Psyllid ID: psy5402

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MTNNPTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK
Secondary Structure (PSIPRED)
cccccHHHccccccccHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHcEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcEEcccHHHHHHHccEEEEcHccEEcccccEEEEcccccccEEEEEccccccccHHHHHccHHHHHHHHHccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mtnnptdlinedtdTSITLQKYVAAFidypkpliaivngpaigisATTLALCDIVFASdtaillnhpvfvlqatfhtpftlrgmtpegcssvlfprifgnSVASELLYTGRKLNAQEALQYGFvsgvftteeierdlwprihawaklppqsmiFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK
Flexible Loop (DISEMBL)
mtnnptdlinedtDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAitaffnrk
Low Complexity Region (SEG)
MTNNPTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK
Disordered region (IsUnstruct)
**************TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFF***
Disordered Region (DISOPRED)
**NNPT**********ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK
Disordered Region (DISEMBL)
MTNNPTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK
Disordered Region (DISPRO)
MTNNPTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN*K
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTNNPTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	198	2.2.26 [Sep-21-2011]
Q5XIC0	391	Enoyl-CoA delta isomerase	yes	N/A	0.863	0.437	0.469	2e-43
Q9WUR2	391	Enoyl-CoA delta isomerase	yes	N/A	0.878	0.445	0.456	3e-43
O75521	394	Enoyl-CoA delta isomerase	yes	N/A	0.919	0.461	0.427	4e-42
Q9WTK2	593	Chromodomain Y-like prote	no	N/A	0.909	0.303	0.390	3e-34
Q9Y232	598	Chromodomain Y-like prote	no	N/A	0.909	0.301	0.390	1e-33
Q6AYK9	589	Chromodomain Y-like prote	no	N/A	0.909	0.305	0.390	1e-33
Q9Y6F8	540	Testis-specific chromodom	no	N/A	0.853	0.312	0.370	8e-30
Q8N8U2	506	Chromodomain Y-like prote	no	N/A	0.914	0.357	0.352	3e-29
Q9Y6F7	541	Testis-specific chromodom	no	N/A	0.853	0.312	0.364	7e-29
P41942	255	Uncharacterized protein B	no	N/A	0.828	0.643	0.355	1e-21

>sp|Q5XIC0|ECI2_RAT Enoyl-CoA delta isomerase 2, mitochondrial OS=Rattus norvegicus GN=Eci2 PE=1 SV=1

 Score =  174 bits (442), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 86/183 (46%), Positives = 117/183 (63%), Gaps = 12/183 (6%)

Query: 16  SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATF 75
           +I L+++V  FID+PKPL+A+VNGPA+GIS T L L D V+ASD            +ATF
Sbjct: 218 AIVLREFVNTFIDFPKPLVAVVNGPAVGISVTLLGLFDAVYASD------------RATF 265

Query: 76  HTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIER 135
           HTPF+  G +PE CSS  FP++ G++ A+E+L  G+KL A+EA   G V+ VF     E 
Sbjct: 266 HTPFSHLGQSPEACSSYTFPKMMGSAKAAEMLLFGKKLTAREAWAQGLVTEVFPESTFET 325

Query: 136 DLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFF 195
           ++W R+  +AKLPP SM  +K+L+R      LH  N+ EC  L  RW SEE +NAI +F 
Sbjct: 326 EVWTRLKTYAKLPPNSMRISKELIRKNEKEKLHAVNEEECTTLRARWLSEECINAIMSFV 385

Query: 196 NRK 198
            RK
Sbjct: 386 TRK 388

Able to isomerize both 3-cis and 3-trans double bonds into the 2-trans form in a range of enoyl-CoA species. Has a preference for 3-trans substrates.
Rattus norvegicus (taxid: 10116)
EC: 5EC: .EC: 3EC: .EC: 3EC: .EC: 8

>sp|Q9WUR2|ECI2_MOUSE Enoyl-CoA delta isomerase 2, mitochondrial OS=Mus musculus GN=Eci2 PE=1 SV=2

 Score =  174 bits (442), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 85/186 (45%), Positives = 120/186 (64%), Gaps = 12/186 (6%)

Query: 13  TDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQ 72
           ++ ++ L+ +V +FID+PKPL+A+VNGPA+GIS T L L D VFASD            +
Sbjct: 215 SNGAVLLRDFVNSFIDFPKPLVAVVNGPAVGISVTLLGLFDAVFASD------------R 262

Query: 73  ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 132
           ATFHTPF+  G +PE CSS  FP++ G++ A+E+L  G+KL A+EA   G V+ VF    
Sbjct: 263 ATFHTPFSQLGQSPEACSSYTFPKMMGSAKAAEMLLFGKKLTAREAWAQGLVTEVFPEST 322

Query: 133 IERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAIT 192
            E ++W R+  +AKLPP +M  +K+L+R      L+  N  EC  L+ RW SEE MNAI 
Sbjct: 323 FETEVWTRLKTYAKLPPNAMRISKELIRKNEKEKLYAVNAEECTTLQARWLSEECMNAIM 382

Query: 193 AFFNRK 198
           +F +RK
Sbjct: 383 SFVSRK 388

Able to isomerize both 3-cis and 3-trans double bonds into the 2-trans form in a range of enoyl-CoA species. Has a preference for 3-trans substrates.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 8

>sp|O75521|ECI2_HUMAN Enoyl-CoA delta isomerase 2, mitochondrial OS=Homo sapiens GN=ECI2 PE=1 SV=4

 Score =  171 bits (432), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 83/194 (42%), Positives = 120/194 (61%), Gaps = 12/194 (6%)

Query: 5   PTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILL 64
           P  +  +  + ++ L+++V  FID+PKPLIA+VNGPA+GIS T L L D V+ASD     
Sbjct: 210 PGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASD----- 264

Query: 65  NHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFV 124
                  +ATFHTPF+  G +PEGCSS  FP+I   + A+E+L  G+KL A EA   G V
Sbjct: 265 -------RATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLV 317

Query: 125 SGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWES 184
           + VF     ++++W R+ A+AKLPP ++  +K+++R      LH  N  EC  L+ RW S
Sbjct: 318 TEVFPDSTFQKEVWTRLKAFAKLPPNALRISKEVIRKREREKLHAVNAEECNVLQGRWLS 377

Query: 185 EEFMNAITAFFNRK 198
           +E  NA+  F +RK
Sbjct: 378 DECTNAVVNFLSRK 391

Able to isomerize both 3-cis and 3-trans double bonds into the 2-trans form in a range of enoyl-CoA species. Has a preference for 3-trans substrates.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 8

>sp|Q9WTK2|CDYL_MOUSE Chromodomain Y-like protein OS=Mus musculus GN=Cdyl PE=1 SV=1

 Score =  144 bits (364), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 75/192 (39%), Positives = 114/192 (59%), Gaps = 12/192 (6%)

Query: 7   DLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNH 66
           D   E T  +  ++ +V  FI + KP+I  VNGPAIG+ A+ L LCD+V+A++       
Sbjct: 410 DRKRESTKMADAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANE------- 462

Query: 67  PVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSG 126
                +A F TP+T  G +P+GCS+V+FP+I G + A+E+L++GRKL AQEA   G VS 
Sbjct: 463 -----KAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLFSGRKLTAQEACGKGLVSQ 517

Query: 127 VFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEE 186
           VF      +++  RI   A   P  +  +K LVR  M   L +AN+REC+ L++ W S +
Sbjct: 518 VFWPGTFTQEVMVRIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLKKIWGSAQ 577

Query: 187 FMNAITAFFNRK 198
            M+++  +  RK
Sbjct: 578 GMDSMLKYLQRK 589

Has histone acetyltransferase activity. May play a role in histone hyperacetylation during spermatid maturation. Acts as repressor of transcription.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|Q9Y232|CDYL1_HUMAN Chromodomain Y-like protein OS=Homo sapiens GN=CDYL PE=1 SV=2

 Score =  142 bits (359), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 75/192 (39%), Positives = 113/192 (58%), Gaps = 12/192 (6%)

Query: 7   DLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNH 66
           D   E T  +  ++ +V  FI + KP+I  VNGPAIG+ A+ L LCD+V+A++       
Sbjct: 415 DRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANE------- 467

Query: 67  PVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSG 126
                +A F TP+T  G +P+GCS+V+FP+I G + A+E+L +GRKL AQEA   G VS 
Sbjct: 468 -----KAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQ 522

Query: 127 VFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEE 186
           VF      +++  RI   A   P  +  +K LVR  M   L +AN+REC+ L++ W S +
Sbjct: 523 VFWPGTFTQEVMVRIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLKKIWGSAQ 582

Query: 187 FMNAITAFFNRK 198
            M+++  +  RK
Sbjct: 583 GMDSMLKYLQRK 594

Acts as repressor of transcription (By similarity). Has histone acetyltransferase activity, with a preference for histone H4.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|Q6AYK9|CDYL_RAT Chromodomain Y-like protein OS=Rattus norvegicus GN=Cdyl PE=2 SV=1

 Score =  142 bits (359), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 75/192 (39%), Positives = 112/192 (58%), Gaps = 12/192 (6%)

Query: 7   DLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNH 66
           D   E T  +  ++ +V  FI + KP+I  VNGPAIG+ A+ L LCD+V+A++       
Sbjct: 406 DRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANE------- 458

Query: 67  PVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSG 126
                +A F TP+T  G +P+GCS+V+FP+I G + A+E+L +GRKL AQEA   G VS 
Sbjct: 459 -----KAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQ 513

Query: 127 VFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEE 186
           VF      +++  RI   A   P  +  +K LVR  M   L +AN+REC  L++ W S +
Sbjct: 514 VFWPGTFTQEVMVRIKELASCNPIVLEESKALVRCNMKMELEQANERECDALKKIWGSAQ 573

Query: 187 FMNAITAFFNRK 198
            M+++  +  RK
Sbjct: 574 GMDSMLKYLQRK 585

Has histone acetyltransferase activity. May play a role in histone hyperacetylation during spermatid maturation. Acts as repressor of transcription.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|Q9Y6F8|CDY1_HUMAN Testis-specific chromodomain protein Y 1 OS=Homo sapiens GN=CDY1 PE=1 SV=1

 Score =  130 bits (326), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 67/181 (37%), Positives = 105/181 (58%), Gaps = 12/181 (6%)

Query: 18  TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHT 77
           T++ +V  FI + KP++  VNGPAIG+ A+ L LCD+V+A++            +A F T
Sbjct: 368 TIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANE------------KAWFQT 415

Query: 78  PFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDL 137
           P+T  G +P+GCSS+ FP++ G + A+E+L  GRKL A+EA   G VS VF T    +++
Sbjct: 416 PYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEV 475

Query: 138 WPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNR 197
             +I   A   P  +   K LVR  +   L +AN+REC+ L + W S + + ++  +   
Sbjct: 476 MIQIKELASYNPIVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVEN 535

Query: 198 K 198
           K
Sbjct: 536 K 536

Has histone acetyltransferase activity, with a preference for histone H4.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|Q8N8U2|CDYL2_HUMAN Chromodomain Y-like protein 2 OS=Homo sapiens GN=CDYL2 PE=1 SV=2

 Score =  128 bits (321), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 68/193 (35%), Positives = 111/193 (57%), Gaps = 12/193 (6%)

Query: 6   TDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLN 65
           +D   E T  +  ++ +V AFI + KP++  +NGPA+G+ A+ L LCDIV+AS+      
Sbjct: 322 SDRRKESTRIAEAIRDFVKAFIQFKKPIVVAINGPALGLGASILPLCDIVWASE------ 375

Query: 66  HPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVS 125
                 +A F TP+    +TP GCSS  FP+I G ++A+E+L+ GRKL AQEA   G VS
Sbjct: 376 ------KAWFQTPYATIRLTPAGCSSYTFPQILGVALANEMLFCGRKLTAQEACSRGLVS 429

Query: 126 GVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESE 185
            VF      +++  R+   A      +  +K LVR  + S+L + N++EC  L++ W S 
Sbjct: 430 QVFWPTTFSQEVMLRVKEMASCSAVVLEESKCLVRSFLKSVLEDVNEKECLMLKQLWSSS 489

Query: 186 EFMNAITAFFNRK 198
           + ++++ ++   K
Sbjct: 490 KGLDSLFSYLQDK 502

Homo sapiens (taxid: 9606)

>sp|Q9Y6F7|CDY2_HUMAN Testis-specific chromodomain protein Y 2 OS=Homo sapiens GN=CDY2A PE=1 SV=1

 Score =  127 bits (318), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 104/181 (57%), Gaps = 12/181 (6%)

Query: 18  TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHT 77
           T++ +V  FI + KP++  VNGPAIG+ A+ L LCD+V+A++            +A F T
Sbjct: 369 TIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANE------------KAWFQT 416

Query: 78  PFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDL 137
           P+T  G +P+GCSS+ FP++ G + A+E+L  GRKL A+EA   G VS VF T    +++
Sbjct: 417 PYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEV 476

Query: 138 WPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNR 197
             +I   A      +   K LVR  +   L +AN+REC+ L + W S + + ++  +   
Sbjct: 477 MIQIKELASYNAIVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVEN 536

Query: 198 K 198
           K
Sbjct: 537 K 537

May have histone acetyltransferase activity.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|P41942|YKB4_CAEEL Uncharacterized protein B0272.4 OS=Caenorhabditis elegans GN=B0272.4 PE=3 SV=1

 Score =  103 bits (256), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/177 (35%), Positives = 90/177 (50%), Gaps = 13/177 (7%)

Query: 22  YVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTL 81
           +V   I +PKP+IA+VNG A+G+S T L + D V A DTA            TF TPF  
Sbjct: 87  FVDILIAFPKPIIALVNGHAVGVSVTMLGVMDAVIAIDTA------------TFATPFAD 134

Query: 82  RGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRI 141
            G+ PE CSS   PRI G+  A+ L+    K  A EA   G V+ +      E+D    I
Sbjct: 135 IGVCPEACSSYTLPRIMGHQKAAALMMFSEKFTAHEAHIAGLVTQILPAATFEKDAKKII 194

Query: 142 HAWAKLPPQSMIFAKQLVRVPMLS-MLHEANKRECKRLEERWESEEFMNAITAFFNR 197
             ++KL P +M  AK+L+R   +   L   N++E   L   +  E+ +  +TA F +
Sbjct: 195 DRYSKLSPITMKVAKELMRTTQIKDELLTVNRKEQVHLNGMFSHEDTIARLTAKFVK 251

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
395512052	395	PREDICTED: enoyl-CoA delta isomerase 2,	0.919	0.460	0.474	3e-46
449492360	399	PREDICTED: LOW QUALITY PROTEIN: enoyl-Co	0.924	0.458	0.466	2e-45
213983105	358	enoyl-CoA delta isomerase 2 [Xenopus (Si	0.873	0.483	0.486	4e-45
156356425	393	predicted protein [Nematostella vectensi	0.848	0.427	0.516	8e-45
242008850	264	conserved hypothetical protein [Pediculu	0.904	0.678	0.477	1e-44
326917047	360	PREDICTED: peroxisomal 3,2-trans-enoyl-C	0.919	0.505	0.458	2e-44
164664454	394	enoyl-CoA delta isomerase 2, mitochondri	0.919	0.461	0.466	4e-44
395830427	364	PREDICTED: enoyl-CoA delta isomerase 2,	0.873	0.475	0.470	4e-44
47228520	310	unnamed protein product [Tetraodon nigro	0.848	0.541	0.477	4e-44
449278168	379	Peroxisomal 3,2-trans-enoyl-CoA isomeras	0.919	0.480	0.443	5e-44

>gi|395512052|ref|XP_003760261.1| PREDICTED: enoyl-CoA delta isomerase 2, mitochondrial [Sarcophilus harrisii]

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 92/194 (47%), Positives = 126/194 (64%), Gaps = 12/194 (6%)

Query: 5   PTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILL 64
           P D+  +  ++ + L+ +V  FID+ KPL+A+VNGPA+GIS T L LCDIV+A+D     
Sbjct: 211 PDDIEKKIKESFVLLRTFVDHFIDFSKPLVAVVNGPAVGISVTLLGLCDIVYATD----- 265

Query: 65  NHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFV 124
                  +ATFHTPF   G +PE CSS  FP+I G   A+E+L  GRKL AQEA   G +
Sbjct: 266 -------RATFHTPFIQLGQSPEACSSYTFPKIMGPIKAAEMLIFGRKLTAQEAYAQGLI 318

Query: 125 SGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWES 184
           + VF     +R++W R+ A+A+LPP++M+F+KQL+R      LH+ N  EC  L ERW S
Sbjct: 319 TEVFPDSTFQREVWTRLKAYAQLPPKAMMFSKQLIRSFEKETLHKVNFEECTLLCERWVS 378

Query: 185 EEFMNAITAFFNRK 198
           +EFMNA+  F NRK
Sbjct: 379 DEFMNAVVNFINRK 392

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449492360|ref|XP_004175572.1| PREDICTED: LOW QUALITY PROTEIN: enoyl-CoA delta isomerase 2, mitochondrial [Taeniopygia guttata]

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 91/195 (46%), Positives = 124/195 (63%), Gaps = 12/195 (6%)

Query: 4   NPTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAIL 63
            P ++     D ++ L+ +V  FID+PKPLIA+VNGPAIGI  T LALCD+V+ASD    
Sbjct: 214 QPGEMEKMAKDGAVLLKDFVGHFIDFPKPLIAVVNGPAIGICVTVLALCDLVYASD---- 269

Query: 64  LNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGF 123
                   +ATFH+PF+  G +PEGCSS LFP+I G + ASE+L   +KL A EA   G 
Sbjct: 270 --------RATFHSPFSQLGQSPEGCSSYLFPKIMGLAKASEMLLFNKKLTAAEACAQGL 321

Query: 124 VSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWE 183
           V+ VF     ++++W R+ A+A LP  S+  +KQL+R      LH  N REC+ L ERW 
Sbjct: 322 VTEVFPDRSFQKEVWARLEAYASLPKNSLAVSKQLLRSMEKEKLHAVNSRECEVLMERWL 381

Query: 184 SEEFMNAITAFFNRK 198
           S+E +NAI +FF +K
Sbjct: 382 SDECINAIVSFFQKK 396

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|213983105|ref|NP_001135696.1| enoyl-CoA delta isomerase 2 [Xenopus (Silurana) tropicalis] gi|197246232|gb|AAI68804.1| Unknown (protein for MGC:188981) [Xenopus (Silurana) tropicalis]

 Score =  186 bits (472), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 90/185 (48%), Positives = 122/185 (65%), Gaps = 12/185 (6%)

Query: 14  DTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA 73
           D++  L+ +V+ FID+PKPLIA+VNGPA GIS T L L D+V+A+D            +A
Sbjct: 183 DSADLLETFVSKFIDFPKPLIAVVNGPATGISVTILGLFDLVYATD------------RA 230

Query: 74  TFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEI 133
           TFHTPF+  G +PEGCSS  FPRI G   A+E+L   +KL AQEA   G V+ VF     
Sbjct: 231 TFHTPFSQLGQSPEGCSSYTFPRIMGLGKATEMLLFNKKLTAQEACNLGLVAEVFPDSSF 290

Query: 134 ERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITA 193
           ++++W RI  ++ LP  S+ F+KQL+RV     LH  N +EC+RL+ERW SEE MNAI +
Sbjct: 291 QKEVWERIKDYSTLPKNSLAFSKQLIRVNEKEKLHAVNIQECERLKERWLSEECMNAIIS 350

Query: 194 FFNRK 198
           FF ++
Sbjct: 351 FFQKR 355

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|156356425|ref|XP_001623924.1| predicted protein [Nematostella vectensis] gi|156210667|gb|EDO31824.1| predicted protein [Nematostella vectensis]

 Score =  185 bits (470), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 93/180 (51%), Positives = 121/180 (67%), Gaps = 12/180 (6%)

Query: 19  LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTP 78
           L+K+V+AFIDYPKPL+A +NGPA+GIS T L L D+VFA+D            +ATFHTP
Sbjct: 224 LRKFVSAFIDYPKPLVAAINGPAVGISVTVLGLFDLVFATD------------RATFHTP 271

Query: 79  FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLW 138
           F   G +PEGCSS  FP I G S+A+++L   RKL A EAL+ GF+S VF  ++  R++ 
Sbjct: 272 FMELGQSPEGCSSFTFPAIMGPSLANQVLLASRKLTAAEALKCGFISEVFPHDDFSREVS 331

Query: 139 PRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198
            R+ A AKLPP+S+  +K+L+R      LHE N+REC  LE+RW SEE M AI  F  RK
Sbjct: 332 HRMAAMAKLPPKSLSLSKELIRSANKGKLHEVNERECILLEQRWLSEECMTAIMNFMQRK 391

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|242008850|ref|XP_002425210.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212508931|gb|EEB12472.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 95/199 (47%), Positives = 134/199 (67%), Gaps = 20/199 (10%)

Query: 7   DLINEDTDT-----SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTA 61
           D + E++D+     SI LQK++ AFI++ K L+A+VNGPAIGI+ TTLALCDIV++ DTA
Sbjct: 76  DGLKENSDSAIKNASIRLQKFIEAFINHKKILVALVNGPAIGIAVTTLALCDIVYSIDTA 135

Query: 62  ILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQY 121
                       TF TPFT  GMT EGCSS  FP+I G + A+++L    K+ A+EA Q 
Sbjct: 136 ------------TFQTPFTKLGMTAEGCSSYTFPKILGTAKANDMLLFNYKMTAEEAYQA 183

Query: 122 GFVSGVFTTEEIERDLWPRI--HAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLE 179
           G +S +FT EE++  +W  +  HA A+LP  S+ F+K ++R   L+ L EANK EC+RLE
Sbjct: 184 GLISRLFTKEEMKTRVWKELEKHA-AELPSNSLKFSKDMIRGFDLAKLKEANKMECQRLE 242

Query: 180 ERWESEEFMNAITAFFNRK 198
           ERW+SE+ +NA+  F +R+
Sbjct: 243 ERWKSEDCLNAVVNFMSRR 261

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326917047|ref|XP_003204816.1| PREDICTED: peroxisomal 3,2-trans-enoyl-CoA isomerase-like [Meleagris gallopavo]

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 89/194 (45%), Positives = 125/194 (64%), Gaps = 12/194 (6%)

Query: 5   PTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILL 64
           P+++     D +  L+++V +FID+PKPLIA+VNGPAIGIS T L L D+V+ASD     
Sbjct: 176 PSEMKKAAKDGAELLKEFVGSFIDFPKPLIAVVNGPAIGISVTLLGLFDVVYASD----- 230

Query: 65  NHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFV 124
                  +ATFHTPF+  G +PEGCSS LFP+I G++ A+E+L   +KL A EA   G V
Sbjct: 231 -------KATFHTPFSQLGQSPEGCSSYLFPKIMGSAKANEMLLFNKKLTAAEACALGLV 283

Query: 125 SGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWES 184
           + VF     ++++W R+ A+A LP  S+  +KQL+R      LH  N +EC+ L ERW S
Sbjct: 284 NEVFPDSTFQKEVWARLKAYASLPKNSLAVSKQLLRNMEKEKLHAVNSQECEVLTERWLS 343

Query: 185 EEFMNAITAFFNRK 198
           +E +NA+  FF RK
Sbjct: 344 DECLNALVTFFQRK 357

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|164664454|ref|NP_001106914.1| enoyl-CoA delta isomerase 2, mitochondrial [Sus scrofa] gi|83026364|gb|ABB96225.1| peroxisomal D3,D2-enoyl-CoA isomerase [Sus scrofa]

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 91/195 (46%), Positives = 127/195 (65%), Gaps = 13/195 (6%)

Query: 5   PTDLINEDTDTS-ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAIL 63
           P D + E   +S + L+ +V  FID+PKPLIA+VNGPA+GIS T L L D+V+ASD    
Sbjct: 209 PPDKVEERAQSSAVLLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLFDVVYASD---- 264

Query: 64  LNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGF 123
                   +ATFHTPF+  G +PEGCSS +FP++ G S A+E+L  G+KL A+EAL  G 
Sbjct: 265 --------RATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGL 316

Query: 124 VSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWE 183
           V+ VF  +  ++++W R+ A+AKLPP +M  AK+L+R      LH  N  E + L ERW 
Sbjct: 317 VTAVFPDDTFQKEVWARLKAYAKLPPNAMRIAKRLMRHQEKEKLHAVNAEESRVLAERWV 376

Query: 184 SEEFMNAITAFFNRK 198
           S+E + AI AF ++K
Sbjct: 377 SDECITAIVAFLSKK 391

Source: Sus scrofa

Species: Sus scrofa

Genus: Sus

Family: Suidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395830427|ref|XP_003788331.1| PREDICTED: enoyl-CoA delta isomerase 2, mitochondrial [Otolemur garnettii]

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 87/185 (47%), Positives = 122/185 (65%), Gaps = 12/185 (6%)

Query: 14  DTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA 73
           +++I L+ ++  FID+PKPLIA+VNGPA+GIS TTL LCD V+A+D            +A
Sbjct: 189 NSAILLRDFIDCFIDFPKPLIAVVNGPAVGISVTTLGLCDAVYATD------------RA 236

Query: 74  TFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEI 133
           TFHTPF+  G +PEGCSS  FP+I G S A+E+L  G+KL A+EA   G V+ VF     
Sbjct: 237 TFHTPFSHLGQSPEGCSSYTFPKIMGPSKATEMLIFGKKLTAREACAQGLVTEVFPDSTF 296

Query: 134 ERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITA 193
           ++++W R+ A+AKLPP +M  +K+++R      L   N  EC  L+ERW S+E MNA+  
Sbjct: 297 QKEVWTRLKAYAKLPPNAMRISKEIMRSREKEKLRAINVEECNVLQERWLSDECMNAVMN 356

Query: 194 FFNRK 198
           F +RK
Sbjct: 357 FLSRK 361

Source: Otolemur garnettii

Species: Otolemur garnettii

Genus: Otolemur

Family: Galagidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|47228520|emb|CAG05340.1| unnamed protein product [Tetraodon nigroviridis]

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 86/180 (47%), Positives = 120/180 (66%), Gaps = 12/180 (6%)

Query: 19  LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTP 78
           L+KYV A+ID+PKPL+A+VNGPA+GIS T L L D+V+A+D            +ATFHTP
Sbjct: 140 LRKYVKAYIDFPKPLVAVVNGPAVGISVTVLGLFDLVYATD------------RATFHTP 187

Query: 79  FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLW 138
           FT  G + EGCSS  FP+I GN+ ASE+L   +KL A EA + G V+ VF+    + ++W
Sbjct: 188 FTQLGQSAEGCSSYTFPKIMGNAKASEMLLFNKKLTAAEASRLGLVTEVFSDSSFQSEVW 247

Query: 139 PRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198
            R+ ++AKLPP+ ++F+K L+R      LH  N  E +RL ERW S++ +NAI +FF  K
Sbjct: 248 SRLKSYAKLPPKGLLFSKLLIRSTEKERLHAVNDAEVERLVERWTSDDCVNAIMSFFQNK 307

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449278168|gb|EMC86113.1| Peroxisomal 3,2-trans-enoyl-CoA isomerase, partial [Columba livia]

 Score =  182 bits (463), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 86/194 (44%), Positives = 125/194 (64%), Gaps = 12/194 (6%)

Query: 5   PTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILL 64
           PT++     D ++ L+++V+ FID+PKPLIA+VNGPA+GI  T L LCDIV+ASD     
Sbjct: 195 PTEMKKMAEDGAVLLKEFVSHFIDFPKPLIAVVNGPAVGICVTLLGLCDIVYASD----- 249

Query: 65  NHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFV 124
                  +ATFH PF+  G +PEGCSS LFP+I G + A+E+L   +KL A +A   G V
Sbjct: 250 -------RATFHCPFSQLGQSPEGCSSYLFPKIMGLAKANEVLLFNKKLTAADACVQGLV 302

Query: 125 SGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWES 184
           + VF     ++++W R+ A+A LP  S+  +KQL+R      LH  + +EC+ L+ERW S
Sbjct: 303 TEVFPDRTFQKEVWARLEAYASLPKNSLTLSKQLIRSIEKEKLHAVSSKECEVLKERWLS 362

Query: 185 EEFMNAITAFFNRK 198
           +E +NA+  FF +K
Sbjct: 363 DECINAVVTFFQKK 376

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
UNIPROTKB|F1RWZ4	394	ECI2 "Uncharacterized protein"	0.919	0.461	0.466	6.6e-42
UNIPROTKB|E1BW06	397	ECI2 "Uncharacterized protein"	0.919	0.458	0.453	2.8e-41
UNIPROTKB|F1MWY9	374	ECI2 "Uncharacterized protein"	0.848	0.449	0.472	2.6e-40
RGD|1359427	391	Eci2 "enoyl-CoA delta isomeras	0.863	0.437	0.469	8.7e-40
MGI|MGI:1346064	391	Eci2 "enoyl-Coenzyme A delta i	0.863	0.437	0.464	1.8e-39
UNIPROTKB|F1PML6	393	ECI2 "Uncharacterized protein"	0.919	0.463	0.438	3.7e-39
UNIPROTKB|F1PMM1	370	ECI2 "Uncharacterized protein"	0.919	0.491	0.438	3.7e-39
ZFIN|ZDB-GENE-040718-392	392	zgc:92030 "zgc:92030" [Danio r	0.873	0.441	0.454	4.8e-39
UNIPROTKB|C9J000	227	ECI2 "Enoyl-CoA delta isomeras	0.934	0.814	0.429	1.6e-38
UNIPROTKB|O75521	394	ECI2 "Enoyl-CoA delta isomeras	0.934	0.469	0.429	1.6e-38

UNIPROTKB|F1RWZ4 ECI2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 91/195 (46%), Positives = 127/195 (65%)

Query:     5 PTDLINEDTDTS-ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAIL 63
             P D + E   +S + L+ +V  FID+PKPLIA+VNGPA+GIS T L L D+V+ASD    
Sbjct:   209 PPDKVEERAQSSAVLLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLFDVVYASD---- 264

Query:    64 LNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGF 123
                     +ATFHTPF+  G +PEGCSS +FP++ G S A+E+L  G+KL A+EAL  G 
Sbjct:   265 --------RATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGL 316

Query:   124 VSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWE 183
             V+ VF  +  ++++W R+ A+AKLPP +M  AK+L+R      LH  N  E + L ERW 
Sbjct:   317 VTAVFPDDTFQKEVWARLKAYAKLPPNAMRIAKRLMRHQEKEKLHAVNAEESRVLAERWV 376

Query:   184 SEEFMNAITAFFNRK 198
             S+E + AI AF ++K
Sbjct:   377 SDECITAIVAFLSKK 391

GO:0009062 "fatty acid catabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

UNIPROTKB|E1BW06 ECI2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 88/194 (45%), Positives = 125/194 (64%)

Query:     5 PTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILL 64
             P+++     D +  L+++V +FID+PKPLIA+VNGPA+GIS T L L D+V+ASD     
Sbjct:   213 PSEMKKMAKDAAELLKEFVGSFIDFPKPLIAVVNGPAVGISVTLLGLFDVVYASD----- 267

Query:    65 NHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFV 124
                    +ATFHTPF+  G +PEGCSS LFP+I G++ A+E+L   +KL A EA   G V
Sbjct:   268 -------RATFHTPFSQLGQSPEGCSSYLFPKIMGSAKANEILLFNKKLTAAEACALGLV 320

Query:   125 SGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWES 184
             + VF     ++++W R+ A+A LP  S+  +KQL+R      LH  N +EC+ L ERW S
Sbjct:   321 NEVFPDSTFQKEVWARLKAYASLPKNSLAVSKQLLRNIEKEKLHAVNSQECEVLTERWLS 380

Query:   185 EEFMNAITAFFNRK 198
             +E +NA+  FF RK
Sbjct:   381 DECLNALVTFFQRK 394

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0009062 "fatty acid catabolic process" evidence=IEA

UNIPROTKB|F1MWY9 ECI2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 85/180 (47%), Positives = 119/180 (66%)

Query:    19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTP 78
             L+ +V  FID+PKPL+A+VNGPA+GIS T L L D+V+A+D            +A+FHTP
Sbjct:   204 LRDFVNCFIDFPKPLVAVVNGPAVGISVTILGLFDVVYATD------------RASFHTP 251

Query:    79 FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLW 138
             F+  G +PEGCSS  FP+I G+S A+E+L  G+KL AQEA   G V+ VF     ++++W
Sbjct:   252 FSHLGQSPEGCSSYTFPKIMGSSKAAEMLLFGKKLTAQEACAQGLVTEVFPDGTFQKEVW 311

Query:   139 PRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198
              R+ A++KLPP +M  +KQ++R      LH  N  E   L ERW+S+E MNAI +F +RK
Sbjct:   312 ARLKAYSKLPPNAMRISKQIIRNREKEKLHAVNAEESSVLRERWQSDECMNAIASFLSRK 371

GO:0009062 "fatty acid catabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

RGD|1359427 Eci2 "enoyl-CoA delta isomerase 2" [Rattus norvegicus (taxid:10116)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 86/183 (46%), Positives = 117/183 (63%)

Query:    16 SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATF 75
             +I L+++V  FID+PKPL+A+VNGPA+GIS T L L D V+ASD            +ATF
Sbjct:   218 AIVLREFVNTFIDFPKPLVAVVNGPAVGISVTLLGLFDAVYASD------------RATF 265

Query:    76 HTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIER 135
             HTPF+  G +PE CSS  FP++ G++ A+E+L  G+KL A+EA   G V+ VF     E 
Sbjct:   266 HTPFSHLGQSPEACSSYTFPKMMGSAKAAEMLLFGKKLTAREAWAQGLVTEVFPESTFET 325

Query:   136 DLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFF 195
             ++W R+  +AKLPP SM  +K+L+R      LH  N+ EC  L  RW SEE +NAI +F 
Sbjct:   326 EVWTRLKTYAKLPPNSMRISKELIRKNEKEKLHAVNEEECTTLRARWLSEECINAIMSFV 385

Query:   196 NRK 198
              RK
Sbjct:   386 TRK 388

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=IEA;ISO

GO:0005102 "receptor binding" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005777 "peroxisome" evidence=ISO;IDA

GO:0005782 "peroxisomal matrix" evidence=IEA;ISO

GO:0006635 "fatty acid beta-oxidation" evidence=IDA

GO:0009062 "fatty acid catabolic process" evidence=ISO

GO:0016863 "intramolecular oxidoreductase activity, transposing C=C bonds" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

MGI|MGI:1346064 Eci2 "enoyl-Coenzyme A delta isomerase 2" [Mus musculus (taxid:10090)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 85/183 (46%), Positives = 118/183 (64%)

Query:    16 SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATF 75
             ++ L+ +V +FID+PKPL+A+VNGPA+GIS T L L D VFASD            +ATF
Sbjct:   218 AVLLRDFVNSFIDFPKPLVAVVNGPAVGISVTLLGLFDAVFASD------------RATF 265

Query:    76 HTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIER 135
             HTPF+  G +PE CSS  FP++ G++ A+E+L  G+KL A+EA   G V+ VF     E 
Sbjct:   266 HTPFSQLGQSPEACSSYTFPKMMGSAKAAEMLLFGKKLTAREAWAQGLVTEVFPESTFET 325

Query:   136 DLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFF 195
             ++W R+  +AKLPP +M  +K+L+R      L+  N  EC  L+ RW SEE MNAI +F 
Sbjct:   326 EVWTRLKTYAKLPPNAMRISKELIRKNEKEKLYAVNAEECTTLQARWLSEECMNAIMSFV 385

Query:   196 NRK 198
             +RK
Sbjct:   386 SRK 388

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=ISO;ISS

GO:0005102 "receptor binding" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005777 "peroxisome" evidence=ISO;IDA

GO:0005782 "peroxisomal matrix" evidence=ISO;ISS

GO:0006635 "fatty acid beta-oxidation" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0009062 "fatty acid catabolic process" evidence=ISO;ISS

GO:0016853 "isomerase activity" evidence=IEA

GO:0016863 "intramolecular oxidoreductase activity, transposing C=C bonds" evidence=ISO

UNIPROTKB|F1PML6 ECI2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 85/194 (43%), Positives = 123/194 (63%)

Query:     5 PTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILL 64
             P ++  E  + +I L+ +V  FID+PKPL+A++NGPAIGIS T L L D+V+ASD     
Sbjct:   209 PGEMEKEAKNGAILLRDFVGCFIDFPKPLVAVINGPAIGISVTILGLFDLVYASD----- 263

Query:    65 NHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFV 124
                    +ATFHTPFT  G +PEGCSS  FP+I G + A+E+L  G+KL A+EA   G V
Sbjct:   264 -------RATFHTPFTHLGQSPEGCSSYTFPKIMGQAKAAEMLMFGKKLTAREACAQGLV 316

Query:   125 SGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWES 184
             + VF     ++++W R+ A++KLP  ++  +KQ +R      LH  N  E   L+ERW S
Sbjct:   317 TEVFPDSTFQKEVWTRLKAYSKLPRNTLHISKQSIRNLEKEKLHAVNAEENSVLQERWLS 376

Query:   185 EEFMNAITAFFNRK 198
             +E +NA+ +F +RK
Sbjct:   377 DECINAVMSFLSRK 390

GO:0003824 "catalytic activity" evidence=IEA

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

UNIPROTKB|F1PMM1 ECI2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 85/194 (43%), Positives = 123/194 (63%)

Query:     5 PTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILL 64
             P ++  E  + +I L+ +V  FID+PKPL+A++NGPAIGIS T L L D+V+ASD     
Sbjct:   186 PGEMEKEAKNGAILLRDFVGCFIDFPKPLVAVINGPAIGISVTILGLFDLVYASD----- 240

Query:    65 NHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFV 124
                    +ATFHTPFT  G +PEGCSS  FP+I G + A+E+L  G+KL A+EA   G V
Sbjct:   241 -------RATFHTPFTHLGQSPEGCSSYTFPKIMGQAKAAEMLMFGKKLTAREACAQGLV 293

Query:   125 SGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWES 184
             + VF     ++++W R+ A++KLP  ++  +KQ +R      LH  N  E   L+ERW S
Sbjct:   294 TEVFPDSTFQKEVWTRLKAYSKLPRNTLHISKQSIRNLEKEKLHAVNAEENSVLQERWLS 353

Query:   185 EEFMNAITAFFNRK 198
             +E +NA+ +F +RK
Sbjct:   354 DECINAVMSFLSRK 367

GO:0003824 "catalytic activity" evidence=IEA

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

ZFIN|ZDB-GENE-040718-392 zgc:92030 "zgc:92030" [Danio rerio (taxid:7955)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 84/185 (45%), Positives = 118/185 (63%)

Query:    14 DTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA 73
             D    L++YV A+ID+PKPLI ++NGPA+G+S T L L D+V+A++            +A
Sbjct:   217 DAGELLRRYVKAYIDFPKPLIGVINGPAVGVSVTLLGLFDVVYATE------------KA 264

Query:    74 TFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEI 133
             TFHTPF+  G +PEGCSS LFP++ G + ASE+L   +KL+A +A + G VS VF     
Sbjct:   265 TFHTPFSQLGQSPEGCSSYLFPKMMGAAKASEVLLFNKKLSATQACELGLVSEVFPESSF 324

Query:   134 ERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITA 193
             + ++W R+ A+AKLP  S+  +KQL+R      LH  N  E +RL ERW S+E M AI +
Sbjct:   325 QSEVWSRLKAYAKLPKNSLALSKQLIRGLEKEKLHAVNDAEVERLTERWLSDECMQAIMS 384

Query:   194 FFNRK 198
             FF  K
Sbjct:   385 FFQGK 389

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

UNIPROTKB|C9J000 ECI2 "Enoyl-CoA delta isomerase 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 85/198 (42%), Positives = 122/198 (61%)

Query:     2 TNNPTDLINEDT-DTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDT 60
             T+ P   + E   + ++ L+++V  FID+PKPLIA+VNGPA+GIS T L L D V+ASD 
Sbjct:    39 TDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASD- 97

Query:    61 AILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQ 120
                        +ATFHTPF+  G +PEGCSS  FP+I   + A+E+L  G+KL A EA  
Sbjct:    98 -----------RATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACA 146

Query:   121 YGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEE 180
              G V+ VF     ++++W R+ A+AKLPP ++  +K+++R      LH  N  EC  L+ 
Sbjct:   147 QGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALRISKEVIRKREREKLHAVNAEECNVLQG 206

Query:   181 RWESEEFMNAITAFFNRK 198
             RW S+E  NA+  F +RK
Sbjct:   207 RWLSDECTNAVVNFLSRK 224

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|O75521 ECI2 "Enoyl-CoA delta isomerase 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 85/198 (42%), Positives = 122/198 (61%)

Query:     2 TNNPTDLINEDT-DTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDT 60
             T+ P   + E   + ++ L+++V  FID+PKPLIA+VNGPA+GIS T L L D V+ASD 
Sbjct:   206 TDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASD- 264

Query:    61 AILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQ 120
                        +ATFHTPF+  G +PEGCSS  FP+I   + A+E+L  G+KL A EA  
Sbjct:   265 -----------RATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACA 313

Query:   121 YGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEE 180
              G V+ VF     ++++W R+ A+AKLPP ++  +K+++R      LH  N  EC  L+ 
Sbjct:   314 QGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALRISKEVIRKREREKLHAVNAEECNVLQG 373

Query:   181 RWESEEFMNAITAFFNRK 198
             RW S+E  NA+  F +RK
Sbjct:   374 RWLSDECTNAVVNFLSRK 391

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=IEA;IDA

GO:0005782 "peroxisomal matrix" evidence=IEA;IDA

GO:0009062 "fatty acid catabolic process" evidence=IDA

GO:0005102 "receptor binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	198
COG1024	257	COG1024, CaiD, Enoyl-CoA hydratase/carnithine race	5e-34
PRK06688	259	PRK06688, PRK06688, enoyl-CoA hydratase; Provision	1e-30
cd06558	195	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme	7e-30
pfam00378	245	pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami	3e-25
PRK06210	272	PRK06210, PRK06210, enoyl-CoA hydratase; Provision	1e-23
PRK08260	296	PRK08260, PRK08260, enoyl-CoA hydratase; Provision	2e-21
PRK06023	251	PRK06023, PRK06023, enoyl-CoA hydratase; Provision	3e-21
PRK09245	266	PRK09245, PRK09245, enoyl-CoA hydratase; Provision	4e-21
PRK05981	266	PRK05981, PRK05981, enoyl-CoA hydratase; Provision	4e-15
PRK07468	262	PRK07468, PRK07468, enoyl-CoA hydratase; Provision	2e-14
PRK03580	261	PRK03580, PRK03580, carnitinyl-CoA dehydratase; Pr	3e-14
PRK08258	277	PRK08258, PRK08258, enoyl-CoA hydratase; Provision	5e-13
PRK07659	260	PRK07659, PRK07659, enoyl-CoA hydratase; Provision	1e-12
PRK08290	288	PRK08290, PRK08290, enoyl-CoA hydratase; Provision	3e-12
PRK05809	260	PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydrata	5e-12
PRK07657	260	PRK07657, PRK07657, enoyl-CoA hydratase; Provision	1e-11
PRK11423	261	PRK11423, PRK11423, methylmalonyl-CoA decarboxylas	1e-11
TIGR02280	256	TIGR02280, PaaB1, phenylacetate degradation probab	2e-11
PRK07658	257	PRK07658, PRK07658, enoyl-CoA hydratase; Provision	8e-11
PRK09674	255	PRK09674, PRK09674, enoyl-CoA hydratase-isomerase;	1e-10
PRK07799	263	PRK07799, PRK07799, enoyl-CoA hydratase; Provision	2e-10
PRK06494	259	PRK06494, PRK06494, enoyl-CoA hydratase; Provision	2e-10
PLN02600	251	PLN02600, PLN02600, enoyl-CoA hydratase	2e-09
PRK07511	260	PRK07511, PRK07511, enoyl-CoA hydratase; Provision	3e-09
PRK05980	260	PRK05980, PRK05980, enoyl-CoA hydratase; Provision	3e-09
PRK06190	258	PRK06190, PRK06190, enoyl-CoA hydratase; Provision	3e-09
PRK07260	255	PRK07260, PRK07260, enoyl-CoA hydratase; Provision	4e-09
PRK06142	272	PRK06142, PRK06142, enoyl-CoA hydratase; Provision	5e-09
PRK05995	262	PRK05995, PRK05995, enoyl-CoA hydratase; Provision	6e-09
TIGR01929	259	TIGR01929, menB, naphthoate synthase (dihydroxynap	6e-09
TIGR03210	256	TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hyd	7e-09
PRK06127	269	PRK06127, PRK06127, enoyl-CoA hydratase; Provision	7e-09
PRK05864	276	PRK05864, PRK05864, enoyl-CoA hydratase; Provision	9e-09
COG0447	282	COG0447, MenB, Dihydroxynaphthoic acid synthase [C	1e-08
PRK08140	262	PRK08140, PRK08140, enoyl-CoA hydratase; Provision	2e-08
PRK08138	261	PRK08138, PRK08138, enoyl-CoA hydratase; Provision	4e-08
PRK05870	249	PRK05870, PRK05870, enoyl-CoA hydratase; Provision	5e-08
PRK05862	257	PRK05862, PRK05862, enoyl-CoA hydratase; Provision	5e-08
PRK07396	273	PRK07396, PRK07396, dihydroxynaphthoic acid synthe	1e-07
PRK08252	254	PRK08252, PRK08252, enoyl-CoA hydratase; Provision	1e-07
TIGR03189	251	TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecar	1e-07
PRK06495	257	PRK06495, PRK06495, enoyl-CoA hydratase; Provision	1e-07
PLN02664	275	PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-d	2e-07
PLN02921	327	PLN02921, PLN02921, naphthoate synthase	2e-07
PRK07827	260	PRK07827, PRK07827, enoyl-CoA hydratase; Provision	4e-07
PRK05869	222	PRK05869, PRK05869, enoyl-CoA hydratase; Validated	6e-07
PRK06143	256	PRK06143, PRK06143, enoyl-CoA hydratase; Provision	1e-06
TIGR02437	714	TIGR02437, FadB, fatty oxidation complex, alpha su	1e-06
PRK06563	255	PRK06563, PRK06563, enoyl-CoA hydratase; Provision	2e-06
PRK06144	262	PRK06144, PRK06144, enoyl-CoA hydratase; Provision	7e-06
PRK08259	254	PRK08259, PRK08259, enoyl-CoA hydratase; Provision	2e-05
PRK08321	302	PRK08321, PRK08321, naphthoate synthase; Validated	3e-05
PRK07938	249	PRK07938, PRK07938, enoyl-CoA hydratase; Provision	3e-05
PRK07110	249	PRK07110, PRK07110, polyketide biosynthesis enoyl-	6e-05
PRK07854	243	PRK07854, PRK07854, enoyl-CoA hydratase; Provision	7e-05
PRK07509	262	PRK07509, PRK07509, enoyl-CoA hydratase; Provision	3e-04
PRK08139	266	PRK08139, PRK08139, enoyl-CoA hydratase; Validated	3e-04
PRK09120	275	PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydrata	4e-04
PRK08150	255	PRK08150, PRK08150, enoyl-CoA hydratase; Provision	5e-04
PLN02888	265	PLN02888, PLN02888, enoyl-CoA hydratase	0.001

>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

 Score =  120 bits (304), Expect = 5e-34
 Identities = 59/184 (32%), Positives = 81/184 (44%), Gaps = 18/184 (9%)

Query: 18  TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHT 77
             Q  + A  D PKP+IA VNG A+G        CDI  A++ A             F  
Sbjct: 86  PGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDA------------KFGL 133

Query: 78  PFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDL 137
           P    G+ P    +   PR+ G   A ELL TG  ++A EAL+ G V  V    E   +L
Sbjct: 134 PEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDEVVPDAE---EL 190

Query: 138 WPRIHAWAK---LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAF 194
             R    A+    PP ++   K+LVR  + + L EA + E       + SE+F   + AF
Sbjct: 191 LERALELARRLAAPPLALAATKRLVRAALEADLAEALEAEALAFARLFSSEDFREGVRAF 250

Query: 195 FNRK 198
             RK
Sbjct: 251 LERK 254

Length = 257

>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional

 Score =  112 bits (282), Expect = 1e-30
 Identities = 56/176 (31%), Positives = 86/176 (48%), Gaps = 28/176 (15%)

Query: 30  PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
           PKP++A VNGPA+G+   +LAL CD+V+AS++A             F  PF   G+ P+ 
Sbjct: 96  PKPVVAAVNGPAVGV-GVSLALACDLVYASESA------------KFSLPFAKLGLCPDA 142

Query: 89  CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE-------RDLWPRI 141
             S L PR+ G + A+E+L  G  L+A+EAL+ G V+ V    E++         L    
Sbjct: 143 GGSALLPRLIGRARAAEMLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKL---- 198

Query: 142 HAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNR 197
              A  P  ++ + K+ +    L+ L EA  RE         + +F    TAF  +
Sbjct: 199 ---AAGPASALRYTKRAINAATLTELEEALAREAAGFGRLLRTPDFREGATAFIEK 251

Length = 259

>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

 Score =  108 bits (272), Expect = 7e-30
 Identities = 44/128 (34%), Positives = 61/128 (47%), Gaps = 16/128 (12%)

Query: 19  LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTP 78
           LQ+ + A +  PKP+IA VNG A+G        CDI  A++ A             F  P
Sbjct: 82  LQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDA------------KFGLP 129

Query: 79  FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLW 138
               G+ P G  +   PR+ G + A ELL TGR+++A+EAL+ G V  V   EE    L 
Sbjct: 130 EVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEVVPDEE----LL 185

Query: 139 PRIHAWAK 146
                 A+
Sbjct: 186 AAALELAR 193

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195

>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family

 Score = 97.8 bits (244), Expect = 3e-25
 Identities = 55/186 (29%), Positives = 80/186 (43%), Gaps = 14/186 (7%)

Query: 10  NEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPV 68
            +    S+  Q   +   D PKP+IA VNG A+G     LAL CD   A+D A       
Sbjct: 70  AQQAQFSLEAQDLWSRLEDLPKPVIAAVNGYALG-GGLELALACDYRIAADNAK------ 122

Query: 69  FVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVF 128
                 F  P    G+ P    +   PRI G S A E+L TGR++ AQEAL+ G V  V 
Sbjct: 123 ------FGLPEVKLGIIPGAGGTQRLPRIIGVSAALEMLLTGRRIRAQEALKMGLVDKVV 176

Query: 129 TTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFM 188
             E++  +        A  PP ++   K  +R  +   L E   +  +     + +++  
Sbjct: 177 PEEQLVEEAIELAQRLADKPPLALAALKAAMRAALEDALPEVRAQALRLYPAPFSTDDVK 236

Query: 189 NAITAF 194
             I AF
Sbjct: 237 EGIQAF 242

This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245

>gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional

 Score = 94.4 bits (235), Expect = 1e-23
 Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 23/175 (13%)

Query: 30  PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
            KP+IA +NG   GI  T   +CD+ FA+D A             F T F  RG+  E  
Sbjct: 108 RKPVIAAINGACAGIGLTHALMCDVRFAADGAK------------FTTAFARRGLIAEHG 155

Query: 90  SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK--- 146
            S + PR+ G++ A +LL + R   A+EAL+ G V+ V   +E    L  R  A+A+   
Sbjct: 156 ISWILPRLVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDE----LMERTLAYAEDLA 211

Query: 147 --LPPQSM-IFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198
             + P SM +  +QL        L EA  R  + + E  +  +F+  + +F  ++
Sbjct: 212 RNVSPASMAVIKRQLYEDA-FQTLAEATARANREMHESLQRPDFIEGVASFLEKR 265

Length = 272

>gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional

 Score = 88.5 bits (220), Expect = 2e-21
 Identities = 60/179 (33%), Positives = 87/179 (48%), Gaps = 26/179 (14%)

Query: 28  DYPKPLIAIVNGPAIGISAT-TLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTP 86
           D  KP+IA VNGPA+G+ AT TLA+ DI  AS  A       FV        F  RG+ P
Sbjct: 111 DSLKPVIAAVNGPAVGVGATMTLAM-DIRLASTAARF----GFV--------FGRRGIVP 157

Query: 87  EGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK 146
           E  SS   PR+ G   A E +Y+GR  +AQEAL  G V  V   +    +L P   A A+
Sbjct: 158 EAASSWFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPD----ELLPAARALAR 213

Query: 147 L-----PPQSMIFAKQLVRVPMLSMLH--EANKRECKRLEERWESEEFMNAITAFFNRK 198
                  P S+   +Q++   M    H  EA++ + + +  R  S +    +++F  ++
Sbjct: 214 EIADNTSPVSVALTRQMMW-RMAGADHPMEAHRVDSRAIYSRGRSGDGKEGVSSFLEKR 271

Length = 296

>gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional

 Score = 87.5 bits (217), Expect = 3e-21
 Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 15/177 (8%)

Query: 22  YVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFT 80
           ++ A  +  KP+++ V+G AIGI  TT+ L CD+ FAS             ++ F TPF 
Sbjct: 89  FLIALAEAEKPIVSGVDGLAIGI-GTTIHLHCDLTFASP------------RSLFRTPFV 135

Query: 81  LRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPR 140
              + PE  SS+L PR+ G+  A  LL  G   +A+ A + G +  +   E +E +    
Sbjct: 136 DLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKA 195

Query: 141 IHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNR 197
               A  PPQ++  A+ L+R P   +L   +  E K    R +S E   A  AF  R
Sbjct: 196 AEELAAKPPQALQIARDLMRGPREDILARID-EEAKHFAARLKSAEARAAFEAFMRR 251

Length = 251

>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional

 Score = 87.3 bits (217), Expect = 4e-21
 Identities = 49/145 (33%), Positives = 72/145 (49%), Gaps = 18/145 (12%)

Query: 19  LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTP 78
           +Q+   A  +   P+IA VNGPAIG       +CDI  AS+TA             F   
Sbjct: 92  IQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETA------------RFAES 139

Query: 79  FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEI---ER 135
           F   G+ P    + L PRI G + A+E+ +TG  ++A  AL++G VS V   +++    R
Sbjct: 140 FVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAAR 199

Query: 136 DLWPRIHAWAKLPPQSMIFAKQLVR 160
            L  RI   A  PP ++   K+L+R
Sbjct: 200 ALAERI---AANPPHALRLTKRLLR 221

Length = 266

>gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional

 Score = 71.3 bits (175), Expect = 4e-15
 Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 32/208 (15%)

Query: 3   NNPTDLINEDTDTSITLQKYVAAFI----DYPKPLIAIVNGPAIGISATTLALCDIVFAS 58
            +     +   D    L+     F+    + P P++  VNGPA G+  +   + D++  +
Sbjct: 72  GSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCA 131

Query: 59  DTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEA 118
            +A       + LQA     F   G+ P+G S+ L PR+ G + A EL   G KL A+ A
Sbjct: 132 RSA-------YFLQA-----FRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAETA 179

Query: 119 LQYGFVSGVFTTEEIERDLWPRIHAWAKL----PPQSMIFAKQLV----RVPMLSMLHEA 170
           LQ+G V+ V    E    L       A      P  ++   ++L            L+  
Sbjct: 180 LQWGLVNRVVDDAE----LMAEAMKLAHELANGPTVALGLIRKLYWDSPENDFEEQLNL- 234

Query: 171 NKRECKRLEERWESEEFMNAITAFFNRK 198
            +RE +R+  +  +E+F   + AF  ++
Sbjct: 235 -EREAQRIAGK--TEDFKEGVGAFLQKR 259

Length = 266

>gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional

 Score = 69.3 bits (170), Expect = 2e-14
 Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 15/175 (8%)

Query: 25  AFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLR-G 83
           A  D PKPLI  + G A G     +++CD+  A   A       F L  T       R G
Sbjct: 95  ALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGAR------FGLTET-------RLG 141

Query: 84  MTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHA 143
           + P   S  +  R+ G + A  +  + R  +A+EA++ G +S V   E ++  +   +  
Sbjct: 142 LIPATISPYVVARM-GEANARRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTP 200

Query: 144 WAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198
           +    P ++  AK LVR     +         + L + WE+EE    I AFF+++
Sbjct: 201 YLSCAPGAVAAAKALVRALGAPIDEAVIDATIEALADTWETEEAREGIAAFFDKR 255

Length = 262

>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional

 Score = 68.6 bits (168), Expect = 3e-14
 Identities = 43/172 (25%), Positives = 72/172 (41%), Gaps = 18/172 (10%)

Query: 28  DYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTP 86
           D  KP+IA VNG A G     LAL  D +  +D             A+F  P    G+ P
Sbjct: 92  DLDKPVIAAVNGYAFG-GGFELALAADFIVCAD------------NASFALPEAKLGIVP 138

Query: 87  EGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK 146
           +    +  P+    ++A+E++ TGR+++A+EAL++G V+ V    E+             
Sbjct: 139 DSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLVN 198

Query: 147 LPPQSMIFAKQLVR----VPMLSMLHEANKRECKRLEERWESEEFMNAITAF 194
             P ++   K++ R    +P+            K       SE+ +    AF
Sbjct: 199 SAPLAIAALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAF 250

Length = 261

>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional

 Score = 65.4 bits (160), Expect = 5e-13
 Identities = 44/158 (27%), Positives = 64/158 (40%), Gaps = 43/158 (27%)

Query: 23  VAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFA---SDTAILLNHPVFVLQATFHTPF 79
           V A    P+P+IA V+G   G  A      D+      + TA L               F
Sbjct: 106 VKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFL---------------F 150

Query: 80  TLRGMTPEGC---SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERD 136
           T  G+   G    +  L PRI G   ASELLYTGR ++A+E  ++GF +           
Sbjct: 151 TRVGLA--GADMGACALLPRIIGQGRASELLYTGRSMSAEEGERWGFFN----------- 197

Query: 137 LWPRIHAWAKLPPQSMIFAKQLVRVPML------SMLH 168
              R+    +L  ++   A++L   P        +MLH
Sbjct: 198 ---RLVEPEELLAEAQALARRLAAGPTFAHGMTKTMLH 232

Length = 277

>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional

 Score = 64.3 bits (157), Expect = 1e-12
 Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 28/169 (16%)

Query: 18  TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAIL-LNHPVFVLQATF 75
           T+ + V      PK  I+ ++GPA G+   ++AL  D V A  +A L +N          
Sbjct: 86  TISEIVVTLYTMPKLTISAIHGPAAGL-GLSIALTADYVIADISAKLAMN---------- 134

Query: 76  HTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIER 135
              F   G+ P+G       +  G + A ++++ G+KL+A EAL  G +  V    + + 
Sbjct: 135 ---FIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLIDEVI-GGDFQT 190

Query: 136 DLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKR---LEER 181
               +I  W + P ++MI  KQ+          E N+ + ++   LE+R
Sbjct: 191 AAKQKISEWLQKPLKAMIETKQI--------YCELNRSQLEQVLQLEKR 231

Length = 260

>gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional

 Score = 63.4 bits (155), Expect = 3e-12
 Identities = 47/140 (33%), Positives = 60/140 (42%), Gaps = 30/140 (21%)

Query: 28  DYPKPLIAIVNGPAIGISATTLAL---CDIVFASDTAILLNHPVFVLQATFHTPFTLRGM 84
           D PKP IA V G  I   A  L L   CD++ ASD             A F  P    G+
Sbjct: 116 DLPKPTIAQVQGACI---AGGLMLAWVCDLIVASD------------DAFFSDPVVRMGI 160

Query: 85  TPEGCSSVLF--PRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE---RDLWP 139
                    F  P   G   A ELL+TG +L A EA + G V+ V   +E+E    +L  
Sbjct: 161 ----PGVEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELAR 216

Query: 140 RIHAWAKLPPQSMIFAKQLV 159
           RI   A +PP  +   K+ V
Sbjct: 217 RI---AAMPPFGLRLTKRAV 233

Length = 288

>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated

 Score = 62.5 bits (152), Expect = 5e-12
 Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 12/168 (7%)

Query: 31  KPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCS 90
           KP+IA +NG A+G        CDI  AS+ A             F  P    G+TP    
Sbjct: 98  KPVIAAINGFALGGGCELSMACDIRIASEKA------------KFGQPEVGLGITPGFGG 145

Query: 91  SVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQ 150
           +    RI G   A EL+YTG  +NA+EAL+ G V+ V   E++  +     +  A   P 
Sbjct: 146 TQRLARIVGPGKAKELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANAPI 205

Query: 151 SMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198
           ++   K  +   M   +  A   E +   E + +E+    +TAF  ++
Sbjct: 206 AVKLCKDAINRGMQVDIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKR 253

Length = 260

>gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional

 Score = 61.3 bits (149), Expect = 1e-11
 Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 14/106 (13%)

Query: 30  PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
           P+P+IA +NG A+G     LAL CD   A+++A L                T   + P  
Sbjct: 97  PQPVIAAINGIALG-GGLELALACDFRIAAESASL------------GLTETTLAIIPGA 143

Query: 89  CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE 134
             +   PR+ G   A EL+YTGR+++AQEA + G V  V     +E
Sbjct: 144 GGTQRLPRLIGVGRAKELIYTGRRISAQEAKEIGLVEFVVPAHLLE 189

Length = 260

>gnl|CDD|236908 PRK11423, PRK11423, methylmalonyl-CoA decarboxylase; Provisional

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 26/178 (14%)

Query: 29  YPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPE 87
           +PKP+IA+V G   G  A  L + CD++ A+ T+     P     A    P+ L G+   
Sbjct: 95  FPKPVIAMVEGSVWG-GAFELIMSCDLIIAASTSTFAMTP-----ANLGVPYNLSGI--- 145

Query: 88  GCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE---RDLWPRIHAW 144
               + F    G  +  E+ +T   + AQ AL  G ++ V   EE+E     +   I   
Sbjct: 146 ----LNFTNDAGFHIVKEMFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHI--- 198

Query: 145 AKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEER----WESEEFMNAITAFFNRK 198
           ++  P ++   K+ +RV  L   H  N  E +R++      ++SE++   + AF  ++
Sbjct: 199 SEKAPLAIAVIKEQLRV--LGEAHPMNPDEFERIQGLRRAVYDSEDYQEGMNAFLEKR 254

Length = 261

>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA hydratase paaB

 Score = 60.6 bits (147), Expect = 2e-11
 Identities = 40/169 (23%), Positives = 68/169 (40%), Gaps = 12/169 (7%)

Query: 30  PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
           P P++  VNG A G  A     CDIV A+++            A F   F   G+ P+  
Sbjct: 93  PLPVVCAVNGVAAGAGANLALACDIVLAAES------------ARFIQAFAKIGLIPDSG 140

Query: 90  SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP 149
            +   PR+ G + A  L   G KL+A+ A  +G +  V     +  +        A  P 
Sbjct: 141 GTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQPT 200

Query: 150 QSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198
           + +   K+ ++    + L      E     E   S ++   +TAF +++
Sbjct: 201 RGLALTKRAIQAAATNSLDTQLDLERDLQRELGRSADYAEGVTAFLDKR 249

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). Length = 256

>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional

 Score = 59.3 bits (144), Expect = 8e-11
 Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 14/167 (8%)

Query: 29  YPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPE 87
           + KP+IA ++G A+G     LA+ C I FA+++A  L  P   L           G+ P 
Sbjct: 93  FSKPVIAAIHGAALG-GGLELAMSCHIRFATESA-KLGLPELNL-----------GLIPG 139

Query: 88  GCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL 147
              +   PR  G + A E++ T   +   EAL++G V+GVF  E +  D        A  
Sbjct: 140 FAGTQRLPRYVGKAKALEMMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGK 199

Query: 148 PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAF 194
            P +     +L++    S  +E  KRE K   E + SE+    + AF
Sbjct: 200 SPATTRAVLELLQTTKSSSYYEGVKREAKIFGEVFTSEDAKEGVQAF 246

Length = 257

>gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional

 Score = 58.2 bits (141), Expect = 1e-10
 Identities = 47/132 (35%), Positives = 60/132 (45%), Gaps = 16/132 (12%)

Query: 7   DLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNH 66
           DL     D    L + + AF    KPLIA VNG A+G       LCDIV A +       
Sbjct: 72  DLAATLNDPRPQLWQRLQAF---NKPLIAAVNGYALGAGCELALLCDIVIAGEN------ 122

Query: 67  PVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSG 126
                 A F  P    G+ P    +    R  G S+AS+++ TG  + AQ+A Q G VS 
Sbjct: 123 ------ARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSE 176

Query: 127 VFTTE-EIERDL 137
           VF  E  +ER L
Sbjct: 177 VFPPELTLERAL 188

Length = 255

>gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 33/97 (34%), Positives = 42/97 (43%), Gaps = 12/97 (12%)

Query: 31  KPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCS 90
           KPLIA V GPAI      L   DI  A ++A             F        + P G S
Sbjct: 101 KPLIAAVEGPAIAGGTEILQGTDIRVAGESA------------KFGISEAKWSLFPMGGS 148

Query: 91  SVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGV 127
           +V   R    +VA +LL TGR + A EA + G +  V
Sbjct: 149 AVRLVRQIPYTVACDLLLTGRHITAAEAKEIGLIGHV 185

Length = 263

>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 52/174 (29%), Positives = 77/174 (44%), Gaps = 24/174 (13%)

Query: 28  DYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTP 86
           D  KP+IA VNG A+G     LAL CD++ A++ A            TF  P    G+  
Sbjct: 92  DLDKPIIAAVNGVAMG-GGFELALACDLIVAAENA------------TFALPEPRVGLAA 138

Query: 87  EGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWA- 145
                   PR  G   A  ++ TGR++ A+E L+ GFV+ V    E+          WA 
Sbjct: 139 LAGGLHRLPRQIGLKRAMGMILTGRRVTAREGLELGFVNEVVPAGELLA----AAERWAD 194

Query: 146 ---KLPPQSMIFAKQLVRVPMLSMLHEA--NKRECKRLEERWESEEFMNAITAF 194
                 P S+  +KQ V   +   L EA   +R+   +E R  S++++    AF
Sbjct: 195 DILACSPLSIRASKQAVYRGLEVSLEEAITAQRDYPAVEARRASQDYIEGPKAF 248

Length = 259

>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase

 Score = 55.2 bits (133), Expect = 2e-09
 Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 14/108 (12%)

Query: 18  TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFH 76
           +L+   ++      P IA+V G A+G     LAL CD+    +            +A F 
Sbjct: 76  SLRSTFSSLEALSIPTIAVVEGAALG-GGLELALSCDLRICGE------------EAVFG 122

Query: 77  TPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFV 124
            P T   + P    +   PR+ G S A EL++TGR++ A+EA   G V
Sbjct: 123 LPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLV 170

Length = 251

>gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 44/185 (23%), Positives = 76/185 (41%), Gaps = 22/185 (11%)

Query: 19  LQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHT 77
           L  ++ A   +PKP+IA V G A G +  +LAL CD++ A+  A       FV+      
Sbjct: 87  LHDWIRAIRAFPKPVIAAVEGAAAG-AGFSLALACDLLVAARDA------KFVMA----- 134

Query: 78  PFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDL 137
            +   G+TP+G  S    R     +A+ELL  G+ ++A+     G V+ +    +   + 
Sbjct: 135 -YVKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAERLHALGVVNRLAEPGQALAE- 192

Query: 138 WPRIHAWA----KLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITA 193
                A A       P ++   K L+     + L    + E           + +  I A
Sbjct: 193 ---ALALADQLAAGSPNALARIKSLIADAPEATLAAQLEAERDHFVASLHHADALEGIAA 249

Query: 194 FFNRK 198
           F  ++
Sbjct: 250 FLEKR 254

Length = 260

>gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional

 Score = 54.8 bits (132), Expect = 3e-09
 Identities = 41/125 (32%), Positives = 53/125 (42%), Gaps = 15/125 (12%)

Query: 20  QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPF 79
           Q   A    +PKP+IA VNG A G          +  AS+            +A F  P 
Sbjct: 90  QAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASE------------RALFAKPE 137

Query: 80  TLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEI---ERD 136
              GM P    +   PR+ G   A ELL TG   +A+ AL+ G V+ V   EE+    R 
Sbjct: 138 IRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLVNAVVPHEELLPAARA 197

Query: 137 LWPRI 141
           L  RI
Sbjct: 198 LARRI 202

Length = 260

>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 44/146 (30%), Positives = 61/146 (41%), Gaps = 28/146 (19%)

Query: 23  VAAFIDYPKPLIAIVNGPAI--GISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPF 79
             A+    KP+I  +NG A+  G+    LAL CDI+ AS+ A       F   A  H   
Sbjct: 87  SPAWPAMRKPVIGAINGAAVTGGLE---LALACDILIASERA------RF---ADTHA-- 132

Query: 80  TLR-GMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLW 138
             R G+ P    SV  P+  G   A  +  TG  L+A +AL+ G V+ V   +E    L 
Sbjct: 133 --RVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGLVTEVVPHDE----LL 186

Query: 139 PRIHAWAK----LPPQSMIFAKQLVR 160
           PR    A       P ++   K    
Sbjct: 187 PRARRLAASIAGNNPAAVRALKASYD 212

Length = 258

>gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional

 Score = 54.4 bits (131), Expect = 4e-09
 Identities = 45/169 (26%), Positives = 66/169 (39%), Gaps = 12/169 (7%)

Query: 30  PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
           PKP+I  V+G   G +A      D   AS             +  F   F   G+ P+  
Sbjct: 98  PKPVIMCVDGAVAGAAANMAVAADFCIAST------------KTKFIQAFVGVGLAPDAG 145

Query: 90  SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP 149
              L  R  G + A+ L  TG  L A++AL+YGFV  V  +E++E+     +    +   
Sbjct: 146 GLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGSS 205

Query: 150 QSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198
            S    K LV         +  K E    E     E+F   + AF  R+
Sbjct: 206 NSYAAIKSLVWESFFKGWEDYAKLELALQESLAFKEDFKEGVRAFSERR 254

Length = 255

>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional

 Score = 53.8 bits (130), Expect = 5e-09
 Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 20/118 (16%)

Query: 19  LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTP 78
           LQ  + A  D  KP+IA V G  IG     ++ CD+ +AS  A                 
Sbjct: 98  LQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAK---------------- 141

Query: 79  FTLR----GMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 132
           F++R    GM  +  S    PRI G+    EL  TGR ++A EA + G V+ V+   +
Sbjct: 142 FSVREVDLGMVADVGSLQRLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDAD 199

Length = 272

>gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional

 Score = 53.8 bits (130), Expect = 6e-09
 Identities = 38/131 (29%), Positives = 54/131 (41%), Gaps = 13/131 (9%)

Query: 30  PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
           PKP+IA V+G A       +A CDI  A+D A             F       G+ P   
Sbjct: 99  PKPVIARVHGDAYAGGMGLVAACDIAVAADHA------------VFCLSEVRLGLIPATI 146

Query: 90  SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP 149
           S  +  R  G   A     T  + +A EAL+ G V  V   E ++  +   + A     P
Sbjct: 147 SPYVI-RAMGERAARRYFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVANSP 205

Query: 150 QSMIFAKQLVR 160
           Q++   K+LVR
Sbjct: 206 QAVRAGKRLVR 216

Length = 262

>gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid synthetase)

 Score = 53.7 bits (129), Expect = 6e-09
 Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 12/106 (11%)

Query: 30  PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
           PKP+IA+VNG AIG       +CD+  A++ A        V            G    G 
Sbjct: 97  PKPVIAMVNGYAIGGGHVLHMMCDLTIAAENARFGQTGPKV------------GSFDGGY 144

Query: 90  SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIER 135
            S    RI G   A E+ +  R+ +A++AL  G V+ V    ++E+
Sbjct: 145 GSSYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEK 190

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 259

>gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase

 Score = 53.8 bits (129), Expect = 7e-09
 Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 12/113 (10%)

Query: 25  AFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGM 84
           A  D PKP+IA V G AIG     + +CD+  AS+ A        V            G 
Sbjct: 89  AIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKV------------GS 136

Query: 85  TPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDL 137
              G  + L  R+ G   A E+ Y  R+  AQEAL  G V+ V   ++++ ++
Sbjct: 137 VDPGYGTALLARVVGEKKAREIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEV 189

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. Length = 256

>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional

 Score = 53.6 bits (129), Expect = 7e-09
 Identities = 46/172 (26%), Positives = 69/172 (40%), Gaps = 14/172 (8%)

Query: 24  AAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRG 83
           AA  DY KP IA + G  IG        CDI  A+              + F  P    G
Sbjct: 100 AALADYAKPTIACIRGYCIGGGMGIALACDIRIAA------------EDSRFGIPAARLG 147

Query: 84  MTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHA 143
           +            + G S A +L YT R+ +A EAL+ G V  V   +++E  L      
Sbjct: 148 LGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAEALRIGLVHRVTAADDLETALADYAAT 207

Query: 144 WAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEER-WESEEFMNAITAF 194
            A   P ++  AK+ +   +L    E +   C+ L    ++SE++     AF
Sbjct: 208 IAGNAPLTLRAAKRAIA-ELLKDEPERDMAACQALVAACFDSEDYREGRAAF 258

Length = 269

>gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional

 Score = 53.3 bits (128), Expect = 9e-09
 Identities = 39/97 (40%), Positives = 50/97 (51%), Gaps = 15/97 (15%)

Query: 31  KPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMT-PEG 88
           +P+IA VNGPAIG     LAL  DI  AS +A             F       G+T  E 
Sbjct: 110 QPVIAAVNGPAIG-GGLCLALAADIRVASSSAY------------FRAAGINNGLTASEL 156

Query: 89  CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVS 125
             S L PR  G+S A E++ TGR ++A+EA + G VS
Sbjct: 157 GLSYLLPRAIGSSRAFEIMLTGRDVDAEEAERIGLVS 193

Length = 276

>gnl|CDD|223524 COG0447, MenB, Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 12/107 (11%)

Query: 30  PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
           PKP+IA+V G AIG       +CD+  A+D AI            F       G    G 
Sbjct: 116 PKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAI------------FGQTGPKVGSFDGGY 163

Query: 90  SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERD 136
            S    RI G   A E+ +  R+ +A+EAL  G V+ V    ++E++
Sbjct: 164 GSSYLARIVGQKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKE 210

Length = 282

>gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional

 Score = 52.6 bits (127), Expect = 2e-08
 Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 14/96 (14%)

Query: 30  PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
           P P+IA VNG A G  A  LAL CDIV A+ +A       F+ QA     F   G+ P+ 
Sbjct: 99  PLPVIAAVNGVAAGAGA-NLALACDIVLAARSA------SFI-QA-----FVKIGLVPDS 145

Query: 89  CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFV 124
             +   PR+ G + A  L   G KL+A++A Q+G +
Sbjct: 146 GGTWFLPRLVGMARALGLALLGEKLSAEQAEQWGLI 181

Length = 262

>gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional

 Score = 51.6 bits (124), Expect = 4e-08
 Identities = 42/141 (29%), Positives = 60/141 (42%), Gaps = 23/141 (16%)

Query: 30  PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTP-EG 88
           PKP+IA VNG A+G         DI+ A ++A            +F  P    G+ P  G
Sbjct: 98  PKPVIAAVNGYALGGGCELAMHADIIVAGESA------------SFGQPEIKVGLMPGAG 145

Query: 89  CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE-IER--DLWPRIHAWA 145
            +  L  R  G   A  +  TG  + A EAL  G VS V   E+ + R  +L   I   A
Sbjct: 146 GTQRLV-RAVGKFKAMRMALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREI---A 201

Query: 146 KLPPQSMIFAKQLVRVPMLSM 166
           ++PP   +   Q+  V +   
Sbjct: 202 RMPP---LALAQIKEVVLAGA 219

Length = 261

>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional

 Score = 51.3 bits (123), Expect = 5e-08
 Identities = 36/147 (24%), Positives = 59/147 (40%), Gaps = 19/147 (12%)

Query: 18  TLQKYVAAFIDY---PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQA 73
            L++    F+     P P IA VNG A+G +   LAL  D+  A              +A
Sbjct: 80  GLRRIYDGFLAVASCPLPTIAAVNGAAVG-AGLNLALAADVRIAGP------------KA 126

Query: 74  TFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEI 133
            F   F   G+ P G ++ +  R  G  VA   L  G + +A+ A+++G    V   ++ 
Sbjct: 127 LFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLALMV--ADDP 184

Query: 134 ERDLWPRIHAWAKLPPQSMIFAKQLVR 160
                      A  P + ++  K  +R
Sbjct: 185 VAAALELAAGPAAAPRELVLATKASMR 211

Length = 249

>gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional

 Score = 51.2 bits (123), Expect = 5e-08
 Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 12/103 (11%)

Query: 31  KPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCS 90
           KP+IA V G A+G       +CDI+ A+DTA             F  P    G+ P    
Sbjct: 95  KPVIAAVAGYALGGGCELAMMCDIIIAADTA------------KFGQPEIKLGVLPGMGG 142

Query: 91  SVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEI 133
           S    R  G + A +L  TGR ++A EA + G VS V   +++
Sbjct: 143 SQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRVVPADKL 185

Length = 257

>gnl|CDD|180958 PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 35/113 (30%), Positives = 50/113 (44%), Gaps = 26/113 (23%)

Query: 30  PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMT-PE- 87
           PKP+IA+V G AIG       +CD+  A+D AI                    G T P+ 
Sbjct: 107 PKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIF-------------------GQTGPKV 147

Query: 88  -----GCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIER 135
                G  +    RI G   A E+ +  R+ +AQEAL  G V+ V    ++E+
Sbjct: 148 GSFDGGYGASYLARIVGQKKAREIWFLCRQYDAQEALDMGLVNTVVPLADLEK 200

Length = 273

>gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 47/170 (27%), Positives = 70/170 (41%), Gaps = 24/170 (14%)

Query: 31  KPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
           KPLIA V G A+      LAL CD++ A+  A             F  P   RG+   G 
Sbjct: 92  KPLIAAVEGYALA-GGFELALACDLIVAARDA------------KFGLPEVKRGLVAAGG 138

