Psyllid ID: psy5396

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-
Protein Sequence
MEPSDIDVKITELKQILAWNKLGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKNQHKDISAVLECINQMPLLSSVLHSQRNSHPSPKLCDLIYLLHWLLVEQSPSLEEVPRDQYDSVLNLVSCEPNVAKPDFIFQVQYSPQSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNFGLQQHFNKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQEDTEENRRRALAQDSLGGEVPHKYYVVENSALVKVKYVLVYTRHKVTASHQVH
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHccccHHHHHHHccccccccccccHHHHHHHHHHHccccEEEcccHHHHHHHHHHccccccccccEEEEHHccccccHHHHHHHHccccccEEEEEcccccccHHHHHHHHHcccccccccccccEEEcccccHHHHccccccccccccccccccEEEEEEEEccccccccccccHHHHHcccccccccccccccEEEEEcccEEEEEEEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccEcccccccccccccccHHHHHHHHHccccHHHHHHHHcccccccccHHHHHHHHHHHHcccccEEEccHHHHHHHHHHcccccccccccEEEEEEEcccHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHcHHHHccccccccccEEEcccccEEEcccccccccccccccccEEEEEEEEEEcccccEEEEcccccccccccccccccccccccEEEEEcccEEEEEEEEEEEccccccccccc
Coil and Loop (DISEMBL)
MEPSDIDVKITELKQILAWNKLGCDIKWSIFVSACQSyrvssclhpfppmfiknqHKDISAVLECInqmpllssvlhsqrnshpspklCDLIYLLHWLLVeqspsleevprdqyDSVLNLvscepnvakpdfifqvqyspqssiesnwSKLSLGRKKILHAFHGSRLENFHSILNFGLQqhfnknslfgQGIYLSSQLGicliyspysagwggscvgsELSIVSLCsivddpdqvkcqeDTEENRRRALAqdslggevphkyyVVENSALVKVKYVLVYTRHkvtashqvh
Flexible Loop (DISEMBL)
MEPSDIDVKITELKQILAWNKLGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKNQHKDISAVLECINQMPLLSSVLHSQRNSHPSPKLCDLIYLLHWLLVEQSPSLEEVPRDQYDSVLNLVSCEPNVAKPDFIFQVQYSPQSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNFGLQQHFNKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQEDTEENRRRalaqdslggevphkYYVVENSALVKVKYVLVYTRHKvtashqvh
Low Complexity Region (SEG)
MEPSDIDVKITELKQILAWNKLGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKNQHKDISAVLECINQMPLLSSVLHSQRNSHPSPKLCDLIYLLHWLLVEQSPSLEEVPRDQYDSVLNLVSCEPNVAKPDFIFQVQYSPQSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNFGLQQHFNKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQEDTEENRRRALAQDSLGGEVPHKYYVVENSALVKVKYVLVYTRHKVTASHQVH
Disordered region (IsUnstruct)
******DVKITELKQILAWNKLGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKNQHKDISAVLECINQMPLLSSVLH*********KLCDLIYLLHWLLVEQSPSLEEVPRDQYDSVLNLVSCEPNVAKPDFIFQVQYSPQSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNFGLQQHFNKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDD************************GEVPHKYYVVENSALVKVKYVLVYTRHKV*******
Disordered Region (DISOPRED)
**********TELKQILAWNKLGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKNQHKDISAVLECINQMPLL****************CDLIYLLHWLLVEQSPSLE********************AKPDF**********************RKKILHAFHGSRLENFHSILNFGLQQHFNKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQV*************************KYYVVENSALVKVKYVLVY************
Disordered Region (DISEMBL)
MEPSDIDVKITELKQILAWNKLGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKNQHKDISAVLECINQMPLLSSV*********SPKLCDLIYLLHWLLVEQSPSLEEVPRDQYDSVLNLVSCEPNVAKPDFIFQVQYSPQSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNFGLQQHFNKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQEDTEENRRRALAQDSLGGEVPHKYYVVENSALVKVKYVLVYTRHK********
Disordered Region (DISPRO)
***SDIDVKITELKQILAWNKLGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKNQHKDISAVLECINQMPLLSSVLHSQRNSHPSPKLCDLIYLLHWLLVEQSPSLEEVPRDQYDSVLNLVSCEPNVAKPDFIFQVQYSPQSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNFGLQQHFNKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQED***************GEVPHKYYVVENSALVKVKYVLVYTRH*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEPSDIDVKITELKQILAWNKLGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKNQHKDISAVLECINQMPLLSSVLHSQRNSHPSPKLCDLIYLLHWLLVEQSPSLEEVPRDQYDSVLNLVSCEPNVAKPDFIFQVQYSPQSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNFGLQQHFNKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQEDTEENRRRALAQDSLGGEVPHKYYVVENSALVKVKYVLVYTRHKVTASHQVH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	291	2.2.26 [Sep-21-2011]
Q8N5Y8	322	Mono [ADP-ribose] polymer	yes	N/A	0.890	0.804	0.384	1e-48
Q7TMM8	322	Mono [ADP-ribose] polymer	yes	N/A	0.865	0.782	0.386	4e-48
Q5U2Q4	322	Mono [ADP-ribose] polymer	yes	N/A	0.862	0.779	0.396	4e-48

>sp|Q8N5Y8|PAR16_HUMAN Mono [ADP-ribose] polymerase PARP16 OS=Homo sapiens GN=PARP16 PE=1 SV=2

 Score =  193 bits (490), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 105/273 (38%), Positives = 169/273 (61%), Gaps = 14/273 (5%)

Query: 14  KQILAWNKLGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKNQHKDISAVLECINQMPLLS 73
           ++    + L  D++ S+F SA QSY+  S L PFP  + +   KD  A+L   +++P L 
Sbjct: 10  REAAGRDMLAADLRCSLFASALQSYKRDSVLRPFPASYARGDCKDFEALLADASKLPNLK 69

Query: 74  SVLHSQRNSHPSPKLCDLIYLLHWLLVEQSPSLEEVPRDQYDSVLNLVSC-EPNVAKPDF 132
            +L S  ++H   +  DL+    W+L  +  ++    + +++ +  L       V  PDF
Sbjct: 70  ELLQSSGDNHK--RAWDLV---SWILSSKVLTIHSAGKAEFEKIQKLTGAPHTPVPAPDF 124

Query: 133 IFQVQYSPQSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNFGLQQHFNKNSLFGQGI 192
           +F+++Y   ++ +   +K   G + +++AFHGSRLENFHSI++ GL  H NK SLFG+G 
Sbjct: 125 LFEIEYFDPANAKFYETK---GERDLIYAFHGSRLENFHSIIHNGLHCHLNKTSLFGEGT 181

Query: 193 YLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQ---EDTEE-NRRRA 248
           YL+S L + LIYSP+  GW  S +G  LS V++C ++D PD VKCQ   +D++E +RRRA
Sbjct: 182 YLTSDLSLALIYSPHGHGWQHSLLGPILSCVAVCEVIDHPD-VKCQTKKKDSKEIDRRRA 240

Query: 249 LAQDSLGGEVPHKYYVVENSALVKVKYVLVYTR 281
             + S GG++P KY+VV N+ L++VKY+LVY++
Sbjct: 241 RIKHSEGGDIPPKYFVVTNNQLLRVKYLLVYSQ 273

Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: 3EC: 0

>sp|Q7TMM8|PAR16_MOUSE Mono [ADP-ribose] polymerase PARP16 OS=Mus musculus GN=Parp16 PE=2 SV=2

 Score =  192 bits (487), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 102/264 (38%), Positives = 161/264 (60%), Gaps = 12/264 (4%)

Query: 22  LGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKNQHKDISAVLECINQMPLLSSVLHSQRN 81
           L  D++ S+F SA QSY+  S L PFP  + ++  KD  A+L    ++P L  +L S R+
Sbjct: 18  LAADLRCSLFASALQSYKRDSVLRPFPASYARHDCKDFEALLADTGRLPNLKELLQSSRD 77

Query: 82  SHPSPKLCDLIYLLHWLLVEQSPSLEEVPRDQYDSVLNLVSC-EPNVAKPDFIFQVQYSP 140
           +    +  DL+    W+L  +  ++    + +++ +  L       V  PDF+F+++Y  
Sbjct: 78  T--DKQAWDLV---SWILSSKILTIHSAKKAEFEKIQQLTGAPHTPVPTPDFLFEIEYFD 132

Query: 141 QSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNFGLQQHFNKNSLFGQGIYLSSQLGI 200
            ++     +K   G + +++AFHGSRLENFHSI++ GL  H NK SLFG+G YL+S L +
Sbjct: 133 PANSRFYETK---GERDLIYAFHGSRLENFHSIIHNGLHCHLNKTSLFGEGTYLTSDLSL 189

Query: 201 CLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPD---QVKCQEDTEENRRRALAQDSLGGE 257
            LIYSP+  GW  S +G  LS V++C ++D PD   Q+K ++  E +R RA  + S GGE
Sbjct: 190 ALIYSPHGHGWQHSLLGPILSCVAVCEVIDHPDVKCQIKKKDSKEIDRSRARIKHSEGGE 249

Query: 258 VPHKYYVVENSALVKVKYVLVYTR 281
           +P KY+VV N+ L++VKY+LVY++
Sbjct: 250 IPPKYFVVTNNQLLRVKYLLVYSQ 273

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: 0

>sp|Q5U2Q4|PAR16_RAT Mono [ADP-ribose] polymerase PARP16 OS=Rattus norvegicus GN=Parp16 PE=2 SV=1

 Score =  191 bits (486), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 105/265 (39%), Positives = 164/265 (61%), Gaps = 14/265 (5%)

Query: 22  LGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKNQHKDISAVLECINQMPLLSSVLHSQRN 81
           L  D++ S+F SA QSY+  S L PFP  + ++  KD  A+L    ++P L  +L S R+
Sbjct: 18  LAADLRCSLFASALQSYKRDSVLRPFPASYARHDCKDFEALLADTGRLPNLKELLQSSRD 77

Query: 82  SHPSPKLCDLIYLLHWLLVEQSPSLEEVPRDQYDSVLNLVSC-EPNVAKPDFIFQVQYSP 140
           +    +  DL+    W+L  +  ++    + +++ +  L       V  PDF+F+++Y  
Sbjct: 78  T--DKQTWDLV---SWILSSKILTIHSAEKAEFEKIQQLTGAPHTPVPIPDFLFEIEYFD 132

Query: 141 QSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNFGLQQHFNKNSLFGQGIYLSSQLGI 200
            ++     +K   G + +++AFHGSRLENFHSI++ GL  H NK SLFG+G YL+S L +
Sbjct: 133 PANARFYETK---GGRDLIYAFHGSRLENFHSIIHNGLHCHLNKTSLFGEGTYLTSDLSL 189

Query: 201 CLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQ---EDTEE-NRRRALAQDSLGG 256
            LIYSP+  GW  S +G  LS V++C ++D PD VKCQ   +D++E +R RA  + S GG
Sbjct: 190 ALIYSPHGRGWQHSLLGQTLSCVAVCEVIDHPD-VKCQTKKKDSKEIDRSRARIKHSEGG 248

Query: 257 EVPHKYYVVENSALVKVKYVLVYTR 281
           +VP KY+VV N+ L++VKY+LVY++
Sbjct: 249 DVPPKYFVVTNNQLLRVKYLLVYSQ 273

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
383856138	744	PREDICTED: uncharacterized protein LOC10	0.941	0.368	0.473	1e-67
340717330	747	PREDICTED: hypothetical protein LOC10064	0.941	0.366	0.465	1e-66
350407786	747	PREDICTED: hypothetical protein LOC10074	0.941	0.366	0.444	1e-65
328777873	745	PREDICTED: hypothetical protein LOC55186	0.941	0.367	0.448	1e-64
307169182	367	Poly [ADP-ribose] polymerase 16 [Campono	0.958	0.760	0.443	4e-64
332030893	755	G2/mitotic-specific cyclin-B [Acromyrmex	0.958	0.369	0.436	3e-62
307211610	758	G2/mitotic-specific cyclin-B [Harpegnath	0.958	0.368	0.433	3e-61
301617963	352	PREDICTED: poly [ADP-ribose] polymerase	0.931	0.769	0.383	1e-52
170284468	360	LOC445875 protein [Xenopus laevis]	0.917	0.741	0.380	1e-52
118835714	357	LOC445875 protein [Xenopus laevis]	0.917	0.747	0.380	2e-52

>gi|383856138|ref|XP_003703567.1| PREDICTED: uncharacterized protein LOC100883735 [Megachile rotundata]

 Score =  262 bits (670), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 132/279 (47%), Positives = 188/279 (67%), Gaps = 5/279 (1%)

Query: 5   DIDVKITELKQILAWNKLGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKNQHKDISAVLE 64
           DI  KI  LK +L  +    D+KWS+FV+AC +YR  +CL PFPPM+IKN+ KDI A+  
Sbjct: 50  DIKKKILSLKHLLEKDIKAADLKWSLFVAACNTYRYDTCLKPFPPMYIKNECKDIEALRR 109

Query: 65  CINQMPLLSSVLHSQRNSHPSPKLCDLIYLLHWLLVE-QSPSLEEVPRDQYDSVLNLVSC 123
            I  +P L+ +  +        +    I LLHW+L+  ++P ++ + ++ YDS+L  V  
Sbjct: 110 SIELIPPLAVIFDALSEPDVYDRYGTAIELLHWVLIRLRNPYIKSINKESYDSILRKVPS 169

Query: 124 EPNVAKPDFIFQVQYSPQSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNFGLQQHFN 183
           E +VA P+ IFQV  + QS+ E  W  L+ G     HA+HGSRLENFHSI+++GLQQ+  
Sbjct: 170 EMSVAAPNLIFQVASAKQSTSEEKWKMLAQGHT-TFHAYHGSRLENFHSIIHYGLQQNMC 228

Query: 184 KNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQEDTEE 243
           K SLFG GIYLSS+LG+ L YSP   GWGGS +GSE+S ++LC +V+  D VK   D+E+
Sbjct: 229 KKSLFGNGIYLSSELGVSLPYSPVGYGWGGSMLGSEMSCIALCELVNRVD-VKTG-DSED 286

Query: 244 NRRRALAQDSLGGEVPHKYYVVENSALVKVKYVLVYTRH 282
           + R+A+  DS+GG VP+KYY+V NS LV+V+Y+LVY++ 
Sbjct: 287 SARKAVT-DSMGGRVPNKYYLVTNSELVRVRYLLVYSQE 324

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717330|ref|XP_003397137.1| PREDICTED: hypothetical protein LOC100644851 [Bombus terrestris]

 Score =  259 bits (661), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 130/279 (46%), Positives = 187/279 (67%), Gaps = 5/279 (1%)

Query: 5   DIDVKITELKQILAWNKLGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKNQHKDISAVLE 64
           D++ K+  LK +L  +    D+KWS+FV+AC +YR  +CL PFPPM+IKN+ KDI A+  
Sbjct: 52  DVEKKVQCLKHVLEKDLRAADLKWSLFVAACNTYRYDTCLKPFPPMYIKNECKDIEALRR 111

Query: 65  CINQMPLLSSVLHSQRNSHPSPKLCDLIYLLHWLLVE-QSPSLEEVPRDQYDSVLNLVSC 123
            I  +P L+ +L +   S    K    I LL W+LV  + P ++ + ++ YD +L  V  
Sbjct: 112 AIEVIPPLAVILKALSESDAYEKYGMAIDLLQWVLVRLRDPYIKSIKKENYDLILRKVPS 171

Query: 124 EPNVAKPDFIFQVQYSPQSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNFGLQQHFN 183
           E  V  P+ IFQV  + QS+ E  W  ++ G     +A+HGSRLENFHSI+++GLQQ+  
Sbjct: 172 EMPVVAPNLIFQVTSTKQSTSEDRWKTIAQGHT-TFYAYHGSRLENFHSIIHYGLQQNMC 230

Query: 184 KNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQEDTEE 243
           KNSLFG+GIYLSS+LG+ L YSP   GWGGS +GSE+S V+LC +++  D VK   D+E+
Sbjct: 231 KNSLFGKGIYLSSELGVSLPYSPIGYGWGGSVLGSEMSCVALCELINHTD-VKTG-DSED 288

Query: 244 NRRRALAQDSLGGEVPHKYYVVENSALVKVKYVLVYTRH 282
           N  R+L  DS+GG VP+KYY+V NS LV+V+Y+L+Y++ 
Sbjct: 289 N-ARSLVSDSIGGRVPNKYYLVTNSELVRVRYLLIYSQQ 326

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350407786|ref|XP_003488195.1| PREDICTED: hypothetical protein LOC100744967 [Bombus impatiens]

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 124/279 (44%), Positives = 182/279 (65%), Gaps = 5/279 (1%)

Query: 5   DIDVKITELKQILAWNKLGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKNQHKDISAVLE 64
           D++ K+  LK +L  +    D+KWS+FV+AC +YR  +CL PFPPM+IKN+ KDI A+  
Sbjct: 52  DVEKKVQCLKHVLEKDLRAADLKWSLFVAACNTYRYDTCLKPFPPMYIKNECKDIEALRR 111

Query: 65  CINQMPLLSSVLHSQRNSHPSPKLCDLIYLLHWLLVE-QSPSLEEVPRDQYDSVLNLVSC 123
            I  +P L+ +L +   S    K    I LL W+LV  + P ++ + ++ YD +L  V  
Sbjct: 112 AIEVIPPLAVILKALSESDVYEKYGMAIDLLQWVLVRLRDPYIKSIKKENYDLILRKVPS 171

Query: 124 EPNVAKPDFIFQVQYSPQSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNFGLQQHFN 183
           E  V  P+ IFQV  + QS+ E  W  ++ G     +A+HGSRLENFHSI+++GLQQ   
Sbjct: 172 EMPVVAPNLIFQVTSTKQSTSEDRWKTIAQGHT-TFYAYHGSRLENFHSIIHYGLQQSMC 230

Query: 184 KNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQEDTEE 243
           KNSLFG+GIYLSS+LG+ L YSP   GWGGS +GSE+S ++LC ++   + +  +    E
Sbjct: 231 KNSLFGKGIYLSSELGVSLPYSPVGYGWGGSVLGSEMSCIALCELI---NHIDVKTGDSE 287

Query: 244 NRRRALAQDSLGGEVPHKYYVVENSALVKVKYVLVYTRH 282
           +  R+L  DS+GG VP+KYY+V NS LV+V+Y+L+Y++ 
Sbjct: 288 DDARSLVSDSMGGRVPNKYYLVTNSELVRVRYLLIYSQQ 326

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328777873|ref|XP_624248.3| PREDICTED: hypothetical protein LOC551860 [Apis mellifera]

 Score =  252 bits (644), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 125/279 (44%), Positives = 181/279 (64%), Gaps = 5/279 (1%)

Query: 5   DIDVKITELKQILAWNKLGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKNQHKDISAVLE 64
           D++ KI  LK +L  +    D+KWS+FV+AC +YR  +CL PFP M+IKN+ KDI A+  
Sbjct: 50  DVEKKIQCLKHLLEKDLRAADLKWSLFVAACNTYRYDTCLKPFPSMYIKNECKDIEALRR 109

Query: 65  CINQMPLLSSVLHSQRNSHPSPKLCDLIYLLHWLLVE-QSPSLEEVPRDQYDSVLNLVSC 123
            I  +P L+ +  +        +    I LLHW+LV  + P ++ + ++ YDS+L  V  
Sbjct: 110 AIEIIPPLAVIFKALSEQDVYERYGTAIDLLHWVLVRLRDPYIKSIKKESYDSILRKVPS 169

Query: 124 EPNVAKPDFIFQVQYSPQSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNFGLQQHFN 183
           E +V  P+ IFQV  + QS+ E  W  ++ G     +A+HGSRLENFHSI+++GLQQ   
Sbjct: 170 EMSVVAPNLIFQVTSTKQSTSEDRWKTIAEGHS-TFYAYHGSRLENFHSIVHYGLQQSMC 228

Query: 184 KNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQEDTEE 243
           K SLFG+GIYLSS+LG+ L YSP   GWGGS +GSE+S ++LC +++  D VK  +   E
Sbjct: 229 KKSLFGKGIYLSSELGVSLPYSPVGYGWGGSVLGSEMSCIALCELINHAD-VKIGD--SE 285

Query: 244 NRRRALAQDSLGGEVPHKYYVVENSALVKVKYVLVYTRH 282
           N  R L  DS GG VP+KYY+V NS L++V+Y+L+Y++ 
Sbjct: 286 NNARNLVTDSTGGRVPNKYYLVTNSELIRVRYLLIYSQQ 324

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307169182|gb|EFN61998.1| Poly [ADP-ribose] polymerase 16 [Camponotus floridanus]

 Score =  250 bits (639), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 126/284 (44%), Positives = 187/284 (65%), Gaps = 5/284 (1%)

Query: 5   DIDVKITELKQILAWNKLGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKNQHKDISAVLE 64
           ++++KI  LK +L  +    D+KWS+FV+A  +YR  SCL PFPPM+IKN+ KDI A+  
Sbjct: 36  NLEMKILSLKHLLEKDPKAADLKWSLFVAASNTYRYDSCLKPFPPMYIKNECKDIEALRR 95

Query: 65  CINQMPLLSSVLHSQRNSHPSPKLCDLIYLLHWLLVE-QSPSLEEVPRDQYDSVLNLVSC 123
            I  +P L  +      +       ++I LL+W+L+  + P ++ V ++ YDS+L  V  
Sbjct: 96  AIESVPSLPLIYKELNEASVYENYSEMIELLYWVLIRLRDPHIKSVQKENYDSILKKVPL 155

Query: 124 EPNVAKPDFIFQVQYSPQSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNFGLQQHFN 183
           E  V  P+ IFQV  + QS+IE  W K S      L+A+HGSRLENFHSI+++GLQQ+  
Sbjct: 156 EMPVTPPNLIFQVASAKQSTIEEKW-KSSATNYSTLYAYHGSRLENFHSIVHYGLQQNMC 214

Query: 184 KNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQEDTEE 243
           K S FG+GIYLSS+LG+ L YSP   GWGGS +GSE+S ++LC ++D PD +K  +  + 
Sbjct: 215 KRSQFGKGIYLSSELGVSLPYSPVGYGWGGSLLGSEISCIALCELIDHPD-IKRGDSRDS 273

Query: 244 NRRRALAQDSLGGEVPHKYYVVENSALVKVKYVLVYTRHKVTAS 287
            + R +  DS+GG++P KY++V NS LV+++Y+LVYT++  T S
Sbjct: 274 AQNRLI--DSVGGKIPDKYFIVTNSDLVRIRYLLVYTQNLHTTS 315

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|332030893|gb|EGI70529.1| G2/mitotic-specific cyclin-B [Acromyrmex echinatior]

