross-linking gelation factor (ABP-120) repeats
species: Dictyostelium discoideum [TaxId: 44689]

Probab=80.92  E-value=1.4  Score=29.29  Aligned_cols=43  Identities=21%  Similarity=0.353  Sum_probs=32.2

Q ss_pred             cceEEEEeCCCCCEEecc-eeeccceE--EEeCCCeeeEEEEEEcC
Q psy5395          83 GMAGFAVRNPNGQIVHPY-EWKKNAEY--QDTPPHGGYYSVCIDNQ  125 (237)
Q Consensus        83 ~~I~v~I~dP~g~~v~~~-~~~~~g~f--~f~~~~~G~Y~~Cf~N~  125 (237)
                      ..+.+.|.+|+|..+... .+..+|.|  +|++...|.|.+-+.-.
T Consensus        44 ~~~~v~v~~p~g~~~~~~v~d~~dGtY~v~y~p~~~G~~~i~V~~~   89 (104)
T d1qfha1          44 DPFEVAINGPDGLVVDAKVTDNNDGTYGVVYDAPVEGNYNVNVTLR   89 (104)
T ss_dssp             CCEEEEEECGGGCEECCEEEECSSSEEEEEECCCSSEEEEEEEEET
T ss_pred             ceeEEEEECCCCCEEeeEEEECCCCEEEEEEEeCCCEeEEEEEEEC
Confidence            458889999999766543 34556766  68899999999988644