Query: 90  SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE-----EIERDLWPRIHAW 144
             +  PR     +A EL  TG  L A+ A + G V+ +  TE     +   +L  RI A 
Sbjct: 139 GLLRLPRRIPYHIAMELALTGDMLTAERAHELGLVNRL--TEPGQALDAALELAERIAAN 196

Query: 145 AKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAF 194
               P ++  +K++V         E   R+ + +   + S +     TAF
Sbjct: 197 G---PLAVAASKRIVVESGDWSEDEMFARQRELIAPVFTSADAKEGATAF 243

Length = 254

>gnl|CDD|132233 TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecarbonyl-CoA hydratase

 Score = 49.9 bits (119), Expect = 1e-07
 Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 15/182 (8%)

Query: 18  TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHT 77
           +L K V A +D P P++  V G  +G      A  +++FA+  A  L  P  VL      
Sbjct: 77  SLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDA-KLGQPEIVL------ 129

Query: 78  PFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDL 137
                G+     S +L  R+ G   A +LLY+GR ++  E  + G  + V    E     
Sbjct: 130 -----GVFAPAASCLLPERM-GRVAAEDLLYSGRSIDGAEGARIGLANAVAEDPENAALA 183

Query: 138 WPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEA-NKRECKRLEERWESEEFMNAITAFFN 196
           W   H  AKL   S+ FA +  R+ M   +     + E   LEE   + + +  + AF  
Sbjct: 184 WFDEHP-AKLSASSLRFAVRAARLGMNERVKAKIAEVEALYLEELMATHDAVEGLNAFLE 242

Query: 197 RK 198
           ++
Sbjct: 243 KR 244

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. Length = 251

>gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 41/148 (27%), Positives = 59/148 (39%), Gaps = 37/148 (25%)

Query: 25  AFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGM 84
           A  +  KP+IA VNGPA+G     +A CDI+ AS+ A      VF L             
Sbjct: 92  AIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENA------VFGL------------- 132

Query: 85  TPE-------GCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDL 137
            PE       G    +  R+FG+S+   ++ TG ++ A E  + G +      EE    L
Sbjct: 133 -PEIDVGLAGGGKHAM--RLFGHSLTRRMMLTGYRVPAAELYRRGVIEACLPPEE----L 185

Query: 138 WPRI----HAWAKLPPQSMIFAKQLVRV 161
            P         A   P +   AK  +  
Sbjct: 186 MPEAMEIAREIASKSPLATRLAKDALNT 213

Length = 257

>gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 12/114 (10%)

Query: 19  LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTP 78
           LQ  + A     KP+IA ++G  IG     +  CDI + S+ A             F   
Sbjct: 100 LQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAF------------FSVK 147

Query: 79  FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 132
                +T +  +    P I G   A EL  TGR+ +  EA + G VS VF ++E
Sbjct: 148 EVDLAITADLGTLQRLPSIVGYGNAMELALTGRRFSGSEAKELGLVSRVFGSKE 201

Length = 275

>gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 14/113 (12%)

Query: 30  PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
           PKP+IA+V G A+G       +CD+  A+D A+            F       G    G 
Sbjct: 161 PKPVIAMVAGYAVGGGHILHMVCDLTIAADNAV------------FGQTGPKVGSFDAGY 208

Query: 90  SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDL--WPR 140
            S +  R+ G   A E+ +  R   A EAL+ G V+ V   +E+E +   W R
Sbjct: 209 GSSIMARLVGQKKAREMWFLARFYTASEALKMGLVNTVVPLDELEGETVKWCR 261

Length = 327

>gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 45/198 (22%), Positives = 77/198 (38%), Gaps = 26/198 (13%)

Query: 5   PTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILL 64
           P D           L +   A ++ PKP+IA ++G         +  CDIV A       
Sbjct: 79  PYDAAVARAREMTALLR---AIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGP----- 130

Query: 65  NHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFV 124
                  ++TF       G+ P   S  L PR+   + A+    TG K  A EA + G V
Sbjct: 131 -------ESTFALTEARIGVAPAIISLTLLPRLSPRA-AARYYLTGEKFGAAEAARIGLV 182

Query: 125 SGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEER--- 181
           +     ++++  +   +    +  PQ +  +K L    +L        R+ + L E    
Sbjct: 183 T--AAADDVDAAVAALLADLRRGSPQGLAESKALTTAAVL----AGFDRDAEELTEESAR 236

Query: 182 -WESEEFMNAITAFFNRK 198
            + S+E    +TAF  ++
Sbjct: 237 LFVSDEAREGMTAFLQKR 254

Length = 260

>gnl|CDD|235632 PRK05869, PRK05869, enoyl-CoA hydratase; Validated

 Score = 47.5 bits (113), Expect = 6e-07
 Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 20/142 (14%)

Query: 19  LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTP 78
            Q+ V A    PKP +A + G A+G +  TLAL     A+D  +  ++        F   
Sbjct: 88  RQQAVDAVAAIPKPTVAAITGYALG-AGLTLAL-----AADWRVSGDN------VKFGAT 135

Query: 79  FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLW 138
             L G+ P G       R  G S A EL+++GR  +A+EAL  G +  +   +    D++
Sbjct: 136 EILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALGLIDEMVAPD----DVY 191

Query: 139 PRIHAWAKL----PPQSMIFAK 156
               AWA+     PP ++  AK
Sbjct: 192 DAAAAWARRFLDGPPHALAAAK 213

Length = 222

>gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 48/181 (26%), Positives = 70/181 (38%), Gaps = 33/181 (18%)

Query: 28  DYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPE 87
            +P P+IA + G  +G      A CD+  A+  A                     GM PE
Sbjct: 98  HFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQF-------------------GM-PE 137

Query: 88  ---GCSSV----LFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPR 140
              G  SV    L PR+ G +    LL TG  ++A +AL +G V  V    E++  +   
Sbjct: 138 VRVGIPSVIHAALLPRLIGWARTRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVERL 197

Query: 141 IHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERW---ESEEFMNAITAFFNR 197
             + A   PQ++   K+L+R      L  A           +   E +  M    AF NR
Sbjct: 198 AASLAGCGPQALRQQKRLLREWEDMPLDVAIDDSVAEFGAAFLTGEPQRHMA---AFLNR 254

Query: 198 K 198
           K
Sbjct: 255 K 255

Length = 256

>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 12/109 (11%)

Query: 26  FIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMT 85
             D P P +A +NG A+G        C+ V A+D  I  +       A    P T  G+ 
Sbjct: 98  LEDLPVPTVAAINGIALG------GGCECVLATDFRIADD------TAKIGLPETKLGIM 145

Query: 86  PEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE 134
           P    +V  PR+ G   A E + +G++  A++AL+ G V  V T +++ 
Sbjct: 146 PGFGGTVRLPRVIGADNALEWIASGKENRAEDALKVGAVDAVVTADKLG 194

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714

>gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 42/123 (34%), Positives = 56/123 (45%), Gaps = 21/123 (17%)

Query: 31  KPLIAIVNGP--AIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPE 87
           KPL+  V G    +GI    L L  DIV A+D               F      RG+ P 
Sbjct: 93  KPLVVAVQGYCLTLGIE---LMLAADIVVAADNT------------RFAQLEVQRGILPF 137

Query: 88  GCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTT-EEIER--DLWPRIHAW 144
           G +++ FP+  G   A   L TG + +AQEAL+ G V  V    E++ER  +L  RI   
Sbjct: 138 GGATLRFPQAAGWGNAMRYLLTGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIARA 197

Query: 145 AKL 147
           A L
Sbjct: 198 APL 200

Length = 255

>gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional

 Score = 45.0 bits (107), Expect = 7e-06
 Identities = 42/178 (23%), Positives = 68/178 (38%), Gaps = 33/178 (18%)

Query: 30  PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
             P IA + G  +G  A   A CD+  A+ +A             F  P      T   C
Sbjct: 102 RVPTIAAIAGACVGGGAAIAAACDLRIATPSA------------RFGFPI---ARTLGNC 146

Query: 90  SSVL-FPRI---FGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWA 145
            S+    R+    G +   ++L+T R L A+EAL  G V+ V     ++     R  A A
Sbjct: 147 LSMSNLARLVALLGAARVKDMLFTARLLEAEEALAAGLVNEVVEDAALDA----RADALA 202

Query: 146 K----LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEER-WESEEFMNAITAFFNRK 198
           +      P ++   K+ +R      L      +   L    + SE+F   + AF  ++
Sbjct: 203 ELLAAHAPLTLRATKEALR-----RLRREGLPDGDDLIRMCYMSEDFREGVEAFLEKR 255

Length = 262

>gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 18/100 (18%)

Query: 31  KPLIAIVNGPAI--GISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPE 87
           KP+IA V+G A+  G+    LAL CD+  A + A+     VF  +  +  P  + G T  
Sbjct: 94  KPVIAAVSGYAVAGGLE---LALWCDLRVAEEDAVF---GVFCRR--WGVPL-IDGGT-- 142

Query: 88  GCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGV 127
               V  PR+ G+S A +L+ TGR ++A EAL  G  + V
Sbjct: 143 ----VRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRV 178

Length = 254

>gnl|CDD|181386 PRK08321, PRK08321, naphthoate synthase; Validated

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 32/110 (29%), Positives = 44/110 (40%), Gaps = 21/110 (19%)

Query: 30  PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQ-----ATFHTPFTLRGM 84
           PK +IA+V G A G   +   +CD+  AS       H  F  Q      +F         
Sbjct: 135 PKVVIAVVPGWAAGGGHSLHVVCDLTLAS-----REHARF-KQTDADVGSFDG------- 181

Query: 85  TPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE 134
              G  S    R  G   A E+ + GR  +A+EA   G V+ V    E+E
Sbjct: 182 ---GYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELE 228

Length = 302

>gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 23/114 (20%)

Query: 24  AAFIDYPKPLIAIVNG----PAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPF 79
            A  +   P+IA V+G      IG+        D++ ASD             ATF  P 
Sbjct: 88  RAVYECAVPVIAAVHGFCLGGGIGLVGNA----DVIVASD------------DATFGLPE 131

Query: 80  TLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEI 133
             RG    G ++ L  R+    +   L +T   + A E   +G V  V   +++
Sbjct: 132 VDRGAL--GAATHL-QRLVPQHLMRALFFTAATITAAELHHFGSVEEVVPRDQL 182

Length = 249

>gnl|CDD|235936 PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 40/182 (21%), Positives = 66/182 (36%), Gaps = 28/182 (15%)

Query: 14  DTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQ 72
             + T     +  ++ P P+IA + G AIG     L L  DIV  S  ++          
Sbjct: 78  KGTFTEANLYSLALNCPIPVIAAMQGHAIG-GGLVLGLYADIVVLSRESV---------- 126

Query: 73  ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYG-FVSGVFTTE 131
             +   F   G TP   ++ + P   G ++  E+L T R     E  + G     +   E
Sbjct: 127 --YTANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYYRGAELKKRGVPFPVLPRAE 184

Query: 132 ------EIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESE 185
                 E+ R L       A+ P  S++  K  +       L E  ++E    E+ +   
Sbjct: 185 VLEKALELARSL-------AEKPRHSLVLLKDHLVADRRRRLPEVIEQEVAMHEKTFHQP 237

Query: 186 EF 187
           E 
Sbjct: 238 EV 239

Length = 249

>gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional

 Score = 41.9 bits (99), Expect = 7e-05
 Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 18/128 (14%)

Query: 30  PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
           P P+IA +NGPAIG +   LA+ CD+             V   +A F  P    G+  + 
Sbjct: 86  PVPVIAAINGPAIG-AGLQLAMACDL------------RVVAPEAYFQFPVAKYGIALDN 132

Query: 89  CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLP 148
            +      + G   A  +L    KL A++AL  G  + + T      D        A L 
Sbjct: 133 WTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMANRIGTLA----DAQAWAAEIAGLA 188

Query: 149 PQSMIFAK 156
           P ++  AK
Sbjct: 189 PLALQHAK 196

Length = 243

>gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional

 Score = 40.2 bits (95), Expect = 3e-04
 Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 14/99 (14%)

Query: 30  PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
           P P+IA + G   G     +AL  DI  A+    L      +++A +       G+ P+ 
Sbjct: 102 PVPVIAALEGVCFG-GGLQIALGADIRIAAPDTKLS-----IMEAKW-------GLVPDM 148

Query: 89  CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGV 127
             +V    +    VA EL YT R  +A+EAL+ G V+ V
Sbjct: 149 AGTVSLRGLVRKDVARELTYTARVFSAEEALELGLVTHV 187

Length = 262

>gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 19/108 (17%)

Query: 30  PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGM---TP 86
           P+P+IA V+G A       +A CD+  A+DTA             F  P    G+   TP
Sbjct: 104 PQPVIARVHGIATAAGCQLVASCDLAVAADTA------------RFAVPGVNIGLFCSTP 151

Query: 87  EGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE 134
                V   R      A E+L TG  ++A  A ++G V+ V   + ++
Sbjct: 152 ----MVALSRNVPRKQAMEMLLTGEFIDAATAREWGLVNRVVPADALD 195

Length = 266

>gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase; Validated

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 29  YPKPLIAIVNGPAIGISATTLALCDIVFASDTA 61
           Y KP IA+VNG   G   + L  CD+  A+D A
Sbjct: 103 YQKPTIAMVNGWCFGGGFSPLVACDLAIAADEA 135

Length = 275

>gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 15/108 (13%)

Query: 20  QKYVAAF--IDY-PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFH 76
           +++   F  I Y   P+IA ++G  +G      +   I  A ++              F 
Sbjct: 79  RRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTY------------FA 126

Query: 77  TPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFV 124
            P   RG+   G  SV  PR+ G +  ++++ TGR  +AQE  + G  
Sbjct: 127 LPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQEGERLGLA 174

Length = 255

>gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 14/104 (13%)

Query: 31  KPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
           KP+I  +NG AI  +   +AL CDI+ AS  A  ++          H  F   G+ P   
Sbjct: 100 KPIIGAINGFAI-TAGFEIALACDILVASRGAKFIDT---------HAKF---GIFPSWG 146

Query: 90  SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEI 133
            S    RI G + A E+  T   L A+ A ++G V+ V    E+
Sbjct: 147 LSQKLSRIIGANRAREVSLTAMPLTAETAERWGLVNHVVEESEL 190

Length = 265

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	198
PRK08150	255	enoyl-CoA hydratase; Provisional	100.0
PRK09076	258	enoyl-CoA hydratase; Provisional	100.0
PRK05862	257	enoyl-CoA hydratase; Provisional	100.0
PLN02600	251	enoyl-CoA hydratase	100.0
PRK05980	260	enoyl-CoA hydratase; Provisional	100.0
PRK06143	256	enoyl-CoA hydratase; Provisional	100.0
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	100.0
PRK07657	260	enoyl-CoA hydratase; Provisional	100.0
PRK09245	266	enoyl-CoA hydratase; Provisional	100.0
PRK08140	262	enoyl-CoA hydratase; Provisional	100.0
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	100.0
PRK07658	257	enoyl-CoA hydratase; Provisional	100.0
PRK06142	272	enoyl-CoA hydratase; Provisional	100.0
PRK08138	261	enoyl-CoA hydratase; Provisional	100.0
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	100.0
PRK06563	255	enoyl-CoA hydratase; Provisional	100.0
PRK08258	277	enoyl-CoA hydratase; Provisional	100.0
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	100.0
KOG1680|consensus	290		100.0
PRK07260	255	enoyl-CoA hydratase; Provisional	100.0
PRK06127	269	enoyl-CoA hydratase; Provisional	100.0
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	100.0
PRK05981	266	enoyl-CoA hydratase; Provisional	100.0
PRK06023	251	enoyl-CoA hydratase; Provisional	100.0
PRK08139	266	enoyl-CoA hydratase; Validated	100.0
PRK07511	260	enoyl-CoA hydratase; Provisional	100.0
PLN02888	265	enoyl-CoA hydratase	100.0
PRK06688	259	enoyl-CoA hydratase; Provisional	100.0
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	100.0
PRK07468	262	enoyl-CoA hydratase; Provisional	100.0
PRK07659	260	enoyl-CoA hydratase; Provisional	100.0
PRK06494	259	enoyl-CoA hydratase; Provisional	100.0
PRK05995	262	enoyl-CoA hydratase; Provisional	100.0
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	100.0
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	100.0
PRK07799	263	enoyl-CoA hydratase; Provisional	100.0
PRK08252	254	enoyl-CoA hydratase; Provisional	100.0
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	100.0
PRK06210	272	enoyl-CoA hydratase; Provisional	100.0
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	100.0
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	100.0
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	100.0
PRK07938	249	enoyl-CoA hydratase; Provisional	100.0
PRK08259	254	enoyl-CoA hydratase; Provisional	100.0
PRK05870	249	enoyl-CoA hydratase; Provisional	100.0
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	100.0
PRK07327	268	enoyl-CoA hydratase; Provisional	100.0
PRK06144	262	enoyl-CoA hydratase; Provisional	100.0
PRK05864	276	enoyl-CoA hydratase; Provisional	100.0
PRK06495	257	enoyl-CoA hydratase; Provisional	100.0
PRK08260	296	enoyl-CoA hydratase; Provisional	100.0
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	100.0
PRK07854	243	enoyl-CoA hydratase; Provisional	100.0
PRK07509	262	enoyl-CoA hydratase; Provisional	100.0
PLN02921	327	naphthoate synthase	100.0
PRK06072	248	enoyl-CoA hydratase; Provisional	100.0
PRK08321	302	naphthoate synthase; Validated	100.0
PRK07827	260	enoyl-CoA hydratase; Provisional	100.0
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	100.0
PRK06190	258	enoyl-CoA hydratase; Provisional	100.0
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	100.0
PRK12478	298	enoyl-CoA hydratase; Provisional	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
PLN02874	379	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
KOG1679|consensus	291		100.0
PRK11730	715	fadB multifunctional fatty acid oxidation complex	100.0
PRK05869	222	enoyl-CoA hydratase; Validated	100.0
PRK06213	229	enoyl-CoA hydratase; Provisional	100.0
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	100.0
PRK08788	287	enoyl-CoA hydratase; Validated	100.0
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PRK08290	288	enoyl-CoA hydratase; Provisional	100.0
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	100.0
PRK08272	302	enoyl-CoA hydratase; Provisional	100.0
KOG0016|consensus	266		100.0
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	100.0
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	100.0
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	100.0
KOG1681|consensus	292		100.0
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	100.0
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	100.0
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
COG0447	282	MenB Dihydroxynaphthoic acid synthase [Coenzyme me	99.97
KOG1682|consensus	287		99.97
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	99.96
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	99.96
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	99.96
KOG1684|consensus	401		99.91
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	99.84
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	99.79
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	99.63
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	99.52
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	99.52
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	99.43
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	99.29
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	99.29
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	99.29
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	99.28
cd07015	172	Clp_protease_NfeD Nodulation formation efficiency	98.97
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	98.88
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	98.83
PRK00277	200	clpP ATP-dependent Clp protease proteolytic subuni	98.78
PRK12319	256	acetyl-CoA carboxylase subunit alpha; Provisional	98.77
CHL00198	322	accA acetyl-CoA carboxylase carboxyltransferase al	98.65
PRK10949	618	protease 4; Provisional	98.65
PRK11778	330	putative inner membrane peptidase; Provisional	98.61
PRK12553	207	ATP-dependent Clp protease proteolytic subunit; Re	98.59
PLN03230	431	acetyl-coenzyme A carboxylase carboxyl transferase	98.57
PRK14512	197	ATP-dependent Clp protease proteolytic subunit; Pr	98.57
TIGR00513	316	accA acetyl-CoA carboxylase, carboxyl transferase,	98.56
cd07017	171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	98.56
KOG1683|consensus	380		98.55
PRK05724	319	acetyl-CoA carboxylase carboxyltransferase subunit	98.51
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	98.51
PF00574	182	CLP_protease: Clp protease; InterPro: IPR001907 In	98.51
CHL00028	200	clpP ATP-dependent Clp protease proteolytic subuni	98.43
PF01343	154	Peptidase_S49: Peptidase family S49 peptidase clas	98.42
TIGR00493	191	clpP ATP-dependent Clp protease, proteolytic subun	98.36
TIGR03133	274	malonate_beta malonate decarboxylase, beta subunit	98.35
PRK14514	221	ATP-dependent Clp protease proteolytic subunit; Pr	98.33
PRK12551	196	ATP-dependent Clp protease proteolytic subunit; Re	98.32
PRK14513	201	ATP-dependent Clp protease proteolytic subunit; Pr	98.32
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	98.32
PRK07189	301	malonate decarboxylase subunit beta; Reviewed	98.1
PRK05654	292	acetyl-CoA carboxylase subunit beta; Validated	98.08
TIGR00515	285	accD acetyl-CoA carboxylase, carboxyl transferase,	97.9
COG0740	200	ClpP Protease subunit of ATP-dependent Clp proteas	97.87
PF01972	285	SDH_sah: Serine dehydrogenase proteinase; InterPro	97.86
CHL00174	296	accD acetyl-CoA carboxylase beta subunit; Reviewed	97.75
TIGR03134	238	malonate_gamma malonate decarboxylase, gamma subun	97.74
PRK12552	222	ATP-dependent Clp protease-like protein; Reviewed	97.69
COG1030	436	NfeD Membrane-bound serine protease (ClpP class) [	97.55
COG0825	317	AccA Acetyl-CoA carboxylase alpha subunit [Lipid m	97.54
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	97.48
PF13766	118	ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PD	97.42
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	97.31
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	97.23
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	97.15
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	96.96
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	96.53
COG4799	526	Acetyl-CoA carboxylase, carboxyltransferase compon	96.41
PRK10949	618	protease 4; Provisional	96.41
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	96.16
COG0777	294	AccD Acetyl-CoA carboxylase beta subunit [Lipid me	95.42
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	95.13
KOG0840|consensus	275		93.3
COG4799	526	Acetyl-CoA carboxylase, carboxyltransferase compon	88.08

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.9e-44  Score=298.11  Aligned_cols=186  Identities=19%  Similarity=0.175  Sum_probs=173.6

Q ss_pred             CCCCccCchhhhhhh-------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceE
Q psy5402           1 MTNNPTDLINEDTDT-------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA   73 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~-------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a   73 (198)
                      .||+|.|++++....       ...+++++.+|.++||||||+|||+|+|||++|+++||+||++++            +
T Consensus        56 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~------------a  123 (255)
T PRK08150         56 HFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADES------------T  123 (255)
T ss_pred             ceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCC------------C
Confidence            489999999875321       234567788999999999999999999999999999999999999            9


Q ss_pred             EEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHH
Q psy5402          74 TFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMI  153 (198)
Q Consensus        74 ~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~  153 (198)
                      +|++||+++|++|++|+++++++++|..+|++++++|+.|+|+||+++||||++||++++.+++.+++++++..||.+++
T Consensus       124 ~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~  203 (255)
T PRK08150        124 YFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQNAPLTNF  203 (255)
T ss_pred             EEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         154 FAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       154 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      .+|+.++.....++++.++.|...+...+.++|+++++.+|++||
T Consensus       204 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~~kr  248 (255)
T PRK08150        204 AVLNALPRIADMSADDGLFVESLMAAVAQSAPEAKERLRAFLEKK  248 (255)
T ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccC
Confidence            999999987777888888889888899999999999999999987

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.3e-44  Score=297.52  Aligned_cols=186  Identities=20%  Similarity=0.274  Sum_probs=173.8

Q ss_pred             CCCCccCchhhhhhh-------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceE
Q psy5402           1 MTNNPTDLINEDTDT-------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA   73 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~-------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a   73 (198)
                      .||+|.|++++....       ...+.+++.++.++||||||+|||+|+|||++|+++||+||++++            +
T Consensus        59 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~------------a  126 (258)
T PRK09076         59 FFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQ------------A  126 (258)
T ss_pred             ceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCC------------C
Confidence            389999999874321       224566788999999999999999999999999999999999999            9


Q ss_pred             EEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHH
Q psy5402          74 TFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMI  153 (198)
Q Consensus        74 ~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~  153 (198)
                      +|++||+++|++|++|+++++++++|..++++++++|+.++|+||+++||||+|+|++++.+++.+++++++..||.+++
T Consensus       127 ~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~  206 (258)
T PRK09076        127 QMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQSPSAVA  206 (258)
T ss_pred             EeeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHHhCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         154 FAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       154 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      .+|+.++.....++++.++.|...+..++.++|+++++++|++||
T Consensus       207 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr  251 (258)
T PRK09076        207 ACKTLIQAARNGPRAAALALERELFVDLFDTEDQREGVNAFLEKR  251 (258)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCC
Confidence            999999987777889999999999999999999999999999987

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.4e-44  Score=296.72  Aligned_cols=186  Identities=24%  Similarity=0.306  Sum_probs=174.1

Q ss_pred             CCCCccCchhhhhhh-----HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEE
Q psy5402           1 MTNNPTDLINEDTDT-----SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATF   75 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~-----~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~   75 (198)
                      .||+|.|++++....     ...+.+++.+|..+||||||+|||+|+|||++|+++||+||++++            ++|
T Consensus        60 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~------------a~f  127 (257)
T PRK05862         60 AFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADT------------AKF  127 (257)
T ss_pred             ceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCC------------CEE
Confidence            389999999875321     123455778899999999999999999999999999999999999            999


Q ss_pred             ecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHH
Q psy5402          76 HTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFA  155 (198)
Q Consensus        76 ~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~  155 (198)
                      ++||+++|++|++|++++|++++|..++++++++|+.++|+||+++||||+++|++++.+++.++++++++.+|.+++.+
T Consensus       128 ~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~  207 (257)
T PRK05862        128 GQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIASFSLPAVMMA  207 (257)
T ss_pred             eCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         156 KQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       156 K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      |+.++.....++++.++.|...+..++.++|+++++++|++||
T Consensus       208 K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~e~i~af~~kr  250 (257)
T PRK05862        208 KEAVNRAYETTLAEGLLFERRLFHSLFATEDQKEGMAAFVEKR  250 (257)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccC
Confidence            9999988777899999999999999999999999999999987

>PLN02600 enoyl-CoA hydratase

Probab=100.00  E-value=4.8e-44  Score=296.18  Aligned_cols=186  Identities=22%  Similarity=0.304  Sum_probs=173.8

Q ss_pred             CCCCccCchhhhhhh-------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceE
Q psy5402           1 MTNNPTDLINEDTDT-------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA   73 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~-------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a   73 (198)
                      .||+|.|++++....       ...+++++.++..+||||||+|||+|+|||++|+++||+||++++            +
T Consensus        52 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~------------a  119 (251)
T PLN02600         52 VFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEE------------A  119 (251)
T ss_pred             ceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCC------------C
Confidence            389999999874311       223456788899999999999999999999999999999999999            9


Q ss_pred             EEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHH
Q psy5402          74 TFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMI  153 (198)
Q Consensus        74 ~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~  153 (198)
                      +|++||+++|++|++|+++++++++|..++++++++|+.++++||+++||||+++|++++.+++.++++++++.||.+++
T Consensus       120 ~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~p~a~~  199 (251)
T PLN02600        120 VFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLVNYCVPAGEAYEKALELAQEINQKGPLAIK  199 (251)
T ss_pred             EEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         154 FAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       154 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      .+|+.++.....++++.++.|...+..++.++|+++++++|++||
T Consensus       200 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr  244 (251)
T PLN02600        200 MAKKAINEGSEVDMASGLEIEEECYEQVLKTKDRLEGLAAFAEKR  244 (251)
T ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCC
Confidence            999999988777899999999999999999999999999999987

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.9e-44  Score=298.00  Aligned_cols=186  Identities=24%  Similarity=0.290  Sum_probs=173.1

Q ss_pred             CCCCccCchhhhhh-----------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcc
Q psy5402           1 MTNNPTDLINEDTD-----------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVF   69 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~-----------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~   69 (198)
                      .||+|.|++++...           ....+++++.++..+||||||+|||+|+|||++|+++||+||++++         
T Consensus        60 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~---------  130 (260)
T PRK05980         60 AFSAGADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASER---------  130 (260)
T ss_pred             ceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCC---------
Confidence            48999999986431           0112346778899999999999999999999999999999999999         


Q ss_pred             cceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCH
Q psy5402          70 VLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP  149 (198)
Q Consensus        70 ~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~  149 (198)
                         ++|++||+++|++|++|+++++++++|..+|++++++|++++++||+++||||+|+|++++.+++.++++++++.||
T Consensus       131 ---a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p  207 (260)
T PRK05980        131 ---ALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRIIRHSP  207 (260)
T ss_pred             ---CEecCcccccCCCCCchHhhHHHhhcCHHHHHHHHHcCCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhCCH
Confidence               99999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         150 QSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       150 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      .+++.+|+.++.....++++.++.|...+...+.++|+++++.+|++||
T Consensus       208 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  256 (260)
T PRK05980        208 VAVAAILTAVTRGLNLSIAEGLLIESEQFARMAGSADLREGLAAWIERR  256 (260)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccC
Confidence            9999999999988777889999999999999999999999999999987

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6e-44  Score=296.39  Aligned_cols=185  Identities=26%  Similarity=0.325  Sum_probs=172.5

Q ss_pred             CCCCccCchhhhhhh-------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceE
Q psy5402           1 MTNNPTDLINEDTDT-------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA   73 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~-------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a   73 (198)
                      .||+|.|++++....       ...+++++..|.++||||||+|||+|+|||++|+++||+||++++            +
T Consensus        64 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~------------a  131 (256)
T PRK06143         64 AFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHD------------A  131 (256)
T ss_pred             cccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCC------------C
Confidence            489999999874321       234567888999999999999999999999999999999999999            9


Q ss_pred             EEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHH
Q psy5402          74 TFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMI  153 (198)
Q Consensus        74 ~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~  153 (198)
                      +|++||+++|+ |++++++++++++|..+|++++++|+.++|+||+++||||++||++++.+++.+++++++..||.+++
T Consensus       132 ~f~~pe~~~G~-p~~~~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~  210 (256)
T PRK06143        132 QFGMPEVRVGI-PSVIHAALLPRLIGWARTRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGCGPQALR  210 (256)
T ss_pred             EEeCCccccCC-CCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999998 77788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         154 FAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       154 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      .+|+.++.....++++.++.|...+...+.++|+++++++|++||
T Consensus       211 ~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr  255 (256)
T PRK06143        211 QQKRLLREWEDMPLDVAIDDSVAEFGAAFLTGEPQRHMAAFLNRK  255 (256)
T ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhc
Confidence            999999988778899999999999999999999999999999987

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=100.00  E-value=8.5e-44  Score=295.41  Aligned_cols=186  Identities=23%  Similarity=0.357  Sum_probs=172.9

Q ss_pred             CCCCccCchhhhhhh------HH----HHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCccc
Q psy5402           1 MTNNPTDLINEDTDT------SI----TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFV   70 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~------~~----~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~   70 (198)
                      .||+|.|++++....      ..    .+.+++.++.++||||||+|||+|+|||++|+++||+||++++          
T Consensus        54 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~----------  123 (256)
T TIGR02280        54 GFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAES----------  123 (256)
T ss_pred             CcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCC----------
Confidence            489999999875321      11    1345677899999999999999999999999999999999999          


Q ss_pred             ceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHH
Q psy5402          71 LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQ  150 (198)
Q Consensus        71 ~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~  150 (198)
                        ++|++||+++|++|++|+++++++++|..++++++++|++++++||+++||||+++|++++.+++.++++++++.||.
T Consensus       124 --a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~  201 (256)
T TIGR02280       124 --ARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQPTR  201 (256)
T ss_pred             --CEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCCHH
Confidence              999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         151 SMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       151 a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +++.+|+.++.....++++.++.|...+..++.++|+++++.+|++||
T Consensus       202 ~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr  249 (256)
T TIGR02280       202 GLALTKRAIQAAATNSLDTQLDLERDLQRELGRSADYAEGVTAFLDKR  249 (256)
T ss_pred             HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHcCC
Confidence            999999999988777889999999999999999999999999999987

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.4e-43  Score=294.66  Aligned_cols=186  Identities=24%  Similarity=0.312  Sum_probs=174.1

Q ss_pred             CCCCccCchhhhhh-------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceE
Q psy5402           1 MTNNPTDLINEDTD-------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA   73 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~-------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a   73 (198)
                      .||+|.|++++...       ....+++++..|..+||||||+|||+|+|||++|+++||+||++++            +
T Consensus        61 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~------------a  128 (260)
T PRK07657         61 AFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAES------------A  128 (260)
T ss_pred             ceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCC------------C
Confidence            38999999987431       1224567888999999999999999999999999999999999999            9


Q ss_pred             EEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHH
Q psy5402          74 TFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMI  153 (198)
Q Consensus        74 ~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~  153 (198)
                      +|++||+++|++|++|+++++++++|..++++++++|++++++||+++||||+++|++++.+++.+++++++..||.+++
T Consensus       129 ~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~  208 (260)
T PRK07657        129 SLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASNGPIAVR  208 (260)
T ss_pred             EEcCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         154 FAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       154 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      .+|+.++.....++++.++.|...+...+.++|+++++++|++||
T Consensus       209 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~~r  253 (260)
T PRK07657        209 QAKEAISNGIQVDLHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKR  253 (260)
T ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCC
Confidence            999999988777889999999999999999999999999999986

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.7e-43  Score=294.99  Aligned_cols=186  Identities=26%  Similarity=0.418  Sum_probs=172.8

Q ss_pred             CCCCccCchhhhhh--------------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCC
Q psy5402           1 MTNNPTDLINEDTD--------------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNH   66 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~--------------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~   66 (198)
                      .||+|.|++++...              ....+.+++.++.++||||||+|||+|+|||++|+++||+||++++      
T Consensus        60 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~------  133 (266)
T PRK09245         60 AFSSGGNVKDMRARVGAFGGSPADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASET------  133 (266)
T ss_pred             CcccCcCHHHHhhccccccccchhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCC------
Confidence            48999999987431              0112456778899999999999999999999999999999999999      


Q ss_pred             CcccceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhc
Q psy5402          67 PVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK  146 (198)
Q Consensus        67 ~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~  146 (198)
                            ++|++||+++|++|++|+++++++++|..+|++++++|++++|+||+++||||+++|++++.+++.++++++++
T Consensus       134 ------a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~  207 (266)
T PRK09245        134 ------ARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERIAA  207 (266)
T ss_pred             ------CEEcccccccCcCCCcchhhhHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHh
Confidence                  99999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         147 LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       147 ~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      .||.+++.+|+.++.....++++.++.|.+.+..++.++|+++++.+|++||
T Consensus       208 ~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr  259 (266)
T PRK09245        208 NPPHALRLTKRLLREGQHASLDTLLELSAAYQALAHHTADHREAVDAFLEKR  259 (266)
T ss_pred             CCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHHcCC
Confidence            9999999999999988777888888999999999999999999999999987

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.1e-43  Score=293.93  Aligned_cols=186  Identities=25%  Similarity=0.377  Sum_probs=172.5

Q ss_pred             CCCCccCchhhhhhh-------H----HHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcc
Q psy5402           1 MTNNPTDLINEDTDT-------S----ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVF   69 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~-------~----~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~   69 (198)
                      .||+|.|++++....       .    ..+.+++.++.++||||||+|||+|+|||++|+++||+||++++         
T Consensus        59 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~---------  129 (262)
T PRK08140         59 GFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARS---------  129 (262)
T ss_pred             CcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCC---------
Confidence            389999999874211       1    12345778899999999999999999999999999999999999         


Q ss_pred             cceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCH
Q psy5402          70 VLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP  149 (198)
Q Consensus        70 ~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~  149 (198)
                         ++|++||+++|++|++|+++++++++|..++++++++|++++++||+++||||+|+|++++.+++.++++++++.||
T Consensus       130 ---a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~  206 (262)
T PRK08140        130 ---ASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLATQPT  206 (262)
T ss_pred             ---CEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCH
Confidence               99999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         150 QSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       150 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      .+++.+|+.++.....++++.++.|...+...+.++|+++++.+|++||
T Consensus       207 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  255 (262)
T PRK08140        207 RGLALIKQAMNASATNTLDAQLDLERDLQREAGRSADYAEGVSAFLEKR  255 (262)
T ss_pred             HHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCC
Confidence            9999999999988788899999999999999999999999999999987

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=100.00  E-value=1.9e-43  Score=293.26  Aligned_cols=186  Identities=28%  Similarity=0.343  Sum_probs=174.3

Q ss_pred             CCCCccCchhhhhhh-----HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEE
Q psy5402           1 MTNNPTDLINEDTDT-----SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATF   75 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~-----~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~   75 (198)
                      .||+|.|++++....     ...+.+++.++..+||||||+|||+|+|||++|+++||+||++++            ++|
T Consensus        58 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~------------a~f  125 (255)
T PRK09674         58 FFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGEN------------ARF  125 (255)
T ss_pred             ceecccChHhHhccchhhhHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCC------------CEE
Confidence            389999999875321     224466788999999999999999999999999999999999999            999


Q ss_pred             ecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHH
Q psy5402          76 HTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFA  155 (198)
Q Consensus        76 ~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~  155 (198)
                      ++||+++|++|++|+++++++++|+.++++++++|+.++++||+++||||+++|++++.+++.+++++++..||.+++.+
T Consensus       126 ~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~  205 (255)
T PRK09674        126 GLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIARHSPLALRAA  205 (255)
T ss_pred             eCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         156 KQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       156 K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      |+.++.....++++.++.|.+.+..++.++|+++++++|++||
T Consensus       206 K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~i~af~~kr  248 (255)
T PRK09674        206 KQALRQSQEVDLQAGLAQERQLFTLLAATEDRHEGISAFLEKR  248 (255)
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccC
Confidence            9999988778899999999999999999999999999999986

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.4e-43  Score=294.10  Aligned_cols=186  Identities=26%  Similarity=0.358  Sum_probs=173.8

Q ss_pred             CCCCccCchhhhhhh--------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccce
Q psy5402           1 MTNNPTDLINEDTDT--------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQ   72 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~--------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~   72 (198)
                      .||+|.|++++....        ...+++++.++.++||||||+|||+|+|||++|+++||+||++++            
T Consensus        57 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~------------  124 (257)
T PRK07658         57 FFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATES------------  124 (257)
T ss_pred             ceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCC------------
Confidence            389999999874311        123467888999999999999999999999999999999999999            


Q ss_pred             EEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHH
Q psy5402          73 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSM  152 (198)
Q Consensus        73 a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~  152 (198)
                      ++|++||+++|++|++|+++++++++|..+|++++++|++++++||+++||||+++|++++.+++.++++++++.||.++
T Consensus       125 a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~  204 (257)
T PRK07658        125 AKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKSPATT  204 (257)
T ss_pred             CcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHHHhCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         153 IFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       153 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +.+|+.++.....++++.++.|...+..++.++|.++++.+|++||
T Consensus       205 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~kr  250 (257)
T PRK07658        205 RAVLELLQTTKSSSYYEGVKREAKIFGEVFTSEDAKEGVQAFLEKR  250 (257)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence            9999999988777889999999999999999999999999999986

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-43  Score=296.60  Aligned_cols=186  Identities=24%  Similarity=0.288  Sum_probs=172.6

Q ss_pred             CCCCccCchhhhhh---------------h---HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCc
Q psy5402           1 MTNNPTDLINEDTD---------------T---SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAI   62 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~---------------~---~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~   62 (198)
                      .||+|.|++++...               .   ...+++++.+|..+||||||+|||+|+|||++|+++||+||++++  
T Consensus        62 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~--  139 (272)
T PRK06142         62 HFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASAD--  139 (272)
T ss_pred             ceecccCHHHHhhhcccccccccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCC--
Confidence            38999999986431               0   123456788899999999999999999999999999999999999  


Q ss_pred             ccCCCcccceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCc-hhHHHHHHHHH
Q psy5402          63 LLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTT-EEIERDLWPRI  141 (198)
Q Consensus        63 ~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~-~~l~~~a~~~a  141 (198)
                                ++|++||+++|++|++|+++++++++|..+|++++++|++++|+||+++||||+|+|+ +++.+.+.+++
T Consensus       140 ----------a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a  209 (272)
T PRK06142        140 ----------AKFSVREVDLGMVADVGSLQRLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATA  209 (272)
T ss_pred             ----------CeecchhhhhCCCCCchHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHH
Confidence                      9999999999999999999999999999999999999999999999999999999996 88999999999


Q ss_pred             HHHhcCCHHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         142 HAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       142 ~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +++++.||.+++.+|+.++.....++++.++.|...+...+.++|++|++.+|++||
T Consensus       210 ~~ia~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~~d~~egv~af~~kr  266 (272)
T PRK06142        210 REIAAKSPLAVRGTKEVLDYMRDHRVADGLRYVATWNAAMLPSKDLTEAIAAHMEKR  266 (272)
T ss_pred             HHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcCC
Confidence            999999999999999999988777889999999999999999999999999999987

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.6e-43  Score=293.28  Aligned_cols=186  Identities=26%  Similarity=0.331  Sum_probs=173.7

Q ss_pred             CCCCccCchhhhhhh-----HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEE
Q psy5402           1 MTNNPTDLINEDTDT-----SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATF   75 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~-----~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~   75 (198)
                      .||+|.|++++....     ...+++++..+..+||||||+|||+|+|||++|+++||+||++++            ++|
T Consensus        64 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~------------a~f  131 (261)
T PRK08138         64 VFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGES------------ASF  131 (261)
T ss_pred             CeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCC------------CEe
Confidence            389999999875321     234567888999999999999999999999999999999999999            999


Q ss_pred             ecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHH
Q psy5402          76 HTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFA  155 (198)
Q Consensus        76 ~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~  155 (198)
                      ++||+++|++|++|+++++++++|..++++++++|+.++++||+++||||+++|++++.+++.++++++++.||.+++.+
T Consensus       132 ~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~  211 (261)
T PRK08138        132 GQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREIARMPPLALAQI  211 (261)
T ss_pred             eCcccccccCCCCcHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         156 KQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       156 K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      |+.++.....++++.++.|.+.+..++.++++++++++|++||
T Consensus       212 K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~af~~kr  254 (261)
T PRK08138        212 KEVVLAGADAPLDAALALERKAFQLLFDSEDQKEGMDAFLEKR  254 (261)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCC
Confidence            9999988777888899999999999999999999999999987

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=100.00  E-value=2.8e-43  Score=292.84  Aligned_cols=186  Identities=27%  Similarity=0.353  Sum_probs=174.3

Q ss_pred             CCCCccCchhhhhhh-------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceE
Q psy5402           1 MTNNPTDLINEDTDT-------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA   73 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~-------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a   73 (198)
                      .||+|.|++++....       ...+++++.+|.++||||||+|||+|+|||++|+++||+||++++            +
T Consensus        61 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~------------a  128 (260)
T PRK05809         61 AFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEK------------A  128 (260)
T ss_pred             ceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCC------------C
Confidence            489999999875321       123456788999999999999999999999999999999999999            9


Q ss_pred             EEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHH
Q psy5402          74 TFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMI  153 (198)
Q Consensus        74 ~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~  153 (198)
                      +|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+++|++++.+.+.+++++++..||.+++
T Consensus       129 ~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~  208 (260)
T PRK05809        129 KFGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANAPIAVK  208 (260)
T ss_pred             EEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHHhCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         154 FAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       154 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      .+|+.++.....++++.++.|.+.+..++.++|+++++++|++||
T Consensus       209 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~~r  253 (260)
T PRK05809        209 LCKDAINRGMQVDIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKR  253 (260)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCC
Confidence            999999988778899999999999999999999999999999987

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.5e-43  Score=292.41  Aligned_cols=186  Identities=23%  Similarity=0.273  Sum_probs=170.3

Q ss_pred             CCCCccCchhhhhhh----H---H-HHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccce
Q psy5402           1 MTNNPTDLINEDTDT----S---I-TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQ   72 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~----~---~-~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~   72 (198)
                      .||+|.|++++....    .   . ..+.+...+.++||||||+|||+|+|||++|+++||+||++++            
T Consensus        55 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~------------  122 (255)
T PRK06563         55 HFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADN------------  122 (255)
T ss_pred             CCcCCcCHHHHhhccccchhhhhhhhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCC------------
Confidence            489999999875421    1   1 1222334588999999999999999999999999999999999            


Q ss_pred             EEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHH
Q psy5402          73 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSM  152 (198)
Q Consensus        73 a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~  152 (198)
                      ++|++||+++|++|++|+++++++++|..+|++++++|+.++++||+++||||+++|++++.+++.++++++++.||.++
T Consensus       123 a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~  202 (255)
T PRK06563        123 TRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIARAAPLGV  202 (255)
T ss_pred             CEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHhcCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         153 IFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       153 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +.+|+.++.....++.+.++.|...+..++.++|+++++.+|++||
T Consensus       203 ~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr  248 (255)
T PRK06563        203 QATLASARAAVREGEAAAAAQLPPELRPLFTSEDAKEGVQAFLERR  248 (255)
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCC
Confidence            9999999987777889999999999999999999999999999987

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.6e-43  Score=294.74  Aligned_cols=186  Identities=26%  Similarity=0.318  Sum_probs=172.7

Q ss_pred             CCCCccCchhhhhh-----------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcc
Q psy5402           1 MTNNPTDLINEDTD-----------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVF   69 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~-----------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~   69 (198)
                      .||+|.|++++...           ....+++++.+|.++||||||+|||+|+|||++|+++||+||++++         
T Consensus        73 ~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~---------  143 (277)
T PRK08258         73 NFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPS---------  143 (277)
T ss_pred             CcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCC---------
Confidence            48999999987321           1123456788999999999999999999999999999999999999         


Q ss_pred             cceEEEecccccccccC-CchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCC
Q psy5402          70 VLQATFHTPFTLRGMTP-EGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLP  148 (198)
Q Consensus        70 ~~~a~~~~pe~~~Gi~p-~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~  148 (198)
                         ++|++||+++|++| ++|+++++++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++++..|
T Consensus       144 ---a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~  220 (277)
T PRK08258        144 ---AKTAFLFTRVGLAGADMGACALLPRIIGQGRASELLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRLAAGP  220 (277)
T ss_pred             ---CEEeccccccCcCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHHHHHhCC
Confidence               99999999999995 77889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         149 PQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       149 ~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      |.+++.+|+.++.....++++.++.|...+..++.++|+++++++|++||
T Consensus       221 ~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr  270 (277)
T PRK08258        221 TFAHGMTKTMLHQEWDMGLEEAIEAEAQAQAICMQTEDFRRAYEAFVAKR  270 (277)
T ss_pred             HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCC
Confidence            99999999999988788899999999999999999999999999999987

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=100.00  E-value=2.4e-43  Score=295.50  Aligned_cols=186  Identities=23%  Similarity=0.272  Sum_probs=171.7

Q ss_pred             CCCCccCchhhhhh--------------h----HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCc
Q psy5402           1 MTNNPTDLINEDTD--------------T----SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAI   62 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~--------------~----~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~   62 (198)
                      .||+|.|++++...              .    ...+++++..|.++||||||+|||+|+|||++|+++||+||++++  
T Consensus        64 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~--  141 (275)
T PLN02664         64 HFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSED--  141 (275)
T ss_pred             ceeeCcChHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCC--
Confidence            48999999987431              0    113356778899999999999999999999999999999999999  


Q ss_pred             ccCCCcccceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCc-hhHHHHHHHHH
Q psy5402          63 LLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTT-EEIERDLWPRI  141 (198)
Q Consensus        63 ~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~-~~l~~~a~~~a  141 (198)
                                ++|++||+++|++|++|+++++++++|..+|++++++|+.++|+||+++||||++||+ +++.+.+.+++
T Consensus       142 ----------a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a  211 (275)
T PLN02664        142 ----------AFFSVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIA  211 (275)
T ss_pred             ----------CEeccHHHhhCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHH
Confidence                      9999999999999999999999999999999999999999999999999999999995 88999999999


Q ss_pred             HHHhcCCHHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         142 HAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       142 ~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      ++++..||.+++.+|+.++.....++.+.++.|...+...+.++|++|++++|++||
T Consensus       212 ~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr  268 (275)
T PLN02664        212 EGIAAKSPLAVTGTKAVLLRSRELSVEQGLDYVATWNSAMLVSDDLNEAVSAQIQKR  268 (275)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccChhHHHHHHHHhccC
Confidence            999999999999999999988777888999999999999999999999999999987

>KOG1680|consensus

Probab=100.00  E-value=4.3e-44  Score=292.14  Aligned_cols=185  Identities=26%  Similarity=0.310  Sum_probs=175.3

Q ss_pred             CCCccCchhhhhhhH-----HHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEe
Q psy5402           2 TNNPTDLINEDTDTS-----ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFH   76 (198)
Q Consensus         2 ~s~G~Dl~~~~~~~~-----~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~   76 (198)
                      ||+|.||+++.....     ..+.+.+..+...+||+||+|||+|+|||++|+++||+|||+++            |+|+
T Consensus        94 FcsG~Dl~e~~~~~~~~~~~~~~~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~------------Akfg  161 (290)
T KOG1680|consen   94 FCSGADLKEMKKDEFQDVSDGIFLRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEG------------AKFG  161 (290)
T ss_pred             cccccCHHHHhhccccccccccccchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCC------------Ceec
Confidence            899999999977432     23455666677899999999999999999999999999999999            9999


Q ss_pred             cccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q psy5402          77 TPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAK  156 (198)
Q Consensus        77 ~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~K  156 (198)
                      +|+.++|++|.+|++.+|+|.||.++|+++++||++++|+||+++||||+|||.+++..+|.+++++|++.||.+++..|
T Consensus       162 ~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~~~~v~~~K  241 (290)
T KOG1680|consen  162 FFEIRMGIIPSWGGTQRLPRIVGKSRALEMILTGRRLGAQEAKKIGLVNKVVPSGDALGEAVKLAEQIAKNSPLVVRADK  241 (290)
T ss_pred             ccccccCCccCCCchhhHHHHhChHHHHHHHHhcCcccHHHHHhCCceeEeecchhHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         157 QLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       157 ~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +.++...+.++.+.++.|...+...|..+|.+||+.+|.+||
T Consensus       242 ~svn~~~e~~l~e~l~~e~~~~~s~~~~~d~~Eg~~~f~~kr  283 (290)
T KOG1680|consen  242 ESVNAAYETTLFEGLELERDLFGSTFATEDRLEGMTAFAEKR  283 (290)
T ss_pred             HHHHHHhhccHHHHHHhhhhhhhhhhhhHHHHHHHHHhcccC
Confidence            999999899999999999999999999999999999999987

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.8e-43  Score=291.34  Aligned_cols=186  Identities=26%  Similarity=0.343  Sum_probs=173.7

Q ss_pred             CCCCccCchhhhhh----h-------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcc
Q psy5402           1 MTNNPTDLINEDTD----T-------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVF   69 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~----~-------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~   69 (198)
                      .||+|.|++++...    .       ...+++++.++.++||||||+|||+|+|||++|+++||+||++++         
T Consensus        58 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~---------  128 (255)
T PRK07260         58 VFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTK---------  128 (255)
T ss_pred             CcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCC---------
Confidence            48999999987531    1       123466778999999999999999999999999999999999999         


Q ss_pred             cceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCH
Q psy5402          70 VLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP  149 (198)
Q Consensus        70 ~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~  149 (198)
                         ++|++||+++|++|++|+++++++++|..++++++++|++++|+||+++||||+++|++++.+.+.++++++++.||
T Consensus       129 ---a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~  205 (255)
T PRK07260        129 ---TKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGSS  205 (255)
T ss_pred             ---CEEechHhhcCCCCCCchhhhhHHhhCHHHHHHHHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHHcCCH
Confidence               99999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         150 QSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       150 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      .+++.+|+.++.....++++.++.|...+...+.++|+++++++|++||
T Consensus       206 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  254 (255)
T PRK07260        206 NSYAAIKSLVWESFFKGWEDYAKLELALQESLAFKEDFKEGVRAFSERR  254 (255)
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Confidence            9999999999998788899999999999999999999999999999987

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.6e-43  Score=292.97  Aligned_cols=186  Identities=23%  Similarity=0.305  Sum_probs=173.3

Q ss_pred             CCCCccCchhhhhh---------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccc
Q psy5402           1 MTNNPTDLINEDTD---------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVL   71 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~---------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~   71 (198)
                      .||+|.|++++...         ....+++++..|..+||||||+|||+|+|||++|+++||+||++++           
T Consensus        68 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~-----------  136 (269)
T PRK06127         68 AFVSGADISQFEESRSDAEAVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAED-----------  136 (269)
T ss_pred             ceecCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCC-----------
Confidence            38999999987431         1123456778899999999999999999999999999999999999           


Q ss_pred             eEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHH
Q psy5402          72 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQS  151 (198)
Q Consensus        72 ~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a  151 (198)
                       ++|++||+++|++|++|+++++++++|..++++++++|++++++||+++||||+|||++++.+++.+++++++..||.+
T Consensus       137 -a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a  215 (269)
T PRK06127        137 -SRFGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIAGNAPLT  215 (269)
T ss_pred             -CEeeCchhhhCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhCCHHH
Confidence             9999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         152 MIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       152 ~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      ++.+|+.++.....+++..++.|...+..++.++|.++++.+|++||
T Consensus       216 ~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr  262 (269)
T PRK06127        216 LRAAKRAIAELLKDEPERDMAACQALVAACFDSEDYREGRAAFMEKR  262 (269)
T ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCC
Confidence            99999999988777888999999999999999999999999999987

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=100.00  E-value=4.3e-43  Score=294.06  Aligned_cols=186  Identities=20%  Similarity=0.208  Sum_probs=168.4

Q ss_pred             CCCCccCchhhhhhh-----------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcc
Q psy5402           1 MTNNPTDLINEDTDT-----------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVF   69 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~-----------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~   69 (198)
                      .||+|.|++++....           ...+++++.+|.++||||||+|||+|+|||++|+++||+||++++         
T Consensus        64 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~---------  134 (275)
T PRK09120         64 AWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADE---------  134 (275)
T ss_pred             ceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCC---------
Confidence            389999999863210           113456788899999999999999999999999999999999999         


Q ss_pred             cceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCH
Q psy5402          70 VLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP  149 (198)
Q Consensus        70 ~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~  149 (198)
                         ++|++||+++|++|++|+++++++++|..++++++++|+.++|+||+++||||+|||++++++++.+++++|+..||
T Consensus       135 ---a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p  211 (275)
T PRK09120        135 ---AQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLLEKNP  211 (275)
T ss_pred             ---cEecCCccccCCCCCcchHHHHHHHcCHHHHHHHHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCH
Confidence               99999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhchhhhcHHHHHHHHHH--HHHHHhCCH-HHHHHHHHHHccC
Q psy5402         150 QSMIFAKQLVRVPMLSMLHEANKRECK--RLEERWESE-EFMNAITAFFNRK  198 (198)
Q Consensus       150 ~a~~~~K~~l~~~~~~~~~~~~~~e~~--~~~~~~~~~-~~~e~~~af~~kr  198 (198)
                      .+++.+|+.++.....++.+.++.|..  .....+.++ |+++++++|++||
T Consensus       212 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~d~~eg~~afl~kr  263 (275)
T PRK09120        212 VVLRAAKDGFKRVRELTWDQAEDYLYAKLEQANSLDPEGGREEGLKQFLDDK  263 (275)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcc
Confidence            999999999998877788888777654  345568898 8999999999987

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.8e-43  Score=292.36  Aligned_cols=186  Identities=24%  Similarity=0.394  Sum_probs=173.7

Q ss_pred             CCCCccCchhhhhh-------------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCC
Q psy5402           1 MTNNPTDLINEDTD-------------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHP   67 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~-------------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~   67 (198)
                      .||+|.|++++...             ....+++++.+|.++||||||+|||+|+|||++|+++||+||++++       
T Consensus        61 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~-------  133 (266)
T PRK05981         61 GFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARS-------  133 (266)
T ss_pred             CcccccCHHhhhcccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCC-------
Confidence            48999999986421             1123567888999999999999999999999999999999999999       


Q ss_pred             cccceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcC
Q psy5402          68 VFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL  147 (198)
Q Consensus        68 ~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~  147 (198)
                           ++|++||+++|++|++|+++++++++|+.++++++++|++++|+||+++||||+++|++++.+++.+++++++..
T Consensus       134 -----a~f~~~e~~lG~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~  208 (266)
T PRK05981        134 -----AYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHELANG  208 (266)
T ss_pred             -----CEEechHhhcCCCCCccHHHHHHHHhHHHHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcC
Confidence                 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         148 PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       148 ~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      ||.+++.+|+.++.....++.+.++.|...+...+.++|+++++.+|++||
T Consensus       209 ~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr  259 (266)
T PRK05981        209 PTVALGLIRKLYWDSPENDFEEQLNLEREAQRIAGKTEDFKEGVGAFLQKR  259 (266)
T ss_pred             CHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCC
Confidence            999999999999887777888999999999999999999999999999987

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.8e-43  Score=288.90  Aligned_cols=184  Identities=29%  Similarity=0.438  Sum_probs=170.3

Q ss_pred             CCCCccCchhhhhh------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEE
Q psy5402           1 MTNNPTDLINEDTD------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQAT   74 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~   74 (198)
                      .||+|.|++++...      ....+++++.+|.++||||||+|||+|+|||++|+++|||||++++            ++
T Consensus        62 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~------------a~  129 (251)
T PRK06023         62 CFSAGNDMQDFLAAAMGGTSFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPR------------SL  129 (251)
T ss_pred             CeecCcCHHHHhhccccchhhHHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCC------------CE
Confidence            38999999987531      1235567888999999999999999999999999999999999999            99


Q ss_pred             EecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHH
Q psy5402          75 FHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIF  154 (198)
Q Consensus        75 ~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~  154 (198)
                      |++||+++|++|++|+++++++++|..++++++++|+.++++||+++||||+++|.+++.+++.+++++|+..||.+++.
T Consensus       130 f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~  209 (251)
T PRK06023        130 FRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAKPPQALQI  209 (251)
T ss_pred             ecCcccccCCCCCchHHHHHHHHHhHHHHHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc
Q psy5402         155 AKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNR  197 (198)
Q Consensus       155 ~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~k  197 (198)
                      +|+.++... ..++..++.|.+.+...|.++|+++++++|++|
T Consensus       210 ~K~~l~~~~-~~l~~~~~~e~~~~~~~~~~~~~~e~~~af~e~  251 (251)
T PRK06023        210 ARDLMRGPR-EDILARIDEEAKHFAARLKSAEARAAFEAFMRR  251 (251)
T ss_pred             HHHHHHhch-hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcC
Confidence            999998763 467888888888899999999999999999986

>PRK08139 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=7.3e-43  Score=291.39  Aligned_cols=185  Identities=23%  Similarity=0.279  Sum_probs=170.6

Q ss_pred             CCCCccCchhhhhhh--------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccce
Q psy5402           1 MTNNPTDLINEDTDT--------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQ   72 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~--------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~   72 (198)
                      .||+|.|++++....        ...+.+++.++.++||||||+|||+|+|||++|+++||+||++++            
T Consensus        67 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~------------  134 (266)
T PRK08139         67 AFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADT------------  134 (266)
T ss_pred             cceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCC------------
Confidence            389999999874321        123456788899999999999999999999999999999999999            


Q ss_pred             EEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHH
Q psy5402          73 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSM  152 (198)
Q Consensus        73 a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~  152 (198)
                      ++|++||+++|++|+++ ++++++++|..+|++++++|++++|+||+++||||+|+|++++.+.+.+++++++..||.++
T Consensus       135 a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~  213 (266)
T PRK08139        135 ARFAVPGVNIGLFCSTP-MVALSRNVPRKQAMEMLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVIAAKSPAAV  213 (266)
T ss_pred             CEEeCcccCcCCCCCcc-HHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHHhCCHHHH
Confidence            99999999999999765 46799999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         153 IFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       153 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +.+|+.++.....++++.++.|.+.+...+.++|+++++++|++||
T Consensus       214 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr  259 (266)
T PRK08139        214 RIGKEAFYRQAEMPLADAYAYAGDVMAENMMAEDAEEGIDAFLEKR  259 (266)
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCC
Confidence            9999999988788889999999999999999999999999999986

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.7e-43  Score=289.63  Aligned_cols=186  Identities=22%  Similarity=0.334  Sum_probs=174.3

Q ss_pred             CCCCccCchhhhhh----------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCccc
Q psy5402           1 MTNNPTDLINEDTD----------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFV   70 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~----------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~   70 (198)
                      .||+|.|++++...          ....+++++..+.++||||||+|||+|+|||++|+++||+||++++          
T Consensus        59 ~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~----------  128 (260)
T PRK07511         59 FFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARD----------  128 (260)
T ss_pred             CcccCcCHHHHhhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCC----------
Confidence            48999999987431          1234567888999999999999999999999999999999999999          


Q ss_pred             ceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHH
Q psy5402          71 LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQ  150 (198)
Q Consensus        71 ~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~  150 (198)
                        ++|++||+++|++|++|+++++++++|.+++++++++|++++++||+++||||+++|++++.+++.++++++++.||.
T Consensus       129 --a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~  206 (260)
T PRK07511        129 --AKFVMAYVKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLAAGSPN  206 (260)
T ss_pred             --CEEeccccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHH
Confidence              999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         151 SMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       151 a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      ++..+|+.++.....++.+.++.|...+..++.+++.++++++|++||
T Consensus       207 ~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~~~r  254 (260)
T PRK07511        207 ALARIKSLIADAPEATLAAQLEAERDHFVASLHHADALEGIAAFLEKR  254 (260)
T ss_pred             HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhccC
Confidence            999999999988777889999999999999999999999999999986

>PLN02888 enoyl-CoA hydratase

Probab=100.00  E-value=9e-43  Score=290.68  Aligned_cols=186  Identities=23%  Similarity=0.236  Sum_probs=170.8

Q ss_pred             CCCCccCchhhhhh----hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEe
Q psy5402           1 MTNNPTDLINEDTD----TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFH   76 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~----~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~   76 (198)
                      .||+|.|++++...    ......+++..|..+||||||+|||+|+|||++|+++||+||++++            ++|+
T Consensus        66 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~------------a~f~  133 (265)
T PLN02888         66 AFCSGVDLTAAEEVFKGDVKDVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRG------------AKFI  133 (265)
T ss_pred             cccCCCCHHHHHhhccchhhHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCC------------CEec
Confidence            48999999986431    1123356778899999999999999999999999999999999999            9999


Q ss_pred             cccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q psy5402          77 TPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAK  156 (198)
Q Consensus        77 ~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~K  156 (198)
                      +||+++|++|++|+++++++++|+.+|++++++|++++|+||+++||||++||++++.+++.+++++++..+|.+++.+|
T Consensus       134 ~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  213 (265)
T PLN02888        134 DTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNNQGMVLRYK  213 (265)
T ss_pred             CccccccCCCCccHhhHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhchhhhcHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHccC
Q psy5402         157 QLVRVPMLSMLHEANKRECKRLEERW--ESEEFMNAITAFFNRK  198 (198)
Q Consensus       157 ~~l~~~~~~~~~~~~~~e~~~~~~~~--~~~~~~e~~~af~~kr  198 (198)
                      +.++.....++++.++.|...+..+|  .++|+++++++|++||
T Consensus       214 ~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~e~~~af~ekr  257 (265)
T PLN02888        214 SVINDGLKLDLGHALQLEKERAHDYYNGMTKEQFQKMQEFIAGR  257 (265)
T ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcC
Confidence            99998877788888888888888876  5999999999999987

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-42  Score=289.12  Aligned_cols=186  Identities=29%  Similarity=0.530  Sum_probs=175.2

Q ss_pred             CCCCccCchhhhhh------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEE
Q psy5402           1 MTNNPTDLINEDTD------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQAT   74 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~   74 (198)
                      .||+|.|++++...      ....+++++.++.++||||||+|||+|+|||++|+++||+||++++            ++
T Consensus        61 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~------------a~  128 (259)
T PRK06688         61 AFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASES------------AK  128 (259)
T ss_pred             CccCccCHHHHhccCcchHHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCC------------CE
Confidence            38999999987532      2335677889999999999999999999999999999999999999            99


Q ss_pred             EecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHH
Q psy5402          75 FHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIF  154 (198)
Q Consensus        75 ~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~  154 (198)
                      |++||+++|++|++|+++++++++|..+|++++++|++++++||+++||||+++|++++.+++.++++++++.||.+++.
T Consensus       129 f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~~~~~~a~~~  208 (259)
T PRK06688        129 FSLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGPASALRY  208 (259)
T ss_pred             ecCchhhcCCCCCcchhhHHHHHhhHHHHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         155 AKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       155 ~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +|+.++.....++++.++.|.+.+..++.+++.++++++|++||
T Consensus       209 ~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~af~~~~  252 (259)
T PRK06688        209 TKRAINAATLTELEEALAREAAGFGRLLRTPDFREGATAFIEKR  252 (259)
T ss_pred             HHHHHHhhhhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence            99999988788899999999999999999999999999999986

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=100.00  E-value=8.5e-43  Score=287.33  Aligned_cols=185  Identities=30%  Similarity=0.428  Sum_probs=175.5

Q ss_pred             CCCCccCchhhhhh-------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceE
Q psy5402           1 MTNNPTDLINEDTD-------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA   73 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~-------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a   73 (198)
                      .||+|.|++++...       ....+++++.++..+||||||+|||+|+|||++++++||+||++++            +
T Consensus        54 ~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~------------a  121 (245)
T PF00378_consen   54 AFCAGADLKEFLNSDEEEAREFFRRFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAED------------A  121 (245)
T ss_dssp             ESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETT------------T
T ss_pred             ccccccchhhhhccccccccccchhhccccccchhhhhheeecccccccccccccccccceEEeecc------------c
Confidence            38999999988655       2346778899999999999999999999999999999999999999            9


Q ss_pred             EEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHH
Q psy5402          74 TFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMI  153 (198)
Q Consensus        74 ~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~  153 (198)
                      +|++||+++|++|++|+++++++++|.+++++++++|++++|+||+++||||+++|++++.+.+.+++++++..|+.+++
T Consensus       122 ~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~  201 (245)
T PF00378_consen  122 KFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLTGEPISAEEALELGLVDEVVPDEELDEEALELAKRLAAKPPSALR  201 (245)
T ss_dssp             EEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHHTCEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSCHHHHH
T ss_pred             ceeeeecccCcccccccccccceeeecccccccccccccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHhcCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc
Q psy5402         154 FAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNR  197 (198)
Q Consensus       154 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~k  197 (198)
                      .+|+.++......+++..+.+...+..++.++|++|++++|+||
T Consensus       202 ~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~eK  245 (245)
T PF00378_consen  202 ATKKALNRALEQSLEEALEFEQDLFAECFKSEDFQEGIAAFLEK  245 (245)
T ss_dssp             HHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCc
Confidence            99999999888888999999999999999999999999999998

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-42  Score=289.37  Aligned_cols=185  Identities=25%  Similarity=0.390  Sum_probs=168.7

Q ss_pred             CCCCccCchhhhhh---h-------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCccc
Q psy5402           1 MTNNPTDLINEDTD---T-------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFV   70 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~---~-------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~   70 (198)
                      .||+|.|++++...   .       ...+.+++..|..+||||||+|||+|+|||++|+++||+||++++          
T Consensus        61 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~----------  130 (262)
T PRK07468         61 SFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSG----------  130 (262)
T ss_pred             cccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCC----------
Confidence            38999999986421   0       123456788999999999999999999999999999999999999          


Q ss_pred             ceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHH
Q psy5402          71 LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQ  150 (198)
Q Consensus        71 ~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~  150 (198)
                        ++|++||+++|++|++|+++++ +++|..++++++++|++++++||+++||||+++|++++.+.+.++++++++.||.
T Consensus       131 --a~f~~pe~~~Gl~p~~g~~~~~-~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~  207 (262)
T PRK07468        131 --ARFGLTETRLGLIPATISPYVV-ARMGEANARRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPYLSCAPG  207 (262)
T ss_pred             --CEEeCchhccCCCcccchhhHH-hhccHHHHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCHH
Confidence              9999999999999999888755 5599999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         151 SMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       151 a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +++.+|+.++......++..++.|...+...+.++|+++++++|++||
T Consensus       208 a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr  255 (262)
T PRK07468        208 AVAAAKALVRALGAPIDEAVIDATIEALADTWETEEAREGIAAFFDKR  255 (262)
T ss_pred             HHHHHHHHHHhhhccChHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCC
Confidence            999999999887666678888999999999999999999999999987

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-42  Score=289.46  Aligned_cols=185  Identities=23%  Similarity=0.354  Sum_probs=172.7

Q ss_pred             CCCCccCchhhhhhh--------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccce
Q psy5402           1 MTNNPTDLINEDTDT--------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQ   72 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~--------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~   72 (198)
                      .||+|.|++++....        ...+++++.++..+||||||+|||+|+|||++|+++||+||++++            
T Consensus        61 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~------------  128 (260)
T PRK07659         61 GFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADIS------------  128 (260)
T ss_pred             CcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCC------------
Confidence            389999999874321        224567788899999999999999999999999999999999999            


Q ss_pred             EEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHH
Q psy5402          73 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSM  152 (198)
Q Consensus        73 a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~  152 (198)
                      ++|++||+++|++|++|++++|++++|+.+|++++++|+.++|+||+++||||+++ ++++.+++.++++++++.||.++
T Consensus       129 a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l~~~~~~a~  207 (260)
T PRK07659        129 AKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKISEWLQKPLKAM  207 (260)
T ss_pred             CEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHHHHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHHHhCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999 78899999999999999999999


Q ss_pred             HHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         153 IFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       153 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +.+|+.++.....++++.++.|.+.+...+.++|+++++.+|++||
T Consensus       208 ~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr  253 (260)
T PRK07659        208 IETKQIYCELNRSQLEQVLQLEKRAQYAMRQTADHKEGIRAFLEKR  253 (260)
T ss_pred             HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCC
Confidence            9999999988788899999999999999999999999999999987

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-42  Score=289.09  Aligned_cols=185  Identities=26%  Similarity=0.341  Sum_probs=167.7

Q ss_pred             CCCCccCchhhhhhh-----HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEE
Q psy5402           1 MTNNPTDLINEDTDT-----SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATF   75 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~-----~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~   75 (198)
                      .||+|.|++++....     ...+..+ ..+.++||||||+|||+|+|||++|+++||+||++++            ++|
T Consensus        61 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~------------a~f  127 (259)
T PRK06494         61 AFSAGNDLKEQAAGGKRGWPESGFGGL-TSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAEN------------ATF  127 (259)
T ss_pred             ceeccccHHhHhhcCcchhhhHHHHHH-HHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCC------------CEE
Confidence            489999999875321     1233333 3456899999999999999999999999999999999            999


Q ss_pred             ecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHH
Q psy5402          76 HTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFA  155 (198)
Q Consensus        76 ~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~  155 (198)
                      ++||+++|++|++|+++++++++|+.+|++++++|+.++|+||+++||||+++|++++.+++.+++++++..||.+++.+
T Consensus       128 ~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~  207 (259)
T PRK06494        128 ALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILACSPLSIRAS  207 (259)
T ss_pred             eCcccccCCCCCchHHHHHHHHcCHHHHHHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhchhhhcHHHHHHHH--HHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         156 KQLVRVPMLSMLHEANKRE--CKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       156 K~~l~~~~~~~~~~~~~~e--~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      |+.++.....++++.++.|  ...+..++.++|+++++.+|++||
T Consensus       208 K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~~kr  252 (259)
T PRK06494        208 KQAVYRGLEVSLEEAITAQRDYPAVEARRASQDYIEGPKAFAEKR  252 (259)
T ss_pred             HHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHccC
Confidence            9999987777888888888  456788999999999999999986

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.8e-42  Score=288.35  Aligned_cols=185  Identities=26%  Similarity=0.320  Sum_probs=169.0

Q ss_pred             CCCCccCchhhhhh-------h---HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCccc
Q psy5402           1 MTNNPTDLINEDTD-------T---SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFV   70 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~-------~---~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~   70 (198)
                      .||+|.|++++...       .   ...+++++.+|.++||||||+|||+|+|||++|+++||+||++++          
T Consensus        60 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~----------  129 (262)
T PRK05995         60 AFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADH----------  129 (262)
T ss_pred             ccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCC----------
Confidence            38999999986421       0   124567888999999999999999999999999999999999999          


Q ss_pred             ceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHH
Q psy5402          71 LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQ  150 (198)
Q Consensus        71 ~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~  150 (198)
                        ++|++||+++|++|++|++ ++++++|..+|++++++|++++|+||+++||||+|+|++++.+++.++++++++.||.
T Consensus       130 --a~f~~pe~~~Gl~p~~g~~-~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~  206 (262)
T PRK05995        130 --AVFCLSEVRLGLIPATISP-YVIRAMGERAARRYFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVANSPQ  206 (262)
T ss_pred             --CEEeCcccccccCccchHH-HHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHH
Confidence              9999999999999988766 4889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhchhhhcHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         151 SMIFAKQLVRVPMLSMLHEA-NKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       151 a~~~~K~~l~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +++.+|+.++.....++.+. ++.|...+...+.++|+++++.+|++||
T Consensus       207 a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~~kr  255 (262)
T PRK05995        207 AVRAGKRLVRDVAGRPIDAALIADTASRIALIRATEEAREGVAAFLEKR  255 (262)
T ss_pred             HHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCHHHHHHHHHHhcCC
Confidence            99999999998767777777 7888888999999999999999999987

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=100.00  E-value=1.4e-42  Score=288.94  Aligned_cols=186  Identities=23%  Similarity=0.313  Sum_probs=169.2

Q ss_pred             CCCCccCchhhhhhh---H---HHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEE
Q psy5402           1 MTNNPTDLINEDTDT---S---ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQAT   74 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~---~---~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~   74 (198)
                      .||+|.|++++....   .   ......+.++.++||||||+|||+|+|||++|+++||+||++++            ++
T Consensus        59 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~------------a~  126 (261)
T PRK03580         59 FFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADN------------AS  126 (261)
T ss_pred             ceecccCHHHHhccCcchhhhhhhhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCC------------CE
Confidence            489999999875321   1   11234577899999999999999999999999999999999999            99


Q ss_pred             EecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHH
Q psy5402          75 FHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIF  154 (198)
Q Consensus        75 ~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~  154 (198)
                      |++||+++|++|++|+++++++++|+.++++++++|+.++|+||+++||||+++|++++.+++.+++++++..||.+++.
T Consensus       127 f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~  206 (261)
T PRK03580        127 FALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLVNSAPLAIAA  206 (261)
T ss_pred             EeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhchhhhcHHHHHHHHH----HHHHHHhCCHHHHHHHHHHHccC
Q psy5402         155 AKQLVRVPMLSMLHEANKREC----KRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       155 ~K~~l~~~~~~~~~~~~~~e~----~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +|+.++.....++++.++.|.    ..+..++.++|+++++++|++||
T Consensus       207 ~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~ekr  254 (261)
T PRK03580        207 LKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFAEKR  254 (261)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHhcCC
Confidence            999999887777888887775    36778999999999999999987

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=100.00  E-value=1.2e-42  Score=289.10  Aligned_cols=185  Identities=21%  Similarity=0.270  Sum_probs=165.9

Q ss_pred             CCCCccCchhhhhh----h----HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccce
Q psy5402           1 MTNNPTDLINEDTD----T----SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQ   72 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~----~----~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~   72 (198)
                      .||+|.|++++...    .    ...+.+++..+.++||||||+|||+|+|||++|+++||+||++++            
T Consensus        60 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~------------  127 (259)
T TIGR01929        60 AFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAEN------------  127 (259)
T ss_pred             ceEeCcChHhHhhccccchhhHHHHHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCC------------
Confidence            48999999876321    0    112456788899999999999999999999999999999999999            


Q ss_pred             EEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHH
Q psy5402          73 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSM  152 (198)
Q Consensus        73 a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~  152 (198)
                      ++|++||+++|++|++|+++++++++|+.+|++++++|++++|+||+++||||+|+|++++.+++.+++++++..||.++
T Consensus       128 a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~  207 (259)
T TIGR01929       128 ARFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWCREILQKSPMAI  207 (259)
T ss_pred             CEecCcccccccCCCccHHHHHHHHhHHHHHHHHHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHHHhCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         153 IFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       153 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +.+|+.++..... .....+.|...+...+.++|+++++++|++||
T Consensus       208 ~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr  252 (259)
T TIGR01929       208 RMLKAALNADCDG-QAGLQELAGNATMLFYMTEEGQEGRNAFLEKR  252 (259)
T ss_pred             HHHHHHHHhhhcc-chHHHHHHHHHHHHHhcCccHHHHHHHHhccC
Confidence            9999999876443 34455566778889999999999999999987

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.4e-42  Score=289.21  Aligned_cols=185  Identities=24%  Similarity=0.216  Sum_probs=169.4

Q ss_pred             CCCCccCchhhhhhh-----H------HHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcc
Q psy5402           1 MTNNPTDLINEDTDT-----S------ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVF   69 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~-----~------~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~   69 (198)
                      .||+|.|++++....     .      ..+.. +.++..+||||||+|||+|+|||++|+++||+||++++         
T Consensus        61 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~---------  130 (263)
T PRK07799         61 AFCAGMDLKAATKKPPGDSFKDGSYDPSRIDA-LLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGES---------  130 (263)
T ss_pred             ccccccCHHHHhhccccchhhhhhhhhhHHHH-HHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCC---------
Confidence            489999999875321     0      01222 33567899999999999999999999999999999999         