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 124/284 (43%), Positives = 184/284 (64%), Gaps = 5/284 (1%)

Query: 5   DIDVKITELKQILAWNKLGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKNQHKDISAVLE 64
           D++ KIT LKQ+L  +    D+KWS+FV+A  +YR  SCL PFPPM+IKN+ KDI A+  
Sbjct: 51  DVERKITTLKQLLEKDPRAADLKWSLFVAASNTYRYDSCLKPFPPMYIKNECKDIEALRR 110

Query: 65  CINQMPLLSSVLHSQRNSHPSPKLCDLIYLLHWLLVE-QSPSLEEVPRDQYDSVLNLVSC 123
            I  +P L  +      +       ++I LL+W+L+  + P ++ V ++ Y+S+L  V  
Sbjct: 111 VIESVPPLLVICKELGETDVYQNYGEIIELLYWVLLRLRDPYIKSVQKEYYNSILRKVPL 170

Query: 124 EPNVAKPDFIFQVQYSPQSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNFGLQQHFN 183
           E  VA P+ IFQ+  + QS+ E  W   + G     +A+HGSRLENFHSI+++GLQQ+  
Sbjct: 171 EVPVAAPNLIFQMASAKQSTSEEKWKSNAKGHS-TFYAYHGSRLENFHSIVHYGLQQNMC 229

Query: 184 KNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQEDTEE 243
           K S FG+GIY SS+LG+ L YSP   GWGGS +GSE+S ++LC +++ PD  +   D+ +
Sbjct: 230 KRSQFGKGIYFSSELGVSLPYSPVGYGWGGSLLGSEISCIALCELINHPDIKRG--DSRD 287

Query: 244 NRRRALAQDSLGGEVPHKYYVVENSALVKVKYVLVYTRHKVTAS 287
           N +  L+ DS+ G +P KY+VV NS LV+++Y+LVYT+   T S
Sbjct: 288 NAQNTLS-DSVSGRIPEKYFVVTNSDLVRIRYLLVYTQDLHTTS 330

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307211610|gb|EFN87659.1| G2/mitotic-specific cyclin-B [Harpegnathos saltator]

 Score =  241 bits (615), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 123/284 (43%), Positives = 181/284 (63%), Gaps = 5/284 (1%)

Query: 5   DIDVKITELKQILAWNKLGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKNQHKDISAVLE 64
           +++ KI+ LK +L  +    D KWS+FV+A  +YR  +CL PFPPM+IKN+ KDI A+  
Sbjct: 51  NVEKKISLLKHLLGKDLKAADFKWSLFVAASNTYRYDTCLKPFPPMYIKNECKDIEALRR 110

Query: 65  CINQMPLLSSVLHSQRNSHPSPKLCDLIYLLHWLLVE-QSPSLEEVPRDQYDSVLNLVSC 123
            I  +P LS +      +       + I LL+W+L+  + P ++ V ++ YD VL  V  
Sbjct: 111 AIETVPPLSVIFKELSEAGVYENYGEAIELLYWVLLRLRDPHIKSVQKEYYDWVLKKVPL 170

Query: 124 EPNVAKPDFIFQVQYSPQSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNFGLQQHFN 183
           E   A P+ IFQV+   QS++E  W  +    +   +A+HG+RLENFHSI+++GLQQ+  
Sbjct: 171 EMPAAAPNLIFQVESMKQSTMEEKWKSIR-KDQTTFYAYHGTRLENFHSIVHYGLQQNMC 229

Query: 184 KNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQEDTEE 243
           K S FG+GIYLSS+LG+ L YSP   GWGGS +GSE+S ++LC +++ PD  +   D+ +
Sbjct: 230 KRSEFGKGIYLSSELGVSLPYSPVGYGWGGSVLGSEISCIALCELINHPDIKRG--DSSD 287

Query: 244 NRRRALAQDSLGGEVPHKYYVVENSALVKVKYVLVYTRHKVTAS 287
             +  L  DS+GG +P+KYYVV NS LVKV+Y+LVY +   T S
Sbjct: 288 VMQNTL-DDSMGGRIPNKYYVVTNSDLVKVRYLLVYAQDVQTIS 330

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|301617963|ref|XP_002938403.1| PREDICTED: poly [ADP-ribose] polymerase 16-like [Xenopus (Silurana) tropicalis]

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 110/287 (38%), Positives = 183/287 (63%), Gaps = 16/287 (5%)

Query: 2   EPSDIDVKITELKQILAWNKLGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKNQHKDISA 61
           +P +  + + E  +I++ + L  D+K S+FV+A +SY+  S L PFP ++  +Q+KD  A
Sbjct: 27  DPHEFGLNMME--EIISRDLLSADLKCSLFVAALKSYKRDSVLRPFPALYTSDQYKDFEA 84

Query: 62  VLECINQMPLLSSVLHSQRNSHPSPKLCDLIYLLHWLLVEQSPSLEEVPRDQYDSVLNLV 121
           ++   + +P L  ++  + N         L+ LL W+L E+  ++  V +D+Y+ +  L 
Sbjct: 85  LIADSSALPGLHEIIQDKNNRDQK-----LLNLLSWILSEKLFTIRSVQKDKYEEIQALP 139

Query: 122 SCEPN-VAKPDFIFQVQYSPQSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNFGLQQ 180
               + +  PDF+F+++Y  + S +   ++   G + +++AFHGSRLENFHSIL+ GL  
Sbjct: 140 GSPSHALPTPDFLFEIEYCKKLSAKFQETR---GNRDLIYAFHGSRLENFHSILHNGLHC 196

Query: 181 HFNKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQ-- 238
           H NK S FG+G YL+S LG+ L+YSP+  GW  S +G  LS V++C ++D PD VKCQ  
Sbjct: 197 HLNKTSFFGEGTYLTSDLGLALLYSPHGQGWTRSILGPVLSCVAMCEMIDHPD-VKCQAK 255

Query: 239 --EDTEENRRRALAQDSLGGEVPHKYYVVENSALVKVKYVLVYTRHK 283
             + +E +R+RA AQ+S GG+VP KY+VV N+ L++VKY++VY++ +
Sbjct: 256 KKDSSEIDRKRARAQNSEGGDVPQKYFVVTNNQLLRVKYLMVYSQEQ 302

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

>gi|170284468|gb|AAI61010.1| LOC445875 protein [Xenopus laevis]

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/281 (38%), Positives = 183/281 (65%), Gaps = 14/281 (4%)

Query: 8   VKITELKQILAWNKLGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKNQHKDISAVLECIN 67
           + +  +++I+  + L  D+K S+FV+A +SY+  S L PFP ++  +Q+KD  A++   +
Sbjct: 39  LGLNMVEEIITRDLLSADLKCSLFVAALKSYKRDSVLRPFPALYTSDQYKDFDALITDSS 98

Query: 68  QMPLLSSVLHSQRNSHPSPKLCDLIYLLHWLLVEQSPSLEEVPRDQYDSVLNLVSCEPN- 126
            +P L  ++  + N         ++ LL W+L ++  +++ VP+D+Y+ +  L     + 
Sbjct: 99  ALPGLPEIIQDKNNRDQK-----VLNLLRWILSDKLFTVKSVPKDKYEEIQALPGSPSHA 153

Query: 127 VAKPDFIFQVQYSPQSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNFGLQQHFNKNS 186
           +  PDF+F+++Y  + S +   ++   G + +++AFHGSRLENFHSIL+ GL  H NK S
Sbjct: 154 LPTPDFLFELEYCEKLSAKFQETR---GDRDLIYAFHGSRLENFHSILHNGLHCHLNKTS 210

Query: 187 LFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQ----EDTE 242
           LFG+G YL+S LG+ L+YSP+  GW  S +G  LS V++C ++D PD VKCQ    + +E
Sbjct: 211 LFGEGTYLTSDLGLALLYSPHGQGWTRSMLGPVLSCVAMCEMIDHPD-VKCQAKKKDSSE 269

Query: 243 ENRRRALAQDSLGGEVPHKYYVVENSALVKVKYVLVYTRHK 283
            +R+RA A++S GG+VP KY+VV N+ L++VKY++VY++ +
Sbjct: 270 IDRKRARARNSEGGDVPQKYFVVTNNQLLRVKYLMVYSQEQ 310

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|118835714|gb|AAI28920.1| LOC445875 protein [Xenopus laevis]

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 107/281 (38%), Positives = 183/281 (65%), Gaps = 14/281 (4%)

Query: 8   VKITELKQILAWNKLGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKNQHKDISAVLECIN 67
           + +  +++I+  + L  D+K S+FV+A +SY+  S L PFP ++  +Q+KD  A++   +
Sbjct: 36  LGLNMVEEIITRDLLSADLKCSLFVAALKSYKRDSVLRPFPALYTSDQYKDFDALITDSS 95

Query: 68  QMPLLSSVLHSQRNSHPSPKLCDLIYLLHWLLVEQSPSLEEVPRDQYDSVLNLVSCEPN- 126
            +P L  ++  + N         ++ LL W+L ++  +++ VP+D+Y+ +  L     + 
Sbjct: 96  ALPGLPEIIQDKNNRDQK-----VLNLLRWILSDKLFTVKSVPKDKYEEIQALPGSPSHA 150

Query: 127 VAKPDFIFQVQYSPQSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNFGLQQHFNKNS 186
           +  PDF+F+++Y  + S +   ++   G + +++AFHGSRLENFHSIL+ GL  H NK S
Sbjct: 151 LPTPDFLFELEYCEKLSAKFQETR---GDRDLIYAFHGSRLENFHSILHNGLHCHLNKTS 207

Query: 187 LFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQ----EDTE 242
           LFG+G YL+S LG+ L+YSP+  GW  S +G  LS V++C ++D PD VKCQ    + +E
Sbjct: 208 LFGEGTYLTSDLGLALLYSPHGQGWTRSMLGPVLSCVAMCEMIDHPD-VKCQAKKKDSSE 266

Query: 243 ENRRRALAQDSLGGEVPHKYYVVENSALVKVKYVLVYTRHK 283
            +R+RA A++S GG+VP KY+VV N+ L++VKY++VY++ +
Sbjct: 267 IDRKRARARNSEGGDVPQKYFVVTNNQLLRVKYLMVYSQEQ 307

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
ZFIN|ZDB-GENE-040426-2289	328	parp16 "poly (ADP-ribose) poly	0.948	0.841	0.370	8.5e-49
UNIPROTKB|F1PT71	322	PARP16 "Uncharacterized protei	0.924	0.835	0.383	1.4e-48
UNIPROTKB|Q8N5Y8	322	PARP16 "Mono [ADP-ribose] poly	0.862	0.779	0.396	2.3e-48
UNIPROTKB|A4FV46	322	PARP16 "PARP16 protein" [Bos t	0.893	0.807	0.396	2.9e-48
MGI|MGI:2446133	322	Parp16 "poly (ADP-ribose) poly	0.893	0.807	0.392	7.7e-48
RGD|1306243	322	Parp16 "poly (ADP-ribose) poly	0.893	0.807	0.392	9.8e-48
UNIPROTKB|F1SJL3	324	PARP16 "Uncharacterized protei	0.862	0.774	0.396	1.2e-47
UNIPROTKB|F1NBH6	300	F1NBH6 "Uncharacterized protei	0.865	0.84	0.403	4.8e-46
UNIPROTKB|F1LT15	297	Parp16 "Mono [ADP-ribose] poly	0.714	0.700	0.380	1.9e-37
UNIPROTKB|H3BV75	72	PARP16 "Mono [ADP-ribose] poly	0.123	0.5	0.527	4.1e-05

ZFIN|ZDB-GENE-040426-2289 parp16 "poly (ADP-ribose) polymerase family, member 16" [Danio rerio (taxid:7955)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 110/297 (37%), Positives = 182/297 (61%)

Query:     1 MEPSDIDVKITELK-QILAWNKLGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKNQHKDI 59
             M+P      + EL    L  + +  D++ S+FV+A QSY+  S L PFPP +++ + KD 
Sbjct:     1 MQPPLPAAAVRELVCSCLHRDPVAADLRCSLFVAAVQSYKHDSVLRPFPPRYLRGEIKDF 60

Query:    60 SAVLECINQMPLLSSVL---HSQRNSHPSPKLCDLIYLLHWLLVEQSPSLEEVPRDQYDS 116
               + + ++ +P +  ++   H   + H +        L+HW+L  +S +++ + ++++  
Sbjct:    61 EELQKDVDSLPNVRDLVRLGHGDGDHHMA--------LVHWVLSSKSFAVKTLQKEEFAR 112

Query:   117 VLNLVSCEP-NVAKPDFIFQVQYSPQSSIESNWSKLSLGRKKILHAFHGSRLENFHSILN 175
             +  L   E  +   PDF+F++QY     + S + +   GR  +++AFHGSRLENFHSI++
Sbjct:   113 LSQLAQREGVSAPAPDFLFELQYC--DLLNSKFERTRAGRD-LIYAFHGSRLENFHSIIH 169

Query:   176 FGLQQHFNKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQV 235
              GL  H NK SLFG+G YL+S L + ++YSP+  GW  S +G  +S V+LC I+D PD V
Sbjct:   170 NGLHCHLNKTSLFGEGTYLTSDLSMAILYSPHGNGWRESVLGPFISCVALCEIIDHPD-V 228

Query:   236 KCQ---EDTEE-NRRRALAQDSLGGEVPHKYYVVENSALVKVKYVLVYTRHKVTASH 288
             KCQ   +D+E  +R+R  A++S GGEVP KY+VV N+ L++VKY+LVY++ +  + H
Sbjct:   229 KCQVKKKDSESIDRQRLRARNSEGGEVPEKYFVVTNNELLRVKYLLVYSQRRYRSRH 285

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

UNIPROTKB|F1PT71 PARP16 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 109/284 (38%), Positives = 178/284 (62%)

Query:    13 LKQILAWNKLGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKNQHKDISAVLECINQMPLL 72
             +++  A + L  D++ S+F SA QSY+  S L PFP  + ++  KD  A+L   +++P L
Sbjct:     9 VREAAARDVLAADLRCSLFASALQSYKRDSALRPFPAAYARHDCKDFEALLADASKLPNL 68

Query:    73 SSVLHSQRNSHPSPKLCDLIYLLHWLLVEQSPSLEEVPRDQYDSVLNLVSCEPN-VAKPD 131
             + +L S  +     +  DL+    W+L  +  ++    + +++ +  L       V  PD
Sbjct:    69 NELLQSSGDKDLRAR--DLV---SWILSSKVLTVHSAGKSEFEKIQKLTGAPHTPVPVPD 123

Query:   132 FIFQVQYSPQSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNFGLQQHFNKNSLFGQG 191
             F+F+++YS  ++ +   +K   G + +++AFHGSRLENFHSI++ GL  H NK SLFG+G
Sbjct:   124 FLFEIEYSNPANAKFYETK---GERDLIYAFHGSRLENFHSIIHNGLHCHLNKTSLFGEG 180

Query:   192 IYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQ---EDTEE-NRRR 247
              YL+S L + LIYSP+  GW  S +G  LS V++C ++D PD VKCQ   +D++E +RRR
Sbjct:   181 TYLTSDLSLALIYSPHGLGWQRSLLGPILSCVAVCEVIDHPD-VKCQMKKKDSKEIDRRR 239

Query:   248 ALAQDSLGGEVPHKYYVVENSALVKVKYVLVYTRHKVT-ASHQV 290
             A  + S GG+VP KY+VV N+ L++V+Y+LVY++ + + AS Q+
Sbjct:   240 ARIKHSEGGDVPPKYFVVTNNQLLRVRYLLVYSQKQPSRASSQL 283

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

UNIPROTKB|Q8N5Y8 PARP16 "Mono [ADP-ribose] polymerase PARP16" [Homo sapiens (taxid:9606)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 105/265 (39%), Positives = 166/265 (62%)

Query:    22 LGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKNQHKDISAVLECINQMPLLSSVLHSQRN 81
             L  D++ S+F SA QSY+  S L PFP  + +   KD  A+L   +++P L  +L S  +
Sbjct:    18 LAADLRCSLFASALQSYKRDSVLRPFPASYARGDCKDFEALLADASKLPNLKELLQSSGD 77

Query:    82 SHPSPKLCDLIYLLHWLLVEQSPSLEEVPRDQYDSVLNLVSCEPN-VAKPDFIFQVQYSP 140
             +H   +  DL+    W+L  +  ++    + +++ +  L       V  PDF+F+++Y  
Sbjct:    78 NHK--RAWDLV---SWILSSKVLTIHSAGKAEFEKIQKLTGAPHTPVPAPDFLFEIEYFD 132

Query:   141 QSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNFGLQQHFNKNSLFGQGIYLSSQLGI 200
              ++ +   +K   G + +++AFHGSRLENFHSI++ GL  H NK SLFG+G YL+S L +
Sbjct:   133 PANAKFYETK---GERDLIYAFHGSRLENFHSIIHNGLHCHLNKTSLFGEGTYLTSDLSL 189

Query:   201 CLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQ---EDTEE-NRRRALAQDSLGG 256
              LIYSP+  GW  S +G  LS V++C ++D PD VKCQ   +D++E +RRRA  + S GG
Sbjct:   190 ALIYSPHGHGWQHSLLGPILSCVAVCEVIDHPD-VKCQTKKKDSKEIDRRRARIKHSEGG 248

Query:   257 EVPHKYYVVENSALVKVKYVLVYTR 281
             ++P KY+VV N+ L++VKY+LVY++
Sbjct:   249 DIPPKYFVVTNNQLLRVKYLLVYSQ 273

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

GO:0006986 "response to unfolded protein" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0003956 "NAD(P)+-protein-arginine ADP-ribosyltransferase activity" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

UNIPROTKB|A4FV46 PARP16 "PARP16 protein" [Bos taurus (taxid:9913)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 109/275 (39%), Positives = 171/275 (62%)

Query:    22 LGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKNQHKDISAVLECINQMPLLSSVLHSQRN 81
             L  D++ S F SA +SY+  S L PFP  + ++  KD  A+L   +++P L  +L S  +
Sbjct:    18 LAADLRCSFFASALRSYKRDSVLRPFPASYARHDCKDFEALLADASKLPNLKELLQS--S 75

Query:    82 SHPSPKLCDLIYLLHWLLVEQSPSLEEVPRDQYDSVLNLVSCEPN-VAKPDFIFQVQYSP 140
                 P   DL   + W+L  +  ++    + +++ +  L     + V  PDF+F+++YS 
Sbjct:    76 GEKDPWAWDL---MSWILSSKVLTIHSAGKSEFEKIQKLTGTPHSPVPVPDFLFEIEYSD 132

Query:   141 QSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNFGLQQHFNKNSLFGQGIYLSSQLGI 200
              ++ +   +K   G + +++AFHGSRLENFHSI++ GL  H NK SLFG+G YL+S L +
Sbjct:   133 PANAKFYETK---GERDLIYAFHGSRLENFHSIIHNGLHCHLNKTSLFGEGTYLTSDLSL 189

Query:   201 CLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQ---EDTEE-NRRRALAQDSLGG 256
              LIYSP+  GW  S +G  LS V++C ++D PD VKCQ   +D++E +RRRA  + S GG
Sbjct:   190 ALIYSPHGHGWQHSLLGPILSCVAVCEVIDHPD-VKCQTKKKDSKEIDRRRARIKHSEGG 248

Query:   257 EVPHKYYVVENSALVKVKYVLVYTRHKVT-ASHQV 290
             +VP KY+VV N+ L++VKY+LVY++ +   AS Q+
Sbjct:   249 DVPPKYFVVTNNQLLRVKYLLVYSQKQPNRASSQL 283

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

MGI|MGI:2446133 Parp16 "poly (ADP-ribose) polymerase family, member 16" [Mus musculus (taxid:10090)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 108/275 (39%), Positives = 169/275 (61%)

Query:    22 LGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKNQHKDISAVLECINQMPLLSSVLHSQRN 81
             L  D++ S+F SA QSY+  S L PFP  + ++  KD  A+L    ++P L  +L S R+
Sbjct:    18 LAADLRCSLFASALQSYKRDSVLRPFPASYARHDCKDFEALLADTGRLPNLKELLQSSRD 77

Query:    82 SHPSPKLCDLIYLLHWLLVEQSPSLEEVPRDQYDSVLNLVSCEPN-VAKPDFIFQVQYSP 140
             +    +  DL+    W+L  +  ++    + +++ +  L       V  PDF+F+++Y  
Sbjct:    78 T--DKQAWDLV---SWILSSKILTIHSAKKAEFEKIQQLTGAPHTPVPTPDFLFEIEYFD 132

Query:   141 QSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNFGLQQHFNKNSLFGQGIYLSSQLGI 200
              ++     +K   G + +++AFHGSRLENFHSI++ GL  H NK SLFG+G YL+S L +
Sbjct:   133 PANSRFYETK---GERDLIYAFHGSRLENFHSIIHNGLHCHLNKTSLFGEGTYLTSDLSL 189

Query:   201 CLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQ---EDTEE-NRRRALAQDSLGG 256
              LIYSP+  GW  S +G  LS V++C ++D PD VKCQ   +D++E +R RA  + S GG
Sbjct:   190 ALIYSPHGHGWQHSLLGPILSCVAVCEVIDHPD-VKCQIKKKDSKEIDRSRARIKHSEGG 248

Query:   257 EVPHKYYVVENSALVKVKYVLVYTRHKVT-ASHQV 290
             E+P KY+VV N+ L++VKY+LVY++ +   AS Q+
Sbjct:   249 EIPPKYFVVTNNQLLRVKYLLVYSQKQPKRASSQL 283

GO:0003674 "molecular_function" evidence=ND

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

GO:0003956 "NAD(P)+-protein-arginine ADP-ribosyltransferase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006986 "response to unfolded protein" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

RGD|1306243 Parp16 "poly (ADP-ribose) polymerase family, member 16" [Rattus norvegicus (taxid:10116)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 108/275 (39%), Positives = 169/275 (61%)

Query:    22 LGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKNQHKDISAVLECINQMPLLSSVLHSQRN 81
             L  D++ S+F SA QSY+  S L PFP  + ++  KD  A+L    ++P L  +L S R+
Sbjct:    18 LAADLRCSLFASALQSYKRDSVLRPFPASYARHDCKDFEALLADTGRLPNLKELLQSSRD 77

Query:    82 SHPSPKLCDLIYLLHWLLVEQSPSLEEVPRDQYDSVLNLVSCEPN-VAKPDFIFQVQYSP 140
             +    +  DL+    W+L  +  ++    + +++ +  L       V  PDF+F+++Y  
Sbjct:    78 T--DKQTWDLV---SWILSSKILTIHSAEKAEFEKIQQLTGAPHTPVPIPDFLFEIEYFD 132