Q ss_pred             cceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCH
Q psy5402          70 VLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP  149 (198)
Q Consensus        70 ~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~  149 (198)
                         ++|++||+++|++|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.++++++++.||
T Consensus       131 ---a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~  207 (263)
T PRK07799        131 ---AKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELINANGP  207 (263)
T ss_pred             ---CEecCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHHHhcCh
Confidence               99999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         150 QSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       150 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      .+++.+|+.++.....++.+.++.|.+.+..++.++++++++++|++||
T Consensus       208 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~~r  256 (263)
T PRK07799        208 LAVQAILRTIRETEGMHENEAFKIDTKIGIPVFLSEDAKEGPRAFAEKR  256 (263)
T ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHccC
Confidence            9999999999988777889999999999999999999999999999986

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2e-42  Score=286.93  Aligned_cols=184  Identities=22%  Similarity=0.210  Sum_probs=167.8

Q ss_pred             CCCCccCchhhhhhh-HH----HHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEE
Q psy5402           1 MTNNPTDLINEDTDT-SI----TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATF   75 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~-~~----~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~   75 (198)
                      .||+|.|++++.... ..    .+..++  ...+||||||+|||+|+|||++|+++||+||++++            ++|
T Consensus        59 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~------------a~f  124 (254)
T PRK08252         59 TFCAGMDLKAFARGERPSIPGRGFGGLT--ERPPRKPLIAAVEGYALAGGFELALACDLIVAARD------------AKF  124 (254)
T ss_pred             ceEcCcCHHHHhcccchhhhHHHHHHHH--HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCC------------CEE
Confidence            489999999875421 11    122222  14799999999999999999999999999999999            999


Q ss_pred             ecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHH
Q psy5402          76 HTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFA  155 (198)
Q Consensus        76 ~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~  155 (198)
                      ++||+++|++|++|++++|++++|..+|++++++|++++++||+++||||+|+|++++.+++.+++++++..||.+++.+
T Consensus       125 ~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~  204 (254)
T PRK08252        125 GLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERIAANGPLAVAAS  204 (254)
T ss_pred             eCchhhcCCCCCchHHHHHHHHcCHHHHHHHHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         156 KQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       156 K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      |+.++.....++++.++.|...+..++.++|+++++.+|++||
T Consensus       205 K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr  247 (254)
T PRK08252        205 KRIVVESGDWSEDEMFARQRELIAPVFTSADAKEGATAFAEKR  247 (254)
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCC
Confidence            9999987777888999999999999999999999999999986

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=100.00  E-value=1.8e-42  Score=290.59  Aligned_cols=185  Identities=16%  Similarity=0.217  Sum_probs=170.6

Q ss_pred             CCCCccCchhhhhh--h---HH----HHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccc
Q psy5402           1 MTNNPTDLINEDTD--T---SI----TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVL   71 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~--~---~~----~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~   71 (198)
                      .||+|.|++++...  .   ..    .+++++.+|.++||||||+|||+|+|||++|+++|||||++++           
T Consensus        69 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~-----------  137 (278)
T PLN03214         69 VFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTE-----------  137 (278)
T ss_pred             cccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCC-----------
Confidence            48999999986421  1   11    2245678899999999999999999999999999999999999           


Q ss_pred             eEEEecccccccc-cCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHH
Q psy5402          72 QATFHTPFTLRGM-TPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQ  150 (198)
Q Consensus        72 ~a~~~~pe~~~Gi-~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~  150 (198)
                       ++|++||+++|+ +|++++++++++++|+.++++++++|+.|+++||+++||||+|+|.+++.+.+.+++++++..||.
T Consensus       138 -a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~  216 (278)
T PLN03214        138 -GTMGLNEVALGIPVPKFWARLFMGRVIDRKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERALKLPSA  216 (278)
T ss_pred             -CEecCcHHHhCCCCCChhHHHHHHHhcCHHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHcCCHH
Confidence             999999999999 588899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc
Q psy5402         151 SMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNR  197 (198)
Q Consensus       151 a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~k  197 (198)
                      +++.+|+.++.....++++.++.|...+...+.++|+++++.+|++|
T Consensus       217 a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~aflek  263 (278)
T PLN03214        217 ARAATKALLREEFSAAWEAYYEEEAKGGWKMLSEPSIIKALGGVMER  263 (278)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            99999999998878888999999999999999999999999999986

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2e-42  Score=289.40  Aligned_cols=186  Identities=28%  Similarity=0.435  Sum_probs=171.7

Q ss_pred             CCCCccCchhhhhhhH-----------------HHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcc
Q psy5402           1 MTNNPTDLINEDTDTS-----------------ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAIL   63 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~~-----------------~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~   63 (198)
                      .||+|.|++++.....                 ..+++++.+|.++||||||+|||+|+|||++|+++||+||++++   
T Consensus        62 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~---  138 (272)
T PRK06210         62 GFCAGADMGELQTIDPSDGRRDTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADG---  138 (272)
T ss_pred             CcccccCHHHHhccCcccccccccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCC---
Confidence            4899999998643110                 12345678899999999999999999999999999999999999   


Q ss_pred             cCCCcccceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHH
Q psy5402          64 LNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHA  143 (198)
Q Consensus        64 ~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~  143 (198)
                               ++|++||+++|++|++|+++++++++|+.++++++++|+.++|+||+++||||+++|++++.+++.+++++
T Consensus       139 ---------a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~  209 (272)
T PRK06210        139 ---------AKFTTAFARRGLIAEHGISWILPRLVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAED  209 (272)
T ss_pred             ---------CEEechHHhcCCCCCCchhhhhHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHH
Confidence                     99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcC-CHHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         144 WAKL-PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       144 la~~-~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      ++.. +|.++..+|+.++.....++++.++.|...+...+.++++++++++|++||
T Consensus       210 i~~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr  265 (272)
T PRK06210        210 LARNVSPASMAVIKRQLYEDAFQTLAEATARANREMHESLQRPDFIEGVASFLEKR  265 (272)
T ss_pred             HHhcCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccC
Confidence            9985 999999999999988778889999999999999999999999999999987

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=100.00  E-value=2.2e-42  Score=287.71  Aligned_cols=186  Identities=22%  Similarity=0.324  Sum_probs=169.4

Q ss_pred             CCCCccCchhhhhh------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEE
Q psy5402           1 MTNNPTDLINEDTD------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQAT   74 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~   74 (198)
                      .||+|.|++++...      ....+++++..+..+||||||+|||+|+|||++|+++||+||++++            ++
T Consensus        61 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~------------a~  128 (261)
T PRK11423         61 VWSAGHDIHELPSGGRDPLSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAAST------------ST  128 (261)
T ss_pred             eeECCcCHHHHhhccccHHHHHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCC------------CE
Confidence            38999999987421      1234567889999999999999999999999999999999999999            99


Q ss_pred             EecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHH
Q psy5402          75 FHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIF  154 (198)
Q Consensus        75 ~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~  154 (198)
                      |++||+++|++|++|+++++++++|+.++++++++|++++|+||+++||||+|||++++++.+.++++++++.||.+++.
T Consensus       129 f~~pe~~~Gl~~~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~  208 (261)
T PRK11423        129 FAMTPANLGVPYNLSGILNFTNDAGFHIVKEMFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAV  208 (261)
T ss_pred             ecCchhhcCCCCCccHHHHHHHHhHHHHHHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhchhh-hcH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         155 AKQLVRVPML-SML-HEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       155 ~K~~l~~~~~-~~~-~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +|+.++.... ..+ ....+.|...+..++.++|.++++.+|++||
T Consensus       209 ~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~eg~~af~~kr  254 (261)
T PRK11423        209 IKEQLRVLGEAHPMNPDEFERIQGLRRAVYDSEDYQEGMNAFLEKR  254 (261)
T ss_pred             HHHHHHhhcccCCcchHHHHHHHHHHHHHhCChhHHHHHHHHhccC
Confidence            9999986533 333 4677778888899999999999999999987

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=100.00  E-value=3.1e-42  Score=286.08  Aligned_cols=185  Identities=24%  Similarity=0.358  Sum_probs=163.2

Q ss_pred             CCCCccCchhhhhh------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEE
Q psy5402           1 MTNNPTDLINEDTD------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQAT   74 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~   74 (198)
                      .||+|.|++++...      ....+++++.+|.++||||||+|||+|+|||++|+++||+||++++            ++
T Consensus        59 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~------------a~  126 (256)
T TIGR03210        59 AFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEK------------AQ  126 (256)
T ss_pred             ceecCcChHHHhccccchhHHHHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCC------------CE
Confidence            48999999987421      1123467888999999999999999999999999999999999999            99


Q ss_pred             EecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHH
Q psy5402          75 FHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIF  154 (198)
Q Consensus        75 ~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~  154 (198)
                      |++||+++|++|++++++++++++|..+|++++++|++++|+||+++||||+++|++++.+++.++++++++.||.+++.
T Consensus       127 f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~  206 (256)
T TIGR03210       127 FGQVGPKVGSVDPGYGTALLARVVGEKKAREIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKSPTAIAI  206 (256)
T ss_pred             EecccccccccCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            99999999999888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         155 AKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       155 ~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +|+.++........ ....|...+...+.++|+++++.+|++||
T Consensus       207 ~K~~l~~~~~~~~~-~~~~~~~~~~~~~~~~d~~e~~~af~~kr  249 (256)
T TIGR03210       207 AKRSFNMDTAHQRG-IAGMGMYALKLYYDTAESREGVKAFQEKR  249 (256)
T ss_pred             HHHHHHHhhcccch-HHHHHHHHHHHHccChhHHHHHHHHhccC
Confidence            99999876432111 11234567788899999999999999987

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=100.00  E-value=3.1e-42  Score=287.42  Aligned_cols=185  Identities=20%  Similarity=0.277  Sum_probs=166.6

Q ss_pred             CCCCccCchhhhhh-------h---HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCccc
Q psy5402           1 MTNNPTDLINEDTD-------T---SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFV   70 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~-------~---~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~   70 (198)
                      .||+|.|++++...       .   ...+.+++..+.++||||||+|||+|+|||++|+++||+||++++          
T Consensus        62 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~----------  131 (265)
T PRK05674         62 HFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADD----------  131 (265)
T ss_pred             CcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCC----------
Confidence            48999999986421       0   123467888899999999999999999999999999999999999          


Q ss_pred             ceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHH
Q psy5402          71 LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQ  150 (198)
Q Consensus        71 ~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~  150 (198)
                        ++|++||+++|++|+++++ .+++++|.+++++++++|+.++|+||+++||||+|+|++++.+++.+++++++..||.
T Consensus       132 --a~f~~pe~~~Gi~p~~~~~-~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~  208 (265)
T PRK05674        132 --AQFCLSEVRIGLAPAVISP-FVVKAIGERAARRYALTAERFDGRRARELGLLAESYPAAELEAQVEAWIANLLLNSPQ  208 (265)
T ss_pred             --CEEeCcccccCCCcchhHH-HHHHHhCHHHHHHHHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhcCHH
Confidence              9999999999999987766 5889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhchhhhcHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         151 SMIFAKQLVRVPMLSMLHEANKR-ECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       151 a~~~~K~~l~~~~~~~~~~~~~~-e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +++.+|+.++.....++++.++. +...+...+.++|.++++++|++||
T Consensus       209 a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~e~~~af~~kr  257 (265)
T PRK05674        209 ALRASKDLLREVGDGELSPALRRYCENAIARIRVSAEGQEGLRAFLEKR  257 (265)
T ss_pred             HHHHHHHHHHHhhccChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHccC
Confidence            99999999998877777776654 4467788899999999999999986

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.6e-42  Score=284.69  Aligned_cols=183  Identities=19%  Similarity=0.170  Sum_probs=167.7

Q ss_pred             CCCCccCchhhhhhh--------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccce
Q psy5402           1 MTNNPTDLINEDTDT--------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQ   72 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~--------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~   72 (198)
                      .||+|.|++++....        ...+.+++..|.++||||||+|||+|+|||++|+++||+||++++            
T Consensus        57 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~------------  124 (249)
T PRK07938         57 GFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDD------------  124 (249)
T ss_pred             ceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCC------------
Confidence            489999999864321        123456788899999999999999999999999999999999999            


Q ss_pred             EEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHH
Q psy5402          73 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSM  152 (198)
Q Consensus        73 a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~  152 (198)
                      ++|++||+++|++   |+++++++++|+.++++++++|+.++|+||+++||||++||++++.+++.+++++++..||.++
T Consensus       125 a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~  201 (249)
T PRK07938        125 ATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTAATITAAELHHFGSVEEVVPRDQLDEAALEVARKIAAKDTRVI  201 (249)
T ss_pred             CEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHhCCcCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHHH
Confidence            9999999999996   4556899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         153 IFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       153 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +.+|+.++.....++++.++.|...+...+.++|++|++++|++||
T Consensus       202 ~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr  247 (249)
T PRK07938        202 RAAKEALNGIDPQDVERSYRWEQGFTFELNLAGVSDEHRDAFVEKR  247 (249)
T ss_pred             HHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcC
Confidence            9999999987777788888999989999999999999999999997

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.9e-42  Score=285.25  Aligned_cols=185  Identities=21%  Similarity=0.179  Sum_probs=165.9

Q ss_pred             CCCCccCchhhhhhhHHH-----HHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEE
Q psy5402           1 MTNNPTDLINEDTDTSIT-----LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATF   75 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~~~~-----~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~   75 (198)
                      .||+|.|++++.......     ...+...+..+||||||+|||+|+|||++|+++||+||++++            ++|
T Consensus        59 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~------------a~f  126 (254)
T PRK08259         59 TFCAGADLKAVGTGRGNRLHPSGDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEED------------AVF  126 (254)
T ss_pred             CccCCcChHHHhcccchhhhhhhcchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCC------------CEe
Confidence            489999999875321111     112223345799999999999999999999999999999999            999


Q ss_pred             ecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHH
Q psy5402          76 HTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFA  155 (198)
Q Consensus        76 ~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~  155 (198)
                      ++||+++|++|.+|+++++++++|..++++++++|+.|+|+||+++||||+|||++++.+++.+++++|++.||.+++.+
T Consensus       127 ~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~  206 (254)
T PRK08259        127 GVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELAAFPQTCLRAD  206 (254)
T ss_pred             cCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         156 KQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       156 K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      |+.++.....++++.++.|...+...+. +|++|++.+|++||
T Consensus       207 K~~~~~~~~~~~~~~~~~e~~~~~~~~~-~d~~egi~af~~~~  248 (254)
T PRK08259        207 RLSALEQWGLPEEAALANEFAHGLAVLA-AEALEGAARFAAGA  248 (254)
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhh
Confidence            9999987777888888888887777777 99999999999986

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3e-42  Score=285.16  Aligned_cols=183  Identities=22%  Similarity=0.235  Sum_probs=169.6

Q ss_pred             CCCCccCchhhhhh-------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceE
Q psy5402           1 MTNNPTDLINEDTD-------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA   73 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~-------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a   73 (198)
                      .||+|.|++++...       ....+.+++..+.++||||||+|||+|+|||++|+++||+||++++            +
T Consensus        59 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~------------a  126 (249)
T PRK05870         59 AFCAGADLTALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPK------------A  126 (249)
T ss_pred             CeecCcChHHHhcccccchHHHHHHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCC------------C
Confidence            48999999987532       1223455677899999999999999999999999999999999999            9


Q ss_pred             EEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHH
Q psy5402          74 TFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMI  153 (198)
Q Consensus        74 ~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~  153 (198)
                      +|++||+++|++|++|+++++++++|+.++++++++|++++|+||+++||||+++  +++.+++.+++++++..||.+++
T Consensus       127 ~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a~~la~~~~~a~~  204 (249)
T PRK05870        127 LFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLALMVA--DDPVAAALELAAGPAAAPRELVL  204 (249)
T ss_pred             EEeCcccccCcCCCCcceeeHHhhhCHHHHHHHHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHHHHHHhCCHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999  67999999999999999999999


Q ss_pred             HHHHHhhchhh-hcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc
Q psy5402         154 FAKQLVRVPML-SMLHEANKRECKRLEERWESEEFMNAITAFFNR  197 (198)
Q Consensus       154 ~~K~~l~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~k  197 (198)
                      .+|+.++.... .++++.++.|...+...+.++|+++++.+|+++
T Consensus       205 ~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~~  249 (249)
T PRK05870        205 ATKASMRATASLAQHAAAVEFELGPQAASVQSPEFAARLAAAQRR  249 (249)
T ss_pred             HHHHHHHhccccCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcC
Confidence            99999998876 788899999999999999999999999999985

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=100.00  E-value=6.4e-42  Score=286.65  Aligned_cols=185  Identities=22%  Similarity=0.240  Sum_probs=166.0

Q ss_pred             CCCCccCchhhhhhh------HH--HHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccce
Q psy5402           1 MTNNPTDLINEDTDT------SI--TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQ   72 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~------~~--~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~   72 (198)
                      .||+|.|++++....      ..  ...+++..+.++||||||+|||+|+|||++|+++||+||++++            
T Consensus        70 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~------------  137 (273)
T PRK07396         70 AFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADN------------  137 (273)
T ss_pred             ceEeCcChhhhhcccccchhhhhhhHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCC------------
Confidence            489999999864210      11  2235677899999999999999999999999999999999999            


Q ss_pred             EEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHH
Q psy5402          73 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSM  152 (198)
Q Consensus        73 a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~  152 (198)
                      ++|++||+++|++|+++++.++++++|..++++++++|+.++|+||+++||||+|||++++.+++.+++++++..||.++
T Consensus       138 a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~  217 (273)
T PRK07396        138 AIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREMLQNSPMAL  217 (273)
T ss_pred             cEEecccccccccCCchHHHHHHHHhhHHHHHHHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHH
Confidence            99999999999999999899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         153 IFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       153 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +.+|+.++.... ..+...+.|...+...+.++|+++++.+|++||
T Consensus       218 ~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr  262 (273)
T PRK07396        218 RCLKAALNADCD-GQAGLQELAGNATMLFYMTEEAQEGRNAFNEKR  262 (273)
T ss_pred             HHHHHHHHhhhc-cHHHHHHHHHHHHHHHhcChhHHHHHHHHhCCC
Confidence            999999987643 345555567778888999999999999999986

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.3e-42  Score=285.27  Aligned_cols=182  Identities=16%  Similarity=0.208  Sum_probs=160.5

Q ss_pred             CCCCccCchhhhhh---------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccc
Q psy5402           1 MTNNPTDLINEDTD---------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVL   71 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~---------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~   71 (198)
                      .||+|.|++++...         ....+.+++..+.++||||||+|||+|+|||++|+++||+||++++           
T Consensus        68 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-----------  136 (268)
T PRK07327         68 AFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKD-----------  136 (268)
T ss_pred             CcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCC-----------
Confidence            48999999876421         1123456788899999999999999999999999999999999999           


Q ss_pred             eEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHH
Q psy5402          72 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQS  151 (198)
Q Consensus        72 ~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a  151 (198)
                       ++|++||+++|++|++|+++++++++|..+|++++++|++++|+||+++||||+++|++++.+++.++++++++.||.+
T Consensus       137 -a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a  215 (268)
T PRK07327        137 -ARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAGSQTA  215 (268)
T ss_pred             -CEEeCcccccCCCCCcchhhHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCCHHH
Confidence             9999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhchhhh---cHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         152 MIFAKQLVRVPMLS---MLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       152 ~~~~K~~l~~~~~~---~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      ++.+|+.++.....   .++..+..+    ...+.++|+++++.+|++||
T Consensus       216 ~~~~K~~l~~~~~~~~~~~~~~~~~~----~~~~~~~d~~eg~~af~ekr  261 (268)
T PRK07327        216 IRWTKYALNNWLRMAGPTFDTSLALE----FMGFSGPDVREGLASLREKR  261 (268)
T ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHH----HHHccChhHHHHHHHHHhcC
Confidence            99999999865221   233333332    35788999999999999987

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.9e-42  Score=284.89  Aligned_cols=182  Identities=21%  Similarity=0.287  Sum_probs=164.8

Q ss_pred             CCCCccCchhhhhhh--------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccce
Q psy5402           1 MTNNPTDLINEDTDT--------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQ   72 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~--------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~   72 (198)
                      .||+|.|++++....        ...+++++.++.++||||||+|||+|+|||++|+++||+||++++            
T Consensus        65 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~------------  132 (262)
T PRK06144         65 AFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPS------------  132 (262)
T ss_pred             ceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCC------------
Confidence            389999999875321        123566788899999999999999999999999999999999999            


Q ss_pred             EEEeccccc-ccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHH
Q psy5402          73 ATFHTPFTL-RGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQS  151 (198)
Q Consensus        73 a~~~~pe~~-~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a  151 (198)
                      ++|++||++ +|++|++|+++++++++|..+|++++++|++++|+||+++||||+|+|++++.+++.++++++++.||.+
T Consensus       133 a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a  212 (262)
T PRK06144        133 ARFGFPIARTLGNCLSMSNLARLVALLGAARVKDMLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELLAAHAPLT  212 (262)
T ss_pred             CEeechhHHhccCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHH
Confidence            999999996 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         152 MIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       152 ~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      ++.+|+.++......+    +.+.+.+...+.++++++++.+|++||
T Consensus       213 ~~~~K~~l~~~~~~~l----~~~~~~~~~~~~~~~~~e~~~af~~kr  255 (262)
T PRK06144        213 LRATKEALRRLRREGL----PDGDDLIRMCYMSEDFREGVEAFLEKR  255 (262)
T ss_pred             HHHHHHHHHHhhhcCH----HHHHHHHHHHhcChHHHHHHHHHhcCC
Confidence            9999999987654433    445567788999999999999999987

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.5e-42  Score=286.32  Aligned_cols=186  Identities=26%  Similarity=0.275  Sum_probs=165.1

Q ss_pred             CCCCccCchhhhhh--------------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCC
Q psy5402           1 MTNNPTDLINEDTD--------------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNH   66 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~--------------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~   66 (198)
                      .||+|.|++++...              ....+++++..+..+||||||+|||+|+|||++|+++||+||++++      
T Consensus        66 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~------  139 (276)
T PRK05864         66 GFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSS------  139 (276)
T ss_pred             CeecCcchhhhhcccccccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCC------
Confidence            48999999976321              1123456788899999999999999999999999999999999999      


Q ss_pred             CcccceEEEecccccccccC-CchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHh
Q psy5402          67 PVFVLQATFHTPFTLRGMTP-EGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWA  145 (198)
Q Consensus        67 ~~~~~~a~~~~pe~~~Gi~p-~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la  145 (198)
                            ++|++||+++|++| ++|+++++++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|+
T Consensus       140 ------a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la  213 (276)
T PRK05864        140 ------AYFRAAGINNGLTASELGLSYLLPRAIGSSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMA  213 (276)
T ss_pred             ------CEecCcccccCCCCCCcchheehHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHH
Confidence                  99999999999997 68889999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHhhchhhh-cHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHccC
Q psy5402         146 KLPPQSMIFAKQLVRVPMLS-MLHEANKRECKRL-EERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       146 ~~~~~a~~~~K~~l~~~~~~-~~~~~~~~e~~~~-~~~~~~~~~~e~~~af~~kr  198 (198)
                      ..||.+++.+|+.++..... ++++.++.|.... ...+.++|+++++.+|++||
T Consensus       214 ~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~d~~e~~~af~~kr  268 (276)
T PRK05864        214 GFSRPGIELTKRTLWSGLDAASLEAHMQAEGLGQLFVRLLTANFEEAVAARAEKR  268 (276)
T ss_pred             hCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhccChhHHHHHHHHhccC
Confidence            99999999999999876554 6777777675432 23578999999999999987

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-41  Score=283.04  Aligned_cols=183  Identities=24%  Similarity=0.325  Sum_probs=168.4

Q ss_pred             CCCCccCchhhhhh------h---HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccc
Q psy5402           1 MTNNPTDLINEDTD------T---SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVL   71 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~------~---~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~   71 (198)
                      .||+|.|++++...      .   ...+.+++.++.++||||||+|||+|+|||++|+++||+||++++           
T Consensus        59 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-----------  127 (257)
T PRK06495         59 VFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASEN-----------  127 (257)
T ss_pred             CcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCC-----------
Confidence            48999999987432      0   123456788899999999999999999999999999999999999           


Q ss_pred             eEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHH
Q psy5402          72 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQS  151 (198)
Q Consensus        72 ~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a  151 (198)
                       ++|++||+++|+.   |+++++++++|+.+|++++++|++++|+||+++||||+++|++++.+++.++++++++.||.+
T Consensus       128 -a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~~~a  203 (257)
T PRK06495        128 -AVFGLPEIDVGLA---GGGKHAMRLFGHSLTRRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIASKSPLA  203 (257)
T ss_pred             -CEeeChhhccCcc---ccHHHHHHHhCHHHHHHHHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHH
Confidence             9999999999997   445679999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         152 MIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       152 ~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      ++.+|+.++.....++++.++.|...+...+.++|+++++++|++||
T Consensus       204 ~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~af~~kr  250 (257)
T PRK06495        204 TRLAKDALNTIENMSLRDGYRYEQDITAKLAKTEDAKEAQRAFLEKR  250 (257)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhccC
Confidence            99999999988777889999999999999999999999999999987

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-41  Score=288.06  Aligned_cols=185  Identities=29%  Similarity=0.389  Sum_probs=164.5

Q ss_pred             CCCCccCchhhhhh------------------------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEE
Q psy5402           1 MTNNPTDLINEDTD------------------------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVF   56 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~------------------------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~i   56 (198)
                      .||+|.|++++...                        ....+.+++..|.++||||||+|||+|+|||++|+++||+||
T Consensus        60 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ri  139 (296)
T PRK08260         60 AFCAGADLSAGGNTFDLDAPRTPVEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRL  139 (296)
T ss_pred             CeecCcChHHhhhcccccccccccccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEE
Confidence            48999999986420                        011234678889999999999999999999999999999999


Q ss_pred             eecCCcccCCCcccceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHH
Q psy5402          57 ASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERD  136 (198)
Q Consensus        57 a~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~  136 (198)
                      ++++            ++|++||+++|++|++|+++++++++|..+|++++++|++++|+||+++||||+|||++++.++
T Consensus       140 a~~~------------a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~  207 (296)
T PRK08260        140 ASTA------------ARFGFVFGRRGIVPEAASSWFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLPA  207 (296)
T ss_pred             eeCC------------CEEecchhhcCcCCCcchhhhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHHHHH
Confidence            9999            9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcC-CHHHHHHHHHHhhchhh--hcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         137 LWPRIHAWAKL-PPQSMIFAKQLVRVPML--SMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       137 a~~~a~~la~~-~~~a~~~~K~~l~~~~~--~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +.+++++++.. +|.+++.+|+.++....  .... ....|...+..++.++|+++++.+|++||
T Consensus       208 a~~~a~~i~~~~~~~a~~~~K~~l~~~~~~~~~~~-~~~~e~~~~~~~~~~~d~~egi~af~~kr  271 (296)
T PRK08260        208 ARALAREIADNTSPVSVALTRQMMWRMAGADHPME-AHRVDSRAIYSRGRSGDGKEGVSSFLEKR  271 (296)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhcccCCCcHH-HHHHHHHHHHHHccChhHHHHHHHHhcCC
Confidence            99999999985 99999999999987642  2233 33557778888999999999999999987

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=100.00  E-value=3.6e-41  Score=279.06  Aligned_cols=182  Identities=25%  Similarity=0.374  Sum_probs=160.6

Q ss_pred             CCCccCchhhhhh----hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEec
Q psy5402           2 TNNPTDLINEDTD----TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHT   77 (198)
Q Consensus         2 ~s~G~Dl~~~~~~----~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~   77 (198)
                      ||+|.|++++...    ....+.+++.++.++||||||+|||+|+|||++|+++||+||++++            ++|++
T Consensus        57 FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~------------a~f~~  124 (251)
T TIGR03189        57 FSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPD------------AKLGQ  124 (251)
T ss_pred             eecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCC------------CEEeC
Confidence            8999999985321    2234467788999999999999999999999999999999999999            99999


Q ss_pred             ccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHH-HHHHhcCCHHHHHHHH
Q psy5402          78 PFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPR-IHAWAKLPPQSMIFAK  156 (198)
Q Consensus        78 pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~-a~~la~~~~~a~~~~K  156 (198)
                      ||+++|++|++ +++++++++|..++++++++|++++|+||+++||||+|+|+.+  +.+.++ +++++..||.+++.+|
T Consensus       125 pe~~~Gl~p~~-~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~~~--~~a~~~~a~~la~~~p~a~~~~K  201 (251)
T TIGR03189       125 PEIVLGVFAPA-ASCLLPERMGRVAAEDLLYSGRSIDGAEGARIGLANAVAEDPE--NAALAWFDEHPAKLSASSLRFAV  201 (251)
T ss_pred             chhhcCCCCCc-hHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCcceecCcHH--HHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999874 5678999999999999999999999999999999999998644  456665 6899999999999999


Q ss_pred             HHhhchhhhcHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         157 QLVRVPMLSMLHEAN-KRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       157 ~~l~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +.++.....+++..+ +.|...+..++.++|+++++++|++||
T Consensus       202 ~~l~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr  244 (251)
T TIGR03189       202 RAARLGMNERVKAKIAEVEALYLEELMATHDAVEGLNAFLEKR  244 (251)
T ss_pred             HHHHhhhcccHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhcC
Confidence            999987777777655 467778889999999999999999987

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4e-41  Score=277.53  Aligned_cols=180  Identities=24%  Similarity=0.344  Sum_probs=164.0

Q ss_pred             CCCCccCchhhhh--hhHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecc
Q psy5402           1 MTNNPTDLINEDT--DTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTP   78 (198)
Q Consensus         1 ~~s~G~Dl~~~~~--~~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~p   78 (198)
                      .||+|.|+++...  .....+.+++.++.++||||||+|||+|+|||++|+++||+||++++            ++|++|
T Consensus        55 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~------------a~f~~p  122 (243)
T PRK07854         55 VFCAGADLSGDVYADDFPDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPE------------AYFQFP  122 (243)
T ss_pred             ceecccCCccchhHHHHHHHHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCC------------CEEecc
Confidence            4899999986321  12334567888999999999999999999999999999999999999            999999


Q ss_pred             cccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy5402          79 FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQL  158 (198)
Q Consensus        79 e~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~  158 (198)
                      |+++|++|++|+++++++++|+.+|++++++|++++|+||+++||||+|++   +. ++.++++++++.||.++..+|+.
T Consensus       123 e~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~---~~-~a~~~a~~l~~~~~~a~~~~K~~  198 (243)
T PRK07854        123 VAKYGIALDNWTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMANRIGT---LA-DAQAWAAEIAGLAPLALQHAKRV  198 (243)
T ss_pred             ccccccCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCcccccC---HH-HHHHHHHHHHhCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999976   22 78999999999999999999999


Q ss_pred             hhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         159 VRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       159 l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      ++..  .++++.++.|...+..++.++|+++++.+|++||
T Consensus       199 l~~~--~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr  236 (243)
T PRK07854        199 LNDD--GAIEEAWPAHKELFDKAWASQDAIEAQVARIEKR  236 (243)
T ss_pred             HHcc--CCHHHHHHHHHHHHHHHhcCchHHHHHHHHhCCC
Confidence            9875  5678888899999999999999999999999986

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.4e-41  Score=280.54  Aligned_cols=184  Identities=20%  Similarity=0.216  Sum_probs=168.5

Q ss_pred             CCCCccCchhhhhhh---H-----------HHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCC
Q psy5402           1 MTNNPTDLINEDTDT---S-----------ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNH   66 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~---~-----------~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~   66 (198)
                      .||+|.|++++....   .           ..+++++..+.++||||||+|||+|+|||++|+++||+||++++      
T Consensus        59 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~------  132 (262)
T PRK07509         59 AFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPD------  132 (262)
T ss_pred             CcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCC------
Confidence            389999999875321   0           12345667788999999999999999999999999999999999      


Q ss_pred             CcccceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhc
Q psy5402          67 PVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK  146 (198)
Q Consensus        67 ~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~  146 (198)
                            ++|++||+++|++|++|+++++++++|..++++++++|++++|+||+++||||++++  ++.+++.++++++++
T Consensus       133 ------a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~--~~~~~a~~~a~~l~~  204 (262)
T PRK07509        133 ------TKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELTYTARVFSAEEALELGLVTHVSD--DPLAAALALAREIAQ  204 (262)
T ss_pred             ------CEeecchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCChhhhhc--hHHHHHHHHHHHHHh
Confidence                  999999999999999999999999999999999999999999999999999999996  367899999999999


Q ss_pred             CCHHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         147 LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       147 ~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      .||.++..+|+.++.....++++.++.|.+.+...+.++|+++++.+|++||
T Consensus       205 ~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr  256 (262)
T PRK07509        205 RSPDAIAAAKRLINRSWTASVRALLARESVEQIRLLLGKNQKIAVKAQMKKR  256 (262)
T ss_pred             CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCC
Confidence            9999999999999998777888889999999999999999999999999987

>PLN02921 naphthoate synthase

Probab=100.00  E-value=5e-41  Score=287.22  Aligned_cols=185  Identities=22%  Similarity=0.256  Sum_probs=164.5

Q ss_pred             CCCCccCchhhhhhh------HH--HHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccce
Q psy5402           1 MTNNPTDLINEDTDT------SI--TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQ   72 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~------~~--~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~   72 (198)
                      .||+|+|++++....      ..  ...+++.+|.++||||||+|||+|+|||++|+++||+||++++            
T Consensus       124 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~------------  191 (327)
T PLN02921        124 AFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADN------------  191 (327)
T ss_pred             ceecCcChhhhhcccccchhHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCC------------
Confidence            489999998864211      11  1234677899999999999999999999999999999999999            


Q ss_pred             EEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHH
Q psy5402          73 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSM  152 (198)
Q Consensus        73 a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~  152 (198)
                      ++|++||+++|++|++++++++++++|..++++++++|+.++|+||+++||||+|+|.+++.+++.+++++|+..||.++
T Consensus       192 A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~al  271 (327)
T PLN02921        192 AVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTASEALKMGLVNTVVPLDELEGETVKWCREILRNSPTAI  271 (327)
T ss_pred             CEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHHHHHHHHccCHHHH
Confidence            99999999999999998899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         153 IFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       153 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +.+|+.++..... .....+.+...+...+.++|++|++++|++||
T Consensus       272 ~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr  316 (327)
T PLN02921        272 RVLKSALNAADDG-HAGLQELGGNATLLFYGSEEGNEGRTAYLEGR  316 (327)
T ss_pred             HHHHHHHHHhhcc-hhHHHHHHHHHHHHHhcCHHHHHHHHHHhccC
Confidence            9999999886443 33344445577888899999999999999987

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.1e-41  Score=276.44  Aligned_cols=182  Identities=22%  Similarity=0.228  Sum_probs=167.3

Q ss_pred             CCCCccCchhhhhhh----HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEe
Q psy5402           1 MTNNPTDLINEDTDT----SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFH   76 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~----~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~   76 (198)
                      .||+|.|++++....    ...+.+++..+.++||||||+|||+|+|||++|+++||+||++++            ++|+
T Consensus        56 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~------------a~f~  123 (248)
T PRK06072         56 AFCVGADLSEFAPDFAIDLRETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRD------------VKFV  123 (248)
T ss_pred             CcccCcCHHHHhhhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCC------------CEEe
Confidence            389999999875422    234567888899999999999999999999999999999999999            9999


Q ss_pred             cccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q psy5402          77 TPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAK  156 (198)
Q Consensus        77 ~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~K  156 (198)
                      +||+++|++|++|+++++++++|. ++++++++|++++|+||+++||||++   +++.+++.++++++++.||.+++.+|
T Consensus       124 ~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~lll~g~~~~a~eA~~~Glv~~~---~~~~~~a~~~a~~la~~~~~a~~~~K  199 (248)
T PRK06072        124 TAFQRLGLASDTGVAYFLLKLTGQ-RFYEILVLGGEFTAEEAERWGLLKIS---EDPLSDAEEMANRISNGPFQSYIAAK  199 (248)
T ss_pred             cchhhcCcCCCchHHHHHHHHhhH-HHHHHHHhCCccCHHHHHHCCCcccc---chHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            999999999999999999999996 89999999999999999999999964   35778999999999999999999999


Q ss_pred             HHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         157 QLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       157 ~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +.++.....++++.++.|.+.+..++.++|+++++++|++||
T Consensus       200 ~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr  241 (248)
T PRK06072        200 RMINLVLYNDLEEFLEYESAIQGYLGKTEDFKEGISSFKEKR  241 (248)
T ss_pred             HHHHHHhhcCHHHHHHHHHHHHHHHhCChhHHHHHHHHhcCC
Confidence            999988778889999999999999999999999999999987

>PRK08321 naphthoate synthase; Validated

Probab=100.00  E-value=1.2e-40  Score=282.56  Aligned_cols=185  Identities=22%  Similarity=0.251  Sum_probs=164.0

Q ss_pred             CCCCccCchhhhhh-------------hH-----HHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEee-cCC
Q psy5402           1 MTNNPTDLINEDTD-------------TS-----ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFAS-DTA   61 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~-------------~~-----~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~-~~~   61 (198)
                      .||+|.|++++...             ..     ..+.++...+.++||||||+|||+|+|||++|+++||+||++ ++ 
T Consensus        88 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~-  166 (302)
T PRK08321         88 AFCSGGDQRIRGRDGYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREH-  166 (302)
T ss_pred             eeecCcChhhhccccccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCC-
Confidence            38999999874210             00     012246677899999999999999999999999999999999 68 


Q ss_pred             cccCCCcccceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHH
Q psy5402          62 ILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRI  141 (198)
Q Consensus        62 ~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a  141 (198)
                                 ++|++||+++|++|++++++++++++|..+|++++++|+.++|+||+++||||++||++++.+++.+++
T Consensus       167 -----------a~f~~pe~~~Gl~p~~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a  235 (302)
T PRK08321        167 -----------ARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWA  235 (302)
T ss_pred             -----------CEEECCccccccCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHH
Confidence                       999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         142 HAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       142 ~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      ++|+..||.+++.+|+.++.... ........|.+.+..++.++|+++++.+|++||
T Consensus       236 ~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~ekr  291 (302)
T PRK08321        236 REINGKSPTAMRMLKYAFNLTDD-GLVGQQLFAGEATRLAYMTDEAQEGRDAFLEKR  291 (302)
T ss_pred             HHHHhCCHHHHHHHHHHHHhhhc-ccHHHHHHHHHHHHHHhcCHHHHHHHHHHhccC
Confidence            99999999999999999987644 344445568888899999999999999999987

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.5e-41  Score=277.71  Aligned_cols=183  Identities=22%  Similarity=0.337  Sum_probs=167.6

Q ss_pred             CCCCccCchhhhhh----------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCccc
Q psy5402           1 MTNNPTDLINEDTD----------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFV   70 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~----------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~   70 (198)
                      .||+|.|++++...          ....+.+++.++..+||||||+|||+|+|||++|+++||+||++++          
T Consensus        62 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~----------  131 (260)
T PRK07827         62 TFCAGADLSEAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPE----------  131 (260)
T ss_pred             CccCCcChHHHhhcccCchhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCC----------
Confidence            48999999986431          1134567788999999999999999999999999999999999999          


Q ss_pred             ceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHH
Q psy5402          71 LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQ  150 (198)
Q Consensus        71 ~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~  150 (198)
                        ++|++||+++|++|++|+++++++++ ..++++++++|+.++|+||+++||||++++  ++.+++.++++++++.||.
T Consensus       132 --a~f~~pe~~~Gl~p~~g~~~~l~~l~-~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~~~a~~la~~~~~  206 (260)
T PRK07827        132 --STFALTEARIGVAPAIISLTLLPRLS-PRAAARYYLTGEKFGAAEAARIGLVTAAAD--DVDAAVAALLADLRRGSPQ  206 (260)
T ss_pred             --CEEeCcccccCCCCCcccchhHHhhh-HHHHHHHHHhCCccCHHHHHHcCCcccchH--HHHHHHHHHHHHHHhCCHH
Confidence              99999999999999999999998864 568999999999999999999999999975  5889999999999999999


Q ss_pred             HHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         151 SMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       151 a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +++.+|+.++......++..++.|...+..++.++++++++++|++||
T Consensus       207 a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~kr  254 (260)
T PRK07827        207 GLAESKALTTAAVLAGFDRDAEELTEESARLFVSDEAREGMTAFLQKR  254 (260)
T ss_pred             HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCC
Confidence            999999999998888889999999999999999999999999999987

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.8e-40  Score=274.50  Aligned_cols=182  Identities=20%  Similarity=0.240  Sum_probs=169.4

Q ss_pred             CCCCccCchhhhhhhH--HHH--HHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEe
Q psy5402           1 MTNNPTDLINEDTDTS--ITL--QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFH   76 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~~--~~~--~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~   76 (198)
                      .||+|.|++++.....  ..+  ++++..+.++||||||+|||+|+|||++|+++||+||++++            ++|+
T Consensus        61 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~------------a~f~  128 (249)
T PRK07110         61 YFATGGTQEGLLSLQTGKGTFTEANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRE------------SVYT  128 (249)
T ss_pred             CeeCCcChHHHhhccchhhhHhhHHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCC------------CEec
Confidence            4899999998743211  111  46888999999999999999999999999999999999999            9999


Q ss_pred             cccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q psy5402          77 TPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAK  156 (198)
Q Consensus        77 ~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~K  156 (198)
                      +||+++|++|++|+++++++++|+.+|++++++|++++++||+++||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus       129 ~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  208 (249)
T PRK07110        129 ANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLAEKPRHSLVLLK  208 (249)
T ss_pred             CchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy5402         157 QLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAF  194 (198)
Q Consensus       157 ~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af  194 (198)
                      +.++......+++.++.|...+...|.++|.+|++++.
T Consensus       209 ~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~~~  246 (249)
T PRK07110        209 DHLVADRRRRLPEVIEQEVAMHEKTFHQPEVKRRIESL  246 (249)
T ss_pred             HHHHHhhhccHHHHHHHHHHHHHHHhCCHhHHHHHHHh
Confidence            99999888899999999999999999999999999875

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=100.00  E-value=1.4e-40  Score=276.31  Aligned_cols=183  Identities=32%  Similarity=0.441  Sum_probs=168.1

Q ss_pred             CCCCccCchhhhh-h-------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccce
Q psy5402           1 MTNNPTDLINEDT-D-------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQ   72 (198)
Q Consensus         1 ~~s~G~Dl~~~~~-~-------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~   72 (198)
                      .||+|+|++++.. .       .....++++..+.++||||||+|||+|+|||++|+++||+|||+++            
T Consensus        61 ~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~------------  128 (257)
T COG1024          61 AFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAED------------  128 (257)
T ss_pred             ceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCC------------
Confidence            3899999999763 1       1223345889999999999999999999999999999999999999            


Q ss_pred             EEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCc-hhHHHHHHHHHHHHhcCCHHH
Q psy5402          73 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTT-EEIERDLWPRIHAWAKLPPQS  151 (198)
Q Consensus        73 a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~-~~l~~~a~~~a~~la~~~~~a  151 (198)
                      ++|++||+++|++|+.|++++++|++|..+++++++||+.++++||+++||||++++. +++.+.+.+++++++. +|.+
T Consensus       129 a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~-~~~a  207 (257)
T COG1024         129 AKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA-PPLA  207 (257)
T ss_pred             cEecCcccccccCCCCcHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHcc-CHHH
Confidence            9999999999999987999999999999999999999999999999999999999985 7999999999999998 9999


Q ss_pred             HHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Q psy5402         152 MIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN  196 (198)
Q Consensus       152 ~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~  196 (198)
                      +..+|+.++......+++..+.+...+...+.++|++|++++|++
T Consensus       208 ~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~eg~~a~~~  252 (257)
T COG1024         208 LAATKRLVRAALEADLAEALEAEALAFARLFSSEDFREGVRAFLE  252 (257)
T ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcChhHHHHHHHHHc
Confidence            999999999987666888888888888888999999999999998

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.2e-40  Score=274.32  Aligned_cols=185  Identities=23%  Similarity=0.219  Sum_probs=169.0

Q ss_pred             CCCCccCchhhhhhh-----HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEE
Q psy5402           1 MTNNPTDLINEDTDT-----SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATF   75 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~-----~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~   75 (198)
                      .||+|.|++++....     ...+++++.++.++||||||+|||+|+|||++|+++||+||++++            ++|
T Consensus        60 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~------------a~f  127 (258)
T PRK06190         60 AFCAGLDLKELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASER------------ARF  127 (258)
T ss_pred             CccCCcCHHHHhcccchhhHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCC------------CEE
Confidence            489999999875321     224567888999999999999999999999999999999999999            999


Q ss_pred             ecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHH
Q psy5402          76 HTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFA  155 (198)
Q Consensus        76 ~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~  155 (198)
                      ++||+++|++|++|+++++++++|+.+|++++++|++++|+||+++||||+++|++++.+++.++++++++.||.+++.+
T Consensus       128 ~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~  207 (258)
T PRK06190        128 ADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNNPAAVRAL  207 (258)
T ss_pred             ECcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhchhhhcHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHcc
Q psy5402         156 KQLVRVPMLSMLHEANKRECKRLEERWES---EEFMNAITAFFNR  197 (198)
Q Consensus       156 K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~e~~~af~~k  197 (198)
                      |+.++.....++++.++.|...+...|.+   ...++..++|+.+
T Consensus       208 K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~  252 (258)
T PRK06190        208 KASYDDGAAAQTGDALALEAEAARAHNRSVSPDGIAARREAVMAR  252 (258)
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHh
Confidence            99999987888999999999999999988   5556666666653

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=2.8e-40  Score=274.25  Aligned_cols=182  Identities=18%  Similarity=0.140  Sum_probs=163.3

Q ss_pred             CCCCccCchhhhhh---------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccc
Q psy5402           1 MTNNPTDLINEDTD---------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVL   71 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~---------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~   71 (198)
                      .||+|.|++++...         ....+.+++.++.++||||||+|||+|+|||++|+++||+||++++           
T Consensus        58 ~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~-----------  126 (255)
T PRK07112         58 VFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADET-----------  126 (255)
T ss_pred             CcccCcCHHHHhhccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCC-----------
Confidence            48999999987431         1123456788999999999999999999999999999999999999           


Q ss_pred             eEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHH
Q psy5402          72 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQS  151 (198)
Q Consensus        72 ~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a  151 (198)
                       ++|++||+++|++|+++ +.++++++|..++++++++|+.++|+||+++||||+++|+++.  .+.+++++++..||.+
T Consensus       127 -a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~~~a~~l~~~~p~a  202 (255)
T PRK07112        127 -APFSLSELLFGLIPACV-LPFLIRRIGTQKAHYMTLMTQPVTAQQAFSWGLVDAYGANSDT--LLRKHLLRLRCLNKAA  202 (255)
T ss_pred             -CEEeCchhhhccCcchh-hHHHHHHhCHHHHHHHHHhCCcccHHHHHHcCCCceecCcHHH--HHHHHHHHHHhCCHHH
Confidence             99999999999999865 4579999999999999999999999999999999999997653  5788999999999999


Q ss_pred             HHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         152 MIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       152 ~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      ++.+|+.++.. ...+.+.++.|...+...+.++|+++++.+|++||
T Consensus       203 ~~~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr  248 (255)
T PRK07112        203 VARYKSYASTL-DDTVAAARPAALAANIEMFADPENLRKIARYVETG  248 (255)
T ss_pred             HHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCC
Confidence            99999999865 55678888999999999999999999999999987

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=100.00  E-value=1.8e-40  Score=285.71  Aligned_cols=184  Identities=18%  Similarity=0.216  Sum_probs=167.6

Q ss_pred             CCCCccCchhhhhh-----h------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcc
Q psy5402           1 MTNNPTDLINEDTD-----T------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVF   69 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~-----~------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~   69 (198)
                      .||+|+|++++...     .      ...+.+++.++..+||||||+|||+|+|||++|+++||+||++++         
T Consensus        60 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~---------  130 (342)
T PRK05617         60 GFCAGGDIRALYEAARAGDPLAADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTER---------  130 (342)
T ss_pred             ceeCCcCHHHHHhhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCC---------
Confidence            48999999986431     0      112245778899999999999999999999999999999999999         


Q ss_pred             cceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHH-------------
Q psy5402          70 VLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERD-------------  136 (198)
Q Consensus        70 ~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~-------------  136 (198)
                         ++|++||+++|++|++|++++++++.| ..|++++++|+.++|+||+++||||+++|++++.+.             
T Consensus       131 ---a~f~~pe~~lGl~P~~g~~~~L~r~~g-~~a~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~  206 (342)
T PRK05617        131 ---TKMAMPETGIGFFPDVGGTYFLSRAPG-ALGTYLALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGA  206 (342)
T ss_pred             ---CEeeCCccccCcCCCccceeEehhccc-HHHHHHHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccch
Confidence               999999999999999999999999877 789999999999999999999999999999888776             


Q ss_pred             -------------------------------------------------HHHHHHHHhcCCHHHHHHHHHHhhchhhhcH
Q psy5402         137 -------------------------------------------------LWPRIHAWAKLPPQSMIFAKQLVRVPMLSML  167 (198)
Q Consensus       137 -------------------------------------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~  167 (198)
                                                                       +.+++++|++.||.+++.+|++++.....++
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l  286 (342)
T PRK05617        207 DVVDAALAAFATPAPASELAAQRAWIDECFAGDTVEDIIAALEADGGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTL  286 (342)
T ss_pred             hHHHHHHHHhccCCCcchhHHHHHHHHHHhCCCCHHHHHHHHHhccHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCH
Confidence                                                             8899999999999999999999998877889


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHH-cc
Q psy5402         168 HEANKRECKRLEERWESEEFMNAITAFF-NR  197 (198)
Q Consensus       168 ~~~~~~e~~~~~~~~~~~~~~e~~~af~-~k  197 (198)
                      ++.++.|...+...+.++|+++++++|+ +|
T Consensus       287 ~~~~~~e~~~~~~~~~~~d~~egv~afl~ek  317 (342)
T PRK05617        287 EECLRRELRLALAMLRSPDFVEGVRAVLIDK  317 (342)
T ss_pred             HHHHHHHHHHHHHHHhCCchhhccceEEEcC
Confidence            9999999999999999999999999997 65

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.2e-39  Score=274.40  Aligned_cols=162  Identities=20%  Similarity=0.170  Sum_probs=149.4

Q ss_pred             HHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccc-cccCCchhhhHHHHHhc
Q psy5402          21 KYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLR-GMTPEGCSSVLFPRIFG   99 (198)
Q Consensus        21 ~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~-Gi~p~~g~~~~l~~~vG   99 (198)
                      ..+..+.++||||||+|||+|+|||++|+++||+||++++            ++|++||+++ |+++  ++++  .+++|
T Consensus       103 ~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~------------A~f~~pe~~l~G~~~--~~~~--~~~vG  166 (298)
T PRK12478        103 QKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDD------------AVIGTPYSRMWGAYL--TGMW--LYRLS  166 (298)
T ss_pred             HHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCC------------cEEeccccccccCCc--hhHH--HHHhh
Confidence            3566789999999999999999999999999999999999            9999999997 8875  2333  35699


Q ss_pred             HHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHHHHHhhchhh-hcHHHHHHHHHHHH
Q psy5402         100 NSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPML-SMLHEANKRECKRL  178 (198)
Q Consensus       100 ~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~e~~~~  178 (198)
                      ..+|++++++|++++|+||+++||||+|||++++.+++.+++++++..||.+++.+|+.++.... .++++.++.|...+
T Consensus       167 ~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~l~~~~~~e~~~~  246 (298)
T PRK12478        167 LAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARIPLSQLQAQKLIVNQAYENMGLASTQTLGGILD  246 (298)
T ss_pred             HHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998766 35899999999999


Q ss_pred             HHHhCCHHHH--------HHHHHHHccC
Q psy5402         179 EERWESEEFM--------NAITAFFNRK  198 (198)
Q Consensus       179 ~~~~~~~~~~--------e~~~af~~kr  198 (198)
                      ..++.++|++        ||+++|++||
T Consensus       247 ~~~~~s~d~~e~~~~~~~egv~Af~ekR  274 (298)
T PRK12478        247 GLMRNTPDALEFIRTAETQGVRAAVERR  274 (298)
T ss_pred             HHHhcChhHHHHHHHHHHHHHHHHHHhc
Confidence            9999999997        5999999997

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=3e-39  Score=291.07  Aligned_cols=185  Identities=14%  Similarity=0.115  Sum_probs=170.8

Q ss_pred             CCCccCchhhhhhh----H---HHHHHHHHHHhcCCCcEEEEE-cCccchHH-HHHhhhcCEEEe-------ecCCcccC
Q psy5402           2 TNNPTDLINEDTDT----S---ITLQKYVAAFIDYPKPLIAIV-NGPAIGIS-ATTLALCDIVFA-------SDTAILLN   65 (198)
Q Consensus         2 ~s~G~Dl~~~~~~~----~---~~~~~~~~~i~~~~kp~IA~v-~G~a~GgG-~~lalacD~~ia-------~~~~~~~~   65 (198)
                      ||+|.|++.+....    .   ..+++++.+|..+||||||+| ||+|+||| ++|+++||+||+       +++     
T Consensus       330 F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~-----  404 (546)
T TIGR03222       330 LVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPE-----  404 (546)
T ss_pred             eecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCC-----
Confidence            89999997432111    1   223557889999999999999 89999999 999999999999       888     


Q ss_pred             CCcccceEEEecccccccccCCchhhhHHHHHh-cHHHH--HHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHH
Q psy5402          66 HPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIF-GNSVA--SELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIH  142 (198)
Q Consensus        66 ~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~v-G~~~a--~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~  142 (198)
                             ++|++||+++|++|++|++++|++++ |.+++  ++++++|+.++|+||+++||||+++|++++.+++.++++
T Consensus       405 -------a~f~~~e~~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~  477 (546)
T TIGR03222       405 -------PAITLSELNFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALE  477 (546)
T ss_pred             -------CEEeCCccccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHH
Confidence                   99999999999999999999999998 99988  559999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHhhchhhhcHHHH-HHHHHHHHHHHhCCHHHHH---HHHHHHccC
Q psy5402         143 AWAKLPPQSMIFAKQLVRVPMLSMLHEA-NKRECKRLEERWESEEFMN---AITAFFNRK  198 (198)
Q Consensus       143 ~la~~~~~a~~~~K~~l~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~e---~~~af~~kr  198 (198)
                      ++++.||.+++.+|+.++.....++++. +..|..++..++.++|.+|   ++++|++||
T Consensus       478 ~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr  537 (546)
T TIGR03222       478 ERASFSPDALTGLEANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYGSGK  537 (546)
T ss_pred             HHHhcCHHHHHHHHHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHccCC
Confidence            9999999999999999999988899998 9999999999999999999   999999997

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=2.1e-39  Score=292.66  Aligned_cols=185  Identities=14%  Similarity=0.117  Sum_probs=170.0

Q ss_pred             CCCccCchhhhh-------hhHHHHHHHHHHHhcCCCcEEEEEc-CccchHH-HHHhhhcCEEEee-------cCCcccC
Q psy5402           2 TNNPTDLINEDT-------DTSITLQKYVAAFIDYPKPLIAIVN-GPAIGIS-ATTLALCDIVFAS-------DTAILLN   65 (198)
Q Consensus         2 ~s~G~Dl~~~~~-------~~~~~~~~~~~~i~~~~kp~IA~v~-G~a~GgG-~~lalacD~~ia~-------~~~~~~~   65 (198)
                      ||+|+|++....       .....+++++.+|..+||||||+|| |+|+||| ++|+++||+||++       ++     
T Consensus       334 F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~-----  408 (550)
T PRK08184        334 AVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPA-----  408 (550)
T ss_pred             EEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCC-----
Confidence            899999753221       1122345678899999999999997 9999999 9999999999999       88     


Q ss_pred             CCcccceEEEecccccccccCCchhhhHHHHH-hcHHHHHHH--HhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHH
Q psy5402          66 HPVFVLQATFHTPFTLRGMTPEGCSSVLFPRI-FGNSVASEL--LYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIH  142 (198)
Q Consensus        66 ~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~-vG~~~a~~l--ll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~  142 (198)
                             ++|++||+++|++|++|++++|+++ +|.++|+++  +++|++++|+||+++||||+++|++++++++.++++
T Consensus       409 -------a~f~~pe~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~  481 (550)
T PRK08184        409 -------PAITLSALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIALE  481 (550)
T ss_pred             -------CEEECccccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHHH
Confidence                   9999999999999999999999998 699999997  589999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHhhchhhhcHHHH-HHHHHHHHHHHhCCHHHHH---HHHHHHccC
Q psy5402         143 AWAKLPPQSMIFAKQLVRVPMLSMLHEA-NKRECKRLEERWESEEFMN---AITAFFNRK  198 (198)
Q Consensus       143 ~la~~~~~a~~~~K~~l~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~e---~~~af~~kr  198 (198)
                      ++++.||.+++.+|+.++.....++++. +..|.+++..++.++|.+|   ++++|++||
T Consensus       482 ~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr  541 (550)
T PRK08184        482 ERASLSPDALTGMEANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYGTGQ  541 (550)
T ss_pred             HHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhccCC
Confidence            9999999999999999999988999999 9999999999999999999   999999997

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=1.5e-38  Score=277.07  Aligned_cols=184  Identities=18%  Similarity=0.241  Sum_probs=162.6

Q ss_pred             CCCCccCchhhhhhh------HH---HHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccc
Q psy5402           1 MTNNPTDLINEDTDT------SI---TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVL   71 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~------~~---~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~   71 (198)
                      .||+|+|++++....      ..   .+..++..|.++||||||+|||+|+|||++|+++||+||++++           
T Consensus        67 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~-----------  135 (379)
T PLN02874         67 AFSAGGDLKMFYDGRESDDSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEK-----------  135 (379)
T ss_pred             CccCccCHHHHHhhcccchHHHHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCC-----------
Confidence            389999999874311      11   2234467889999999999999999999999999999999999           


Q ss_pred             eEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHH---H------------
Q psy5402          72 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIER---D------------  136 (198)
Q Consensus        72 ~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~---~------------  136 (198)
                       ++|++||+++|++|++|+++++++++|. .++++++||++++++||+++||||++||++++.+   +            
T Consensus       136 -a~f~~pe~~iGl~p~~g~~~~L~rl~g~-~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~~  213 (379)
T PLN02874        136 -TVFATPEASVGFHTDCGFSYILSRLPGH-LGEYLALTGARLNGKEMVACGLATHFVPSEKLPELEKRLLNLNSGDESAV  213 (379)
T ss_pred             -eEEeccccccCcCCChhHHHHHHhhhHH-HHHHHHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHHhcCCCCHHHH
Confidence             9999999999999999999999999885 8999999999999999999999999999888765   2            


Q ss_pred             ----------------------------------------------------HHHHHHHHhcCCHHHHHHHHHHhhchhh
Q psy5402         137 ----------------------------------------------------LWPRIHAWAKLPPQSMIFAKQLVRVPML  164 (198)
Q Consensus       137 ----------------------------------------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~  164 (198)
                                                                          +.+++++|++.||.+++.+|++++....
T Consensus       214 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~  293 (379)
T PLN02874        214 QEAIEEFSKDVQADEDSILNKQSWINECFSKDTVEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRK  293 (379)
T ss_pred             HHHHHHhhcccCCCcchhHHHHHHHHHHhCCCCHHHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhcc
Confidence                                                                2478999999999999999999998877


Q ss_pred             hcHHHHHHHHHHHHHHHhC---CHHHHHHHHHHH-cc
Q psy5402         165 SMLHEANKRECKRLEERWE---SEEFMNAITAFF-NR  197 (198)
Q Consensus       165 ~~~~~~~~~e~~~~~~~~~---~~~~~e~~~af~-~k  197 (198)
                      .++++.++.|.......+.   ++|++||+++|+ +|
T Consensus       294 ~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~AflidK  330 (379)
T PLN02874        294 QSLAECLKKEFRLTMNILRSTVSDDVYEGIRALVIDK  330 (379)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCcCcchhhccceEEEcC
Confidence            7899999999888777777   999999999997 66

>KOG1679|consensus

Probab=100.00  E-value=4.4e-39  Score=254.17  Aligned_cols=186  Identities=22%  Similarity=0.284  Sum_probs=175.2

Q ss_pred             CCCCccCchhhhhhhH-------HHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceE
Q psy5402           1 MTNNPTDLINEDTDTS-------ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA   73 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~~-------~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a   73 (198)
                      +||+|.||+|-.+.+.       ..++.++..|..+|.||||+|+|.|.|||++++++||+|+|+++            +
T Consensus        88 vFCaGADLKER~~Ms~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~------------a  155 (291)
T KOG1679|consen   88 VFCAGADLKERKTMSPSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASS------------A  155 (291)
T ss_pred             eeecCcchHhhhcCCHHHHHHHHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhh------------c
Confidence            5899999999765443       35677889999999999999999999999999999999999999            9


Q ss_pred             EEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCch----hHHHHHHHHHHHHhcCCH
Q psy5402          74 TFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE----EIERDLWPRIHAWAKLPP  149 (198)
Q Consensus        74 ~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~----~l~~~a~~~a~~la~~~~  149 (198)
                      +|+++|++++|+|+.|++++|+|++|...|+++++|++.+++.||..+||||++|...    ...+.+.++|+++..+.|
T Consensus       156 kmGLvET~laiiPGaGGtQRLpR~vg~alaKELIftarvl~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~gP  235 (291)
T KOG1679|consen  156 KMGLVETKLAIIPGAGGTQRLPRIVGVALAKELIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQGP  235 (291)
T ss_pred             cccccccceeeecCCCccchhHHHHhHHHHHhHhhhheeccchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCCc
Confidence            9999999999999999999999999999999999999999999999999999999764    677889999999999999


Q ss_pred             HHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         150 QSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       150 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      .+++..|..++..+..++...+..|...+.....+.|-.|++.+|.+||
T Consensus       236 iavr~aKlAIn~G~evdiasgl~iEe~CYaq~i~t~drLeglaaf~ekr  284 (291)
T KOG1679|consen  236 IAVRLAKLAINLGMEVDIASGLSIEEMCYAQIIPTKDRLEGLAAFKEKR  284 (291)
T ss_pred             hhhhHHHHHhccCceecccccccHHHHHHHhcCcHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999999999987

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=1.3e-37  Score=289.72  Aligned_cols=186  Identities=22%  Similarity=0.209  Sum_probs=166.9

Q ss_pred             CCCCccCchhhhhh----------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCccc
Q psy5402           1 MTNNPTDLINEDTD----------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFV   70 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~----------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~   70 (198)
                      .||+|+|++++...          ....+++++.+|.++||||||+|||+|+|||++|+++||+||++++          
T Consensus        63 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~----------  132 (715)
T PRK11730         63 AFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPD----------  132 (715)
T ss_pred             ccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCC----------
Confidence            48999999987531          1124466788999999999999999999999999999999999999          


Q ss_pred             ceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcC---
Q psy5402          71 LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL---  147 (198)
Q Consensus        71 ~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~---  147 (198)
                        ++|++||+++|++|++|+++++++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++++..   
T Consensus       133 --a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~  210 (715)
T PRK11730        133 --ARIGLPETKLGIMPGFGGTVRLPRLIGADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLD  210 (715)
T ss_pred             --CEEeCchhhcCCCCCchHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCc
Confidence              999999999999999999999999999999999999999999999999999999999999999999999999965   


Q ss_pred             ---------CHH---------HHHHHHH------------------HhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHH
Q psy5402         148 ---------PPQ---------SMIFAKQ------------------LVRVPMLSMLHEANKRECKRLEERWESEEFMNAI  191 (198)
Q Consensus       148 ---------~~~---------a~~~~K~------------------~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~  191 (198)
                               +|.         +++.+|+                  .++.....++++.++.|.+.+..++.++|+++++
T Consensus       211 ~~~~~~~~~~p~a~~~~~~~~~~~~~k~~~~~~~~~~~pa~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~d~~egi  290 (715)
T PRK11730        211 WKARRQPKLEPLKLSKIEAMMSFTTAKGMVAQKAGKHYPAPMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTNVARALV  290 (715)
T ss_pred             cccccCcccccccccchhHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence                     354         4466664                  5677666688999999999999999999999999


Q ss_pred             HHHHccC
Q psy5402         192 TAFFNRK  198 (198)
Q Consensus       192 ~af~~kr  198 (198)
                      ++|+++|
T Consensus       291 ~aF~~~~  297 (715)
T PRK11730        291 GIFLNDQ  297 (715)
T ss_pred             HHHHHHH
Confidence            9999875

>PRK05869 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1e-37  Score=254.07  Aligned_cols=151  Identities=25%  Similarity=0.341  Sum_probs=140.3

Q ss_pred             CCCCccCchhhhhhh-------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceE
Q psy5402           1 MTNNPTDLINEDTDT-------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA   73 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~-------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a   73 (198)
                      .||+|.|++++....       ...+++++.++.++||||||+|||+|+|||++|+++||+||++++            +
T Consensus        63 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~------------a  130 (222)
T PRK05869         63 IFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDN------------V  130 (222)
T ss_pred             CcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCC------------C
Confidence            389999999875321       224567888999999999999999999999999999999999999            9


Q ss_pred             EEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHH
Q psy5402          74 TFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMI  153 (198)
Q Consensus        74 ~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~  153 (198)
                      +|++||+++|++|++|++.++++++|..++++++++|++++|+||+++||||+++|++++.+++.++++++++.||.+++
T Consensus       131 ~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~  210 (222)
T PRK05869        131 KFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWARRFLDGPPHALA  210 (222)
T ss_pred             EEcCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhchh
Q psy5402         154 FAKQLVRVPM  163 (198)
Q Consensus       154 ~~K~~l~~~~  163 (198)
                      .+|+.++..+
T Consensus       211 ~~K~~~~~~~  220 (222)
T PRK05869        211 AAKAGISDVY  220 (222)
T ss_pred             HHHHHHHHHh
Confidence            9999998653

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4e-37  Score=251.60  Aligned_cols=166  Identities=18%  Similarity=0.146  Sum_probs=150.0

Q ss_pred             CCCCccCchhhhhh------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEE
Q psy5402           1 MTNNPTDLINEDTD------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQAT   74 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~   74 (198)
                      .||+|.|++++...      ....+.+++.++.++||||||+|||+|+|||++|+++||+||+++++           ++
T Consensus        56 ~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~-----------a~  124 (229)
T PRK06213         56 IFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGP-----------FK  124 (229)
T ss_pred             ceEcCcCHHHHhcchHhHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCC-----------cE
Confidence            38999999987432      12345677889999999999999999999999999999999999885           89


Q ss_pred             EecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHH
Q psy5402          75 FHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIF  154 (198)
Q Consensus        75 ~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~  154 (198)
                      |++||+++|++|+.++..++++++|...+++++++|++++|+||+++||||+++|++++.+.+.++++++++.||.+++.
T Consensus       125 f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~  204 (229)
T PRK06213        125 IGLNEVAIGMTMPHAAIELARDRLTPSAFQRAVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARELAGLNMGAHAA  204 (229)
T ss_pred             EECchhhhCCcCChHHHHHHHHHcCHHHHHHHHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            99999999999888888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhchhhhcHHHHHHHHHHH
Q psy5402         155 AKQLVRVPMLSMLHEANKRECKR  177 (198)
Q Consensus       155 ~K~~l~~~~~~~~~~~~~~e~~~  177 (198)
                      +|+.++.....++++.++.|...
T Consensus       205 ~K~~l~~~~~~~l~~~~~~~~~~  227 (229)
T PRK06213        205 TKLKVRAAALEAIRAAIEGDAAE  227 (229)
T ss_pred             HHHHHHHHHHHHHHhchhhhhhh
Confidence            99999998777788877777654

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=5.8e-37  Score=285.24  Aligned_cols=186  Identities=19%  Similarity=0.225  Sum_probs=168.1

Q ss_pred             CCCCccCchhhhhh--------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecC-CcccCCCcccc
Q psy5402           1 MTNNPTDLINEDTD--------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDT-AILLNHPVFVL   71 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~--------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~-~~~~~~~~~~~   71 (198)
                      .||+|.|++++...        ....+++++.+|.++||||||+|||+|+|||++|+++||+||++++ +          
T Consensus        64 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~----------  133 (708)
T PRK11154         64 NFIAGADINMLAACKTAQEAEALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPK----------  133 (708)
T ss_pred             CcccCcChHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCC----------
Confidence            38999999987431        1124456788999999999999999999999999999999999987 1          


Q ss_pred             eEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHH--------
Q psy5402          72 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHA--------  143 (198)
Q Consensus        72 ~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~--------  143 (198)
                       ++|++||+++|++|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++        
T Consensus       134 -a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~~~~~  212 (708)
T PRK11154        134 -TVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPARRPL  212 (708)
T ss_pred             -ceEeCccccCCCCCCccHHhHHHhhcCHHHHHHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcCCccCcC
Confidence             48999999999999999999999999999999999999999999999999999999999999999999988        


Q ss_pred             -----HhcCCHH----------------------HHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Q psy5402         144 -----WAKLPPQ----------------------SMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN  196 (198)
Q Consensus       144 -----la~~~~~----------------------a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~  196 (198)
                           +++.+|.                      +...+|+.++.....++++.++.|.+.+..++.|+|.++++++|+.
T Consensus       213 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~  292 (708)
T PRK11154        213 PVRERLLEGNPLGRALLFKQARKKTLAKTQGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFA  292 (708)
T ss_pred             CchhhhcccCchhHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence                 4666654                      7889999999988888999999999999999999999999999985


Q ss_pred             c
Q psy5402         197 R  197 (198)
Q Consensus       197 k  197 (198)
                      .
T Consensus       293 ~  293 (708)
T PRK11154        293 T  293 (708)
T ss_pred             H
Confidence            4

>PRK08788 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=2.2e-36  Score=254.40  Aligned_cols=182  Identities=18%  Similarity=0.103  Sum_probs=148.8

Q ss_pred             CCCCccCchhhhhh----hHH-------HHHHHHHHHh---cCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCC
Q psy5402           1 MTNNPTDLINEDTD----TSI-------TLQKYVAAFI---DYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNH   66 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~----~~~-------~~~~~~~~i~---~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~   66 (198)
                      .||+|.|++++...    ...       .+.+.+.++.   .+||||||+|||+|+|||++|+++||+||++++      
T Consensus        78 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~------  151 (287)
T PRK08788         78 VFNLGGDLALFAELIRAGDRDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERG------  151 (287)
T ss_pred             ceEeCcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCC------
Confidence            48999999986421    111       1122233333   799999999999999999999999999999999      


Q ss_pred             CcccceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhc
Q psy5402          67 PVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK  146 (198)
Q Consensus        67 ~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~  146 (198)
                            ++|++||+++|++|++|+++++++++|+.++++++++|+.++|+||+++||||+++|++++.+++.+++++++.
T Consensus       152 ------a~f~~pev~lGl~p~~g~~~~l~~~vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~  225 (287)
T PRK08788        152 ------AKMGFPEILFNLFPGMGAYSFLARRVGPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSKR  225 (287)
T ss_pred             ------CEeeCchhhhCcCCCchHHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHhc
Confidence                  99999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCHHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhC-CHHHHHHHHHHH
Q psy5402         147 LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWE-SEEFMNAITAFF  195 (198)
Q Consensus       147 ~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~e~~~af~  195 (198)
                      . |.+...+|+..+.....++++.++.|..+...++. .....+-|..|.
T Consensus       226 ~-~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (287)
T PRK08788        226 K-LNGWRAMLRARRRVNPLSLEELMDITEIWVDAALQLEEKDLRTMERLV  274 (287)
T ss_pred             C-ccHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence            7 66777777766665556778888887766665554 333344455543

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=1.5e-36  Score=265.21  Aligned_cols=179  Identities=20%  Similarity=0.221  Sum_probs=157.8

Q ss_pred             CCCCccCchhhhhhh-----------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcc
Q psy5402           1 MTNNPTDLINEDTDT-----------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVF   69 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~-----------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~   69 (198)
                      .||+|+|++++....           +....++...|.++|||+||+|||+|+|||++|+++||+||++++         
T Consensus        93 aFcAGgDl~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~---------  163 (401)
T PLN02157         93 AFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDR---------  163 (401)
T ss_pred             CccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCC---------
Confidence            389999999874211           111233567789999999999999999999999999999999999         


Q ss_pred             cceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCH
Q psy5402          70 VLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP  149 (198)
Q Consensus        70 ~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~  149 (198)
                         ++|++||+++|++|++|++++|++++|. .++++++||+.++|+||+++||||++||++++ +.+.+++++++..+|
T Consensus       164 ---a~fa~PE~~iGl~Pd~G~s~~L~rl~G~-~a~~L~LTG~~i~A~eA~~~GLv~~vVp~~~l-~~~~~~~~~i~~~~p  238 (401)
T PLN02157        164 ---TIFATPETIIGFHPDAGASFNLSHLPGR-LGEYLGLTGLKLSGAEMLACGLATHYIRSEEI-PVMEEQLKKLLTDDP  238 (401)
T ss_pred             ---CEEEChhhhcCCCCCccHHHHHHHhhhH-HHHHHHHcCCcCCHHHHHHcCCceEEeCHhHH-HHHHHHHHHHHcCCH
Confidence               9999999999999999999999999996 79999999999999999999999999999998 678899999999999


Q ss_pred             HHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy5402         150 QSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAF  194 (198)
Q Consensus       150 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af  194 (198)
                      .++..+|+.++.. ..+....+..+...+..++.+++++|++.+|
T Consensus       239 ~av~~~k~~~~~~-~~~~~~~l~~~~~~i~~~f~~~d~~ei~~al  282 (401)
T PLN02157        239 SVVESCLEKCAEV-AHPEKTGVIRRIDLLEKCFSHDTVEEIIDSL  282 (401)
T ss_pred             HHHHHHHHHHhcc-cCCcchhHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            9999999999875 2334556666788888999999999999999

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.8e-36  Score=254.30  Aligned_cols=154  Identities=28%  Similarity=0.392  Sum_probs=141.1

Q ss_pred             HHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhhHHHHHh
Q psy5402          19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIF   98 (198)
Q Consensus        19 ~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~v   98 (198)
                      +.+++..+.++||||||+|||+|+|||++|+++||+||++++            ++|++||+++|+ |+ .+.+++++++
T Consensus       107 ~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~------------a~f~~pe~~lGl-~~-~~~~~l~~~i  172 (288)
T PRK08290        107 YLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDD------------AFFSDPVVRMGI-PG-VEYFAHPWEL  172 (288)
T ss_pred             HHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCC------------CEecCcccccCc-Cc-chHHHHHHHh
Confidence            456677899999999999999999999999999999999999            999999999999 44 3466788999


Q ss_pred             cHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHHHHHhhchhhh-cHHHHHHHHHHH
Q psy5402          99 GNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLS-MLHEANKRECKR  177 (198)
Q Consensus        99 G~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~e~~~  177 (198)
                      |+.+++++++||+.++|+||+++||||++||++++.+++.++++++++.||.+++.+|+.++..... .++..++.|...
T Consensus       173 G~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~  252 (288)
T PRK08290        173 GPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMPPFGLRLTKRAVNQTLDAQGFRAALDAVFDL  252 (288)
T ss_pred             hHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999987664 588888888888


Q ss_pred             HHHHh-CCHH
Q psy5402         178 LEERW-ESEE  186 (198)
Q Consensus       178 ~~~~~-~~~~  186 (198)
                      ....+ .+++
T Consensus       253 ~~~~~~~~~~  262 (288)
T PRK08290        253 HQLGHAHNAE  262 (288)
T ss_pred             HHHccccchh
Confidence            88878 6665

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=100.00  E-value=3e-36  Score=280.02  Aligned_cols=186  Identities=19%  Similarity=0.231  Sum_probs=165.6

Q ss_pred             CCCCccCchhhhhh----h----HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecC-CcccCCCcccc
Q psy5402           1 MTNNPTDLINEDTD----T----SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDT-AILLNHPVFVL   71 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~----~----~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~-~~~~~~~~~~~   71 (198)
                      .||+|.|++++...    .    ...+++++.+|.++||||||+|||+|+|||++|+++||+|||+++ +          
T Consensus        59 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~----------  128 (699)
T TIGR02440        59 NFIAGADISMLAACQTAGEAKALAQQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDK----------  128 (699)
T ss_pred             ceeeccCchhhhccCChhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCC----------
Confidence            38999999987421    1    224567888999999999999999999999999999999999975 2          


Q ss_pred             eEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHH---------
Q psy5402          72 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIH---------  142 (198)
Q Consensus        72 ~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~---------  142 (198)
                       ++|++||+++|++|++|+++++++++|..+|++++++|+.++|+||+++||||+++|++++.+++.++++         
T Consensus       129 -a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~~~~~~~~  207 (699)
T TIGR02440       129 -TVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKGKPIRKPL  207 (699)
T ss_pred             -cEEechhhcccCCCCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhCCCCCCCc
Confidence             7999999999999999999999999999999999999999999999999999999999999999999998         


Q ss_pred             ----HHhcCCHHH----------------------HHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Q psy5402         143 ----AWAKLPPQS----------------------MIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN  196 (198)
Q Consensus       143 ----~la~~~~~a----------------------~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~  196 (198)
                          +++..+|.+                      ...+|+.++.....+++++++.|.+.+..++.|+|.++++.+|+.
T Consensus       208 ~~~~~~~~~~~~a~~~~~~~~~k~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~  287 (699)
T TIGR02440       208 SLQERLLEGTPLGRALLFDQAAKKTAKKTQGNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFA  287 (699)
T ss_pred             cchhhhcccCchhHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence                677777666                      345566688877778999999999999999999999999999975


Q ss_pred             c
Q psy5402         197 R  197 (198)
Q Consensus       197 k  197 (198)
                      .
T Consensus       288 ~  288 (699)
T TIGR02440       288 T  288 (699)
T ss_pred             H
Confidence            3

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.2e-35  Score=250.42  Aligned_cols=132  Identities=22%  Similarity=0.304  Sum_probs=122.1

Q ss_pred             HHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhhHHHHHh
Q psy5402          19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIF   98 (198)
Q Consensus        19 ~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~v   98 (198)
                      +++++.++.++||||||+|||+|+|||++|+++||+|||+++            ++|++||+++|.+|+.+   .+++++
T Consensus       116 ~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~------------a~f~~pe~~~gg~~~~~---~~~~~v  180 (302)
T PRK08272        116 FVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADD------------AKIGYPPTRVWGVPATG---MWAYRL  180 (302)
T ss_pred             HHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCC------------CEecCcchhcccCChHH---HHHHHh
Confidence            446788899999999999999999999999999999999999            99999999986666532   567889


Q ss_pred             cHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHHHHHhhchhhh
Q psy5402          99 GNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLS  165 (198)
Q Consensus        99 G~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~  165 (198)
                      |.++|++++++|++++|+||+++||||+++|++++.+++.+++++|+..||.+++.+|+.++..+..
T Consensus       181 G~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~~~~a~~~~K~~l~~~~~~  247 (302)
T PRK08272        181 GPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAVPVNQLAMVKLAVNSALLQ  247 (302)
T ss_pred             hHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999987543

>KOG0016|consensus

Probab=100.00  E-value=4.2e-35  Score=237.25  Aligned_cols=185  Identities=40%  Similarity=0.707  Sum_probs=173.1

Q ss_pred             CCCccCchhhhhhhH-----------H---HHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCC
Q psy5402           2 TNNPTDLINEDTDTS-----------I---TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHP   67 (198)
Q Consensus         2 ~s~G~Dl~~~~~~~~-----------~---~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~   67 (198)
                      +|+|.|+..+.....           .   .+..++..+..+|||+||.|||+|+|-|..+...||+++|+++       
T Consensus        65 f~sG~Df~~~~~~~~~d~~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dk-------  137 (266)
T KOG0016|consen   65 FCSGLDFSPFAKALDDDANEESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDK-------  137 (266)
T ss_pred             EeeccccchhhhcCCCcccccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccc-------
Confidence            688999888754321           1   2223788999999999999999999999999999999999988       


Q ss_pred             cccceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcC
Q psy5402          68 VFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL  147 (198)
Q Consensus        68 ~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~  147 (198)
                           ++|..|++.+|..|++|+++.+++++|...|.++++.|++++|+||.+.|||+++++.+.+.+.+...++++++.
T Consensus       138 -----a~F~TPfa~lGq~PEG~Ss~t~p~imG~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l  212 (266)
T KOG0016|consen  138 -----AWFQTPFAKLGQSPEGCSSVTLPKIMGSASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKKIKQYSKL  212 (266)
T ss_pred             -----eEEeccchhcCCCCCcceeeeehHhhchhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHHHHHHhcC
Confidence                 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         148 PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       148 ~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +|.+++.+|+++|......+..+.+.|+..+...|.++|..+++.+|+.|+
T Consensus       213 ~p~sl~~~K~L~rs~~k~~l~~an~~E~~~l~~~W~s~e~~~~~~~~~~~~  263 (266)
T KOG0016|consen  213 SPESLLGMKKLLRSNIKEELIKANEEECNVLLKQWVSAECLARFKQYLSKK  263 (266)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccChHHHHHHHHHhccc
Confidence            999999999999999999999999999999999999999999999999864

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=100.00  E-value=1.2e-34  Score=247.81  Aligned_cols=149  Identities=19%  Similarity=0.156  Sum_probs=126.9

Q ss_pred             CCCCccCchhhhhh----------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCccc
Q psy5402           1 MTNNPTDLINEDTD----------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFV   70 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~----------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~   70 (198)
                      .||+|.|++++...          ....+++++..|..+||||||+|||+|+|||++|+++||+||++++          
T Consensus        85 aFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~----------  154 (360)
T TIGR03200        85 AFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDL----------  154 (360)
T ss_pred             cccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCC----------
Confidence            48999999987541          1123457788899999999999999999999999999999999999          


Q ss_pred             ceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhH------------HHHHH
Q psy5402          71 LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEI------------ERDLW  138 (198)
Q Consensus        71 ~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l------------~~~a~  138 (198)
                        ++|++||+++|++|++|+++++++++|..+|++++++|++++|+||+++||||+++|+.++            ++.+.
T Consensus       155 --A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~sA~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~  232 (360)
T TIGR03200       155 --ANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWSAHKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLD  232 (360)
T ss_pred             --CEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCcHHHHHHcCChheecCchhcCcchhcCcccchHHHHH
Confidence              9999999999999999999999999999999999999999999999999999999998887            55555


Q ss_pred             HHHHHHhcCCHH--HHHHHHHHhhc
Q psy5402         139 PRIHAWAKLPPQ--SMIFAKQLVRV  161 (198)
Q Consensus       139 ~~a~~la~~~~~--a~~~~K~~l~~  161 (198)
                      ++++.+...++.  +++..|.+++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~k~~~~~  257 (360)
T TIGR03200       233 EFGRIVHGEFKAGDELKAGKELIKQ  257 (360)
T ss_pred             HHhHHhcCCCcchhHHHHHHHHHhc
Confidence            555555555544  55555555554

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=100.00  E-value=5.2e-34  Score=234.65  Aligned_cols=153  Identities=20%  Similarity=0.179  Sum_probs=132.1

Q ss_pred             CCCCccCchhhhhh---------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccc
Q psy5402           1 MTNNPTDLINEDTD---------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVL   71 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~---------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~   71 (198)
                      .||+|.|++++...         ....+++++.++.++||||||+|||+|+|||++|+++||+||+++++          
T Consensus        56 ~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~----------  125 (239)
T PLN02267         56 FFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDR----------  125 (239)
T ss_pred             ceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCC----------
Confidence            38999999886421         11245667889999999999999999999999999999999998542          


Q ss_pred             eEEEecccccccccCCchhhhHHHHHhcHHHH-HHHHhcCCCCCHHHHHhcCCcccccCc-hhHHHHHHHHHHHHhcC--
Q psy5402          72 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVA-SELLYTGRKLNAQEALQYGFVSGVFTT-EEIERDLWPRIHAWAKL--  147 (198)
Q Consensus        72 ~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a-~~lll~g~~~~a~eA~~~Glv~~v~~~-~~l~~~a~~~a~~la~~--  147 (198)
                       ++|++||+++|++++.+++.++++++|..++ ++++++|++|+|+||+++||||+++|+ +++.+++.++++++++.  
T Consensus       126 -a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~~llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~~~  204 (239)
T PLN02267        126 -GVLYMSEVDIGLPLPDYFMALLRAKIGSPAARRDVLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAARKW  204 (239)
T ss_pred             -CeEeccccccCCCCChHHHHHHHHHcChHHHHHHHHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhccC
Confidence             8999999999997444457789999999999 699999999999999999999999985 68999999999999987  


Q ss_pred             CHHHHHHHHHHhhchhh
Q psy5402         148 PPQSMIFAKQLVRVPML  164 (198)
Q Consensus       148 ~~~a~~~~K~~l~~~~~  164 (198)
                      ++.++..+|+.++....
T Consensus       205 ~~~~~~~~k~~~~~~~~  221 (239)
T PLN02267        205 NGEVYASIRKSLLPEVC  221 (239)
T ss_pred             cccHHHHHHHHHHHHHH
Confidence            56789999999877543

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=100.00  E-value=1.7e-33  Score=262.03  Aligned_cols=186  Identities=23%  Similarity=0.235  Sum_probs=156.6

Q ss_pred             CCCCccCchhhhhh---h-------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCccc
Q psy5402           1 MTNNPTDLINEDTD---T-------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFV   70 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~---~-------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~   70 (198)
                      .||+|.|++++...   .       ....++++.+|.++||||||+|||+|+|||++|+++||+||++++          
T Consensus        63 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~----------  132 (714)
T TIGR02437        63 AFIVGADITEFLGLFALPDAELIQWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDT----------  132 (714)
T ss_pred             ccccCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCC----------
Confidence            48999999987531   1       123567889999999999999999999999999999999999999          


Q ss_pred             ceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCC--
Q psy5402          71 LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLP--  148 (198)
Q Consensus        71 ~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~--  148 (198)
                        ++|++||+++|++|++|+++++++++|..+|++++++|++++|+||+++||||+++|++++.+.+.++++++....  
T Consensus       133 --a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~~~  210 (714)
T TIGR02437       133 --AKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKLD  210 (714)
T ss_pred             --CEEecchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcCCc
Confidence              9999999999999999999999999999999999999999999999999999999999999999999997744310  


Q ss_pred             ------H-----------HH--HHHHH------------------HHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHH
Q psy5402         149 ------P-----------QS--MIFAK------------------QLVRVPMLSMLHEANKRECKRLEERWESEEFMNAI  191 (198)
Q Consensus       149 ------~-----------~a--~~~~K------------------~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~  191 (198)
                            +           ..  ....+                  +.++.....+++++++.|.+.|.+++.|++.+..+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~~l~  290 (714)
T TIGR02437       211 WKAKRQPKLEPLKLSKIEAMMSFTTAKGMVAQVAGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALI  290 (714)
T ss_pred             ccccCCCCcccccccchHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence                  0           00  11111                  12222333467899999999999999999999999


Q ss_pred             HHHHccC
Q psy5402         192 TAFFNRK  198 (198)
Q Consensus       192 ~af~~kr  198 (198)
                      +.|+.+|
T Consensus       291 ~~ff~~r  297 (714)
T TIGR02437       291 GLFLNDQ  297 (714)
T ss_pred             HHHhhhH
Confidence            9998654

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>KOG1681|consensus

Probab=100.00  E-value=8.1e-35  Score=231.70  Aligned_cols=186  Identities=26%  Similarity=0.329  Sum_probs=173.0

Q ss_pred             CCCCccCchhhhhhh-------------------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCC
Q psy5402           1 MTNNPTDLINEDTDT-------------------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTA   61 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~-------------------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~   61 (198)
                      +||+|.|+..+....                   ...+|+.+..|++||||||++|+|+|+|||+.|..+||+|||+++ 
T Consensus        78 hFcaGIDl~~~~~~~~~~~~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqD-  156 (292)
T KOG1681|consen   78 HFCAGIDLNDMASDRILQPEGDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQD-  156 (292)
T ss_pred             ceecccCcchhhhhhccccccchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeeccc-
Confidence            589999987764331                   125677889999999999999999999999999999999999999 


Q ss_pred             cccCCCcccceEEEecccccccccCCchhhhHHHHHhc-HHHHHHHHhcCCCCCHHHHHhcCCcccccCc-hhHHHHHHH
Q psy5402          62 ILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFG-NSVASELLYTGRKLNAQEALQYGFVSGVFTT-EEIERDLWP  139 (198)
Q Consensus        62 ~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG-~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~-~~l~~~a~~  139 (198)
                                 |.|+.-|+.+|+..+.|...++|..+| .+.++++.+|++.|+|.||++.|||.+|+|+ +++.+.+..
T Consensus       157 -----------AffsvkEVDvglaADvGTL~RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~  225 (292)
T KOG1681|consen  157 -----------AFFSVKEVDVGLAADVGTLNRLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDKEELLNGALP  225 (292)
T ss_pred             -----------ceeeeeeeeeehhhchhhHhhhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHH
Confidence                       999999999999999999999999999 8999999999999999999999999999996 779999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         140 RIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       140 ~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +|+.|+..+|.++..+|..++...+.+.++.+.+-..+....+.+.|..+++.+-++|+
T Consensus       226 mA~~Ia~KSpvaVqgTK~~L~ysrehsv~~sLnyvatwNms~L~s~Dl~~av~a~m~k~  284 (292)
T KOG1681|consen  226 MAELIASKSPVAVQGTKENLLYSREHSVEESLNYVATWNMSMLLSDDLVKAVMAQMEKL  284 (292)
T ss_pred             HHHHhccCCceeeechHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999999999999999999999999988764

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=100.00  E-value=1.3e-32  Score=239.33  Aligned_cols=183  Identities=19%  Similarity=0.213  Sum_probs=146.9

Q ss_pred             CCCCccCchhhhhhh--------HHHH---HHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcc
Q psy5402           1 MTNNPTDLINEDTDT--------SITL---QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVF   69 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~--------~~~~---~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~   69 (198)
                      .||+|+|++++....        ...+   ..+...|.++|||+||+|||+|+|||++|+++||+||++++         
T Consensus        65 ~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~---------  135 (381)
T PLN02988         65 AFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATEN---------  135 (381)
T ss_pred             CcccCcCHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCC---------
Confidence            389999999874211        0112   23456788999999999999999999999999999999999         


Q ss_pred             cceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHH--------
Q psy5402          70 VLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRI--------  141 (198)
Q Consensus        70 ~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a--------  141 (198)
                         ++|++||+++|++|++|++++|+|++|. .++++++||++++|+||+++||+|++||++++.+.+.+++        
T Consensus       136 ---a~f~mPE~~iGl~Pd~G~s~~L~rl~G~-~~~~l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~p~  211 (381)
T PLN02988        136 ---TVFAMPETALGLFPDVGASYFLSRLPGF-FGEYVGLTGARLDGAEMLACGLATHFVPSTRLTALEADLCRIGSNDPT  211 (381)
T ss_pred             ---cEEeChhhhcCcCCCccHHHHHHHHHHH-HHHHHHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHHHhhccCHH
Confidence               9999999999999999999999999997 6889999999999999999999999999877666444433        


Q ss_pred             -----------------------------------------------------------HHHhcCCHHHHHHHHHHhhch
Q psy5402         142 -----------------------------------------------------------HAWAKLPPQSMIFAKQLVRVP  162 (198)
Q Consensus       142 -----------------------------------------------------------~~la~~~~~a~~~~K~~l~~~  162 (198)
                                                                                 +.+.+.+|.++..+.+++++.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~~~~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~  291 (381)
T PLN02988        212 FASTILDAYTQHPRLKPQSAYHRLDVIDRCFSRRTVEEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREG  291 (381)
T ss_pred             HHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCCHHHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence                                                                       122233444555555555555


Q ss_pred             hhhcHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHc
Q psy5402         163 MLSMLHEANKRECKRLEERWE---SEEFMNAITAFFN  196 (198)
Q Consensus       163 ~~~~~~~~~~~e~~~~~~~~~---~~~~~e~~~af~~  196 (198)
                      ...++.+.++.|......+..   ++||.||+++-+-
T Consensus       292 ~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~Li  328 (381)
T PLN02988        292 RLQGVGQCLIREYRMVCHVMKGEISKDFVEGCRAILV  328 (381)
T ss_pred             hcCCHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHhc
Confidence            455778888888888888887   6999999999764

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=100.00  E-value=1.3e-32  Score=256.73  Aligned_cols=186  Identities=19%  Similarity=0.196  Sum_probs=153.5

Q ss_pred             CCCCccCchhhhhh--------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecC-CcccCCCcccc
Q psy5402           1 MTNNPTDLINEDTD--------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDT-AILLNHPVFVL   71 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~--------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~-~~~~~~~~~~~   71 (198)
                      .||+|.|++++...        ....+++++.+|.++||||||+|||+|+|||++|+++||+|||+++ +          
T Consensus        71 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~----------  140 (737)
T TIGR02441        71 SFVAGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRK----------  140 (737)
T ss_pred             cceeCcCHHHHhccCChHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCC----------
Confidence            48999999998521        1134567889999999999999999999999999999999999987 1          


Q ss_pred             eEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCc-------------hhHHHHHH
Q psy5402          72 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTT-------------EEIERDLW  138 (198)
Q Consensus        72 ~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~-------------~~l~~~a~  138 (198)
                       ++|++||+++|++|++|++++|++++|..+|++++++|++++|+||+++||||+|+|+             +++.+.+.
T Consensus       141 -a~fglpEv~lGl~Pg~Ggt~rLprliG~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~  219 (737)
T TIGR02441       141 -TLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAV  219 (737)
T ss_pred             -CeEecchhhhCCCCCccHhhhHHHhhCHHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHH
Confidence             4899999999999999999999999999999999999999999999999999999986             55788888


Q ss_pred             HHHHHHhcCC----------HH--------------HHHHHH------------------HHhhchhhhcHHHHHHHHHH
Q psy5402         139 PRIHAWAKLP----------PQ--------------SMIFAK------------------QLVRVPMLSMLHEANKRECK  176 (198)
Q Consensus       139 ~~a~~la~~~----------~~--------------a~~~~K------------------~~l~~~~~~~~~~~~~~e~~  176 (198)
                      +++++++..+          +.              .+...+                  +.+......+++++++.|.+
T Consensus       220 ~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~  299 (737)
T TIGR02441       220 KFAQGLANGKLSINRDKGLVHKITQYVMTNPFVRQQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESK  299 (737)
T ss_pred             HHHHHhhcccCCccccccccCccchhhcccchhHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            8887765321          00              011111                  22222333467899999999


Q ss_pred             HHHHHhCCHHHHHHHHHHHcc
Q psy5402         177 RLEERWESEEFMNAITAFFNR  197 (198)
Q Consensus       177 ~~~~~~~~~~~~e~~~af~~k  197 (198)
                      .|.+++.|++.+.-++.|+..
T Consensus       300 ~f~~l~~s~~a~al~~~f~~~  320 (737)
T TIGR02441       300 AFGELSMTFESKALIGLFHGQ  320 (737)
T ss_pred             HHHHHhCCHHHHHHHHHHHHH
Confidence            999999999999999998753

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=1.3e-31  Score=234.13  Aligned_cols=183  Identities=21%  Similarity=0.201  Sum_probs=149.9

Q ss_pred             CCCCccCchhhhhh-----------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcc
Q psy5402           1 MTNNPTDLINEDTD-----------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVF   69 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~-----------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~   69 (198)
                      .||+|+|++++...           .+..++++...|.++|||+||+|||+|+|||++|+++||+||++++         
T Consensus        98 aFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~---------  168 (407)
T PLN02851         98 AFCSGADVVSLYHLINEGNVEECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDK---------  168 (407)
T ss_pred             CccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCC---------
Confidence            38999999987431           1123445667788999999999999999999999999999999999         


Q ss_pred             cceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHH--------------
Q psy5402          70 VLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIER--------------  135 (198)
Q Consensus        70 ~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~--------------  135 (198)
                         ++|++||+++|++|++|++++++|+.|.. ++++++||+.+++++|+++||+|+++|++++.+              
T Consensus       169 ---a~famPE~~iGl~PdvG~s~~L~rl~g~~-g~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l~~l~~~l~~~~~~~~~  244 (407)
T PLN02851        169 ---TVFAHPEVQMGFHPDAGASYYLSRLPGYL-GEYLALTGQKLNGVEMIACGLATHYCLNARLPLIEERLGKLLTDDPA  244 (407)
T ss_pred             ---ceEecchhccCCCCCccHHHHHHHhcCHH-HHHHHHhCCcCCHHHHHHCCCceeecCHhhHHHHHHHHHhhccCCHH
Confidence               99999999999999999999999998874 899999999999999999999999998764421              


Q ss_pred             -----------------------------------------------------HHHHHHHHHhcCCHHHHHHHHHHhhch
Q psy5402         136 -----------------------------------------------------DLWPRIHAWAKLPPQSMIFAKQLVRVP  162 (198)
Q Consensus       136 -----------------------------------------------------~a~~~a~~la~~~~~a~~~~K~~l~~~  162 (198)
                                                                           .+.+.++.+.+.||.++..+.+++++.
T Consensus       245 ~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~~sv~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~  324 (407)
T PLN02851        245 VIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGHDTVEEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREG  324 (407)
T ss_pred             HHHHHHHHhccccCCCcccHHHHHHHHHHHhCCCCHHHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence                                                                 011111233455666777777777776


Q ss_pred             hhhcHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHc
Q psy5402         163 MLSMLHEANKRECKRLEERW---ESEEFMNAITAFFN  196 (198)
Q Consensus       163 ~~~~~~~~~~~e~~~~~~~~---~~~~~~e~~~af~~  196 (198)
                      ...++.+.++.|......++   .++||.||+++-+-
T Consensus       325 ~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVRA~LI  361 (407)
T PLN02851        325 RFQTLDQCLAREYRISLCGVSKWVSGDFCEGVRARLV  361 (407)
T ss_pred             hcCCHHHHHHHHHHHHHHHHhcCccchHHHHHHHHhc
Confidence            66788999999988888776   48999999999764

>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

Probab=99.97  E-value=1.7e-31  Score=211.34  Aligned_cols=166  Identities=23%  Similarity=0.319  Sum_probs=146.4

Q ss_pred             HHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhhHHHHHhc
Q psy5402          20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFG   99 (198)
Q Consensus        20 ~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG   99 (198)
                      -++-+.|+.+||||||.|+|+|+|||-.|-+.||+.||+++            |.|+....++|-+-++.++..|+|.||
T Consensus       106 LdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~n------------A~FgQTgp~VGSFD~G~Gs~ylar~VG  173 (282)
T COG0447         106 LDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADN------------AIFGQTGPKVGSFDGGYGSSYLARIVG  173 (282)
T ss_pred             hhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhc------------chhcCCCCCcccccCcccHHHHHHHhh
Confidence            35556788999999999999999999999999999999999            999999999998876666667999999


Q ss_pred             HHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHHHHHhhchhhhcHHHHHHHHHHHHH
Q psy5402         100 NSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLE  179 (198)
Q Consensus       100 ~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~  179 (198)
                      ..+|+++.+.+|.++|+||+++|+||.|||.++|++++.+|++++...||.+++..|..+|...+ .+.-..+..-+...
T Consensus       174 qKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kSP~AlR~LK~Afnad~D-GlaG~q~~ag~at~  252 (282)
T COG0447         174 QKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAREMLAKSPTALRMLKAAFNADCD-GLAGLQELAGNATL  252 (282)
T ss_pred             hhhhHHhhhhhhhccHHHHHhcCceeeeccHHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCc-hhhHHHHhcccceE
Confidence            99999999999999999999999999999999999999999999999999999999999998744 23222233333333


Q ss_pred             HHhCCHHHHHHHHHHHccC
Q psy5402         180 ERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       180 ~~~~~~~~~e~~~af~~kr  198 (198)
                      ..+.+++.+||..+|+|||
T Consensus       253 L~YmTdEa~EGr~AF~eKR  271 (282)
T COG0447         253 LYYMTDEAQEGRDAFLEKR  271 (282)
T ss_pred             EEEechhhhhhHHHHhhcc
Confidence            4567999999999999998

>KOG1682|consensus

Probab=99.97  E-value=2.3e-30  Score=203.40  Aligned_cols=185  Identities=23%  Similarity=0.303  Sum_probs=168.9

Q ss_pred             CCCCccCchhhhhhh--------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccce
Q psy5402           1 MTNNPTDLINEDTDT--------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQ   72 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~--------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~   72 (198)
                      .||+|.||+|+-++.        +....+++..|+++|+||||-|||.|.++||.|...||+++|+.+            
T Consensus        88 ifSaGH~LKELt~e~g~d~haevFqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~------------  155 (287)
T KOG1682|consen   88 IFSAGHNLKELTNEPGSDIHAEVFQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKN------------  155 (287)
T ss_pred             cccccccHHHhhcCccchHHHHHHHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecC------------
Confidence            489999999996654        334457789999999999999999999999999999999999999            


Q ss_pred             EEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHH
Q psy5402          73 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSM  152 (198)
Q Consensus        73 a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~  152 (198)
                      ++|..|...+|++...-+. -+.|.+++..+.+|++||.+++++||+..|||+++||+++++.++.++++.|...++..+
T Consensus       156 SkF~tPG~~vGlFCSTPGv-AlaRavpRkva~~ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~i~~~i~~~srav~  234 (287)
T KOG1682|consen  156 SKFSTPGAGVGLFCSTPGV-ALARAVPRKVAAYMLMTGLPITGEEALISGLVSKVVPAEELDKEIEEITNAIKAKSRAVI  234 (287)
T ss_pred             ccccCCCCceeeEecCcch-hHhhhcchhHHHHHHHhCCCCchHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhhhHHHHH
Confidence            9999999999998765443 488999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         153 IFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       153 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      ...|+........+-.++.....+.+.+.+.-.|.+||+.+|++||
T Consensus       235 slgk~f~y~q~~ms~~ea~~~~~~~m~~n~ql~d~kegiasf~~kr  280 (287)
T KOG1682|consen  235 SLGKEFYYKQLAMSQAEAFSAAQEKMCENFQLGDTKEGIASFFEKR  280 (287)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccchHHHHHHHhccC
Confidence            9999998887777777788888888999999999999999999997

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=99.96  E-value=1.1e-29  Score=201.77  Aligned_cols=131  Identities=34%  Similarity=0.470  Sum_probs=121.5

Q ss_pred             CCCCccCchhhhhh---------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccc
Q psy5402           1 MTNNPTDLINEDTD---------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVL   71 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~---------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~   71 (198)
                      .||+|.|++++...         ....+++++.++..+||||||+|||+|+|+|+.++++||+||++++           
T Consensus        55 ~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~-----------  123 (195)
T cd06558          55 AFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAED-----------  123 (195)
T ss_pred             ceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCC-----------
Confidence            48999999987432         3346678899999999999999999999999999999999999999           


Q ss_pred             eEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHH
Q psy5402          72 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHA  143 (198)
Q Consensus        72 ~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~  143 (198)
                       ++|++||+++|++|+.|.++++++++|...+++++++|+.++++||+++||||+++|.+++.+++.+++++
T Consensus       124 -~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~l~g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~~a~~  194 (195)
T cd06558         124 -AKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEVVPDEELLAAALELARR  194 (195)
T ss_pred             -CEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCeecChhHHHHHHHHHHhh
Confidence             99999999999999999999999999999999999999999999999999999999999999988888875

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=99.96  E-value=1.6e-29  Score=228.04  Aligned_cols=138  Identities=14%  Similarity=0.125  Sum_probs=121.5

Q ss_pred             CCCCccCchhhhhhh-------HH----HHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecC-CcccCCCc
Q psy5402           1 MTNNPTDLINEDTDT-------SI----TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDT-AILLNHPV   68 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~-------~~----~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~-~~~~~~~~   68 (198)
                      .||+|.|++++....       ..    ....+...+.++||||||+|||+|+|||++|+++||+||++++ +       
T Consensus        79 ~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~-------  151 (546)
T TIGR03222        79 VFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRS-------  151 (546)
T ss_pred             CCcCCcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCC-------
Confidence            389999999874311       01    1123456678899999999999999999999999999999985 2       


Q ss_pred             ccceEEEeccccc-ccccCCchhhhHHH--HHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHh
Q psy5402          69 FVLQATFHTPFTL-RGMTPEGCSSVLFP--RIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWA  145 (198)
Q Consensus        69 ~~~~a~~~~pe~~-~Gi~p~~g~~~~l~--~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la  145 (198)
                          ++|++||++ +|++|++|++.++.  +.+|..+|++++++|++++|+||+++||||++||++++.+++.+++++|+
T Consensus       152 ----a~f~~pEv~~lGl~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la  227 (546)
T TIGR03222       152 ----SSVSLPEVPLLGVLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELA  227 (546)
T ss_pred             ----cEEEccchhccCcCCccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHH
Confidence                699999997 99999999988887  68999999999999999999999999999999999999999999999999


Q ss_pred             cCCH
Q psy5402         146 KLPP  149 (198)
Q Consensus       146 ~~~~  149 (198)
                      +.||
T Consensus       228 ~~~p  231 (546)
T TIGR03222       228 AQSD  231 (546)
T ss_pred             hCCC
Confidence            8887

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=99.96  E-value=4.5e-29  Score=225.66  Aligned_cols=139  Identities=14%  Similarity=0.138  Sum_probs=121.7

Q ss_pred             CCCCccCchhhhhhhH-----------HHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecC-CcccCCCc
Q psy5402           1 MTNNPTDLINEDTDTS-----------ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDT-AILLNHPV   68 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~~-----------~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~-~~~~~~~~   68 (198)
                      .||+|.|++++.....           .....+...+.++||||||+|||+|+|||++|+++|||||++++ +       
T Consensus        83 ~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~-------  155 (550)
T PRK08184         83 VFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRS-------  155 (550)
T ss_pred             CCCCccCHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCC-------
Confidence            4899999998643210           01122455778899999999999999999999999999999975 2       


Q ss_pred             ccceEEEeccccc-ccccCCchhhhHHH--HHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHh
Q psy5402          69 FVLQATFHTPFTL-RGMTPEGCSSVLFP--RIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWA  145 (198)
Q Consensus        69 ~~~~a~~~~pe~~-~Gi~p~~g~~~~l~--~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la  145 (198)
                          ++|++||++ +|++|++|++++++  +++|..++++++++|+.++++||+++||||++||++++.+++.+++++|+
T Consensus       156 ----a~fg~pEv~~~Gl~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia  231 (550)
T PRK08184        156 ----SAVSLPEVPLLGVLPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELA  231 (550)
T ss_pred             ----cEEEccchhccccCCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHH
Confidence                789999997 99999999988888  77999999999999999999999999999999999999999999999999


Q ss_pred             cCCHH
Q psy5402         146 KLPPQ  150 (198)
Q Consensus       146 ~~~~~  150 (198)
                      ..||.
T Consensus       232 ~~~~~  236 (550)
T PRK08184        232 AASDR  236 (550)
T ss_pred             hCCCC
Confidence            88864

>KOG1684|consensus

Probab=99.91  E-value=3.4e-24  Score=180.68  Aligned_cols=182  Identities=18%  Similarity=0.198  Sum_probs=159.9

Q ss_pred             CCCccCchhhhhh-----------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCccc
Q psy5402           2 TNNPTDLINEDTD-----------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFV   70 (198)
Q Consensus         2 ~s~G~Dl~~~~~~-----------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~   70 (198)
                      ||+|+|++.....           .+...+.+...|.++.||.||.+||..+|||+.|++..-||||+++          
T Consensus        96 FCAGgDI~~~ae~~~d~~~~~~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATer----------  165 (401)
T KOG1684|consen   96 FCAGGDIKAVAESIKDKETPEVKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATER----------  165 (401)
T ss_pred             eecCccHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeecc----------
Confidence            8999998754322           2334456778899999999999999999999999999999999999          


Q ss_pred             ceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHH---------------
Q psy5402          71 LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIER---------------  135 (198)
Q Consensus        71 ~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~---------------  135 (198)
                        +.|.+||+.+|++|+.|+++.++|+.| ....++.+||+++++.+|+..||.++-||.+.+..               
T Consensus       166 --T~~AmPEt~IGlfPDVG~Sy~lsrlpg-~lg~YLgLTG~rl~GaD~~~~GlATHyv~S~~l~~Lee~L~~~l~~dp~~  242 (401)
T KOG1684|consen  166 --TVFAMPETGIGLFPDVGASYFLSRLPG-YLGLYLGLTGQRLSGADALRCGLATHYVPSEKLPSLEERLLKNLNDDPQS  242 (401)
T ss_pred             --ceecccccccccccCccceeehhhCcc-HHHHhhhhccceecchHHHHhcchhhccchhhhhHHHHHHhhhcCCCcHH
Confidence              999999999999999999999999877 78889999999999999999999999888755432               


Q ss_pred             ------------------------------------------------------HHHHHHHHHhcCCHHHHHHHHHHhhc
Q psy5402         136 ------------------------------------------------------DLWPRIHAWAKLPPQSMIFAKQLVRV  161 (198)
Q Consensus       136 ------------------------------------------------------~a~~~a~~la~~~~~a~~~~K~~l~~  161 (198)
                                                                            .|.+.+++|.+.+|.++..+-+.++.
T Consensus       243 ~I~~~l~~y~~~~~~~~~~~~~~~~~i~~~Fs~~tVeeIie~lk~~q~~~~~~ewak~tlk~L~k~SPtSLkvT~r~i~e  322 (401)
T KOG1684|consen  243 VINETLEKYASPAKDESFSLSLKLDVINKCFSANTVEEIIEALKNYQQSADGSEWAKETLKTLKKMSPTSLKVTLRQIRE  322 (401)
T ss_pred             HHHHHHHHhcccCCCccccchhhHHHHHHhhccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCchHHHHHHHHHh
Confidence                                                                  34455667778899999999999999


Q ss_pred             hhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Q psy5402         162 PMLSMLHEANKRECKRLEERWESEEFMNAITAFFN  196 (198)
Q Consensus       162 ~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~  196 (198)
                      ....++++.+..|...-.....++||.||++|-+-
T Consensus       323 gs~~tl~~~l~~Eyr~s~~~~~~~DF~EGvRA~LI  357 (401)
T KOG1684|consen  323 GSKQTLDQCLTMEYRLSLRMLMRGDFCEGVRAVLI  357 (401)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhccchhhhhhheee
Confidence            98899999999999998999999999999999764

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.84  E-value=1.2e-20  Score=149.93  Aligned_cols=105  Identities=17%  Similarity=0.195  Sum_probs=90.3

Q ss_pred             HHHHHHHhcCCCcEEEEEc---CccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCc--------
Q psy5402          20 QKYVAAFIDYPKPLIAIVN---GPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG--------   88 (198)
Q Consensus        20 ~~~~~~i~~~~kp~IA~v~---G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~--------   88 (198)
                      .+++.+|..+||||||+||   |+|+|||+.++++||+++++++            ++|+.++...+..+..        
T Consensus        48 ~~i~~~l~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~------------a~~g~~~~~~~~~~~~~~~~~~~~  115 (187)
T cd07020          48 REIVQAILASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPG------------TNIGAAHPVAIGGGGGSDPVMEKK  115 (187)
T ss_pred             HHHHHHHHhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCC------------CcEEeccccccCCCCcchHHHHHH
Confidence            4567788899999999999   9999999999999999999999            9999999985544432        


Q ss_pred             ------hhhhHHHHHhcH--HHHHHHHhcCCCCCHHHHHhcCCcccccCch-hHHHH
Q psy5402          89 ------CSSVLFPRIFGN--SVASELLYTGRKLNAQEALQYGFVSGVFTTE-EIERD  136 (198)
Q Consensus        89 ------g~~~~l~~~vG~--~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~-~l~~~  136 (198)
                            +....+++..|.  ..+++++++|+.|+++||+++||||++++++ ++.+.
T Consensus       116 ~~~~~~~~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~~  172 (187)
T cd07020         116 ILNDAVAYIRSLAELRGRNAEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLKK  172 (187)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHHH
Confidence                  234568888887  6899999999999999999999999999876 55543

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>cd07014 S49_SppA Signal peptide peptidase A

Probab=99.79  E-value=5e-19  Score=139.37  Aligned_cols=118  Identities=13%  Similarity=0.033  Sum_probs=95.9

Q ss_pred             CCCccCchhhhhhhHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEeccccc
Q psy5402           2 TNNPTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTL   81 (198)
Q Consensus         2 ~s~G~Dl~~~~~~~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~   81 (198)
                      +|.|+|+.+.     ..+.+++.++..++|||||++||.|.|+|+.|+++||+++++++            ++|+++.+.
T Consensus        48 ~~~gg~~~~~-----~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~D~i~a~~~------------a~~~~~G~~  110 (177)
T cd07014          48 NSPGGSVTAS-----EVIRAELAAARAAGKPVVASGGGNAASGGYWISTPANYIVANPS------------TLVGSIGIF  110 (177)
T ss_pred             eCCCcCHHHH-----HHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhCCEEEECCC------------CeEEEechH
Confidence            5778887653     24566788888999999999999999999999999999999999            999999887


Q ss_pred             ccccCCchhhh--------HHHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHH
Q psy5402          82 RGMTPEGCSSV--------LFPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERD  136 (198)
Q Consensus        82 ~Gi~p~~g~~~--------~l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~  136 (198)
                      .+..+......        .+++..|  ....++++..|..++|++|++.||||++.+.+++.+.
T Consensus       111 ~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~v~~~~e~~~~  175 (177)
T cd07014         111 GVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLGSFDDAVAK  175 (177)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcccCCCHHHHHHH
Confidence            76443322222        3444445  7778899999999999999999999999998877653

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.63  E-value=1.8e-15  Score=117.17  Aligned_cols=96  Identities=18%  Similarity=0.148  Sum_probs=80.1

Q ss_pred             HHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchh---------
Q psy5402          20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCS---------   90 (198)
Q Consensus        20 ~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~---------   90 (198)
                      ..+++.|..+|||||+.++|.|.|+|+.++++||+|+++++            ++|+++....+..+....         
T Consensus        48 ~~i~~~i~~~~~pvi~~v~g~a~s~g~~ia~a~d~~~~~~~------------a~~~~~~~~~~~~g~~~~~~~~~~~l~  115 (160)
T cd07016          48 LAIYNALKRHKGKVTVKIDGLAASAASVIAMAGDEVEMPPN------------AMLMIHNPSTGAAGNADDLRKAADLLD  115 (160)
T ss_pred             HHHHHHHHhcCCCEEEEEcchHHhHHHHHHhcCCeEEECCC------------cEEEEECCccccCcCHHHHHHHHHHHH
Confidence            45788888999999999999999999999999999999999            999998776665443221         


Q ss_pred             ------hhHHHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccc
Q psy5402          91 ------SVLFPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGV  127 (198)
Q Consensus        91 ------~~~l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v  127 (198)
                            ...+.+..|  .....+++..+..++++||+++||||+|
T Consensus       116 ~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA~~~GliD~v  160 (160)
T cd07016         116 KIDESIANAYAEKTGLSEEEISALMDAETWLTAQEAVELGFADEI  160 (160)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHHHHcCCCCcC
Confidence                  223667778  6777788888888999999999999986

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.52  E-value=1.8e-14  Score=116.58  Aligned_cols=56  Identities=13%  Similarity=0.132  Sum_probs=48.6

Q ss_pred             CCCCccCchhhhhhhHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCC
Q psy5402           1 MTNNPTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTA   61 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~   61 (198)
                      ++|.|+|+.+..     .+.+.+..+..++|||||+++|+|.|+|+.|+++||+++++++.
T Consensus        46 ~~s~Gg~~~~~~-----~~~~~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a  101 (211)
T cd07019          46 VNSPGGSVTASE-----VIRAELAAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPST  101 (211)
T ss_pred             EcCCCcCHHHHH-----HHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCC
Confidence            378999987752     34566788889999999999999999999999999999999993

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=99.52  E-value=2e-14  Score=131.71  Aligned_cols=127  Identities=17%  Similarity=0.144  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEeccc------ccccccCCchh
Q psy5402          17 ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPF------TLRGMTPEGCS   90 (198)
Q Consensus        17 ~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe------~~~Gi~p~~g~   90 (198)
                      +.+.+.+.++...+|||||.++|.|.+||+.++++||.++|+++++.|++.|      |+.+.      .++|+.++...
T Consensus       365 e~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv------~~~~~~~~~~l~klGi~~~~~~  438 (584)
T TIGR00705       365 EIIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGV------FSVLPTFENSLDRIGVHVDGVS  438 (584)
T ss_pred             HHHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEE------EEEccCHHHHHHhcCCceEEEe
Confidence            4556667777788999999999999999999999999999999977777753      44442      68999987666


Q ss_pred             hhHHHH----------------------------HhcHHH-----HHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHH
Q psy5402          91 SVLFPR----------------------------IFGNSV-----ASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDL  137 (198)
Q Consensus        91 ~~~l~~----------------------------~vG~~~-----a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a  137 (198)
                      +..++.                            .|+..+     +.+.+.+|+.++++||+++||||++-   .+ +++
T Consensus       439 t~~~~~~s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig---~~-~~A  514 (584)
T TIGR00705       439 THELANVSLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALG---GL-DEA  514 (584)
T ss_pred             ccCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCC---CH-HHH
Confidence            555443                            666666     77888999999999999999999993   44 667


Q ss_pred             HHHHHHHhcC-CHHHHH
Q psy5402         138 WPRIHAWAKL-PPQSMI  153 (198)
Q Consensus       138 ~~~a~~la~~-~~~a~~  153 (198)
                      .+.+.+++.. ++.++.
T Consensus       515 i~~a~~la~~~~~~~v~  531 (584)
T TIGR00705       515 VAKAAKLAHCREQWSVE  531 (584)
T ss_pred             HHHHHHHcCCCCCceEE
Confidence            8888888888 554443

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=99.43  E-value=7.4e-13  Score=102.35  Aligned_cols=97  Identities=23%  Similarity=0.231  Sum_probs=74.8

Q ss_pred             HHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCch---------
Q psy5402          19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC---------   89 (198)
Q Consensus        19 ~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g---------   89 (198)
                      ..++...|..++||||+.++|.|.++|+.|+++||.|++.++            +.|++.....+.....+         
T Consensus        46 ~~~i~~~l~~~~kpvva~~~g~~~s~g~~la~~~d~~~~~~~------------a~~~~~g~~~~~~~~~~~~~~~~~~~  113 (161)
T cd00394          46 GMNIVDALQASRKPVIAYVGGQAASAGYYIATAANKIVMAPG------------TRVGSHGPIGGYGGNGNPTAQEADQR  113 (161)
T ss_pred             HHHHHHHHHHhCCCEEEEECChhHHHHHHHHhCCCEEEECCC------------CEEEEeeeEEecCCCCChHHHHHHHH
Confidence            456777888899999999999999999999999999999999            99999888765543220         


Q ss_pred             -hh---hHHHHHh------cHHHHHHHHhcCCCCCHHHHHhcCCcccc
Q psy5402          90 -SS---VLFPRIF------GNSVASELLYTGRKLNAQEALQYGFVSGV  127 (198)
Q Consensus        90 -~~---~~l~~~v------G~~~a~~lll~g~~~~a~eA~~~Glv~~v  127 (198)
                       .-   ..+...+      ......+.+..+..++++||+++||||+|
T Consensus       114 ~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a~eA~~~GLvD~i  161 (161)
T cd00394         114 IILYFIARFISLVAENRGQTTEKLEEDIEKDLVLTAQEALEYGLVDAL  161 (161)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEEcHHHHHHcCCcCcC
Confidence             00   1111112      22345677888999999999999999985

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.29  E-value=1.7e-11  Score=99.31  Aligned_cols=39  Identities=26%  Similarity=0.279  Sum_probs=33.7

Q ss_pred             HHHHHhcC--CCcEEEEEcCccchHHHHHhhhcCEEEeecC
Q psy5402          22 YVAAFIDY--PKPLIAIVNGPAIGISATTLALCDIVFASDT   60 (198)
Q Consensus        22 ~~~~i~~~--~kp~IA~v~G~a~GgG~~lalacD~~ia~~~   60 (198)
                      +...+..+  +|||||+++|.|.|+|+.++++||+++++++
T Consensus        63 l~~~l~~~~~~KpViA~v~g~a~s~gy~lA~~aD~i~a~~~  103 (214)
T cd07022          63 LADAIRAARAGKPIVAFVNGLAASAAYWIASAADRIVVTPT  103 (214)
T ss_pred             HHHHHHHHhcCCCEEEEECCchhhHHHHHHhcCCEEEEcCC
Confidence            33444444  5999999999999999999999999999999

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.29  E-value=9.4e-12  Score=100.31  Aligned_cols=54  Identities=15%  Similarity=0.137  Sum_probs=46.7

Q ss_pred             CCCccCchhhhhhhHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecC
Q psy5402           2 TNNPTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDT   60 (198)
Q Consensus         2 ~s~G~Dl~~~~~~~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~   60 (198)
                      .|.|+|+...     ..+.+.+..+..++|||||+++|.|.|+|+.++++||+++++++
T Consensus        43 ~s~Gg~~~~~-----~~i~~~i~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~   96 (208)
T cd07023          43 NSPGGSVVAS-----EEIYREIRRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPT   96 (208)
T ss_pred             ECCCCCHHHH-----HHHHHHHHHHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCC
Confidence            4778887652     34566778888899999999999999999999999999999998

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.29  E-value=1.6e-11  Score=96.87  Aligned_cols=105  Identities=23%  Similarity=0.289  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCc----hhhh
Q psy5402          17 ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG----CSSV   92 (198)
Q Consensus        17 ~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~----g~~~   92 (198)
                      .....++..|..+|+|||+.|+|.|.++|+.++++||+++++++            +.|+.+..-.+-..+.    -...
T Consensus        45 ~~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~------------a~iG~~~~v~~~~~~~~~~K~~~~  112 (178)
T cd07021          45 DSALEIVDLILNSPIPTIAYVNDRAASAGALIALAADEIYMAPG------------ATIGAAEPIPGDGNGAADEKVQSY  112 (178)
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCCeEEECCC------------CeEecCeeEcCCCccchhHHHHHH
Confidence            34667889999999999999999999999999999999999999            9999885442211000    0011


Q ss_pred             H------HHHHhc--HHHHHHHHhcC-------------CCCCHHHHHhcCCcccccCc-hhH
Q psy5402          93 L------FPRIFG--NSVASELLYTG-------------RKLNAQEALQYGFVSGVFTT-EEI  133 (198)
Q Consensus        93 ~------l~~~vG--~~~a~~lll~g-------------~~~~a~eA~~~Glv~~v~~~-~~l  133 (198)
                      .      +.+.-|  ...+..|+-..             -.++++||+++|++|.+.++ +++
T Consensus       113 ~~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~~~~l  175 (178)
T cd07021         113 WRAKMRAAAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSLDEL  175 (178)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECCHHHH
Confidence            1      111223  33444555443             26999999999999999874 444

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=99.28  E-value=4.5e-11  Score=96.40  Aligned_cols=120  Identities=16%  Similarity=0.132  Sum_probs=72.7

Q ss_pred             HHHHHHHHhcCC--CcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCC---------
Q psy5402          19 LQKYVAAFIDYP--KPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPE---------   87 (198)
Q Consensus        19 ~~~~~~~i~~~~--kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~---------   87 (198)
                      ..++...|.+++  |||||.++|.|.|+|+.|+++||.++++++..-+...+....-.|.-..-++|+-+.         
T Consensus        48 ~~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~  127 (207)
T TIGR00706        48 SEEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKD  127 (207)
T ss_pred             HHHHHHHHHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcC
Confidence            456677777777  999999999999999999999999999999322222210000000000122333210         


Q ss_pred             c---------hhhhHHHHH-----------------hcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHH
Q psy5402          88 G---------CSSVLFPRI-----------------FGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWP  139 (198)
Q Consensus        88 ~---------g~~~~l~~~-----------------vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~  139 (198)
                      .         ..-..+...                 +..... +-++.|+.|++++|++.||||++...+++.+.+.+
T Consensus       128 ~~~~~~~~s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~-~~~~~~~~~~~~~A~~~gLvD~i~~~~~~~~~~~~  204 (207)
T TIGR00706       128 IGSPTRELTPEERDILQNLVNESYEQFVQVVAKGRNLPVEDV-KKFADGRVFTGRQALKLRLVDKLGTEDDALKWLAE  204 (207)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH-HHHhcCCcccHHHHHHcCCCcccCCHHHHHHHHHH
Confidence            0         000011111                 111122 24578999999999999999999877776655443

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=98.97  E-value=6.9e-09  Score=81.38  Aligned_cols=100  Identities=16%  Similarity=0.204  Sum_probs=75.9

Q ss_pred             HHHHHHHHhcCCCcEEEEEc---CccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCC----c-h-
Q psy5402          19 LQKYVAAFIDYPKPLIAIVN---GPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPE----G-C-   89 (198)
Q Consensus        19 ~~~~~~~i~~~~kp~IA~v~---G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~----~-g-   89 (198)
                      ...+++.|...++||++.|+   |.|..+|..++++||.+++.++            +.++......|..+.    . - 
T Consensus        47 ~~~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~a~~~i~m~p~------------s~iG~~~pi~~~g~~~~~~~~~~  114 (172)
T cd07015          47 AGNIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPG------------TSIGACRPILGYSQNGSIIEAPP  114 (172)
T ss_pred             HHHHHHHHHhcCcCEEEEEecCCCeehhHHHHHHHhcCceEECCC------------CEEEEccccccCCCCCccccchH
Confidence            45677888889999999999   9999999999999999999999            888877765332110    0 0 


Q ss_pred             --hhhH------HHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccccCc
Q psy5402          90 --SSVL------FPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGVFTT  130 (198)
Q Consensus        90 --~~~~------l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~  130 (198)
                        ....      +.+.-|  ...+..++-....++++||+++|++|.++++
T Consensus       115 ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~  165 (172)
T cd07015         115 KITNYFIAYIKSLAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARD  165 (172)
T ss_pred             HHHHHHHHHHHHHHHHHCcCHHHHHHHHHhhcCcCHHHHHHcCCceeeeCC
Confidence              0111      122223  3556678888888999999999999999875

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=98.88  E-value=3.7e-09  Score=86.11  Aligned_cols=118  Identities=18%  Similarity=0.146  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCC---------
Q psy5402          17 ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPE---------   87 (198)
Q Consensus        17 ~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~---------   87 (198)
                      +.+.+.+..+...+|||||.++| |.+||+.++++||.+++.++.+-+.+.++.....|.-..-++|+-+.         
T Consensus        65 ~el~~~i~~~~~~~kpVia~~~~-~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~  143 (222)
T cd07018          65 EELRQALERFRASGKPVIAYADG-YSQGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKS  143 (222)
T ss_pred             HHHHHHHHHHHHhCCeEEEEeCC-CCchhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEecccc
Confidence            34566677777789999999998 88999999999999999999322222221111111000111222221         


Q ss_pred             chhhh-----------HHHH-----------Hh------cHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHH
Q psy5402          88 GCSSV-----------LFPR-----------IF------GNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERD  136 (198)
Q Consensus        88 ~g~~~-----------~l~~-----------~v------G~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~  136 (198)
                      .+..+           .+..           .|      .... .+-+..|+.+++++|++.||||++...+++.+.
T Consensus       144 ~~~~~~~~~~s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~~~~~~~~~A~~~GLvD~i~~~~e~~~~  219 (222)
T cd07018         144 AVEPFTRDDMSPEAREQTQALLDSLWDQYLADVAASRGLSPDA-LEALIDLGGDSAEEALEAGLVDGLAYRDELEAR  219 (222)
T ss_pred             ccchhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH-HHHHHHcCCcHHHHHHHCCCCCcCCcHHHHHHH
Confidence            01000           0011           11      1112 234456999999999999999999877776554

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=98.83  E-value=3.3e-08  Score=76.86  Aligned_cols=97  Identities=15%  Similarity=0.151  Sum_probs=66.5

Q ss_pred             HHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcC--EEEeecCCcccCCCcccceEEEecccccccccCCchhhh----
Q psy5402          19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCD--IVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSV----   92 (198)
Q Consensus        19 ~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD--~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~----   92 (198)
                      -..+++.|...++|+++.+.|.|.++|..++++||  .|++.++            +++.+....-+......-..    
T Consensus        47 ~~~i~~~i~~~~~~v~~~~~g~aaS~~~~i~~a~~~g~r~~~p~------------a~~~ih~~~~~~~g~~~d~~~~~~  114 (162)
T cd07013          47 GMAIYDTIKFIKADVVTIIDGLAASMGSVIAMAGAKGKRFILPN------------AMMMIHQPWGGTLGDATDMRIYAD  114 (162)
T ss_pred             HHHHHHHHHhcCCCceEEEEeehhhHHHHHHHcCCCCcEEEecC------------EEEEEccCcccccCCHHHHHHHHH
Confidence            44577788889999999999999999999999999  5888888            77765443222111100000    


Q ss_pred             -----------HHHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccc
Q psy5402          93 -----------LFPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGV  127 (198)
Q Consensus        93 -----------~l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v  127 (198)
                                 .+.+.-|  .....+++-.+..++|+||+++||||++
T Consensus       115 ~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~eA~~~GliD~i  162 (162)
T cd07013         115 LLLKVEGNLVSAYAHKTGQSEEELHADLERDTWLSAREAVEYGFADTI  162 (162)
T ss_pred             HHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCccccHHHHHHcCCCCcC
Confidence                       1111112  3333566667777899999999999985

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.78  E-value=3.1e-08  Score=79.59  Aligned_cols=99  Identities=18%  Similarity=0.162  Sum_probs=66.7

Q ss_pred             HHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcC--EEEeecCCcccCCCcccceEEEecccccccccCCchh-------
Q psy5402          20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCD--IVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCS-------   90 (198)
Q Consensus        20 ~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD--~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~-------   90 (198)
                      ..++..|...+.|+++.++|.|.+.|..++++++  .|++.++            +++.+....-|......-       
T Consensus        79 ~~I~d~i~~~~~~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~------------s~imih~p~~~~~G~a~di~~~a~~  146 (200)
T PRK00277         79 LAIYDTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPN------------SRIMIHQPLGGFQGQATDIEIHARE  146 (200)
T ss_pred             HHHHHHHHhcCCCEEEEEEeEeccHHHHHHhcCCCCCEEEcCC------------ceEEeccCcccccCChhHHHHHHHH
Confidence            3466777888899999999999999999988753  4666666            666554433221110000       


Q ss_pred             --------hhHHHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccccCc
Q psy5402          91 --------SVLFPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGVFTT  130 (198)
Q Consensus        91 --------~~~l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~  130 (198)
                              ...+....|  .....+++-.+..++|+||+++||||+|++.
T Consensus       147 l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~~  196 (200)
T PRK00277        147 ILKLKKRLNEILAEHTGQPLEKIEKDTDRDNFMSAEEAKEYGLIDEVLTK  196 (200)
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHhhCCccccHHHHHHcCCccEEeec
Confidence                    011223333  3444566667788999999999999999864

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional

Probab=98.77  E-value=1.5e-07  Score=78.14  Aligned_cols=106  Identities=25%  Similarity=0.318  Sum_probs=72.8

Q ss_pred             CCccCchhhh--hhhHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccc
Q psy5402           3 NNPTDLINED--TDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFT   80 (198)
Q Consensus         3 s~G~Dl~~~~--~~~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~   80 (198)
                      |.|..+....  ......+.+.+..+...++|+|+.|-|.|.|||......||++++.++            +.++.   
T Consensus       107 tpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~~~gGgA~a~~~~D~v~m~~~------------a~~~v---  171 (256)
T PRK12319        107 TAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVADQVWMLEN------------TMYAV---  171 (256)
T ss_pred             CCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCcCcHHHHHhhcCCEEEEecC------------ceEEE---
Confidence            4555543322  223456777788888999999999999999999888889999999999            76643   


Q ss_pred             cccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCc
Q psy5402          81 LRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTT  130 (198)
Q Consensus        81 ~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~  130 (198)
                         +.|.++....+...--...+.+.    ..+++.++.+.|+||+|+|+
T Consensus       172 ---~~pe~~a~il~~~~~~a~~aa~~----~~~~a~~l~~~g~iD~ii~e  214 (256)
T PRK12319        172 ---LSPEGFASILWKDGSRATEAAEL----MKITAGELLEMGVVDKVIPE  214 (256)
T ss_pred             ---cCHHHHHHHHhcCcccHHHHHHH----cCCCHHHHHHCCCCcEecCC
Confidence               22333333333221111222223    27799999999999999974

>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional

Probab=98.65  E-value=8.1e-07  Score=75.75  Aligned_cols=106  Identities=12%  Similarity=0.240  Sum_probs=73.8

Q ss_pred             CCccCchhhhh--hhHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccc
Q psy5402           3 NNPTDLINEDT--DTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFT   80 (198)
Q Consensus         3 s~G~Dl~~~~~--~~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~   80 (198)
                      +.|.++.....  .....+.+.+..+....+|+|+.|-|.|.|||......||++++.++            +.++.   
T Consensus       163 TpGA~~G~~AE~~G~~~aiar~l~~~a~~~VP~IsVViGeggsGGAlal~~aD~V~m~e~------------a~~sV---  227 (322)
T CHL00198        163 TPGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTIIGEGGSGGALGIGIGDSIMMLEY------------AVYTV---  227 (322)
T ss_pred             CCCcCcCHHHHHHhHHHHHHHHHHHHHcCCCCEEEEEeCcccHHHHHhhhcCCeEEEeCC------------eEEEe---
Confidence            45655533222  22345667777788999999999999999888765566999999999            77653   


Q ss_pred             cccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCc
Q psy5402          81 LRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTT  130 (198)
Q Consensus        81 ~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~  130 (198)
                         +.|.++++.++..   ..+|.+ ....-.++|++.+++|+||+|+|.
T Consensus       228 ---isPEg~a~Il~~d---~~~a~~-aA~~~~ita~dL~~~giiD~ii~E  270 (322)
T CHL00198        228 ---ATPEACAAILWKD---SKKSLD-AAEALKITSEDLKVLGIIDEIIPE  270 (322)
T ss_pred             ---cCHHHHHHHHhcc---hhhHHH-HHHHcCCCHHHHHhCCCCeEeccC
Confidence               2344444443332   333333 334568999999999999999974

>PRK10949 protease 4; Provisional

Probab=98.65  E-value=3.9e-08  Score=90.88  Aligned_cols=126  Identities=17%  Similarity=0.170  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhh-----
Q psy5402          17 ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSS-----   91 (198)
Q Consensus        17 ~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~-----   91 (198)
                      +.+.+.+.++....|||||.+.|.|.-||+.++++||.++|.+.++.|++.|+-..-.+.-.--++|+......+     
T Consensus       383 e~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~  462 (618)
T PRK10949        383 EVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLAD  462 (618)
T ss_pred             HHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCC
Confidence            345566666677789999999999999999999999999999998888887621111111111234443321111     


Q ss_pred             ------------hHHHHH-----------h------cHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHH
Q psy5402          92 ------------VLFPRI-----------F------GNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIH  142 (198)
Q Consensus        92 ------------~~l~~~-----------v------G~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~  142 (198)
                                  ..+...           |      .... .+-+..|+.+++++|++.||||++-.-++..    +.++
T Consensus       463 ~~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~-v~~ia~Grv~tg~~A~~~GLVD~lG~~~~ai----~~a~  537 (618)
T PRK10949        463 VSITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQ-IDKIAQGHVWTGQDAKANGLVDSLGDFDDAV----AKAA  537 (618)
T ss_pred             ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHH-HHHHhcCCcccHHHHHHcCCCccCCCHHHHH----HHHH
Confidence                        011111           1      1111 2346799999999999999999996544433    3444


Q ss_pred             HHhcC
Q psy5402         143 AWAKL  147 (198)
Q Consensus       143 ~la~~  147 (198)
                      +++..
T Consensus       538 ~~a~~  542 (618)
T PRK10949        538 ELAKL  542 (618)
T ss_pred             HHcCC
Confidence            45544

>PRK11778 putative inner membrane peptidase; Provisional

Probab=98.61  E-value=1.3e-07  Score=81.12  Aligned_cols=116  Identities=21%  Similarity=0.228  Sum_probs=74.9

Q ss_pred             HHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCC---------ch----
Q psy5402          23 VAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPE---------GC----   89 (198)
Q Consensus        23 ~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~---------~g----   89 (198)
                      +.++....||+++.+++.|.-||+.++++||-+++.+..+.|++.|+-..-.|.--.-++|+-+.         .+    
T Consensus       147 l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~  226 (330)
T PRK11778        147 LQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFG  226 (330)
T ss_pred             HHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCC
Confidence            55677788999999999999999999999999999999887777752211111100012222110         00    


Q ss_pred             -hh---------------hHHHHHhcHHH---HHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHH
Q psy5402          90 -SS---------------VLFPRIFGNSV---ASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLW  138 (198)
Q Consensus        90 -~~---------------~~l~~~vG~~~---a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~  138 (198)
                       .+               ..|...|-..+   ..+-+.+|+.+++++|++.||||++-..+++...+.
T Consensus       227 ~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~i~~~~  294 (330)
T PRK11778        227 ENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLELM  294 (330)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHHHHHHH
Confidence             00               01111121111   134567899999999999999999988777654333

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.59  E-value=3.2e-07  Score=74.07  Aligned_cols=98  Identities=18%  Similarity=0.115  Sum_probs=73.5

Q ss_pred             HHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcC--EEEeecCCcccCCCcccceEEEecccccc-cccCCchhh----
Q psy5402          19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCD--IVFASDTAILLNHPVFVLQATFHTPFTLR-GMTPEGCSS----   91 (198)
Q Consensus        19 ~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD--~~ia~~~~~~~~~~~~~~~a~~~~pe~~~-Gi~p~~g~~----   91 (198)
                      -..++..|..++.||++.+.|.|.+.|..++++||  .|++.++            ++|.+..... |..  .|..    
T Consensus        82 g~~I~d~i~~~~~~v~t~~~G~aaSaa~lI~~ag~~~~R~~~p~------------s~imiH~p~~~~~~--~G~a~d~~  147 (207)
T PRK12553         82 GDAIYDTIQFIRPDVQTVCTGQAASAGAVLLAAGTPGKRFALPN------------ARILIHQPSLGGGI--RGQASDLE  147 (207)
T ss_pred             HHHHHHHHHhcCCCcEEEEEeehhhHHHHHHHcCCcCcEEECCC------------chhhhcCccccCCC--ccCHHHHH
Confidence            34567888888999999999999999999999999  5899999            8888776543 211  1111    


Q ss_pred             --------------hHHHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccccCc
Q psy5402          92 --------------VLFPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGVFTT  130 (198)
Q Consensus        92 --------------~~l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~  130 (198)
                                    ..+....|  .....+++-.+..++|+||+++||||+|+++
T Consensus       148 ~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~  202 (207)
T PRK12553        148 IQAREILRMRERLERILAEHTGQSVEKIRKDTDRDKWLTAEEAKDYGLVDQIITS  202 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCccccHHHHHHcCCccEEcCc
Confidence                          11223233  3445567778899999999999999999874

>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional

Probab=98.57  E-value=1.4e-06  Score=76.41  Aligned_cols=93  Identities=18%  Similarity=0.318  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhhHHH
Q psy5402          16 SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFP   95 (198)
Q Consensus        16 ~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~   95 (198)
                      ...+.+.+..+....+|+|+.|-|.+.+||.....+||++++.++            +.++.      +.|.++++.++.
T Consensus       245 a~aIAr~l~ams~l~VPiISVViGeGgSGGAlalg~aD~VlMle~------------A~ysV------isPEgaAsILwk  306 (431)
T PLN03230        245 GEAIAFNLREMFGLRVPIIATVIGEGGSGGALAIGCGNRMLMMEN------------AVYYV------ASPEACAAILWK  306 (431)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHHhhcCCEEEEecC------------CEEEe------cCHHHHHHHHhc
Confidence            345667788889999999999999997777655557999999999            76543      234444444443


Q ss_pred             HHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCc
Q psy5402          96 RIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTT  130 (198)
Q Consensus        96 ~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~  130 (198)
                      ...-...|.+    .-.++|+++++.|+||+|+|.
T Consensus       307 d~~~A~eAAe----alkitA~dL~~~GiID~II~E  337 (431)
T PLN03230        307 SAAAAPKAAE----ALRITAAELVKLGVVDEIVPE  337 (431)
T ss_pred             cccchHHHHH----HcCCCHHHHHhCCCCeEeccC
Confidence            3222222333    338999999999999999974

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=98.57  E-value=6e-07  Score=71.97  Aligned_cols=103  Identities=17%  Similarity=0.113  Sum_probs=70.6

Q ss_pred             HHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCE--EEeecCCcccCCCcccceEEEecccccccccCCchhh------
Q psy5402          20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDI--VFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSS------   91 (198)
Q Consensus        20 ~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~--~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~------   91 (198)
                      ..++..|...+.||++.+.|.|.+.|..++++||-  |++.++            ++|.+....-++.....-.      
T Consensus        71 ~aI~d~i~~~~~~V~t~v~G~AaSaaslIl~ag~~~~R~~~p~------------s~imiHqP~~~~~G~a~di~~~a~~  138 (197)
T PRK14512         71 FAIFNMIRFVKPKVFTIGVGLVASAAALIFLAAKKESRFSLPN------------ARYLLHQPLSGFKGVATDIEIYANE  138 (197)
T ss_pred             HHHHHHHHhCCCCEEEEEEeeeHhHHHHHHhcCCcCceeECCC------------CcEEEEcCccccccCHHHHHHHHHH
Confidence            45777888899999999999999999999999986  888888            7775554432221111100      


Q ss_pred             ---------hHHHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccccCc-hhHH
Q psy5402          92 ---------VLFPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGVFTT-EEIE  134 (198)
Q Consensus        92 ---------~~l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~-~~l~  134 (198)
                               ..+...-|  .....+++-....++|+||+++||+|+|++. +++.
T Consensus       139 l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~~lta~EA~~yGliD~I~~~~~~l~  193 (197)
T PRK14512        139 LNKVKSELNDIIAKETGQELDKVEKDTDRDFWLDSSSAVKYGLVFEVVETRLELE  193 (197)
T ss_pred             HHHHHHHHHHHHHHHhCcCHHHHHHhhhcCcccCHHHHHHcCCccEeecCcHHhH
Confidence                     00111122  2334455555677999999999999999975 4443

>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit

Probab=98.56  E-value=1.6e-06  Score=73.96  Aligned_cols=93  Identities=20%  Similarity=0.355  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhhHHH
Q psy5402          16 SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFP   95 (198)
Q Consensus        16 ~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~   95 (198)
                      ...+.+.+..+....+|+|+.|-|.|.|||......||++++.++            +.++.      +.|.++.+..+.
T Consensus       175 ~~aia~~l~a~s~~~VP~IsVViGeggsGGAla~~~aD~v~m~~~------------a~~sV------isPEg~a~Il~k  236 (316)
T TIGR00513       175 SEAIARNLREMARLGVPVICTVIGEGGSGGALAIGVGDKVNMLEY------------STYSV------ISPEGCAAILWK  236 (316)
T ss_pred             HHHHHHHHHHHHcCCCCEEEEEecccccHHHhhhccCCEEEEecC------------ceEEe------cCHHHHHHHhcc
Confidence            445667788888999999999999998888765557999999999            76643      223444443332


Q ss_pred             HHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCc
Q psy5402          96 RIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTT  130 (198)
Q Consensus        96 ~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~  130 (198)
                      .   ..++.+..- -..+++.++.+.|+||+|+|.
T Consensus       237 d---~~~a~~aae-~~~~ta~~l~~~G~iD~II~e  267 (316)
T TIGR00513       237 D---ASKAPKAAE-AMKITAPDLKELGLIDSIIPE  267 (316)
T ss_pred             c---hhhHHHHHH-HccCCHHHHHHCCCCeEeccC
Confidence            2   122222222 256789999999999999974

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=98.56  E-value=3.2e-07  Score=71.85  Aligned_cols=96  Identities=18%  Similarity=0.190  Sum_probs=70.9

Q ss_pred             HHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcC--EEEeecCCcccCCCcccceEEEecccccccccCCchh-------
Q psy5402          20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCD--IVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCS-------   90 (198)
Q Consensus        20 ~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD--~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~-------   90 (198)
                      ..+++.|...+.|+++.+.|.|.++|..+++++|  -|++.++            ++|.+.+...+......-       
T Consensus        57 ~~i~~~l~~~~~~v~t~~~g~aaS~~~~i~~~g~~~~r~~~~~------------a~~~~h~~~~~~~g~~~~~~~~~~~  124 (171)
T cd07017          57 LAIYDTMQYIKPPVSTICLGLAASMGALLLAAGTKGKRYALPN------------SRIMIHQPLGGAGGQASDIEIQAKE  124 (171)
T ss_pred             HHHHHHHHhcCCCEEEEEEeEehhHHHHHHHcCCCCCEEEccc------------hHHHHcCCCccCCCCHHHHHHHHHH
Confidence            3566777788999999999999999999999999  7999999            888888766554332110       


Q ss_pred             --------hhHHHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccc
Q psy5402          91 --------SVLFPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGV  127 (198)
Q Consensus        91 --------~~~l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v  127 (198)
                              ...+....|  .....+++-.+..++++||+++|+||+|
T Consensus       125 l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~lta~EA~e~GiiD~V  171 (171)
T cd07017         125 ILRLRRRLNEILAKHTGQPLEKIEKDTDRDRYMSAEEAKEYGLIDKI  171 (171)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHHHHHcCCCccC
Confidence                    001111122  2344566678888999999999999986

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ

>KOG1683|consensus

Probab=98.55  E-value=9.5e-09  Score=88.07  Aligned_cols=184  Identities=15%  Similarity=0.089  Sum_probs=130.0

Q ss_pred             CCCccCchhhhhh-------hHHHHHHHHHHHhcCCCcEEEEEcCccchHH--HHHhhhcCEEEee--cCCcccCCCccc
Q psy5402           2 TNNPTDLINEDTD-------TSITLQKYVAAFIDYPKPLIAIVNGPAIGIS--ATTLALCDIVFAS--DTAILLNHPVFV   70 (198)
Q Consensus         2 ~s~G~Dl~~~~~~-------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG--~~lalacD~~ia~--~~~~~~~~~~~~   70 (198)
                      +|+|.|+.+....       ....+++++.+...++.|+.+++||++-.|+  +.++-+|+|++..  ..          
T Consensus       113 isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~----------  182 (380)
T KOG1683|consen  113 ISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPP----------  182 (380)
T ss_pred             HhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccH----------
Confidence            5677777776433       2346788999999999999999999999999  8899999999988  44          


Q ss_pred             ceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccC--chhHHHHHHHHHHHHhcCC
Q psy5402          71 LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFT--TEEIERDLWPRIHAWAKLP  148 (198)
Q Consensus        71 ~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~--~~~l~~~a~~~a~~la~~~  148 (198)
                        ...+..+...++..+.+-.-.+...+|.+.+-..+-.+.-|+..||++-|+++++.|  .+++.+..+.-........
T Consensus       183 --y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~r~~eel~~~~~~g~kT~kg~y  260 (380)
T KOG1683|consen  183 --YTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIGPRIEEELLEKGRAGIKTGKGIY  260 (380)
T ss_pred             --HHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhccchhHHHHHHHHhhhhhccCccc
Confidence              566888999985444444445666678888888889999999999999999999999  4566665555555555444


Q ss_pred             HHHHHHHHHHhhchhhhcHHHH------HHHHHHHHHHHhCCHHHHHHHHHHHcc
Q psy5402         149 PQSMIFAKQLVRVPMLSMLHEA------NKRECKRLEERWESEEFMNAITAFFNR  197 (198)
Q Consensus       149 ~~a~~~~K~~l~~~~~~~~~~~------~~~e~~~~~~~~~~~~~~e~~~af~~k  197 (198)
                      +-+-..+|+..+..+...+.+.      .....+.+.....+|-++|++..+.|.
T Consensus       261 ~y~~~l~k~~~~~~~~~~~r~l~~~~~~r~~~~ed~v~~~~~p~VnEal~~l~EG  315 (380)
T KOG1683|consen  261 PYARGLTKKMKRDEMEALLRRLSLTPNPRVADDEDFVEFLLSPFVNEALRCLLEG  315 (380)
T ss_pred             ccccccccCCChhhHHHHHHHhccCCCcccCCHHHHHHHHhhHHHHHHHHHHHHH
Confidence            4444444433331111111110      112234556677889999999988873

>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated

Probab=98.51  E-value=3.6e-06  Score=71.84  Aligned_cols=93  Identities=24%  Similarity=0.394  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhhHHH
Q psy5402          16 SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFP   95 (198)
Q Consensus        16 ~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~   95 (198)
                      ...+.+.+.++....+|+|+.|-|.|.|||......||++++.++            +.++.      +.|.++.+..+.
T Consensus       175 ~~aia~~l~~~a~~~VP~IsVIiGeg~sGGAla~~~aD~v~m~~~------------A~~sv------isPEg~a~Il~~  236 (319)
T PRK05724        175 SEAIARNLREMARLKVPIICTVIGEGGSGGALAIGVGDRVLMLEY------------STYSV------ISPEGCASILWK  236 (319)
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEeCCccHHHHHHHhccCeeeeecC------------ceEee------cCHHHHHHHHhc
Confidence            456777888899999999999999998888766666999999999            76643      223344433332


Q ss_pred             HHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCc
Q psy5402          96 RIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTT  130 (198)
Q Consensus        96 ~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~  130 (198)
                      .   ..++.+..- ...+++.++.+.|+||+|+|.
T Consensus       237 ~---~~~a~~aae-~~~ita~~l~~~g~iD~II~E  267 (319)
T PRK05724        237 D---ASKAPEAAE-AMKITAQDLKELGIIDEIIPE  267 (319)
T ss_pred             C---chhHHHHHH-HcCCCHHHHHHCCCceEeccC
Confidence            2   233333333 556899999999999999974

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=98.51  E-value=2.1e-06  Score=79.55  Aligned_cols=119  Identities=15%  Similarity=0.310  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhhHHH
Q psy5402          16 SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFP   95 (198)
Q Consensus        16 ~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~   95 (198)
                      ...+.+.+..+....+|+|+.|-|.|.|||......||++++.++            +.++.      +.|.++++..+.
T Consensus       266 ~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~aD~VlMle~------------A~~sV------isPEgaAsILwk  327 (762)
T PLN03229        266 GEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCANKLLMLEN------------AVFYV------ASPEACAAILWK  327 (762)
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhcCCEEEEecC------------CeEEe------cCHHHHHHHHhc
Confidence            456677788888999999999999999888887788999999999            76543      234444443332


Q ss_pred             HHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCch-------------hHHHHHHHHHHHHhcCCHHHHHHHH
Q psy5402          96 RIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE-------------EIERDLWPRIHAWAKLPPQSMIFAK  156 (198)
Q Consensus        96 ~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~-------------~l~~~a~~~a~~la~~~~~a~~~~K  156 (198)
                      .   ..+|.+ ....-.++|++.+++|+||+|+|..             .+.....+....+...++..+...+
T Consensus       328 d---~~~A~e-AAe~lkiTa~dL~~lGiiD~IIpEp~ggAh~d~~~~~~~l~~~i~~~L~~l~~~~~~~l~~~R  397 (762)
T PLN03229        328 S---AKAAPK-AAEKLRITAQELCRLQIADGIIPEPLGGAHADPSWTSQQIKIAINENMDELGKMDTEELLKHR  397 (762)
T ss_pred             C---cccHHH-HHHHcCCCHHHHHhCCCCeeeccCCCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            2   223332 3455689999999999999999842             1223344555556666666554433

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.51  E-value=1.4e-07  Score=74.30  Aligned_cols=99  Identities=20%  Similarity=0.244  Sum_probs=70.2

Q ss_pred             HHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCE--EEeecCCcccCCCcccceEEEecccccccccCCchhhh----
Q psy5402          19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDI--VFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSV----   92 (198)
Q Consensus        19 ~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~--~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~----   92 (198)
                      -..++..|..++.|+++.+.|.|.+.|..++++||.  |++.++            +.|.+.+...+.........    
T Consensus        63 g~~i~~~i~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~------------s~~m~H~p~~~~~g~~~~l~~~~~  130 (182)
T PF00574_consen   63 GLAIYDAIRSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPN------------SRFMIHQPSTGSGGNASELREQAK  130 (182)
T ss_dssp             HHHHHHHHHHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-------------EEEES-CEEEEEEEHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCeEEEEeCccccceehhhhcCCcCceeeeec------------CEEEeecceeecccccchhHHHHH
Confidence            456788888999999999999999999999999999  899999            99988887665543111110    


Q ss_pred             -----------HHHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccccC
Q psy5402          93 -----------LFPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGVFT  129 (198)
Q Consensus        93 -----------~l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~  129 (198)
                                 .+....|  .....+++-...-++++||+++||||+|+.
T Consensus       131 ~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~  180 (182)
T PF00574_consen  131 ELEKLNERIANIYAERTGLSKEEIEELMDRDTWLSAEEALEYGIIDEIIE  180 (182)
T ss_dssp             HHHHHHHHHHHHHHHHHTS-HHHHHHHCSSTEEEEHHHHHHHTSSSEEES
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHhCCccccHHHHHHcCCCCEecc
Confidence                       1111112  222345555556689999999999999975

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit

Probab=98.43  E-value=1.9e-06  Score=69.22  Aligned_cols=99  Identities=18%  Similarity=0.086  Sum_probs=71.4

Q ss_pred             HHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcC--EEEeecCCcccCCCcccceEEEecccccccc-cCCchh------
Q psy5402          20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCD--IVFASDTAILLNHPVFVLQATFHTPFTLRGM-TPEGCS------   90 (198)
Q Consensus        20 ~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD--~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi-~p~~g~------   90 (198)
                      ..++..+...+.||...+.|.|.+.|..|++++|  -|++.++            ++|.+.....|. .....-      
T Consensus        78 ~aIyd~m~~~~~~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~------------s~imiHqp~~~~~~G~a~di~~~a~  145 (200)
T CHL00028         78 LAIYDTMQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPH------------ARVMIHQPASSFYEGQASEFVLEAE  145 (200)
T ss_pred             HHHHHHHHhcCCCEEEEEEEehHHHHHHHHhCCCCCCEEecCC------------CeEEEecCccCcCCCCHHHHHHHHH
Confidence            3477788889999999999999999999999999  5999999            888777765542 211110      


Q ss_pred             ---------hhHHHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccccCc
Q psy5402          91 ---------SVLFPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGVFTT  130 (198)
Q Consensus        91 ---------~~~l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~  130 (198)
                               ...+....|  .....+++-....++|+||+++||||+|+++
T Consensus       146 ~l~~~~~~~~~~ya~~Tg~~~e~i~~~~~r~~~lta~EA~eyGliD~I~~~  196 (200)
T CHL00028        146 ELLKLRETITRVYAQRTGKPLWVISEDMERDVFMSATEAKAYGIVDLVAVN  196 (200)
T ss_pred             HHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCCcEEeec
Confidence                     011122223  2333455666677999999999999999864

>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification

Probab=98.42  E-value=3.2e-08  Score=76.24  Aligned_cols=115  Identities=18%  Similarity=0.167  Sum_probs=67.5

Q ss_pred             HhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccC---------Cch-------
Q psy5402          26 FIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTP---------EGC-------   89 (198)
Q Consensus        26 i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p---------~~g-------   89 (198)
                      +....|||||.++|.|..+++.++.+||-+++.+..+-+.+.+......|.-..-++|+-+         ..+       
T Consensus         2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s   81 (154)
T PF01343_consen    2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS   81 (154)
T ss_dssp             HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--
T ss_pred             ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC
Confidence            3567899999999999999999999999999999866555554322222222222233211         110       


Q ss_pred             --hhhHHHHH-----------hcHHH-----HHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHH
Q psy5402          90 --SSVLFPRI-----------FGNSV-----ASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPR  140 (198)
Q Consensus        90 --~~~~l~~~-----------vG~~~-----a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~  140 (198)
                        .-..+.+.           |-..+     ..+-+..|..|++++|++.||||++-..+++.+.+.+.
T Consensus        82 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~~  150 (154)
T PF01343_consen   82 EEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTFDEAIARLAKL  150 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHHH
Confidence              01111111           11111     12336799999999999999999998777766655443

; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP

Probab=98.36  E-value=3.4e-06  Score=67.26  Aligned_cols=98  Identities=16%  Similarity=0.129  Sum_probs=68.6

Q ss_pred             HHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcC--EEEeecCCcccCCCcccceEEEecccccccccCCchhh------
Q psy5402          20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCD--IVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSS------   91 (198)
Q Consensus        20 ~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD--~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~------   91 (198)
                      ..++..|...+.|+...+.|.|.+.|..+++++|  .|++.++            ++|.+.+..-|......-.      
T Consensus        74 ~~I~d~l~~~~~~v~t~~~G~AaSaaslI~~aG~~~~r~~~p~------------s~imiH~p~~~~~G~a~d~~~~a~~  141 (191)
T TIGR00493        74 LAIYDTMQFIKPDVSTICIGQAASMGAFLLSAGAKGKRFSLPN------------SRIMIHQPLGGAQGQASDIEIQANE  141 (191)
T ss_pred             HHHHHHHHhcCCCEEEEEEEeeccHHHHHHhcCCCCcEEecCC------------ceEEEecCcccccCCcchhHHHHHH
Confidence            3456677777778888889999999998888766  5999999            8888866543322111111      


Q ss_pred             ---------hHHHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccccC
Q psy5402          92 ---------VLFPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGVFT  129 (198)
Q Consensus        92 ---------~~l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~  129 (198)
                               ..+.+.-|  .....+++-.+..++|+||+++||+|+|+.
T Consensus       142 l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~ii~  190 (191)
T TIGR00493       142 ILRLKGLLNDILANHTGQSLEQIEKDTERDFFMSAEEAKEYGLIDSVLT  190 (191)
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHhhCCccCcHHHHHHcCCccEEec
Confidence                     11222333  244456667778899999999999999864

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.