Query:   141 QSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNFGLQQHFNKNSLFGQGIYLSSQLGI 200
              ++     +K   G + +++AFHGSRLENFHSI++ GL  H NK SLFG+G YL+S L +
Sbjct:   133 PANARFYETK---GGRDLIYAFHGSRLENFHSIIHNGLHCHLNKTSLFGEGTYLTSDLSL 189

Query:   201 CLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQ---EDTEE-NRRRALAQDSLGG 256
              LIYSP+  GW  S +G  LS V++C ++D PD VKCQ   +D++E +R RA  + S GG
Sbjct:   190 ALIYSPHGRGWQHSLLGQTLSCVAVCEVIDHPD-VKCQTKKKDSKEIDRSRARIKHSEGG 248

Query:   257 EVPHKYYVVENSALVKVKYVLVYTRHKVT-ASHQV 290
             +VP KY+VV N+ L++VKY+LVY++ +   AS Q+
Sbjct:   249 DVPPKYFVVTNNQLLRVKYLLVYSQKQPKRASSQL 283

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0006986 "response to unfolded protein" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

UNIPROTKB|F1SJL3 PARP16 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 105/265 (39%), Positives = 164/265 (61%)

Query:    22 LGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKNQHKDISAVLECINQMPLLSSVLHSQRN 81
             L  D++ S F SA QSY+  S L PFP  + ++  KD  A+L   +++P L  +L S  +
Sbjct:    18 LAADLRCSFFASALQSYKRDSVLRPFPASYARHDCKDFEALLSDASKLPNLKELLQSSGD 77

Query:    82 SHPSPKLCDLIYLLHWLLVEQSPSLEEVPRDQYDSVLNLVSCEPN-VAKPDFIFQVQYSP 140
                     DL+    W+L  +  ++    + +++ +  L       V  PDF+F+++YS 
Sbjct:    78 E--DKWAWDLV---SWILSSKVLTIHSAGKSEFEKIQKLTGAPHTPVPVPDFLFEIEYSD 132

Query:   141 QSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNFGLQQHFNKNSLFGQGIYLSSQLGI 200
              ++ +   +K   G + +++AFHGSRLENFHSI++ GL  H NK SLFG+G YL+S L +
Sbjct:   133 PANAKFYETK---GERDLIYAFHGSRLENFHSIIHNGLHCHLNKTSLFGEGTYLTSDLSL 189

Query:   201 CLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQ---EDTEE-NRRRALAQDSLGG 256
              LIYSP+  GW  S +G  LS V++C ++D PD VKCQ   +D++E +RRRA  + S GG
Sbjct:   190 ALIYSPHGHGWQRSLLGPILSCVAVCEVIDHPD-VKCQTKKKDSKEIDRRRARIKHSEGG 248

Query:   257 EVPHKYYVVENSALVKVKYVLVYTR 281
             ++P KY+VV N+ L++VKY+LVY++
Sbjct:   249 DIPPKYFVVTNNQLLRVKYLLVYSQ 273

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

UNIPROTKB|F1NBH6 F1NBH6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 109/270 (40%), Positives = 168/270 (62%)

Query:    29 SIFVSACQSYRVSSCLHPFPPMF--IKNQHKDISAVLECINQMPLLSSVLHSQRNSHPSP 86
             S+F +A QSYR  S L PFP  +       KD  A+L     +P L  +L +  ++    
Sbjct:     3 SLFAAAPQSYRRDSVLRPFPSRYGGADAASKDFEALLADTEALPGLKELLGAAPSAEE-- 60

Query:    87 KLCDLIYLLHWLLVEQSPSLEEVPRDQYDSVLNLVSCE-PNVAKPDFIFQVQYSPQSSIE 145
             +  DL   L W+L  ++ +++ + + +Y+ +  L       V  PDF+F+V Y  Q  + 
Sbjct:    61 RTWDL---LSWILSPKTFTIQSIKKQEYEKIQELTGMSGAAVPAPDFLFEVTYCDQ--MN 115

Query:   146 SNWSKLSLGRKKILHAFHGSRLENFHSILNFGLQQHFNKNSLFGQGIYLSSQLGICLIYS 205
             + +++ + G + +++AFHGSRLENFHSIL+ GL  H N+ SLFG+G YL+S L + L+YS
Sbjct:   116 AKFAE-TRGEQDLIYAFHGSRLENFHSILHNGLHCHLNRTSLFGEGTYLTSDLSLALLYS 174

Query:   206 PYSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQ---EDTEE-NRRRALAQDSLGGEVPHK 261
             P+  GW  S +GS LS V++C I+D PD VKCQ   +D+EE +R+RA  ++S GG+VP K
Sbjct:   175 PHGLGWQRSTLGSILSCVAVCEIIDHPD-VKCQVKKKDSEEIDRKRARVKNSEGGDVPQK 233

Query:   262 YYVVENSALVKVKYVLVYTR--HKVTASHQ 289
             Y+VV N+ L++VKY+LVY++  H+   S Q
Sbjct:   234 YFVVTNNQLLQVKYLLVYSQKQHRSRPSGQ 263

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

UNIPROTKB|F1LT15 Parp16 "Mono [ADP-ribose] polymerase PARP16" [Rattus norvegicus (taxid:10116)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 83/218 (38%), Positives = 129/218 (59%)

Query:    22 LGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKNQHKDISAVLECINQMPLLSSVLHSQRN 81
             L  D++ S+F SA QSY+  S L PFP  + ++  KD  A+L    ++P L  +L S R+
Sbjct:    83 LAADLRCSLFASALQSYKRDSVLRPFPASYARHDCKDFEALLADTGRLPNLKELLQSSRD 142

Query:    82 SHPSPKLCDLIYLLHWLLVEQSPSLEEVPRDQYDSVLNLVSCEPN-VAKPDFIFQVQYSP 140
             +    +  DL+    W+L  +  ++    + +++ +  L       V  PDF+F+++Y  
Sbjct:   143 T--DKQTWDLV---SWILSSKILTIHSAEKAEFEKIQQLTGAPHTPVPIPDFLFEIEYFD 197

Query:   141 QSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNFGLQQHFNKNSLFGQGIYLSSQLGI 200
              ++     +K   G + +++AFHGSRLENFHSI++ GL  H NK SLFG+G YL+S L +
Sbjct:   198 PANARFYETK---GGRDLIYAFHGSRLENFHSIIHNGLHCHLNKTSLFGEGTYLTSDLSL 254

Query:   201 CLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQ 238
              LIYSP+  GW  S +G  LS V++C ++D PD VKCQ
Sbjct:   255 ALIYSPHGRGWQHSLLGQTLSCVAVCEVIDHPD-VKCQ 291

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

UNIPROTKB|H3BV75 PARP16 "Mono [ADP-ribose] polymerase PARP16" [Homo sapiens (taxid:9606)]

 Score = 103 (41.3 bits), Expect = 4.1e-05, P = 4.1e-05
 Identities = 19/36 (52%), Positives = 29/36 (80%)

Query:   246 RRALAQDSLGGEVPHKYYVVENSALVKVKYVLVYTR 281
             RRA  + S GG++P KY+VV N+ L++VKY+LVY++
Sbjct:     2 RRARIKHSEGGDIPPKYFVVTNNQLLRVKYLLVYSQ 37


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.414    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      291       291   0.00089  115 3  11 22  0.37    34
                                                     33  0.43    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  241 KB (2130 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.38u 0.12s 24.50t   Elapsed:  00:00:02
  Total cpu time:  24.38u 0.12s 24.50t   Elapsed:  00:00:02
  Start:  Thu Aug 15 16:08:47 2013   End:  Thu Aug 15 16:08:49 2013

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7TMM8	PAR16_MOUSE	2, ., 4, ., 2, ., 3, 0	0.3863	0.8659	0.7826	yes	N/A
Q8N5Y8	PAR16_HUMAN	2, ., 4, ., 2, ., 3, 0	0.3846	0.8900	0.8043	yes	N/A
Q5U2Q4	PAR16_RAT	2, ., 4, ., 2, ., 3, 0	0.3962	0.8625	0.7795	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.2	LOW CONFIDENCE prediction!
3rd Layer	2.4.2.30	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	291
pfam00644	206	pfam00644, PARP, Poly(ADP-ribose) polymerase catal	5e-17
cd01341	137	cd01341, ADP_ribosyl, ADP_ribosylating enzymes cat	0.002

>gnl|CDD|216040 pfam00644, PARP, Poly(ADP-ribose) polymerase catalytic domain

 Score = 77.4 bits (191), Expect = 5e-17
 Identities = 39/180 (21%), Positives = 62/180 (34%), Gaps = 38/180 (21%)

Query: 130 PDFIFQVQYSPQSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNFGLQQHFNKNSL-- 187
           P FI ++    +      +      R + L  +HGSRL NF  IL+ GL+    +  +  
Sbjct: 33  PLFILEIFRVQREGEWDRFQPHKKLRNRRL-LWHGSRLTNFAGILSQGLRIAPPEAPVTG 91

Query: 188 --FGQGIYLSSQLGICLIYSPYSAGWGGSCVGSE-----LSIVSLCSIVD---------D 231
             FG+GIY +            SA +  +          LS V+L  + +          
Sbjct: 92  YMFGKGIYFADDAS-------KSANYCPTDEAHGSGLMLLSEVALGDMNELTKADYAEKL 144

Query: 232 PDQVKCQ--------EDTEEN----RRRALAQDSLGGEVPHKYYVVENSALVKVKYVLVY 279
           P              ED          + +A       + +  YVV N   V+ KY+L  
Sbjct: 145 PPGKHSVKGLGKTAPEDFVWLDGVPLGKPVATGYDSSVLLYNEYVVYNVNQVRPKYLLEV 204

Poly(ADP-ribose) polymerase catalyzes the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. Experiments have shown that a carboxyl 40 kDa fragment is still catalytically active. Length = 206

>gnl|CDD|238651 cd01341, ADP_ribosyl, ADP_ribosylating enzymes catalyze the transfer of ADP_ribose from NAD+ to substrates

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 14/64 (21%)

Query: 160 HAFHGSRLENFHSILNFGLQQHFNKNSL----FGQGIYLSSQLGICLIYSPYSAGWGGSC 215
             FHGS   N  SIL  GL+       L    FG+GIY +            S G+    
Sbjct: 1   FLFHGSPPGNVISILKLGLRPASYGVLLNGGMFGKGIYSAPN-------ISKSNGY---S 50

Query: 216 VGSE 219
           VG +
Sbjct: 51  VGCD 54

Bacterial toxins are cytoplasmic and catalyze the transfer of a single ADP_ribose unit to eukaryotic elongation factor 2, halting protein synthesis and killing the cell. Poly(ADP-ribose) polymerases (PARPS 1-3, VPARP, tankyrase) catalyze the addition of up to 100 ADP_ribose units from NAD+. PARPs 1 and 2 are localized in the nucleaus, bind DNA, and are activated by DNA damage. VPARP is part of the vault ribonucleoprotein complex. Tankyrases regulates telomere length in part through poy(ADP_ribosylation) of telomere repeat binding factor 1 (TRF1). Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. Experiments have shown that a carboxyl 40 kDa fragment is still catalytically active. Length = 137

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	291
PLN03122	815	Poly [ADP-ribose] polymerase; Provisional	99.95
PLN03124	643	poly [ADP-ribose] polymerase; Provisional	99.95
PLN03123	981	poly [ADP-ribose] polymerase; Provisional	99.95
cd01437	347	parp_like Poly(ADP-ribose) polymerase (parp) catal	99.94
PF00644	206	PARP: Poly(ADP-ribose) polymerase catalytic domain	99.85
cd01341	137	ADP_ribosyl ADP_ribosylating enzymes catalyze the	99.59
cd01438	223	tankyrase_like Tankyrases interact with the telome	99.57
cd01439	121	TCCD_inducible_PARP_like Poly(ADP-ribose) polymera	99.46
KOG1037|consensus	531		98.59
PRK00819	179	RNA 2'-phosphotransferase; Reviewed	91.27
PF01885	186	PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA	88.92
PF13151	154	DUF3990: Protein of unknown function (DUF3990)	87.35
COG1859	211	KptA RNA:NAD 2'-phosphotransferase [Translation, r	82.76

>PLN03122 Poly [ADP-ribose] polymerase; Provisional

Probab=99.95  E-value=4.2e-28  Score=249.19  Aligned_cols=200  Identities=16%  Similarity=0.142  Sum_probs=138.1

Q ss_pred             HHHHHHHHHHhCccchhHH-HHHHHHHhhcccccccccC-CCCcccCCCCCCHHHHHH----HhccCCChHHHHHhhhcC
Q psy5396           9 KITELKQILAWNKLGCDIK-WSIFVSACQSYRVSSCLHP-FPPMFIKNQHKDISAVLE----CINQMPLLSSVLHSQRNS   82 (291)
Q Consensus         9 ~~~~l~~~L~~d~~~~Dll-~slf~aAa~S~r~~s~l~P-fP~~~~~~~~kd~d~L~~----~l~~lP~l~~m~~~l~~~   82 (291)
                      .|.+|+++|+.... .+-. -.++..+  |.|++++++. .|| .++    +.+.|..    +|+.|-.|+...+ +...
T Consensus       502 vL~ei~~~l~~~~~-~~~~~~~~~~dl--SnrfYTlIPh~~pp-vi~----~~~~lk~k~~~mLe~L~DIeiA~~-ll~~  572 (815)
T PLN03122        502 VLLEFAEFVKSEKE-TGQKAEAMWLDF--SNKWFSLVHSTRPF-VIR----DIDELADHAASALETVRDINVASR-LIGD  572 (815)
T ss_pred             HHHHHHHHHhcccc-ccchhHHHHHHH--hccceeccCCCCCC-CCC----CHHHHHHHHHHHHHHHHHHHHHHH-HHhh
Confidence            46777777764322 1111 1223333  5599998765 233 333    5555544    3444444433333 2222


Q ss_pred             CCCCCCcchhHHHHHHHHhCCCeEEeCCcc--hHHHHHHhhcCCCCCCC---------ceeeEEEecCCCCchhhhhhhh
Q psy5396          83 HPSPKLCDLIYLLHWLLVEQSPSLEEVPRD--QYDSVLNLVSCEPNVAK---------PDFIFQVQYSPQSSIESNWSKL  151 (291)
Q Consensus        83 ~~~~~~~~~~~LL~Wil~s~~~~l~~l~~~--e~~~l~~~~~~~~~~~~---------p~~iF~V~~~~~~~~e~~F~~~  151 (291)
                      ..   .....+.|+-.+....|.|++|+++  ||..|.+|+..|+.+++         ..-||+|.+.+    +.+|...
T Consensus       573 ~~---~~~~~~pLd~~Y~~L~~~i~pLd~~S~eyk~I~~Yl~nT~~~th~~~~~y~l~v~~IF~veR~g----e~rf~~~  645 (815)
T PLN03122        573 MT---GSTLDDPLSDRYKKLGCSISPVDKESDDYKMIVKYLEKTYEPVKVGDVSYSVSVENIFAVESSA----GPSLDEI  645 (815)
T ss_pred             cc---ccccCCchHHHHHhcCceEEEcCCCCHHHHHHHHHHHhcCCCccccCcccceeEeEEEEeccCc----cccchhh
Confidence            11   1223466777777878999999775  79999999999885554         44589999875    4588876


Q ss_pred             ccCCCceEEEEcCCCchhHHHHHHhccccCC----CCCcccCceeEEeccccccccccCCCCCCCCCCCCccccEEEEEe
Q psy5396         152 SLGRKKILHAFHGSRLENFHSILNFGLQQHF----NKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCS  227 (291)
Q Consensus       152 ~~~~~~~~~afHGS~~~N~~sIL~~GL~~~~----~~~~~~G~GiYls~~~~~S~~ys~~~~~w~~S~~g~~l~~valcE  227 (291)
                      .+..+ ++++|||||+.||.+||++||++++    .+|+|||+||||||++++|++||.+...       ...++|.|||
T Consensus       646 ~~l~N-R~LLWHGSR~tN~~gILsqGLRIAPPEAPvtGYMFGKGIYFAD~~SKSAnYC~t~~~-------~~~GlLlLcE  717 (815)
T PLN03122        646 KKLPN-KVLLWCGTRSSNLLRHLAKGFLPAVCSLPVPGYMFGKAIVCSDAAAEAARYGFTAVD-------RPEGFLVLAV  717 (815)
T ss_pred             cCCCC-ceEEeccchhhhHHHHhhCCCccCCcccCCCCCccCCeeEecchhhhhhhhhccccC-------CCcceEEEEH
Confidence            65567 9999999999999999999999996    4799999999999999999999965432       1257799999


Q ss_pred             eecCC
Q psy5396         228 IVDDP  232 (291)
Q Consensus       228 vv~~p  232 (291)
                      |+...
T Consensus       718 VALG~  722 (815)
T PLN03122        718 ASLGD  722 (815)
T ss_pred             hhcCc
Confidence            97643

>PLN03124 poly [ADP-ribose] polymerase; Provisional

Probab=99.95  E-value=1.3e-27  Score=239.96  Aligned_cols=195  Identities=16%  Similarity=0.248  Sum_probs=136.8

Q ss_pred             HHHHHHHHHHhCccchhHHHHHHHHHhhcccccccccC-C----C-CcccCCCCCCHHHHHHHhccCCChHHH---HHhh
Q psy5396           9 KITELKQILAWNKLGCDIKWSIFVSACQSYRVSSCLHP-F----P-PMFIKNQHKDISAVLECINQMPLLSSV---LHSQ   79 (291)
Q Consensus         9 ~~~~l~~~L~~d~~~~Dll~slf~aAa~S~r~~s~l~P-f----P-~~~~~~~~kd~d~L~~~l~~lP~l~~m---~~~l   79 (291)
                      .|.+|+++|.....      ..+..+  |.||+++++. |    | +..|    .+.+.|.+.++.|..|.+|   .+-+
T Consensus       341 vL~ei~~~l~~~~~------~~l~~l--Sn~FYTlIPH~FG~~~~~~~vI----dt~~~lk~k~elLe~L~DIevA~~ll  408 (643)
T PLN03124        341 VLKRIAEVISRSDR------ETLEEL--SGEFYTVIPHDFGFKKMRQFTI----DTPQKLKHKLEMVEALGEIEIATKLL  408 (643)
T ss_pred             HHHHHHHHHcccch------HHHHHH--hcCeEEecCcccccCCCCcccc----CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36677777754321      223333  5588887643 1    1 1223    2555555544444444444   3322


Q ss_pred             hcCCCCCCCcchhHHHHHHHHhCCCeEEeCCcc--hHHHHHHhhcCCCCCCC------ceeeEEEecCCCCchhhhhhhh
Q psy5396          80 RNSHPSPKLCDLIYLLHWLLVEQSPSLEEVPRD--QYDSVLNLVSCEPNVAK------PDFIFQVQYSPQSSIESNWSKL  151 (291)
Q Consensus        80 ~~~~~~~~~~~~~~LL~Wil~s~~~~l~~l~~~--e~~~l~~~~~~~~~~~~------p~~iF~V~~~~~~~~e~~F~~~  151 (291)
                      . ..    .....+.|.-.+.+..|.|++|+++  ||..|.+|+.+++..++      ..-||+|.+.++   +++|++.
T Consensus       409 ~-~~----~~~~~~pld~~Y~~L~c~i~pLd~~S~efk~I~~Yl~nT~~~th~~y~l~V~~If~V~R~~E---~~rF~~~  480 (643)
T PLN03124        409 K-DD----IGEQDDPLYAHYKRLNCELEPLDTDSEEFSMIAKYLENTHGQTHSGYTLEIVQIFKVSREGE---DERFQKF  480 (643)
T ss_pred             h-hc----cCCCCCcHHHHHHHcCCeeEEcCCCCHHHHHHHHHHHhcCCCccCcCceeEEEEEEeccccc---hhhHHHh
Confidence            2 21    1123356777778888999999775  79999999988875544      355899999876   5899987


Q ss_pred             ccCCCceEEEEcCCCchhHHHHHHhccccCCC----CCcccCceeEEeccccccccccCCCCCCCCCCCCccccEEEEEe
Q psy5396         152 SLGRKKILHAFHGSRLENFHSILNFGLQQHFN----KNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCS  227 (291)
Q Consensus       152 ~~~~~~~~~afHGS~~~N~~sIL~~GL~~~~~----~~~~~G~GiYls~~~~~S~~ys~~~~~w~~S~~g~~l~~valcE  227 (291)
                      ....+ ++|+||||+..||++||++||+++++    +|+|||+|||||+.+++|++||.++..       ...++|+|||
T Consensus       481 ~~~~N-r~LLWHGSr~~N~~gILs~GLriaPpea~~~GymfGkGIYFAd~~skSa~Yc~~~~~-------~~~g~llLce  552 (643)
T PLN03124        481 SSTKN-RMLLWHGSRLTNWTGILSQGLRIAPPEAPSTGYMFGKGVYFADMFSKSANYCYASAA-------NPDGVLLLCE  552 (643)
T ss_pred             hccCC-eEEEEcCCCcccHHHHHhccCccCCcccccccccccceeEecchhhhhhhhhhccCC-------CCeeEEEEEE
Confidence            66567 99999999999999999999998864    689999999999999999999976432       1258899999


Q ss_pred             eecC
Q psy5396         228 IVDD  231 (291)
Q Consensus       228 vv~~  231 (291)
                      |+..
T Consensus       553 VaLG  556 (643)
T PLN03124        553 VALG  556 (643)
T ss_pred             EecC
Confidence            9864

>PLN03123 poly [ADP-ribose] polymerase; Provisional

Probab=99.95  E-value=5.3e-27  Score=245.40  Aligned_cols=200  Identities=18%  Similarity=0.253  Sum_probs=143.1

Q ss_pred             HHHHHHHHHHHhCccchhHHHHHHHHHhhcccccccccC-CCCcccCCCCCCHHHHH---HHhccCCChHHHHHhhhcCC
Q psy5396           8 VKITELKQILAWNKLGCDIKWSIFVSACQSYRVSSCLHP-FPPMFIKNQHKDISAVL---ECINQMPLLSSVLHSQRNSH   83 (291)
Q Consensus         8 ~~~~~l~~~L~~d~~~~Dll~slf~aAa~S~r~~s~l~P-fP~~~~~~~~kd~d~L~---~~l~~lP~l~~m~~~l~~~~   83 (291)
                      ..|.+|+++|+.....-+..-+.+..+  |.|++++++. +|| .++    +.+.|.   ++|+.|-.|+...+ +....
T Consensus       680 ~vL~ei~~~l~~~~~~~~~~~~~l~~l--Sn~fYtlIPh~~pp-~I~----~~~~ik~k~~lLe~L~dieiA~~-ll~~~  751 (981)
T PLN03123        680 EALTEIQNLLKENDQDPSIRESLLVDA--SNRFFTLIPSIHPH-IIR----DEDDLKSKVKMLEALQDIEIASR-LVGFD  751 (981)
T ss_pred             HHHHHHHHHHhcccccchhHHHHHHHH--hhccEecCCCCCCC-cCC----CHHHHHHHHHHHHHHHHHHHHHH-HHhcc
Confidence            347788888876544333333444444  4488988765 344 343    455554   44555444443333 22221


Q ss_pred             CCCCCcchhHHHHHHHHhCCCeEEeCCcc--hHHHHHHhhcCCCCCCC------ceeeEEEecCCCCchhhhhhhhcc-C
Q psy5396          84 PSPKLCDLIYLLHWLLVEQSPSLEEVPRD--QYDSVLNLVSCEPNVAK------PDFIFQVQYSPQSSIESNWSKLSL-G  154 (291)
Q Consensus        84 ~~~~~~~~~~LL~Wil~s~~~~l~~l~~~--e~~~l~~~~~~~~~~~~------p~~iF~V~~~~~~~~e~~F~~~~~-~  154 (291)
                           ....+.|+-.+....|.|++|+++  ||..|.+|+..++.+++      ..-||+|.+.++   .++|.+.+. .
T Consensus       752 -----~~~~~pld~~Y~~L~~~i~~L~~~s~ey~~I~~Yl~nT~~~th~~y~l~v~~IF~v~r~gE---~~rf~~~~~~~  823 (981)
T PLN03123        752 -----VDEDDSLDDKYKKLHCDISPLPHDSEDYKLIEKYLLTTHAPTHTDWSLELEEVFSLEREGE---FDKYAPYKEKL  823 (981)
T ss_pred             -----CcCCCchHHHHHhcCCeEEECCCCCHHHHHHHHHHHhcCCCccccccceeeEEEEeccccc---ccchhhHhhcC
Confidence                 123567777888888999999775  79999999988875554      556899999876   488887643 3


Q ss_pred             CCceEEEEcCCCchhHHHHHHhccccCC----CCCcccCceeEEeccccccccccCCCCCCCCCCCCccccEEEEEeeec
Q psy5396         155 RKKILHAFHGSRLENFHSILNFGLQQHF----NKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVD  230 (291)
Q Consensus       155 ~~~~~~afHGS~~~N~~sIL~~GL~~~~----~~~~~~G~GiYls~~~~~S~~ys~~~~~w~~S~~g~~l~~valcEvv~  230 (291)
                      .+ ++++|||||..||.+||++||++++    .+|+|||+||||||.+++|++||.++..       ...++|.||||+.
T Consensus       824 ~N-r~LLwHGSr~~N~~gILs~GLriaPpeap~tGymfGkGIYFAD~~SKSanYc~~~~~-------~~~g~llLceVaL  895 (981)
T PLN03123        824 KN-RMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGVYFADLVSKSAQYCYTDRK-------NPVGLMLLSEVAL  895 (981)
T ss_pred             CC-ceEEEcCCCcccHHHHhhccCccCCccccccCccccceeEecchhhhhhhhhcccCC-------CCceEEEEEEEec
Confidence            56 9999999999999999999999885    4799999999999999999999976432       1257899999986


Q ss_pred             C
Q psy5396         231 D  231 (291)
Q Consensus       231 ~  231 (291)
                      .
T Consensus       896 G  896 (981)
T PLN03123        896 G  896 (981)
T ss_pred             C
Confidence            4

>cd01437 parp_like Poly(ADP-ribose) polymerase (parp) catalytic domain catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA

Probab=99.94  E-value=4.1e-26  Score=216.47  Aligned_cols=200  Identities=18%  Similarity=0.202  Sum_probs=136.5

Q ss_pred             HHHHHHHHHHHHhCccchhHHHHHHHHHhhcccccccccCCCCcccCCC---CCCHHHHHHHhccCCChHHHH---Hhhh
Q psy5396           7 DVKITELKQILAWNKLGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKNQ---HKDISAVLECINQMPLLSSVL---HSQR   80 (291)
Q Consensus         7 ~~~~~~l~~~L~~d~~~~Dll~slf~aAa~S~r~~s~l~PfP~~~~~~~---~kd~d~L~~~l~~lP~l~~m~---~~l~   80 (291)
                      .+.|.+|+++|......    -.-+..+  |.|++++   +|+.|....   ..+.+.|.+.++.|-.|.+|.   +-+.
T Consensus        49 ~~vL~~i~~~l~~~~~~----~~~l~~l--s~~FYtl---IPh~fg~~~p~~i~~~~~l~~k~~lle~L~die~a~~l~~  119 (347)
T cd01437          49 YEVLKEIEEALKRGSSQ----GSQLEEL--SNEFYTL---IPHDFGMSKPPVIDNEELLKAKRELLEALRDIEIASKLLK  119 (347)
T ss_pred             HHHHHHHHHHHhccccc----hHHHHHH--HHHHHHh---CCccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34477777777765442    1112222  3366665   556653321   235555544444444444443   2221


Q ss_pred             cCCCCCCCcchhHHHHHHHHhCCCeEEeCCcc--hHHHHHHhhcCCCCC-----CCceeeEEEecCCCCchhhhhhhhcc
Q psy5396          81 NSHPSPKLCDLIYLLHWLLVEQSPSLEEVPRD--QYDSVLNLVSCEPNV-----AKPDFIFQVQYSPQSSIESNWSKLSL  153 (291)
Q Consensus        81 ~~~~~~~~~~~~~LL~Wil~s~~~~l~~l~~~--e~~~l~~~~~~~~~~-----~~p~~iF~V~~~~~~~~e~~F~~~~~  153 (291)
                      ...     ....+.|.-.+.+..|.+.+++++  ||+.|.+++..++..     ...+.||+|++..+   .++|++.++
T Consensus       120 ~~~-----~~~~~pld~~Y~~L~~~i~~L~~~s~ey~~I~~y~~~t~~~~~~~~~~V~~If~i~r~~e---~~~F~~~~~  191 (347)
T cd01437         120 DDE-----DDSDDPLDANYEKLKCKIEPLDKDSEEYKIIEKYLKNTHAPTTEYTVEVQEIFRVEREGE---TDRFKPFKK  191 (347)
T ss_pred             hcc-----cCCCCcchhHHHHcCeeEEECCCCChHHHHHHHHHHhcCCCCCCcceeEEEEEEecCCCc---hhhhHHhhc
Confidence            111     122345555666777899999775  799999999876643     44567999988765   589997666


Q ss_pred             CCCceEEEEcCCCchhHHHHHHhccccCC----CCCcccCceeEEeccccccccccCCCCCCCCCCCCccccEEEEEeee
Q psy5396         154 GRKKILHAFHGSRLENFHSILNFGLQQHF----NKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIV  229 (291)
Q Consensus       154 ~~~~~~~afHGS~~~N~~sIL~~GL~~~~----~~~~~~G~GiYls~~~~~S~~ys~~~~~w~~S~~g~~l~~valcEvv  229 (291)
                      ..+ ++++||||+..||.+||++||+.++    .+|+|||+|||||+++++|++||.++..       ...++|+||||+
T Consensus       192 ~~n-~~lLwHGsr~~n~~~Il~~Gl~~~~~~~~~~g~mfGkGIYFAd~~skS~~Y~~~~~~-------~~~~~mlLc~V~  263 (347)
T cd01437         192 LGN-RKLLWHGSRLTNFVGILSQGLRIAPPEAPVTGYMFGKGIYFADMFSKSANYCHASAS-------DPTGLLLLCEVA  263 (347)
T ss_pred             cCC-eEEEEcCCChhhHHHHHhcCCCcCccccccCCccccceEeecCchHhhhhhcccCCC-------CCceEEEEEEEe
Confidence            667 9999999999999999999999875    4688999999999999999999976542       136889999998


Q ss_pred             cC
Q psy5396         230 DD  231 (291)
Q Consensus       230 ~~  231 (291)
                      ..
T Consensus       264 lG  265 (347)
T cd01437         264 LG  265 (347)
T ss_pred             cC
Confidence            64

Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. Experiments have shown that a carboxyl 40 kDa fragment is still catalytically active. Poly(ADP-ribose)-like polymerases (PARPS 1-3, VPARP, tankyrase) catalyze the addition of up to 100 ADP_ribose units from NAD+. PARPs 1 and 2 are localized in the nucleaus, bind DNA, and are activated by DNA damage. VPARP is part of the vault ribonucleoprotein complex. Tankyrases regulates telomere length through interactions with telomere repeat binding factor 1.

>PF00644 PARP: Poly(ADP-ribose) polymerase catalytic domain; InterPro: IPR012317 Poly(ADP-ribose) polymerases (PARP) are a family of enzymes present in eukaryotes, which catalyze the poly(ADP-ribosyl)ation of a limited number of proteins involved in chromatin architecture, DNA repair, or in DNA metabolism, including PARP itself

Probab=99.85  E-value=2e-21  Score=172.04  Aligned_cols=167  Identities=21%  Similarity=0.290  Sum_probs=114.3

Q ss_pred             CCeEEeCCcc--hHHHHHHhhcCCCC-----CCCceeeEEEecCCCCchhhhhhhhccCCCceEEEEcCCCchhHHHHHH
Q psy5396         103 SPSLEEVPRD--QYDSVLNLVSCEPN-----VAKPDFIFQVQYSPQSSIESNWSKLSLGRKKILHAFHGSRLENFHSILN  175 (291)
Q Consensus       103 ~~~l~~l~~~--e~~~l~~~~~~~~~-----~~~p~~iF~V~~~~~~~~e~~F~~~~~~~~~~~~afHGS~~~N~~sIL~  175 (291)
                      .|.|+.|+++  ||+.|.++...+.+     ......||+|+... .  .++|...++..+ .+++|||++.+||.+||+
T Consensus         2 ~~~l~~l~~~s~ey~~I~~~f~~~~~~~~~~~~~I~~I~~i~~~~-~--~~~f~~~~~~~n-~~~L~HGt~~~~~~~I~~   77 (206)
T PF00644_consen    2 NCELVPLEPDSEEYKEIEKYFKKTWKPVHKYKPKIKKIFRIQNPS-L--WERFEEKKKEGN-ERLLFHGTSAENICSILR   77 (206)
T ss_dssp             TEEEEEEETTSHHHHHHHHHHHHTSTSTTTEEEEEEEEEEEEEHH-H--HHHHHHHHHSSS-EEEEEEEETGGGHHHHHH
T ss_pred             CCEEEEcCCCCHHHHHHHHHHHhHCCCCCCCCCEEEEEEEEcChh-H--HHHHHHHHhcCC-ceEEeCCCChhhccchhc
Confidence            4778888654  78898888765433     34456678887753 2  689998877667 999999999999999999


Q ss_pred             hccccCC----CCCcccCceeEEeccccccccccCCCCCCCCCCCCccccEEEEEeeecCC--------------Cccee
Q psy5396         176 FGLQQHF----NKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDDP--------------DQVKC  237 (291)
Q Consensus       176 ~GL~~~~----~~~~~~G~GiYls~~~~~S~~ys~~~~~w~~S~~g~~l~~valcEvv~~p--------------~~~~~  237 (291)
                      +||++..    .+|.+||+|||||+++++|..||..+..++       .++|.||+|+...              .++.+
T Consensus        78 ~G~~~~~~~~~~~g~~fG~GiYfs~~~s~s~~Y~~~~~~~g-------~~~~llc~V~lG~~~~~~~~~~~~~~~~g~~s  150 (206)
T PF00644_consen   78 NGFKIDPRKASRNGGMFGKGIYFSDNSSKSAQYSKPSDSNG-------ERFMLLCRVALGKPYELKNDNPMTSPPPGYDS  150 (206)
T ss_dssp             HSS---TTTSCGGCSTTSSSEEEBSSHHHHHTTSTSESSSS-------EEEEEEEEEEECSEEEESSCCTGSSGCTTESE
T ss_pred             CCCccCccccccCCceeeeEEEeCcchhhhcccCCCccCCc-------ceeeeEEEEEeccceeeccCcccccccCCcce
Confidence            9996532    246799999999999999999998744322       4678888887543              11111


Q ss_pred             cccchh-hH-----------hhhhhccCCCCCcCCeEEEEecCCeeEEEEEEEEe
Q psy5396         238 QEDTEE-NR-----------RRALAQDSLGGEVPHKYYVVENSALVKVKYVLVYT  280 (291)
Q Consensus       238 ~~~~~~-~~-----------~~~~~~~~~~~~~p~~y~VV~n~~~v~~rYLlvy~  280 (291)
                      ...... .+           .........+.......|||.|++++++|||+.|.
T Consensus       151 v~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~eyVVy~~~q~~p~YLi~y~  205 (206)
T PF00644_consen  151 VKGVGSKTPEDTIDEDGVPSGKGYVSEYDGSSLNPNEYVVYDNSQVYPEYLITYK  205 (206)
T ss_dssp             EEECESEEEGGEEEETTETTSSEEESCEESSSSSCSEEEESSGGGEEEEEEEEEE
T ss_pred             ecCCCccCCccccccCCCCCCCCccCccCCCccCCCEEEEEcccceeeEEEEEEE
Confidence            100000 00           00001111223355677999999999999999985

PARP, also known as poly(ADP-ribose) synthetase and poly(ADP-ribose) transferase, transfers the ADP-ribose moiety from its substrate, nicotinamide adenine dinucleotide (NAD), to carboxylate groups of aspartic and glutamic residues. Whereas some PARPs might function in genome protection, others appear to play different roles in the cell, including telomere replication and cellular transport. PARP-1 is a multifunctional enzyme. The polypeptide has a highly conserved modular organisation consisting of an N-terminal DNA-binding domain, a central regulating segment, and a C-terminal or F region accommodating the catalytic centre. The F region is composed of two parts: a purely alpha-helical N- terminal domain (alpha-hd), and the mixed alpha/beta C-terminal catalytic domain bearing the putative NAD binding site. Although proteins of the PARP family are related through their PARP catalytic domain, they do not resemble each other outside of that region, but rather, they contain unique domains that distinguish them from each other and hint at their discrete functions. Domains with which the PARP catalytic domain is found associated include zinc fingers, SAP, ankyrin, BRCT, Macro, SAM, WWE and UIM domains [, , ]. The alpha-hd domain is about 130 amino acids in length and consists of an up-up-down-up-down-down motif of helices. It is thought to relay the activation signal issued on binding to damaged DNA [, ]. The PARP catalytic domain is about 230 residues in length. Its core consists of a five-stranded antiparallel beta-sheet and four-stranded mixed beta-sheet. The two sheets are consecutive and are connected via a single pair of hydrogen bonds between two strands that run at an angle of 90 degrees. These central beta-sheets are surrounded by five alpha-helices, three 3(10)-helices, and by a three- and a two-stranded beta-sheet in a 37-residue excursion between two central beta-strands [, ]. The active site, known as the 'PARP signature' is formed by a block of 50 amino acids that is strictly conserved among the vertebrates and highly conserved among all species. The 'PARP signature' is characteristic of all PARP protein family members. It is formed by a segment of conserved amino acid residues formed by a beta-sheet, an alpha-helix, a 3(10)-helix, a beta-sheet, and an alpha-helix [].; GO: 0003950 NAD+ ADP-ribosyltransferase activity; PDB: 2PQF_F 4F0D_A 1PAX_A 1EFY_A 1A26_A 2PAW_A 4PAX_A 3PAX_A 2PAX_A 3P0N_A ....

>cd01341 ADP_ribosyl ADP_ribosylating enzymes catalyze the transfer of ADP_ribose from NAD+ to substrates

Probab=99.59  E-value=9.9e-16  Score=127.85  Aligned_cols=74  Identities=26%  Similarity=0.313  Sum_probs=57.5

Q ss_pred             EEEcCCCchhHHHHHHhccccCCCC----CcccCceeEEeccccccccccCCCCCC-CC--------CCCCccccEEEEE
Q psy5396         160 HAFHGSRLENFHSILNFGLQQHFNK----NSLFGQGIYLSSQLGICLIYSPYSAGW-GG--------SCVGSELSIVSLC  226 (291)
Q Consensus       160 ~afHGS~~~N~~sIL~~GL~~~~~~----~~~~G~GiYls~~~~~S~~ys~~~~~w-~~--------S~~g~~l~~valc  226 (291)
                      |+||||+.+||++|+++||+.++..    |.+||+|||||++.++|..||..+.+= ..        ++-+...+++++|
T Consensus         1 ~l~HGs~~~n~~~I~~~Gl~~~~~~~~~~g~~~G~GiYfa~~~s~S~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~   80 (137)
T cd01341           1 FLFHGSPPGNVISILKLGLRPASYGVLLNGGMFGKGIYSAPNISKSNGYSVGCDGQHVFQNGKPKVCGRELCVFGFLTLG   80 (137)
T ss_pred             CccccCCccchHHHhhCCCCCCCccccccccccCceeeecCChHHhhhhhcccCCcccccccccccccccccceeEEEEE
Confidence            6899999999999999999987643    789999999999999999999876420 00        0001235889999


Q ss_pred             eeecCCC
Q psy5396         227 SIVDDPD  233 (291)
Q Consensus       227 Evv~~p~  233 (291)
                      +|...-.
T Consensus        81 ~v~~~~~   87 (137)
T cd01341          81 VMSGATE   87 (137)
T ss_pred             Eeccccc
Confidence            9876443

Bacterial toxins are cytoplasmic and catalyze the transfer of a single ADP_ribose unit to eukaryotic elongation factor 2, halting protein synthesis and killing the cell. Poly(ADP-ribose) polymerases (PARPS 1-3, VPARP, tankyrase) catalyze the addition of up to 100 ADP_ribose units from NAD+. PARPs 1 and 2 are localized in the nucleaus, bind DNA, and are activated by DNA damage. VPARP is part of the vault ribonucleoprotein complex. Tankyrases regulates telomere length in part through poy(ADP_ribosylation) of telomere repeat binding factor 1 (TRF1). Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region o

>cd01438 tankyrase_like Tankyrases interact with the telomere reverse transcriptase complex (TERT)

Probab=99.57  E-value=6.1e-14  Score=125.26  Aligned_cols=121  Identities=17%  Similarity=0.199  Sum_probs=78.3

Q ss_pred             eEEEEcCCCchhHHHHHHhccccC-CCCCcccCceeEEeccccccccccCCC---C-CCCCCC--CCccccEEEEEeeec
Q psy5396         158 ILHAFHGSRLENFHSILNFGLQQH-FNKNSLFGQGIYLSSQLGICLIYSPYS---A-GWGGSC--VGSELSIVSLCSIVD  230 (291)
Q Consensus       158 ~~~afHGS~~~N~~sIL~~GL~~~-~~~~~~~G~GiYls~~~~~S~~ys~~~---~-~w~~S~--~g~~l~~valcEvv~  230 (291)
                      .+++|||++.-|  +|+++|++.- ..+|.|||+|||||++.++|.+||...   . +..+..  +-...+.|.||||+-
T Consensus        89 e~~LfHGt~~~~--~I~~~GFd~r~~~~g~~fGkGiYFA~~askS~~Y~~~~~~~~~~p~~~~~~~~~~~~~MfLcrVlL  166 (223)
T cd01438          89 ERMLFHGSPFIN--AIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYVCHRQMLFCRVTL  166 (223)
T ss_pred             eEEEeecCcchh--HHHHhCCCccccccCceeeeeeeeccchhhhccccccccccccCcccccccccccceeEEEEEEEe
Confidence            889999999877  8999999632 245789999999999999999999652   1 111110  101147899999987


Q ss_pred             CCCcceeccc---chhhHhhh--hhccCCCCCcCCeEEEEecCCeeEEEEEEEEecC
Q psy5396         231 DPDQVKCQED---TEENRRRA--LAQDSLGGEVPHKYYVVENSALVKVKYVLVYTRH  282 (291)
Q Consensus       231 ~p~~~~~~~~---~~~~~~~~--~~~~~~~~~~p~~y~VV~n~~~v~~rYLlvy~~~  282 (291)
                      ... +.....   ++..+...  .+..+.++ .-.+.|||.+.+++.++||+.|...
T Consensus       167 Gk~-~~~~~~~~~~~~P~G~dSv~g~Ps~~~-~~~~EfVVyd~~Q~YPeYLI~y~~~  221 (223)
T cd01438         167 GKS-FLQFSAMKMAHAPPGHHSVIGRPSVNG-LAYAEYVIYRGEQAYPEYLITYQIV  221 (223)
T ss_pred             cce-eeccCCcccCCCCCCCcceEcCCCCCC-cccCEEEEECCCcEeeEEEEEEEee
Confidence            653 211100   00000000  01122222 2235699999999999999999753

Tankyrase 1 poly-ADP-ribosylates Telomere Repeat Binding Factor 1 (TRF1) while Tankyrase 2 can poly-ADP-ribosylate itself or TRF1. The tankyrases also contain multiple ankyrin repeats that mediate protein-protein interaction (binding TRF1 and insulin-responsive aminopeptidase) and may function as a complex. Overexpression of Tank1 promotes increased telomere length when overexpressed, while overexpressed Tank2 has been shown to promote PARP cleavage- independent cell death (necrosis).