>TIGR03133 malonate_beta malonate decarboxylase, beta subunit

Probab=98.35  E-value=8.5e-06  Score=68.30  Aligned_cols=113  Identities=12%  Similarity=0.201  Sum_probs=71.4

Q ss_pred             CCccCchhhhhhhHHHHHHHHHHHhcCC--CcEEEEEcCc--cchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecc
Q psy5402           3 NNPTDLINEDTDTSITLQKYVAAFIDYP--KPLIAIVNGP--AIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTP   78 (198)
Q Consensus         3 s~G~Dl~~~~~~~~~~~~~~~~~i~~~~--kp~IA~v~G~--a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~p   78 (198)
                      |.|.-++|-.. ....+.+.+..+..+.  .|+|+.+-|+  |+||+..++.+||++|++++            +++++.
T Consensus       108 SgGaRlqEg~~-~L~~~a~i~~~~~~ls~~vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~------------a~i~~a  174 (274)
T TIGR03133       108 TGGVRLQEANA-GLIAIAEIMRAILDARAAVPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEE------------GRLGLS  174 (274)
T ss_pred             CCCcChhhhHH-HHHHHHHHHHHHHHHhCCCCEEEEEeCCCCcchHHHHHHhcCCEEEEeCC------------cEEecc
Confidence            55666654322 2222334444433332  9999999999  89999999999999999998            777652


Q ss_pred             cccccccCCchhhhHHHHHhcH--HHHHHHHhcCCCCCHHHHHhcCCcccccCch--hHHHHHHH
Q psy5402          79 FTLRGMTPEGCSSVLFPRIFGN--SVASELLYTGRKLNAQEALQYGFVSGVFTTE--EIERDLWP  139 (198)
Q Consensus        79 e~~~Gi~p~~g~~~~l~~~vG~--~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~--~l~~~a~~  139 (198)
                                 +........|.  ....+--+..+.+.+......|++|.+++++  .+...+.+
T Consensus       175 -----------GP~VIe~~~G~e~~~~~d~~l~~~~lGG~~~~~sG~~D~~v~dd~~a~~~~~~~  228 (274)
T TIGR03133       175 -----------GPEVIEQEAGVEEFDSRDRALVWRTTGGKHRFLSGDADVLVEDDVDAFRAAVIA  228 (274)
T ss_pred             -----------CHHHHHHhcCCCccCHHHhcccccccchHhHhhcccceEEeCCHHHHHHHHHHH
Confidence                       12223333342  2233444455567777788899999999864  34444433

Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=98.33  E-value=4.5e-06  Score=67.91  Aligned_cols=98  Identities=15%  Similarity=0.078  Sum_probs=70.2

Q ss_pred             HHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCE--EEeecCCcccCCCcccceEEEecccccccccCCchhhh-----
Q psy5402          20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDI--VFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSV-----   92 (198)
Q Consensus        20 ~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~--~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~-----   92 (198)
                      ..++..+...+.||...+.|.|.+.|..|++++|.  |++.++            +++.+-...-|......-..     
T Consensus       102 laIyd~m~~~~~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pn------------a~iMiHqP~~~~~G~a~di~i~a~e  169 (221)
T PRK14514        102 LGIYDTMQFISSDVATICTGMAASMASVLLVAGTKGKRSALPH------------SRVMIHQPLGGAQGQASDIEITARE  169 (221)
T ss_pred             HHHHHHHHhcCCCEEEEEEEEehhHHHHHHhcCCCCceeeCCC------------CEEEeccCCcccCCCcchHHHHHHH
Confidence            34677888899999999999999999999999996  899999            88777665543322111000     


Q ss_pred             ----------HHHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccccC
Q psy5402          93 ----------LFPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGVFT  129 (198)
Q Consensus        93 ----------~l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~  129 (198)
                                .+....|  .....+.+-....++|+||+++||||+|++
T Consensus       170 l~~~~~~i~~iya~~TG~~~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~  218 (221)
T PRK14514        170 IQKLKKELYTIIADHSGTPFDKVWADSDRDYWMTAQEAKEYGMIDEVLI  218 (221)
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCccEEee
Confidence                      0111223  233345566667799999999999999986

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.32  E-value=5.1e-06  Score=66.54  Aligned_cols=99  Identities=13%  Similarity=0.066  Sum_probs=69.2

Q ss_pred             HHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCE--EEeecCCcccCCCcccceEEEecccccccccCCchhhh-----
Q psy5402          20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDI--VFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSV-----   92 (198)
Q Consensus        20 ~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~--~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~-----   92 (198)
                      ..++..|...+.||...+.|.|.+.|..|++++|.  |++.++            +++.+....-|......-..     
T Consensus        73 ~aIyd~m~~~~~~V~t~~~G~AaS~AslIl~aG~~~~R~~~p~------------a~iMIHqP~~~~~G~a~di~~~a~~  140 (196)
T PRK12551         73 LGIFDTMQHVKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQH------------SRIMIHQPLGGARGQASDIRIQADE  140 (196)
T ss_pred             HHHHHHHHhcCCCEEEEEEEEehhHHHHHHhCCCCCceecCCC------------CEEEEecCCcccCCCcchHHHHHHH
Confidence            35677888889999999999999999999999985  888888            88776665433221111000     


Q ss_pred             ----------HHHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccccCc
Q psy5402          93 ----------LFPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGVFTT  130 (198)
Q Consensus        93 ----------~l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~  130 (198)
                                .+....|  .....+++-.-..++|+||+++||+|+|++.
T Consensus       141 l~~~~~~~~~~ya~~tG~~~~~i~~~~~rd~~msa~EA~eyGliD~I~~~  190 (196)
T PRK12551        141 ILFLKERLNTELSERTGQPLERIQEDTDRDFFMSPSEAVEYGLIDLVIDK  190 (196)
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHhhcCcCCCHHHHHHcCCCcEEecc
Confidence                      1112223  1233455556667999999999999999875

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=98.32  E-value=5.7e-06  Score=66.45  Aligned_cols=98  Identities=15%  Similarity=0.145  Sum_probs=71.4

Q ss_pred             HHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCE--EEeecCCcccCCCcccceEEEecccccccccCCchhhhH----
Q psy5402          20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDI--VFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVL----   93 (198)
Q Consensus        20 ~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~--~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~----   93 (198)
                      ..++..|...+.||...+.|.|.+.|..|++++|-  |++.++            +++-+.....|...  .....    
T Consensus        75 laIyd~m~~~~~~V~Ti~~G~AaS~As~il~aG~kgkR~~~pn------------a~iMIHqp~~~~~G--~a~di~~~a  140 (201)
T PRK14513         75 LAIYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPN------------SRIMIHQGSAGFRG--NTPDLEVQA  140 (201)
T ss_pred             HHHHHHHHhcCCCEEEEEEeeehhhHHHHHhcCCCCcEEecCC------------eEEEEecCCCCCCC--CHHHHHHHH
Confidence            45678888899999999999999999999999996  899999            88877766544321  11111    


Q ss_pred             -------------HHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccccCch
Q psy5402          94 -------------FPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGVFTTE  131 (198)
Q Consensus        94 -------------l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~  131 (198)
                                   +.+..|  ...-.+++-....++|+||+++||||+|+++.
T Consensus       141 ~el~~~~~~l~~iya~~Tg~~~~~I~~~~~rd~~msa~EA~eyGliD~I~~~~  193 (201)
T PRK14513        141 KEVLFLRDTLVDIYHRHTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSVIEPT  193 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHCcCHHHHHHHhccCcccCHHHHHHcCCCcEEeccC
Confidence                         112223  23334555566679999999999999998753

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.32  E-value=5.8e-07  Score=77.04  Aligned_cols=117  Identities=18%  Similarity=0.120  Sum_probs=73.8

Q ss_pred             HHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEeccc--cccccc---------C
Q psy5402          18 TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPF--TLRGMT---------P   86 (198)
Q Consensus        18 ~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe--~~~Gi~---------p   86 (198)
                      .+.+.++++..-. ||++.|++.|.-||..++++||.+||+++.|.|++.|+-.  .+.+.+  -+.|+-         -
T Consensus       117 ~i~~~l~~l~~~~-PV~v~v~~~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~--~~~~~~l~~k~Gv~~~~~~ag~~k  193 (317)
T COG0616         117 LIARALKRLRAKK-PVVVSVGGYAASGGYYIALAADKIVADPSSITGSIGVISG--APNFEELLEKLGVEKEVITAGEYK  193 (317)
T ss_pred             HHHHHHHHHhhcC-CEEEEECCeecchhhhhhccCCEEEecCCceeeeceeEEe--cCCHHHHHHhcCCceeeeeccccc
Confidence            4445555555554 9999999999999999999999999999999998886222  111111  112211         0


Q ss_pred             Cc-----hh----hh-----------HHHHHhc-----HHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHH
Q psy5402          87 EG-----CS----SV-----------LFPRIFG-----NSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDL  137 (198)
Q Consensus        87 ~~-----g~----~~-----------~l~~~vG-----~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a  137 (198)
                      +.     .-    -.           .|...|.     ......-+.+|+.+++++|++.||||++-..++....+
T Consensus       194 ~~~~~~~~~t~e~~~~~q~~~~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av~~~  269 (317)
T COG0616         194 DILSPFRPLTEEEREILQKEIDETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAVKDA  269 (317)
T ss_pred             cccCcccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHHHHHH
Confidence            00     00    00           1111111     11113577899999999999999999997654443333

>PRK07189 malonate decarboxylase subunit beta; Reviewed

Probab=98.10  E-value=2.7e-05  Score=66.04  Aligned_cols=104  Identities=13%  Similarity=0.200  Sum_probs=62.4

Q ss_pred             CCccCchhhhhhhHHHHHHHHHH---HhcCCCcEEEEEcCc--cchHHHHHhhhcCEEEeecCCcccCCCcccceEEEec
Q psy5402           3 NNPTDLINEDTDTSITLQKYVAA---FIDYPKPLIAIVNGP--AIGISATTLALCDIVFASDTAILLNHPVFVLQATFHT   77 (198)
Q Consensus         3 s~G~Dl~~~~~~~~~~~~~~~~~---i~~~~kp~IA~v~G~--a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~   77 (198)
                      |.|.-++|-. .....+.+++..   +... +|+|+.+-|+  |+||+...+.+||++|++++            +++++
T Consensus       117 SGGaRlqEg~-~~L~~~a~i~~~~~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~------------a~igl  182 (301)
T PRK07189        117 TGGVRLQEAN-AGLAAIAEIMRAIVDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEE------------GRLGL  182 (301)
T ss_pred             CCCcCccchH-HHHHHHHHHHHHHHHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECC------------cEEec
Confidence            5566665432 122223344443   3334 9999999999  99999999999999999999            77765


Q ss_pred             ccccccccCCchhhhHHHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccccCch
Q psy5402          78 PFTLRGMTPEGCSSVLFPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGVFTTE  131 (198)
Q Consensus        78 pe~~~Gi~p~~g~~~~l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~  131 (198)
                      .-           ........|  .-.+.+.-+..+.+.+......|.+|.+++++
T Consensus       183 aG-----------P~VIe~~~G~e~~d~~d~~~vw~~lGG~h~~~sG~~D~~v~dd  227 (301)
T PRK07189        183 SG-----------PEVIEQEAGVEEFDSRDRALVWRTTGGKHRYLSGLADALVDDD  227 (301)
T ss_pred             cC-----------HHHHHHhcCCcccCHHHhcccccccCcceeeecccceEEeCCH
Confidence            21           112222222  11122222222223334455689999999864

>PRK05654 acetyl-CoA carboxylase subunit beta; Validated

Probab=98.08  E-value=7.2e-05  Score=63.41  Aligned_cols=98  Identities=16%  Similarity=0.188  Sum_probs=69.6

Q ss_pred             HHHHhcCCCcEEEEEcCccchHHHH-HhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhhHHHHHhcHH
Q psy5402          23 VAAFIDYPKPLIAIVNGPAIGISAT-TLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNS  101 (198)
Q Consensus        23 ~~~i~~~~kp~IA~v~G~a~GgG~~-lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~  101 (198)
                      +.++.....|.|+.+-|+|+||+.. .++.+|++|+.++            +.+++.-.+           .+...++..
T Consensus       187 ~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~------------A~ig~aGpr-----------vie~~~~e~  243 (292)
T PRK05654        187 LKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPK------------ALIGFAGPR-----------VIEQTVREK  243 (292)
T ss_pred             HHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecC------------cEEEecCHH-----------HHHhhhhhh
Confidence            3445567899999999999999754 5778999999988            877663221           122222211


Q ss_pred             HHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCH
Q psy5402         102 VASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP  149 (198)
Q Consensus       102 ~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~  149 (198)
                      .      .-+.-+++-+.+.|+||.|+++.++.+...++++.+...++
T Consensus       244 l------pe~~~~ae~~~~~G~vD~Vv~~~e~r~~l~~~L~~~~~~~~  285 (292)
T PRK05654        244 L------PEGFQRAEFLLEHGAIDMIVHRRELRDTLASLLALHTKQPA  285 (292)
T ss_pred             h------hhhhcCHHHHHhCCCCcEEECHHHHHHHHHHHHHHHhcCCC
Confidence            1      11123577778999999999999999998888887765543

>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit

Probab=97.90  E-value=0.00018  Score=60.83  Aligned_cols=95  Identities=14%  Similarity=0.157  Sum_probs=67.8

Q ss_pred             HHHHhcCCCcEEEEEcCccchHHHH-HhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhhHHHHHhcHH
Q psy5402          23 VAAFIDYPKPLIAIVNGPAIGISAT-TLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNS  101 (198)
Q Consensus        23 ~~~i~~~~kp~IA~v~G~a~GgG~~-lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~  101 (198)
                      +.++.....|.|+.+-|+|+||+.. .++.+|++|+.++            +.+++.-.+           .+...+|..
T Consensus       186 ~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~------------A~ig~aGpr-----------Vie~ti~e~  242 (285)
T TIGR00515       186 LAKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPK------------ALIGFAGPR-----------VIEQTVREK  242 (285)
T ss_pred             HHHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECC------------eEEEcCCHH-----------HHHHHhcCc
Confidence            3456667899999999999999754 6689999999999            888763322           122223311


Q ss_pred             HHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhc
Q psy5402         102 VASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK  146 (198)
Q Consensus       102 ~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~  146 (198)
                      ..      -+.-+++-+.+.|+||.|+++.++.+...++++.+..
T Consensus       243 lp------e~~q~ae~~~~~G~vD~iv~~~~~r~~l~~~L~~~~~  281 (285)
T TIGR00515       243 LP------EGFQTSEFLLEHGAIDMIVHRPEMKKTLASLLAKLQN  281 (285)
T ss_pred             cc------hhcCCHHHHHhCCCCcEEECcHHHHHHHHHHHHHHhh
Confidence            11      1123566688899999999999999888888776543

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=97.87  E-value=0.00011  Score=58.70  Aligned_cols=99  Identities=20%  Similarity=0.205  Sum_probs=64.5

Q ss_pred             HHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEE--EeecCCcccCCCcccceEEEecccccccccCCchh-hhHHHHH
Q psy5402          21 KYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIV--FASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCS-SVLFPRI   97 (198)
Q Consensus        21 ~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~--ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~-~~~l~~~   97 (198)
                      .++..+...+.||...+.|.|..-|..|++++|-.  ++.++            +++-..... |.+-+... ...-++.
T Consensus        76 AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPn------------srimIHqP~-gg~~G~a~Di~i~A~e  142 (200)
T COG0740          76 AIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPN------------ARIMIHQPS-GGAQGQASDIEIHARE  142 (200)
T ss_pred             HHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCC------------ceEEEecCC-ccCccCHHHHHHHHHH
Confidence            46788889999999999999999999999999874  77777            666554444 22211111 0000111


Q ss_pred             ---------------hcHHHH--HHHHhcCCCCCHHHHHhcCCcccccCchh
Q psy5402          98 ---------------FGNSVA--SELLYTGRKLNAQEALQYGFVSGVFTTEE  132 (198)
Q Consensus        98 ---------------vG~~~a--~~lll~g~~~~a~eA~~~Glv~~v~~~~~  132 (198)
                                     -|....  ....-....++|+||+++||+|+|.+..+
T Consensus       143 i~~~~~~l~~i~a~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~  194 (200)
T COG0740         143 ILKIKERLNRIYAEHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESRE  194 (200)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHhhcccccCCHHHHHHcCCcceeccccc
Confidence                           111111  12233445599999999999999987543

>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily

Probab=97.86  E-value=0.00014  Score=60.67  Aligned_cols=59  Identities=15%  Similarity=0.122  Sum_probs=53.4

Q ss_pred             HHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCc
Q psy5402          18 TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG   88 (198)
Q Consensus        18 ~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~   88 (198)
                      .-.++.+.+.+++.|+++.|+..|+.+|..++++||-+++.++            +.+|--+..+|-.|..
T Consensus       106 AA~~I~~~l~~~~~~v~v~VP~~A~SAGTlIALaADeIvM~p~------------a~LGpiDPqi~~~pA~  164 (285)
T PF01972_consen  106 AAEQIARALREHPAKVTVIVPHYAMSAGTLIALAADEIVMGPG------------AVLGPIDPQIGQYPAA  164 (285)
T ss_pred             HHHHHHHHHHhCCCCEEEEECcccccHHHHHHHhCCeEEECCC------------CccCCCCccccCCChH
Confidence            4456788888999999999999999999999999999999999            9999999999888754

The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane

>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed

Probab=97.75  E-value=0.00051  Score=58.14  Aligned_cols=87  Identities=14%  Similarity=0.116  Sum_probs=60.0

Q ss_pred             cCCCcEEEEEcCccchHHHHH-hhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhhHHHHHhcHHHHHHH
Q psy5402          28 DYPKPLIAIVNGPAIGISATT-LALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASEL  106 (198)
Q Consensus        28 ~~~kp~IA~v~G~a~GgG~~l-alacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~l  106 (198)
                      .-..|.|+.+.|+|.||+... ++.||++|+.++            +.+++.-.+           .....+|..     
T Consensus       205 ~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~------------A~IgfAGPr-----------VIe~t~ge~-----  256 (296)
T CHL00174        205 NKKLFYISILTSPTTGGVTASFGMLGDIIIAEPN------------AYIAFAGKR-----------VIEQTLNKT-----  256 (296)
T ss_pred             cCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCC------------eEEEeeCHH-----------HHHHhcCCc-----
Confidence            567999999999999998765 777999999777            766543211           122222211     


Q ss_pred             HhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHH
Q psy5402         107 LYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHA  143 (198)
Q Consensus       107 ll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~  143 (198)
                       +.-..=+++-.++.|+||.+|+..++.+....++.-
T Consensus       257 -lpe~fq~ae~l~~~G~vD~iV~r~~lr~~l~~ll~~  292 (296)
T CHL00174        257 -VPEGSQAAEYLFDKGLFDLIVPRNLLKGVLSELFQL  292 (296)
T ss_pred             -CCcccccHHHHHhCcCceEEEcHHHHHHHHHHHHHh
Confidence             111123567788999999999999988877776654

>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit

Probab=97.74  E-value=0.00022  Score=58.72  Aligned_cols=96  Identities=15%  Similarity=0.099  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHhc---CCCcEEEEEcCccchHHHH-HhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhh
Q psy5402          16 SITLQKYVAAFID---YPKPLIAIVNGPAIGISAT-TLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSS   91 (198)
Q Consensus        16 ~~~~~~~~~~i~~---~~kp~IA~v~G~a~GgG~~-lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~   91 (198)
                      ...+.+++..+..   .+.|+|+.|-|.++|||+. +.+.+|.++|.++            +.+       +..++-+++
T Consensus        90 ~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~------------A~i-------~vm~~e~aa  150 (238)
T TIGR03134        90 NQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPG------------AMV-------HVMDLESMA  150 (238)
T ss_pred             HHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCC------------cEE-------EecCHHHHH
Confidence            3445555556654   4599999999999998864 4445888888887            655       444444443


Q ss_pred             hHHHHHhcHHHHHHHHhcC--CCCCHHHHHhcCCcccccCchh
Q psy5402          92 VLFPRIFGNSVASELLYTG--RKLNAQEALQYGFVSGVFTTEE  132 (198)
Q Consensus        92 ~~l~~~vG~~~a~~lll~g--~~~~a~eA~~~Glv~~v~~~~~  132 (198)
                      ..+.+-.  ..+.++.-.-  ...+.+.+.++|+||+|+++.+
T Consensus       151 ~I~~~~~--~~~~e~a~~~~~~a~~~~~~~~~G~vd~vi~~~~  191 (238)
T TIGR03134       151 RVTKRSV--EELEALAKSSPVFAPGIENFVKLGGVHALLDVAD  191 (238)
T ss_pred             HHHccCH--hHHHHHHHhhhhhccCHHHHHhCCCccEEeCCCC
Confidence            3333322  2333332221  2467788999999999998654

Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>PRK12552 ATP-dependent Clp protease-like protein; Reviewed

Probab=97.69  E-value=0.00027  Score=57.58  Aligned_cols=99  Identities=20%  Similarity=0.162  Sum_probs=66.7

Q ss_pred             HHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCE--EEeecCCcccCCCcccceEEEecccccccccCCchhhhH----
Q psy5402          20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDI--VFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVL----   93 (198)
Q Consensus        20 ~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~--~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~----   93 (198)
                      ..++..+...+-||...+.|.|.+.+..|++++|-  |++.++            +++-+....-|......-...    
T Consensus        97 laIyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpn------------s~iMIHqP~~~~~G~A~di~~~a~e  164 (222)
T PRK12552         97 FAICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPH------------ATIVLHQPRSGARGQATDIQIRAKE  164 (222)
T ss_pred             HHHHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCC------------cEEEeccCCcccccCHHHHHHHHHH
Confidence            34677777888899999999999999999999996  889888            887776655443211100000    


Q ss_pred             -----------HHHHhcH--HHHHHHHhcCCCCCHHHHHhcCCcccccCc
Q psy5402          94 -----------FPRIFGN--SVASELLYTGRKLNAQEALQYGFVSGVFTT  130 (198)
Q Consensus        94 -----------l~~~vG~--~~a~~lll~g~~~~a~eA~~~Glv~~v~~~  130 (198)
                                 +....|.  ..-.+.+-.-..++|+||+++||||+|+..
T Consensus       165 l~~~r~~l~~iya~~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~  214 (222)
T PRK12552        165 VLHNKRTMLEILSRNTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLES  214 (222)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEecc
Confidence                       0111111  111233334455999999999999999864

>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

Probab=97.55  E-value=0.00053  Score=60.61  Aligned_cols=103  Identities=18%  Similarity=0.234  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHhcCCCcEEEEEc---CccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccc--cCC-ch
Q psy5402          16 SITLQKYVAAFIDYPKPLIAIVN---GPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGM--TPE-GC   89 (198)
Q Consensus        16 ~~~~~~~~~~i~~~~kp~IA~v~---G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi--~p~-~g   89 (198)
                      .+.+++++++|.+.|.|++..|.   ++|..+|..++++||+..+.+.            +.+|-...-.+-  .+. ..
T Consensus        71 ~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPg------------T~iGaa~Pi~~~g~~~~~~~  138 (436)
T COG1030          71 LDSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPG------------TNIGAATPIAGGGTSAKEAN  138 (436)
T ss_pred             HHHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCC------------CcccccceecCCCCCccchh
Confidence            35788999999999999999887   4699999999999999999999            555544432221  111 11


Q ss_pred             -hhhHHHHH------hc--HHHHHHHHhcCCCCCHHHHHhcCCcccccCc
Q psy5402          90 -SSVLFPRI------FG--NSVASELLYTGRKLNAQEALQYGFVSGVFTT  130 (198)
Q Consensus        90 -~~~~l~~~------vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~  130 (198)
                       ........      -|  ...|.+++.....++++||.+.|++|-+..+
T Consensus       139 ~~n~~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~  188 (436)
T COG1030         139 TTNAAVAYIRSLAEERGRNPTWAERFVTENLSLTAEEALRQGVIDLIARD  188 (436)
T ss_pred             hHHHHHHHHHHHHHHcCCChHHHHHHhhhccCCChhHHHhcCccccccCC
Confidence             11112221      12  3556789999999999999999999988754

>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]

Probab=97.54  E-value=0.00069  Score=56.82  Aligned_cols=93  Identities=25%  Similarity=0.456  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhhHHH
Q psy5402          16 SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFP   95 (198)
Q Consensus        16 ~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~   95 (198)
                      .+.+.+-+..+..+++|+||.|=|---+||.--...+|.+++.++            ++++.      |.|.++++.+|.
T Consensus       174 ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~------------s~ySV------isPEG~AsILWk  235 (317)
T COG0825         174 SEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLEN------------STYSV------ISPEGCASILWK  235 (317)
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHh------------ceeee------cChhhhhhhhhc
Confidence            456777788899999999999999888888777777999999999            88764      567777666554


Q ss_pred             HHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCc
Q psy5402          96 RIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTT  130 (198)
Q Consensus        96 ~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~  130 (198)
                      .   ..+|.+. .....++|++.+++|+||.|+|.
T Consensus       236 D---~~ka~eA-Ae~mkita~dLk~lgiID~II~E  266 (317)
T COG0825         236 D---ASKAKEA-AEAMKITAHDLKELGIIDGIIPE  266 (317)
T ss_pred             C---hhhhHHH-HHHcCCCHHHHHhCCCcceeccC
Confidence            3   4455543 35568999999999999999984

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=97.48  E-value=0.0014  Score=59.75  Aligned_cols=112  Identities=18%  Similarity=0.234  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhh----cCEEEeecCCcccCCCcccceEEEecccccccccCCchhhh
Q psy5402          17 ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL----CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSV   92 (198)
Q Consensus        17 ~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lala----cD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~   92 (198)
                      ....+++.++....+|.|+.|-|.++|||+.-+..    +|++++.++            +.++.-.      |..+...
T Consensus       375 ~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~------------a~~~v~~------pe~a~~i  436 (512)
T TIGR01117       375 RHGAKVLYAYSEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPT------------AEIAVMG------PAGAANI  436 (512)
T ss_pred             HHHHHHHHHHHhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCC------------CeEeecC------HHHHHHH
Confidence            35556788888899999999999999887544432    899999998            7665422      1222222


Q ss_pred             HHHHHhc----HHHHHHHH---hcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhc
Q psy5402          93 LFPRIFG----NSVASELL---YTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK  146 (198)
Q Consensus        93 ~l~~~vG----~~~a~~ll---l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~  146 (198)
                      .+.+.+.    ...++.-.   +.-+..++..+.+.|+||.|+++.+..+.....++.+..
T Consensus       437 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~g~vD~VI~P~~tR~~l~~~l~~~~~  497 (512)
T TIGR01117       437 IFRKDIKEAKDPAATRKQKIAEYREEFANPYKAAARGYVDDVIEPKQTRPKIVNALAMLES  497 (512)
T ss_pred             HhhhhcccccCHHHHHHHHHHHHHHhhcCHHHHHhcCCCCeeEChHHHHHHHHHHHHHHhc
Confidence            2222111    11111111   122345788999999999999999998887777765543

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A

Probab=97.42  E-value=0.00068  Score=49.96  Aligned_cols=62  Identities=13%  Similarity=0.066  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Q psy5402         135 RDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN  196 (198)
Q Consensus       135 ~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~  196 (198)
                      +.+.+.++.+.+.+|.++..+-+++++....++.+.++.|......++.++||.||+++-+-
T Consensus        31 ~~a~~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~~~DF~EGVRA~LI   92 (118)
T PF13766_consen   31 EWAQKTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRCMRHPDFAEGVRALLI   92 (118)
T ss_dssp             HHHHHHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHCCSCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHh
Confidence            46777788899999999999999999999999999999999999999999999999999764

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=97.31  E-value=0.0023  Score=59.05  Aligned_cols=86  Identities=17%  Similarity=0.096  Sum_probs=57.0

Q ss_pred             HhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhhHHHHHhcHHHHHH
Q psy5402          26 FIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASE  105 (198)
Q Consensus        26 i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~  105 (198)
                      +....+|.|+.|-|+|.|||......||++|++++.           +.+.+                    -|+...+.
T Consensus       201 ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~-----------a~i~~--------------------aGP~vV~~  249 (569)
T PLN02820        201 MSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGN-----------GTIFL--------------------AGPPLVKA  249 (569)
T ss_pred             HhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCC-----------cEEEe--------------------cCHHHHHh
Confidence            445678999999999999999999999999999872           44433                    12222221


Q ss_pred             HHhcCCCCCHHHH-----H--hcCCcccccCchh-HHHHHHHHHHHH
Q psy5402         106 LLYTGRKLNAQEA-----L--QYGFVSGVFTTEE-IERDLWPRIHAW  144 (198)
Q Consensus       106 lll~g~~~~a~eA-----~--~~Glv~~v~~~~~-l~~~a~~~a~~l  144 (198)
                        .+|+.+++++.     +  ..|.+|.+++++. ..+.+++++.-+
T Consensus       250 --~~Ge~v~~eeLGGa~~h~~~sGv~d~~~~de~~a~~~~R~lls~L  294 (569)
T PLN02820        250 --ATGEEVSAEDLGGADVHCKVSGVSDHFAQDELHALAIGRNIVKNL  294 (569)
T ss_pred             --hcCcccCHHHhCCHHHhcccccccccccCchHHHHHHHHHHHHhc
Confidence              34555665553     2  4788888887643 334455555544

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=97.23  E-value=0.0022  Score=58.56  Aligned_cols=109  Identities=14%  Similarity=0.153  Sum_probs=66.4

Q ss_pred             CCccCchhhhhhhHHHHHHHHHH--HhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccc
Q psy5402           3 NNPTDLINEDTDTSITLQKYVAA--FIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFT   80 (198)
Q Consensus         3 s~G~Dl~~~~~~~~~~~~~~~~~--i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~   80 (198)
                      |.|..+++-... ...+.+++..  ..+-..|.|+++.|+|.||+......||++|+.++.           +.+++   
T Consensus       126 SgGarm~eg~~~-l~~~~~~~~~~~~~s~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~-----------a~i~~---  190 (512)
T TIGR01117       126 SGGARIQEAVDA-LKGYGDIFYRNTIASGVVPQISAIMGPCAGGAVYSPALTDFIYMVDNT-----------SQMFI---  190 (512)
T ss_pred             CCCCCccccchh-hhhHHHHHHHHHHHcCCCcEEEEEecCCCcHHHHHHHhcCceEEeccc-----------eEEEe---
Confidence            667766543221 1222333322  223458999999999999998888899999999972           33432   


Q ss_pred             cccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHH-------HhcCCcccccCc-hhHHHHHHHHHHHHh
Q psy5402          81 LRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEA-------LQYGFVSGVFTT-EEIERDLWPRIHAWA  145 (198)
Q Consensus        81 ~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA-------~~~Glv~~v~~~-~~l~~~a~~~a~~la  145 (198)
                              +         |++..+.  .+|+.+++++.       ..-|.+|.++++ ++..+.+++++.-+-
T Consensus       191 --------a---------GP~vv~~--~~Ge~v~~e~lGGa~~h~~~sGv~d~~~~de~ea~~~~r~~ls~lp  244 (512)
T TIGR01117       191 --------T---------GPQVIKT--VTGEEVTAEQLGGAMAHNSVSGVAHFIAEDDDDCIMLIRRLLSFLP  244 (512)
T ss_pred             --------c---------ChHHHHh--hcCcccchhhcchHHHhccccceeEEecCChHHHHHHHHHHHHhCC
Confidence                    1         2222221  24555555543       257999999875 456666666666554

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=97.15  E-value=0.0021  Score=58.46  Aligned_cols=88  Identities=27%  Similarity=0.342  Sum_probs=59.8

Q ss_pred             HHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhhHHHHHhcHHH
Q psy5402          23 VAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSV  102 (198)
Q Consensus        23 ~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~  102 (198)
                      ...+.. ..|+|+.+.|+|.|||..++..||++|+.++.           +.+++.                    |++.
T Consensus       125 ~~~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~-----------a~i~l~--------------------GP~v  172 (493)
T PF01039_consen  125 IARLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGT-----------ARIFLA--------------------GPRV  172 (493)
T ss_dssp             HHHHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTT-----------CEEESS--------------------THHH
T ss_pred             HHHHhc-CCCeEEEEccccccchhhcccccCccccCccc-----------eEEEec--------------------cccc
Confidence            344555 99999999999999999999999999999873           444321                    2222


Q ss_pred             HHHHHhcCCCCCHHH-------HHhcCCcccccCchh-HHHHHHHHHHHH
Q psy5402         103 ASELLYTGRKLNAQE-------ALQYGFVSGVFTTEE-IERDLWPRIHAW  144 (198)
Q Consensus       103 a~~lll~g~~~~a~e-------A~~~Glv~~v~~~~~-l~~~a~~~a~~l  144 (198)
                      ..  ..+|+.++.++       +...|.+|.++++++ ..+.++++..-+
T Consensus       173 v~--~~~Ge~~~~~~lgG~~~h~~~sG~~d~v~~de~~a~~~ir~~ls~l  220 (493)
T PF01039_consen  173 VE--SATGEEVDSEELGGADVHAAKSGVVDYVVDDEEDALAQIRRLLSYL  220 (493)
T ss_dssp             HH--HHHSSCTSHHHHHBHHHHHHTSSSSSEEESSHHHHHHHHHHHHHTS
T ss_pred             cc--cccCccccchhhhhhhhhcccCCCceEEEechHHHHHHHHHhhccc
Confidence            22  23568888765       347899999998753 344444444433

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=96.96  E-value=0.008  Score=55.78  Aligned_cols=43  Identities=14%  Similarity=0.114  Sum_probs=35.5

Q ss_pred             HHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCC
Q psy5402          18 TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTA   61 (198)
Q Consensus        18 ~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~   61 (198)
                      .+.+.+..+....|||||..++.+ -+|+.|+.+||-+++.+..
T Consensus       114 ei~~ai~~fk~sgKpVvA~~~~~~-s~~YylAs~AD~I~~~p~G  156 (584)
T TIGR00705       114 EIGSALSEFKDSGKPVYAYGTNYS-QGQYYLASFADEIILNPMG  156 (584)
T ss_pred             HHHHHHHHHHhcCCeEEEEEcccc-chhhhhhhhCCEEEECCCc
Confidence            455566667677899999988875 6789999999999999984

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=96.53  E-value=0.041  Score=50.89  Aligned_cols=114  Identities=17%  Similarity=0.080  Sum_probs=73.6

Q ss_pred             hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhh----hcCEEEeecCCcccCCCcccceEEEecccccccccCCchh
Q psy5402          15 TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLA----LCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCS   90 (198)
Q Consensus        15 ~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lal----acD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~   90 (198)
                      ......+++.++....+|.|+.|=|.|+|+|..-+.    ..|++++.++            ++       +|..++-+.
T Consensus       424 ~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~aM~g~~~~~d~~~awp~------------A~-------i~vmg~e~a  484 (569)
T PLN02820        424 IAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYGMCGRAYSPNFLFMWPN------------AR-------IGVMGGAQA  484 (569)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHHhcCcCCCCCEEEECCC------------Ce-------EEecCHHHH
Confidence            455677889999999999999999999998875543    4566666666            54       455554444


Q ss_pred             hhHHHH-Hh------------cHHHH-HHH--HhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcC
Q psy5402          91 SVLFPR-IF------------GNSVA-SEL--LYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL  147 (198)
Q Consensus        91 ~~~l~~-~v------------G~~~a-~~l--ll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~  147 (198)
                      ...+.+ .+            -...+ ++.  -..-+..++-.|.+.|+||+|+++.+........++.....
T Consensus       485 a~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aa~~~~vD~VIdP~dTR~~l~~~l~~~~~~  557 (569)
T PLN02820        485 AGVLAQIERENKKRQGIQWSKEEEEAFKAKTVEAYEREANPYYSTARLWDDGVIDPADTRRVLGLCLSAALNR  557 (569)
T ss_pred             HHHHHHHHhhhhhhccccCCccHHHHHHHHHHHHHHHhCCHHHHHHcCCcCcccCHHHHHHHHHHHHHHhhcC
Confidence            333332 11            00001 111  11122457777889999999999998887776666654443

>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]

Probab=96.41  E-value=0.0041  Score=56.46  Aligned_cols=31  Identities=35%  Similarity=0.448  Sum_probs=30.0

Q ss_pred             CCcEEEEEcCccchHHHHHhhhcCEEEeecC
Q psy5402          30 PKPLIAIVNGPAIGISATTLALCDIVFASDT   60 (198)
Q Consensus        30 ~kp~IA~v~G~a~GgG~~lalacD~~ia~~~   60 (198)
                      -+|.|+.|-|.|.|||..+...||++|+.++
T Consensus       163 ~IPqIsvv~G~c~gGgaY~pal~D~~imv~~  193 (526)
T COG4799         163 VIPQISVVMGPCAGGGAYSPALTDFVIMVRD  193 (526)
T ss_pred             CCCEEEEEEecCcccccccccccceEEEEcC
Confidence            3999999999999999999999999999998

>PRK10949 protease 4; Provisional

Probab=96.41  E-value=0.03  Score=52.27  Aligned_cols=44  Identities=16%  Similarity=0.143  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCC
Q psy5402          17 ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTA   61 (198)
Q Consensus        17 ~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~   61 (198)
                      +.+.+.+..+....|||||.-+.. .-+++.|+.+||-+++.+..
T Consensus       132 ~eI~~ai~~fk~sGKpVvA~~~~~-~s~~YyLASaAD~I~l~P~G  175 (618)
T PRK10949        132 QYIGKALREFRDSGKPVYAVGDSY-SQGQYYLASFANKIYLSPQG  175 (618)
T ss_pred             HHHHHHHHHHHHhCCeEEEEecCc-cchhhhhhhhCCEEEECCCc
Confidence            345566677777889999964444 46789999999999999884

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=96.16  E-value=0.02  Score=52.10  Aligned_cols=115  Identities=17%  Similarity=0.176  Sum_probs=72.6

Q ss_pred             hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhc----CEEEeecCCcccCCCcccceEEEecccccccccCCchh
Q psy5402          15 TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALC----DIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCS   90 (198)
Q Consensus        15 ~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalac----D~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~   90 (198)
                      ......+++.++..++.|+|..|-|.++|||.......    |+++|.++            ++++.       .++-+.
T Consensus       352 ~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~------------a~~~v-------m~~e~a  412 (493)
T PF01039_consen  352 IIRAGARLLYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPT------------AEIGV-------MGPEGA  412 (493)
T ss_dssp             HHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-------------EEES-------S-HHHH
T ss_pred             hHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhc------------ceeee-------cChhhh
Confidence            34566789999999999999999999999988665555    78888888            66654       333222


Q ss_pred             -hhHHHHHhcHH-------H--HHHHHh--cCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCC
Q psy5402          91 -SVLFPRIFGNS-------V--ASELLY--TGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLP  148 (198)
Q Consensus        91 -~~~l~~~vG~~-------~--a~~lll--~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~  148 (198)
                       ...+.+..-..       .  ..+.+-  .-+.-++..+...|++|.|+++.+..+.......-..+.+
T Consensus       413 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~D~ii~p~~tR~~l~~~l~~~~~~~  482 (493)
T PF01039_consen  413 ASILYRDELEAAEAEGADPEAQRAEKIAEYEDELSSPYRAASRGYVDDIIDPAETRKVLIAALEMLWQKP  482 (493)
T ss_dssp             HHHHTHHHHHHSCHCCHSHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEESSGGGHHHHHHHHHHHHTTSH
T ss_pred             heeeehhhhhhhhcccchhHHHHHHHHHHHHHhcCCHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHhCc
Confidence             22222211100       0  011111  1112578889999999999999998887777666555443

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]

Probab=95.42  E-value=0.092  Score=43.97  Aligned_cols=100  Identities=19%  Similarity=0.209  Sum_probs=72.5

Q ss_pred             HHHHHHhcCCCcEEEEEcCccchHH-HHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhhHHHHHhc
Q psy5402          21 KYVAAFIDYPKPLIAIVNGPAIGIS-ATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFG   99 (198)
Q Consensus        21 ~~~~~i~~~~kp~IA~v~G~a~GgG-~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG   99 (198)
                      ..+.++.+...|.|+.+..+..||= ..+++..|+.||-+.            |.+||.--++           +...+ 
T Consensus       186 aAl~~l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~------------AlIGFAGpRV-----------IEQTi-  241 (294)
T COG0777         186 AALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPG------------ALIGFAGPRV-----------IEQTI-  241 (294)
T ss_pred             HHHHHHHhcCCceEEEecCCCccchhHhHHhccCeeecCcc------------cccccCcchh-----------hhhhh-
Confidence            3466777889999999999999875 578999999999989            8877654442           11111 


Q ss_pred             HHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCH
Q psy5402         100 NSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP  149 (198)
Q Consensus       100 ~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~  149 (198)
                          ++-+-.| .=+++-.++.|+||.||+..++.+....+...+...++
T Consensus       242 ----re~LPeg-fQ~aEfLlehG~iD~iv~R~elr~tla~ll~~~~~~~~  286 (294)
T COG0777         242 ----REKLPEG-FQTAEFLLEHGMIDMIVHRDELRTTLASLLAKLTPQPA  286 (294)
T ss_pred             ----cccCCcc-hhhHHHHHHcCCceeeecHHHHHHHHHHHHHHhCCCCC
Confidence                2222222 23456678999999999999999888888777765544

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=95.13  E-value=0.098  Score=46.43  Aligned_cols=61  Identities=18%  Similarity=0.119  Sum_probs=52.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHc
Q psy5402         136 DLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWE---SEEFMNAITAFFN  196 (198)
Q Consensus       136 ~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~e~~~af~~  196 (198)
                      .+.+.++.+.+.+|.++..+-+++++....++.+.++.|......++.   ++||.||+++-+-
T Consensus       293 wa~~~~~~l~~~sP~Sl~vt~~~~~~~~~~~l~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~Li  356 (401)
T PLN02157        293 WCITTLRRLKESSPLSLKVALRSIREGRLQTLDQCLIREYRMSLQGLIGPMSGNFCEGVRARLI  356 (401)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHc
Confidence            445556677889999999999999988778999999999999888875   6999999999764

>KOG0840|consensus

Probab=93.30  E-value=0.54  Score=39.09  Aligned_cols=91  Identities=18%  Similarity=0.207  Sum_probs=50.1

Q ss_pred             HHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhh-----HH--
Q psy5402          22 YVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSV-----LF--   94 (198)
Q Consensus        22 ~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~-----~l--   94 (198)
                      ++..+..+.-||=..+=|.|.+-|..|..+-     +.+            -++.+|..++=|.-+.|+..     ..  
T Consensus       142 IYDtMq~ik~~V~Tic~G~Aas~aalLLaaG-----~KG------------~R~alPnsriMIhQP~gga~Gqa~Di~i~  204 (275)
T KOG0840|consen  142 IYDTMQYIKPDVSTICVGLAASMAALLLAAG-----AKG------------KRYALPNSRIMIHQPSGGAGGQATDIVIQ  204 (275)
T ss_pred             HHHHHHhhCCCceeeehhhHHhHHHHHHhcC-----CCc------------ceeecCCceeEEeccCCCcCccchHHHHH
Confidence            5566666666666666688887665554432     233            56777776665553322211     10  


Q ss_pred             -HHHh--------------c--HHHHHHHHhcCCCCCHHHHHhcCCcccccC
Q psy5402          95 -PRIF--------------G--NSVASELLYTGRKLNAQEALQYGFVSGVFT  129 (198)
Q Consensus        95 -~~~v--------------G--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~  129 (198)
                       ..++              |  .....+-+-.-+.++|+||+++||||.|.+
T Consensus       205 akE~~~~k~~l~~i~a~~Tgq~~e~i~~d~dRd~fmsa~EA~eyGliD~v~~  256 (275)
T KOG0840|consen  205 AKELMRIKEYLNEIYAKHTGQPLEVIEKDMDRDRFMSAEEAKEYGLIDKVID  256 (275)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcHHHHHhhhcccccCCHHHHHHhcchhhhhc
Confidence             0111              0  001111222334489999999999999986

>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]

Probab=88.08  E-value=2.6  Score=38.69  Aligned_cols=111  Identities=14%  Similarity=0.091  Sum_probs=68.2

Q ss_pred             HHHHHHHHHhcCCCcEEEEEcCccchHHHHHh----hhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhhH
Q psy5402          18 TLQKYVAAFIDYPKPLIAIVNGPAIGISATTL----ALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVL   93 (198)
Q Consensus        18 ~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~la----lacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~   93 (198)
                      +-.+++.++.+..+|.|..|-|.++|||...+    +.+|+.+                   ..|..+++...+-|....
T Consensus       385 ~Gakl~~A~aeatVPkitvI~rkayGga~~~M~~~~~~~~~~~-------------------AwP~a~iaVMG~egAv~i  445 (526)
T COG4799         385 HGAKLLYAVAEATVPKITVITRKAYGGAYYVMGGKALGPDFNY-------------------AWPTAEIAVMGPEGAVSI  445 (526)
T ss_pred             hhhHHHhhHhhccCCeEEEEecccccceeeeecCccCCCceeE-------------------ecCcceeeecCHHHHHHH
Confidence            44578999999999999999999999997533    2344444                   445555555443333322


Q ss_pred             HH-HHhcH-HH--H--------HHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcC
Q psy5402          94 FP-RIFGN-SV--A--------SELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL  147 (198)
Q Consensus        94 l~-~~vG~-~~--a--------~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~  147 (198)
                      +. +.+.. .+  .        ..--+.-+.-.+--|.+.|++|.|+++.+........+..+...
T Consensus       446 ~~~k~l~~~~~~~~~~~~~~~~~~~eY~~~~~~p~~aa~r~~iD~vI~p~~tR~~L~~~l~~~~~k  511 (526)
T COG4799         446 LYRKELAAAERPEEREALLRKQLIAEYEEQFSNPYYAAERGYIDAVIDPADTRAVLGRALSALANK  511 (526)
T ss_pred             HHHHHhhcccCchhHHHHHHHHHHHHHHHhccchHHHHHhCCCCcccCHHHHHHHHHHHHHHHhcC
Confidence            22 22211 00  0        11111222345666788999999999888777666666665544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	198
2f6q_A	280	The Crystal Structure Of Human Peroxisomal Delta3,		9e-43
2gtr_A	261	Human Chromodomain Y-Like Protein Length = 261		4e-35
2fbm_A	291	Acetyltransferase Domain Of Cdy1 Length = 291		2e-30
2fw2_A	260	Catalytic Domain Of Cdy Length = 260		3e-30
3fdu_A	266	Crystal Structure Of A Putative Enoyl-Coa Hydratase		4e-16
3qmj_A	256	Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 Fr		4e-15
1ey3_A	258	Structure Of Enoyl-Coa Hydratase Complexed With The		3e-13
1mj3_A	260	Crystal Structure Analysis Of Rat Enoyl-Coa Hydrata		3e-13
1dub_A	261	2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph		3e-13
2hw5_A	286	The Crystal Structure Of Human Enoyl-Coenzyme A (Co		7e-12
4fzw_A	258	Crystal Structure Of The Paaf-paag Hydratase-isomer		4e-11
1hno_A	280	Crystal Structure Of Peroxisomal Delta3-delta2-enoy		5e-11
3kqf_A	265	1.8 Angstrom Resolution Crystal Structure Of Enoyl-		6e-11
3p5m_A	255	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		1e-10
2uzf_A	273	Crystal Structure Of Staphylococcus Aureus 1,4-Dihy		1e-09
3hrx_A	254	Crystal Structure Of Phenylacetic Acid Degradation		2e-09
1ef8_A	261	Crystal Structure Of Methylmalonyl Coa Decarboxylas		3e-09
2vx2_A	287	Crystal Structure Of Human Enoyl Coenzyme A Hydrata		3e-09
3pea_A	261	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		3e-09
1szo_A	257	Crystal Structure Analysis Of The 6-Oxo Camphor Hyd		8e-09
3qre_A	298	Crystal Structure Of An Enoyl-Coa Hydratase Echa12_		8e-09
1jxz_A	269	Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coe		1e-08
1o8u_A	257	The 2 Angstrom Structure Of 6-oxo Camphor Hydrolase		1e-08
2iex_A	272	Crystal Structure Of Dihydroxynapthoic Acid Synthet		1e-08
2pbp_A	258	Crystal Structure Of Enoyl-Coa Hydrates Subunit I (		2e-08
2vre_A	296	Crystal Structure Of Human Peroxisomal Delta3,5, De		2e-08
3pzk_A	257	Crystal Structure Of The Mycobacterium Tuberculosis		3e-08
3q0j_A	258	Crystal Structure Of The Mycobacterium Tuberculosis		3e-08
1dci_A	275	Dienoyl-Coa Isomerase Length = 275		3e-08
3h81_A	278	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		3e-08
1nzy_A	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		4e-08
1nzy_B	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		4e-08
3ome_A	282	Crystal Structure Of A Probable Enoyl-Coa Hydratase		5e-08
4di1_A	277	Crystal Structure Of Enoyl-Coa Hydratase Echa17 Fro		9e-08
1uiy_A	253	Crystal Structure Of Enoyl-Coa Hydratase From Therm		2e-07
3moy_A	263	Crystal Structure Of Probable Enoyl-Coa Hydratase F		3e-07
3t3w_A	279	Crystal Structure Of Probable Enoyl-Coa Hydratase F		4e-07
3sll_A	290	Crystal Structure Of A Probable Enoyl-Coa Hydratase		5e-07
3qxz_A	265	Crystal Structure Of A Probable Enoyl-Coa Hydratase		1e-06
4els_A	285	Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Co		2e-06
3t88_A	289	Crystal Structure Of Escherichia Coli Menb In Compl		2e-06
4eml_A	275	Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoy		3e-06
3pe8_A	256	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		5e-06
3rsi_A	265	The Structure Of A Putative Enoyl-Coa HydrataseISOM		6e-06
3lke_A	263	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		1e-05
2q35_A	243	Crystal Structure Of The Y82f Variant Of Ech2 Decar		2e-05
3h02_A	288	2.15 Angstrom Resolution Crystal Structure Of Napht		2e-05
3rrv_A	276	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		3e-05
4f47_A	278	The Structure Of Enoyl-Coa Hydratase Echa19 From My		4e-05
3r9q_A	262	Structure Of A Probable Enoyl-Coa HydrataseISOMERAS		5e-05
3r0o_A	273	Crystal Structure Of Carnitinyl-Coa Hydratase From		5e-05
2q2x_A	243	Crystal Structure Of The Ech2 Decarboxylase Domain		5e-05
3he2_A	264	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		8e-05
3qk8_A	272	Crystal Structure Of Enoyl-Coa Hydratase Echa15 Fro		1e-04
2j5g_D	263	The Native Structure Of A Beta-Diketone Hydrolase F		1e-04
2j5g_A	263	The Native Structure Of A Beta-Diketone Hydrolase F		1e-04
3r9s_A	267	Structure Of A Carnitinyl-Coa Dehydratase From Myco		2e-04
3r9t_A	267	Structure Of Echa1_1 From Mycobacterium Paratubercu		2e-04
3zwb_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		2e-04
3trr_A	256	Crystal Structure Of A Probable Enoyl-Coa Hydratase		2e-04
3zw8_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		3e-04
2x58_A	727	The Crystal Structure Of Mfe1 Liganded With Coa Len		3e-04
3qyr_A	253	Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 M		4e-04
3p85_A	270	Crystal Structure Enoyl-Coa Hydratase From Mycobact		4e-04
2ppy_A	265	Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) F		4e-04
2a7k_A	250	Carboxymethylproline Synthase (carb) From Pectobact		4e-04
1q51_A	314	Crystal Structure Of Mycobacterium Tuberculosis Men		5e-04
1rjm_A	339	Crystal Structure Of Menb (rv0548c) From Mycobacter		5e-04
3t8a_A	334	Crystal Structure Of Mycobacterium Tuberculosis Men		6e-04
3tlf_A	274	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		7e-04
4fzw_C	274	Crystal Structure Of The Paaf-paag Hydratase-isomer		8e-04

>pdb|2F6Q|A Chain A, The Crystal Structure Of Human Peroxisomal Delta3, Delta2 Enoyl Coa Isomerase (Peci) Length = 280

Iteration: 1
 Score =  169 bits (428), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 83/194 (42%), Positives = 119/194 (61%), Gaps = 12/194 (6%)
Query: 5   PTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILL 64
           P  +  +  + ++ L+++V  FID+PKPLIA+VNGPA+GIS T L L D V+ASD     
Sbjct: 96  PGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASD----- 150
Query: 65  NHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFV 124
                  +ATFHTPF+  G +PEGCSS  FP+I   + A+E L  G+KL A EA   G V
Sbjct: 151 -------RATFHTPFSHLGQSPEGCSSYTFPKIXSPAKATEXLIFGKKLTAGEACAQGLV 203
Query: 125 SGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWES 184
           + VF     ++++W R+ A+AKLPP ++  +K+++R      LH  N  EC  L+ RW S
Sbjct: 204 TEVFPDSTFQKEVWTRLKAFAKLPPNALRISKEVIRKREREKLHAVNAEECNVLQGRWLS 263
Query: 185 EEFMNAITAFFNRK 198
           +E  NA+  F +RK
Sbjct: 264 DECTNAVVNFLSRK 277

>pdb|2GTR|A Chain A, Human Chromodomain Y-Like Protein Length = 261

Iteration: 1
 Score =  144 bits (362), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 75/192 (39%), Positives = 113/192 (58%), Gaps = 12/192 (6%)
Query: 7   DLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNH 66
           D   E T  +  ++ +V  FI + KP+I  VNGPAIG+ A+ L LCD+V+A++       
Sbjct: 78  DRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANE------- 130
Query: 67  PVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSG 126
                +A F TP+T  G +P+GCS+V+FP+I G + A+E+L +GRKL AQEA   G VS 
Sbjct: 131 -----KAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQ 185
Query: 127 VFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEE 186
           VF      +++  RI   A   P  +  +K LVR  M   L +AN+REC+ L++ W S +
Sbjct: 186 VFWPGTFTQEVMVRIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLKKIWGSAQ 245
Query: 187 FMNAITAFFNRK 198
            M+++  +  RK
Sbjct: 246 GMDSMLKYLQRK 257

>pdb|2FBM|A Chain A, Acetyltransferase Domain Of Cdy1 Length = 291

Iteration: 1
 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/174 (37%), Positives = 103/174 (59%), Gaps = 12/174 (6%)
Query: 18  TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHT 77
           T++ +V  FI + KP++  VNGPAIG+ A+ L LCD+V+A++            +A F T
Sbjct: 107 TIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANE------------KAWFQT 154
Query: 78  PFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDL 137
           P+T  G +P+GCSS+ FP++ G + A+E+L  GRKL A+EA   G VS VF T    +++
Sbjct: 155 PYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEV 214
Query: 138 WPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAI 191
             +I   A   P  +   K LVR  +   L +AN+REC+ L + W S + + ++
Sbjct: 215 MIQIKELASYNPIVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESM 268

>pdb|2FW2|A Chain A, Catalytic Domain Of Cdy Length = 260

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 104/181 (57%), Gaps = 12/181 (6%)
Query: 18  TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHT 77
           T++ +V  FI + KP++  VNGPAIG+ A+ L LCD+V+A++            +A F T
Sbjct: 88  TIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANE------------KAWFQT 135
Query: 78  PFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDL 137
           P+T  G +P+GCSS+ FP++ G + A+E+L  GRKL A+EA   G VS VF T    +++
Sbjct: 136 PYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEV 195
Query: 138 WPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNR 197
             +I   A      +   K LVR  +   L +AN+REC+ L + W S + + ++  +   
Sbjct: 196 MIQIKELASYNAIVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVEN 255
Query: 198 K 198
           K
Sbjct: 256 K 256

>pdb|3FDU|A Chain A, Crystal Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Acinetobacter Baumannii Length = 266

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 81/168 (48%), Gaps = 15/168 (8%)
Query: 31  KPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCS 90
           KPLI  V G AIGI  T L   D+VFA +TA+            F  PF   G++PEG +
Sbjct: 100 KPLIIAVKGVAIGIGVTILLQADLVFADNTAL------------FQIPFVSLGLSPEGGA 147
Query: 91  SVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQ 150
           S L  +  G   A+ELL+T +K NA+ ALQ G V+ +   E+              LP  
Sbjct: 148 SQLLVKQAGYHKAAELLFTAKKFNAETALQAGLVNEI--VEDAYATAQATAQHLTALPLA 205
Query: 151 SMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198
           S+   K L++   L  + E    E +   +R +S E + A+ AF  ++
Sbjct: 206 SLKQTKALMKHD-LDQIIECIDHEAEIFMQRVQSPEMLEAVQAFMQKR 252

>pdb|3QMJ|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 From Mycobacterium Marinum Length = 256

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 12/168 (7%)
Query: 13  TDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQ 72
           ++     +  + A   +PKPLI  VNG  +GI AT L   D+ F S TA L         
Sbjct: 82  SEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARL--------- 132
Query: 73  ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 132
                PFT  G+ PE  SS L P++ G   A+ LL +   ++A+EAL+ G V  + + EE
Sbjct: 133 ---KCPFTSLGVAPEAASSYLLPQLVGRQNAAWLLMSSEWIDAEEALRMGLVWRICSPEE 189
Query: 133 IERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEE 180
           +  +        A  P  S++  K  +  P  + +  A+ RE     E
Sbjct: 190 LLPEARRHAEILAAKPISSLMAVKHTMVEPNRAQIAAASARENAHFAE 237

>pdb|1EY3|A Chain A, Structure Of Enoyl-Coa Hydratase Complexed With The Substrate Dac-Coa Length = 258

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 18/172 (10%)
Query: 30  PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
            KP+IA VNG A+G       +CDI++A +            +A F  P  L G  P   
Sbjct: 95  KKPVIAAVNGYALGGGCELAMMCDIIYAGE------------KAQFGQPEILLGTIPGAG 142
Query: 90  SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP 149
            +    R  G S+A E++ TG +++AQ+A Q G VS +F  E +   +   I    K+  
Sbjct: 143 GTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETL---VEEAIQCAEKIAN 199
Query: 150 QSMI---FAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198
            S I    AK+ V       L E NK E K     + +++    ++AF  ++
Sbjct: 200 NSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKR 251

>pdb|1MJ3|A Chain A, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In Complex With Hexadienoyl-Coa Length = 260

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 18/172 (10%)
Query: 30  PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
            KP+IA VNG A+G       +CDI++A +            +A F  P  L G  P   
Sbjct: 97  KKPVIAAVNGYALGGGCELAMMCDIIYAGE------------KAQFGQPEILLGTIPGAG 144
Query: 90  SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP 149
            +    R  G S+A E++ TG +++AQ+A Q G VS +F  E +   +   I    K+  
Sbjct: 145 GTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETL---VEEAIQCAEKIAN 201
Query: 150 QSMI---FAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198
            S I    AK+ V       L E NK E K     + +++    ++AF  ++
Sbjct: 202 NSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKR 253

>pdb|1DUB|A Chain A, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5 Length = 261

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 18/172 (10%)
Query: 30  PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
            KP+IA VNG A+G       +CDI++A +            +A F  P  L G  P   
Sbjct: 98  KKPVIAAVNGYALGGGCELAMMCDIIYAGE------------KAQFGQPEILLGTIPGAG 145
Query: 90  SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP 149
            +    R  G S+A E++ TG +++AQ+A Q G VS +F  E +   +   I    K+  
Sbjct: 146 GTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETL---VEEAIQCAEKIAN 202
Query: 150 QSMI---FAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198
            S I    AK+ V       L E NK E K     + +++    ++AF  ++
Sbjct: 203 NSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKR 254

>pdb|2HW5|A Chain A, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa) Hydratase Short Chain 1, Echs1 Length = 286

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 18/172 (10%)
Query: 30  PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
            KP+IA VNG A G       +CDI++A +            +A F  P  L G  P   
Sbjct: 123 KKPVIAAVNGYAFGGGCELAMMCDIIYAGE------------KAQFAQPEILIGTIPGAG 170
Query: 90  SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP 149
            +    R  G S+A E++ TG +++AQ+A Q G VS +   E +   +   I    K+  
Sbjct: 171 GTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKICPVETL---VEEAIQCAEKIAS 227
Query: 150 QSMI---FAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198
            S I    AK+ V       L E +K E K     + +++    +TAF  ++
Sbjct: 228 NSKIVVAMAKESVNAAFEMTLTEGSKLEKKLFYSTFATDDRKEGMTAFVEKR 279

>pdb|4FZW|A Chain A, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 258

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 12/170 (7%)
Query: 29  YPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
           + KPLIA VNG A+G       LCD+V A +             A F  P    G+ P  
Sbjct: 94  FNKPLIAAVNGYALGAGCELALLCDVVVAGEN------------ARFGLPEITLGIMPGA 141
Query: 89  CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLP 148
             +    R  G S+AS+++ +G  + AQ+A Q G VS VF ++             A+  
Sbjct: 142 GGTQRLIRSVGKSLASKMVLSGESITAQQAQQAGLVSDVFPSDLTLEYALQLASKMARHS 201
Query: 149 PQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198
           P ++  AKQ +R      L     +E +       +E+    I+AF  ++
Sbjct: 202 PLALQAAKQALRQSQEVALQAGLAQERQLFTLLAATEDRHEGISAFLQKR 251

>pdb|1HNO|A Chain A, Crystal Structure Of Peroxisomal Delta3-delta2-enoyl-coa Isomerase From Saccharomyces Cerevisiae Length = 280

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 78/171 (45%), Gaps = 23/171 (13%)
Query: 25  AFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGM 84
           AFI + K LI  +NGPAIG+SA  +ALCDIV++      +N  V++L      PF   G+
Sbjct: 107 AFIKHSKVLICCLNGPAIGLSAALVALCDIVYS------INDKVYLLY-----PFANLGL 155
Query: 85  TPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFT---------TEEIER 135
             EG ++V  P  FG +   E L   +        + GF+S  F            ++  
Sbjct: 156 ITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLE 215
Query: 136 DLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEE 186
           +L  ++     LP  S +  K+L++   +   ++AN  E     + W   E
Sbjct: 216 ELREKVKGLY-LP--SCLGMKKLLKSNHIDAFNKANSVEVNESLKYWVDGE 263

>pdb|3KQF|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis. Length = 265

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 80/170 (47%), Gaps = 14/170 (8%)
Query: 30  PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
           P+P+IA +NG A+G   T L+L CD   A+++A L             T  TL  + P  
Sbjct: 102 PQPVIAAINGIALG-GGTELSLACDFRIAAESASL-----------GLTETTL-AIIPGA 148
Query: 89  CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLP 148
             +   PR+ G   A EL+YTGR+++AQEA +YG V  V     +E          A   
Sbjct: 149 GGTQRLPRLIGVGRAKELIYTGRRISAQEAKEYGLVEFVVPVHLLEEKAIEIAEKIASNG 208
Query: 149 PQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198
           P ++  AK+ +   +   LH   + E +  E    +++ +  + AF  ++
Sbjct: 209 PIAVRLAKEAISNGIQVDLHTGLQXEKQAYEGVIHTKDRLEGLQAFKEKR 258

>pdb|3P5M|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Avium Length = 255

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 12/115 (10%)
Query: 20  QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPF 79
            + V A    PKP+IA V+G A+G   +    CD+V A+  +             F   F
Sbjct: 82  NRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASY------------FQLAF 129
Query: 80  TLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE 134
           T  G+ P+G +S L P + G +  S +  T  K++A  A ++G +S + + +E E
Sbjct: 130 TRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGMISHITSADEYE 184

>pdb|2UZF|A Chain A, Crystal Structure Of Staphylococcus Aureus 1,4-Dihydroxy-2- Naphthoyl Coa Synthase (Menb) In Complex With Acetoacetyl Coa Length = 273

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 56/127 (44%), Gaps = 12/127 (9%)
Query: 30  PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
           PKP+IA+V G A+G       +CD+  A+D AI            F       G    G 
Sbjct: 107 PKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAI------------FGQTGPKVGSFDAGY 154
Query: 90  SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP 149
            S    RI G+  A E+ Y  R+ NAQEAL  G V+ V   E++E +         K  P
Sbjct: 155 GSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPLEKVEDETVQWCKEIMKHSP 214
Query: 150 QSMIFAK 156
            ++ F K
Sbjct: 215 TALRFLK 221

>pdb|3HRX|A Chain A, Crystal Structure Of Phenylacetic Acid Degradation Protein Paag Length = 254

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 87/197 (44%), Gaps = 17/197 (8%)
Query: 6   TDLINEDTDTSITLQKY---VAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTA 61
           T+  +   D    L++Y   V A     KPL+  VNG A G +  +LAL  D+  A+   
Sbjct: 64  TEFGDRKPDYEAHLRRYNRVVEALSGLEKPLVVAVNGVAAG-AGMSLALWGDLRLAA--- 119
Query: 62  ILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQY 121
                    + A+F T F   G+ P+   S L PR+ G + A ELL    +L+A+EAL  
Sbjct: 120 ---------VGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLLLSPRLSAEEALAL 170
Query: 122 GFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEER 181
           G V  V   E++  +        A+ P ++    K+L+       L EA   E     + 
Sbjct: 171 GLVHRVVPAEKLMEEALSLAKELAQGPTRAYALTKKLLLETYRLSLTEALALEAVLQGQA 230
Query: 182 WESEEFMNAITAFFNRK 198
            ++++    + AF  ++
Sbjct: 231 GQTQDHEEGVRAFREKR 247

>pdb|1EF8|A Chain A, Crystal Structure Of Methylmalonyl Coa Decarboxylase Length = 261

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 18/174 (10%)
Query: 29  YPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
           +PKP+I++V G   G +   +   D++ A+ T+     PV         P+ L G+    
Sbjct: 95  FPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPV-----NLGVPYNLVGIHN-- 147
Query: 89  CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLP 148
                  R  G  +  EL++T   + AQ AL  G ++ V   EE+E       H  ++  
Sbjct: 148 -----LTRDAGFHIVKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKA 202
Query: 149 PQSMIFAKQLVRVPMLSMLHEANKRECKRLEER----WESEEFMNAITAFFNRK 198
           P ++   K+ +RV  L   H  N  E +R++      ++SE++   + AF  ++
Sbjct: 203 PLAIAVIKEELRV--LGEAHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKR 254

>pdb|2VX2|A Chain A, Crystal Structure Of Human Enoyl Coenzyme A Hydratase Domain-Containing Protein 3 (Echdc3) Length = 287

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 17/121 (14%)
Query: 18  TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHT 77
           T  K +    ++P P+IA+VNG A       +A CDI  ASD            +++F T
Sbjct: 114 TCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASD------------KSSFAT 161
Query: 78  PFTLRGMTPEGCSS--VLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIER 135
           P    G+    CS+  V   R     VA E+L+TG  ++AQEAL +G +S V    E++ 
Sbjct: 162 PGVNVGLF---CSTPGVALARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAELQE 218
Query: 136 D 136
           +
Sbjct: 219 E 219

>pdb|3PEA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis Str. 'ames Ancestor' Length = 261

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 70/168 (41%), Gaps = 12/168 (7%)
Query: 31  KPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCS 90
           KP+IA ++G A+G        C   FA+++A  L  P   L           G+ P    
Sbjct: 99  KPVIAAIHGAALGGGLEFAXSCHXRFATESA-KLGLPELTL-----------GLIPGFAG 146
Query: 91  SVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQ 150
           +   PR  G + A E   T   +   EAL++G V+GVF  E    D        A   P 
Sbjct: 147 TQRLPRYVGKAKACEXXLTSTPITGAEALKWGLVNGVFAEETFLDDTLKVAKQIAGKSPA 206
Query: 151 SMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198
           +     +L++    S  +E  +RE +   E + SE+    + AF  ++
Sbjct: 207 TARAVLELLQTTKSSHYYEGVQREAQIFGEVFTSEDGREGVAAFLEKR 254

>pdb|1SZO|A Chain A, Crystal Structure Analysis Of The 6-Oxo Camphor Hydrolase His122ala Mutant Bound To Its Natural Product (2s,4s)- Alpha-Campholinic Acid Length = 257

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 21/160 (13%)
Query: 20  QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPF 79
           Q+ +   +    P+IA VNGP        + + DIV A+++A   + P        H P 
Sbjct: 98  QRLLNNLLSIEVPVIAAVNGPVTNAPEIPV-MSDIVLAAESATFQDGP--------HFP- 147
Query: 80  TLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWP 139
              G+ P   + V++P + G++     L TG++L+A+ AL YG V+ V + +E+    W 
Sbjct: 148 --SGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSEQELLPRAWE 205
Query: 140 RIHAWAKLPPQSMIFA-----KQLVRVP----MLSMLHEA 170
                A+ P  +  +A     +QL RV      L + HEA
Sbjct: 206 LARGIAEKPLLARRYARKVLTRQLRRVMEADLSLGLAHEA 245

>pdb|3QRE|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase Echa12_1 From Mycobacterium Marinum Length = 298

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 85/200 (42%), Gaps = 30/200 (15%)
Query: 4   NPTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAIL 63
           N  DL+ E     +T+ +         KP+IA +NGP +GI  T   +CD+ FA+     
Sbjct: 113 NLADLVGERPPHFVTMLR---------KPVIAAINGPCVGIGLTQALMCDVRFAA----- 158
Query: 64  LNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGF 123
                    A F   F  RG+  E   S + PR+   +VA +LL +GR   A+EA Q G 
Sbjct: 159 -------AGAKFAAVFARRGLIAEFGISWILPRLTSWAVALDLLLSGRTFLAEEAAQLGL 211
Query: 124 VSGVFTTEEIERDLWPRIHAWAK-----LPPQSMIFAKQLVRVPMLSMLHEANKRECKRL 178
           V  V T E+    L PR   +A+       P SM   K+ V       + EA       L
Sbjct: 212 VKEVVTPEQ----LMPRALEYAEDIARYCSPSSMAVIKRQVYGDATRDVVEATSHAEVLL 267
Query: 179 EERWESEEFMNAITAFFNRK 198
            E     + +  I +F  ++
Sbjct: 268 REAMPRPDVIEGIVSFLEKR 287

>pdb|1JXZ|A Chain A, Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coenzyme A Dehalogenase Complexed With 4-Hydroxybenzoyl-Coenzyme A (Product) Length = 269

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 72/177 (40%), Gaps = 12/177 (6%)
Query: 20  QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPF 79
           Q+ +   I   +P++A +NG A G          I  ASD AI  +   FV    +HT  
Sbjct: 90  QQMIHKIIRVKRPVLAAINGVAAG------GGLGISLASDMAICADSAKFV--CAWHTI- 140
Query: 80  TLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWP 139
              G+  +  +S    RI G   A EL+ T R L  +EA  +G VS V+  +E     W 
Sbjct: 141 ---GIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWK 197
Query: 140 RIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN 196
                A  P    + AK+      +  + E  + E + +        FM  +T F +
Sbjct: 198 VARELAAAPTHLQVMAKERFHAGWMQPVEECTEFEIQNVIASVTHPHFMPCLTRFLD 254

>pdb|1O8U|A Chain A, The 2 Angstrom Structure Of 6-oxo Camphor Hydrolase: New Structural Diversity In The Crotonase Superfamily Length = 257

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 21/160 (13%)
Query: 20  QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPF 79
           Q+ +   +    P+IA VNGP        + + DIV A+++A   + P        H P 
Sbjct: 98  QRLLNNLLSIEVPVIAAVNGPVTNHPEIPV-MSDIVLAAESATFQDGP--------HFP- 147
Query: 80  TLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWP 139
              G+ P   + V++P + G++     L TG++L+A+ AL YG V+ V + +E+    W 
Sbjct: 148 --SGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSEQELLPRAWE 205
Query: 140 RIHAWAKLPPQSMIFA-----KQLVRVP----MLSMLHEA 170
                A+ P  +  +A     +QL RV      L + HEA
Sbjct: 206 LARGIAEKPLLARRYARKVLTRQLRRVMEADLSLGLAHEA 245

>pdb|2IEX|A Chain A, Crystal Structure Of Dihydroxynapthoic Acid Synthetase (Gk2873) From Geobacillus Kaustophilus Hta426 Length = 272

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 30  PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
           PKP+IA+V G AIG       +CD+  A+D AI            F       G    G 
Sbjct: 106 PKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAI------------FGQTGPKVGSFDGGY 153
Query: 90  SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERD 136
            +    RI G+  A E+ Y  R+  AQEAL+ G V+ V   E++E +
Sbjct: 154 GAGYLARIVGHKKAREIWYLCRQYTAQEALEMGLVNKVVPLEQLEEE 200

>pdb|2PBP|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates Subunit I (Gk_2039) From Geobacillus Kaustophilus Hta426 Length = 258

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 89/200 (44%), Gaps = 21/200 (10%)
Query: 6   TDLINEDTDTSITLQKYVAAFIDYPK------PLIAIVNGPAIGISATTLAL-CDIVFAS 58
            D+     D  I L+ ++  F D+ +      P+IA VNG A+G     LAL CD++ AS
Sbjct: 66  ADIQEMAKDDPIRLE-WLNQFADWDRLSIVKTPMIAAVNGLALG-GGFELALSCDLIVAS 123
Query: 59  DTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEA 118
             A             F  P    G+ P    +    ++ G   A E L+TG +++A+EA
Sbjct: 124 SAA------------EFGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWLWTGARMSAKEA 171
Query: 119 LQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRL 178
            Q G V+ V + E +  +        A+ PP ++   K+ V+  +   L+E  + E K  
Sbjct: 172 EQLGIVNRVVSPELLMEETMRLAGRLAEQPPLALRLIKEAVQKAVDYPLYEGMQFERKNF 231
Query: 179 EERWESEEFMNAITAFFNRK 198
              + SE+    + AF  ++
Sbjct: 232 YLLFASEDQKEGMAAFLEKR 251

>pdb|2VRE|A Chain A, Crystal Structure Of Human Peroxisomal Delta3,5, Delta2,4-Dienoyl Coa Isomerase Length = 296

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 13/108 (12%)
Query: 30  PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
           PKP+IA V+G  IG     +  CDI + +  A      V V            G+  +  
Sbjct: 134 PKPVIAAVHGGCIGGGVDLVTACDIRYCAQDAFFQVKEVDV------------GLAADVG 181
Query: 90  SSVLFPRIFGN-SVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERD 136
           +    P++ GN S+ +EL +T RK+ A EAL  G VS VF  +E+  D
Sbjct: 182 TLQRLPKVIGNQSLVNELAFTARKMMADEALGSGLVSRVFPDKEVMLD 229

>pdb|3PZK|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Apo Form Length = 257

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 12/167 (7%)
Query: 32  PLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSS 91
           P IA V G A+G       +CD++ A+DT            A F  P    G+ P    S
Sbjct: 96  PTIAAVAGYALGGGCELAMMCDVLIAADT------------AKFGQPEIKLGVLPGMGGS 143
Query: 92  VLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQS 151
               R  G + A +L+ TGR ++A EA + G VS V   +++  +        +++   +
Sbjct: 144 QRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMSASA 203
Query: 152 MIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198
              AK+ V     S L E    E +     + +E+    + AF  ++
Sbjct: 204 ARMAKEAVNRAFESSLSEGLLYERRLFHSAFATEDQSEGMAAFIEKR 250

>pdb|3Q0J|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Complex With The Inhibitor Acetoacetylcoa Length = 258