>cd01439 TCCD_inducible_PARP_like Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA

Probab=99.46  E-value=1.3e-13  Score=112.75  Aligned_cols=112  Identities=18%  Similarity=0.320  Sum_probs=75.7

Q ss_pred             EEEcCCCchhHHHHHHhccccCCC--CCcccCceeEEeccccccccccCCCCCCCCCCCCccccEEEEEeeecCCCccee
Q psy5396         160 HAFHGSRLENFHSILNFGLQQHFN--KNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKC  237 (291)
Q Consensus       160 ~afHGS~~~N~~sIL~~GL~~~~~--~~~~~G~GiYls~~~~~S~~ys~~~~~w~~S~~g~~l~~valcEvv~~p~~~~~  237 (291)
                      ++|||++.++|.+|+++|++..+.  .+.+||+|||||++.++|.+||..... .     ...+.|.||+|+...- ...
T Consensus         1 ~LfHGt~~~~~~~I~~~GF~~~~~g~~~~~~G~GiYFA~~~s~S~~Y~~~~~~-~-----~g~~~mfL~rVl~G~~-~~~   73 (121)
T cd01439           1 LLFHGTSADAVEAICRHGFDRRFCGKHGTMYGKGSYFAKNASYSHQYSKKSPK-A-----DGLKEMFLARVLTGDY-TQG   73 (121)
T ss_pred             CcccccChhhHHHHHHccCCCccCCCCCCccCCeeecccChhhhhcccccCcC-C-----CCcEEEEEEEEEecce-ecC
Confidence            479999999999999999998753  268999999999999999999965431 0     1258899999987431 110


Q ss_pred             cccc-----hhhHhhhhhccCCCC--CcCCeEEEEecCCeeEEEEEEEE
Q psy5396         238 QEDT-----EENRRRALAQDSLGG--EVPHKYYVVENSALVKVKYVLVY  279 (291)
Q Consensus       238 ~~~~-----~~~~~~~~~~~~~~~--~~p~~y~VV~n~~~v~~rYLlvy  279 (291)
                      ..+.     .....-....+|.-+  ..| +.|||.+..++-+.||+.|
T Consensus        74 ~~~~~~pP~~~~~~~~~~yDS~vd~~~~p-~~~Vvf~~~q~yPeYlI~y  121 (121)
T cd01439          74 HPGYRRPPLKPSGVELDRYDSCVDNVSNP-SIFVIFSDVQAYPEYLITY  121 (121)
T ss_pred             CCcccCCCCccCCCCCCCccceeCCCCCC-CEEEEEeCCccceeEEEEC
Confidence            0000     000000011222222  124 4689999999999999876

Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) causes pleotropic effects in mammalian species through modulating gene expression. TCCD indicible PARP (TiPARP) is a target of TCDD that may contribute to multiple responses to TCDD by modulating protein function through poly ADP-ribosylation

>KOG1037|consensus

Probab=98.59  E-value=8.9e-09  Score=103.19  Aligned_cols=121  Identities=19%  Similarity=0.259  Sum_probs=81.8

Q ss_pred             CCCeEEeCCcc--hHHHHHHhhcCCCCCCC---ceeeEEEecCCCCchhhhhhhhccCCCceEEEEcCCCchhHHHHHHh
Q psy5396         102 QSPSLEEVPRD--QYDSVLNLVSCEPNVAK---PDFIFQVQYSPQSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNF  176 (291)
Q Consensus       102 ~~~~l~~l~~~--e~~~l~~~~~~~~~~~~---p~~iF~V~~~~~~~~e~~F~~~~~~~~~~~~afHGS~~~N~~sIL~~  176 (291)
                      ..|.+..++.+  |+..+..++-.++....   +-.++.|....+...+.+|..-....+ ..++||||+..||.+||..
T Consensus       307 l~c~~~~~~~~~~e~kmi~~~~~~~~~~~~~~~~~~~~~l~k~~~~~e~~~~~~~~~~~~-r~llw~gs~~~n~a~~l~~  385 (531)
T KOG1037|consen  307 LKCKIEKLDKDSEEFKMIAQYVEKTHAKTSTVKVVQIADLKKVNEKNEADRKVDISELIN-RQLLWHGSRFGNLAGILSP  385 (531)
T ss_pred             hhhhhccccccchhHHHHHHHHHhhccccCccCceeehhHHHhhhcccccccccCccccc-ccchhcccceeeeeccccC
Confidence            46777777773  78888877766543322   222332222222211345554444455 8899999999999999999


Q ss_pred             ccccCCCC----CcccCceeEEeccccccccccCCCCCCCCCCCCccccEEEEEeeec
Q psy5396         177 GLQQHFNK----NSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVD  230 (291)
Q Consensus       177 GL~~~~~~----~~~~G~GiYls~~~~~S~~ys~~~~~w~~S~~g~~l~~valcEvv~  230 (291)
                      |++.+++.    |++||+||||++..++|.+||.+..  .     .....+.+|+++.
T Consensus       386 g~~~~~~~~~~~g~~~gkgiyfa~~~sks~~y~~~~~--~-----k~~~~ll~~~~al  436 (531)
T KOG1037|consen  386 GLRLAPSEAPVTGYMFGKGIYFADAASKSANYCVTMK--G-----KPTGHLLLCDVAL  436 (531)
T ss_pred             CceecCCCCCceeeccccceEeeeecccccccccccc--c-----Cchhhhhhhhhhc
Confidence            99988654    7899999999999999999996543  2     1234455555554

>PRK00819 RNA 2'-phosphotransferase; Reviewed

Probab=91.27  E-value=0.21  Score=43.66  Aligned_cols=37  Identities=27%  Similarity=0.375  Sum_probs=30.3

Q ss_pred             EEEEcCCCchhHHHHHHhccccCCCCCcccCceeEEecccccc
Q psy5396         159 LHAFHGSRLENFHSILNFGLQQHFNKNSLFGQGIYLSSQLGIC  201 (291)
Q Consensus       159 ~~afHGS~~~N~~sIL~~GL~~~~~~~~~~G~GiYls~~~~~S  201 (291)
                      ..+|||+..++|-+|+..||..|.      -.-|.||++..++
T Consensus        95 ~~lyHGT~~~~~~~I~~~GL~pm~------R~hVHLs~~~~~a  131 (179)
T PRK00819         95 AVLYHGTSSEELDSILEEGLKPMK------RHYVHLSTDIETA  131 (179)
T ss_pred             ceeEeCCCHHHHHHHHHhCCCccC------CCeEEecCCcccC
Confidence            378999999999999999998542      2468999887655

>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate

Probab=88.92  E-value=0.37  Score=42.31  Aligned_cols=38  Identities=24%  Similarity=0.226  Sum_probs=24.6

Q ss_pred             eEEEEcCCCchhHHHHHHhccccCCCCCcccCceeEEecccccc
Q psy5396         158 ILHAFHGSRLENFHSILNFGLQQHFNKNSLFGQGIYLSSQLGIC  201 (291)
Q Consensus       158 ~~~afHGS~~~N~~sIL~~GL~~~~~~~~~~G~GiYls~~~~~S  201 (291)
                      -..+|||+..++|-+|+..||..|      -.+.|.||.+...+
T Consensus       105 p~~lyHGT~~~~~~~I~~~GL~~m------~R~hVHls~~~~~a  142 (186)
T PF01885_consen  105 PPILYHGTYRKAWPSILEEGLKPM------GRNHVHLSTGPETA  142 (186)
T ss_dssp             -SEEEE--BGGGHHHHHHH-B---------SSSSEEEES-HHHH
T ss_pred             CCEEEEccchhhHHHHHHhCCCCC------CCCEEEEeeccCCc
Confidence            458999999999999999999853      34579999884433

Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.

>PF13151 DUF3990: Protein of unknown function (DUF3990)

Probab=87.35  E-value=0.25  Score=42.14  Aligned_cols=61  Identities=21%  Similarity=0.282  Sum_probs=38.1

Q ss_pred             EEEEcCCCchhHHHHHHhccccCCCCCcccCceeEEeccccccccccCCCCCCCCCCCCccccEEEEEeeecC
Q psy5396         159 LHAFHGSRLENFHSILNFGLQQHFNKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDD  231 (291)
Q Consensus       159 ~~afHGS~~~N~~sIL~~GL~~~~~~~~~~G~GiYls~~~~~S~~ys~~~~~w~~S~~g~~l~~valcEvv~~  231 (291)
                      |.+||||..     ++..--..+.....=||+|.|++++.+.|..++...   .++    .-.+|.+-|+-..
T Consensus         1 M~LYHGS~~-----~i~~pd~~~~r~~~DFG~GFY~T~~~~qA~~wA~~~---~~~----~~~~v~~Y~~~~~   61 (154)
T PF13151_consen    1 MILYHGSNQ-----IIEKPDLSKGRPNLDFGKGFYLTTDKEQAKRWAKRK---RNG----GDPIVNVYEFDED   61 (154)
T ss_pred             CEeecCCCc-----cccCceeccCcccCccCceeEcccCHHHHHHHHHhc---ccC----CCCEEEEEEEecc
Confidence            468999974     233221111233457999999999999998887554   111    1355666666543

>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]

Probab=82.76  E-value=1.1  Score=40.10  Aligned_cols=39  Identities=26%  Similarity=0.276  Sum_probs=29.5

Q ss_pred             eEEEEcCCCchhHHHHHHhccccCCCCCcccCceeEEeccccccc
Q psy5396         158 ILHAFHGSRLENFHSILNFGLQQHFNKNSLFGQGIYLSSQLGICL  202 (291)
Q Consensus       158 ~~~afHGS~~~N~~sIL~~GL~~~~~~~~~~G~GiYls~~~~~S~  202 (291)
                      .-.+|||+..++|.+|+++||..|.-      .-|=||.+..+|.
T Consensus       120 p~~LyhGTs~~~l~~I~~~Gi~Pm~R------~~VHLS~~~~~A~  158 (211)
T COG1859         120 PAVLYHGTSPEFLPSILEEGLKPMKR------RHVHLSADYETAK  158 (211)
T ss_pred             CcEEEecCChhhhHHHHHhcCccccC------ceEEecCCHHHHH
Confidence            45889999999999999999986422      2456666666554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	291
4f0d_A	277	Human Artd15PARP16 IN COMPLEX WITH 3-Aminobenzamide		5e-50

>pdb|4F0D|A Chain A, Human Artd15PARP16 IN COMPLEX WITH 3-Aminobenzamide Length = 277

Iteration: 1
 Score =  194 bits (493), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 105/273 (38%), Positives = 169/273 (61%), Gaps = 14/273 (5%)
Query: 14  KQILAWNKLGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKNQHKDISAVLECINQMPLLS 73
           ++    + L  D++ S+F SA QSY+  S L PFP  + +   KD  A+L   +++P L 
Sbjct: 8   REAAGRDMLAADLRCSLFASALQSYKRDSVLRPFPASYARGDCKDFEALLADASKLPNLK 67
Query: 74  SVLHSQRNSHPSPKLCDLIYLLHWLLVEQSPSLEEVPRDQYDSVLNLVSC-EPNVAKPDF 132
            +L S  ++H   +  DL+    W+L  +  ++    + +++ +  L       V  PDF
Sbjct: 68  ELLQSSGDNHK--RAWDLV---SWILSSKVLTIHSAGKAEFEKIQKLTGAPHTPVPAPDF 122
Query: 133 IFQVQYSPQSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNFGLQQHFNKNSLFGQGI 192
           +F+++Y   ++ +   +K   G + +++AFHGSRLENFHSI++ GL  H NK SLFG+G 
Sbjct: 123 LFEIEYFDPANAKFYETK---GERDLIYAFHGSRLENFHSIIHNGLHCHLNKTSLFGEGT 179
Query: 193 YLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQ---EDTEE-NRRRA 248
           YL+S L + LIYSP+  GW  S +G  LS V++C ++D PD VKCQ   +D++E +RRRA
Sbjct: 180 YLTSDLSLALIYSPHGHGWQHSLLGPILSCVAVCEVIDHPD-VKCQTKKKDSKEIDRRRA 238
Query: 249 LAQDSLGGEVPHKYYVVENSALVKVKYVLVYTR 281
             + S GG++P KY+VV N+ L++VKY+LVY++
Sbjct: 239 RIKHSEGGDIPPKYFVVTNNQLLRVKYLLVYSQ 271

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	291
4f0d_A	277	PARP-16, poly [ADP-ribose] polymerase 16; transfer	2e-60
1efy_A	350	Poly (ADP-ribose) polymerase; benzimidazole, inhib	5e-07
4dqy_C	506	Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-rib	5e-05
3c4h_A	357	Poly(ADP-ribose) polymerase 3; enzyme-inhibitor co	9e-05
3kjd_A	368	Poly [ADP-ribose] polymerase 2; transferase, enzym	1e-04
2pqf_A	198	Poly [ADP-ribose] polymerase 12; enzyme-inhibitor	4e-04

>4f0d_A PARP-16, poly [ADP-ribose] polymerase 16; transferase, ARTD15, structural genomics structural genomics consortium, SGC; HET: 3AB; 2.70A {Homo sapiens} Length = 277

 Score =  192 bits (488), Expect = 2e-60
 Identities = 100/278 (35%), Positives = 162/278 (58%), Gaps = 12/278 (4%)

Query: 11  TELKQILAWNKLGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKNQHKDISAVLECINQMP 70
              ++    + L  D++ S+F SA QSY+  S L PFP  + +   KD  A+L   +++P
Sbjct: 5   AAAREAAGRDMLAADLRCSLFASALQSYKRDSVLRPFPASYARGDCKDFEALLADASKLP 64

Query: 71  LLSSVLHSQRNSHPSPKLCDLIYLLHWLLVEQSPSLEEVPRDQYDSVLNLVSC-EPNVAK 129
            L  +L S  ++H          L+ W+L  +  ++    + +++ +  L       V  
Sbjct: 65  NLKELLQSSGDNHKRA-----WDLVSWILSSKVLTIHSAGKAEFEKIQKLTGAPHTPVPA 119

Query: 130 PDFIFQVQYSPQSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNFGLQQHFNKNSLFG 189
           PDF+F+++Y   +   + + +   G + +++AFHGSRLENFHSI++ GL  H NK SLFG
Sbjct: 120 PDFLFEIEYFDPA--NAKFYETK-GERDLIYAFHGSRLENFHSIIHNGLHCHLNKTSLFG 176

Query: 190 QGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPD---QVKCQEDTEENRR 246
           +G YL+S L + LIYSP+  GW  S +G  LS V++C ++D PD   Q K ++  E +RR
Sbjct: 177 EGTYLTSDLSLALIYSPHGHGWQHSLLGPILSCVAVCEVIDHPDVKCQTKKKDSKEIDRR 236

Query: 247 RALAQDSLGGEVPHKYYVVENSALVKVKYVLVYTRHKV 284
           RA  + S GG++P KY+VV N+ L++VKY+LVY++   
Sbjct: 237 RARIKHSEGGDIPPKYFVVTNNQLLRVKYLLVYSQKPP 274

>1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic fragment, transferase; HET: BZC; 2.20A {Gallus gallus} SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A 2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A* 2rd6_A* 3gjw_A* 3gn7_A* 3l3l_A* 3l3m_A* Length = 350

 Score = 49.3 bits (117), Expect = 5e-07
 Identities = 46/262 (17%), Positives = 78/262 (29%), Gaps = 36/262 (13%)

Query: 49  PMFIKNQH--KDISAVLECINQMPLLSSVLHSQRNSHPSPKLCDLIYLLHWLLVEQSPSL 106
           P  + N    +    +L+ +  + +  S+L           +      L   +       
Sbjct: 88  PPLLSNLEYIQAKVQMLDNLLDIEVAYSLLRGGNEDGDKDPIDINYEKLRTDIKVVDKDS 147

Query: 107 EEVPRDQYDSVLNLV--SCEPNVAKPDFIFQVQYSPQSSIESNWSKLSLGRKKILHAFHG 164
           EE        +   V  +        D      +  +   ES   K           +HG
Sbjct: 148 EE-----AKIIKQYVKNTHAATHNAYDLKVVEIFRIEREGESQRYKPFKQLHNRQLLWHG 202

Query: 165 SRLENFHSILNFGLQQHFNKNS----LFGQGIYLSSQLGICLIYSPYSAGWGGSC----- 215
           SR  NF  IL+ GL+    +      +FG+GIY +  +     Y   S            
Sbjct: 203 SRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQADPIGLILLGE 262

Query: 216 --VGSELSIVSLCSIVDDP---DQVKCQEDTEENRRRALAQDS----LGGEVPHKY---- 262
             +G+   + +   I   P     VK    T  +       D     LG  +        
Sbjct: 263 VALGNMYELKNASHITKLPKGKHSVKGLGKTAPDPTATTTLDGVEVPLGNGISTGINDTC 322

Query: 263 -----YVVENSALVKVKYVLVY 279
                Y+V + A V +KY+L  
Sbjct: 323 LLYNEYIVYDVAQVNLKYLLKL 344

>4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase, DNA binding protein, ADP- transferase, PARP-like zinc finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo sapiens} PDB: 2cr9_A Length = 506

 Score = 43.3 bits (101), Expect = 5e-05
 Identities = 48/275 (17%), Positives = 86/275 (31%), Gaps = 36/275 (13%)

Query: 48  PPMFIKNQH--KDISAVLECINQMPLLSSVLHSQRNSHPSPKLCDLIYLLHWLLVEQSPS 105
            P  + N    +  + +L+ +  + +  S+L    +      +      L   +      
Sbjct: 232 KPPLLNNADSVQAKAEMLDNLLDIEVAYSLLRGGSDDSSKDPIDVNYEKLKTDIKVVDRD 291

Query: 106 LEEVPRDQYDSVLNLV--SCEPNVAKPDFIFQVQYSPQSSIESNWSKLSLGRKKILHAFH 163
            EE      + +   V  +        D      +  +   E    K           +H
Sbjct: 292 SEE-----AEIIRKYVKNTHATTHNAYDLEVIDIFKIEREGECQRYKPFKQLHNRRLLWH 346

Query: 164 GSRLENFHSILNFGLQQHFNKNS----LFGQGIYLSSQLGICLIYSPYSAGWGGSC---- 215
           GSR  NF  IL+ GL+    +      +FG+GIY +  +     Y   S G         
Sbjct: 347 GSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGDPIGLILLG 406

Query: 216 ---VGSELSIVSLCSIVDDP---DQVKCQEDTEENRRRALAQDS----LGGEVPHKY--- 262
              +G+   +     I   P     VK    T  +    ++ D     LG  +       
Sbjct: 407 EVALGNMYELKHASHISKLPKGKHSVKGLGKTTPDPSANISLDGVDVPLGTGISSGVNDT 466

Query: 263 ------YVVENSALVKVKYVLVYTRHKVTASHQVH 291
                 Y+V + A V +KY+L    +  T+    H
Sbjct: 467 SLLYNEYIVYDIAQVNLKYLLKLKFNFKTSLWLEH 501

>3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A* 3ce0_A* 3fhb_A* Length = 357

 Score = 42.4 bits (99), Expect = 9e-05
 Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 4/80 (5%)

Query: 133 IFQVQYSPQSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNFGLQQHFNKNSLFGQGI 192
           I++V        E +  +           +HG+ +    +IL  GL+   +     G+GI
Sbjct: 183 IWKVNQE----GEEDRFQAHSKLGNRKLLWHGTNMAVVAAILTSGLRIMPHSGGRVGKGI 238

Query: 193 YLSSQLGICLIYSPYSAGWG 212
           Y +S+      Y        
Sbjct: 239 YFASENSKSAGYVIGMKCGA 258

>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor complex, catalytic fragment, S genomics, structural genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens} PDB: 3kcz_A* 1gs0_A Length = 368

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 40/278 (14%), Positives = 84/278 (30%), Gaps = 51/278 (18%)

Query: 39  RVSSCLHPFPPMFIKNQH--KDISAVLECINQMPLLSSVLHSQRNSHPSPKLCDLIYLLH 96
           R+        P  I+ Q    +   +LE +  + +   ++ ++  S   P   D  Y   
Sbjct: 97  RIPHDFGLRTPPLIRTQKELSEKIQLLEALGDIEIAIKLVKTELQSPEHP--LDQHYRNL 154

Query: 97  WLLVEQSPSLEEVPRD--QYDSVLNLV--SCEPNVAKPDFIFQVQYSPQSSIESNWSKLS 152
                   +L  +  +  ++  +   +  +  P  +         +  +   E       
Sbjct: 155 HC------ALRPLDHESYEFKVISQYLQSTHAPTHSDYTMTLLDLFEVEKDGE--KEAFR 206

Query: 153 LGRKKILHAFHGSRLENFHSILNFGLQ----QHFNKNSLFGQGIYLSSQLGICLIYSPYS 208
                 +  +HGSR+ N+  IL+ GL+    +      +FG+GIY +        Y   S
Sbjct: 207 EDLHNRMLLWHGSRMSNWVGILSHGLRIAHPEAPITGYMFGKGIYFADMSSKSANYCFAS 266

Query: 209 AGWGGSC-------VGSELSIVSLCSIVDDP----DQVKCQEDTEENRRRALAQDSLGGE 257
                         +G    ++      +         K       +    +  +  G  
Sbjct: 267 RLKNTGLLLLSEVALGQCNELLEANPKAEGLLQGKHSTKGLGKMAPSSAHFVTLN--GST 324

Query: 258 VPHKY------------------YVVENSALVKVKYVL 277
           VP                     Y+V N   V+++Y+L
Sbjct: 325 VPLGPASDTGILNPDGYTLNYNEYIVYNPNQVRMRYLL 362

>2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo sapiens} Length = 198

 Score = 39.6 bits (92), Expect = 4e-04
 Identities = 19/125 (15%), Positives = 35/125 (28%), Gaps = 9/125 (7%)

Query: 160 HAFHGSRLENFHSILNFGLQQ--HFNKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVG 217
             FHG+      +I              + +G+G Y +        YS            
Sbjct: 75  QLFHGTSAIFVDAICQQNFDWRVCGVHGTSYGKGSYFARDAAYSHHYSKSDTQTH---TM 131

Query: 218 SELSIVSLCSIVDDPDQVKCQEDTEENRRRALAQDSLGGEVP-HKYYVVENSALVKVKYV 276
               ++    +  +   V+       +       DS    V     +V+     V  +YV
Sbjct: 132 FLARVLVGEFVRGNASFVRPPAKEGWSNAFY---DSCVNSVSDPSIFVIFEKHQVYPEYV 188

Query: 277 LVYTR 281
           + YT 
Sbjct: 189 IQYTT 193

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	291
4f0d_A	277	PARP-16, poly [ADP-ribose] polymerase 16; transfer	100.0
1efy_A	350	Poly (ADP-ribose) polymerase; benzimidazole, inhib	99.92
3kjd_A	368	Poly [ADP-ribose] polymerase 2; transferase, enzym	99.92
4dqy_C	506	Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-rib	99.92
3c4h_A	357	Poly(ADP-ribose) polymerase 3; enzyme-inhibitor co	99.9
2x5y_A	173	Zinc finger CCCH-type antiviral protein 1; antivir	99.88
2pqf_A	198	Poly [ADP-ribose] polymerase 12; enzyme-inhibitor	99.78
3blj_A	221	Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC,	99.75
3smj_A	193	Poly [ADP-ribose] polymerase 14; diphtheria toxin	99.73
3u9h_A	240	Tankyrase-2; protein-ligand complex, diphtheria to	99.69
3hkv_A	217	PARP-10, poly [ADP-ribose] polymerase 10; NAD, tra	99.68
1wfx_A	186	Probable RNA 2'-phosphotransferase; tRNA splicing,	92.3

>4f0d_A PARP-16, poly [ADP-ribose] polymerase 16; transferase, ARTD15, structural genomics structural genomics consortium, SGC; HET: 3AB; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.1e-78  Score=552.43  Aligned_cols=265  Identities=38%  Similarity=0.725  Sum_probs=223.1

Q ss_pred             HHHHHHHHHhCccchhHHHHHHHHHhhcccccccccCCCCcccCCCCCCHHHHHHHhccCCChHHHHHhhhcCCCCCCCc
Q psy5396          10 ITELKQILAWNKLGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKNQHKDISAVLECINQMPLLSSVLHSQRNSHPSPKLC   89 (291)
Q Consensus        10 ~~~l~~~L~~d~~~~Dll~slf~aAa~S~r~~s~l~PfP~~~~~~~~kd~d~L~~~l~~lP~l~~m~~~l~~~~~~~~~~   89 (291)
                      ++.|+++|++||+||||+||||+|||+|||++++|+|||+.|++++.||||+|+.++++||++.+|.+.+.     ..++
T Consensus         4 ~~~l~e~l~rDp~aaDl~~SLFvAAa~SyR~ds~LrPFPp~f~~~d~K~id~L~~~v~~lP~l~~l~~~~~-----~~~~   78 (277)
T 4f0d_A            4 WAAAREAAGRDMLAADLRCSLFASALQSYKRDSVLRPFPASYARGDCKDFEALLADASKLPNLKELLQSSG-----DNHK   78 (277)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHHSTTHHHHSCSCCGGGBSSSCBCHHHHHHHHHTCCCHHHHHTTCC-----SSCH
T ss_pred             HHHHHHHHhhCchhHHHHHHHHHHHHhcccCceeeecCCcccCCCccccHHHHHHHHhcCCChHHHHhccc-----cCCH
Confidence            57899999999999999999999999999999999999999999999999999999999999999987432     2389


Q ss_pred             chhHHHHHHHHhCCCeEEeCCcchHHHHHHhhcCCC-CCCCceeeEEEecCCCCchhhhhhhhccCCCceEEEEcCCCch
Q psy5396          90 DLIYLLHWLLVEQSPSLEEVPRDQYDSVLNLVSCEP-NVAKPDFIFQVQYSPQSSIESNWSKLSLGRKKILHAFHGSRLE  168 (291)
Q Consensus        90 ~~~~LL~Wil~s~~~~l~~l~~~e~~~l~~~~~~~~-~~~~p~~iF~V~~~~~~~~e~~F~~~~~~~~~~~~afHGS~~~  168 (291)
                      .+++||+|||.++.+.|+.++++||++|+++++.++ |...|++||+|.+.+++  +++|+++++.++ ++||||||+++
T Consensus        79 ~~~~LL~WIL~~~~~~l~~l~k~ef~~l~~~~g~~~~p~~~P~~If~V~~~~~~--~~~f~~~~~~~~-~~~~~HGS~l~  155 (277)
T 4f0d_A           79 RAWDLVSWILSSKVLTIHSAGKAEFEKIQKLTGAPHTPVPAPDFLFEIEYFDPA--NAKFYETKGERD-LIYAFHGSRLE  155 (277)
T ss_dssp             HHHHHHHHHTCCSSEEEEECCSHHHHHHHHHTCSCSSCCCCCSEEEEEEECTTH--HHHHHHHHTTSC-EEEEEEECCGG
T ss_pred             HHHHHHHHHHhcCCcceEecCHHHHHHHHHHhCCCCCCCCCCceeEEEecCcch--hhHHHHhhccCC-cEEEEcCCcHH
Confidence            999999999999889999999999999999999865 67899999999987776  899999999999 99999999999


Q ss_pred             hHHHHHHhccccCCCCCcccCceeEEeccccccccccCCCCCCCCCCCCccccEEEEEeeecCCCcceec---ccchh-h
Q psy5396         169 NFHSILNFGLQQHFNKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQ---EDTEE-N  244 (291)
Q Consensus       169 N~~sIL~~GL~~~~~~~~~~G~GiYls~~~~~S~~ys~~~~~w~~S~~g~~l~~valcEvv~~p~~~~~~---~~~~~-~  244 (291)
                      ||||||++||++++++|++||+|||||+++++|++||+.+.+|++|.+|..++|||||||||+|+ +++|   +|+.+ .
T Consensus       156 n~~sIL~~GL~~~~~~g~~fG~GiY~a~~~~~S~~ys~~~~~W~~S~~g~~~~~valcEvv~~p~-~k~q~~~~~~~~~~  234 (277)
T 4f0d_A          156 NFHSIIHNGLHCHLNKTSLFGEGTYLTSDLSLALIYSPHGHGWQHSLLGPILSCVAVCEVIDHPD-VKCQTKKKDSKEID  234 (277)
T ss_dssp             GHHHHHHHCSCCC--CCCSSSCCEEEBSCHHHHHTTCCCEECCTTCTTCSEEEEEEEEEEECCCC---------------
T ss_pred             HHHHHHhcccccCcccccccCCceEeecchHHHhhhccCCCCcCcccccccceEEEEEEEecCCc-ceeeeecccccccc
Confidence            99999999999999999999999999999999999999999999999997789999999999999 7766   34443 6


Q ss_pred             HhhhhhccCCCCCcCCeEEEEecCCeeEEEEEEEEecCC
Q psy5396         245 RRRALAQDSLGGEVPHKYYVVENSALVKVKYVLVYTRHK  283 (291)
Q Consensus       245 ~~~~~~~~~~~~~~p~~y~VV~n~~~v~~rYLlvy~~~~  283 (291)
                      +.|+|+++|++|++|++||||+|++||||||||||++++
T Consensus       235 ~~~~~~~~s~~~~~p~~y~vV~n~~~v~~rYllvy~~~~  273 (277)
T 4f0d_A          235 RRRARIKHSEGGDIPPKYFVVTNNQLLRVKYLLVYSQKP  273 (277)
T ss_dssp             ----------------CCEEECCGGGEEEEEEEEEEC--
T ss_pred             ccccccccccCCCCCCCEEEEEccceEEEEEEEEEccCc
Confidence            789999999999999999999999999999999999876

>1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic fragment, transferase; HET: BZC; 2.20A {Gallus gallus} SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A 2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A* 2rd6_A* 3gjw_A* 3gn7_A* 3l3l_A* 3l3m_A*

Probab=99.92  E-value=1.5e-24  Score=205.19  Aligned_cols=248  Identities=16%  Similarity=0.174  Sum_probs=161.0

Q ss_pred             HHHHHHHHHHHHhCccchhHHHHHHHHHhhcccccccccCCCCcccC---CCCCCHHHHHHHhccCCChHHHH---Hhhh
Q psy5396           7 DVKITELKQILAWNKLGCDIKWSIFVSACQSYRVSSCLHPFPPMFIK---NQHKDISAVLECINQMPLLSSVL---HSQR   80 (291)
Q Consensus         7 ~~~~~~l~~~L~~d~~~~Dll~slf~aAa~S~r~~s~l~PfP~~~~~---~~~kd~d~L~~~l~~lP~l~~m~---~~l~   80 (291)
                      ...|.+|+++|+......     .+..+  |.|+++++   |+.|..   +-..+.+.|.+.++.|-.|.+|.   +-+.
T Consensus        49 ~~vL~~i~~~l~~~~~~~-----~l~~l--s~~fyt~I---Ph~fg~~~p~~i~~~~~l~~k~~lle~L~die~A~~l~~  118 (350)
T 1efy_A           49 YSILNEVQQAVSDGGSES-----QILDL--SNRFYTLI---PHDFGMKKPPLLSNLEYIQAKVQMLDNLLDIEVAYSLLR  118 (350)
T ss_dssp             HHHHHHHHHHHHTTCCHH-----HHHHH--HHHHHHHS---CBCCCSSCCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccchH-----HHHHH--HHhHHhhc---CccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456888889988765332     22223  33666664   333321   11236666665555555555552   2222


Q ss_pred             cCCCCCCCcchhHHHHHHHHhCCCeEEeCCcc--hHHHHHHhhcCCCCC------CCceeeEEEecCCCCchhhhhhhhc
Q psy5396          81 NSHPSPKLCDLIYLLHWLLVEQSPSLEEVPRD--QYDSVLNLVSCEPNV------AKPDFIFQVQYSPQSSIESNWSKLS  152 (291)
Q Consensus        81 ~~~~~~~~~~~~~LL~Wil~s~~~~l~~l~~~--e~~~l~~~~~~~~~~------~~p~~iF~V~~~~~~~~e~~F~~~~  152 (291)
                      ...    .....+.|...+....|.|.+|+++  ||..|.+++..+...      .....||+|+...+   .++|+..+
T Consensus       119 ~~~----~~~~~~pld~~y~~L~~~l~~L~~~s~Ey~~I~~~~~~t~~~~h~~~~~~I~~I~rV~~~~~---~~~f~~~k  191 (350)
T 1efy_A          119 GGN----EDGDKDPIDINYEKLRTDIKVVDKDSEEAKIIKQYVKNTHAATHNAYDLKVVEIFRIEREGE---SQRYKPFK  191 (350)
T ss_dssp             SCC----CCSSSCHHHHHHHHTCEEEEECCTTSHHHHHHHHHHHHTCCGGGCSEEEEEEEEEEEEETTH---HHHHGGGG
T ss_pred             hcc----cCCCCChhHHHHHHhCCEEEEcCCCChHHHHHHHHHhcccCCCCCCCcccccceEEecCHHH---HHHHHHhh
Confidence            221    1111355666677767999999765  799999998776532      23567899997654   68898766


Q ss_pred             cCCCceEEEEcCCCchhHHHHHHhccccCC----CCCcccCceeEEeccccccccccCCCCCCCCCCCCccccEEEEEee
Q psy5396         153 LGRKKILHAFHGSRLENFHSILNFGLQQHF----NKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSI  228 (291)
Q Consensus       153 ~~~~~~~~afHGS~~~N~~sIL~~GL~~~~----~~~~~~G~GiYls~~~~~S~~ys~~~~~w~~S~~g~~l~~valcEv  228 (291)
                      +..+ .+++||||+.+||++|+++||+.++    .+|++||+|||||+++++|.+||..+..       ...++|.||||
T Consensus       192 ~~~n-~~~L~HGt~~~n~~~Il~~Gf~~~~~~~~~~g~~fG~GiYfa~~~skS~~Y~~~~~~-------~~~~~m~Lc~V  263 (350)
T 1efy_A          192 QLHN-RQLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQA-------DPIGLILLGEV  263 (350)
T ss_dssp             GSSC-EEEEEEEECGGGHHHHHHHCSCCCCTTSCGGGSTTSSSEEEBSSHHHHHGGGCCCSS-------SCEEEEEEEEE
T ss_pred             ccCC-eeEEEeCCchHHHHHHHHcCCCcccccCCCccCceecccccccchhhhhccccCCCC-------CCeEEEEEEEE
Confidence            6667 9999999999999999999999765    3578999999999999999999976532       23699999999


Q ss_pred             ecCCCcceecc-cc-----hh-hHhhhhh----------------------cc--CCCCCcCCeEEEEecCCeeEEEEEE
Q psy5396         229 VDDPDQVKCQE-DT-----EE-NRRRALA----------------------QD--SLGGEVPHKYYVVENSALVKVKYVL  277 (291)
Q Consensus       229 v~~p~~~~~~~-~~-----~~-~~~~~~~----------------------~~--~~~~~~p~~y~VV~n~~~v~~rYLl  277 (291)
                      +.... ..... +.     +. +...+.+                      ..  ..++.+....|||.|.++|++|||+
T Consensus       264 ~lG~~-~~~~~~~~~~~~p~g~~Sv~g~g~~~Pd~~~~~~~dgv~vP~G~~~~~~~~~~~l~~~EyVVYd~~Qi~p~YLI  342 (350)
T 1efy_A          264 ALGNM-YELKNASHITKLPKGKHSVKGLGKTAPDPTATTTLDGVEVPLGNGISTGINDTCLLYNEYIVYDVAQVNLKYLL  342 (350)
T ss_dssp             ECCSE-EEESSCCCCCSCCTTCCEEEECCSEEECGGGCEEETTEEECCSCEEECSCCSSSCSBCEEEESCGGGEEEEEEE
T ss_pred             ecCCc-eeccCcchhhhcCCCCcceeeccccCCCccccccCCCeeeecCcccCCCCCCCCCCCCEEEEEchhheeEEEEE
Confidence            86432 11110 00     00 0000000                      00  0122333467999999999999999


Q ss_pred             EEe
Q psy5396         278 VYT  280 (291)
Q Consensus       278 vy~  280 (291)
                      .|.
T Consensus       343 ~~~  345 (350)
T 1efy_A          343 KLK  345 (350)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            985

>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor complex, catalytic fragment, S genomics, structural genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens} PDB: 3kcz_A* 1gs0_A

Probab=99.92  E-value=1.1e-24  Score=206.59  Aligned_cols=199  Identities=14%  Similarity=0.165  Sum_probs=135.7

Q ss_pred             HHHHHHHHHHHHhCccchhHHHHHHHHHhhcccccccccCCCCcccC---CCCCCHHHHHHHhccCCChHHHHH--hhhc
Q psy5396           7 DVKITELKQILAWNKLGCDIKWSIFVSACQSYRVSSCLHPFPPMFIK---NQHKDISAVLECINQMPLLSSVLH--SQRN   81 (291)
Q Consensus         7 ~~~~~~l~~~L~~d~~~~Dll~slf~aAa~S~r~~s~l~PfP~~~~~---~~~kd~d~L~~~l~~lP~l~~m~~--~l~~   81 (291)
                      ...|.+|.++|+......+     +..+  |.|+++++   |+.|.+   +-..+.+.|.+.++.|..|.+|.-  .+..
T Consensus        68 ~~vL~~i~~~l~~~~~~~~-----l~~l--sn~fYtlI---Ph~fg~~~pp~I~~~~~l~~k~~lle~L~dieiA~~l~~  137 (368)
T 3kjd_A           68 YQSLKKIEDCIRAGQHGRA-----LMEA--CNEFYTRI---PHDFGLRTPPLIRTQKELSEKIQLLEALGDIEIAIKLVK  137 (368)
T ss_dssp             HHHHHHHHHHHHTTCCSHH-----HHHH--HHHHHHHS---CBCCTTSCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcccchHH-----HHHH--HhhhhhhC---CccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3457888888887554332     2222  44777764   444422   112466666555555555555522  1222


Q ss_pred             CCCCCCCcchhHHHHHHHHhCCCeEEeCCcc--hHHHHHHhhcCCCCCC------CceeeEEEecCCCCchhhhhhhhcc
Q psy5396          82 SHPSPKLCDLIYLLHWLLVEQSPSLEEVPRD--QYDSVLNLVSCEPNVA------KPDFIFQVQYSPQSSIESNWSKLSL  153 (291)
Q Consensus        82 ~~~~~~~~~~~~LL~Wil~s~~~~l~~l~~~--e~~~l~~~~~~~~~~~------~p~~iF~V~~~~~~~~e~~F~~~~~  153 (291)
                      ...    ....+.|.+.+.+..|.|..|+++  ||..|.+++..+..++      ....||+|++..+   .++|+  ++
T Consensus       138 ~~~----~~~~~pld~~Y~~L~~~l~~L~~~s~Ey~~I~~y~~~T~~~~h~~~~~~I~~IfrI~r~~e---~~~F~--k~  208 (368)
T 3kjd_A          138 TEL----QSPEHPLDQHYRNLHCALRPLDHESYEFKVISQYLQSTHAPTHSDYTMTLLDLFEVEKDGE---KEAFR--ED  208 (368)
T ss_dssp             --------CCSCHHHHHHHHHTEEEEECCTTSHHHHHHHHHHHHTCCTTCTTCEEEEEEEEEEEETTH---HHHSC--TT
T ss_pred             hcc----CCCCChhhHHHHhcCcEEEEcCCCChHHHHHHHHHHhcCCcccCcCceeEEEEEEecchHH---HHHHh--hc
Confidence            211    112366777777777899999775  7999999987766533      3355899999764   57888  23


Q ss_pred             CCCceEEEEcCCCchhHHHHHHhccccCC----CCCcccCceeEEeccccccccccCCCCCCCCCCCCccccEEEEEeee
Q psy5396         154 GRKKILHAFHGSRLENFHSILNFGLQQHF----NKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIV  229 (291)
Q Consensus       154 ~~~~~~~afHGS~~~N~~sIL~~GL~~~~----~~~~~~G~GiYls~~~~~S~~ys~~~~~w~~S~~g~~l~~valcEvv  229 (291)
                      ..+ .+++||||+.+||++||++||+.++    .+|++||+|||||+++++|.+||.++..       ...++|.||||+
T Consensus       209 ~~N-~~lLwHGT~~~n~~~Il~~Gf~~~~~~~~~~g~~fGkGIYFA~~~skS~~Y~~~~~~-------~~~~~mlLc~V~  280 (368)
T 3kjd_A          209 LHN-RMLLWHGSRMSNWVGILSHGLRIAHPEAPITGYMFGKGIYFADMSSKSANYCFASRL-------KNTGLLLLSEVA  280 (368)
T ss_dssp             CSC-EEEEEEECCGGGHHHHHHHCSCCCCTTSCGGGSTTCSSEEEBSSHHHHHHTTCCCSS-------SCEEEEEEEEEE
T ss_pred             CCC-ceEEEeCCCHHHHHHHHHcCCCcccccccccCceeeeEEEccccccccccccCCCCC-------CCeEEEEEEEEe
Confidence            345 9999999999999999999999865    3578999999999999999999965321       136899999998


Q ss_pred             cCC
Q psy5396         230 DDP  232 (291)
Q Consensus       230 ~~p  232 (291)
                      ...
T Consensus       281 lG~  283 (368)
T 3kjd_A          281 LGQ  283 (368)
T ss_dssp             CCS
T ss_pred             cCC
Confidence            754

>4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase, DNA binding protein, ADP- transferase, PARP-like zinc finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo sapiens} PDB: 2cr9_A

Probab=99.92  E-value=7e-24  Score=208.73  Aligned_cols=250  Identities=17%  Similarity=0.178  Sum_probs=161.9

Q ss_pred             HHHHHHHHHHHHhCccchhHHHHHHHHHhhcccccccccCCCCcccC---CCCCCHHHHHHHhccCCChHHHHH--hhhc
Q psy5396           7 DVKITELKQILAWNKLGCDIKWSIFVSACQSYRVSSCLHPFPPMFIK---NQHKDISAVLECINQMPLLSSVLH--SQRN   81 (291)
Q Consensus         7 ~~~~~~l~~~L~~d~~~~Dll~slf~aAa~S~r~~s~l~PfP~~~~~---~~~kd~d~L~~~l~~lP~l~~m~~--~l~~   81 (291)
                      ...|.+|.++|+.......     +..+  |.|+++++   |+.|.+   +-..+.+.|...++.|-.|.+|.-  .+..
T Consensus       194 ~~vL~~i~~~l~~~~~~~~-----l~~l--sn~fYtlI---Ph~fg~~~pp~i~~~~~l~~k~~ll~~L~dieiA~~l~~  263 (506)
T 4dqy_C          194 YSILSEVQQAVSQGSSDSQ-----ILDL--SNRFYTLI---PHDFGMKKPPLLNNADSVQAKAEMLDNLLDIEVAYSLLR  263 (506)
T ss_dssp             HHHHHHHHHHHHTTCCHHH-----HHHH--HHHHHHHS---CBCCTTSCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhccccHHH-----HHHH--HhhhhEeC---CccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4457788888876533322     2223  34666654   444422   112355655444444444444421  1222


Q ss_pred             CCCCCCCcchhHHHHHHHHhCCCeEEeCCcc--hHHHHHHhhcCCCCC------CCceeeEEEecCCCCchhhhhhhhcc
Q psy5396          82 SHPSPKLCDLIYLLHWLLVEQSPSLEEVPRD--QYDSVLNLVSCEPNV------AKPDFIFQVQYSPQSSIESNWSKLSL  153 (291)
Q Consensus        82 ~~~~~~~~~~~~LL~Wil~s~~~~l~~l~~~--e~~~l~~~~~~~~~~------~~p~~iF~V~~~~~~~~e~~F~~~~~  153 (291)
                      ...   .....+.|...+....|.|.+|+++  ||..|.+++..+..+      ....-||+|+...+   .++|+..++
T Consensus       264 ~~~---~~~~~~pld~~Y~~L~~~l~~L~~~s~Ey~~I~~~~~~T~~~~h~~~~~~I~~I~rI~~~~e---~~~f~~~k~  337 (506)
T 4dqy_C          264 GGS---DDSSKDPIDVNYEKLKTDIKVVDRDSEEAEIIRKYVKNTHATTHNAYDLEVIDIFKIEREGE---CQRYKPFKQ  337 (506)
T ss_dssp             CSC---CCTTSCHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHTCCSSCTTCCCCEEEEEEEEETTT---TTTTHHHHS
T ss_pred             hhc---cCCCCCchHHHHHHhCcEEEECCCCChHHHHHHHHHHhccCcccccCCceeEeEEEEccHHH---HhhHHHhhc
Confidence            211   1123456778888877999999875  799999998776542      35567999999876   478887665


Q ss_pred             CCCceEEEEcCCCchhHHHHHHhccccCC----CCCcccCceeEEeccccccccccCCCCCCCCCCCCccccEEEEEeee
Q psy5396         154 GRKKILHAFHGSRLENFHSILNFGLQQHF----NKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIV  229 (291)
Q Consensus       154 ~~~~~~~afHGS~~~N~~sIL~~GL~~~~----~~~~~~G~GiYls~~~~~S~~ys~~~~~w~~S~~g~~l~~valcEvv  229 (291)
                      ..+ .+++||||+..||++||++||+.++    .+|++||+|||||+++++|.+||.++..       ...++|.||||+
T Consensus       338 ~~N-~~lL~HGT~~~n~~~Il~~Gf~~~~~~a~~~G~~fGkGiYFA~~askS~~Y~~~~~~-------~~~~~mll~~V~  409 (506)
T 4dqy_C          338 LHN-RRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQG-------DPIGLILLGEVA  409 (506)
T ss_dssp             SSC-EEEEEEECCTTTHHHHHHHCSCCCCSSSCCTTCSSCSSEEEBSSHHHHHTTSCCCSS-------SCEEEEEEEEEE
T ss_pred             CCC-ceEEecCCChHhHHHHHhcCCCcCCccCCcCCceeeeeEEecchhhccccccCCCCC-------CCeEEEEEEEEe
Confidence            566 9999999999999999999999764    3678999999999999999999976532       126899999998


Q ss_pred             cCCCcceecc-c----ch--hhHhhhhhc------------------------cCCCCCcCCeEEEEecCCeeEEEEEEE
Q psy5396         230 DDPDQVKCQE-D----TE--ENRRRALAQ------------------------DSLGGEVPHKYYVVENSALVKVKYVLV  278 (291)
Q Consensus       230 ~~p~~~~~~~-~----~~--~~~~~~~~~------------------------~~~~~~~p~~y~VV~n~~~v~~rYLlv  278 (291)
                      ...- +.... +    .+  .+...+.++                        ...++.+-...|||+|.++|++|||+.
T Consensus       410 lG~~-~~~~~~~~~~~~p~G~dSv~g~g~~~P~p~~~~~~dGv~vP~G~~~~~~~~~~~l~ynEyiVYd~~Qir~rYLv~  488 (506)
T 4dqy_C          410 LGNM-YELKHASHISKLPKGKHSVKGLGKTTPDPSANISLDGVDVPLGTGISSGVNDTSLLYNEYIVYDIAQVNLKYLLK  488 (506)
T ss_dssp             CCSE-EEESSCCCCSSCCTTCCEEEECCSEEECGGGCEESSSCEECCCCEEECSCCCCSCSBCEEEESSGGGEEEEEEEE
T ss_pred             cCCc-eecccchhhhccCCCCceEEeCCcCcCCcccccccCCeEEECCCcccCCCCCCcccccceEEEchHHeeEEEEEE
Confidence            7532 22110 0    00  000000000                        001234455679999999999999987