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 12/167 (7%)
Query: 32  PLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSS 91
           P IA V G A+G       +CD++ A+DT            A F  P    G+ P    S
Sbjct: 97  PTIAAVAGYALGGGCELAMMCDVLIAADT------------AKFGQPEIKLGVLPGMGGS 144
Query: 92  VLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQS 151
               R  G + A +L+ TGR ++A EA + G VS V   +++  +        +++   +
Sbjct: 145 QRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMSASA 204
Query: 152 MIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198
              AK+ V     S L E    E +     + +E+    + AF  ++
Sbjct: 205 ARMAKEAVNRAFESSLSEGLLYERRLFHSAFATEDQSEGMAAFIEKR 251

>pdb|1DCI|A Chain A, Dienoyl-Coa Isomerase Length = 275

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 13/105 (12%)
Query: 30  PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
           PKP+IA ++G  IG     ++ CDI + +  A      V V            G+  +  
Sbjct: 107 PKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDV------------GLAADVG 154
Query: 90  SSVLFPRIFGN-SVASELLYTGRKLNAQEALQYGFVSGVFTTEEI 133
           +    P++ GN S+ +EL +T RK+ A EAL  G VS VF  +++
Sbjct: 155 TLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDV 199

>pdb|3H81|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 278

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 12/167 (7%)
Query: 32  PLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSS 91
           P IA V G A+G       +CD++ A+DT            A F  P    G+ P    S
Sbjct: 117 PTIAAVAGYALGGGCELAMMCDVLIAADT------------AKFGQPEIKLGVLPGMGGS 164
Query: 92  VLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQS 151
               R  G + A +L+ TGR ++A EA + G VS V   +++  +        +++   +
Sbjct: 165 QRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMSASA 224
Query: 152 MIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198
              AK+ V     S L E    E +     + +E+    + AF  ++
Sbjct: 225 ARMAKEAVNRAFESSLSEGLLYERRLFHSAFATEDQSEGMAAFIEKR 271

>pdb|1NZY|A Chain A, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 71/177 (40%), Gaps = 12/177 (6%)
Query: 20  QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPF 79
            + +   I   +P++A +NG A G          I  ASD AI  +   FV    +HT  
Sbjct: 90  HQMIHKIIRVKRPVLAAINGVAAG------GGLGISLASDMAICADSAKFV--CAWHTI- 140
Query: 80  TLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWP 139
              G+  +  +S    RI G   A EL+ T R L  +EA  +G VS V+  +E     W 
Sbjct: 141 ---GIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWK 197
Query: 140 RIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN 196
                A  P    + AK+      +  + E  + E + +        FM  +T F +
Sbjct: 198 VARELAAAPTHLQVMAKERFHAGWMQPVEECTEFEIQNVIASVTHPHFMPCLTRFLD 254

>pdb|1NZY|B Chain B, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 71/177 (40%), Gaps = 12/177 (6%)
Query: 20  QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPF 79
            + +   I   +P++A +NG A G          I  ASD AI  +   FV    +HT  
Sbjct: 90  HQMIHKIIRVKRPVLAAINGVAAG------GGLGISLASDMAICADSAKFV--CAWHTI- 140
Query: 80  TLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWP 139
              G+  +  +S    RI G   A EL+ T R L  +EA  +G VS V+  +E     W 
Sbjct: 141 ---GIGNDTATSYSLARIVGMRRAMELMLTDRTLYPEEAKDWGLVSRVYPKDEFREVAWK 197
Query: 140 RIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN 196
                A  P    + AK+      +  + E  + E + +        FM  +T F +
Sbjct: 198 VARELAAAPTHLQVMAKERFHAGWMQPVEECTEFEIQNVIASVTHPHFMPCLTRFLD 254

>pdb|3OME|A Chain A, Crystal Structure Of A Probable Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 282

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 73/151 (48%), Gaps = 27/151 (17%)
Query: 19  LQKYVAAFIDY-------PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVL 71
           +Q     ++DY       PKP IA V G  I         CD++ ASD A L + PV ++
Sbjct: 102 IQHEARRYLDYTLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLILASDDA-LFSDPVALM 160
Query: 72  QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 131
                    + G+   G +  L PR      A E+L+TGR L A+EA + G V+ V   +
Sbjct: 161 --------GIGGVEYHGHTWELGPR-----KAKEILFTGRALTAEEAERTGMVNRVVARD 207
Query: 132 EIE---RDLWPRIHAWAKLPPQSMIFAKQLV 159
           E++   R+L  +I   A +PP ++  AK+ V
Sbjct: 208 ELDAQTRELAEQI---ATMPPFALRQAKRAV 235

>pdb|4DI1|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From Mycobacterium Marinum Length = 277

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 21/152 (13%)
Query: 12  DTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVL 71
           DT   + L+  + A    PKP +A V G A+G   T     D   + D            
Sbjct: 98  DTAARVRLEA-IDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGD------------ 144
Query: 72  QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 131
              F     L G+ P G       R+ G+S A EL+++GR  +A+EAL  G +  +   +
Sbjct: 145 NVKFGATEILAGLIPGGGGMGRLTRVVGSSRAKELVFSGRFFDAEEALALGLIDDMVAPD 204
Query: 132 EIERDLWPRIHAWAK----LPPQSMIFAKQLV 159
               D++    AWA+     PP+++  AK ++
Sbjct: 205 ----DVYDSAVAWARRYLECPPRALAAAKAVI 232

>pdb|1UIY|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Thermus Thermophilus Hb8 Length = 253

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 76/191 (39%), Gaps = 17/191 (8%)
Query: 10  NEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVF 69
            E+   S++L +       YPKP +A VNGPA+   A     CD+V   + A L    V 
Sbjct: 74  EENYRHSLSLXRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVXDEEARLGYTEVK 133
Query: 70  VLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFT 129
           +    F               SV+  R  G   A +LL TGR + A+EA   G V+ +  
Sbjct: 134 I---GFVAALV----------SVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAP 180
Query: 130 TEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERW--ESEEF 187
             +   +        AK  P S+   K+L+       L +  +     L   W  E+ + 
Sbjct: 181 PGKALEEAKALAEEVAKNAPTSLRLTKELLLALPGXGLEDGFR--LAALANAWVRETGDL 238
Query: 188 MNAITAFFNRK 198
              I AFF ++
Sbjct: 239 AEGIRAFFEKR 249

>pdb|3MOY|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycob Smegmatis Length = 263

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 26/131 (19%)
Query: 31  KPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCS 90
           KP++A V G A+G       LCD+V A+DT            A F  P    G+ P    
Sbjct: 101 KPIVAAVAGYALGGGCELAMLCDLVIAADT------------ARFGQPEITLGILPGLGG 148
Query: 91  SVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQ 150
           +    R  G + A +L  TGR L A+EA + G VS              RI   A L  +
Sbjct: 149 TQRLTRAVGKAKAMDLCLTGRSLTAEEAERVGLVS--------------RIVPAADLLDE 194
Query: 151 SMIFAKQLVRV 161
           ++  A+++ R+
Sbjct: 195 ALAVAQRIARM 205

>pdb|3T3W|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycobacterium Thermoresistibile Length = 279

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 14/139 (10%)
Query: 21  KYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFT 80
           +Y   + + PKP IA V G  I         CD++ A++ A L + PV ++         
Sbjct: 108 EYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDA-LFSDPVVLMD-------- 158
Query: 81  LRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPR 140
           + G+   G +  L PR      A E+L+TGR + A+E  Q G V+ V   + ++ +    
Sbjct: 159 IGGVEYHGHTWELGPR-----KAKEILFTGRAMTAEEVAQTGMVNRVVPRDRLDAETRAL 213
Query: 141 IHAWAKLPPQSMIFAKQLV 159
               AK+PP ++  AK+ V
Sbjct: 214 AGEIAKMPPFALRQAKRAV 232

>pdb|3SLL|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 290

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 31  KPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCS 90
           +P+IA +NG AIG        CD+  AS              A F       G+T     
Sbjct: 124 QPVIAAINGAAIGGGLCLALACDVRVASQ------------DAYFRAAGINNGLTASELG 171
Query: 91  -SVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEI 133
            S L PR  G S AS+++ TGR ++A EA + G VS    +E +
Sbjct: 172 LSYLLPRAIGTSRASDIMLTGRDVDADEAERIGLVSRKVASESL 215

>pdb|3QXZ|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 32  PLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSS 91
           P+IA VNG AIGI  T     DI             +   +  +  P    G+ P+  + 
Sbjct: 100 PVIAAVNGHAIGIGMTLALHADIR------------ILAEEGRYAIPQVRFGVAPDALAH 147
Query: 92  VLFPRIFGNSVASELLYTGRKLNAQEALQYGFVS 125
              PR+ G +VA+ELL TG   +AQ A++ G  +
Sbjct: 148 WTLPRLVGTAVAAELLLTGASFSAQRAVETGLAN 181

>pdb|4ELS|A Chain A, Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Coenzyme A Synthases (Menb) In Complex With Bicarbonate Length = 285

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 14/113 (12%)
Query: 30  PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
           PKP++A+V G +IG       +CD+  A+D AI            F       G    G 
Sbjct: 119 PKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAI------------FGQTGPKVGSFDGGW 166
Query: 90  SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDL--WPR 140
            +    RI G   A E+ +  R+ +A++AL  G V+ V    ++E++   W R
Sbjct: 167 GASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCR 219

>pdb|3T88|A Chain A, Crystal Structure Of Escherichia Coli Menb In Complex With Substrate Analogue, Osb-Ncoa Length = 289

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 14/113 (12%)
Query: 30  PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
           PKP++A+V G +IG       +CD+  A+D AI            F       G    G 
Sbjct: 123 PKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAI------------FGQTGPKVGSFDGGW 170
Query: 90  SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDL--WPR 140
            +    RI G   A E+ +  R+ +A++AL  G V+ V    ++E++   W R
Sbjct: 171 GASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCR 223

>pdb|4EML|A Chain A, Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoyl-Coenzyme A Synthase (Menb) In Complex With Bicarbonate Length = 275

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 47/107 (43%), Gaps = 12/107 (11%)
Query: 30  PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
           PK +IA+V G AIG       +CD+  A+D AI            F       G    G 
Sbjct: 109 PKVVIALVAGYAIGGGHVLHLVCDLTIAADNAI------------FGQTGPKVGSFDGGF 156
Query: 90  SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERD 136
            S    RI G   A E+ Y  R+ +AQEA + G V+ V   + +E +
Sbjct: 157 GSSYLARIVGQKKAREIWYLCRQYSAQEAERMGMVNTVVPVDRLEEE 203

>pdb|3PE8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 256

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 14/107 (13%)
Query: 28  DYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTP 86
           D  KP+I  +NG A+      LAL CDI+ AS+             A F       G+ P
Sbjct: 90  DMTKPVIGAINGAAV-TGGLELALYCDILIASE------------NAKFADTHARVGLMP 136
Query: 87  EGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEI 133
               SV  P+  G  +A  +  TG  L+AQ+AL+ G V+ V   +++
Sbjct: 137 TWGLSVRLPQKVGVGLARRMSLTGDYLSAQDALRAGLVTEVVAHDDL 183

>pdb|3RSI|A Chain A, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 265

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 50/114 (43%), Gaps = 15/114 (13%)
Query: 31  KPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCS 90
           KPLIA VNG  +G        C+++  +D  +   H      ATF  P   RG+ P   S
Sbjct: 103 KPLIAAVNGACLGGG------CEMLQQTDIRVSDEH------ATFGLPEVQRGLVPGAGS 150
Query: 91  SVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVF---TTEEIERDLWPRI 141
            V   R    + A E++ TG  L A EA  +G V  V    T  +  R L  RI
Sbjct: 151 MVRLKRQIPYTKAMEMILTGEPLTAFEAYHFGLVGHVVPAGTALDKARSLADRI 204

>pdb|3LKE|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Halodurans Length = 263

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
Query: 30  PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
           PK  +A++NG A G     +  CD              + + +A F   F   G++P+  
Sbjct: 101 PKVTVALINGYAYGGGFNMMLACD------------RRIALRRAKFLENFHKMGISPDLG 148
Query: 90  SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK 146
           +S   PRI G      LL  G+   ++EAL+ G +  +    E +++L  R+  + K
Sbjct: 149 ASYFLPRIIGYEQTMNLLLEGKLFTSEEALRLGLIQEIC---ENKQELQERVKNYLK 202

>pdb|2Q35|A Chain A, Crystal Structure Of The Y82f Variant Of Ech2 Decarboxylase Domain Of Curf From Lyngbya Majuscula Length = 243

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 12/150 (8%)
Query: 27  IDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTP 86
           +D   P+IA + G + G         D V            VF  ++ + T F   G TP
Sbjct: 87  LDCEIPIIAAMQGHSFGGGLLLGLYADFV------------VFSQESVYATNFMKYGFTP 134
Query: 87  EGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK 146
            G +S++     G+ +A E++YTG     +E  + G    V + +++           AK
Sbjct: 135 VGATSLILREKLGSELAQEMIYTGENYRGKELAERGIPFPVVSRQDVLNYAQQLGQKIAK 194
Query: 147 LPPQSMIFAKQLVRVPMLSMLHEANKRECK 176
            P  S++  KQ +   + +   EA K+E +
Sbjct: 195 SPRLSLVALKQHLSADIKAKFPEAIKKELE 224

>pdb|3H02|A Chain A, 2.15 Angstrom Resolution Crystal Structure Of Naphthoate Synthase From Salmonella Typhimurium. Length = 288

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 14/113 (12%)
Query: 30  PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
           PKP++A V G +IG        CD+  A++ AI            F       G    G 
Sbjct: 122 PKPVVAXVAGYSIGGGHVLHXXCDLTIAAENAI------------FGQTGPKVGSFDGGW 169
Query: 90  SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDL--WPR 140
            +    RI G   A E+ +  R+ +AQ+AL  G V+ V    ++E++   W R
Sbjct: 170 GASYXARIVGQKKAREIWFLCRQYDAQQALDXGLVNTVVPLADLEKETVRWCR 222

>pdb|3RRV|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 276

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 12/96 (12%)
Query: 32  PLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSS 91
           P++A VNGPA+G+  + +AL DIV+ ++ A L +            P    G+       
Sbjct: 124 PVVAAVNGPAVGLGCSLVALSDIVYIAENAYLAD------------PHVQVGLVAADGGP 171
Query: 92  VLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGV 127
           + +P      +A E   TG +++AQ A++ G  + V
Sbjct: 172 LTWPLHISLLLAKEYALTGTRISAQRAVELGLANHV 207

>pdb|4F47|A Chain A, The Structure Of Enoyl-Coa Hydratase Echa19 From Mycobacterium Marinum Length = 278

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 31  KPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCS 90
           KPLIA V GPAI      L   DI  A+++A             F        + P G S
Sbjct: 116 KPLIAAVEGPAIAGGTEILQGTDIRVAAESA------------KFGISEAKWSLYPMGGS 163
Query: 91  SVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVF 128
           +V   R    +VA +LL TGR + A EA + G V  V 
Sbjct: 164 AVRLVRQIPYTVACDLLLTGRHITAAEAKEMGLVGHVV 201

>pdb|3R9Q|A Chain A, Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 262

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 65/144 (45%), Gaps = 21/144 (14%)
Query: 31  KPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
           KP+IA ++G A+      LAL CD+    + A+L    VF  +  +  P    G      
Sbjct: 102 KPVIAAISGHAV-AGGIELALWCDLRVVEEDAVL---GVFCRR--WGVPLIDGG------ 149
Query: 90  SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFT---TEEIERDLWPRIHAWAK 146
            ++  PR+ G+S A +L+ TGR ++A EAL  G V+ V       E    L   I A+  
Sbjct: 150 -TIRLPRLIGHSRAMDLILTGRPVHANEALDIGLVNRVVARGQAREAAETLAAEIAAF-- 206
Query: 147 LPPQSMIFAKQLVRVPMLSMLHEA 170
             PQ  + A +   +    M  EA
Sbjct: 207 --PQQCVRADRDSAIAQWGMAEEA 228

>pdb|3R0O|A Chain A, Crystal Structure Of Carnitinyl-Coa Hydratase From Mycobacterium Avium Length = 273

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 14/107 (13%)
Query: 22  YVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTL 81
           YV  FID  KP IA VNG A+G  +      D+V A ++            A+F  P   
Sbjct: 101 YVHHFID--KPTIAAVNGTALGGGSELALASDLVIACES------------ASFGLPEVK 146
Query: 82  RGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVF 128
           RG+                 VA EL+ TG  + A +AL++G ++ V 
Sbjct: 147 RGLIAGAGGVFRIVEQLPRKVALELVLTGEPMTASDALRWGLINEVV 193

>pdb|2Q2X|A Chain A, Crystal Structure Of The Ech2 Decarboxylase Domain Of Curf From Lyngbya Majuscula Length = 243

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 60/148 (40%), Gaps = 12/148 (8%)
Query: 27  IDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTP 86
           +D   P+IA   G + G         D V            VF  ++ + T F   G TP
Sbjct: 87  LDCEIPIIAAXQGHSFGGGLLLGLYADFV------------VFSQESVYATNFXKYGFTP 134
Query: 87  EGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK 146
            G +S++     G+ +A E +YTG     +E  + G    V + +++           AK
Sbjct: 135 VGATSLILREKLGSELAQEXIYTGENYRGKELAERGIPFPVVSRQDVLNYAQQLGQKIAK 194
Query: 147 LPPQSMIFAKQLVRVPMLSMLHEANKRE 174
            P  S++  KQ +   + +   EA K+E
Sbjct: 195 SPRLSLVALKQHLSADIKAKFPEAIKKE 222

>pdb|3HE2|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 264

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 78/190 (41%), Gaps = 31/190 (16%)
Query: 14  DTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDI-VFASDTAILLNHPVFVLQ 72
           D  I L K + A    P P++  +NGPAIG        CD+ V A D             
Sbjct: 94  DRLIELHKAMDA---SPMPVVGAINGPAIGAGLQLAMQCDLRVVAPD------------- 137
Query: 73  ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 132
           A F  P +  G+  +  S      + G+  A  +L +  KL A+ AL  G  + + T  +
Sbjct: 138 AFFQFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGTLAD 197
Query: 133 IERDLWPRIHAW----AKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFM 188
            +        AW    A+L P ++  AK+++       + EA     +  ++ W S++ +
Sbjct: 198 AQ--------AWAAEIARLAPLAIQHAKRVLNDD--GAIEEAWPAHKELFDKAWGSQDVI 247
Query: 189 NAITAFFNRK 198
            A  A   ++
Sbjct: 248 EAQVARMEKR 257

>pdb|3QK8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From Mycobacterium Marinum In Complex With An Unknown Ligand Length = 272

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 20  QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPF 79
           +  V   ++  KP+++ + GPA+G       L DI  AS TA +++          HT  
Sbjct: 97  RDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDG---------HTKL 147
Query: 80  TLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEI 133
              G+     +++ +P + G + A   L T   L+ +EA + G VS     +E+
Sbjct: 148 ---GVAAGDHAAICWPLLVGMAKAKYYLLTCETLSGEEAERIGLVSTCVDDDEV 198

>pdb|2J5G|D Chain D, The Native Structure Of A Beta-Diketone Hydrolase From The Cyanobacterium Anabaena Sp. Pcc 7120 Length = 263

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 12/137 (8%)
Query: 20  QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPF 79
           +K +   +D   P+I+ VNG A+ + +  +   DI+ AS+  +  + P   L A      
Sbjct: 107 KKVLQNLLDIEVPVISAVNGAAL-LHSEYILTTDIILASENTVFQDMPH--LNA------ 157
Query: 80  TLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWP 139
              G+ P     +L+P   G       L+T  KL AQ+A +   V  V    ++    W 
Sbjct: 158 ---GIVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNVVHEVLPQSKLMERAWE 214
Query: 140 RIHAWAKLPPQSMIFAK 156
                AK P  ++ + +
Sbjct: 215 IARTLAKQPTLNLRYTR 231

>pdb|2J5G|A Chain A, The Native Structure Of A Beta-Diketone Hydrolase From The Cyanobacterium Anabaena Sp. Pcc 7120 Length = 263

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 12/137 (8%)
Query: 20  QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPF 79
           +K +   +D   P+I+ VNG A+ + +  +   DI+ AS+  +  + P   L A      
Sbjct: 107 KKVLQNLLDIEVPVISAVNGAAL-LHSEYILTTDIILASENTVFQDMPH--LNA------ 157
Query: 80  TLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWP 139
              G+ P     +L+P   G       L+T  KL AQ+A +   V  V    ++    W 
Sbjct: 158 ---GIVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNVVHEVLPQSKLMERAWE 214
Query: 140 RIHAWAKLPPQSMIFAK 156
                AK P  ++ + +
Sbjct: 215 IARTLAKQPTLNLRYTR 231

>pdb|3R9S|A Chain A, Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Avium 104 Length = 267

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 47/113 (41%), Gaps = 16/113 (14%)
Query: 22  YVAAFIDYPKPLIAIVNGPAIGISATTLALC-DIVFASDTAILLNHPVFVLQATFHTPFT 80
           YV  FID  KP IA VNG A+G   T LAL  D+V A +            +A F  P  
Sbjct: 95  YVRHFID--KPTIAAVNGTALG-GGTELALASDLVVADE------------RAQFGLPEV 139
Query: 81  LRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEI 133
            RG+                 VA  LL TG  L+A  A  +G ++ V     +
Sbjct: 140 KRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGLINEVVEAGSV 192

>pdb|3R9T|A Chain A, Structure Of Echa1_1 From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 267

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 47/113 (41%), Gaps = 16/113 (14%)
Query: 22  YVAAFIDYPKPLIAIVNGPAIGISATTLALC-DIVFASDTAILLNHPVFVLQATFHTPFT 80
           YV  FID  KP IA VNG A+G   T LAL  D+V A +            +A F  P  
Sbjct: 95  YVRHFID--KPTIAAVNGTALG-GGTELALASDLVVADE------------RAQFGLPEV 139
Query: 81  LRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEI 133
            RG+                 VA  LL TG  L+A  A  +G ++ V     +
Sbjct: 140 KRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGLINEVVEAGSV 192

>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) Complexed With 2trans-hexenoyl-coa Length = 742

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 16  SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATF 75
            + L   V     Y KP++A + G A+G        C    A+             +A  
Sbjct: 92  GLALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIAN------------AKARV 139
Query: 76  HTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE 134
             P    G+ P    + L PR+ G  VA +L+ +G+ L+A EAL+ G +  V  ++ +E
Sbjct: 140 GLPAVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSDPVE 198

>pdb|3TRR|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 256

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 14/103 (13%)
Query: 25  AFIDYP--KPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLR 82
            F + P  KP+IA V G A+      +  CD+V A  +A             F  P   R
Sbjct: 86  GFTNVPPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSA------------KFGIPEVKR 133
Query: 83  GMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVS 125
           G+       +  P      VA EL  TG    A++A +YGF++
Sbjct: 134 GLVAGAGGLLRLPNRIPYQVAMELALTGESFTAEDAAKYGFIN 176

>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) In Apo Form Length = 742

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 16  SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATF 75
            + L   V     Y KP++A + G A+G        C    A+             +A  
Sbjct: 92  GLALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIAN------------AKARV 139
Query: 76  HTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE 134
             P    G+ P    + L PR+ G  VA +L+ +G+ L+A EAL+ G +  V  ++ +E
Sbjct: 140 GLPEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSDPVE 198

>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa Length = 727

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 16  SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATF 75
            + L   V     Y KP++A + G A+G        C    A+             +A  
Sbjct: 77  GLALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIAN------------AKARV 124
Query: 76  HTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE 134
             P    G+ P    + L PR+ G  VA +L+ +G+ L+A EAL+ G +  V  ++ +E
Sbjct: 125 GLPEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSDPVE 183

>pdb|3QYR|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 14/104 (13%)
Query: 31  KPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
           KP+I  +NG A+      LAL CDI+ AS+             A F       G+ P   
Sbjct: 92  KPVIGAINGAAV-TGGLELALYCDILIASE------------NARFADTHARVGLLPTWG 138
Query: 90  SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEI 133
            SV  P+  G  +A  +  TG  L+A +AL+ G V+ V   +++
Sbjct: 139 LSVRLPQKVGIGLARRMSLTGDYLSAADALRAGLVTEVVPHDQL 182

>pdb|3P85|A Chain A, Crystal Structure Enoyl-Coa Hydratase From Mycobacterium Avium Length = 270

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 14/104 (13%)
Query: 31  KPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
           KP+I  +NG A+      LAL CDI+ AS+             A F       G+ P   
Sbjct: 109 KPVIGAINGAAV-TGGLELALYCDILIASE------------NARFADTHARVGLLPTWG 155
Query: 90  SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEI 133
            SV  P+  G  +A  +  TG  L+A +AL+ G V+ V   +++
Sbjct: 156 LSVRLPQKVGIGLARRMSLTGDYLSAADALRAGLVTEVVPHDQL 199

>pdb|2PPY|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From Geobacillus Kaustophilus Hta426 Length = 265

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 68/173 (39%), Gaps = 19/173 (10%)
Query: 30  PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
           P+  IA + G  +G        CD+ F  D A  +  P   L     T  T R       
Sbjct: 101 PQVYIACLEGHTVGGGLEXALACDLRFXGDEAGKIGLPEVSLGVLAGTGGTQR------- 153
Query: 90  SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP 149
                 R+ G S A +   TG  +  QEAL+ G V+ VF   E       R   +A+   
Sbjct: 154 ----LARLIGYSRALDXNITGETITPQEALEIGLVNRVFPQAETRE----RTREYARKLA 205
Query: 150 QSMIFAKQLVRVPMLSM----LHEANKRECKRLEERWESEEFMNAITAFFNRK 198
            S  +A   +++ + +     L+ A + E +     + SE+    ++AF  ++
Sbjct: 206 NSATYAVSNIKLAIXNGKEXPLNVAIRYEGELQNLLFRSEDAKEGLSAFLEKR 258

>pdb|2A7K|A Chain A, Carboxymethylproline Synthase (carb) From Pectobacterium Carotovora, Apo Enzyme Length = 250

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 17/147 (11%)
Query: 25  AFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGM 84
           A ++  KP IA V+G AIG+                A++ +  +    A F  P    G+
Sbjct: 89  AVLNVNKPTIAAVDGYAIGM------------GFQFALMFDQRLMASTANFVMPELKHGI 136
Query: 85  TPEGCS--SVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIH 142
              GCS  + +     G S   E++Y  + L+A   + Y  V+ V  +  +      + H
Sbjct: 137 ---GCSVGAAILGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAH 193
Query: 143 AWAKLPPQSMIFAKQLVRVPMLSMLHE 169
             A  P  + I  K+ V  P + +L +
Sbjct: 194 VMASYPASAFINTKRAVNKPFIHLLEQ 220

>pdb|1Q51|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Menb In Complex With Acetoacetyl-Coenzyme A, A Key Enzyme In Vitamin K2 Biosynthesis Length = 314

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 41/105 (39%), Gaps = 11/105 (10%)
Query: 30  PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
           PK +I +VNG A G   +   +CD+  AS              A F       G    G 
Sbjct: 147 PKVVICLVNGWAAGGGHSLHVVCDLTLASRE-----------YARFKQTDADVGSFDGGY 195
Query: 90  SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE 134
            S    R  G   A E+ + GR   A++  Q G V+ V    E+E
Sbjct: 196 GSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELE 240

>pdb|1RJM|A Chain A, Crystal Structure Of Menb (rv0548c) From Mycobacterium Tuberculosis Length = 339

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 41/105 (39%), Gaps = 11/105 (10%)
Query: 30  PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
           PK +I +VNG A G   +   +CD+  AS              A F       G    G 
Sbjct: 172 PKVVICLVNGWAAGGGHSLHVVCDLTLASRE-----------YARFKQTDADVGSFDGGY 220
Query: 90  SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE 134
            S    R  G   A E+ + GR   A++  Q G V+ V    E+E
Sbjct: 221 GSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELE 265

>pdb|3T8A|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Menb In Complex With Substrate Analogue, Osb-Ncoa Length = 334

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 41/105 (39%), Gaps = 11/105 (10%)
Query: 30  PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
           PK +I +VNG A G   +   +CD+  AS              A F       G    G 
Sbjct: 167 PKVVICLVNGWAAGGGHSLHVVCDLTLASRE-----------YARFKQTDADVGSFDGGY 215
Query: 90  SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE 134
            S    R  G   A E+ + GR   A++  Q G V+ V    E+E
Sbjct: 216 GSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELE 260

>pdb|3TLF|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 274

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 65/158 (41%), Gaps = 25/158 (15%)
Query: 20  QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPF 79
           Q+    F    KP++  VNG   G     +   DIV AS+            QATF  P 
Sbjct: 100 QEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASE------------QATFFDPH 147
Query: 80  TLRGMTPEGCSSVLFPRIFGNSVASELLYTGR--KLNAQEALQYGFVSGVFTTEEIERD- 136
              G+   G   V   R+   S+A  +   G+  +++AQ A + G +S     E +E D 
Sbjct: 148 VSIGLVA-GRELVRVSRVLPRSIALRMALMGKHERMSAQRAYELGLIS-----EIVEHDR 201
Query: 137 LWPRIHAWAKLPPQSMIFAKQLVRVPMLSM----LHEA 170
           L  R H  A +   +   A +  R+ +L      LHEA
Sbjct: 202 LLERAHEIADIVNSNAPLAVRGTRLAILKGLNVPLHEA 239

>pdb|4FZW|C Chain C, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 274

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 20/191 (10%)
Query: 14  DTSITLQKY----VAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVF 69
           D  ++++++    V      PKP+I  VNG A G  AT     DIV A+ +         
Sbjct: 91  DLGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARS--------- 141
Query: 70  VLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFT 129
              A F   F+  G+ P+   + L PR+ G + A  L   G +L+A++A ++G +  V  
Sbjct: 142 ---AKFVMAFSKLGLIPDCGGTWLLPRVAGRARAMGLALLGNQLSAEQAHEWGMIWQVVD 198
Query: 130 TEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEA--NKRECKRLEERWESEEF 187
            E +           A  P   +   KQ +     + L      +R+ +RL  R  S ++
Sbjct: 199 DETLADTAQQLARHLATQPTFGLGLIKQAINSAETNTLDTQLDLERDYQRLAGR--SADY 256
Query: 188 MNAITAFFNRK 198
              ++AF  ++
Sbjct: 257 REGVSAFLAKR 267

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	198
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	5e-62
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	1e-58
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	1e-51
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	2e-51
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	1e-36
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	2e-36
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	2e-36
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	2e-31
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	1e-30
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	9e-30
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	8e-29
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 11251J, struct	1e-28
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	1e-28
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	1e-28
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	1e-27
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	2e-27
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	4e-27
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	5e-27
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	4e-26
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	7e-26
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	2e-25
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	3e-25
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	4e-25
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	4e-24
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	6e-24
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	7e-24
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	1e-23
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	2e-22
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	1e-21
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	1e-21
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	2e-21
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	3e-21
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	2e-20
3t3w_A	279	Probable enoyl-COA hydratase; ssgcid, structural g	2e-20
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	4e-20
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	5e-20
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	6e-20
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	7e-20
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	2e-19
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	2e-19
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	6e-19
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	7e-19
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	9e-19
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	2e-18
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	3e-18
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	5e-18
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	5e-18
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	9e-18
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	1e-17
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	2e-17
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	2e-16
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	4e-16
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	5e-16
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	8e-16
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	8e-16
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	9e-16
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	9e-16
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	1e-15
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	2e-15
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	3e-15
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	3e-15
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	6e-15
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	8e-15
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	2e-14
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	2e-14
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	6e-14
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	1e-13
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	2e-12
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	2e-06
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	4e-06
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	3e-05

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280

 Score =  193 bits (492), Expect = 5e-62
 Identities = 83/198 (41%), Positives = 119/198 (60%), Gaps = 12/198 (6%)

Query: 1   MTNNPTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDT 60
               P  +  +  + ++ L+++V  FID+PKPLIA+VNGPA+GIS T L L D V+ASD 
Sbjct: 92  TDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDR 151

Query: 61  AILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQ 120
           A            TFHTPF+  G +PEGCSS  FP+I   + A+E+L  G+KL A EA  
Sbjct: 152 A------------TFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACA 199

Query: 121 YGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEE 180
            G V+ VF     ++++W R+ A+AKLPP ++  +K+++R      LH  N  EC  L+ 
Sbjct: 200 QGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALRISKEVIRKREREKLHAVNAEECNVLQG 259

Query: 181 RWESEEFMNAITAFFNRK 198
           RW S+E  NA+  F +RK
Sbjct: 260 RWLSDECTNAVVNFLSRK 277

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Length = 280

 Score =  184 bits (469), Expect = 1e-58
 Identities = 45/185 (24%), Positives = 73/185 (39%), Gaps = 17/185 (9%)

Query: 20  QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPF 79
                AFI + K LI  +NGPAIG+SA  +ALCDIV++ +                  PF
Sbjct: 102 VYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDK-----------VYLLYPF 150

Query: 80  TLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVF-----TTEEIE 134
              G+  EG ++V  P  FG +   E L   +        + GF+S  F       E   
Sbjct: 151 ANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFN 210

Query: 135 RDLWPRIHAW-AKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITA 193
             +   +      L   S +  K+L++   +   ++AN  E     + W   E +     
Sbjct: 211 AKVLEELREKVKGLYLPSCLGMKKLLKSNHIDAFNKANSVEVNESLKYWVDGEPLKRFRQ 270

Query: 194 FFNRK 198
             +++
Sbjct: 271 LGSKQ 275

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261

 Score =  165 bits (421), Expect = 1e-51
 Identities = 75/198 (37%), Positives = 113/198 (57%), Gaps = 12/198 (6%)

Query: 1   MTNNPTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDT 60
           +     D   E T  +  ++ +V  FI + KP+I  VNGPAIG+ A+ L LCD+V+A++ 
Sbjct: 72  IRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEK 131

Query: 61  AILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQ 120
           A             F TP+T  G +P+GCS+V+FP+I G + A+E+L +GRKL AQEA  
Sbjct: 132 A------------WFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACG 179

Query: 121 YGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEE 180
            G VS VF      +++  RI   A   P  +  +K LVR  M   L +AN+REC+ L++
Sbjct: 180 KGLVSQVFWPGTFTQEVMVRIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLKK 239

Query: 181 RWESEEFMNAITAFFNRK 198
            W S + M+++  +  RK
Sbjct: 240 IWGSAQGMDSMLKYLQRK 257

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291

 Score =  166 bits (423), Expect = 2e-51
 Identities = 68/206 (33%), Positives = 109/206 (52%), Gaps = 20/206 (9%)

Query: 1   MTNNPTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDT 60
           + +   +      +   T++ +V  FI + KP++  VNGPAIG+ A+ L LCD+V+A++ 
Sbjct: 90  VKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEK 149

Query: 61  AILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQ 120
           A             F TP+T  G +P+GCSS+ FP++ G + A+E+L  GRKL A+EA  
Sbjct: 150 A------------WFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACA 197

Query: 121 YGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEE 180
            G VS VF T    +++  +I   A   P  +   K LVR  +   L +AN+REC+ L +
Sbjct: 198 KGLVSQVFLTGTFTQEVMIQIKELASYNPIVLEECKALVRCNIKLELEQANERECEVLRK 257

Query: 181 RWESEEFMNAI--------TAFFNRK 198
            W S + + ++         A F  +
Sbjct: 258 IWSSAQGIESMLKIPLLGYKAAFPPR 283

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256

 Score =  127 bits (321), Expect = 1e-36
 Identities = 54/185 (29%), Positives = 83/185 (44%), Gaps = 23/185 (12%)

Query: 20  QKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTP 78
           +  + A   +PKPLI  VNG  +GI AT +    D+ F S TA                P
Sbjct: 89  RGLIKALAGFPKPLICAVNGLGVGIGAT-ILGYADLAFMSSTA------------RLKCP 135

Query: 79  FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLW 138
           FT  G+ PE  SS L P++ G   A+ LL +   ++A+EAL+ G V  + + EE    L 
Sbjct: 136 FTSLGVAPEAASSYLLPQLVGRQNAAWLLMSSEWIDAEEALRMGLVWRICSPEE----LL 191

Query: 139 PRIHAWAK----LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAF 194
           P     A+     P  S++  K  +  P  + +  A+ RE     E   ++    A+  F
Sbjct: 192 PEARRHAEILAAKPISSLMAVKHTMVEPNRAQIAAASARENAHFAELMGAQANAAALADF 251

Query: 195 FN-RK 198
            + R+
Sbjct: 252 TDRRR 256

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298

 Score =  127 bits (322), Expect = 2e-36
 Identities = 55/184 (29%), Positives = 78/184 (42%), Gaps = 23/184 (12%)

Query: 20  QKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTP 78
           ++         KP+IA +NGP +GI  T  AL CD+ FA+  A             F   
Sbjct: 120 ERPPHFVTMLRKPVIAAINGPCVGIGLT-QALMCDVRFAAAGA------------KFAAV 166

Query: 79  FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLW 138
           F  RG+  E   S + PR+   +VA +LL +GR   A+EA Q G V  V T E+    L 
Sbjct: 167 FARRGLIAEFGISWILPRLTSWAVALDLLLSGRTFLAEEAAQLGLVKEVVTPEQ----LM 222

Query: 139 PRIHAWAK-----LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITA 193
           PR   +A+       P SM   K+ V       + EA       L E     + +  I +
Sbjct: 223 PRALEYAEDIARYCSPSSMAVIKRQVYGDATRDVVEATSHAEVLLREAMPRPDVIEGIVS 282

Query: 194 FFNR 197
           F  +
Sbjct: 283 FLEK 286

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Length = 266

 Score =  126 bits (320), Expect = 2e-36
 Identities = 57/184 (30%), Positives = 86/184 (46%), Gaps = 25/184 (13%)

Query: 20  QKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTP 78
              + +     KPLI  V G AIGI   T+ L  D+VFA +TA             F  P
Sbjct: 89  FVLLKSAARLSKPLIIAVKGVAIGI-GVTILLQADLVFADNTA------------LFQIP 135

Query: 79  FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLW 138
           F   G++PEG +S L  +  G   A+ELL+T +K NA+ ALQ G V+ +        D +
Sbjct: 136 FVSLGLSPEGGASQLLVKQAGYHKAAELLFTAKKFNAETALQAGLVNEIVE------DAY 189

Query: 139 PRIHAWAK----LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAF 194
               A A+    LP  S+   K L++  +   + E    E +   +R +S E + A+ AF
Sbjct: 190 ATAQATAQHLTALPLASLKQTKALMKHDL-DQIIECIDHEAEIFMQRVQSPEMLEAVQAF 248

Query: 195 FNRK 198
             ++
Sbjct: 249 MQKR 252

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265

 Score =  113 bits (286), Expect = 2e-31
 Identities = 45/196 (22%), Positives = 74/196 (37%), Gaps = 25/196 (12%)

Query: 10  NEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPV 68
               +   +      A  +   P+IA VNG AIGI  T LAL  DI   ++         
Sbjct: 78  AAPRNPDFSASPVQPAAFELRTPVIAAVNGHAIGIGMT-LALHADIRILAEEG------- 129

Query: 69  FVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVF 128
                 +  P    G+ P+  +    PR+ G +VA+ELL TG   +AQ A++ G  +   
Sbjct: 130 -----RYAIPQVRFGVAPDALAHWTLPRLVGTAVAAELLLTGASFSAQRAVETGLANRCL 184

Query: 129 TTEEIERDLWPRIHAWA-----KLPPQSMIFAKQLVRVPMLSMLH--EANKRECKRLEER 181
              +    +       A      + P+S    K+L+    ++ +   E   RE       
Sbjct: 185 PAGK----VLGAALRMAHDIATNVAPESAALTKRLLWDAQMTGMSAAEVAARETADHLRL 240

Query: 182 WESEEFMNAITAFFNR 197
             S++      AF + 
Sbjct: 241 MGSQDAAEGPRAFIDG 256

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255

 Score =  111 bits (280), Expect = 1e-30
 Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 14/180 (7%)

Query: 19  LQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHT 77
             + V A    PKP+IA V+G A+G   + LAL CD+V A+  +             F  
Sbjct: 81  ANRVVRAITSLPKPVIAGVHGAAVGFGCS-LALACDLVVAAPAS------------YFQL 127

Query: 78  PFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDL 137
            FT  G+ P+G +S L P + G +  S +  T  K++A  A ++G +S + + +E E  L
Sbjct: 128 AFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGMISHITSADEYESVL 187

Query: 138 WPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNR 197
              + + +  P  +  + K+ +    L+ L      E +      E+ +F     AF  R
Sbjct: 188 TDVLRSVSGGPTLAFGWTKRALAAATLAELEPVQAIEAEGQLALVETADFREGARAFRER 247

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279

 Score =  107 bits (269), Expect = 8e-29
 Identities = 41/177 (23%), Positives = 65/177 (36%), Gaps = 15/177 (8%)

Query: 23  VAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTL 81
           V A  + P P+IA ++G A G  A  LAL  D   A  +              F   FT 
Sbjct: 106 VRAVRECPFPVIAALHGVAAGAGAV-LALAADFRVADPST------------RFAFLFTR 152

Query: 82  RGMTPEGC-SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPR 140
            G++     ++ L PR+ G   A+ LL  G  + A EA + G +S +      +      
Sbjct: 153 VGLSGGDMGAAYLLPRVVGLGHATRLLMLGDTVRAPEAERIGLISELTEEGRADEAARTL 212

Query: 141 IHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNR 197
               A  P  +    K L+   +   L  A + +          E++     AF  +
Sbjct: 213 ARRLADGPALAHAQTKALLTAELDMPLAAAVELDASTQALLMTGEDYAEFHAAFTEK 269

>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Length = 263

 Score =  106 bits (268), Expect = 1e-28
 Identities = 40/186 (21%), Positives = 71/186 (38%), Gaps = 22/186 (11%)

Query: 19  LQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHT 77
           L   V      PK  +A++NG A G     + L CD   A   A             F  
Sbjct: 90  LNHCVLEIFTSPKVTVALINGYAYGGGFN-MMLACDRRIALRRA------------KFLE 136

Query: 78  PFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDL 137
            F   G++P+  +S   PRI G      LL  G+   ++EAL+ G +  +   ++   +L
Sbjct: 137 NFHKMGISPDLGASYFLPRIIGYEQTMNLLLEGKLFTSEEALRLGLIQEICENKQ---EL 193

Query: 138 WPRIHAWAK----LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITA 193
             R+  + K        ++   K+L++      L +  ++E + L   ++  E    + A
Sbjct: 194 QERVKNYLKAVSEGYVPAIAATKKLLKGKAAEELKQQLEQETEELVALFKQTEIKKRLEA 253

Query: 194 FFN-RK 198
                 
Sbjct: 254 LVEGHH 259

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272

 Score =  106 bits (268), Expect = 1e-28
 Identities = 34/183 (18%), Positives = 66/183 (36%), Gaps = 23/183 (12%)

Query: 20  QKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTP 78
           +  V   ++  KP+++ + GPA+G     +AL  DI  AS TA                 
Sbjct: 97  RDLVLNLVNLDKPVVSAIRGPAVGAGLV-VALLADISVASATA------------KIIDG 143

Query: 79  FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLW 138
            T  G+     +++ +P + G + A   L T   L+ +EA + G VS     +E    + 
Sbjct: 144 HTKLGVAAGDHAAICWPLLVGMAKAKYYLLTCETLSGEEAERIGLVSTCVDDDE----VL 199

Query: 139 PRIHAWAK----LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAF 194
           P     A+        ++ + K+ +      M     +         +   +    + A 
Sbjct: 200 PTATRLAENLAQGAQNAIRWTKRSLNH-WYRMFGPTFETSLGLEFLGFTGPDVQEGLAAH 258

Query: 195 FNR 197
             +
Sbjct: 259 RQK 261

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243

 Score =  105 bits (265), Expect = 1e-28
 Identities = 39/190 (20%), Positives = 71/190 (37%), Gaps = 22/190 (11%)

Query: 11  EDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVF 69
             T   + +       +D   P+IA + G + G     L L  D V  S  +        
Sbjct: 71  RKTRGEVEVLDLSGLILDCEIPIIAAMQGHSFGGGLL-LGLYADFVVFSQES-------- 121

Query: 70  VLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFT 129
                + T F   G TP G +S++     G+ +A E++YTG     +E  + G    V +
Sbjct: 122 ----VYATNFMKYGFTPVGATSLILREKLGSELAQEMIYTGENYRGKELAERGIPFPVVS 177

Query: 130 TEEIERDLWPRIHAWAK----LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESE 185
            ++    +        +     P  S++  KQ +   + +   EA K+E +  +  +   
Sbjct: 178 RQD----VLNYAQQLGQKIAKSPRLSLVALKQHLSADIKAKFPEAIKKELEIHQVTFNQP 233

Query: 186 EFMNAITAFF 195
           E  + I   F
Sbjct: 234 EIASRIQQEF 243

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257

 Score =  103 bits (260), Expect = 1e-27
 Identities = 46/196 (23%), Positives = 78/196 (39%), Gaps = 26/196 (13%)

Query: 11  EDTDTSITLQKY----VAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLN 65
           E+ D    L+      + A     KP++A VNG A G   + LAL CD    S+ A    
Sbjct: 71  EEMDHGDVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMS-LALACDFRLLSEKA---- 125

Query: 66  HPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVS 125
                   +F   F   G+ P+       PR+ G + A EL   G K+ A+EA   G  +
Sbjct: 126 --------SFAPAFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVTAEEAAALGLAT 177

Query: 126 GVFTTEEIERDLWPRIHAWAK----LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEER 181
            V    +        +  +A+    +P +++   K+L+R    +      +RE +     
Sbjct: 178 KVIPLSD----WEEEVKQFAERLSAMPTKAIGLIKRLLRESEETTFDRYLEREAECQRIA 233

Query: 182 WESEEFMNAITAFFNR 197
             + +    + AFF +
Sbjct: 234 GLTSDHREGVKAFFEK 249

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333

 Score =  104 bits (262), Expect = 2e-27
 Identities = 29/180 (16%), Positives = 59/180 (32%), Gaps = 26/180 (14%)

Query: 20  QKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTP 78
            +  A+ +   KP +  ++G  +    T +AL  D V A+  A                P
Sbjct: 147 VRGFASLMHCDKPTVVKIHGYCVAG-GTDIALHADQVIAAADA------------KIGYP 193

Query: 79  FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLW 138
                  P   ++ L+    G+  A  LL+TG  +   +A ++G         +++    
Sbjct: 194 PMRVWGVP---AAGLWAHRLGDQRAKRLLFTGDCITGAQAAEWGLAVEAPDPADLD---- 246

Query: 139 PRIHAWA----KLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEER-WESEEFMNAITA 193
            R          +P   +I AK      +L+     ++      +     + E    +  
Sbjct: 247 ARTERLVERIAAMPVNQLIMAKLACNTALLNQGVATSQMVSTVFDGIARHTPEGHAFVAT 306

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269

 Score =  102 bits (257), Expect = 4e-27
 Identities = 40/182 (21%), Positives = 70/182 (38%), Gaps = 23/182 (12%)

Query: 23  VAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTL 81
           +   I   +P++A +NG A G     ++L  D+   +D+A             F   +  
Sbjct: 93  IHKIIRVKRPVLAAINGVAAGGGLG-ISLASDMAICADSA------------KFVCAWHT 139

Query: 82  RGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRI 141
            G+  +  +S    RI G   A EL+ T R L  +EA  +G VS V+  +E         
Sbjct: 140 IGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKDE----FREVA 195

Query: 142 HAWAK----LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN- 196
              A+     P    + AK+      +  + E  + E + +        FM  +T F + 
Sbjct: 196 WKVARELAAAPTHLQVMAKERFHAGWMQPVEECTEFEIQNVIASVTHPHFMPCLTRFLDG 255

Query: 197 RK 198
            +
Sbjct: 256 HR 257

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263

 Score =  102 bits (256), Expect = 5e-27
 Identities = 36/156 (23%), Positives = 61/156 (39%), Gaps = 22/156 (14%)

Query: 20  QKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTP 78
           +K +   +D   P+I+ VNG A+    +   L  DI+ AS+        VF        P
Sbjct: 107 KKVLQNLLDIEVPVISAVNGAALL--HSEYILTTDIILASENT------VFQDM-----P 153

Query: 79  FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLW 138
               G+ P     +L+P   G       L+T  KL AQ+A +   V  V    +    L 
Sbjct: 154 HLNAGIVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNVVHEVLPQSK----LM 209

Query: 139 PRIHAWA----KLPPQSMIFAKQLVRVPMLSMLHEA 170
            R    A    K P  ++ + +  +   +  +++E 
Sbjct: 210 ERAWEIARTLAKQPTLNLRYTRVALTQRLKRLVNEG 245

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257

 Score =  100 bits (250), Expect = 4e-26
 Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 22/156 (14%)

Query: 20  QKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTP 78
           Q+ +   +    P+IA VNGP     A  + +  DIV A+++A                P
Sbjct: 98  QRLLNNLLSIEVPVIAAVNGPVTN--APEIPVMSDIVLAAESATFQ-----------DGP 144

Query: 79  FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLW 138
               G+ P   + V++P + G++     L TG++L+A+ AL YG V+ V + +E    L 
Sbjct: 145 HFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSEQE----LL 200

Query: 139 PRIHAWAK----LPPQSMIFAKQLVRVPMLSMLHEA 170
           PR    A+     P  +  +A++++   +  ++   
Sbjct: 201 PRAWELARGIAEKPLLARRYARKVLTRQLRRVMEAD 236

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290

 Score =   99 bits (250), Expect = 7e-26
 Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 27/188 (14%)

Query: 19  LQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHT 77
           L + +       +P+IA +NG AIG     LAL CD+  AS  A             F  
Sbjct: 112 LDEVILTLRRMHQPVIAAINGAAIGGGLC-LALACDVRVASQDA------------YFRA 158

Query: 78  PFTLRGMTP-EGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERD 136
                G+T  E   S L PR  G S AS+++ TGR ++A EA + G VS    +E     
Sbjct: 159 AGINNGLTASELGLSYLLPRAIGTSRASDIMLTGRDVDADEAERIGLVSRKVASES---- 214

Query: 137 LWPRIHAWAK----LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERW---ESEEFMN 189
           L    +A  +         +   K+ +   + +   E++  + + L + +    ++ F  
Sbjct: 215 LLEECYAIGERIAGFSRPGIELTKRTIWSGLDAASLESHMHQ-EGLGQLYVRLLTDNFEE 273

Query: 190 AITAFFNR 197
           A  A   +
Sbjct: 274 ATAARKEK 281

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} Length = 267

 Score = 98.0 bits (245), Expect = 2e-25
 Identities = 36/198 (18%), Positives = 69/198 (34%), Gaps = 23/198 (11%)

Query: 4   NPTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAIL 63
           +P+   +   + +  +   + A ++   P+IA ++G         +  CDI  A   +  
Sbjct: 82  SPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRS-- 139

Query: 64  LNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGF 123
                     +F       G+ P   S  L P++     A+    TG K +A+ A + G 
Sbjct: 140 ----------SFALTEARIGVAPAIISLTLLPKL-SARAAARYYLTGEKFDARRAEEIGL 188

Query: 124 VSGVFTTEEIERDLWPRIHAWAKL----PPQSMIFAKQLVRVPMLSMLHEANKRECKRLE 179
           ++          DL   I           PQ +  +K L    +L       +R  +   
Sbjct: 189 IT------MAAEDLDAAIDQLVTDVGRGSPQGLAASKALTTAAVLERFDRDAERLAEESA 242

Query: 180 ERWESEEFMNAITAFFNR 197
             + S+E    + AF  +
Sbjct: 243 RLFVSDEAREGMLAFLEK 260

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Length = 276

 Score = 98.0 bits (245), Expect = 3e-25
 Identities = 37/183 (20%), Positives = 74/183 (40%), Gaps = 24/183 (13%)

Query: 20  QKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTP 78
           ++ V        P++A VNGPA+G+  + L    DIV+ ++ A                P
Sbjct: 112 REIVLGMARCRIPVVAAVNGPAVGLGCS-LVALSDIVYIAENA------------YLADP 158

Query: 79  FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLW 138
               G+       + +P      +A E   TG +++AQ A++ G  + V        D  
Sbjct: 159 HVQVGLVAADGGPLTWPLHISLLLAKEYALTGTRISAQRAVELGLANHVA------DDPV 212

Query: 139 PRIHAWAK----LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAF 194
               A AK    LP Q++   K+++ + +   +  +         + + +E+F + +T  
Sbjct: 213 AEAIACAKKILELPQQAVESTKRVLNIHLERAVLASLDYALSAESQSFVTEDFRSIVTKL 272

Query: 195 FNR 197
            ++
Sbjct: 273 ADK 275

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264

 Score = 97.6 bits (244), Expect = 4e-25
 Identities = 31/183 (16%), Positives = 62/183 (33%), Gaps = 23/183 (12%)

Query: 20  QKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTP 78
           +  V   +++P+P++A V   A+G     LAL  DI                        
Sbjct: 94  RDLVLGPLNFPRPVVAAVEKVAVGAGLA-LALAADIAVVGKGT------------RLLDG 140

Query: 79  FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLW 138
               G+     + +L+P + G + A   L     L  +EA + G V+     E+    ++
Sbjct: 141 HLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGLVALAVEDEK----VY 196

Query: 139 PRIHAWAK----LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAF 194
            +    A+     P +++   K  +     S L    +         +  +E    + A 
Sbjct: 197 EKALEVAERLAQGPKEALHHTKHALNHWYRSFL-PHFELSLALEFLGFSGKELEEGLKAL 255

Query: 195 FNR 197
             +
Sbjct: 256 KEK 258

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Length = 267

 Score = 94.6 bits (236), Expect = 4e-24
 Identities = 26/168 (15%), Positives = 52/168 (30%), Gaps = 16/168 (9%)

Query: 30  PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
           P   I+ V G         ++  DI  A  TA            +F     L G+ P  C
Sbjct: 100 PYVTISHVRGKVNAGGLGFVSATDIAIADQTA------------SFSLSELLFGLYP-AC 146

Query: 90  SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP 149
                 R  G   A  +    + ++ QEA ++G +       ++       +    +L  
Sbjct: 147 VLPFLIRRIGRQKAHYMTLMTKPISVQEASEWGLIDAFDAESDVLLRKH--LLRLRRLNK 204

Query: 150 QSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNR 197
           + +   KQ +   +   +  A        ++ +   +    I  +   
Sbjct: 205 KGIAHYKQFMSS-LDHQVSRAKATALTANQDMFSDPQNQMGIIRYVET 251

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233

 Score = 93.4 bits (233), Expect = 6e-24
 Identities = 27/159 (16%), Positives = 44/159 (27%), Gaps = 20/159 (12%)

Query: 20  QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPF 79
            +     + YPKP++    G AI + A  L   D   A+                     
Sbjct: 85  FELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYN------------VQANE 132

Query: 80  TLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWP 139
              GMT    +  +       S   +     +    + AL  GF+  +   E     +  
Sbjct: 133 VAIGMTIPYAAMEVLKLRLTPSAYQQAAGLAKTFFGETALAAGFIDEISLPEV----VLS 188

Query: 140 RIHAWAK----LPPQSMIFAKQLVRVPMLSMLHEANKRE 174
           R    A+    L  Q+    K   R   L  +       
Sbjct: 189 RAEEAAREFAGLNQQAHNATKLRARAEALKAIRAGIDGI 227

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253

 Score = 93.7 bits (234), Expect = 7e-24
 Identities = 49/204 (24%), Positives = 73/204 (35%), Gaps = 24/204 (11%)

Query: 1   MTNNPTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASD 59
           +         E+   S++L +       YPKP +A VNGPA+      LAL CD+V   +
Sbjct: 65  LERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVA-GGAGLALACDLVVMDE 123

Query: 60  TAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEAL 119
            A                     G       SV+  R  G   A +LL TGR + A+EA 
Sbjct: 124 EA------------RLGYTEVKIGFVAAL-VSVILVRAVGEKAAKDLLLTGRLVEAREAK 170

Query: 120 QYGFVSGVFTTEEIERDLWPRIHAWAKL----PPQSMIFAKQLVRVPMLSMLHEANKREC 175
             G V+ +    +          A A+      P S+   K+L+       L +  +   
Sbjct: 171 ALGLVNRIAPPGK----ALEEAKALAEEVAKNAPTSLRLTKELLLALPGMGLEDGFRLAA 226

Query: 176 KRLEERWESEEFMNAITAFFN-RK 198
                  E+ +    I AFF  R 
Sbjct: 227 LANAWVRETGDLAEGIRAFFEKRP 250

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254

 Score = 93.4 bits (233), Expect = 1e-23
 Identities = 32/184 (17%), Positives = 55/184 (29%), Gaps = 32/184 (17%)

Query: 19  LQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHT 77
           ++  +      P   +A+ +G   G +   L   C   + +  A             F  
Sbjct: 87  IEMLLQRVAGSPSLTLALAHGRNFG-AGVDLFAACKWRYCTPEA------------GFRM 133

Query: 78  PFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDL 137
           P    G+      +  F  I G   A  +L + R  +A EA + GFV       +     
Sbjct: 134 PGLKFGLVL---GTRRFRDIVGADQALSILGSARAFDADEARRIGFVRDCAAQAQ----W 186

Query: 138 WPRIHAWAK----LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITA 193
              I A A+    L P +     +++R         A       L        F   I  
Sbjct: 187 PALIDAAAEAATALDPATRATLHRVLRDDHDDADLAA-------LARSAAQPGFKARIRD 239

Query: 194 FFNR 197
           +  +
Sbjct: 240 YLAQ 243

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Length = 264

 Score = 90.3 bits (225), Expect = 2e-22
 Identities = 42/182 (23%), Positives = 74/182 (40%), Gaps = 21/182 (11%)

Query: 19  LQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHT 77
           L +   A    P P++  +NGPAIG     LA+ CD+   +  A             F  
Sbjct: 96  LIELHKAMDASPMPVVGAINGPAIGAGLQ-LAMQCDLRVVAPDA------------FFQF 142

Query: 78  PFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDL 137
           P +  G+  +  S      + G+  A  +L +  KL A+ AL  G  + + T  +  +  
Sbjct: 143 PTSKYGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGTLADA-QAW 201

Query: 138 WPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN- 196
              I   A+L P ++  AK+++       + EA     +  ++ W S++ + A  A    
Sbjct: 202 AAEI---ARLAPLAIQHAKRVLNDDG--AIEEAWPAHKELFDKAWGSQDVIEAQVARMEK 256

Query: 197 RK 198
           R 
Sbjct: 257 RP 258

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265

 Score = 88.3 bits (220), Expect = 1e-21
 Identities = 42/169 (24%), Positives = 67/169 (39%), Gaps = 20/169 (11%)

Query: 30  PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
            KPL+  V+G  + +    LAL  DIV A +TA            TF      RG+ P G
Sbjct: 102 SKPLLVAVHGKVLTL-GIELALAADIVIADETA------------TFAQLEVNRGIYPFG 148

Query: 89  CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE---RDLWPRIHAWA 145
            +++ FPR  G   A   + T    +A EA + G V  +    E       +   I   A
Sbjct: 149 GATIRFPRTAGWGNAMRWMLTADTFDAVEAHRIGIVQEIVPVGEHVDTAIAIAQTI---A 205

Query: 146 KLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAF 194
           +  P  +    +  R+ +      A ++    + E + SE+    + AF
Sbjct: 206 RQAPLGVQATLRNARLAVREGDAAAEEQLVPTVRELFTSEDATLGVQAF 254

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268

 Score = 88.0 bits (219), Expect = 1e-21
 Identities = 39/172 (22%), Positives = 58/172 (33%), Gaps = 17/172 (9%)

Query: 30  PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
           PKP IA+V G A G     LA  CDI  AS +A             F       G+ P  
Sbjct: 99  PKPTIAMVQGAAFG-GGAGLAAACDIAIASTSA------------RFCFSEVKLGLIPAV 145

Query: 89  CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLP 148
            S  +  R  G   A  L  +    +A  A     V      + +           +   
Sbjct: 146 ISPYV-VRAIGERAAKMLFMSAEVFDATRAYSLNLVQHCVPDDTLLEFTLKYASQISNNA 204

Query: 149 PQSMIFAKQLV-RVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN-RK 198
           P+++  +KQL   V    +  E  +     +  +  S+E    + AF N   
Sbjct: 205 PEAVKNSKQLAQYVANKKIDEELVRYTASLIAHKRVSDEGQEGLKAFLNKEI 256

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256

 Score = 87.2 bits (217), Expect = 2e-21
 Identities = 40/186 (21%), Positives = 67/186 (36%), Gaps = 23/186 (12%)

Query: 19  LQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHT 77
           L      + D  KP+I  +NG A+      LAL CDI+ AS+ A             F  
Sbjct: 81  LPDISPKWPDMTKPVIGAINGAAVT-GGLELALYCDILIASENA------------KFAD 127

Query: 78  PFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE--- 134
                G+ P    SV  P+  G  +A  +  TG  L+AQ+AL+ G V+ V   +++    
Sbjct: 128 THARVGLMPTWGLSVRLPQKVGVGLARRMSLTGDYLSAQDALRAGLVTEVVAHDDLLTAA 187

Query: 135 RDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERW---ESEEFMNAI 191
           R +   I        +++                 A   E +   +       ++   + 
Sbjct: 188 RRVAASI---VGNNQKAVRALLDSYHRIDALQTGGALWAEAEAARQWMRSTSGDDIAASR 244

Query: 192 TAFFNR 197
            +   R
Sbjct: 245 ASVIER 250

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250

 Score = 86.4 bits (215), Expect = 3e-21
 Identities = 37/185 (20%), Positives = 64/185 (34%), Gaps = 23/185 (12%)

Query: 19  LQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHT 77
           +     A ++  KP IA V+G AIG      AL  D    + TA             F  
Sbjct: 83  VIDLYQAVLNVNKPTIAAVDGYAIG-MGFQFALMFDQRLMASTA------------NFVM 129

Query: 78  PFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDL 137
           P    G+     +++L     G S   E++Y  + L+A   + Y  V+ V  +      L
Sbjct: 130 PELKHGIGCSVGAAIL-GFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVESSA----L 184

Query: 138 WPRIHAWAK----LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITA 193
                  A      P  + I  K+ V  P + +L +         +  +++ +       
Sbjct: 185 LDAAITQAHVMASYPASAFINTKRAVNKPFIHLLEQTRDASKAVHKAAFQARDAQGHFKN 244

Query: 194 FFNRK 198
              +K
Sbjct: 245 VLGKK 249

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263

 Score = 85.1 bits (211), Expect = 2e-20
 Identities = 29/145 (20%), Positives = 46/145 (31%), Gaps = 21/145 (14%)

Query: 20  QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPF 79
              +      PKP IA+V G A       +A CD+ +AS  A             F  P 
Sbjct: 94  SALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAA------------RFCLPG 141

Query: 80  TLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWP 139
              G       +V   R+ G    +E+  TG   +A  AL  G ++ +         L  
Sbjct: 142 VQNGGFC-TTPAVAVSRVIGRRAVTEMALTGATYDADWALAAGLINRILPEAA----LAT 196

Query: 140 RIHAWAKL----PPQSMIFAKQLVR 160
            +   A          +    + + 
Sbjct: 197 HVADLAGALAARNQAPLRRGLETLN 221

>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279

 Score = 85.0 bits (211), Expect = 2e-20
 Identities = 37/177 (20%), Positives = 64/177 (36%), Gaps = 25/177 (14%)

Query: 28  DYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTP 86
           + PKP IA V G  I      L   CD++ A++ A+            F  P  L  +  
Sbjct: 115 NVPKPSIAAVQGRCIS-GGLLLCWPCDLIIAAEDAL------------FSDPVVLMDIGG 161

Query: 87  EGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK 146
                       G   A E+L+TGR + A+E  Q G V+ V   + ++        A A 
Sbjct: 162 VE--YHGHTWELGPRKAKEILFTGRAMTAEEVAQTGMVNRVVPRDRLD----AETRALAG 215

Query: 147 ----LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWES-EEFMNAITAFFNRK 198
               +PP ++  AK+ V   +      A  +    + +        ++      + +
Sbjct: 216 EIAKMPPFALRQAKRAVNQTLDVQGFYAAIQSVFDIHQTGHGNAMSVSGWPVLVDIE 272

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274

 Score = 84.2 bits (209), Expect = 4e-20
 Identities = 41/182 (22%), Positives = 65/182 (35%), Gaps = 25/182 (13%)

Query: 20  QKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTP 78
           Q+    F    KP++  VNG   G +        DIV AS+             ATF  P
Sbjct: 100 QEGTPPFRTMAKPVLTAVNGICCG-AGMDWVTTTDIVIASEQ------------ATFFDP 146

Query: 79  FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRK--LNAQEALQYGFVSGVFTTEEIERD 136
               G+       V   R+   S+A  +   G+   ++AQ A + G +S +   +     
Sbjct: 147 HVSIGLVAGR-ELVRVSRVLPRSIALRMALMGKHERMSAQRAYELGLISEIVEHDR---- 201

Query: 137 LWPRIHAWAKL----PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAIT 192
           L  R H  A +     P ++   +  +   +   LHEA        E    +E+      
Sbjct: 202 LLERAHEIADIVNSNAPLAVRGTRLAILKGLNVPLHEAEILAETFRERVLRTEDAAEGPR 261

Query: 193 AF 194
           AF
Sbjct: 262 AF 263

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232

 Score = 83.0 bits (206), Expect = 5e-20
 Identities = 26/165 (15%), Positives = 47/165 (28%), Gaps = 13/165 (7%)

Query: 11  EDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVF 69
              +            + +P P+I    G A+      L L  D                
Sbjct: 75  AAINLVAQGSTLARRMLSHPFPIIVACPGHAVA-KGAFLLLSADYRIGVAG--------- 124

Query: 70  VLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFT 129
               +        GMT       L       S  +  +      + + A+  GF+  V +
Sbjct: 125 --PFSIGLNEVQIGMTMHHAGIELARDRLRKSAFNRSVINAEMFDPEGAMAAGFLDKVVS 182

Query: 130 TEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRE 174
            EE++           K+   +    K  VR  +L  L  A +++
Sbjct: 183 VEELQGAALAVAAQLKKINMNAHKKTKLKVRKGLLDTLDAAIEQD 227

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440

 Score = 85.3 bits (211), Expect = 6e-20
 Identities = 36/174 (20%), Positives = 63/174 (36%), Gaps = 23/174 (13%)

Query: 30  PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
            KP +A V+G AIG     L L  D V AS  A       F L      P    G+ P G
Sbjct: 284 EKPWVAAVDGFAIG-GGAQLLLVFDRVLASSDA------YFSL------PAAKEGIIP-G 329

Query: 89  CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWA-KL 147
            +++   R  G  V+ +++  GR++ A+E      V  V   +E    L   I     +L
Sbjct: 330 AANLRLGRFAGPRVSRQVILEGRRIWAKEPEARLLVDEVVEPDE----LDAAIERSLTRL 385

Query: 148 PPQSMIFAKQLVRV--PMLSMLHEANKRECKRLEERWESEEFMNAITAFFN-RK 198
              +++  ++++ +                     R    + ++ +  F     
Sbjct: 386 DGDAVLANRRMLNLADESPDGFRAYMAEFALMQALRLYGHDVIDKVGRFGGRPP 439

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278

 Score = 83.8 bits (208), Expect = 7e-20
 Identities = 44/170 (25%), Positives = 68/170 (40%), Gaps = 22/170 (12%)

Query: 30  PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
            KPLIA V GPAI    T +    DI  A+++A             F        + P G
Sbjct: 115 KKPLIAAVEGPAIA-GGTEILQGTDIRVAAESA------------KFGISEAKWSLYPMG 161

Query: 89  CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL- 147
            S+V   R    +VA +LL TGR + A EA + G V  V    +       +    A++ 
Sbjct: 162 GSAVRLVRQIPYTVACDLLLTGRHITAAEAKEMGLVGHVVPDGQ----ALTKALEIAEII 217

Query: 148 ---PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAF 194
               P ++    + +R       +EA K + +   E + S++      AF
Sbjct: 218 AANGPLAVQAILRTIRETEGMHENEAFKIDTRIGIEVFLSDDAKEGPQAF 267

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334

 Score = 83.3 bits (206), Expect = 2e-19
 Identities = 39/174 (22%), Positives = 59/174 (33%), Gaps = 20/174 (11%)

Query: 28  DYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPE 87
             PK +I +VNG A G   +   +CD+  AS              A F       G    
Sbjct: 165 FMPKVVICLVNGWAAGGGHSLHVVCDLTLASRE-----------YARFKQTDADVGSFDG 213

Query: 88  GCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK- 146
           G  S    R  G   A E+ + GR   A++  Q G V+ V    E+E         WA  
Sbjct: 214 GYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELE----TVGLQWAAE 269

Query: 147 ---LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNR 197
                PQ+    K    + +   L        +     + ++E +    AF  +
Sbjct: 270 INAKSPQAQRMLKFAFNL-LDDGLVGQQLFAGEATRLAYMTDEAVEGRDAFLQK 322

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258

 Score = 82.2 bits (204), Expect = 2e-19
 Identities = 43/169 (25%), Positives = 61/169 (36%), Gaps = 20/169 (11%)

Query: 30  PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
            KPL+  V G         L L  DI  A+                F     LRG+ P G
Sbjct: 105 SKPLVVAVQGTCWTA-GIELMLNADIAVAARGT------------RFAHLEVLRGIPPLG 151

Query: 89  CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE---RDLWPRIHAWA 145
            S+V FPR  G + A   + TG + +A EAL+   ++ V    E      +   RI   A
Sbjct: 152 GSTVRFPRAAGWTDAMRYILTGDEFDADEALRMRLLTEVVEPGEELARALEYAERI---A 208

Query: 146 KLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAF 194
           +  P ++  A Q            A  R  + L     SE+    + A 
Sbjct: 209 RAAPLAVRAALQSAFQGRDEGDDAALSRVNESLAALIGSEDVREGVLAM 257

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256

 Score = 80.6 bits (200), Expect = 6e-19
 Identities = 41/170 (24%), Positives = 64/170 (37%), Gaps = 22/170 (12%)

Query: 30  PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
            KP+IA V G A+    T L L CD+V A  +A             F  P   RG+    
Sbjct: 93  RKPIIAAVEGFALA-GGTELVLSCDLVVAGRSA------------KFGIPEVKRGLVAGA 139

Query: 89  CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL- 147
              +  P      VA EL  TG    A++A +YGF++ +    +            A   
Sbjct: 140 GGLLRLPNRIPYQVAMELALTGESFTAEDAAKYGFINRLVDDGQ----ALDTALELAAKI 195

Query: 148 ---PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAF 194
               P ++   K+++         EA  ++ + L   + SE+      AF
Sbjct: 196 TANGPLAVAATKRIIIESASWAPEEAFAKQGEILMPIFVSEDAKEGAKAF 245

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262

 Score = 80.7 bits (200), Expect = 7e-19
 Identities = 38/169 (22%), Positives = 59/169 (34%), Gaps = 22/169 (13%)

Query: 30  PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
            KP+IA ++G A+      LAL CD+    + A                     G+    
Sbjct: 101 SKPVIAAISGHAVA-GGIELALWCDLRVVEEDA------------VLGVFCRRWGVPLID 147

Query: 89  CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE---RDLWPRIHAWA 145
             ++  PR+ G+S A +L+ TGR ++A EAL  G V+ V    +       L   I   A
Sbjct: 148 GGTIRLPRLIGHSRAMDLILTGRPVHANEALDIGLVNRVVARGQAREAAETLAAEI---A 204

Query: 146 KLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAF 194
             P Q +   +             A   E         + E +     F
Sbjct: 205 AFPQQCVRADRDSAIAQWGMAEEAALDNE--FGSIERVATEALEGAGRF 251

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265

 Score = 80.3 bits (199), Expect = 9e-19
 Identities = 40/170 (23%), Positives = 63/170 (37%), Gaps = 22/170 (12%)

Query: 30  PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
            KPLIA V G A+    T LAL  D++ A+  +             F  P   RG+   G
Sbjct: 102 AKPLIAAVEGYALA-GGTELALATDLIVAARDS------------AFGIPEVKRGLVAGG 148

Query: 89  CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL- 147
              +  P     ++A EL  TG  L+A+ A   G V+ +               A A+  
Sbjct: 149 GGLLRLPERIPYAIAMELALTGDNLSAERAHALGMVNVLAEPGA----ALDAAIALAEKI 204

Query: 148 ---PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAF 194
               P ++   K+++       L     ++ K L   + S +      AF
Sbjct: 205 TANGPLAVAATKRIITESRGWSLDTRFAQQMKILFPIFTSNDAKEGAIAF 254

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267

 Score = 79.5 bits (197), Expect = 2e-18
 Identities = 42/173 (24%), Positives = 60/173 (34%), Gaps = 25/173 (14%)

Query: 30  PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
            KP IA VNG A+G   T LAL  D+V A + A             F  P   RG+    
Sbjct: 101 DKPTIAAVNGTALG-GGTELALASDLVVADERA------------QFGLPEVKRGLIAAA 147

Query: 89  CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL- 147
                        VA  LL TG  L+A  A  +G ++ V         +     A A   
Sbjct: 148 GGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGLINEVVEAGS----VLDAALALASAI 203

Query: 148 ---PPQSMIFAKQLVRVPMLSM---LHEANKRECKRLEERWESEEFMNAITAF 194
               P S+  +K++       +         R  + +    +SE+      AF
Sbjct: 204 TVNAPLSVQASKRIAYGVDDGVVVGDEPGWDRTMREMRALLKSEDAKEGPRAF 256

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260

 Score = 78.7 bits (195), Expect = 3e-18
 Identities = 30/172 (17%), Positives = 52/172 (30%), Gaps = 15/172 (8%)

Query: 30  PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVL-QATFHTPFTLRGMTPE 87
              L++ +NG         +AL CD    +D         + +         T  G+   
Sbjct: 97  NLVLVSAINGACPA-GGCLVALTCDYRILADNP------RYCIGL-----NETQLGIIAP 144

Query: 88  GCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL 147
                      G+  A   L  G      EALQ G V  V   E+++      I  W  +
Sbjct: 145 FWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAI 204

Query: 148 PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN-RK 198
           P  +    K ++R    S L      + +        +    ++  +    K
Sbjct: 205 PDHARQLTKAMMRKATASRLVTQRDADVQNFVSFISKDSIQKSLQMYLERLK 256

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265

 Score = 78.3 bits (194), Expect = 5e-18
 Identities = 41/170 (24%), Positives = 60/170 (35%), Gaps = 22/170 (12%)

Query: 30  PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
            KPLIA VNG  +G     +    DI  + + A            TF  P   RG+ P  
Sbjct: 102 TKPLIAAVNGACLG-GGCEMLQQTDIRVSDEHA------------TFGLPEVQRGLVPGA 148

Query: 89  CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL- 147
            S V   R    + A E++ TG  L A EA  +G V  V            +  + A   
Sbjct: 149 GSMVRLKRQIPYTKAMEMILTGEPLTAFEAYHFGLVGHVVPAGT----ALDKARSLADRI 204

Query: 148 ---PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAF 194
               P ++  AK+ +         +A   E +       S +    + AF
Sbjct: 205 VRNGPLAVRNAKEAIVRSGWLAEEDARAIEARLTRPVITSADAREGLAAF 254

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Length = 275

 Score = 78.4 bits (194), Expect = 5e-18
 Identities = 44/196 (22%), Positives = 75/196 (38%), Gaps = 32/196 (16%)

Query: 14  DTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQ 72
           D     QK        PKP+IA ++G  IG     L   CDI + +  A           
Sbjct: 91  DLISRYQKTFTVIEKCPKPVIAAIHGGCIG-GGVDLISACDIRYCTQDA----------- 138

Query: 73  ATFHTPFTLRGMTPEGCSSVLFPRIFGN-SVASELLYTGRKLNAQEALQYGFVSGVFTTE 131
             F       G+  +  +    P++ GN S+ +EL +T RK+ A EAL  G VS VF  +
Sbjct: 139 -FFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDK 197

Query: 132 EIERDLWPRIHAWAKL----PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERW----- 182
           +    +     A A       P ++  +K  +       + E+           W     
Sbjct: 198 D---VMLNAAFALAADISSKSPVAVQGSKINLIYSRDHSVDESL-----DYMATWNMSML 249

Query: 183 ESEEFMNAITAFFNRK 198
           ++++ + ++ A   +K
Sbjct: 250 QTQDIIKSVQAAMEKK 265

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276

 Score = 78.0 bits (193), Expect = 9e-18
 Identities = 30/157 (19%), Positives = 51/157 (32%), Gaps = 24/157 (15%)

Query: 29  YPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTP- 86
           Y KP IA+VNG   G    +  + CD+   +D A             F       G+ P 
Sbjct: 105 YAKPTIAMVNGWCFG-GGFSPLVACDLAICADEAT------------FGLSEINWGIPPG 151

Query: 87  EGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK 146
              S  +     G+  +   + TG+    Q+A + G V+      +    L       A+
Sbjct: 152 NLVSKAM-ADTVGHRQSLMYIMTGKTFGGQKAAEMGLVNESVPLAQ----LREVTIELAR 206

Query: 147 ----LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLE 179
                 P  +  AK   +        +       +L+
Sbjct: 207 NLLEKNPVVLRAAKHGFKRCRELTWEQNEDYLYAKLD 243

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286

 Score = 77.3 bits (191), Expect = 1e-17
 Identities = 37/174 (21%), Positives = 60/174 (34%), Gaps = 22/174 (12%)

Query: 30  PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
           P P+IA V+G A       +A+CD+  A+  A             F       G+     
Sbjct: 119 PAPVIARVHGIATAAGCQLVAMCDLAVATRDA------------RFAVSGINVGLFC-ST 165

Query: 90  SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL-- 147
             V   R  G   A E+L TG  ++A +A   G V+ V   +     L   I A      
Sbjct: 166 PGVALSRNVGRKAAFEMLVTGEFVSADDAKGLGLVNRVVAPKA----LDDEIEAMVSKIV 221

Query: 148 --PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN-RK 198
             P  ++   K L    + + +  A       +         +  ++AF   R+
Sbjct: 222 AKPRAAVAMGKALFYRQIETDIESAYADAGTTMACNMMDPSALEGVSAFLEKRR 275

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275

 Score = 77.2 bits (191), Expect = 2e-17
 Identities = 34/175 (19%), Positives = 58/175 (33%), Gaps = 23/175 (13%)

Query: 30  PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
             P+IA + G  IG     LA    I  A  +A             +  P   RG+   G
Sbjct: 106 RVPVIAALKGAVIG-GGLELACAAHIRVAEASAY------------YALPEGSRGIFVGG 152

Query: 89  CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL- 147
             SV  PR+ G +  ++++ TGR  +A E + +GF   +          + +        
Sbjct: 153 GGSVRLPRLIGVARMADMMLTGRVYSAAEGVVHGFSQYLIENGS----AYDKALELGNRV 208

Query: 148 ---PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN-RK 198
               P +     Q + +   +        E          +E    I AF + + 
Sbjct: 209 AQNAPLTNFAVLQALPMIAEANPQTGLLMESLMATVAQSDQEAKTRIRAFLDHKT 263

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272

 Score = 74.1 bits (183), Expect = 2e-16
 Identities = 43/175 (24%), Positives = 69/175 (39%), Gaps = 19/175 (10%)

Query: 30  PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
           P P IA ++G A+G     LAL CDI  A+ +A                  T   + P G
Sbjct: 105 PVPTIAAIDGLALG-GGLELALACDIRVAASSAK------------MGLVETKLAIIPGG 151

Query: 89  CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL- 147
             +   PR  G S+A EL+++ R L+ +EA   G +S V    +     + +    A+  
Sbjct: 152 GGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREF 211

Query: 148 ---PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN-RK 198
               P +M  AK  +   M   L      E     +   +++ +  + AF   R 
Sbjct: 212 LPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRP 266

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305

 Score = 74.0 bits (182), Expect = 4e-16
 Identities = 27/164 (16%), Positives = 49/164 (29%), Gaps = 26/164 (15%)

Query: 28  DYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTP 86
                 IA+V G A+G      AL C  + A +                  P  L  + P
Sbjct: 138 GARAHSIALVQGNALG-GGFEAALSCHTIIAEEGV------------MMGLPEVLFDLFP 184

Query: 87  EGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK 146
              +     +     +A +++  G   +A++ L  G V  V    +        +    +
Sbjct: 185 GMGAYSFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRVVPRGQ----GVAAVEQVIR 240

Query: 147 L---PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEF 187
                P +    +Q+  +     L E       R+ E W     
Sbjct: 241 ESKRTPHAWAAMQQVREMTTAVPLEEMM-----RITEIWVDTAM 279

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258

 Score = 72.9 bits (180), Expect = 5e-16
 Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 23/175 (13%)

Query: 30  PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
             P+IA VNG A+G     LAL CD++ AS  A             F  P    G+ P  
Sbjct: 95  KTPMIAAVNGLALG-GGFELALSCDLIVASSAAE------------FGFPEVNLGVMPGA 141

Query: 89  CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWA--- 145
             +    ++ G   A E L+TG +++A+EA Q G V+ V + E     L       A   
Sbjct: 142 GGTQRLTKLIGPKRALEWLWTGARMSAKEAEQLGIVNRVVSPEL----LMEETMRLAGRL 197

Query: 146 -KLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN-RK 198
            + PP ++   K+ V+  +   L+E  + E K     + SE+    + AF   RK
Sbjct: 198 AEQPPLALRLIKEAVQKAVDYPLYEGMQFERKNFYLLFASEDQKEGMAAFLEKRK 252

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261

 Score = 72.5 bits (179), Expect = 8e-16
 Identities = 44/175 (25%), Positives = 72/175 (41%), Gaps = 23/175 (13%)

Query: 30  PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
            KP+IA ++G A+G      A+ C + FA+++A                P    G+ P  
Sbjct: 98  SKPVIAAIHGAALG-GGLEFAMSCHMRFATESAK------------LGLPELTLGLIPGF 144

Query: 89  CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWA--- 145
             +   PR  G + A E++ T   +   EAL++G V+GVF  E             A   
Sbjct: 145 AGTQRLPRYVGKAKACEMMLTSTPITGAEALKWGLVNGVFAEET----FLDDTLKVAKQI 200

Query: 146 -KLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN-RK 198
               P +     +L++    S  +E  +RE +   E + SE+    + AF   RK
Sbjct: 201 AGKSPATARAVLELLQTTKSSHYYEGVQREAQIFGEVFTSEDGREGVAAFLEKRK 255

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261

 Score = 72.6 bits (179), Expect = 8e-16
 Identities = 41/195 (21%), Positives = 78/195 (40%), Gaps = 23/195 (11%)

Query: 11  EDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVF 69
           +       L++       +PKP+I++V G   G  A  + +  D++ A+ T+        
Sbjct: 77  DPLSYDDPLRQITRMIQKFPKPIISMVEGSVWG-GAFEMIMSSDLIIAASTS-------- 127

Query: 70  VLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFT 129
               TF       G+           R  G  +  EL++T   + AQ AL  G ++ V  
Sbjct: 128 ----TFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGILNHVVE 183

Query: 130 TEEIE---RDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANK--RECKRLEERWES 184
            EE+E     +   I   ++  P ++   K+ +RV   +    +++  R        ++S
Sbjct: 184 VEELEDFTLQMAHHI---SEKAPLAIAVIKEELRVLGEAHTMNSDEFERIQGMRRAVYDS 240

Query: 185 EEFMNAITAFFN-RK 198
           E++   + AF   RK
Sbjct: 241 EDYQEGMNAFLEKRK 255

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263

 Score = 72.2 bits (178), Expect = 9e-16
 Identities = 44/175 (25%), Positives = 68/175 (38%), Gaps = 23/175 (13%)

Query: 30  PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
            KP++A V G A+G     LA+ CD+V A+DTA             F  P    G+ P  
Sbjct: 100 RKPIVAAVAGYALG-GGCELAMLCDLVIAADTA------------RFGQPEITLGILPGL 146

Query: 89  CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWA--- 145
             +    R  G + A +L  TGR L A+EA + G VS +    +    L     A A   
Sbjct: 147 GGTQRLTRAVGKAKAMDLCLTGRSLTAEEAERVGLVSRIVPAAD----LLDEALAVAQRI 202

Query: 146 -KLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN-RK 198
            ++   +    K  +       L    + E       +++ +    +TAF   R 
Sbjct: 203 ARMSRPAGRAVKDAINEAFERPLSAGMRYERDAFYAMFDTHDQTEGMTAFLEKRT 257

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260

 Score = 72.2 bits (178), Expect = 9e-16
 Identities = 52/175 (29%), Positives = 75/175 (42%), Gaps = 23/175 (13%)

Query: 30  PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
            KP+IA VNG A+G     LA+ CDI++A + A             F  P  L G  P  
Sbjct: 97  KKPVIAAVNGYALG-GGCELAMMCDIIYAGEKAQ------------FGQPEILLGTIPGA 143

Query: 89  CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWA--- 145
             +    R  G S+A E++ TG +++AQ+A Q G VS +F  E     L       A   
Sbjct: 144 GGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVET----LVEEAIQCAEKI 199

Query: 146 -KLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN-RK 198
                  +  AK+ V       L E NK E K     + +++    ++AF   RK
Sbjct: 200 ANNSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRK 254

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278

 Score = 71.8 bits (177), Expect = 1e-15
 Identities = 48/175 (27%), Positives = 71/175 (40%), Gaps = 23/175 (13%)

Query: 30  PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
             P IA V G A+G     LA+ CD++ A+DTA             F  P    G+ P  
Sbjct: 115 RTPTIAAVAGYALG-GGCELAMMCDVLIAADTAK------------FGQPEIKLGVLPGM 161

Query: 89  CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWA--- 145
             S    R  G + A +L+ TGR ++A EA + G VS V   ++    L     A A   
Sbjct: 162 GGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADD----LLTEARATATTI 217

Query: 146 -KLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN-RK 198
            ++   +   AK+ V     S L E    E +     + +E+    + AF   R 
Sbjct: 218 SQMSASAARMAKEAVNRAFESSLSEGLLYERRLFHSAFATEDQSEGMAAFIEKRA 272

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277

 Score = 71.4 bits (176), Expect = 2e-15
 Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 22/150 (14%)

Query: 30  PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
           PKP +A V G A+G +  TLAL  D   + D               F     L G+ P G
Sbjct: 115 PKPTVAAVTGYALG-AGLTLALAADWRVSGDNVK------------FGATEILAGLIPGG 161

Query: 89  CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK-- 146
                  R+ G+S A EL+++GR  +A+EAL  G +  +   ++    ++    AWA+  
Sbjct: 162 GGMGRLTRVVGSSRAKELVFSGRFFDAEEALALGLIDDMVAPDD----VYDSAVAWARRY 217

Query: 147 --LPPQSMIFAKQLVRVPMLSMLHEANKRE 174
              PP+++  AK ++         E    E
Sbjct: 218 LECPPRALAAAKAVINDVFELEATERAAAE 247

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265

 Score = 70.6 bits (174), Expect = 3e-15
 Identities = 40/177 (22%), Positives = 66/177 (37%), Gaps = 22/177 (12%)

Query: 28  DYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTP 86
             P+  IA + G  +G     +AL CD+ F  D A                P    G+  
Sbjct: 99  RSPQVYIACLEGHTVG-GGLEMALACDLRFMGDEA-----------GKIGLPEVSLGVLA 146

Query: 87  EGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK 146
               +    R+ G S A ++  TG  +  QEAL+ G V+ VF   E       R   +A+
Sbjct: 147 GTGGTQRLARLIGYSRALDMNITGETITPQEALEIGLVNRVFPQAE----TRERTREYAR 202

Query: 147 L----PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN-RK 198
                   ++   K  +       L+ A + E +     + SE+    ++AF   R+
Sbjct: 203 KLANSATYAVSNIKLAIMNGKEMPLNVAIRYEGELQNLLFRSEDAKEGLSAFLEKRQ 259

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273

 Score = 71.1 bits (175), Expect = 3e-15
 Identities = 42/135 (31%), Positives = 57/135 (42%), Gaps = 22/135 (16%)

Query: 30  PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
           PKP+IA+V G A+G     L + CD+  A+D AI            F       G    G
Sbjct: 107 PKPVIAMVKGYAVG-GGNVLNVVCDLTIAADNAI------------FGQTGPKVGSFDAG 153

Query: 89  CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK-- 146
             S    RI G+  A E+ Y  R+ NAQEAL  G V+ V   E+    +      W K  
Sbjct: 154 YGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPLEK----VEDETVQWCKEI 209

Query: 147 --LPPQSMIFAKQLV 159
               P ++ F K  +
Sbjct: 210 MKHSPTALRFLKAAM 224

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265

 Score = 69.8 bits (172), Expect = 6e-15
 Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 23/175 (13%)

Query: 30  PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
           P+P+IA +NG A+G   T L+L CD   A+++A                  T   + P  
Sbjct: 102 PQPVIAAINGIALG-GGTELSLACDFRIAAESAS------------LGLTETTLAIIPGA 148

Query: 89  CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL- 147
             +   PR+ G   A EL+YTGR+++AQEA +YG V  V         L  +    A+  
Sbjct: 149 GGTQRLPRLIGVGRAKELIYTGRRISAQEAKEYGLVEFVVPVHL----LEEKAIEIAEKI 204

Query: 148 ---PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN-RK 198
               P ++  AK+ +   +   LH   + E +  E    +++ +  + AF   R 
Sbjct: 205 ASNGPIAVRLAKEAISNGIQVDLHTGLQMEKQAYEGVIHTKDRLEGLQAFKEKRT 259

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275

 Score = 69.9 bits (172), Expect = 8e-15
 Identities = 41/135 (30%), Positives = 54/135 (40%), Gaps = 22/135 (16%)

Query: 30  PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
           PK +IA+V G AIG     L L CD+  A+D AI            F       G    G
Sbjct: 109 PKVVIALVAGYAIG-GGHVLHLVCDLTIAADNAI------------FGQTGPKVGSFDGG 155

Query: 89  CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK-- 146
             S    RI G   A E+ Y  R+ +AQEA + G V+ V   + +E         WAK  
Sbjct: 156 FGSSYLARIVGQKKAREIWYLCRQYSAQEAERMGMVNTVVPVDRLE----EEGIQWAKEI 211

Query: 147 --LPPQSMIFAKQLV 159
               P ++   K   
Sbjct: 212 LSKSPLAIRCLKAAF 226

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289

 Score = 69.2 bits (170), Expect = 2e-14
 Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 22/135 (16%)

Query: 30  PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
           PKP++A+V G +IG     L + CD+  A+D AI            F       G    G
Sbjct: 123 PKPVVAMVAGYSIG-GGHVLHMMCDLTIAADNAI------------FGQTGPKVGSFDGG 169

Query: 89  CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK-- 146
             +    RI G   A E+ +  R+ +A++AL  G V+ V    +    L      W +  
Sbjct: 170 WGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLAD----LEKETVRWCREM 225

Query: 147 --LPPQSMIFAKQLV 159
               P ++   K  +
Sbjct: 226 LQNSPMALRCLKAAL 240

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289

 Score = 69.2 bits (170), Expect = 2e-14
 Identities = 38/204 (18%), Positives = 63/204 (30%), Gaps = 24/204 (11%)

Query: 1   MTNNPTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFAS- 58
           +     +          +L          P   IA + G A G + +   L CD+ FAS 
Sbjct: 74  VPEYTAEAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARG-AGSEFLLACDMRFASR 132

Query: 59  DTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEA 118
           + AI               P    G  P   +     R+ G   A E + T    +A  A
Sbjct: 133 ENAI------------LGQPEVGIGAPPGAGAIQHLTRLLGRGRALEAVLTSSDFDADLA 180

Query: 119 LQYGFVSGVFTTEEIERDLWPRIHAWAK----LPPQSMIFAKQLVRVPMLSMLHEANKRE 174
            +YG+V+      E    L   +   A      P  ++I AK  +    L       + +
Sbjct: 181 ERYGWVNRAVPDAE----LDEFVAGIAARMSGFPRDALIAAKSAINAISLP-APAEVRAD 235

Query: 175 CKRLEERWESEEFMNAITAFFNRK 198
               ++    E+        F + 
Sbjct: 236 AALFQQLVRGEKVQQRTAELFKQG 259

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287

 Score = 67.6 bits (166), Expect = 6e-14
 Identities = 32/173 (18%), Positives = 54/173 (31%), Gaps = 24/173 (13%)

Query: 30  PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
           P+  I  + G A G          D+ FA+              A       L G+ P G
Sbjct: 106 PQVTIVKLAGKARG-GGAEFVAAADMAFAAAE-----------TAGLGQIEALMGIIPGG 153

Query: 89  CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK-- 146
             +       G + A E++ T    +A+ A  YG+++     +E    L   +   A+  
Sbjct: 154 GGTQYLRGRVGRNRALEVVLTADLFDAETAASYGWINRALPADE----LDEYVDRVARNI 209

Query: 147 --LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNR 197
             LP   +  AK+ +       L E    E       +        I+     
Sbjct: 210 AALPDGVIEAAKRSLPA---DDLKEGLLGENDAWAATFSLPAAQQLISGGLKD 259

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Length = 287

 Score = 66.5 bits (163), Expect = 1e-13
 Identities = 40/133 (30%), Positives = 57/133 (42%), Gaps = 19/133 (14%)

Query: 30  PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
           P P+IA+VNG A       +A CDI  ASD +            +F TP    G+     
Sbjct: 126 PVPVIAMVNGLATAAGCQLVASCDIAVASDKS------------SFATPGVNVGLFC-ST 172

Query: 90  SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE---RDLWPRIHAWAK 146
             V   R     VA E+L+TG  ++AQEAL +G +S V    E++     +  +I   A 
Sbjct: 173 PGVALARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKI---AS 229

Query: 147 LPPQSMIFAKQLV 159
           L    +   K   
Sbjct: 230 LSRPVVSLGKATF 242

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556

 Score = 64.2 bits (156), Expect = 2e-12
 Identities = 27/171 (15%), Positives = 49/171 (28%), Gaps = 15/171 (8%)

Query: 4   NPTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAI 62
                +N    T+ T      +        +A VNG   G     LAL CD ++  D   
Sbjct: 103 THAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAG-GGYELALACDEIYLVDDR- 160

Query: 63  LLNHPVFVLQATFHTP-FTLRGMTPE--GCSSVLFPRIFGNSVASELLYTGRKLNAQEAL 119
                     ++   P   L G+ P   G + V   R   +  A         +  + A 
Sbjct: 161 ---------SSSVSLPEVPLLGVLPGTGGLTRVTDKRKVRHDRADIFCTVVEGVRGERAK 211

Query: 120 QYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEA 170
            +  V  V    + ++ +  R    A    +        +     +   + 
Sbjct: 212 AWRLVDEVVKPNQFDQAIQARALELAAQSDRPAHAQGVPLTRIERTDREDG 262

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 16/136 (11%)

Query: 1   MTNNPTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASD 59
                   + E     I++           KP +A ++G A+G     LA+ C    ++ 
Sbjct: 73  FGEMQKGNVKEPKAGYISIDIITDLLEAARKPSVAAIDGLALGG-GLELAMACHARISAP 131

Query: 60  TAIL-LNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEA 118
            A L L             P    G+ P    +   PR+ G + A E++ T + + A+E 
Sbjct: 132 AAQLGL-------------PELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEG 178

Query: 119 LQYGFVSGVFTTEEIE 134
              G +  V    E+ 
Sbjct: 179 HSLGLIDAVVPPAELV 194

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 16/126 (12%)

Query: 11  EDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAIL-LNHPV 68
           E    ++   K  + F D   P +A +NG A+G     + L  D    +D+A + L    
Sbjct: 84  ELIAGNLEANKIFSDFEDLNVPTVAAINGIALGG-GLEMCLAADFRVMADSAKIGL---- 138

Query: 69  FVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVF 128
                    P    G+ P    +V  PR+ G   A E + +G++  A++AL+   V  V 
Sbjct: 139 ---------PEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDAVV 189

Query: 129 TTEEIE 134
           T +++ 
Sbjct: 190 TADKLG 195

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 18/130 (13%)

Query: 9   INE--DTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAIL-L 64
           I+        + L   V     Y KP++A + G A+G     LAL C    A+  A + L
Sbjct: 83  IHGFSAFTPGLALGSLVDEIQRYQKPVLAAIQGVALGG-GLELALGCHYRIANAKARVGL 141

Query: 65  NHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFV 124
                        P    G+ P    + L PR+ G  VA +L+ +G+ L+A EAL+ G +
Sbjct: 142 -------------PEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGIL 188

Query: 125 SGVFTTEEIE 134
             V  ++ +E
Sbjct: 189 DAVVKSDPVE 198

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	198
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	100.0
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	100.0
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	100.0
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	100.0
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	100.0
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	100.0
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	100.0
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	100.0
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	100.0
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	100.0
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	100.0
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	100.0
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	100.0
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	100.0
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	100.0
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	100.0
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	100.0
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	100.0
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	100.0
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	100.0
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	100.0
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	100.0
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	100.0
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	100.0
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	100.0
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	100.0
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	100.0
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	100.0
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	100.0
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	100.0
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	100.0
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	100.0
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	100.0
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	100.0
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	100.0
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	100.0
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	100.0
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	100.0
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	100.0
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	100.0
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	100.0
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	100.0
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	100.0
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	100.0
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	100.0
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	100.0
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	100.0
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	100.0
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	100.0
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	100.0
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	100.0
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	100.0
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	100.0
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	100.0
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	100.0
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	100.0
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	100.0
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	100.0
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	100.0
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	100.0
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	100.0
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	100.0
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	100.0
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	100.0
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	100.0
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	100.0
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	100.0
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	100.0
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	100.0
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	100.0
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	100.0
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	100.0
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	100.0
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	99.98
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.76
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	99.75
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	99.74
2f9y_A	339	Acetyl-COA carboxylase, carboxyltransferase alpha;	99.6
2f9i_A	327	Acetyl-coenzyme A carboxylase carboxyl transferase	99.6
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	99.59
2f9y_B	304	Acetyl-coenzyme A carboxylase carboxyl transferas	99.55
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	99.28
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	99.05
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	98.72
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	98.69
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	98.67
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	98.57
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	98.47
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	98.44
4gm2_A	205	ATP-dependent CLP protease proteolytic subunit; st	98.28
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	98.14
2f9i_B	285	Acetyl-coenzyme A carboxylase carboxyl transferase	98.04
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	97.98
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	97.97
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	97.97
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	97.85
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	97.81
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	97.7
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	97.69
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	97.42
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	97.29
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	97.19
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	97.05
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	96.86
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	96.84
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	96.82
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	96.76
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	96.72
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	96.41
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	96.35
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	96.16
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	94.08
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	84.88

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=100.00  E-value=4.2e-48  Score=319.57  Aligned_cols=186  Identities=26%  Similarity=0.337  Sum_probs=177.9

Q ss_pred             CCCCccCchhhhhhh------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEE
Q psy5402           1 MTNNPTDLINEDTDT------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQAT   74 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~   74 (198)
                      .||+|.|++++....      ...+++++..|.++||||||+|||+|+|||++|+++||+||++++            ++
T Consensus        56 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~------------a~  123 (254)
T 3hrx_A           56 AFSAGQDLTEFGDRKPDYEAHLRRYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVG------------AS  123 (254)
T ss_dssp             CSBCCBCGGGTTTSCCCHHHHTHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTCSEEEEETT------------CE
T ss_pred             CcccCccHHHhcccchhhHHHHHHHHHHHHHHHhCCCCEEEEECCEeeehhhhhhhccceeeEcCC------------CE
Confidence            489999999985432      346778899999999999999999999999999999999999999            99


Q ss_pred             EecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHH
Q psy5402          75 FHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIF  154 (198)
Q Consensus        75 ~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~  154 (198)
                      |++||+++|++|++|++++|++++|..+|+++++||++|+|+||+++||||+|||++++.+++.+++++++..||.+++.
T Consensus       124 f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~  203 (254)
T 3hrx_A          124 FTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLLLSPRLSAEEALALGLVHRVVPAEKLMEEALSLAKELAQGPTRAYAL  203 (254)
T ss_dssp             EECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             EEchhhCcCcCCcccHHHHHHHHhCcchHHHHhhcCcccCHHHHHHCCCeEEecCcHHHHHHHHHHHHHhhccchHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         155 AKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       155 ~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +|+.++.....++++.++.|...+..++.++|++||+++|+|||
T Consensus       204 ~K~~~~~~~~~~~~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR  247 (254)
T 3hrx_A          204 TKKLLLETYRLSLTEALALEAVLQGQAGQTQDHEEGVRAFREKR  247 (254)
T ss_dssp             HHHHHHHGGGSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999998

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=1.8e-47  Score=316.59  Aligned_cols=185  Identities=28%  Similarity=0.343  Sum_probs=176.8

Q ss_pred             CCCccCchhhhhhhH-----HHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEe
Q psy5402           2 TNNPTDLINEDTDTS-----ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFH   76 (198)
Q Consensus         2 ~s~G~Dl~~~~~~~~-----~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~   76 (198)
                      ||+|.|++++.....     ..+.+++.++.++||||||+|||+|+|||++|+++||+||++++            ++|+
T Consensus        62 FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~------------a~f~  129 (258)
T 4fzw_A           62 FAAGADLNEMAEKDLAATLNDTRPQLWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGEN------------ARFG  129 (258)
T ss_dssp             EEECBCHHHHHTCCHHHHHTCSHHHHHHHHHTCCSCEEEEECSEEETHHHHHHHHSSEEEEETT------------CEEE
T ss_pred             eeCCCchhhhccchhhhHHHhHHHHHHHHHHHCCCCEEEEEcCcceeeeeEeecccceEEECCC------------CEEE
Confidence            899999999865432     24567899999999999999999999999999999999999999            9999


Q ss_pred             cccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q psy5402          77 TPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAK  156 (198)
Q Consensus        77 ~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~K  156 (198)
                      +||+++|++|++|+++++++++|..+|++++++|+.++|+||+++||||+|||++++.+++.++++++++.||.+++.+|
T Consensus       130 ~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~llltg~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K  209 (258)
T 4fzw_A          130 LPEITLGIMPGAGGTQRLIRSVGKSLASKMVLSGESITAQQAQQAGLVSDVFPSDLTLEYALQLASKMARHSPLALQAAK  209 (258)
T ss_dssp             CCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             CcccCCCcCCCchHHHHHHHHhCHHHHHHHHHcCCcCcHHHHHHCCCeeEEeCchHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         157 QLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       157 ~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +.++.....++++.++.|.+.+..++.++|++|++++|+|||
T Consensus       210 ~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR  251 (258)
T 4fzw_A          210 QALRQSQEVALQAGLAQERQLFTLLAATEDRHEGISAFLQKR  251 (258)
T ss_dssp             HHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTS
T ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCC
Confidence            999999888999999999999999999999999999999998

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=4.8e-47  Score=316.58  Aligned_cols=186  Identities=25%  Similarity=0.326  Sum_probs=172.3

Q ss_pred             CCCCccCchhhhhhh-----------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcc
Q psy5402           1 MTNNPTDLINEDTDT-----------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVF   69 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~-----------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~   69 (198)
                      .||+|.|++++....           ...+++++.+|.++||||||+|||+|+|||++|+++||+||++++         
T Consensus        71 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~---------  141 (274)
T 4fzw_C           71 GFCAGQDLNDRNVDPTGPAPDLGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARS---------  141 (274)
T ss_dssp             CSBCCBCCC---------CCCHHHHHHHTHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETT---------
T ss_pred             ceeCCcChHhhhccccccchHHHHHHHHHHHHHHHHHHHCCCCEEEEECCceeecCceeeeccceEEECCC---------
Confidence            389999999874321           224567888999999999999999999999999999999999999         


Q ss_pred             cceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCH
Q psy5402          70 VLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP  149 (198)
Q Consensus        70 ~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~  149 (198)
                         ++|++||+++|++|++|++++|++++|..+|++++++|++++|+||+++||||+|||++++.+++.+++++++..||
T Consensus       142 ---a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~  218 (274)
T 4fzw_C          142 ---AKFVMAFSKLGLIPDCGGTWLLPRVAGRARAMGLALLGNQLSAEQAHEWGMIWQVVDDETLADTAQQLARHLATQPT  218 (274)
T ss_dssp             ---CEEECCGGGTTCCCTTTHHHHHHHHTCHHHHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHTTSCH
T ss_pred             ---CEEECcccCcccCCCccHHHHHHHHhhHHHHHHHHHhCCcCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHHcCCH
Confidence               99999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         150 QSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       150 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      .+++.+|+.++.....++++.++.|...+..++.++|++|++++|+|||
T Consensus       219 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Egv~AF~eKR  267 (274)
T 4fzw_C          219 FGLGLIKQAINSAETNTLDTQLDLERDYQRLAGRSADYREGVSAFLAKR  267 (274)
T ss_dssp             HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHC-C
T ss_pred             HHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCC
Confidence            9999999999999889999999999999999999999999999999998

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=100.00  E-value=3.4e-46  Score=310.06  Aligned_cols=185  Identities=24%  Similarity=0.340  Sum_probs=176.4

Q ss_pred             CCCccCchhhhhhh-------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEE
Q psy5402           2 TNNPTDLINEDTDT-------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQAT   74 (198)
Q Consensus         2 ~s~G~Dl~~~~~~~-------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~   74 (198)
                      ||+|.|++++....       ...+++++.++.++||||||+|||+|+|||++|+++||+||++++            ++
T Consensus        67 F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~------------a~  134 (265)
T 3kqf_A           67 FCAGADLKERAGMNEEQVRHAVSMIRTTMEMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAES------------AS  134 (265)
T ss_dssp             EECCBCHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETT------------CE
T ss_pred             eeeCcChHHHhccCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCC------------cE
Confidence            89999999885432       235677889999999999999999999999999999999999999            99


Q ss_pred             EecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHH
Q psy5402          75 FHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIF  154 (198)
Q Consensus        75 ~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~  154 (198)
                      |++||+++|++|++|++++|++++|..+|++++++|++++|+||+++||||+|+|++++.+++.+++++++..||.+++.
T Consensus       135 f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~  214 (265)
T 3kqf_A          135 LGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEYGLVEFVVPVHLLEEKAIEIAEKIASNGPIAVRL  214 (265)
T ss_dssp             EECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             EECcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         155 AKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       155 ~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +|+.++.....++++.++.|...+..++.++|++|++++|++||
T Consensus       215 ~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr  258 (265)
T 3kqf_A          215 AKEAISNGIQVDLHTGLQMEKQAYEGVIHTKDRLEGLQAFKEKR  258 (265)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence            99999998888999999999999999999999999999999997

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=100.00  E-value=5.5e-46  Score=308.16  Aligned_cols=186  Identities=24%  Similarity=0.342  Sum_probs=175.7

Q ss_pred             CCCCccCchhhhhhh--------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccce
Q psy5402           1 MTNNPTDLINEDTDT--------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQ   72 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~--------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~   72 (198)
                      .||+|.|++++....        ...+++++.++.++||||||+|||+|+|||++|+++||+||++++            
T Consensus        61 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~------------  128 (261)
T 3pea_A           61 FFSAGADIKEFTSVTEAKQATELAQLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATES------------  128 (261)
T ss_dssp             CSBCCBCGGGSSTTCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETT------------
T ss_pred             ceeCCcCHHHHhhcCchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCC------------
Confidence            489999999885432        123456788999999999999999999999999999999999999            


Q ss_pred             EEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHH
Q psy5402          73 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSM  152 (198)
Q Consensus        73 a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~  152 (198)
                      ++|++||+++|++|++|++++|++++|..+|++++++|++++|+||+++||||+|+|++++.+++.+++++++..||.++
T Consensus       129 a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~  208 (261)
T 3pea_A          129 AKLGLPELTLGLIPGFAGTQRLPRYVGKAKACEMMLTSTPITGAEALKWGLVNGVFAEETFLDDTLKVAKQIAGKSPATA  208 (261)
T ss_dssp             CEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHH
T ss_pred             CEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEecCHHHHHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         153 IFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       153 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +.+|+.++.....++++.++.|...+..++.++|++|++++|++||
T Consensus       209 ~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr  254 (261)
T 3pea_A          209 RAVLELLQTTKSSHYYEGVQREAQIFGEVFTSEDGREGVAAFLEKR  254 (261)
T ss_dssp             HHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence            9999999998888899999999999999999999999999999997

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}

Probab=100.00  E-value=3.2e-46  Score=311.78  Aligned_cols=186  Identities=20%  Similarity=0.190  Sum_probs=176.3

Q ss_pred             CCCCccCchhhhhhh-------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceE
Q psy5402           1 MTNNPTDLINEDTDT-------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA   73 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~-------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a   73 (198)
                      .||+|.|++++....       ...+++++.+|.++||||||+|||+|+|||++|+++||+||++++            +
T Consensus        70 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~------------a  137 (275)
T 3hin_A           70 HFSAGLDLSELRERDATEGLVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEAS------------A  137 (275)
T ss_dssp             CSBCCBCGGGCCCCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETT------------C
T ss_pred             CccCCCCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCC------------C
Confidence            489999999885422       235677889999999999999999999999999999999999999            9


Q ss_pred             EEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHH
Q psy5402          74 TFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMI  153 (198)
Q Consensus        74 ~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~  153 (198)
                      +|++||+++|++|++|++++|++++|..+|++++++|++++|+||+++||||+|||++++.+++.+++++++..||.+++
T Consensus       138 ~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~p~a~~  217 (275)
T 3hin_A          138 YYALPEGSRGIFVGGGGSVRLPRLIGVARMADMMLTGRVYSAAEGVVHGFSQYLIENGSAYDKALELGNRVAQNAPLTNF  217 (275)
T ss_dssp             EEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEESSSCHHHHHHHHHHHHTTSCHHHHH
T ss_pred             EEECchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCCEEeChhHHHHHHHHHHHHHHhCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         154 FAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       154 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      .+|+.++.....++++.++.|...+..++.++|++|++++|++||
T Consensus       218 ~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR  262 (275)
T 3hin_A          218 AVLQALPMIAEANPQTGLLMESLMATVAQSDQEAKTRIRAFLDHK  262 (275)
T ss_dssp             HHHTHHHHHHHSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence            999999998888899999999999999999999999999999986

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=100.00  E-value=9.5e-46  Score=305.81  Aligned_cols=186  Identities=26%  Similarity=0.411  Sum_probs=174.2

Q ss_pred             CCCCccCchhhhhh-hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEeccc
Q psy5402           1 MTNNPTDLINEDTD-TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPF   79 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~-~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe   79 (198)
                      .||+|.|++++... ....+++++.++.++||||||+|||+|+|||++|+++||+||++++            ++|++||
T Consensus        62 ~F~aG~Dl~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~------------a~f~~pe  129 (255)
T 3p5m_A           62 AFCSGGDLTGGDTAGAADAANRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPA------------SYFQLAF  129 (255)
T ss_dssp             CSBCEECC---CHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEECTT------------CEEECGG
T ss_pred             CccCCCChhhhcchHHHHHHHHHHHHHHhCCCCEEEEeCCeehhhHHHHHHHCCEEEEcCC------------cEEeCcc
Confidence            48999999988632 2345678899999999999999999999999999999999999999            9999999


Q ss_pred             ccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q psy5402          80 TLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLV  159 (198)
Q Consensus        80 ~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l  159 (198)
                      +++|++|++|++++|++++|..+|++++++|+.++|+||+++||||+|+|++++.+++.+++++++..||.+++.+|+.+
T Consensus       130 ~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l  209 (255)
T 3p5m_A          130 TRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGMISHITSADEYESVLTDVLRSVSGGPTLAFGWTKRAL  209 (255)
T ss_dssp             GGGTCCCCTTHHHHTHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEECCTTCHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             cccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         160 RVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       160 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +.....++++.++.|...+..++.++|++|++++|++||
T Consensus       210 ~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr  248 (255)
T 3p5m_A          210 AAATLAELEPVQAIEAEGQLALVETADFREGARAFRERR  248 (255)
T ss_dssp             HHHHCTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTS
T ss_pred             HHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence            998888899999999999999999999999999999997

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=100.00  E-value=1.5e-45  Score=308.11  Aligned_cols=186  Identities=22%  Similarity=0.228  Sum_probs=176.2

Q ss_pred             CCCCccCchhhhhhh-----------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcc
Q psy5402           1 MTNNPTDLINEDTDT-----------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVF   69 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~-----------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~   69 (198)
                      .||+|.|++++....           ...+++++.+|.++||||||+|||+|+|||++|+++||+|||+++         
T Consensus        73 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~---------  143 (279)
T 3g64_A           73 GFCSGGDVDEIIGATLSMDTARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPS---------  143 (279)
T ss_dssp             CSBCCBCTTTTHHHHTTCCHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEECTT---------
T ss_pred             ceecCcCHHHHhhccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeccccHHHHHhCCEEEEeCC---------
Confidence            489999999885432           224567889999999999999999999999999999999999999         


Q ss_pred             cceEEEeccccccccc-CCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCC
Q psy5402          70 VLQATFHTPFTLRGMT-PEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLP  148 (198)
Q Consensus        70 ~~~a~~~~pe~~~Gi~-p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~  148 (198)
                         ++|++||+++|++ |++|++++|++++|..+|++++++|+.++|+||+++||||+|+|++++.+++.+++++|+..|
T Consensus       144 ---a~f~~pe~~~Gl~~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~  220 (279)
T 3g64_A          144 ---TRFAFLFTRVGLSGGDMGAAYLLPRVVGLGHATRLLMLGDTVRAPEAERIGLISELTEEGRADEAARTLARRLADGP  220 (279)
T ss_dssp             ---CEEECCGGGGTCCSCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTCCSEECCTTCHHHHHHHHHHHHHTSC
T ss_pred             ---CEEeCchhhcCCCCCchhHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEecCchHHHHHHHHHHHHHHhCC
Confidence               9999999999999 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         149 PQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       149 ~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      |.+++.+|+.++.....++++.++.|...+..++.++|++|++++|++||
T Consensus       221 ~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr  270 (279)
T 3g64_A          221 ALAHAQTKALLTAELDMPLAAAVELDASTQALLMTGEDYAEFHAAFTEKR  270 (279)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCC
Confidence            99999999999998888999999999999999999999999999999997

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=100.00  E-value=7.9e-46  Score=307.58  Aligned_cols=185  Identities=24%  Similarity=0.314  Sum_probs=175.6

Q ss_pred             CCCccCchhhhhhhH-----HHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEe
Q psy5402           2 TNNPTDLINEDTDTS-----ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFH   76 (198)
Q Consensus         2 ~s~G~Dl~~~~~~~~-----~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~   76 (198)
                      ||+|.|++++.....     ..+++++.++.++||||||+|||+|+|||++|+++||+||++++            ++|+
T Consensus        67 F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~------------a~f~  134 (263)
T 3moy_A           67 FAAGADIAEMVTLTPHQARERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADT------------ARFG  134 (263)
T ss_dssp             EEESBCHHHHTTCCHHHHHHTTTTHHHHHHTTCCSCEEEEECBEEETHHHHHHHHSSEEEEETT------------CEEE
T ss_pred             eeCCcChHHHhccCchhHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHHCCEEEecCC------------CEEe
Confidence            899999999865332     23456788999999999999999999999999999999999999            9999


Q ss_pred             cccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q psy5402          77 TPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAK  156 (198)
Q Consensus        77 ~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~K  156 (198)
                      +||+++|++|++|++++|++++|..+|++++++|+.++|+||+++||||+|+|++++.+++.+++++++..||.+++.+|
T Consensus       135 ~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  214 (263)
T 3moy_A          135 QPEITLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEEAERVGLVSRIVPAADLLDEALAVAQRIARMSRPAGRAVK  214 (263)
T ss_dssp             CGGGGGTCCCSSSTTTHHHHHHCHHHHHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             CcccccCCCCchhHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEecCchHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         157 QLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       157 ~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +.++.....++++.++.|...+..++.++|++|++++|++||
T Consensus       215 ~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR  256 (263)
T 3moy_A          215 DAINEAFERPLSAGMRYERDAFYAMFDTHDQTEGMTAFLEKR  256 (263)
T ss_dssp             HHHHHTTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTS
T ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCC
Confidence            999998888999999999999999999999999999999997

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=100.00  E-value=1.1e-45  Score=307.36  Aligned_cols=185  Identities=23%  Similarity=0.278  Sum_probs=172.5

Q ss_pred             CCCCccCchhhhhhh----------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCccc
Q psy5402           1 MTNNPTDLINEDTDT----------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFV   70 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~----------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~   70 (198)
                      .||+|.|++++....          ...+++++.++.++||||||+|||+|+|||++|+++||+||++++          
T Consensus        60 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~----------  129 (268)
T 3i47_A           60 HFSAGADLTWMQSMANFTEEENLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTS----------  129 (268)
T ss_dssp             CSBCSBCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETT----------
T ss_pred             CeeCCCChhhhhccccccHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEhHhHHHHHhCCEEEEcCC----------
Confidence            489999999875421          234667889999999999999999999999999999999999999          


Q ss_pred             ceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHH
Q psy5402          71 LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQ  150 (198)
Q Consensus        71 ~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~  150 (198)
                        ++|++||+++|++|++|++ ++++++|..+|++++++|++++|+||+++||||+|+|++++.+++.+++++|+..||.
T Consensus       130 --a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~  206 (268)
T 3i47_A          130 --ARFCFSEVKLGLIPAVISP-YVVRAIGERAAKMLFMSAEVFDATRAYSLNLVQHCVPDDTLLEFTLKYASQISNNAPE  206 (268)
T ss_dssp             --CEEECCGGGGTCCCTTTHH-HHHHHHCHHHHHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHH
T ss_pred             --CEEECcccccCCCcccHHH-HHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHcCCHH
Confidence              9999999999999999887 7899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhchhhhcHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         151 SMIFAKQLVRVPMLSMLHE-ANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       151 a~~~~K~~l~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +++.+|+.++.....++++ .++.|...+..++.++|++|++++|++||
T Consensus       207 a~~~~K~~l~~~~~~~l~~~~~~~e~~~~~~~~~s~d~~eg~~AF~ekR  255 (268)
T 3i47_A          207 AVKNSKQLAQYVANKKIDEELVRYTASLIAHKRVSDEGQEGLKAFLNKE  255 (268)
T ss_dssp             HHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHSHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCC
Confidence            9999999999987777777 67889999999999999999999999997

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=2.3e-46  Score=309.53  Aligned_cols=185  Identities=30%  Similarity=0.458  Sum_probs=139.4

Q ss_pred             CCCccCchhhhhhh--------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceE
Q psy5402           2 TNNPTDLINEDTDT--------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA   73 (198)
Q Consensus         2 ~s~G~Dl~~~~~~~--------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a   73 (198)
                      ||+|.|++++....        ...+++++.++.++||||||+|||+|+|||++|+++||+||++++            +
T Consensus        63 F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~------------a  130 (256)
T 3qmj_A           63 FSAGTDLAEMQARITDPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSST------------A  130 (256)
T ss_dssp             EECCBCHHHHHHHHHSSSCCCCSSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEEETT------------C
T ss_pred             cccCcCHHHHhhcccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEeCC------------C
Confidence            89999999885421        346788999999999999999999999999999999999999999            9


Q ss_pred             EEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHH
Q psy5402          74 TFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMI  153 (198)
Q Consensus        74 ~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~  153 (198)
                      +|++||+++|++|++|++++|++++|..+|++++++|++++|+||+++||||+|+|++++.+++.+++++++..||.+++
T Consensus       131 ~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~  210 (256)
T 3qmj_A          131 RLKCPFTSLGVAPEAASSYLLPQLVGRQNAAWLLMSSEWIDAEEALRMGLVWRICSPEELLPEARRHAEILAAKPISSLM  210 (256)
T ss_dssp             EEECCGGGC---CCTTHHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH
T ss_pred             EEECcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEEeCHhHHHHHHHHHHHHHHhCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         154 FAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       154 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      .+|+.++.....++++.++.|...+..++.++|++|++++|++||
T Consensus       211 ~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr  255 (256)
T 3qmj_A          211 AVKHTMVEPNRAQIAAASARENAHFAELMGAQANAAALADFTDRR  255 (256)
T ss_dssp             HHHHHHHCC------------------------------------
T ss_pred             HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHccC
Confidence            999999998888899999999999999999999999999999997

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=100.00  E-value=3.1e-45  Score=302.91  Aligned_cols=186  Identities=23%  Similarity=0.346  Sum_probs=171.1

Q ss_pred             CCCCccCchhhhhhh-----HH-HHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEE
Q psy5402           1 MTNNPTDLINEDTDT-----SI-TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQAT   74 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~-----~~-~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~   74 (198)
                      .||+|.|++++....     .. .+++++.+|.++||||||+|||+|+|||++|+++||+||++++            ++
T Consensus        59 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~------------a~  126 (257)
T 2ej5_A           59 AFCAGEDLSGVTEEMDHGDVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEK------------AS  126 (257)
T ss_dssp             CSBCCBCC-------CHHHHHHHTHHHHHHHHHHCCSCEEEEECSEEETHHHHHHHHSSEEEEETT------------CE
T ss_pred             CccCCcCHHHHhhccchhHHHHHHHHHHHHHHHhCCCCEEEEECccccchhHHHHHhCCEEEEcCC------------CE
Confidence            489999999875421     11 2577889999999999999999999999999999999999999            99


Q ss_pred             EecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHH
Q psy5402          75 FHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIF  154 (198)
Q Consensus        75 ~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~  154 (198)
                      |++||+++|++|++|++++|++++|..+|++++++|+.++|+||+++||||+|+|++++.+.+.+++++++..||.+++.
T Consensus       127 f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~  206 (257)
T 2ej5_A          127 FAPAFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVTAEEAAALGLATKVIPLSDWEEEVKQFAERLSAMPTKAIGL  206 (257)
T ss_dssp             EECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTCCSEEECGGGHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             EeCcccccCCCCcchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCcceecChhHHHHHHHHHHHHHHhCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         155 AKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       155 ~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +|+.++.....++++.++.|...+..++.++|++|++++|++||
T Consensus       207 ~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr  250 (257)
T 2ej5_A          207 IKRLLRESEETTFDRYLEREAECQRIAGLTSDHREGVKAFFEKR  250 (257)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTTC
T ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHhCChHHHHHHHHHhcCC
Confidence            99999998888899999999999999999999999999999987

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=100.00  E-value=1.2e-45  Score=306.03  Aligned_cols=186  Identities=40%  Similarity=0.676  Sum_probs=174.4

Q ss_pred             CCCCccCchhhhhhh-----------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcc
Q psy5402           1 MTNNPTDLINEDTDT-----------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVF   69 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~-----------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~   69 (198)
                      .||+|.|++++....           ...+++++.++.++||||||+|||+|+|||++|+++||+||++++         
T Consensus        61 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~---------  131 (261)
T 2gtr_A           61 VFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEK---------  131 (261)
T ss_dssp             CSBCEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETT---------
T ss_pred             ccccccCchhhhhccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeEeeHHHHHHHhCCEEEEcCC---------
Confidence            489999999875311           123567888999999999999999999999999999999999999         


Q ss_pred             cceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCH
Q psy5402          70 VLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP  149 (198)
Q Consensus        70 ~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~  149 (198)
                         ++|++||+++|++|++|+++++++++|..+|++++++|+.++|+||+++||||+|+|++++.+++.++++++++.||
T Consensus       132 ---a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p  208 (261)
T 2gtr_A          132 ---AWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELASCNP  208 (261)
T ss_dssp             ---CEEECCTTTTTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCH
T ss_pred             ---CEEeCchhccCCCccchHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCcccccChhHHHHHHHHHHHHHHhCCH
Confidence               99999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         150 QSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       150 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      .+++.+|+.++.....++++.++.|...+..++.++|++|++.+|++||
T Consensus       209 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr  257 (261)
T 2gtr_A          209 VVLEESKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLKYLQRK  257 (261)
T ss_dssp             HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHSTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Confidence            9999999999998887889999999999999999999999999999986

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=100.00  E-value=4.7e-45  Score=303.10  Aligned_cols=185  Identities=20%  Similarity=0.230  Sum_probs=174.8

Q ss_pred             CCCccCchhhhhh------hHHHH-HHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceE-
Q psy5402           2 TNNPTDLINEDTD------TSITL-QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA-   73 (198)
Q Consensus         2 ~s~G~Dl~~~~~~------~~~~~-~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a-   73 (198)
                      ||+|.|++++...      ....+ ++++.+|.++||||||+|||+|+|||++|+++||+||++++            + 
T Consensus        66 F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~------------ag  133 (265)
T 2ppy_A           66 FSAGADINFLRSADPRFKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDE------------AG  133 (265)
T ss_dssp             EECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHTSSEEEEETT------------CC
T ss_pred             eeeCcCHHHHhccchhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEEeeHHHHHHHhCCEEEEeCC------------CC
Confidence            8999999987541      12345 77889999999999999999999999999999999999999            9 


Q ss_pred             EEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHH
Q psy5402          74 TFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMI  153 (198)
Q Consensus        74 ~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~  153 (198)
                      +|++||+++|++|++|++++|++++|..+|++++++|+.++|+||+++||||+|+|++++.+.+.+++++++..||.+++
T Consensus       134 ~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~  213 (265)
T 2ppy_A          134 KIGLPEVSLGVLAGTGGTQRLARLIGYSRALDMNITGETITPQEALEIGLVNRVFPQAETRERTREYARKLANSATYAVS  213 (265)
T ss_dssp             CEECCGGGGTCCCTTTHHHHHHHHHCHHHHHHHHHHCCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH
T ss_pred             EEECcccccCCCCCchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         154 FAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       154 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      .+|+.++.....++++.++.|.+.+..++.++|++|++++|++||
T Consensus       214 ~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr  258 (265)
T 2ppy_A          214 NIKLAIMNGKEMPLNVAIRYEGELQNLLFRSEDAKEGLSAFLEKR  258 (265)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence            999999998888899999999999999999999999999999987

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=100.00  E-value=3.6e-45  Score=304.06  Aligned_cols=183  Identities=30%  Similarity=0.436  Sum_probs=170.0

Q ss_pred             CCCCccCchhhh---hh------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccc
Q psy5402           1 MTNNPTDLINED---TD------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVL   71 (198)
Q Consensus         1 ~~s~G~Dl~~~~---~~------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~   71 (198)
                      .||+|.|++++.   ..      ....+++++.++.++||||||+|||+|+|||++|+++||+||++++           
T Consensus        61 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-----------  129 (266)
T 3fdu_A           61 DFTAGNDMKDFMGFVQNPNAGPAGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNT-----------  129 (266)
T ss_dssp             CSBCCBCHHHHHHHHHSCCCSCGGGSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEECTT-----------
T ss_pred             CeECCcCHHHHhhhccccchhhHHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCC-----------
Confidence            489999999986   21      2345678899999999999999999999999999999999999999           


Q ss_pred             eEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHH
Q psy5402          72 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQS  151 (198)
Q Consensus        72 ~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a  151 (198)
                       ++|++||+++|++|++|++++|++++|..+|++++++|+.++|+||+++||||+|+|  ++.+++.+++++|+..||.+
T Consensus       130 -a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~i~A~eA~~~GLv~~vv~--~l~~~a~~~a~~la~~~~~a  206 (266)
T 3fdu_A          130 -ALFQIPFVSLGLSPEGGASQLLVKQAGYHKAAELLFTAKKFNAETALQAGLVNEIVE--DAYATAQATAQHLTALPLAS  206 (266)
T ss_dssp             -CEEECCTTTTTCCCCTTHHHHHHHHHCHHHHHHHHHHCCEECHHHHHHTTSCSEECS--CHHHHHHHHHHHHHTSCHHH
T ss_pred             -CEEECchhhhCCCCcchHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHCCCHHHHHH--HHHHHHHHHHHHHHhCCHHH
Confidence             999999999999999999999999999999999999999999999999999999999  89999999999999999999


Q ss_pred             HHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         152 MIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       152 ~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      ++.+|+.++... .++++.++.|...+..++.++|++|++++|++||
T Consensus       207 ~~~~K~~l~~~~-~~l~~~l~~e~~~~~~~~~s~d~~eg~~aF~ekR  252 (266)
T 3fdu_A          207 LKQTKALMKHDL-DQIIECIDHEAEIFMQRVQSPEMLEAVQAFMQKR  252 (266)
T ss_dssp             HHHHHHHHTTTH-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHC---
T ss_pred             HHHHHHHHHhhh-ccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence            999999999875 5788999999999999999999999999999997

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=100.00  E-value=3.2e-45  Score=307.85  Aligned_cols=186  Identities=23%  Similarity=0.257  Sum_probs=170.5

Q ss_pred             CCCCccCchhhhhh--------------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCC
Q psy5402           1 MTNNPTDLINEDTD--------------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNH   66 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~--------------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~   66 (198)
                      .||+|.|++++...              ....+++++.+|.++||||||+|||+|+|||++|+++||+||++++      
T Consensus        80 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~------  153 (290)
T 3sll_A           80 GFCSGADQKSAGPIPHIGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQD------  153 (290)
T ss_dssp             CSBCC------CCCSSCTTCCHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETT------
T ss_pred             CeeCCcChHHHhcccccccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeehHHHHHHHHHCCEEEEeCC------
Confidence            48999999987432              2345678899999999999999999999999999999999999999      


Q ss_pred             CcccceEEEecccccccccCC-chhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHh
Q psy5402          67 PVFVLQATFHTPFTLRGMTPE-GCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWA  145 (198)
Q Consensus        67 ~~~~~~a~~~~pe~~~Gi~p~-~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la  145 (198)
                            ++|++||+++|++|+ +|++++|++++|..+|++++++|++++|+||+++||||+|+|++++.+++.+++++|+
T Consensus       154 ------a~f~~pe~~~Gl~p~~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la  227 (290)
T 3sll_A          154 ------AYFRAAGINNGLTASELGLSYLLPRAIGTSRASDIMLTGRDVDADEAERIGLVSRKVASESLLEECYAIGERIA  227 (290)
T ss_dssp             ------CEEECTTTTTTSCSCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHH
T ss_pred             ------CEEECchhccCcCCCcccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEEeChhHHHHHHHHHHHHHH
Confidence                  999999999999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHhhchhh-hcHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHccC
Q psy5402         146 KLPPQSMIFAKQLVRVPML-SMLHEANKRECKRLEERW-ESEEFMNAITAFFNRK  198 (198)
Q Consensus       146 ~~~~~a~~~~K~~l~~~~~-~~~~~~~~~e~~~~~~~~-~~~~~~e~~~af~~kr  198 (198)
                      ..||.+++.+|+.++.... .++++.++.|...+..++ .++|++|++++|++||
T Consensus       228 ~~~~~a~~~~K~~l~~~~~~~~l~~~l~~e~~~~~~~~~~s~d~~eg~~AFlekR  282 (290)
T 3sll_A          228 GFSRPGIELTKRTIWSGLDAASLESHMHQEGLGQLYVRLLTDNFEEATAARKEKR  282 (290)
T ss_dssp             HSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTTS
T ss_pred             cCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCC
Confidence            9999999999999999888 889999999999999999 9999999999999997

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=100.00  E-value=2.3e-45  Score=304.76  Aligned_cols=185  Identities=21%  Similarity=0.310  Sum_probs=172.0

Q ss_pred             CCCccCchhhhh--h--h-------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCccc
Q psy5402           2 TNNPTDLINEDT--D--T-------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFV   70 (198)
Q Consensus         2 ~s~G~Dl~~~~~--~--~-------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~   70 (198)
                      ||+|.|++++..  .  .       ...+++++.++.++||||||+|||+|+|||++|+++||+||++++          
T Consensus        62 F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~----------  131 (263)
T 3lke_A           62 FSSGPRLEDLLICASDQSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRR----------  131 (263)
T ss_dssp             EECBSCHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHTCSSEEEEEECSEEETHHHHGGGGSSEEEEETT----------
T ss_pred             EecCcCHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEcCC----------
Confidence            399999999865  1  1       234567899999999999999999999999999999999999999          


Q ss_pred             ceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccC-chhHHHHHHHHHHHHhcCCH
Q psy5402          71 LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFT-TEEIERDLWPRIHAWAKLPP  149 (198)
Q Consensus        71 ~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~-~~~l~~~a~~~a~~la~~~~  149 (198)
                        ++|++||+++|++|++|++++|++++|..+|++++++|+.++|+||+++||||+|+| ++++.+++.++++++++.||
T Consensus       132 --a~f~~pe~~~Gl~p~~g~~~~L~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~~  209 (263)
T 3lke_A          132 --AKFLENFHKMGISPDLGASYFLPRIIGYEQTMNLLLEGKLFTSEEALRLGLIQEICENKQELQERVKNYLKAVSEGYV  209 (263)
T ss_dssp             --CEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHTSCH
T ss_pred             --CEEeCchHhhCCCCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCCcEecCChhHHHHHHHHHHHHHHhCCH
Confidence              999999999999999999999999999999999999999999999999999999999 99999999999999999999


Q ss_pred             HHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         150 QSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       150 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      .+++.+|+.++.....++++.++.|...+..++.++|++|++++|++++
T Consensus       210 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~~~  258 (263)
T 3lke_A          210 PAIAATKKLLKGKAAEELKQQLEQETEELVALFKQTEIKKRLEALVEGH  258 (263)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHhhhccC
Confidence            9999999999999888899999999999999999999999999999985

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=100.00  E-value=2.4e-45  Score=306.91  Aligned_cols=185  Identities=24%  Similarity=0.321  Sum_probs=173.4

Q ss_pred             CCCccCchhhhhhhHHH-----HHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEe
Q psy5402           2 TNNPTDLINEDTDTSIT-----LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFH   76 (198)
Q Consensus         2 ~s~G~Dl~~~~~~~~~~-----~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~   76 (198)
                      ||+|.|++++.......     +...+.++.++||||||+|||+|+|||++|+++||+||++++            ++|+
T Consensus        82 F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~------------a~f~  149 (278)
T 3h81_A           82 FAAGADIKEMADLTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADT------------AKFG  149 (278)
T ss_dssp             EECCBCSHHHHTCCHHHHHHHTTTGGGHHHHTCCSCEEEEECBEEETHHHHHHHHSSEEEEETT------------CEEE
T ss_pred             eecCcCHHHHhccChhhHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEcCC------------CEEE
Confidence            89999999986543211     112267899999999999999999999999999999999999            9999


Q ss_pred             cccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q psy5402          77 TPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAK  156 (198)
Q Consensus        77 ~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~K  156 (198)
                      +||+++|++|++|++++|++++|..+|++++++|++++|+||+++||||+|+|++++.+++.+++++|+..||.+++.+|
T Consensus       150 ~pe~~lGl~p~~g~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K  229 (278)
T 3h81_A          150 QPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMSASAARMAK  229 (278)
T ss_dssp             CGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             CchhhcCcCCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         157 QLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       157 ~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +.++.....++++.++.|...+..++.++|++|++++|++||
T Consensus       230 ~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR  271 (278)
T 3h81_A          230 EAVNRAFESSLSEGLLYERRLFHSAFATEDQSEGMAAFIEKR  271 (278)
T ss_dssp             HHHHHTTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTS
T ss_pred             HHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence            999998888999999999999999999999999999999997

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=100.00  E-value=3.6e-45  Score=304.40  Aligned_cols=186  Identities=23%  Similarity=0.333  Sum_probs=174.7

Q ss_pred             CCCCccCchhhhhh-----h-------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCc
Q psy5402           1 MTNNPTDLINEDTD-----T-------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPV   68 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~-----~-------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~   68 (198)
                      .||+|.|++++...     .       ...+++++.+|.++||||||+|||+|+|||++|+++||+||++++        
T Consensus        59 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~--------  130 (269)
T 1nzy_A           59 AFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADS--------  130 (269)
T ss_dssp             CSBCCBCGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETT--------
T ss_pred             CcccCcCHHHHhhcccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEecCC--------
Confidence            48999999987432     1       123567888999999999999999999999999999999999999        


Q ss_pred             ccceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCC
Q psy5402          69 FVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLP  148 (198)
Q Consensus        69 ~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~  148 (198)
                          ++|++||+++|++|++|++++|++++|..+|++++++|+.++|+||+++||||+|+|++++.+++.++++++++.|
T Consensus       131 ----a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~  206 (269)
T 1nzy_A          131 ----AKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVARELAAAP  206 (269)
T ss_dssp             ----CEEECCHHHHTCCCCTTHHHHHHHHHHHHHHHHHHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHHHHHHHHHHSC
T ss_pred             ----CEEeCcccccCCCCCccHHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHcCC
Confidence                9999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         149 PQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       149 ~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      |.+++.+|+.++.....++++.++.|...+..++.++|++|++++|++||
T Consensus       207 p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr  256 (269)
T 1nzy_A          207 THLQVMAKERFHAGWMQPVEECTEFEIQNVIASVTHPHFMPCLTRFLDGH  256 (269)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHSTTHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Confidence            99999999999998888899999999999999999999999999999987

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=2.2e-45  Score=308.93  Aligned_cols=186  Identities=36%  Similarity=0.605  Sum_probs=171.3

Q ss_pred             CCCCccCchhhhhhh-----------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcc
Q psy5402           1 MTNNPTDLINEDTDT-----------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVF   69 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~-----------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~   69 (198)
                      .||+|.|++++....           ...+++++.++.++||||||+|||+|+|||++|+++||+|||+++         
T Consensus        79 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~---------  149 (291)
T 2fbm_A           79 VFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEK---------  149 (291)
T ss_dssp             CSBCCBCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETT---------
T ss_pred             CccCCcCHHHHHhcccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCC---------
Confidence            489999999875311           123567888999999999999999999999999999999999999         


Q ss_pred             cceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCH
Q psy5402          70 VLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP  149 (198)
Q Consensus        70 ~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~  149 (198)
                         ++|++||+++|++|++|++++|++++|..+|++++++|+.++|+||+++||||+|+|++++.+++.+++++++..||
T Consensus       150 ---a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~el~ltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p  226 (291)
T 2fbm_A          150 ---AWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNP  226 (291)
T ss_dssp             ---CEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHTSCCEEEHHHHHHTTSCSEEECSTTSHHHHHHHHHHHTTSCH
T ss_pred             ---CEEECcHHhcCCCCcccHHHHHHHHHhHHHHHHHHHcCCccCHHHHHHCCCcceecChhHHHHHHHHHHHHHHhCCH
Confidence               99999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HccC
Q psy5402         150 QSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAF-FNRK  198 (198)
Q Consensus       150 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af-~~kr  198 (198)
                      .+++.+|+.++.....++++.++.|...+..++.++|++|++.+| ++||
T Consensus       227 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~Af~~ekR  276 (291)
T 2fbm_A          227 IVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKIPLLGY  276 (291)
T ss_dssp             HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTC-----
T ss_pred             HHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence            999999999999877788999999999999999999999999999 9987

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=4.9e-45  Score=305.27  Aligned_cols=186  Identities=46%  Similarity=0.806  Sum_probs=163.1

Q ss_pred             CCCCccCchhhhhhh-----------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcc
Q psy5402           1 MTNNPTDLINEDTDT-----------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVF   69 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~-----------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~   69 (198)
                      .||+|.|++++....           ...+++++.+|.++||||||+|||+|+|||++|+++||+||++++         
T Consensus        81 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~---------  151 (280)
T 2f6q_A           81 YYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDR---------  151 (280)
T ss_dssp             CSBCCBCC----CCCTTHHHHHHHHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETT---------
T ss_pred             CcccCCCHHHHhhcCcchhhHHHHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEECCC---------
Confidence            489999999874311           124567888999999999999999999999999999999999999         


Q ss_pred             cceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCH
Q psy5402          70 VLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP  149 (198)
Q Consensus        70 ~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~  149 (198)
                         ++|++||+++|++|++|+++++++++|..+|++++++|++++|+||+++||||+|+|++++.+++.+++++++..||
T Consensus       152 ---a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~  228 (280)
T 2f6q_A          152 ---ATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPP  228 (280)
T ss_dssp             ---CEEECCTGGGTCCCCTTHHHHHHHHHCHHHHHHHHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHHHHHHHTTSCH
T ss_pred             ---cEEECchHhhCCCCcccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCcceEECHHHHHHHHHHHHHHHHhCCH
Confidence               99999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         150 QSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       150 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      .+++.+|+.++.....++++.++.|.+.+..++.++|++|++++|++||
T Consensus       229 ~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekR  277 (280)
T 2f6q_A          229 NALRISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTNAVVNFLSRK  277 (280)
T ss_dssp             HHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHTSHHHHC---------
T ss_pred             HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Confidence            9999999999998777888999999999999999999999999999987

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=100.00  E-value=4.8e-45  Score=301.94  Aligned_cols=184  Identities=25%  Similarity=0.326  Sum_probs=173.2

Q ss_pred             CCCccCchhhhhhhH--H----HHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEE
Q psy5402           2 TNNPTDLINEDTDTS--I----TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATF   75 (198)
Q Consensus         2 ~s~G~Dl~~~~~~~~--~----~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~   75 (198)
                      ||+|.|++++.....  .    .+ +++.++.++||||||+|||+|+|||++|+++||+||++++            ++|
T Consensus        62 F~aG~Dl~~~~~~~~~~~~~~~~~-~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~------------a~f  128 (258)
T 2pbp_A           62 FAAGADIQEMAKDDPIRLEWLNQF-ADWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSA------------AEF  128 (258)
T ss_dssp             EECCCCHHHHHTCCHHHHHHHCTT-HHHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEETT------------CEE
T ss_pred             ccCCcCHHHHhcccchhHHHHHHH-HHHHHHHhCCCCEEEEEcCEEEhHHHHHHHhCCEEEEcCC------------CEE
Confidence            899999998754221  1    23 6788899999999999999999999999999999999999            999


Q ss_pred             ecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHH
Q psy5402          76 HTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFA  155 (198)
Q Consensus        76 ~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~  155 (198)
                      ++||+++|++|++|++++|++++|..+|++++++|+.++|+||+++||||+|+|++++.+++.+++++++..||.+++.+
T Consensus       129 ~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~  208 (258)
T 2pbp_A          129 GFPEVNLGVMPGAGGTQRLTKLIGPKRALEWLWTGARMSAKEAEQLGIVNRVVSPELLMEETMRLAGRLAEQPPLALRLI  208 (258)
T ss_dssp             ECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             ECcccccCCCCcccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         156 KQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       156 K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      |+.++.....++++.++.|.+.+..++.++|++|++++|++||
T Consensus       209 K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr  251 (258)
T 2pbp_A          209 KEAVQKAVDYPLYEGMQFERKNFYLLFASEDQKEGMAAFLEKR  251 (258)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTS
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Confidence            9999998888899999999999999999999999999999987

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}

Probab=100.00  E-value=2e-45  Score=308.57  Aligned_cols=182  Identities=20%  Similarity=0.197  Sum_probs=170.3

Q ss_pred             CCCccCchhhhhhh------------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeec-CCcccCCCc
Q psy5402           2 TNNPTDLINEDTDT------------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASD-TAILLNHPV   68 (198)
Q Consensus         2 ~s~G~Dl~~~~~~~------------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~-~~~~~~~~~   68 (198)
                      ||+|.|++++....            ...+++++.+|.++||||||+|||+|+|||++|+++||+||+++ +        
T Consensus        66 FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~--------  137 (287)
T 3gkb_A           66 FLAHVDMRIGEKMDALQELAASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAET--------  137 (287)
T ss_dssp             EECCBCTTGGGSHHHHHHHHHTSCTTCCTTHHHHHHHHHCSSEEEEEECSEEETHHHHHHHHSSEEEEETTT--------
T ss_pred             eeCCcCHHHHhhccccchhhHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEeCCC--------
Confidence            89999999885322            12456789999999999999999999999999999999999999 8        


Q ss_pred             ccceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCC
Q psy5402          69 FVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLP  148 (198)
Q Consensus        69 ~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~  148 (198)
                          ++|++||+++|++|++|++++|++++|..+|+++++||++++|+||+++||||+|+|++++.+++.+++++|++.|
T Consensus       138 ----a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~  213 (287)
T 3gkb_A          138 ----AGLGQIEALMGIIPGGGGTQYLRGRVGRNRALEVVLTADLFDAETAASYGWINRALPADELDEYVDRVARNIAALP  213 (287)
T ss_dssp             ----CEEECGGGGGTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSC
T ss_pred             ----cEEECcccccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCcEEeChhHHHHHHHHHHHHHHcCC
Confidence                9999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         149 PQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       149 ~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      |.+++.+|+.++...   +.+.++.|...+..++.++|++|++++|++||
T Consensus       214 p~a~~~~K~~l~~~~---~~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekr  260 (287)
T 3gkb_A          214 DGVIEAAKRSLPADD---LKEGLLGENDAWAATFSLPAAQQLISGGLKDG  260 (287)
T ss_dssp             TTHHHHHHHHSCCCC---CHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHccC---HHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC
Confidence            999999999999852   35788899999999999999999999999996

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=1e-45  Score=307.20  Aligned_cols=185  Identities=22%  Similarity=0.242  Sum_probs=173.7

Q ss_pred             CCCccCchhhhhhhH-------HHHHHHHHHH-hcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceE
Q psy5402           2 TNNPTDLINEDTDTS-------ITLQKYVAAF-IDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA   73 (198)
Q Consensus         2 ~s~G~Dl~~~~~~~~-------~~~~~~~~~i-~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a   73 (198)
                      ||+|.|++++.....       ..+.+++.++ .++||||||+|||+|+|||++|+++||+||++++            +
T Consensus        66 F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~------------a  133 (265)
T 3swx_A           66 FTAGLDLASVAAEIQGGASLTPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADET------------A  133 (265)
T ss_dssp             SBCCBCHHHHHHHHC--CCCCCTTCCCTTCCSSCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETT------------C
T ss_pred             cccCcChHHHhhcccchhHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeehHHHHHHHHCCEEEEcCC------------C
Confidence            899999999865322       1223456777 8999999999999999999999999999999999            9


Q ss_pred             EEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHH
Q psy5402          74 TFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMI  153 (198)
Q Consensus        74 ~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~  153 (198)
                      +|++||+++|++|++|++++|++++|..+|++++++|+.++|+||+++||||+|+|++++.+++.+++++++..||.+++
T Consensus       134 ~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~  213 (265)
T 3swx_A          134 TFAQLEVNRGIYPFGGATIRFPRTAGWGNAMRWMLTADTFDAVEAHRIGIVQEIVPVGEHVDTAIAIAQTIARQAPLGVQ  213 (265)
T ss_dssp             EEECGGGGGTSCCCSSHHHHHHHHHCHHHHHHHHTTCCCEEHHHHHHTTSCSEEESTTCHHHHHHHHHHHHHHSCHHHHH
T ss_pred             EEECcccccccCCCccHHHHHHHHhhHHHHHHHHHcCCcCCHHHHHHcCCCCEecChhHHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         154 FAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       154 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      .+|+.++.....++++.++.|...+..++.++|++|++++|++||
T Consensus       214 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr  258 (265)
T 3swx_A          214 ATLRNARLAVREGDAAAEEQLVPTVRELFTSEDATLGVQAFLSRT  258 (265)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCC
Confidence            999999998888999999999999999999999999999999997

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=100.00  E-value=3.4e-45  Score=301.52  Aligned_cols=185  Identities=19%  Similarity=0.270  Sum_probs=154.9

Q ss_pred             CCCCccCchhhhhhh--------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccce
Q psy5402           1 MTNNPTDLINEDTDT--------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQ   72 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~--------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~   72 (198)
                      .||+|.|++++....        ...+++++.++.++||||||+|||+|+|||++|+++||+||++++            
T Consensus        57 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~------------  124 (250)
T 2a7k_A           57 SFSAGGDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMAST------------  124 (250)
T ss_dssp             CSBCBSCHHHHHTC-CHHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETT------------
T ss_pred             CccCCcCHHHHhhcCchhhHHHHHHHHHHHHHHHHcCCCCEEEEECCeEeHHHHHHHHhCCEEEEcCC------------
Confidence            489999999875321        123567889999999999999999999999999999999999999            


Q ss_pred             EEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHH
Q psy5402          73 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSM  152 (198)
Q Consensus        73 a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~  152 (198)
                      ++|++||+++|++|++|++ ++++++|..+|++++++|++++|+||+++||||+|+|++++.+.+.+++++++..||.++
T Consensus       125 a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~  203 (250)
T 2a7k_A          125 ANFVMPELKHGIGCSVGAA-ILGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASYPASAF  203 (250)
T ss_dssp             CEEECCGGGGTCCCHHHHH-HHHHHHCHHHHHHHHHHCCCBCHHHHHHHTCCSEEECHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             CEEeCcccccCCCCCcHHH-HHHHHhHHHHHHHHHHcCCcccHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999999 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         153 IFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       153 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +.+|+.++.....++++.++.|.+.+..++.++|++|++++|++||
T Consensus       204 ~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr  249 (250)
T 2a7k_A          204 INTKRAVNKPFIHLLEQTRDASKAVHKAAFQARDAQGHFKNVLGKK  249 (250)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCC-------------------
T ss_pred             HHHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC
Confidence            9999999998777888999999999999999999999999999987

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=100.00  E-value=5.7e-45  Score=304.33  Aligned_cols=184  Identities=19%  Similarity=0.294  Sum_probs=173.7

Q ss_pred             CCCCccCchhhhhhh---------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccc
Q psy5402           1 MTNNPTDLINEDTDT---------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVL   71 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~---------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~   71 (198)
                      .||+|.|++++....         ...+++++.++.++||||||+|||+|+|||++|+++||+||++++           
T Consensus        84 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~-----------  152 (276)
T 3rrv_A           84 AFSAGGDFGYLKELSADADLRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAEN-----------  152 (276)
T ss_dssp             CSBCCBCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETT-----------
T ss_pred             cccCCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHHCCEEEEeCC-----------
Confidence            489999999875421         224567889999999999999999999999999999999999999           


Q ss_pred             eEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHH
Q psy5402          72 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQS  151 (198)
Q Consensus        72 ~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a  151 (198)
                       ++|++||+++|++|++|++++|++++|..+|++++++|+.++|+||+++||||+|+  +++.+++.+++++++..||.+
T Consensus       153 -a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLv~~vv--~~l~~~a~~~A~~la~~~~~a  229 (276)
T 3rrv_A          153 -AYLADPHVQVGLVAADGGPLTWPLHISLLLAKEYALTGTRISAQRAVELGLANHVA--DDPVAEAIACAKKILELPQQA  229 (276)
T ss_dssp             -CEEECCHHHHTCCCCSSHHHHGGGTSCHHHHHHHHHHCCCEEHHHHHHHTSCSEEE--SSHHHHHHHHHHHHHHSCHHH
T ss_pred             -CEEECchhccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCHHHHH--HHHHHHHHHHHHHHHcCCHHH
Confidence             99999999999999999999999999999999999999999999999999999999  889999999999999999999


Q ss_pred             HHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         152 MIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       152 ~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      ++.+|+.++.....++++.++.|...+..++.++|++|++.+|++||
T Consensus       230 ~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR  276 (276)
T 3rrv_A          230 VESTKRVLNIHLERAVLASLDYALSAESQSFVTEDFRSIVTKLADKN  276 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence            99999999998888899999999999999999999999999999998

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=100.00  E-value=6.4e-45  Score=301.58  Aligned_cols=185  Identities=16%  Similarity=0.194  Sum_probs=169.1

Q ss_pred             CCCccCchhhhhhh-------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEee--cCCcccCCCcccce
Q psy5402           2 TNNPTDLINEDTDT-------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFAS--DTAILLNHPVFVLQ   72 (198)
Q Consensus         2 ~s~G~Dl~~~~~~~-------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~--~~~~~~~~~~~~~~   72 (198)
                      ||+|.|++++....       ...+++++.+|.++||||||+|||+|+|||++|+++||+||++  ++            
T Consensus        62 F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~~~------------  129 (260)
T 1sg4_A           62 FSAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPR------------  129 (260)
T ss_dssp             SCCEECGGGGSSCCHHHHHHHHHHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTT------------
T ss_pred             eEcCcCHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEEecCCC------------
Confidence            89999999874321       2345678899999999999999999999999999999999999  88            


Q ss_pred             EEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHH
Q psy5402          73 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSM  152 (198)
Q Consensus        73 a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~  152 (198)
                      ++|++||+++|++|++|++++|++++|..+|++++++|+.++|+||+++||||+|+|++++.+++.+++++++..||.++
T Consensus       130 a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~  209 (260)
T 1sg4_A          130 YCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAIPDHAR  209 (260)
T ss_dssp             CCBSCCGGGGTCCCCHHHHHHHHHHHCHHHHHHHHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHH
T ss_pred             CEEeCchhhhCCCCchhHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCCCEecCHHHHHHHHHHHHHHHHhCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         153 IFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       153 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +.+|+.++.....++++.++.|.+.+..++.++|++|++++|++||
T Consensus       210 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr  255 (260)
T 1sg4_A          210 QLTKAMMRKATASRLVTQRDADVQNFVSFISKDSIQKSLQMYLERL  255 (260)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSHHHHHHHTC-----
T ss_pred             HHHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence            9999999988777788888999999999999999999999999986

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=7.8e-45  Score=299.85  Aligned_cols=185  Identities=25%  Similarity=0.301  Sum_probs=173.7

Q ss_pred             CCCCccCchhhhhh---hH----H--H-HHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCccc
Q psy5402           1 MTNNPTDLINEDTD---TS----I--T-LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFV   70 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~---~~----~--~-~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~   70 (198)
                      .||+|.|++++...   ..    .  . +++++.++.++||||||+|||+|+|||++|+++||+||++++          
T Consensus        55 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~----------  124 (253)
T 1uiy_A           55 AFSAGADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEE----------  124 (253)
T ss_dssp             CSBCCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETT----------
T ss_pred             CcccCcChHHHHhcccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEcCC----------
Confidence            48999999987543   11    1  2 667888999999999999999999999999999999999999          


Q ss_pred             ceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHH
Q psy5402          71 LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQ  150 (198)
Q Consensus        71 ~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~  150 (198)
                        ++|++||+++|++|++| +++|++++|..+|++++++|+.++|+||+++||||+|+|++++.+++.+++++++..||.
T Consensus       125 --a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~  201 (253)
T 1uiy_A          125 --ARLGYTEVKIGFVAALV-SVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKNAPT  201 (253)
T ss_dssp             --CEEECCHHHHTCCCHHH-HHHHHHHSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHHHSCHH
T ss_pred             --cEEeCcccccCcCCchH-HHHHHHHhCHHHHHHHHHhCCccCHHHHHHCCCcceecChhHHHHHHHHHHHHHHcCCHH
Confidence              99999999999999999 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         151 SMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       151 a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +++.+|+.++.....++++.++.|.+.+..++.++|++|++++|++||
T Consensus       202 a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~~kr  249 (253)
T 1uiy_A          202 SLRLTKELLLALPGMGLEDGFRLAALANAWVRETGDLAEGIRAFFEKR  249 (253)
T ss_dssp             HHHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCcC
Confidence            999999999998888899999999999999999999999999999987

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=1.3e-44  Score=300.37  Aligned_cols=184  Identities=15%  Similarity=0.168  Sum_probs=172.1

Q ss_pred             CCCCccCchhhhhh---h-------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCccc
Q psy5402           1 MTNNPTDLINEDTD---T-------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFV   70 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~---~-------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~   70 (198)
                      .||+|.|++ +...   .       ...+++++.+|.++||||||+|||+|+|||++|+++||+||++++          
T Consensus        66 ~F~aG~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~----------  134 (264)
T 1wz8_A           66 VFSAGGSFG-LIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKG----------  134 (264)
T ss_dssp             CCBCCBCHH-HHHHHHHCHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETT----------
T ss_pred             CCcccCccc-cccccccchHHHHHHHHHHHHHHHHHHcCCCCEEEEECCeeechhHHHHHhCCEEEecCC----------
Confidence            489999998 6432   1       124567888999999999999999999999999999999999999          