Q ss_pred             Eec
Q psy5396         279 YTR  281 (291)
Q Consensus       279 y~~  281 (291)
                      +.=
T Consensus       489 v~~  491 (506)
T 4dqy_C          489 LKF  491 (506)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            653

>3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A* 3ce0_A* 3fhb_A*

Probab=99.90  E-value=9.3e-24  Score=200.30  Aligned_cols=204  Identities=13%  Similarity=0.078  Sum_probs=138.6

Q ss_pred             HHHHHHHHHHHHhCccchhHHHHHHHHHhhcccccccccCCCCcccCC---CCCCHHHHHHHhccCCChHHHHH--hhhc
Q psy5396           7 DVKITELKQILAWNKLGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKN---QHKDISAVLECINQMPLLSSVLH--SQRN   81 (291)
Q Consensus         7 ~~~~~~l~~~L~~d~~~~Dll~slf~aAa~S~r~~s~l~PfP~~~~~~---~~kd~d~L~~~l~~lP~l~~m~~--~l~~   81 (291)
                      ...|.+|+++|+........+    ..+  |.|+++++   |+.|...   -..+.+.|.+.++.|-.|.+|.-  .+..
T Consensus        55 ~~vL~~i~~~l~~~~~~~~~~----~~l--s~~fyt~I---Ph~fg~~~p~~i~~~~~l~~k~~lle~l~di~~a~~l~~  125 (357)
T 3c4h_A           55 FEALEALEEALKGPTDGGQSL----EEL--SSHFYTVI---PHNFGHSQPPPINSPELLQAKKDMLLVLADIELAQALQA  125 (357)
T ss_dssp             HHHHHHHHHHHTSCCCSCCCH----HHH--HHHHHHHS---CBCSTTSCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhccccchHHH----HHH--HHHHHhhc---CcccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445788888887655433211    112  33666653   4333211   12366666665555555555532  1222


Q ss_pred             CCCCCCCcch-----hHHHHHHHHhCCCeEEeCCcc--hHHHHHHhhcCCCCC---CCceeeEEEecCCCCchhhhhhhh
Q psy5396          82 SHPSPKLCDL-----IYLLHWLLVEQSPSLEEVPRD--QYDSVLNLVSCEPNV---AKPDFIFQVQYSPQSSIESNWSKL  151 (291)
Q Consensus        82 ~~~~~~~~~~-----~~LL~Wil~s~~~~l~~l~~~--e~~~l~~~~~~~~~~---~~p~~iF~V~~~~~~~~e~~F~~~  151 (291)
                      ..    ....     .+.|...+....|.|.+++++  ||..|.+++..+.+.   .....||+|+...+   .++|+..
T Consensus       126 ~~----~~~~~~~~~~~pld~~y~~L~~~l~~L~~~s~Ey~~I~~~f~~t~~~~~~~~I~~I~rV~n~~~---~~rF~~~  198 (357)
T 3c4h_A          126 VS----EQEKTVEEVPHPLDRDYQLLKCQLQLLDSGAPEYKVIQTYLEQTGSNHRCPTLQHIWKVNQEGE---EDRFQAH  198 (357)
T ss_dssp             CC----HHHHHCSEECCHHHHHHHHHCCEEEECCTTSTTHHHHHHHHHHHSCSSSCCCEEEEEEEECTTS---HHHHHTT
T ss_pred             hh----ccccccCCCCChhHHHHHHhCCEEEECCCCChHHHHHHHHHHhcCCCCCCccEEEEEEecCHHH---HHHHHHH
Confidence            11    1111     355666677756899999764  799998887665333   46778999997654   6899987


Q ss_pred             ccCCCceEEEEcCCCchhHHHHHHhccccCCCCCcccCceeEEeccccccccccCCCCCCCCCCCCccccEEEEEeeecC
Q psy5396         152 SLGRKKILHAFHGSRLENFHSILNFGLQQHFNKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDD  231 (291)
Q Consensus       152 ~~~~~~~~~afHGS~~~N~~sIL~~GL~~~~~~~~~~G~GiYls~~~~~S~~ys~~~~~w~~S~~g~~l~~valcEvv~~  231 (291)
                      ++..+ .+++||||+.+||.+|+++||+.++++|.+||+|||||+++++|.+||....+..     ...++|.||||+..
T Consensus       199 k~~~n-~~~LfHGt~~~~~~~I~~~Gf~~~~~~g~~fG~GiYfa~~~skS~~Y~~~~~~~~-----~~~~~mllc~V~lG  272 (357)
T 3c4h_A          199 SKLGN-RKLLWHGTNMAVVAAILTSGLRIMPHSGGRVGKGIYFASENSKSAGYVIGMKCGA-----HHVGYMFLGEVALG  272 (357)
T ss_dssp             TTCCC-EEEEEEEECHHHHHHHHHHCSCCCTTCCCTTCSSEEEBSSHHHHHTTCCCEEETT-----EEEEEEEEEEEECC
T ss_pred             hccCC-eEEEEeCCChhhHHHHHHcCCcccCCCCCceECCEecCCcchhhhhhcccCCCCC-----CCeEEEEEEEEecC
Confidence            66667 9999999999999999999999888889999999999999999999997221111     23689999999865


Q ss_pred             C
Q psy5396         232 P  232 (291)
Q Consensus       232 p  232 (291)
                      .
T Consensus       273 ~  273 (357)
T 3c4h_A          273 R  273 (357)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2x5y_A Zinc finger CCCH-type antiviral protein 1; antiviral defense, immune system, transferase; 1.05A {Homo sapiens}

Probab=99.88  E-value=7.5e-23  Score=175.73  Aligned_cols=163  Identities=16%  Similarity=0.146  Sum_probs=119.7

Q ss_pred             CCCeEEeCCcc--hHHHHHHhhcCCCCCCCceeeEEEecCCCCchhhhhhhhcc--CCCceEEEEcCCCchhHHHHHHhc
Q psy5396         102 QSPSLEEVPRD--QYDSVLNLVSCEPNVAKPDFIFQVQYSPQSSIESNWSKLSL--GRKKILHAFHGSRLENFHSILNFG  177 (291)
Q Consensus       102 ~~~~l~~l~~~--e~~~l~~~~~~~~~~~~p~~iF~V~~~~~~~~e~~F~~~~~--~~~~~~~afHGS~~~N~~sIL~~G  177 (291)
                      ..|.|.+|+++  ||..|.+++..+.+.....-||+|+....   .++|+..++  ..+ .+++||||+.+||++|+++|
T Consensus         3 ~~~~l~~L~~~s~ey~~v~~~f~~t~~~~~I~~I~rv~n~~~---~~~f~~~k~~~~~n-~~~l~HGt~~~~~~~I~~~G   78 (173)
T 2x5y_A            3 KKYKLSEIHHLHPEYVRVSEHFKASMKNFKIEKIKKIENSEL---LDKFTWKKSQMKEE-GKLLFYATSRAYVESICSNN   78 (173)
T ss_dssp             CCCEEEECCTTSHHHHHHHHHHHTTCTTEEEEEEEEEECHHH---HHHHHHHHHHHTCC-CEEEEEEEEGGGHHHHHHHC
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHhHCCCCEEeEEEEECCHHH---HHHHHHHHHHHhhC-cEEEEecCCcccHHHHHHhC
Confidence            45778888764  79999999887666666777899887542   578887654  346 99999999999999999999


Q ss_pred             ccc--CCCCCcccCceeEEeccccccccccCCCCCCCCCCCCccccEEEEEeeecCCCcceecccchhhHhhhhhccCCC
Q psy5396         178 LQQ--HFNKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQEDTEENRRRALAQDSLG  255 (291)
Q Consensus       178 L~~--~~~~~~~~G~GiYls~~~~~S~~ys~~~~~w~~S~~g~~l~~valcEvv~~p~~~~~~~~~~~~~~~~~~~~~~~  255 (291)
                      |+.  +..++.+||+|||||+++++|.+||....       +  .++|.||||+...- ......-...+   .+.+|.-
T Consensus        79 f~~~~~~~~g~~~G~GiYfa~~~s~s~~Y~~~~~-------~--~~~m~lc~V~~G~~-~~~~~~~~~pp---~~ydSv~  145 (173)
T 2x5y_A           79 FDSFLHETHENKYGKGIYFAKDAIYSHKNCPYDA-------K--NVVMFVAQVLVGKF-IEGNITYTSPP---PQFDSCV  145 (173)
T ss_dssp             CCHHHHCCSCSSSCSSEEEESSHHHHHHHCCSCG-------G--GEEEEEEEECCCSE-EECCTTCSSCC---TTCCEEE
T ss_pred             CCCcccCCCcCCccCeEECCCChhhHhhcCCCCC-------C--CeEEEEEEEecCcc-ccCCcccCCCC---CCCCceE
Confidence            953  33568899999999999999999997544       1  48999999997651 22110000000   1233333


Q ss_pred             CCcC-CeEEEEecCCeeEEEEEEEEec
Q psy5396         256 GEVP-HKYYVVENSALVKVKYVLVYTR  281 (291)
Q Consensus       256 ~~~p-~~y~VV~n~~~v~~rYLlvy~~  281 (291)
                      +..+ .++|||.|++++.++||+.|.+
T Consensus       146 ~~~~~~~e~VV~~~~q~~P~YlI~y~~  172 (173)
T 2x5y_A          146 DTRSNPSVFVIFQKDQVYPQYVIEYTE  172 (173)
T ss_dssp             SCSSSCCEEEECCGGGEEEEEEEEEEE
T ss_pred             CCCCCCCEEEEEeCCeEeEEEEEEEeC
Confidence            3332 3579999999999999999975

>2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo sapiens}

Probab=99.78  E-value=1.5e-18  Score=151.89  Aligned_cols=167  Identities=17%  Similarity=0.121  Sum_probs=115.6

Q ss_pred             CCCeEEeCCcc--hHHHHHHhhcCCCCCCCceeeEEEecCCCCchhhhhhhhcc----C-----CCceEEEEcCCCchhH
Q psy5396         102 QSPSLEEVPRD--QYDSVLNLVSCEPNVAKPDFIFQVQYSPQSSIESNWSKLSL----G-----RKKILHAFHGSRLENF  170 (291)
Q Consensus       102 ~~~~l~~l~~~--e~~~l~~~~~~~~~~~~p~~iF~V~~~~~~~~e~~F~~~~~----~-----~~~~~~afHGS~~~N~  170 (291)
                      ..+.|.+|+++  ||..|.+++..+.+.....-|++|+....   .++|+..++    +     .+ .+++||||+.+||
T Consensus        10 ~~~~l~~L~~~s~Ey~~v~~~f~~t~~~~~I~~I~rv~n~~l---~~~f~~~k~~~~~~~~~~~~n-e~~LfHGt~~~~~   85 (198)
T 2pqf_A           10 PGFQKITLSSSSEEYQKVWNLFNRTLPFYFVQKIERVQNLAL---WEVYQWQKGQMQKQNGGKAVD-ERQLFHGTSAIFV   85 (198)
T ss_dssp             CSCEEEECCTTSHHHHHHHHHHHTTCTTSEEEEEEEEECHHH---HHHHHHHHHHHHHTTTTCCCC-EEEEEEECCGGGH
T ss_pred             CCeEEEEcCCCCHHHHHHHHHHHhhCCCCEEEEEEEeCCHHH---HHHHHHHHHHHHHhcCCCCcc-eEEEEecCCHHHH
Confidence            56788888775  79999999887666566667788776432   567765432    1     24 9999999999999


Q ss_pred             HHHHHhccccC--CCCCcccCceeEEeccccccccccCCCCCCCCCCCCccccEEEEEeeecCCCcceec-----ccchh
Q psy5396         171 HSILNFGLQQH--FNKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQ-----EDTEE  243 (291)
Q Consensus       171 ~sIL~~GL~~~--~~~~~~~G~GiYls~~~~~S~~ys~~~~~w~~S~~g~~l~~valcEvv~~p~~~~~~-----~~~~~  243 (291)
                      .+|+++||+..  ..++.+||+|||||+++++|.+||....       |  .++|.||+|+...- .+..     ++...
T Consensus        86 ~~I~~~Gf~~~~~~~~g~~~G~GiYfa~~~s~S~~Y~~~~~-------~--~~~m~lcrV~~G~~-~~~~~~~~~pp~~~  155 (198)
T 2pqf_A           86 DAICQQNFDWRVCGVHGTSYGKGSYFARDAAYSHHYSKSDT-------Q--THTMFLARVLVGEF-VRGNASFVRPPAKE  155 (198)
T ss_dssp             HHHHHHCCCTTTTCCCSSCSCSSEEEESSHHHHHTTCCCSS-------S--EEEEEEEEEECCSE-EECCTTCSSCCBCS
T ss_pred             HHHHHhCCCCcccCCCCCcccCeEECcCCcchhhhcccCCC-------C--ceEEEEEEEecCCc-ccCCccccCCCCCC
Confidence            99999999743  3357899999999999999999997543       2  58999999986432 1110     00000


Q ss_pred             hHhhhhhccCCCCCc-CCeEEEEecCCeeEEEEEEEEecCC
Q psy5396         244 NRRRALAQDSLGGEV-PHKYYVVENSALVKVKYVLVYTRHK  283 (291)
Q Consensus       244 ~~~~~~~~~~~~~~~-p~~y~VV~n~~~v~~rYLlvy~~~~  283 (291)
                       .......+|.-+.. -.+.|||.|++++.++||+.|....
T Consensus       156 -~~~~~~yDSvv~~~~~~~e~VVy~~~qiyP~YlI~y~~~~  195 (198)
T 2pqf_A          156 -GWSNAFYDSCVNSVSDPSIFVIFEKHQVYPEYVIQYTTSS  195 (198)
T ss_dssp             -CC--CBCSEEESCSSSCCEEEESCGGGEEEEEEEEEESCC
T ss_pred             -CCCCCCcccCcCCCCCCCEEEEECCCcEeeEEEEEEEcCC
Confidence             00000111111111 1256999999999999999997643

>3blj_A Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, structural GE consortium, glycosyltransferase, NAD, nucleus; 2.20A {Homo sapiens} PDB: 3gey_A*

Probab=99.75  E-value=1.2e-18  Score=154.96  Aligned_cols=165  Identities=13%  Similarity=0.158  Sum_probs=108.7

Q ss_pred             CCCeEEeCCcc--hHHHHHHhhcCCCCCCCceeeEEEecCCCCchhhhhhhhcc--------CCCceEEEEcCCCchhHH
Q psy5396         102 QSPSLEEVPRD--QYDSVLNLVSCEPNVAKPDFIFQVQYSPQSSIESNWSKLSL--------GRKKILHAFHGSRLENFH  171 (291)
Q Consensus       102 ~~~~l~~l~~~--e~~~l~~~~~~~~~~~~p~~iF~V~~~~~~~~e~~F~~~~~--------~~~~~~~afHGS~~~N~~  171 (291)
                      ..+.|..|+++  ||..|.+++..+.+.....-||+|+....   .++|+..++        ..+ .+++||||+.+||.
T Consensus        35 ~~~~l~~L~~~s~ey~~V~~~f~~t~~~~~I~~I~rV~n~~l---~~~f~~~k~~~~~k~~~~~n-e~lLfHGt~~~~~~  110 (221)
T 3blj_A           35 QLFCMVQLEPGQSEYNTIKDKFTRTCSSYAIEKIERIQNAFL---WQSYQVKKRQMDIKNDHKNN-ERLLFHGTDADSVP  110 (221)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHHHTTSEEEEEEEEEEHHH---HHHHHHHHHHHHHHSSSCCC-EEEEEEEECGGGHH
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHhhCCCCEEEEEEEEcChhH---HHHHHHHHHHHHHhcCCCCc-eEEEeccCChHHHH
Confidence            45778888764  78888888765444455667788876432   567765432        234 99999999999999


Q ss_pred             HHHHhccccC--CCCCcccCceeEEecccccccc--ccCCCCCCCCCCCCccccEEEEEeeecCCC-----cceecccch
Q psy5396         172 SILNFGLQQH--FNKNSLFGQGIYLSSQLGICLI--YSPYSAGWGGSCVGSELSIVSLCSIVDDPD-----QVKCQEDTE  242 (291)
Q Consensus       172 sIL~~GL~~~--~~~~~~~G~GiYls~~~~~S~~--ys~~~~~w~~S~~g~~l~~valcEvv~~p~-----~~~~~~~~~  242 (291)
                      +|+++||+..  ..++.+||+|||||++.++|.+  ||..+..        ..++|.||+|+...-     ..+. .++.
T Consensus       111 ~I~~~Gf~~~~a~~~g~~~G~GiYfa~~~s~S~~~~Y~~~~~~--------g~~~mllcrV~~G~~~~g~~~~~~-pp~~  181 (221)
T 3blj_A          111 YVNQHGFNRSCAGKNAVSYGKGTYFAVDASYSAKDTYSKPDSN--------GRKHMYVVRVLTGVFTKGRAGLVT-PPPK  181 (221)
T ss_dssp             HHHHHCCCTTTC-----CCCSSEEEESSHHHHHSTTTSCCCTT--------SCEEEEEEEEECCSEEECCTTCSS-CCBS
T ss_pred             HHHHhCCCCcccCCCCCccCCeEECCcchhhhcCcccccCCCC--------CcEEEEEEEEEeCCccCCChhccC-CCcc
Confidence            9999999853  2347799999999999999998  7755421        258999999987531     1110 0000


Q ss_pred             hhHhhhhhccCCCC--CcCCeEEEEecCCeeEEEEEEEEe
Q psy5396         243 ENRRRALAQDSLGG--EVPHKYYVVENSALVKVKYVLVYT  280 (291)
Q Consensus       243 ~~~~~~~~~~~~~~--~~p~~y~VV~n~~~v~~rYLlvy~  280 (291)
                      .........+|.-+  ..| +.|||.|.+++.++||+.|.
T Consensus       182 ~~~~~~~~yDSvv~~~~~~-~e~VVy~~~qiyP~YlI~y~  220 (221)
T 3blj_A          182 NPHNPTDLFDSVTNNTRSP-KLFVVFFDNQAYPEYLITFT  220 (221)
T ss_dssp             STTSTTSBCSEEESCSSSC-SEEEECSTTSEEEEEEEEEE
T ss_pred             cCCCCCCCCCccccCCCCC-CEEEEEcCCeEeeeEEEEEE
Confidence            00000011122211  123 45899999999999999996

>3smj_A Poly [ADP-ribose] polymerase 14; diphtheria toxin like fold, transferase, NAD+, ADP-ribosylat transferase-transferase inhibitor complex; HET: FDR; 1.50A {Homo sapiens} PDB: 3goy_A* 3smi_A* 3se2_A* 4f1l_A* 4f1q_A*

Probab=99.73  E-value=1.1e-17  Score=146.10  Aligned_cols=166  Identities=13%  Similarity=0.162  Sum_probs=111.2

Q ss_pred             CCCeEEeCCcc--hHHHHHHhhcCCCCCCCceeeEEEecCCCCchhhhhhhhcc--------CCCceEEEEcCCCchhHH
Q psy5396         102 QSPSLEEVPRD--QYDSVLNLVSCEPNVAKPDFIFQVQYSPQSSIESNWSKLSL--------GRKKILHAFHGSRLENFH  171 (291)
Q Consensus       102 ~~~~l~~l~~~--e~~~l~~~~~~~~~~~~p~~iF~V~~~~~~~~e~~F~~~~~--------~~~~~~~afHGS~~~N~~  171 (291)
                      ..+.|.+|+++  ||+.|.++...+.+.....-|++|+....   .++|+..++        ..+ .+++|||++.+||.
T Consensus         7 ~~~~l~~L~~~s~Ey~~V~~~f~~t~~~~~I~~I~rI~n~~l---~~~f~~~k~~~~~k~~~~~n-e~~L~HGt~~~~~~   82 (193)
T 3smj_A            7 QNFCVVELLPSDPEYNTVASKFNQTCSHFRIEKIERIQNPDL---WNSYQAKKKTMDAKNGQTMN-EKQLFHGTDAGSVP   82 (193)
T ss_dssp             CCEEEEECCTTSTTHHHHHHHHHHHHTTSEEEEEEEEECHHH---HHHHHHHHHHHHHHSTTCCC-EEEEEEEECGGGHH
T ss_pred             CCEEEEECCCCChHHHHHHHHHHhhCCCCeEEEEEEECCHHH---HHHHHHHHHHHHHhcCCCCC-eEEEEeCCCHHHHH
Confidence            34667777664  78888888765444556777888876432   577775432        134 99999999999999


Q ss_pred             HHHHhccccC--CCCCcccCceeEEecccccccc--ccCCCCCCCCCCCCccccEEEEEeeecCCCcceec-----ccch
Q psy5396         172 SILNFGLQQH--FNKNSLFGQGIYLSSQLGICLI--YSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQ-----EDTE  242 (291)
Q Consensus       172 sIL~~GL~~~--~~~~~~~G~GiYls~~~~~S~~--ys~~~~~w~~S~~g~~l~~valcEvv~~p~~~~~~-----~~~~  242 (291)
                      +|+++||+..  ...+.+||+|||||++.++|.+  ||....        ...++|.||+|+...- .+..     .++.
T Consensus        83 ~I~~~Gf~~~~~~~~~~~~G~GiYfa~~~s~S~~~~y~~~~~--------~g~~~mllcrV~~G~~-~~g~~~~~~pP~~  153 (193)
T 3smj_A           83 HVNRNGFNRSYAGKNAVAYGKGTYFAVNANYSANDTYSRPDA--------NGRKHVYYVRVLTGIY-THGNHSLIVPPSK  153 (193)
T ss_dssp             HHHHHTTCCCCTTGGGSSSCCCEEEESSHHHHTSTTTSCCCT--------TSCEEEEEEEEECCSE-EECCSSCCSCCBS
T ss_pred             HHHHcCCCCccCCCCccccCCeEEecCCcchhcCccccCCCC--------CCcEEEEEEEEEeccc-ccCCCccCCCCCc
Confidence            9999999743  2347899999999999999999  543321        1258899999987531 1111     0110


Q ss_pred             hhHhhhhhccCCCCC--cCCeEEEEecCCeeEEEEEEEEec
Q psy5396         243 ENRRRALAQDSLGGE--VPHKYYVVENSALVKVKYVLVYTR  281 (291)
Q Consensus       243 ~~~~~~~~~~~~~~~--~p~~y~VV~n~~~v~~rYLlvy~~  281 (291)
                      .........+|.-++  .| ..|||.+++++.+.||+.|.+
T Consensus       154 ~~~~~~~~yDSvv~~~~~p-~~~VVf~~~qiyP~YlI~y~~  193 (193)
T 3smj_A          154 NPQNPTDLYDTVTDNVHHP-SLFVAFYDYQAYPEYLITFRK  193 (193)
T ss_dssp             CTTSTTCBCSEEESCSSSC-SEEEECSTTCEEEEEEEEEEC
T ss_pred             cCCCCCCCccceeCCCCCC-CEEEEEeCCceeeEEEEEEeC
Confidence            000001112222222  23 469999999999999999964

>3u9h_A Tankyrase-2; protein-ligand complex, diphtheria toxin like fold, transfer ribosylation; HET: SO4; 1.75A {Homo sapiens} PDB: 3kr8_A* 3kr7_A* 3p0n_A* 3p0p_A* 3p0q_A* 3mhj_A* 3u9y_A* 3ua9_A* 4avu_A* 4avw_A* 3mhk_A* 2rf5_A 3udd_A* 3uh2_A* 3uh4_A* 4dvi_A* 4hlh_A* 4hki_A* 4hkn_A* 4hl5_A* ...

Probab=99.69  E-value=1.8e-16  Score=142.62  Aligned_cols=175  Identities=14%  Similarity=0.146  Sum_probs=111.6

Q ss_pred             hCCCeEEeCCcc--hHHHHHHhhcCCCCC-------------CCceeeEEEecCCCCchhhhhhhhcc--------CCCc
Q psy5396         101 EQSPSLEEVPRD--QYDSVLNLVSCEPNV-------------AKPDFIFQVQYSPQSSIESNWSKLSL--------GRKK  157 (291)
Q Consensus       101 s~~~~l~~l~~~--e~~~l~~~~~~~~~~-------------~~p~~iF~V~~~~~~~~e~~F~~~~~--------~~~~  157 (291)
                      +..+.|..|+++  ||+.|.++...+...             ....-|++|+....   .++|+..++        ..+ 
T Consensus        28 ~~~~~l~~L~~~s~Ey~~V~~~f~~T~~~~~~~~~~~~~~~~~~I~~I~rIqn~~l---~~~y~~~k~~m~~~~~~~~n-  103 (240)
T 3u9h_A           28 GSGTILIDLSPDDKEFQSVEEEMQSTVREHRDGGHAGGIFNRYNILKIQKVCNKKL---WERYTHRRKEVSEENHNHAN-  103 (240)
T ss_dssp             --CCEEEECCTTSHHHHHHHHHHHHTCCCCTTTTTTTCSCSCEEEEEEEEEECHHH---HHHHHHHHHHHHHTTTTCCC-
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHhcccccccccccccccCCcEEEEEEEecCHhH---HHHHHHHHHHHHHhcCCCCc-
Confidence            356888888775  799999888665321             23345677776432   567765432        234 


Q ss_pred             eEEEEcCCCchhHHHHHHhccccCC-CCCcccCceeEEeccccccccccCCC---CCCC-C--CCCCccccEEEEEeeec
Q psy5396         158 ILHAFHGSRLENFHSILNFGLQQHF-NKNSLFGQGIYLSSQLGICLIYSPYS---AGWG-G--SCVGSELSIVSLCSIVD  230 (291)
Q Consensus       158 ~~~afHGS~~~N~~sIL~~GL~~~~-~~~~~~G~GiYls~~~~~S~~ys~~~---~~w~-~--S~~g~~l~~valcEvv~  230 (291)
                      .+++|||++  ++.+|+++||+... .++.+||+|||||++.++|..||...   .+.+ +  ..+....++|.||||+.
T Consensus       104 e~~LfHGt~--~~~~I~~~Gf~~~~~~~g~~~G~GiYfa~~~s~S~~y~~~~~~~~~~~~~~d~~~~~~~~~mlLc~V~l  181 (240)
T 3u9h_A          104 ERMLFHGSP--FVNAIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPVHKDRSCYICHRQLLFCRVTL  181 (240)
T ss_dssp             EEEEEECCT--THHHHHHHCCCGGGCBTTSTTCSBEEEESSHHHHHTTTTSGGGTTCCTTTCCTTCSSSCEEEEEEEEEC
T ss_pred             eEEEEechH--hHHHHHHcCCCcccccCCCcceeeEEecCChhhhhhhhhccccccccccccccccccCceEEEEEEEec
Confidence            999999998  57799999998653 45789999999999999999999642   1111 1  11112369999999987


Q ss_pred             CCCcceecccch-h--hHhhhh--hccCCCCCcCCeEEEEecCCeeEEEEEEEEecCC
Q psy5396         231 DPDQVKCQEDTE-E--NRRRAL--AQDSLGGEVPHKYYVVENSALVKVKYVLVYTRHK  283 (291)
Q Consensus       231 ~p~~~~~~~~~~-~--~~~~~~--~~~~~~~~~p~~y~VV~n~~~v~~rYLlvy~~~~  283 (291)
                      ... .+...+.. .  .+....  +..+.+ .+-.+.|||.|++++.++||+.|.-..
T Consensus       182 G~~-~~~~~~~~~~~pP~gyDSvvg~~~~~-~l~~~E~VVy~~~qi~P~YlI~y~~~~  237 (240)
T 3u9h_A          182 GKS-FLQFSAMKMAHSPPGHHSVTGRPSVN-GLALAEYVIYRGEQAYPEYLITYQIMR  237 (240)
T ss_dssp             CSE-EEEEECC--CCCCTTCSEEEEEESSC-TTCCCEEEESCGGGEEEEEEEEEEECC
T ss_pred             Cce-EeecCcccccCCCCCCCceecCCCCC-CCCCCEEEEEcccceeEEEEEEEEccC
Confidence            653 22111100 0  000000  111111 122346999999999999999997543

>3hkv_A PARP-10, poly [ADP-ribose] polymerase 10; NAD, transferase, structural genomics, structural genomics consortium, SGC, cytoplasm, glycosyltransferase; HET: 3AB; 2.10A {Homo sapiens}

Probab=99.68  E-value=9.5e-17  Score=142.41  Aligned_cols=167  Identities=13%  Similarity=0.179  Sum_probs=111.6

Q ss_pred             CCeEEeCCcc--hHHHHHHhhcCCCCC----CCceeeEEEecCCCCchhhhhhhhcc--------CCCceEEEEcCCCch
Q psy5396         103 SPSLEEVPRD--QYDSVLNLVSCEPNV----AKPDFIFQVQYSPQSSIESNWSKLSL--------GRKKILHAFHGSRLE  168 (291)
Q Consensus       103 ~~~l~~l~~~--e~~~l~~~~~~~~~~----~~p~~iF~V~~~~~~~~e~~F~~~~~--------~~~~~~~afHGS~~~  168 (291)
                      .|.|..|+++  ||+.|.++...+...    ....-|++|+...   ..++|+..++        ..+ .+++|||++.+
T Consensus        10 ~~~L~~L~~~s~Ey~~V~~~F~~t~~~~~~~~~I~~I~RIqn~~---l~~~f~~~k~~m~~k~~~~~n-e~~LfHGt~~~   85 (217)
T 3hkv_A           10 WNNLERLAENTGEFQEVVRAFYDTLDAARSSIRVVRVERVSHPL---LQQQYELYRERLLQRCERRPV-EQVLYHGTTAP   85 (217)
T ss_dssp             CCCEEECCSSSHHHHHHHHHHHHTTGGGGGTEEEEEEEEECCHH---HHHHHHHHHHHHHHHCCSSCS-EEEEEEEECGG
T ss_pred             cccceECCCCChHHHHHHHHHHhhcCCcCCCceEEEEEEECChh---HHHHHHHHHHHHHHhcCCCCc-eEEEEeCCCHH
Confidence            4777778765  799998887664332    3445567766532   2577775432        234 99999999999


Q ss_pred             hHHHHHHhcccc--CCCCCcccCceeEEeccccccc--cccCCCCCCCCCCCCccccEEEEEeeecCCCcceec-----c
Q psy5396         169 NFHSILNFGLQQ--HFNKNSLFGQGIYLSSQLGICL--IYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQ-----E  239 (291)
Q Consensus       169 N~~sIL~~GL~~--~~~~~~~~G~GiYls~~~~~S~--~ys~~~~~w~~S~~g~~l~~valcEvv~~p~~~~~~-----~  239 (291)
                      |+.+|+++||+.  +..++.+||+|||||++.++|.  .||....        ...++|.||+|+...- .+..     .
T Consensus        86 ~~~~I~~~GF~~~~~g~~g~~~G~GiYFA~~~s~S~~~~Y~~~~~--------~g~~~m~lcrVl~G~~-~~g~~~~~~P  156 (217)
T 3hkv_A           86 AVPDICAHGFNRSFCGRNATVYGKGVYFAKRASLSVQDRYSPPNA--------DGHKAVFVARVLTGDY-GQGRRGLRAP  156 (217)
T ss_dssp             GHHHHHHHCSCTTTSCCCCCTTCSSEEEESSHHHHTSTTTSCCCT--------TSEEEEEEEEEECCSE-EECCTTCSSS
T ss_pred             HHHHHHhcCCcccccCcchhccccceeccCCcccccccccccccC--------CCceEEEEEEEEcccc-ccCCCccCCC
Confidence            999999999963  3345789999999999999997  5875432        1258999999987542 2111     0


Q ss_pred             cchhhHhhhhhccCCCCC--cCCeEEEEecCCeeEEEEEEEEecCC
Q psy5396         240 DTEENRRRALAQDSLGGE--VPHKYYVVENSALVKVKYVLVYTRHK  283 (291)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~--~p~~y~VV~n~~~v~~rYLlvy~~~~  283 (291)
                      ++..........+|.-++  .| +.|||.+.+++.+.||+.|....
T Consensus       157 P~~~~~~~~~~yDSvvd~~~np-~~~VVf~~~qiyPeYLI~y~~~~  201 (217)
T 3hkv_A          157 PLRGPGHVLLRYDSAMDCICQP-SIFVIFHDTQALPTHLITCEHVP  201 (217)
T ss_dssp             CBCCTTCSSSBCSEEESCSSSC-CEEEECCTTSEEEEEEEEEEECC
T ss_pred             CCCccCCCCCceeEEECCCCCC-CEEEEEcCCcCceeEEEEEecCC
Confidence            000000000112222222  23 56999999999999999998765

>1wfx_A Probable RNA 2'-phosphotransferase; tRNA splicing, NAD, structural GE riken structural genomics/proteomics initiative, RSGI; 2.80A {Aeropyrum pernix} SCOP: d.166.1.5

Probab=92.30  E-value=0.095  Score=44.83  Aligned_cols=38  Identities=21%  Similarity=0.258  Sum_probs=31.4

Q ss_pred             EEEEcCCCchhHHHHHHhccccCCCCCcccCceeEEeccccccc
Q psy5396         159 LHAFHGSRLENFHSILNFGLQQHFNKNSLFGQGIYLSSQLGICL  202 (291)
Q Consensus       159 ~~afHGS~~~N~~sIL~~GL~~~~~~~~~~G~GiYls~~~~~S~  202 (291)
                      -++|||+...||-+|+.+||..|      -...|.||.+..++.
T Consensus        92 ~~lyHGT~~~~~~~I~~~GL~~m------~R~hVHLs~~~~~a~  129 (186)
T 1wfx_A           92 PILYHGTTEEALPLIMERGIMRG------RRLKVHLTSSLEDAV  129 (186)
T ss_dssp             SEEEECCBGGGHHHHHHHCBCCC------SSSSEEEESCHHHHH
T ss_pred             CEEEEeCCHHHHHHHHHhCCCCC------CCCEEEEecCCCCCe
Confidence            38899999999999999999854      235789999877663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	291
d1efya2	215	d.166.1.2 (A:797-1011) Poly(ADP-ribose) polymerase	6e-08
d1gs0a2	217	d.166.1.2 (A:341-557) Poly(ADP-ribose) polymerase,	4e-06

>d1efya2 d.166.1.2 (A:797-1011) Poly(ADP-ribose) polymerase, C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 215

class: Alpha and beta proteins (a+b)
fold: ADP-ribosylation
superfamily: ADP-ribosylation
family: Poly(ADP-ribose) polymerase, C-terminal domain
domain: Poly(ADP-ribose) polymerase, C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 50.1 bits (119), Expect = 6e-08
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 27/148 (18%)

Query: 159 LHAFHGSRLENFHSILNFGLQ----QHFNKNSLFGQGIYLSSQLGICLIYSPYSAGWGGS 214
              +HGSR  NF  IL+ GL+    +      +FG+GIY +  +     Y   S      
Sbjct: 62  QLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQADPIG 121

Query: 215 CVG-----------------------SELSIVSLCSIVDDPDQVKCQEDTEENRRRALAQ 251
            +                         + S+  L     DP      +  E      ++ 
Sbjct: 122 LILLGEVALGNMYELKNASHITKLPKGKHSVKGLGKTAPDPTATTTLDGVEVPLGNGIST 181

Query: 252 DSLGGEVPHKYYVVENSALVKVKYVLVY 279
                 + +  Y+V + A V +KY+L  
Sbjct: 182 GINDTCLLYNEYIVYDVAQVNLKYLLKL 209

>d1gs0a2 d.166.1.2 (A:341-557) Poly(ADP-ribose) polymerase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 217

class: Alpha and beta proteins (a+b)
fold: ADP-ribosylation
superfamily: ADP-ribosylation
family: Poly(ADP-ribose) polymerase, C-terminal domain
domain: Poly(ADP-ribose) polymerase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.3 bits (104), Expect = 4e-06
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 12/98 (12%)

Query: 133 IFQVQYSPQSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNFGLQ----QHFNKNSLF 188
           +F+V+       E    +  L  + +L  +HGSRL N+  IL+ GL+    +      +F
Sbjct: 40  VFEVE----KEGEKEAFREDLPNRMLL--WHGSRLSNWVGILSHGLRVAPPEAPITGYMF 93

Query: 189 GQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLC 226
           G+GIY +        Y   S       +   LS V+L 
Sbjct: 94  GKGIYFADMSSKSANYCFASRLKNTGLLL--LSEVALG 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	291
d1efya2	215	Poly(ADP-ribose) polymerase, C-terminal domain {Ch	99.87
d1gs0a2	217	Poly(ADP-ribose) polymerase, C-terminal domain {Mo	99.87
d1wfxa_	180	Probable RNA 2'-phosphotransferase KptA {Aeropyrum	89.61

>d1efya2 d.166.1.2 (A:797-1011) Poly(ADP-ribose) polymerase, C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: ADP-ribosylation
superfamily: ADP-ribosylation
family: Poly(ADP-ribose) polymerase, C-terminal domain
domain: Poly(ADP-ribose) polymerase, C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.87  E-value=4.3e-22  Score=174.50  Aligned_cols=118  Identities=20%  Similarity=0.288  Sum_probs=95.7

Q ss_pred             CCeEEeCCcc--hHHHHHHhhcCCCCC------CCceeeEEEecCCCCchhhhhhhhccCCCceEEEEcCCCchhHHHHH
Q psy5396         103 SPSLEEVPRD--QYDSVLNLVSCEPNV------AKPDFIFQVQYSPQSSIESNWSKLSLGRKKILHAFHGSRLENFHSIL  174 (291)
Q Consensus       103 ~~~l~~l~~~--e~~~l~~~~~~~~~~------~~p~~iF~V~~~~~~~~e~~F~~~~~~~~~~~~afHGS~~~N~~sIL  174 (291)
                      .|.|+.|+++  |++.|.++...+..+      ...+.||+|+...+   .++|++.++..+ .+++|||++.+||.+||
T Consensus         2 ~~~i~~l~~~S~eyk~I~~~f~~t~~~~~~~~~~~I~~I~rI~~~~~---~~~f~~~~~~~n-~~~LfHGt~~~~~~~Il   77 (215)
T d1efya2           2 RTDIKVVDKDSEEAKIIKQYVKNTHAATHNAYDLKVVEIFRIEREGE---SQRYKPFKQLHN-RQLLWHGSRTTNFAGIL   77 (215)
T ss_dssp             CEEEEECCTTSHHHHHHHHHHHHTCCGGGCSEEEEEEEEEEEEETTH---HHHHGGGGGSSC-EEEEEEEECGGGHHHHH
T ss_pred             CCeEEECCCCCHHHHHHHHHHHhhCCCccCCCcceEEEEEEEcCcch---HHHHHHhhccCc-EEEEEecCCHHHHHHHH
Confidence            4778888776  799999988765433      23677899987654   688998877777 99999999999999999


Q ss_pred             HhccccCC----CCCcccCceeEEeccccccccccCCCCCCCCCCCCccccEEEEEeeecC
Q psy5396         175 NFGLQQHF----NKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDD  231 (291)
Q Consensus       175 ~~GL~~~~----~~~~~~G~GiYls~~~~~S~~ys~~~~~w~~S~~g~~l~~valcEvv~~  231 (291)
                      ++||+..+    .++++||+|||||+++++|..||..+.+++       .+.|.||||+..
T Consensus        78 ~~Gf~~~~~~~~~~g~~~G~GiYfa~~~s~S~~Y~~~~~~~~-------~~~mll~~V~lG  131 (215)
T d1efya2          78 SQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQADP-------IGLILLGEVALG  131 (215)
T ss_dssp             HHCSCCCCTTSCGGGSTTSSSEEEBSSHHHHHGGGCCCSSSC-------EEEEEEEEEECC
T ss_pred             HcCCCCCcccccccCcceeeeEEecCccchhhccccCCccCC-------eeEEEEEEEEec
Confidence            99998654    346799999999999999999997655432       578999999864

>d1gs0a2 d.166.1.2 (A:341-557) Poly(ADP-ribose) polymerase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: ADP-ribosylation
superfamily: ADP-ribosylation
family: Poly(ADP-ribose) polymerase, C-terminal domain
domain: Poly(ADP-ribose) polymerase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=6.6e-22  Score=173.57  Aligned_cols=116  Identities=18%  Similarity=0.256  Sum_probs=89.7

Q ss_pred             CCeEEeCCcc--hHHHHHHhhcCCCCCC------CceeeEEEecCCCCchhhhhhhhccCCCceEEEEcCCCchhHHHHH
Q psy5396         103 SPSLEEVPRD--QYDSVLNLVSCEPNVA------KPDFIFQVQYSPQSSIESNWSKLSLGRKKILHAFHGSRLENFHSIL  174 (291)
Q Consensus       103 ~~~l~~l~~~--e~~~l~~~~~~~~~~~------~p~~iF~V~~~~~~~~e~~F~~~~~~~~~~~~afHGS~~~N~~sIL  174 (291)
                      .|.|++|+++  ||+.|.+++..+..+.      ..+-||+|+...+   +++|...  ..+ .+++||||+.+||.+||
T Consensus         2 ~c~i~~l~~~s~ey~~I~~~~~~t~~~~~~~~~~~I~~I~~v~r~~e---~~~~~~~--~~n-~~~LfHGT~~~n~~~Il   75 (217)
T d1gs0a2           2 HCALRPLDHESNEFKVISQYLQSTHAPTHKDYTMTLLDVFEVEKEGE---KEAFRED--LPN-RMLLWHGSRLSNWVGIL   75 (217)
T ss_dssp             TEEEEECCTTSHHHHHHHHHHHHTCCTTCCSEEEEEEEEEEEEETTH---HHHSCTT--CSC-EEEEEEEECGGGHHHHH
T ss_pred             CCEEEEcCCCCHHHHHHHHHHHhhCCCccCCCcceEEEEEEEcchhH---HHHhhhc--CCc-eEEEEecccHHHHHHHH
Confidence            4788888776  7999999887665443      3445788887654   5666642  234 89999999999999999


Q ss_pred             HhccccCC----CCCcccCceeEEeccccccccccCCCCCCCCCCCCccccEEEEEeeecC
Q psy5396         175 NFGLQQHF----NKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDD  231 (291)
Q Consensus       175 ~~GL~~~~----~~~~~~G~GiYls~~~~~S~~ys~~~~~w~~S~~g~~l~~valcEvv~~  231 (291)
                      ++||+..+    .+|.+||+|||||+++++|..||..+..++       .++|.||||+..
T Consensus        76 ~~Gf~~~~~~~~~~g~~fG~GiYfa~~~s~s~~y~~~~~~~~-------~~~m~l~~V~lG  129 (217)
T d1gs0a2          76 SHGLRVAPPEAPITGYMFGKGIYFADMSSKSANYCFASRLKN-------TGLLLLSEVALG  129 (217)
T ss_dssp             HHCSCCCCSSSCGGGSTTSSSEEEBSCHHHHHGGGCCCSSSC-------EEEEEEEEEECC
T ss_pred             HcCCCCCCccCcccceeeeccceeccccccccccccCCcCCC-------eEEEEEEEEEec
Confidence            99998654    346899999999999999999997765433       467888888765

>d1wfxa_ d.166.1.5 (A:) Probable RNA 2'-phosphotransferase KptA {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: ADP-ribosylation
superfamily: ADP-ribosylation
family: Tpt1/KptA
domain: Probable RNA 2'-phosphotransferase KptA
species: Aeropyrum pernix [TaxId: 56636]

Probab=89.61  E-value=0.12  Score=41.93  Aligned_cols=38  Identities=21%  Similarity=0.258  Sum_probs=30.2

Q ss_pred             EEEEcCCCchhHHHHHHhccccCCCCCcccCceeEEeccccccc
Q psy5396         159 LHAFHGSRLENFHSILNFGLQQHFNKNSLFGQGIYLSSQLGICL  202 (291)
Q Consensus       159 ~~afHGS~~~N~~sIL~~GL~~~~~~~~~~G~GiYls~~~~~S~  202 (291)
                      ..+|||+..++|-+|+.+||..|-      =.-|-||.+...|.
T Consensus        90 ~~lyHGT~~~~~~~I~~~GL~~m~------R~hVHls~~~~~a~  127 (180)
T d1wfxa_          90 PILYHGTTEEALPLIMERGIMRGR------RLKVHLTSSLEDAV  127 (180)
T ss_dssp             SEEEECCBGGGHHHHHHHCBCCCS------SSSEEEESCHHHHH
T ss_pred             ceEEecCcHHHHHHHHHhcccccC------CCeEEeccCcccce
Confidence            388999999999999999998531      13588998876553