Q ss_pred             ceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHH
Q psy5402          71 LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQ  150 (198)
Q Consensus        71 ~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~  150 (198)
                        ++|++||+++|++|++|++++|++++|..+|++++++|++++|+||+++||||+|+|++++.+++.+++++++..||.
T Consensus       135 --a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~  212 (264)
T 1wz8_A          135 --TRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERLAQGPKE  212 (264)
T ss_dssp             --CEEECCHHHHTSCCTTTHHHHTHHHHCHHHHHHHHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHH
T ss_pred             --CEEeCchhhcCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCceeecChhHHHHHHHHHHHHHHhCCHH
Confidence              999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         151 SMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       151 a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +++.+|+.++..... +++.++.|.+.+..++.++|++|++++|++||
T Consensus       213 a~~~~K~~l~~~~~~-~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr  259 (264)
T 1wz8_A          213 ALHHTKHALNHWYRS-FLPHFELSLALEFLGFSGKELEEGLKALKEKR  259 (264)
T ss_dssp             HHHHHHHHHHHHHHT-THHHHHHHHHHHHHGGGSHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcChHHHHHHHHHHccC
Confidence            999999999988777 88889999999999999999999999999987

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=100.00  E-value=9e-45  Score=302.81  Aligned_cols=185  Identities=23%  Similarity=0.331  Sum_probs=173.2

Q ss_pred             CCCCccCchhhhhh-------h-----------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCc
Q psy5402           1 MTNNPTDLINEDTD-------T-----------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAI   62 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~-------~-----------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~   62 (198)
                      .||+|+|++++...       .           ...+++++.+|.++||||||+|||+|+|||++|+++||+||++++  
T Consensus        60 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~--  137 (275)
T 1dci_A           60 MFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQD--  137 (275)
T ss_dssp             CSBCCBCHHHHHHHHTSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETT--
T ss_pred             CccCCcChHHHhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEeCC--
Confidence            48999999987532       0           123566788899999999999999999999999999999999999  


Q ss_pred             ccCCCcccceEEEecccccccccCCchhhhHHHHHhcH-HHHHHHHhcCCCCCHHHHHhcCCcccccCc-hhHHHHHHHH
Q psy5402          63 LLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGN-SVASELLYTGRKLNAQEALQYGFVSGVFTT-EEIERDLWPR  140 (198)
Q Consensus        63 ~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~-~~a~~lll~g~~~~a~eA~~~Glv~~v~~~-~~l~~~a~~~  140 (198)
                                ++|++||+++|++|++|++++|++++|. .+|++++++|+.++|+||+++||||+|+|+ +++.+++.++
T Consensus       138 ----------a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~  207 (275)
T 1dci_A          138 ----------AFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFAL  207 (275)
T ss_dssp             ----------CEEECCGGGGTSCCCSSHHHHGGGTCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHHHH
T ss_pred             ----------CEEeCcccccCCCCCccHHHHHHHHhCcHHHHHHHHHcCCCCCHHHHHHcCCcceecCChHHHHHHHHHH
Confidence                      9999999999999999999999999999 999999999999999999999999999999 9999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc
Q psy5402         141 IHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNR  197 (198)
Q Consensus       141 a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~k  197 (198)
                      +++++..||.+++.+|+.++.....++++.++.|...+..++.++|++|++++|++|
T Consensus       208 a~~la~~~p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ek  264 (275)
T 1dci_A          208 AADISSKSPVAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEK  264 (275)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSHHHHHHHHHHHTT
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence            999999999999999999999888889999999999999999999999999999998

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=100.00  E-value=1.5e-44  Score=303.19  Aligned_cols=185  Identities=19%  Similarity=0.274  Sum_probs=174.8

Q ss_pred             CCCCccCchhhhhh--------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccce
Q psy5402           1 MTNNPTDLINEDTD--------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQ   72 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~--------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~   72 (198)
                      .||+|.|++++...        ....+++++.+|.++||||||+|||+|+|||++|+++||+||++++            
T Consensus        82 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~------------  149 (286)
T 3myb_A           82 AFCAGHDLKEMRAEPSREYYEKLFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRD------------  149 (286)
T ss_dssp             CSBCCBCHHHHHSSCCHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSCEETHHHHHHHHSSEEEEETT------------
T ss_pred             CccCCcChhhhhccccHHHHHHHHHHHHHHHHHHHcCCCCEEEEECCeehHHHHHHHHhCCEEEEcCC------------
Confidence            48999999998542        1235677889999999999999999999999999999999999999            


Q ss_pred             EEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHH
Q psy5402          73 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSM  152 (198)
Q Consensus        73 a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~  152 (198)
                      ++|++||+++|++ ++|++++|++++|..+|++++++|+.++|+||+++||||+|+|++++.+++.+++++++..||.++
T Consensus       150 a~f~~pe~~lGl~-~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~  228 (286)
T 3myb_A          150 ARFAVSGINVGLF-CSTPGVALSRNVGRKAAFEMLVTGEFVSADDAKGLGLVNRVVAPKALDDEIEAMVSKIVAKPRAAV  228 (286)
T ss_dssp             CEEECGGGGGTCC-CHHHHHHHTTTSCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHHSCHHHH
T ss_pred             CEEECcccccCCC-CchHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCCcEecCHHHHHHHHHHHHHHHHhCCHHHH
Confidence            9999999999999 778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         153 IFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       153 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +.+|+.++.....++++.++.|...+..++.++|++|++++|++||
T Consensus       229 ~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~aFlekr  274 (286)
T 3myb_A          229 AMGKALFYRQIETDIESAYADAGTTMACNMMDPSALEGVSAFLEKR  274 (286)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Confidence            9999999998888999999999999999999999999999999997

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=100.00  E-value=1.6e-44  Score=300.97  Aligned_cols=185  Identities=17%  Similarity=0.198  Sum_probs=164.4

Q ss_pred             CCCCccCchhhhhhh---------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccc
Q psy5402           1 MTNNPTDLINEDTDT---------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVL   71 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~---------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~   71 (198)
                      .||+|.|++++....         ...+++++.++.++||||||+|||+|+|||++|+++||+||++++           
T Consensus        69 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-----------  137 (272)
T 3qk8_A           69 AFSSGGSFELIDETIGDYEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASAT-----------  137 (272)
T ss_dssp             CSBCEECHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEEHHHHHHHHHSSEEEEETT-----------
T ss_pred             CeeCCcCHHHHhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCC-----------
Confidence            489999999885321         234567889999999999999999999999999999999999999           


Q ss_pred             eEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHH
Q psy5402          72 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQS  151 (198)
Q Consensus        72 ~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a  151 (198)
                       ++|++||+++|++|++|++++|++++|..+|++++++|+.++|+||+++||||+|+|++++.+++.+++++|+..||.+
T Consensus       138 -a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a  216 (272)
T 3qk8_A          138 -AKIIDGHTKLGVAAGDHAAICWPLLVGMAKAKYYLLTCETLSGEEAERIGLVSTCVDDDEVLPTATRLAENLAQGAQNA  216 (272)
T ss_dssp             -CEEECCHHHHTSCSCSSHHHHTHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHH
T ss_pred             -CEEECchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCcEeeCHhHHHHHHHHHHHHHHcCCHHH
Confidence             9999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         152 MIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       152 ~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      ++.+|+.++..... ....++.+......++.++|++|++++|++||
T Consensus       217 ~~~~K~~l~~~~~~-~~~~~~~~~~~e~~~~~s~d~~eg~~Af~ekR  262 (272)
T 3qk8_A          217 IRWTKRSLNHWYRM-FGPTFETSLGLEFLGFTGPDVQEGLAAHRQKR  262 (272)
T ss_dssp             HHHHHHHHHHHHHH-THHHHHHHHHHHHHHTTSSHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHhh-cchhHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence            99999999876441 12223333333357899999999999999997

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=100.00  E-value=1.9e-44  Score=302.72  Aligned_cols=184  Identities=26%  Similarity=0.313  Sum_probs=172.5

Q ss_pred             CCCccCchhhhhhh--------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceE
Q psy5402           2 TNNPTDLINEDTDT--------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA   73 (198)
Q Consensus         2 ~s~G~Dl~~~~~~~--------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a   73 (198)
                      ||+|.|++++....        ...+++++.+|.++||||||+|||+|+|||++|+++||+||++++            +
T Consensus        90 FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~------------a  157 (287)
T 2vx2_A           90 FSSGHDLKELTEEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDK------------S  157 (287)
T ss_dssp             EECCSCCC-CCGGGCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETT------------C
T ss_pred             ccCCcCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEcCC------------C
Confidence            89999998874321        134567888999999999999999999999999999999999999            9


Q ss_pred             EEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHH
Q psy5402          74 TFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMI  153 (198)
Q Consensus        74 ~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~  153 (198)
                      +|++||+++|++|++|+++ |++++|..+|++++++|+.++|+||+++||||+|||++++.+.+.+++++|+..||.+++
T Consensus       158 ~f~~pe~~lGl~p~~g~~~-L~r~vG~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~  236 (287)
T 2vx2_A          158 SFATPGVNVGLFCSTPGVA-LARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKIASLSRPVVS  236 (287)
T ss_dssp             EEECCGGGGTCCCHHHHHH-HHTTSCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH
T ss_pred             EEECchhhhCCCCchHHHH-HHHHhhHHHHHHHHHhCCCCCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999999999 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         154 FAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       154 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      .+|+.++.....++++.++.|...+..++.++|++|++++|++||
T Consensus       237 ~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~af~ekr  281 (287)
T 2vx2_A          237 LGKATFYKQLPQDLGTAYYLTSQAMVDNLALRDGQEGITAFLQKR  281 (287)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence            999999988888899999999999999999999999999999987

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=100.00  E-value=8.3e-45  Score=300.91  Aligned_cols=185  Identities=26%  Similarity=0.364  Sum_probs=171.5

Q ss_pred             CCCccCchhhhhhhH-----HHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEe
Q psy5402           2 TNNPTDLINEDTDTS-----ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFH   76 (198)
Q Consensus         2 ~s~G~Dl~~~~~~~~-----~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~   76 (198)
                      ||+|.|++++.....     ..+.+.+.++.++||||||+|||+|+|||++|+++||+||++++            ++|+
T Consensus        64 F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~------------a~f~  131 (260)
T 1mj3_A           64 FAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEK------------AQFG  131 (260)
T ss_dssp             EECCBCHHHHTTCCHHHHHHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETT------------CEEE
T ss_pred             ccCCcChHhhhcccchHHHHHHHHHHHHHHHhCCCCEEEEECCEEEeHHHHHHHhCCEEEEcCC------------CEEe
Confidence            899999998753221     11223467788999999999999999999999999999999999            9999


Q ss_pred             cccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q psy5402          77 TPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAK  156 (198)
Q Consensus        77 ~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~K  156 (198)
                      +||+++|++|++|++++|++++|..+|++++++|++++|+||+++||||+|+|++++.+++.+++++++..||.+++.+|
T Consensus       132 ~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  211 (260)
T 1mj3_A          132 QPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVAMAK  211 (260)
T ss_dssp             CGGGGGTCCCCSSTTTHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             CcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEEeChHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         157 QLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       157 ~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +.++.....++++.++.|...+..++.++|++|++++|++||
T Consensus       212 ~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~~kr  253 (260)
T 1mj3_A          212 ESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKR  253 (260)
T ss_dssp             HHHHGGGSSCHHHHHHHHHHHHHHGGGSHHHHHHHHHHHTTS
T ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCC
Confidence            999998888899999999999999999999999999999987

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=100.00  E-value=1.3e-44  Score=300.39  Aligned_cols=185  Identities=23%  Similarity=0.237  Sum_probs=168.2

Q ss_pred             CCCCccCchhhhhhhH-----HHHHH-HHHHH-h--cCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccc
Q psy5402           1 MTNNPTDLINEDTDTS-----ITLQK-YVAAF-I--DYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVL   71 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~~-----~~~~~-~~~~i-~--~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~   71 (198)
                      .||+|.|++ ......     ..+++ ++.++ .  ++||||||+|||+|+|||++|+++||+||++++           
T Consensus        65 ~F~aG~Dl~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-----------  132 (265)
T 3rsi_A           65 AYCVGGDLS-DGWMVRDGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEH-----------  132 (265)
T ss_dssp             CSEECC---------------CCCHHHHHHHTTSSCCCSSCEEEEECSCEETHHHHHHTTCSEEEEETT-----------
T ss_pred             CcccCcCCC-cccccchHHHHHHhHHHHHHHHHHhcCCCCCEEEEECCeeeHHHHHHHHHCCEEEecCC-----------
Confidence            489999998 221111     11245 78888 8  999999999999999999999999999999999           


Q ss_pred             eEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHH
Q psy5402          72 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQS  151 (198)
Q Consensus        72 ~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a  151 (198)
                       ++|++||+++|++|++|++++|++++|..+|++++++|++++|+||+++||||+|+|++++.+++.+++++|+..||.+
T Consensus       133 -a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a  211 (265)
T 3rsi_A          133 -ATFGLPEVQRGLVPGAGSMVRLKRQIPYTKAMEMILTGEPLTAFEAYHFGLVGHVVPAGTALDKARSLADRIVRNGPLA  211 (265)
T ss_dssp             -CEEECGGGGGTCCCTTTHHHHHHHHSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEESTTCHHHHHHHHHHHHHTSCHHH
T ss_pred             -CEEECchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEecChhHHHHHHHHHHHHHHhCCHHH
Confidence             9999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         152 MIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       152 ~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      ++.+|+.++.....++++.++.|...+..++.++|++|++++|++||
T Consensus       212 ~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr  258 (265)
T 3rsi_A          212 VRNAKEAIVRSGWLAEEDARAIEARLTRPVITSADAREGLAAFKEKR  258 (265)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCC
Confidence            99999999998888999999999999999999999999999999997

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=100.00  E-value=2.9e-45  Score=306.30  Aligned_cols=186  Identities=25%  Similarity=0.235  Sum_probs=163.1

Q ss_pred             CCCCccCchhhhhhhHH-------HHHHHHHHHh---cCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCccc
Q psy5402           1 MTNNPTDLINEDTDTSI-------TLQKYVAAFI---DYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFV   70 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~~~-------~~~~~~~~i~---~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~   70 (198)
                      .||+|.|++++......       .+++++..+.   ++||||||+|||+|+|||++|+++||+||++++          
T Consensus        76 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~----------  145 (278)
T 4f47_A           76 YFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAES----------  145 (278)
T ss_dssp             CCC----------------------CTTCBTTTTBSCCCSSCEEEEECSEEETHHHHHHTTCSEEEEETT----------
T ss_pred             cccCCcChHhhhccchhhhHHHHHHHHHHHHHHHHhcCCCCCEEEEECCEEehHHHHHHHhCCEEEEcCC----------
Confidence            48999999988643221       1233455666   899999999999999999999999999999999          


Q ss_pred             ceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHH
Q psy5402          71 LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQ  150 (198)
Q Consensus        71 ~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~  150 (198)
                        ++|++||+++|++|++|++++|++++|..+|++++++|+.++|+||+++||||+|+|++++.+++.+++++++..||.
T Consensus       146 --a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~  223 (278)
T 4f47_A          146 --AKFGISEAKWSLYPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEMGLVGHVVPDGQALTKALEIAEIIAANGPL  223 (278)
T ss_dssp             --CEEECCGGGGTCCCTTSHHHHHHHHSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHH
T ss_pred             --CEEECcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCceEeeChhHHHHHHHHHHHHHHhCCHH
Confidence              999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         151 SMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       151 a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +++.+|+.++.....++++.++.|...+..++.++|++|++++|++||
T Consensus       224 a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~Af~ekr  271 (278)
T 4f47_A          224 AVQAILRTIRETEGMHENEAFKIDTRIGIEVFLSDDAKEGPQAFAQKR  271 (278)
T ss_dssp             HHHHHHHHHHHTTTSCHHHHHHHHHHHHGGGGGSSHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCC
Confidence            999999999998888899999999999999999999999999999997

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=100.00  E-value=8.6e-46  Score=307.63  Aligned_cols=184  Identities=23%  Similarity=0.324  Sum_probs=173.0

Q ss_pred             CCCccCchhhhhhhH-------HHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEE
Q psy5402           2 TNNPTDLINEDTDTS-------ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQAT   74 (198)
Q Consensus         2 ~s~G~Dl~~~~~~~~-------~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~   74 (198)
                      ||+|.|++++.....       .. ++++.++.++||||||+|||+|+|||++|+++||+||++++            ++
T Consensus        64 F~aG~Dl~~~~~~~~~~~~~~~~~-~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~------------a~  130 (265)
T 3qxz_A           64 FCSGAQISAAAETFAAPRNPDFSA-SPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEE------------GR  130 (265)
T ss_dssp             EECCBCSTTCTTCCCCCCSSCCCS-CCSSSCGGGSSSCEEEEECSEEETHHHHHHTTSSEEEEETT------------CC
T ss_pred             cccCcChHHHhhccchhHHHHHHH-HHHHHHHHhCCCCEEEEECCEEehHhHHHHHHCCEEEEcCC------------CE
Confidence            899999998754321       12 56778899999999999999999999999999999999999            99


Q ss_pred             EecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcC-CHHHHH
Q psy5402          75 FHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL-PPQSMI  153 (198)
Q Consensus        75 ~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~-~~~a~~  153 (198)
                      |++||+++|++|++|++++|++++|..+|++++++|+.++|+||+++||||+|+|++++.+++.+++++++.. ||.+++
T Consensus       131 f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~p~a~~  210 (265)
T 3qxz_A          131 YAIPQVRFGVAPDALAHWTLPRLVGTAVAAELLLTGASFSAQRAVETGLANRCLPAGKVLGAALRMAHDIATNVAPESAA  210 (265)
T ss_dssp             EECCGGGGTSCCCTTHHHHTHHHHHHHHHHHHHHHCCCBCHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             EECcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHccCCHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999 999999


Q ss_pred             HHHHHhhchhhhcHHHH--HHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         154 FAKQLVRVPMLSMLHEA--NKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       154 ~~K~~l~~~~~~~~~~~--~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      .+|+.++.....++++.  ++.|...+..++.++|++|++++|++||
T Consensus       211 ~~K~~l~~~~~~~l~~~~~l~~e~~~~~~~~~s~d~~egi~Af~ekr  257 (265)
T 3qxz_A          211 LTKRLLWDAQMTGMSAAEVAARETADHLRLMGSQDAAEGPRAFIDGR  257 (265)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSTHHHHHHHHHHHTS
T ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHcCC
Confidence            99999999888888888  8999999999999999999999999997

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=100.00  E-value=2e-44  Score=300.90  Aligned_cols=184  Identities=22%  Similarity=0.233  Sum_probs=163.7

Q ss_pred             CCCccCchhhhhhhH--------HHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceE
Q psy5402           2 TNNPTDLINEDTDTS--------ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA   73 (198)
Q Consensus         2 ~s~G~Dl~~~~~~~~--------~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a   73 (198)
                      ||+|.|++++.....        ..+++++.++.++||||||+|||+|+|||++|+++||+||++++            +
T Consensus        73 F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~------------a  140 (275)
T 4eml_A           73 FCSGGDQSVRGEGGYIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADN------------A  140 (275)
T ss_dssp             EECCBCCC--------------CCCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETT------------C
T ss_pred             eeCCcChhhhhcccccchhhHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCC------------C
Confidence            899999998854211        12567889999999999999999999999999999999999999            9


Q ss_pred             EEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHH
Q psy5402          74 TFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMI  153 (198)
Q Consensus        74 ~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~  153 (198)
                      +|++||+++|++|+++++++|++++|..+|++++++|+.++|+||+++||||+|+|++++.+++.+++++|++.||.+++
T Consensus       141 ~f~~pe~~~Gl~p~~~g~~~L~r~vG~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~  220 (275)
T 4eml_A          141 IFGQTGPKVGSFDGGFGSSYLARIVGQKKAREIWYLCRQYSAQEAERMGMVNTVVPVDRLEEEGIQWAKEILSKSPLAIR  220 (275)
T ss_dssp             EEECCHHHHTCCCCSTTTHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH
T ss_pred             EEECcccccCCCCCccHHHHHHHHhHHHHHHHHHHhCCCcCHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            99999999999998888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         154 FAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       154 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      .+|+.++..... .....+.|.+.+..++.++|++|++.+|++||
T Consensus       221 ~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~eg~~AF~ekR  264 (275)
T 4eml_A          221 CLKAAFNADCDG-QAGLQELAGNATLLYYMTEEGSEGKQAFLEKR  264 (275)
T ss_dssp             HHHHHHHHTTSH-HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTS
T ss_pred             HHHHHHHhhhcc-chhHHHHHHHHHHHHhcCHHHHHHHHHHHcCC
Confidence            999999987542 33444567777888999999999999999997

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=100.00  E-value=5.2e-45  Score=302.20  Aligned_cols=185  Identities=21%  Similarity=0.296  Sum_probs=172.2

Q ss_pred             CCCccCchhhhhhh------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEE
Q psy5402           2 TNNPTDLINEDTDT------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATF   75 (198)
Q Consensus         2 ~s~G~Dl~~~~~~~------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~   75 (198)
                      ||+|.|++++....      ...+++++.+|.++||||||+|||+|+|||++|+++||+||++++            ++|
T Consensus        62 F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~------------a~f  129 (261)
T 1ef8_A           62 FSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAAST------------STF  129 (261)
T ss_dssp             EECCSCSTTC-----CTTCTTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETT------------CEE
T ss_pred             eecCcChHhhhccCchhHHHHHHHHHHHHHHHhCCCCEEEEECCEEEeHhHHHHHhCCEEEecCC------------CEE
Confidence            89999999875321      124678899999999999999999999999999999999999999            999


Q ss_pred             ecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHH
Q psy5402          76 HTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFA  155 (198)
Q Consensus        76 ~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~  155 (198)
                      ++||+++|++|++|+++++++++|..+|++++++|+.++|+||+++||||+|+|++++.+.+.+++++++..||.+++.+
T Consensus       130 ~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~  209 (261)
T 1ef8_A          130 SMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVI  209 (261)
T ss_dssp             ECCHHHHTCCCCHHHHHTTSSSSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             eCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCcccccCHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhchhhhcHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHccC
Q psy5402         156 KQLVRVPMLSMLHEANKRECKRLE--ERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       156 K~~l~~~~~~~~~~~~~~e~~~~~--~~~~~~~~~e~~~af~~kr  198 (198)
                      |+.++.....++++.++.|.+.+.  .++.++|++|++++|++||
T Consensus       210 K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~d~~eg~~af~ekr  254 (261)
T 1ef8_A          210 KEELRVLGEAHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKR  254 (261)
T ss_dssp             HHHHHHHHHCCCCCHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTS
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHhhHHHhhcCHHHHHHHHHHHccC
Confidence            999998877777888889999898  9999999999999999987

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=100.00  E-value=3.8e-44  Score=297.90  Aligned_cols=182  Identities=19%  Similarity=0.312  Sum_probs=167.5

Q ss_pred             CCCccCchhhhh------------hhHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcc
Q psy5402           2 TNNPTDLINEDT------------DTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVF   69 (198)
Q Consensus         2 ~s~G~Dl~~~~~------------~~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~   69 (198)
                      ||+|.|++++..            .....+++++.++.++||||||+|||+|+|||++|+++||+||++++         
T Consensus        68 F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~---------  138 (267)
T 3oc7_A           68 FCAGADLSEAGSGGSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPR---------  138 (267)
T ss_dssp             EECCBC-----------CHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETTHHHHHHHSSEEEECTT---------
T ss_pred             eeCCcCchhhhhccCchhhhhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCeecccchHHHHHCCEEEEcCC---------
Confidence            899999998751            12345677889999999999999999999999999999999999999         


Q ss_pred             cceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCH
Q psy5402          70 VLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP  149 (198)
Q Consensus        70 ~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~  149 (198)
                         ++|++||+++|++|++|++++++ ++|..+|++++++|++++|+||+++||||+|  ++++.+++.++++++++.||
T Consensus       139 ---a~f~~pe~~~Gl~p~~g~~~~l~-~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~v--~~~l~~~a~~~a~~la~~~~  212 (267)
T 3oc7_A          139 ---SSFALTEARIGVAPAIISLTLLP-KLSARAAARYYLTGEKFDARRAEEIGLITMA--AEDLDAAIDQLVTDVGRGSP  212 (267)
T ss_dssp             ---CEEECCGGGGTCCCTTTHHHHTT-TSCHHHHHHHHHHCCCBCHHHHHHHTSSSEE--CSSHHHHHHHHHHHHHTSCH
T ss_pred             ---CEEeCcccccCCCcchhHHHHHH-HhCHHHHHHHHHcCCccCHHHHHHCCChhhh--hHHHHHHHHHHHHHHHhCCH
Confidence               99999999999999999999999 8999999999999999999999999999999  68899999999999999999


Q ss_pred             HHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         150 QSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       150 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      .+++.+|+.++.....++++.++.|...+..++.++|++|++++|++||
T Consensus       213 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr  261 (267)
T 3oc7_A          213 QGLAASKALTTAAVLERFDRDAERLAEESARLFVSDEAREGMLAFLEKR  261 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCC
Confidence            9999999999998888899999999999999999999999999999997

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0

Probab=100.00  E-value=3e-45  Score=305.60  Aligned_cols=185  Identities=22%  Similarity=0.268  Sum_probs=167.8

Q ss_pred             CCCCccCchhhhhhhH--------------HHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCC
Q psy5402           1 MTNNPTDLINEDTDTS--------------ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNH   66 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~~--------------~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~   66 (198)
                      .||+|.|++++.....              ..+++++.++.++||||||+|||+|+|||++|+++||+||++++      
T Consensus        67 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~------  140 (274)
T 3tlf_A           67 AFCSGADVKEIPEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQ------  140 (274)
T ss_dssp             EEECCBC--------------CTTCSGGGGSCCCTTCCCTTSCCSCEEEEECSEEEGGGHHHHHHSSEEEEETT------
T ss_pred             CcccCcCHHHHhhccccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCC------
Confidence            3899999998754322              12345677889999999999999999999999999999999999      


Q ss_pred             CcccceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCC--CCCHHHHHhcCCcccccCchhHHHHHHHHHHHH
Q psy5402          67 PVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGR--KLNAQEALQYGFVSGVFTTEEIERDLWPRIHAW  144 (198)
Q Consensus        67 ~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~--~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l  144 (198)
                            ++|++||+++|++| +|++++|++++|..+|++++++|+  .++|+||+++||||+|+|++++.+++.++++++
T Consensus       141 ------a~f~~pe~~~Gl~p-~g~~~~L~r~vG~~~A~~l~ltg~~~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~l  213 (274)
T 3tlf_A          141 ------ATFFDPHVSIGLVA-GRELVRVSRVLPRSIALRMALMGKHERMSAQRAYELGLISEIVEHDRLLERAHEIADIV  213 (274)
T ss_dssp             ------CEEECCGGGGTCCC-CHHHHHHTTTSCHHHHHHHHHHGGGCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHH
T ss_pred             ------CEEECcccccCccc-chHHHHHHHHhCHHHHHHHHHcCCCCccCHHHHHHCCCCCeecCHHHHHHHHHHHHHHH
Confidence                  99999999999999 999999999999999999999999  999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         145 AKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       145 a~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +..||.+++.+|+.++.....++++.++.|...+..++.++|++|++++|++||
T Consensus       214 a~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr  267 (274)
T 3tlf_A          214 NSNAPLAVRGTRLAILKGLNVPLHEAEILAETFRERVLRTEDAAEGPRAFVEKR  267 (274)
T ss_dssp             HTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTS
T ss_pred             HhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCC
Confidence            999999999999999998888899999999999999999999999999999997

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=100.00  E-value=4.8e-44  Score=298.25  Aligned_cols=183  Identities=24%  Similarity=0.291  Sum_probs=166.7

Q ss_pred             CCCccCchhhhhhh--------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceE
Q psy5402           2 TNNPTDLINEDTDT--------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA   73 (198)
Q Consensus         2 ~s~G~Dl~~~~~~~--------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a   73 (198)
                      ||+|.|++++....        ...+++++..+.++||||||+|||+|+|||++|+++||+||++++            +
T Consensus        71 FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~------------a  138 (273)
T 2uzf_A           71 FCSGGDQKKRGHGGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADN------------A  138 (273)
T ss_dssp             EECCCCCC--------CCSSSCCCTHHHHHHHHHHSSSCEEEEECEEEETHHHHHHHHSSEEEEETT------------C
T ss_pred             eecCcCcHhhhccccchhhhHHHhhHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEEcCC------------C
Confidence            89999999874311        012567888999999999999999999999999999999999999            9


Q ss_pred             EEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHH
Q psy5402          74 TFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMI  153 (198)
Q Consensus        74 ~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~  153 (198)
                      +|++||+++|++|++|++++|++++|..+|++++++|+.++|+||+++||||+|+|++++.+++.+++++++..||.+++
T Consensus       139 ~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~  218 (273)
T 2uzf_A          139 IFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPLEKVEDETVQWCKEIMKHSPTALR  218 (273)
T ss_dssp             EEECCGGGTTCCCCSTTTHHHHHHHCHHHHHHHHHTCCCEEHHHHHHHTSSSEEECGGGSHHHHHHHHHHHTTSCHHHHH
T ss_pred             EEECchhhhCCCCchhHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCccccCHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhchhhhcHHHHHHHHH-HHHHHHhCCHHHHHHHHHHHccC
Q psy5402         154 FAKQLVRVPMLSMLHEANKREC-KRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       154 ~~K~~l~~~~~~~~~~~~~~e~-~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      .+|+.++  ...++++.++.|. ..+..++.++|++|++++|++||
T Consensus       219 ~~K~~l~--~~~~~~~~l~~e~~~~~~~~~~s~d~~egi~af~ekr  262 (273)
T 2uzf_A          219 FLKAAMN--ADTDGLAGLQQMAGDATLLYYTTDEAKEGRDAFKEKR  262 (273)
T ss_dssp             HHHHHHH--HHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTS
T ss_pred             HHHHHHH--ccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcC
Confidence            9999999  3456788888888 88999999999999999999987

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}

Probab=100.00  E-value=1.2e-44  Score=299.48  Aligned_cols=183  Identities=22%  Similarity=0.259  Sum_probs=169.8

Q ss_pred             CCCCccCchhhhhhhHH----HHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEe
Q psy5402           1 MTNNPTDLINEDTDTSI----TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFH   76 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~~~----~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~   76 (198)
                      .||+|.|++++......    .+ . +..+ ++||||||+|||+|+|||++|+++||+||++++            ++|+
T Consensus        63 ~F~aG~Dl~~~~~~~~~~~~~~~-~-~~~~-~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~------------a~f~  127 (256)
T 3trr_A           63 NFCAGMDLKAFVSGEAVLSERGL-G-FTNV-PPRKPIIAAVEGFALAGGTELVLSCDLVVAGRS------------AKFG  127 (256)
T ss_dssp             CCCCCBCHHHHHHTCCCEETTEE-T-TSSS-CCSSCEEEEECSBCCTHHHHHHHTSSEEEEETT------------CEEC
T ss_pred             ceecCcCHHHhccccchhhhhhh-h-HHHh-cCCCCEEEEECCeeeechhHHHHhCCEEEECCC------------CEEE
Confidence            48999999987542210    11 1 2334 899999999999999999999999999999999            9999


Q ss_pred             cccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q psy5402          77 TPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAK  156 (198)
Q Consensus        77 ~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~K  156 (198)
                      +||+++|++|++|++++|++++|..+|++++++|+.++|+||+++||||+|+|++++.+++.+++++++..||.+++.+|
T Consensus       128 ~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K  207 (256)
T 3trr_A          128 IPEVKRGLVAGAGGLLRLPNRIPYQVAMELALTGESFTAEDAAKYGFINRLVDDGQALDTALELAAKITANGPLAVAATK  207 (256)
T ss_dssp             CCGGGGTCCCCSSHHHHHHHHSCHHHHHHHHHHCCCEEHHHHGGGTCCSEEECTTCHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             ehhhccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHCCCeeEecChHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         157 QLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       157 ~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +.++.....++++.++.|...+..++.++|++|++++|++||
T Consensus       208 ~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr  249 (256)
T 3trr_A          208 RIIIESASWAPEEAFAKQGEILMPIFVSEDAKEGAKAFAEKR  249 (256)
T ss_dssp             HHHHHGGGSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTS
T ss_pred             HHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCC
Confidence            999999888999999999999999999999999999999997

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A

Probab=100.00  E-value=2.5e-45  Score=304.43  Aligned_cols=184  Identities=21%  Similarity=0.223  Sum_probs=157.8

Q ss_pred             CCCCccCchhhhhhhHH-----HHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEE
Q psy5402           1 MTNNPTDLINEDTDTSI-----TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATF   75 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~~~-----~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~   75 (198)
                      .||+|.|++++......     ....++..+.++||||||+|||+|+|||++|+++||+||++++            ++|
T Consensus        67 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~------------a~f  134 (262)
T 3r9q_A           67 TFCAGADLKAMGTDRGNELHPHGPGPMGPSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEED------------AVL  134 (262)
T ss_dssp             CSBCCBCTTTTTSTTSCCCCTTSSCTTSSTTCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETT------------CEE
T ss_pred             CccCCcCHHHHhccChhhHHHhhhhHHHHHHHhCCCCEEEEECCeeehhhhHHHHhCCEEEEeCC------------CEE
Confidence            48999999998643221     1223445677999999999999999999999999999999999            999


Q ss_pred             ecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHH
Q psy5402          76 HTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFA  155 (198)
Q Consensus        76 ~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~  155 (198)
                      ++||+++|++|++|++++|++++|..+|++++++|+.++|+||+++||||+|+|++++.+++.+++++|++.||.+++.+
T Consensus       135 ~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~  214 (262)
T 3r9q_A          135 GVFCRRWGVPLIDGGTIRLPRLIGHSRAMDLILTGRPVHANEALDIGLVNRVVARGQAREAAETLAAEIAAFPQQCVRAD  214 (262)
T ss_dssp             ECTHHHHTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             ecchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEecChhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         156 KQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       156 K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      |+.++.....++++.++.|.. +..++.+ |++|++++|++||
T Consensus       215 K~~~~~~~~~~l~~~l~~e~~-~~~~~~s-d~~Eg~~AF~ekr  255 (262)
T 3r9q_A          215 RDSAIAQWGMAEEAALDNEFG-SIERVAT-EALEGAGRFAAGE  255 (262)
T ss_dssp             HHHHHHTTTSCHHHHHHHHHT-HHHHHHC--------------
T ss_pred             HHHHHhhhcCCHHHHHHHHHH-HHHHhcc-HHHHHHHHHHcCC
Confidence            999999988899999999999 8889999 9999999999987

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}

Probab=100.00  E-value=1.8e-45  Score=310.36  Aligned_cols=186  Identities=28%  Similarity=0.350  Sum_probs=134.6

Q ss_pred             CCCCccCchhhhh---hhH--------H----HHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccC
Q psy5402           1 MTNNPTDLINEDT---DTS--------I----TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLN   65 (198)
Q Consensus         1 ~~s~G~Dl~~~~~---~~~--------~----~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~   65 (198)
                      .||+|.|++++..   ...        .    .+++++.++.++||||||+|||+|+|||++|+++||+||++++     
T Consensus        86 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~-----  160 (298)
T 3qre_A           86 GFCAGAYLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAG-----  160 (298)
T ss_dssp             CSEECC-----------------------------CCTTGGGGSSSCEEEEECSCEETHHHHHHHHSSEEEEETT-----
T ss_pred             CcccCcCHHHHhhccccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCceeecchHHHhhCCEEEEcCC-----
Confidence            4899999998764   111        1    1234567789999999999999999999999999999999999     


Q ss_pred             CCcccceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHh
Q psy5402          66 HPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWA  145 (198)
Q Consensus        66 ~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la  145 (198)
                             ++|++||+++|++|++|++++|++++|..+|++++++|++++|+||+++||||+|+|++++.+++.+++++|+
T Consensus       161 -------a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~ellltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~la  233 (298)
T 3qre_A          161 -------AKFAAVFARRGLIAEFGISWILPRLTSWAVALDLLLSGRTFLAEEAAQLGLVKEVVTPEQLMPRALEYAEDIA  233 (298)
T ss_dssp             -------CEEECCCCHHHHHCTTSHHHHHHHHSCHHHHHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHH
T ss_pred             -------CEEECcccccCCCcchhHHHHHHHhcCHHHHHHHHHcCCCCCHHHHHHcCCCeEecCHHHHHHHHHHHHHHHH
Confidence                   9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cC-CHHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         146 KL-PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       146 ~~-~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      .. ||.+++.+|+.++.....++++.++.|...+..++.++|++|++++|++||
T Consensus       234 ~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~Egv~AF~ekR  287 (298)
T 3qre_A          234 RYCSPSSMAVIKRQVYGDATRDVVEATSHAEVLLREAMPRPDVIEGIVSFLEKR  287 (298)
T ss_dssp             HHSCHHHHHHHHHHHHGGGGC---------------------------------
T ss_pred             ccCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence            98 999999999999998888888888899999999999999999999999997

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=100.00  E-value=3.6e-44  Score=301.25  Aligned_cols=183  Identities=20%  Similarity=0.256  Sum_probs=171.8

Q ss_pred             CCCccCchhhhhhh----------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccc
Q psy5402           2 TNNPTDLINEDTDT----------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVL   71 (198)
Q Consensus         2 ~s~G~Dl~~~~~~~----------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~   71 (198)
                      ||+|.|++++....          ...+++++.++.++||||||+|||+|+|||++|+++||+||+++++          
T Consensus        65 f~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~~----------  134 (289)
T 3h0u_A           65 FFPHVDMTKVPEYTAEAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASREN----------  134 (289)
T ss_dssp             EECSBCTTCHHHHHHHHHTTSSTTCCSHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEEETTT----------
T ss_pred             eeCCcCHHHHhhcCcchhhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhhHHHHHhCCEEEEeCCC----------
Confidence            56788999885422          2246788999999999999999999999999999999999999964          


Q ss_pred             eEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHH
Q psy5402          72 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQS  151 (198)
Q Consensus        72 ~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a  151 (198)
                       ++|++||+++|++|++|++++|++++|..+|++++++|++++|+||+++||||+|+|++++.+++.+++++|++.||.+
T Consensus       135 -a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~a  213 (289)
T 3h0u_A          135 -AILGQPEVGIGAPPGAGAIQHLTRLLGRGRALEAVLTSSDFDADLAERYGWVNRAVPDAELDEFVAGIAARMSGFPRDA  213 (289)
T ss_dssp             -CEEECTHHHHTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             -cEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEecCHHHHHHHHHHHHHHHHhCCHHH
Confidence             9999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Q psy5402         152 MIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN  196 (198)
Q Consensus       152 ~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~  196 (198)
                      ++.+|+.++.... ++++.++.|...+..++.++|++|++++|++
T Consensus       214 ~~~~K~~l~~~~~-~l~~~l~~e~~~~~~~~~s~d~~egi~AFle  257 (289)
T 3h0u_A          214 LIAAKSAINAISL-PAPAEVRADAALFQQLVRGEKVQQRTAELFK  257 (289)
T ss_dssp             HHHHHHHHHHHHS-CCHHHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcc-cHHHHHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence            9999999999876 7899999999999999999999999999998

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=100.00  E-value=3.6e-44  Score=299.44  Aligned_cols=186  Identities=19%  Similarity=0.235  Sum_probs=153.7

Q ss_pred             CCCCccCchhhhhhh-------HHHH----HHH-HHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCc
Q psy5402           1 MTNNPTDLINEDTDT-------SITL----QKY-VAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPV   68 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~-------~~~~----~~~-~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~   68 (198)
                      .||+|.|++++....       ...+    .++ +.++.++||||||+|||+|+|||++|+++||+||++++        
T Consensus        65 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~--------  136 (276)
T 2j5i_A           65 AWTAGMDLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADE--------  136 (276)
T ss_dssp             CSBCCBCHHHHHHHHHHSCTTHHHHHHHHHHHHHTTTTTTCSSCEEEEECSCEEGGGHHHHHHSSEEEEETT--------
T ss_pred             CCcCCcChhhHhhccccchhHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEEcCC--------
Confidence            489999999874221       1122    232 56788999999999999999999999999999999999        


Q ss_pred             ccceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCC
Q psy5402          69 FVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLP  148 (198)
Q Consensus        69 ~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~  148 (198)
                          ++|++||+++|++|++|++++|++++|..+|++++++|+.++|+||+++||||+|+|++++.+++.++++++++.|
T Consensus       137 ----a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~  212 (276)
T 2j5i_A          137 ----ATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTFGGQKAAEMGLVNESVPLAQLREVTIELARNLLEKN  212 (276)
T ss_dssp             ----CEEECGGGGGTCCCCTTHHHHHHHHSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSC
T ss_pred             ----CEEeCcccccCCCCcchHHHHHHHHhCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCC
Confidence                9999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHH--hCCH-HHHHHHHHHHccC
Q psy5402         149 PQSMIFAKQLVRVPMLSMLHEANKRECKRLEER--WESE-EFMNAITAFFNRK  198 (198)
Q Consensus       149 ~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~--~~~~-~~~e~~~af~~kr  198 (198)
                      |.+++.+|+.++.....++++.++.|...+...  +.++ |++|++++|++||
T Consensus       213 p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~~d~~eg~~AF~ekr  265 (276)
T 2j5i_A          213 PVVLRAAKHGFKRCRELTWEQNEDYLYAKLDQSRLLDTEGGREQGMKQFLDDK  265 (276)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHC----------------
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcc
Confidence            999999999999988878888888887766655  6789 9999999999986

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A

Probab=100.00  E-value=1e-44  Score=301.43  Aligned_cols=184  Identities=22%  Similarity=0.218  Sum_probs=168.7

Q ss_pred             CCCccCchhhhhhhHH------HH-HHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEE
Q psy5402           2 TNNPTDLINEDTDTSI------TL-QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQAT   74 (198)
Q Consensus         2 ~s~G~Dl~~~~~~~~~------~~-~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~   74 (198)
                      ||+|.|++++......      .+ ...+ ...++||||||+|||+|+|||++|+++||+||++++            ++
T Consensus        67 F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~------------a~  133 (267)
T 3r9t_A           67 FCAGADLKAIARRENLYHPDHPEWGFAGY-VRHFIDKPTIAAVNGTALGGGTELALASDLVVADER------------AQ  133 (267)
T ss_dssp             EECCBCHHHHHTTCCCSCTTCGGGCGGGT-TTCCCSSCEEEEECSEECTHHHHHHHHSSEEEEETT------------CE
T ss_pred             eeCCcChHHHhcccchhhHHHHhHHHHHH-HHHhCCCCEEEEECCEEEhHHHHHHHhCCEEEEcCC------------CE
Confidence            8999999987542110      11 0111 223899999999999999999999999999999999            99


Q ss_pred             EecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHH
Q psy5402          75 FHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIF  154 (198)
Q Consensus        75 ~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~  154 (198)
                      |++||+++|++|++|++++|++++|..+|++++++|+.++|+||+++||||+|+|++++.+++.+++++|+..||.+++.
T Consensus       134 f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~  213 (267)
T 3r9t_A          134 FGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGLINEVVEAGSVLDAALALASAITVNAPLSVQA  213 (267)
T ss_dssp             ECCGGGGTTCCCTTTHHHHHHHHSCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECTTCHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             EECcccccCCCCCccHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCccEEcChhHHHHHHHHHHHHHHhCChHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH---hhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         155 AKQL---VRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       155 ~K~~---l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +|+.   ++.....++++.++.|...+..++.++|++|++++|++||
T Consensus       214 ~K~~~~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR  260 (267)
T 3r9t_A          214 SKRIAYGVDDGVVVGDEPGWDRTMREMRALLKSEDAKEGPRAFAEKR  260 (267)
T ss_dssp             HHHHHTTEETTEEGGGHHHHHHHHHHHHHHTTSSHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence            9999   9988888899999999999999999999999999999997

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=100.00  E-value=7.1e-44  Score=297.11  Aligned_cols=185  Identities=22%  Similarity=0.288  Sum_probs=171.5

Q ss_pred             CCCccCchhhhhhh-------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEE
Q psy5402           2 TNNPTDLINEDTDT-------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQAT   74 (198)
Q Consensus         2 ~s~G~Dl~~~~~~~-------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~   74 (198)
                      ||+|.|++++....       ...+++++.+|.++||||||+|||+|+|||++|+++||+||++++            ++
T Consensus        70 F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~------------a~  137 (272)
T 1hzd_A           70 FCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASS------------AK  137 (272)
T ss_dssp             EECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETT------------CE
T ss_pred             CcCCCChhhhhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEeCceEEecHHHHHHhCCEEEEcCC------------CE
Confidence            89999999875321       234567888999999999999999999999999999999999999            99


Q ss_pred             EecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhH----HHHHHHHHHHHhcCCHH
Q psy5402          75 FHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEI----ERDLWPRIHAWAKLPPQ  150 (198)
Q Consensus        75 ~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l----~~~a~~~a~~la~~~~~  150 (198)
                      |++||+++|++|++|++++|++++|..+|++++++|+.++|+||+++||||+|+|++++    .+.+.+++++++..||.
T Consensus       138 f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~~~~~a~~~a~~la~~~p~  217 (272)
T 1hzd_A          138 MGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPV  217 (272)
T ss_dssp             EECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHTCEEEHHHHHHHTSCSEEECCCTTSCHHHHHHHHHHHTTTTSCHH
T ss_pred             EeCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCcceecChhhhhHHHHHHHHHHHHHHHhCCHH
Confidence            99999999999999999999999999999999999999999999999999999998764    55788999999999999


Q ss_pred             HHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         151 SMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       151 a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +++.+|+.++.....++++.++.|...+..++.++|++|++++|++||
T Consensus       218 a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr  265 (272)
T 1hzd_A          218 AMRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKR  265 (272)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCC
Confidence            999999999988788899999999999999999999999999999987

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=100.00  E-value=1.9e-43  Score=293.78  Aligned_cols=182  Identities=15%  Similarity=0.148  Sum_probs=165.5

Q ss_pred             CCCCccCchhhhhh---------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccc
Q psy5402           1 MTNNPTDLINEDTD---------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVL   71 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~---------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~   71 (198)
                      .||+|.|++++...         ....+++++.+|.++||||||+|||+|+|||++|+++||+||++++           
T Consensus        62 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-----------  130 (267)
T 3hp0_A           62 VFCFGADFQEIYQEMKRGRKQASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQT-----------  130 (267)
T ss_dssp             CSBCCBCHHHHHHTTTTTCCSCCCCHHHHHHHHHHHHSSSEEEEEECSEEETTHHHHHHHSSEEEECTT-----------
T ss_pred             ceecCcCHHHHHhcccChHHHHHHHHHHHHHHHHHHcCCCCEEEEECCEEeehHHHHHHhCCEEEEcCC-----------
Confidence            48999999988643         2356788999999999999999999999999999999999999999           


Q ss_pred             eEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHH
Q psy5402          72 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQS  151 (198)
Q Consensus        72 ~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a  151 (198)
                       ++|++||+++|++|++| +++|++++|..+|++++++|+.++|+||+++||||+|+|+.+  +.+.+++++++..||.+
T Consensus       131 -a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~A~ellltg~~i~A~eA~~~GLV~~vv~~~~--~~~~~~a~~la~~~p~a  206 (267)
T 3hp0_A          131 -ASFSLSELLFGLYPACV-LPFLIRRIGRQKAHYMTLMTKPISVQEASEWGLIDAFDAESD--VLLRKHLLRLRRLNKKG  206 (267)
T ss_dssp             -CEEECCGGGGTCCCTTT-HHHHHHHHCHHHHHHHHHHCCCBCHHHHHHHTSSSCBCSCTT--HHHHHHHHHHTTSCHHH
T ss_pred             -CEEECchhccCcCchhH-HHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCcceecCCHH--HHHHHHHHHHHhCCHHH
Confidence             99999999999999886 668999999999999999999999999999999999998644  34678999999999999


Q ss_pred             HHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         152 MIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       152 ~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      ++.+|+.++... ..+++.++.|.+.+..++.++|++|++++|+|||
T Consensus       207 ~~~~K~~l~~~~-~~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekr  252 (267)
T 3hp0_A          207 IAHYKQFMSSLD-HQVSRAKATALTANQDMFSDPQNQMGIIRYVETG  252 (267)
T ss_dssp             HHHHHHHHHHHC-CHHHHHHHHHHHHHHHHTTSTTHHHHHHHHTTSC
T ss_pred             HHHHHHHHHhcc-cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC
Confidence            999999999864 4467777888888999999999999999999997

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=100.00  E-value=3.2e-44  Score=296.87  Aligned_cols=184  Identities=20%  Similarity=0.220  Sum_probs=151.9

Q ss_pred             CCCCccCchhhhhhhHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccc
Q psy5402           1 MTNNPTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFT   80 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~   80 (198)
                      .||+|.|++++...  ..++.+...+.++||||||+|||+|+|||++|+++||+||++++            ++|++||+
T Consensus        65 ~F~aG~Dl~~~~~~--~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~------------a~f~~pe~  130 (256)
T 3pe8_A           65 VFCAGLDLKELGDT--TELPDISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASEN------------AKFADTHA  130 (256)
T ss_dssp             CSBCCBCTTTC-----------CCCCCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETT------------CEEECCHH
T ss_pred             CccCCcCHHHHhhh--HHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEcCC------------CEEECchh
Confidence            48999999998654  33455667788999999999999999999999999999999999            99999999


Q ss_pred             cccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q psy5402          81 LRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVR  160 (198)
Q Consensus        81 ~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~  160 (198)
                      ++|++|++|++++|++++|..+|++++++|++++|+||+++||||+|+|++++.+++.++++++++.||.+++.+|+.++
T Consensus       131 ~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~  210 (256)
T 3pe8_A          131 RVGLMPTWGLSVRLPQKVGVGLARRMSLTGDYLSAQDALRAGLVTEVVAHDDLLTAARRVAASIVGNNQKAVRALLDSYH  210 (256)
T ss_dssp             HHTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSCEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             hhCCCCcccHHHHHHHhcCHHHHHHHHHcCCCCCHHHHHHCCCCeEEeCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhcHHHHHHHHHHHHHH---HhCCHHHHHHHHHHHccC
Q psy5402         161 VPMLSMLHEANKRECKRLEE---RWESEEFMNAITAFFNRK  198 (198)
Q Consensus       161 ~~~~~~~~~~~~~e~~~~~~---~~~~~~~~e~~~af~~kr  198 (198)
                      .....++++.++.|...+..   .+.++|++|++.+|++||
T Consensus       211 ~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~e~~~aflek~  251 (256)
T 3pe8_A          211 RIDALQTGGALWAEAEAARQWMRSTSGDDIAASRASVIERG  251 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred             hhhcCCHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHhcc
Confidence            98888899999999888554   467889999999999986

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=100.00  E-value=1.1e-43  Score=294.62  Aligned_cols=182  Identities=19%  Similarity=0.173  Sum_probs=158.8

Q ss_pred             CCCccCchhhhhh-------------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCc
Q psy5402           2 TNNPTDLINEDTD-------------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPV   68 (198)
Q Consensus         2 ~s~G~Dl~~~~~~-------------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~   68 (198)
                      ||+|.|++++...             ....+++++.++.++||||||+|||+|+|||++|+++||+||++++        
T Consensus        63 F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~--------  134 (263)
T 3l3s_A           63 FCAGHDLKEIGRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPA--------  134 (263)
T ss_dssp             EECCSCSCCCCC-----CCSHHHHHHHHHHHHHHHHHHHTCSSCEEEEESSEEETHHHHHHHHSSEEEECTT--------
T ss_pred             ccCCcChHHHhhccccccccHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEHHHHHHHHHCCEEEecCC--------
Confidence            8999999987543             1234577889999999999999999999999999999999999999        


Q ss_pred             ccceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCC
Q psy5402          69 FVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLP  148 (198)
Q Consensus        69 ~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~  148 (198)
                          ++|++||+++|++ ++|+++++++++|..+|++++++|++++|+||+++||||+|+|++++.+++.+++++++..|
T Consensus       135 ----a~f~~pe~~~Gl~-~~g~~~~l~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~  209 (263)
T 3l3s_A          135 ----ARFCLPGVQNGGF-CTTPAVAVSRVIGRRAVTEMALTGATYDADWALAAGLINRILPEAALATHVADLAGALAARN  209 (263)
T ss_dssp             ----CEEECCTTTTTSC-CHHHHHHHHTTSCHHHHHHHHHHCCEEEHHHHHHHTSSSEECCHHHHHHHHHHHHHHHHSSC
T ss_pred             ----CEEeCchhccCCC-CccHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCC
Confidence                9999999999999 56788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Q psy5402         149 PQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN  196 (198)
Q Consensus       149 ~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~  196 (198)
                      |.+++.+|+.++.....++++.++.|...+..++.++|++|++++|.+
T Consensus       210 ~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Eg~~Af~~  257 (263)
T 3l3s_A          210 QAPLRRGLETLNRHLELPLEQAYALATPVMVEHFMDPGRRHLDWIDEG  257 (263)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHC-------------
T ss_pred             HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHhhc
Confidence            999999999999998889999999999999999999999999999976

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=2.4e-44  Score=298.98  Aligned_cols=185  Identities=19%  Similarity=0.189  Sum_probs=164.0

Q ss_pred             CCCCccCchhhhhhhHH--HHHHH-HHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEec
Q psy5402           1 MTNNPTDLINEDTDTSI--TLQKY-VAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHT   77 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~~~--~~~~~-~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~   77 (198)
                      .||+|.|++++......  ..+.+ +..+.. ||||||+|||+|+|||++|+++||+||++++            ++|++
T Consensus        71 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~-~kPvIAav~G~a~GgG~~lalacD~ria~~~------------a~f~~  137 (265)
T 3qxi_A           71 SFCAGMDLKAFARGENVVVEGRGLGFTERPP-AKPLIAAVEGYALAGGTELALATDLIVAARD------------SAFGI  137 (265)
T ss_dssp             CCCCSBC-------CCCEETTTEETTTTSCC-SSCEEEEECSEEETHHHHHHHHSSEEEEETT------------CEEEC
T ss_pred             CeeCCCChhhhhccchhhhhhhhhhHHHhhC-CCCEEEEECCceeHHHHHHHHhCCEEEEcCC------------CEEEC
Confidence            48999999987543210  00112 334444 9999999999999999999999999999999            99999


Q ss_pred             ccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy5402          78 PFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQ  157 (198)
Q Consensus        78 pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~  157 (198)
                      ||+++|++|++|++++|++++|..+|++++++|+.++|+||+++||||+|+|++++.+++.+++++|++.||.+++.+|+
T Consensus       138 pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~  217 (265)
T 3qxi_A          138 PEVKRGLVAGGGGLLRLPERIPYAIAMELALTGDNLSAERAHALGMVNVLAEPGAALDAAIALAEKITANGPLAVAATKR  217 (265)
T ss_dssp             GGGGGTCCCCSSHHHHHHHHSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             cccccCcCCcccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCccEeeChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         158 LVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       158 ~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      .++.....++++.++.|...+..++.++|++|++++|++||
T Consensus       218 ~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr  258 (265)
T 3qxi_A          218 IITESRGWSLDTRFAQQMKILFPIFTSNDAKEGAIAFAEKR  258 (265)
T ss_dssp             HHHHHTTCCTTTHHHHHHHHHHHHHHCHHHHHHHHHHHTTS
T ss_pred             HHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCC
Confidence            99998888889999999999999999999999999999997

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=100.00  E-value=8.2e-45  Score=300.62  Aligned_cols=182  Identities=23%  Similarity=0.190  Sum_probs=141.6

Q ss_pred             CCCccCchhhhhhhH-------HHHHHHHHHH-hcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceE
Q psy5402           2 TNNPTDLINEDTDTS-------ITLQKYVAAF-IDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA   73 (198)
Q Consensus         2 ~s~G~Dl~~~~~~~~-------~~~~~~~~~i-~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a   73 (198)
                      ||+|.|++++.....       ..+++++.++ .++||||||+|||+|+|||++|+++||+||++++            +
T Consensus        69 F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~------------a  136 (258)
T 3lao_A           69 FTAGLDLMELAPKLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARG------------T  136 (258)
T ss_dssp             SBCCBCHHHHGGGCBTTBCCCCTTCCCTTSCSSSCCCSCEEEEECSEEETHHHHHHHTSSEEEEETT------------C
T ss_pred             eecCcCHHHHhhccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeEhHHHHHHHhCCEEEEcCC------------C
Confidence            899999999865321       2334567788 9999999999999999999999999999999999            9


Q ss_pred             EEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHH
Q psy5402          74 TFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMI  153 (198)
Q Consensus        74 ~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~  153 (198)
                      +|++||+++|++|++|++++|++++|..+|++++++|++++|+||+++||||+|+|++++.+++.++++++++.||.+++
T Consensus       137 ~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~  216 (258)
T 3lao_A          137 RFAHLEVLRGIPPLGGSTVRFPRAAGWTDAMRYILTGDEFDADEALRMRLLTEVVEPGEELARALEYAERIARAAPLAVR  216 (258)
T ss_dssp             EEECGGGGTCCCSSCCCCSHHHHHHCHHHHHHHHTTCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHH
T ss_pred             EEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy5402         154 FAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFF  195 (198)
Q Consensus       154 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~  195 (198)
                      .+|+.++.....++++.++.|...+..++.++|++|++++|+
T Consensus       217 ~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~  258 (258)
T 3lao_A          217 AALQSAFQGRDEGDDAALSRVNESLAALIGSEDVREGVLAMV  258 (258)
T ss_dssp             HHHHHHHHHTC-------------------------------
T ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHhhC
Confidence            999999998888899999999999999999999999999995

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=100.00  E-value=1.2e-43  Score=298.01  Aligned_cols=184  Identities=20%  Similarity=0.256  Sum_probs=163.4

Q ss_pred             CCCccCchhhhhhh---------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccce
Q psy5402           2 TNNPTDLINEDTDT---------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQ   72 (198)
Q Consensus         2 ~s~G~Dl~~~~~~~---------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~   72 (198)
                      ||+|.|++++....         ...+++++.++.++||||||+|||+|+|||++|+++||+||++++            
T Consensus        86 FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~------------  153 (289)
T 3t89_A           86 FCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADN------------  153 (289)
T ss_dssp             EECCBCCC----------------CTHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETT------------
T ss_pred             ccCCCChhhhhccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEeCC------------
Confidence            89999999875421         113567889999999999999999999999999999999999999            


Q ss_pred             EEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHH
Q psy5402          73 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSM  152 (198)
Q Consensus        73 a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~  152 (198)
                      ++|++||+++|++|+++++++|++++|..+|++++++|+.++|+||+++||||+|+|++++.+++.+++++|+..||.++
T Consensus       154 a~f~~pe~~~Gl~~~~~g~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~la~~~~~a~  233 (289)
T 3t89_A          154 AIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMAL  233 (289)
T ss_dssp             CEEECCHHHHTCCCCSTTTHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHH
T ss_pred             CEEeccccccCCCCCchHHHHHHHhcCHHHHHHHHHcCCcccHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHcCCHHHH
Confidence            99999999999888777799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         153 IFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       153 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +.+|+.++..... .....+.|.+.+..++.++|++|++++|++||
T Consensus       234 ~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekR  278 (289)
T 3t89_A          234 RCLKAALNADCDG-QAGLQELAGNATMLFYMTEEGQEGRNAFNQKR  278 (289)
T ss_dssp             HHHHHHHHHTTSH-HHHHHHHHHHHHHHHTTSSTTTHHHHHHHTTS
T ss_pred             HHHHHHHHhhccc-chHHHHHHHHHHHHHhcCHHHHHHHHHHhcCC
Confidence            9999999987542 33444567777888999999999999999997

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=100.00  E-value=2.5e-44  Score=307.44  Aligned_cols=184  Identities=21%  Similarity=0.211  Sum_probs=140.0

Q ss_pred             CCCccCchhhhhhh------------------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEee-cCCc
Q psy5402           2 TNNPTDLINEDTDT------------------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFAS-DTAI   62 (198)
Q Consensus         2 ~s~G~Dl~~~~~~~------------------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~-~~~~   62 (198)
                      ||+|.|++++....                  ...+.+++..|.++||||||+|||+|+|||++|+++||+|||+ ++  
T Consensus       121 FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~A~GgG~~LalacD~riAs~~~--  198 (334)
T 3t8b_A          121 FCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREY--  198 (334)
T ss_dssp             EECCSCTTTTC----------------------CCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTT--
T ss_pred             ccCCCCHHHhhcccccccccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccCcchhHhhCCEEEEeCCC--
Confidence            89999999864211                  1124567889999999999999999999999999999999999 99  


Q ss_pred             ccCCCcccceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHH
Q psy5402          63 LLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIH  142 (198)
Q Consensus        63 ~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~  142 (198)
                                ++|++||+++|++|++|++++|++++|..+|++++++|+.|+|+||+++||||+|||++++.+++.++++
T Consensus       199 ----------A~f~~pe~~lGl~p~~gg~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~  268 (334)
T 3t8b_A          199 ----------ARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAA  268 (334)
T ss_dssp             ----------CEEECCCTTCSSSSCCSCHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHTSCSEEECGGGHHHHHHHHHH
T ss_pred             ----------cEEECcccccCCCCcccHHHHHHHHhhHHHHHHHHHhCCcCCHHHHHHCCCCcEecCHHHHHHHHHHHHH
Confidence                      9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         143 AWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       143 ~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +|+..||.+++.+|+.++.... .+......|.+.+..++.++|++|++.+|+|||
T Consensus       269 ~ia~~~p~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~s~d~~Eg~~AFleKR  323 (334)
T 3t8b_A          269 EINAKSPQAQRMLKFAFNLLDD-GLVGQQLFAGEATRLAYMTDEAVEGRDAFLQKR  323 (334)
T ss_dssp             HHHTSCHHHHHHHHHHHHHTCC-CC-------------------------------
T ss_pred             HHHhCCHHHHHHHHHHHHhhhc-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCC
Confidence            9999999999999999998744 344455667777788899999999999999997

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=7.7e-43  Score=300.44  Aligned_cols=185  Identities=18%  Similarity=0.227  Sum_probs=166.5

Q ss_pred             CCCCccCchhhhhhh----------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCccc
Q psy5402           1 MTNNPTDLINEDTDT----------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFV   70 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~----------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~   70 (198)
                      .||+|+|++++....          ....++++..|.++||||||+|||+|+|||++|+++||+||++++          
T Consensus        66 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~----------  135 (353)
T 4hdt_A           66 GLCAGGDVVAIYHSAKADGAEARRFWFDEYRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDT----------  135 (353)
T ss_dssp             BSBCCBCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHCSSCEEEEECBEEETHHHHHHTTSSEEEECTT----------
T ss_pred             CEecCcCHHHHhhccchhhHHHHHHHHHHHHHHHHHHHCCCCEEEEeECceeecCccccCCcCeeccchh----------
Confidence            389999999874321          224567888999999999999999999999999999999999999          


Q ss_pred             ceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHH----------
Q psy5402          71 LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPR----------  140 (198)
Q Consensus        71 ~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~----------  140 (198)
                        ++|++||+++|++|++|++++++|++| .+++++++||++++|+||+++||||+|||++++.+.+.++          
T Consensus       136 --a~f~~pe~~iGl~p~~g~~~~l~rl~g-~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~la~~~~~~~l~  212 (353)
T 4hdt_A          136 --TKMAMPEVGIGFIPDVGGTYLLSRAPG-KLGLHAALTGAPFSGADAIVMGFADHYVPHDKIDEFTRAVIADGVDAALA  212 (353)
T ss_dssp             --CEEECCGGGGTCCCCTTHHHHHHTSST-THHHHHHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHHHCHHHHHH
T ss_pred             --ccccCcccccccCCCccceehhhhhhh-HHHHHHHhcCCCCCHHHHHHcCCCcEEeCHHHHHHHHHHHHHhchhHHHH
Confidence              999999999999999999999999888 6899999999999999999999999999999998877665          


Q ss_pred             ---------------------------------------------HHHHhcCCHHHHHHHHHHhhchhh-hcHHHHHHHH
Q psy5402         141 ---------------------------------------------IHAWAKLPPQSMIFAKQLVRVPML-SMLHEANKRE  174 (198)
Q Consensus       141 ---------------------------------------------a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~e  174 (198)
                                                                   ++.|++.+|.+++.+|+.+++... .++++.++.|
T Consensus       213 ~~~~~~~~~~l~~~~~~i~~~f~~~~~~~i~~~L~~~~~~~a~~~a~~la~~sP~a~~~~k~~l~~~~~~~sl~e~l~~E  292 (353)
T 4hdt_A          213 AHAQEPPASPLAEQRSWIDECYTGDTVADIIAALRAHDAPAAGEAADLIATRSPIALSVTLESVRRAAKLQSLEDTLRQE  292 (353)
T ss_dssp             HHCBCCCCCHHHHTHHHHHHHTTCSSHHHHHHHHHHHCSHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             HhcccCCccchHHHHHHHHHHhCCCCHHHHHHHHHhcccHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence                                                         556889999999999999998766 4799999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHH--ccC
Q psy5402         175 CKRLEERWESEEFMNAITAFF--NRK  198 (198)
Q Consensus       175 ~~~~~~~~~~~~~~e~~~af~--~kr  198 (198)
                      ...+..++.++|++||+++|+  +||
T Consensus       293 ~~~~~~~~~s~D~~EGvrAfl~dekR  318 (353)
T 4hdt_A          293 YRVSCASLKSHDLVEGIRAQLVDKDR  318 (353)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHC----
T ss_pred             HHHHHHHhCCchHHHHHhhhhhCcCC
Confidence            999999999999999999999  776

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=100.00  E-value=3e-43  Score=292.20  Aligned_cols=180  Identities=23%  Similarity=0.331  Sum_probs=164.2

Q ss_pred             CCCCccCchhh--hhhhHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecc
Q psy5402           1 MTNNPTDLINE--DTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTP   78 (198)
Q Consensus         1 ~~s~G~Dl~~~--~~~~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~p   78 (198)
                      .||+|.|++..  .......+++++.++.++||||||+|||+|+|||++|+++||+||++++            ++|++|
T Consensus        76 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~------------a~f~~p  143 (264)
T 3he2_A           76 AFCAGADLSGDAFAADYPDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPD------------AFFQFP  143 (264)
T ss_dssp             CSBCCBCCTTCTTGGGHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHHSSEEEECTT------------CEEECT
T ss_pred             CccCCcCCccchhhHHHHHHHHHHHHHHHhCCCCEEEEECCcEEcchhHHHHhCCEEEEcCC------------CEEECc
Confidence            48999999842  2233456778899999999999999999999999999999999999999            999999


Q ss_pred             cccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy5402          79 FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQL  158 (198)
Q Consensus        79 e~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~  158 (198)
                      |+++|++|++|++++|++++|..+|++++++|+.++|+||+++||||+|++    .+++.++++++++.||.+++.+|+.
T Consensus       144 e~~~Gl~p~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLV~~v~~----~~~a~~~A~~la~~~p~a~~~~K~~  219 (264)
T 3he2_A          144 TSKYGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGT----LADAQAWAAEIARLAPLAIQHAKRV  219 (264)
T ss_dssp             HHHHTCCCCHHHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEECC----HHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             ccccCcCCcchHHHHHHHHhCHHHHHHHHHcCCCccHHHHHHCCCeEEEec----HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999987    3578999999999999999999999


Q ss_pred             hhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         159 VRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       159 l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      ++...  ++++.++.|.+.+..++.++|++|++.+|+|||
T Consensus       220 l~~~~--~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekR  257 (264)
T 3he2_A          220 LNDDG--AIEEAWPAHKELFDKAWGSQDVIEAQVARMEKR  257 (264)
T ss_dssp             HHTSS--CSCCCCHHHHHHHHHHHTSHHHHHHHHHHHTTS
T ss_pred             HHccC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCC
Confidence            99862  345566778889999999999999999999997

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=100.00  E-value=2.7e-43  Score=289.22  Aligned_cols=182  Identities=21%  Similarity=0.259  Sum_probs=168.9

Q ss_pred             CCCccCchhhhhhhHH--HHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEeccc
Q psy5402           2 TNNPTDLINEDTDTSI--TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPF   79 (198)
Q Consensus         2 ~s~G~Dl~~~~~~~~~--~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe   79 (198)
                      ||+|.|++++......  ..++++.++.++||||||+|||+|+|||++|+++||+||++++            ++|++||
T Consensus        60 F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~------------a~f~~pe  127 (243)
T 2q35_A           60 FSSGASKEFLIRKTRGEVEVLDLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQE------------SVYATNF  127 (243)
T ss_dssp             EECBSCHHHHHHHHTTCCCCCCCHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEESS------------SEEECCH
T ss_pred             eeCCCChHHHhhccchhhHHHHHHHHHHhCCCCEEEEEcCccccchHHHHHhCCEEEEeCC------------CEEECCc
Confidence            8999999987532100  1346788899999999999999999999999999999999999            9999999


Q ss_pred             ccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q psy5402          80 TLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLV  159 (198)
Q Consensus        80 ~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l  159 (198)
                      +++|++|++|+++++++++|..++++++++|++++|+||+++||||+++|++++.+++.+++++++..||.+++.+|+.+
T Consensus       128 ~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l  207 (243)
T 2q35_A          128 MKYGFTPVGATSLILREKLGSELAQEMIYTGENYRGKELAERGIPFPVVSRQDVLNYAQQLGQKIAKSPRLSLVALKQHL  207 (243)
T ss_dssp             HHHTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTCSSCEECHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             cccCCCCcchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCCEecChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy5402         160 RVPMLSMLHEANKRECKRLEERWESEEFMNAITAFF  195 (198)
Q Consensus       160 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~  195 (198)
                      +.....++++.++.|...+...+.++|++|++++|+
T Consensus       208 ~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~a~~  243 (243)
T 2q35_A          208 SADIKAKFPEAIKKELEIHQVTFNQPEIASRIQQEF  243 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSTTHHHHHHTTC
T ss_pred             HHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHhhcC
Confidence            998777888999999999999999999999999873

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}

Probab=100.00  E-value=3.4e-42  Score=284.33  Aligned_cols=176  Identities=18%  Similarity=0.253  Sum_probs=160.2

Q ss_pred             CCCCccCchhhhhhh-------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceE
Q psy5402           1 MTNNPTDLINEDTDT-------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA   73 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~-------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a   73 (198)
                      .||+|.|++++....       ...+++++.++.++||||||+|||+|+|||++|+++||+||++++            +
T Consensus        62 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~------------a  129 (254)
T 3isa_A           62 NFSAGFDFTDYETQSEGDLLLRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPE------------A  129 (254)
T ss_dssp             CSCCCBCCTTCTTSCHHHHHHHHHHHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEECTT------------C
T ss_pred             ceeeCcChHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeEeecchhHHHhCCEEEEcCC------------C
Confidence            489999999985432       124567889999999999999999999999999999999999999            9


Q ss_pred             EEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHH
Q psy5402          74 TFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMI  153 (198)
Q Consensus        74 ~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~  153 (198)
                      +|++||+++|++|   ++++|++++|..+|++++++|+.++|+||+++||||+|+|++++.+++.++++++++.||.+++
T Consensus       130 ~f~~pe~~~Gl~p---g~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~  206 (254)
T 3isa_A          130 GFRMPGLKFGLVL---GTRRFRDIVGADQALSILGSARAFDADEARRIGFVRDCAAQAQWPALIDAAAEAATALDPATRA  206 (254)
T ss_dssp             EEECCGGGGTCCC---SHHHHHHHHCHHHHHHHHTTTCEEEHHHHHHTTSSSEECCGGGHHHHHHHHHHHHTTSCHHHHH
T ss_pred             EEECchhccCccH---HHHHHHHHcCHHHHHHHHHhCCCCcHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999998   3689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         154 FAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       154 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      .+|+.++..       .++.|...+...+.++|++|++.+|++||
T Consensus       207 ~~K~~l~~~-------~~~~e~~~~~~~~~s~d~~egi~af~ekr  244 (254)
T 3isa_A          207 TLHRVLRDD-------HDDADLAALARSAAQPGFKARIRDYLAQP  244 (254)
T ss_dssp             HHHHHHSCC-------CHHHHHHHHHHHHHSTTHHHHHHHHHHC-
T ss_pred             HHHHHHhhh-------hHHHHHHHHHHHhCCHHHHHHHHHHHhcC
Confidence            999999653       23457778889999999999999999997

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}

Probab=100.00  E-value=7.5e-42  Score=295.33  Aligned_cols=183  Identities=16%  Similarity=0.206  Sum_probs=166.5

Q ss_pred             CCCccCchhhhhhh----------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccc
Q psy5402           2 TNNPTDLINEDTDT----------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVL   71 (198)
Q Consensus         2 ~s~G~Dl~~~~~~~----------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~   71 (198)
                      ||+|+|++++....          ...+.+++.+|.++||||||+|||+|+|||++|+++||+|||+++           
T Consensus        64 FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~-----------  132 (363)
T 3bpt_A           64 FCAGGDIRVISEAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEK-----------  132 (363)
T ss_dssp             EECCBCHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHTTTTSSEEEECTT-----------
T ss_pred             ccCCcCHHHHHhhcccccHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCC-----------
Confidence            89999999874321          122346778999999999999999999999999999999999999           


Q ss_pred             eEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHH--------------
Q psy5402          72 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDL--------------  137 (198)
Q Consensus        72 ~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a--------------  137 (198)
                       ++|++||+++|++|++|++++|++++|. +|+++++||++++|+||+++||||+|+|++++.+.+              
T Consensus       133 -a~f~~pe~~~Gl~p~~g~~~~L~r~~g~-~a~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~i  210 (363)
T 3bpt_A          133 -CLFAMPETAIGLFPDVGGGYFLPRLQGK-LGYFLALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDLLALKSPSKENI  210 (363)
T ss_dssp             -CEEECCGGGTTSCCCTTHHHHHHHSSTT-HHHHHHHHCCCEETHHHHHTTSCSEECCGGGHHHHHHHHHHCSSCCHHHH
T ss_pred             -eEEeCCccccCCCCCchHHHHHHHhhHH-HHHHHHHcCCCCCHHHHHHCCCcceecCHHHHHHHHHHHHhcccCCHHHH
Confidence             9999999999999999999999999997 999999999999999999999999999998876432              


Q ss_pred             -------------------------------------H---------------HHHHHHhcCCHHHHHHHHHHhhchhhh
Q psy5402         138 -------------------------------------W---------------PRIHAWAKLPPQSMIFAKQLVRVPMLS  165 (198)
Q Consensus       138 -------------------------------------~---------------~~a~~la~~~~~a~~~~K~~l~~~~~~  165 (198)
                                                           .               +++++|++.||.+++.+|++++.....
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~f~~~~~~ei~~al~~~~~~~a~~~a~~la~~sP~al~~~k~~l~~~~~~  290 (363)
T 3bpt_A          211 ASVLENYHTESKIDRDKSFILEEHMDKINSCFSANTVEEIIENLQQDGSSFALEQLKVINKMSPTSLKITLRQLMEGSSK  290 (363)
T ss_dssp             HHHHHHHHHHCCTTTTCCCTTGGGHHHHHHHTTSSSHHHHHHHHHHHCCHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHhhhcccCCCchhhHHHHHHHHHHhCCCCHHHHHHHHhccChHHHHHHHHHHHhCCchHHHHHHHHHHHHHhC
Confidence                                                 2               578899999999999999999998888


Q ss_pred             cHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-cc
Q psy5402         166 MLHEANKRECKRLEERWESEEFMNAITAFF-NR  197 (198)
Q Consensus       166 ~~~~~~~~e~~~~~~~~~~~~~~e~~~af~-~k  197 (198)
                      ++++.++.|...+..++.++|++||+++|+ +|
T Consensus       291 ~l~~~l~~E~~~~~~~~~s~D~~EGv~Afl~eK  323 (363)
T 3bpt_A          291 TLQEVLTMEYRLSQACMRGHDFHEGVRAVLIDK  323 (363)
T ss_dssp             CHHHHHHHHHHHHHHHHTSSHHHHHHHHHTTSC
T ss_pred             CHHHHHHHHHHHHHHHhcCccHHhhhhheeeCC
Confidence            899999999999999999999999999999 67

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=100.00  E-value=9.7e-42  Score=284.88  Aligned_cols=173  Identities=23%  Similarity=0.335  Sum_probs=163.7

Q ss_pred             CCCCccCchhhhhhh-------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceE
Q psy5402           1 MTNNPTDLINEDTDT-------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA   73 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~-------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a   73 (198)
                      .||+|.|++++....       ...+++++.+|.++||||||+|||+|+|||++|+++||+||++++            +
T Consensus        79 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~------------a  146 (277)
T 4di1_A           79 IFSAGDDMPELRTLNAPEADTAARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDN------------V  146 (277)
T ss_dssp             CSBCCBCHHHHHTCCHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETT------------C
T ss_pred             CEecCcCcccccccChHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeEehhHHHHHHhCCEEEEcCC------------C
Confidence            489999999986432       235667889999999999999999999999999999999999999            9


Q ss_pred             EEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHH
Q psy5402          74 TFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMI  153 (198)
Q Consensus        74 ~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~  153 (198)
                      +|++||+++|++|++|++++|++++|..+|++++++|+.++|+||+++||||+|+|++++.+++.+++++++..||.+++
T Consensus       147 ~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~  226 (277)
T 4di1_A          147 KFGATEILAGLIPGGGGMGRLTRVVGSSRAKELVFSGRFFDAEEALALGLIDDMVAPDDVYDSAVAWARRYLECPPRALA  226 (277)
T ss_dssp             EEECGGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHTTTTSCHHHHH
T ss_pred             EEECcccccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhchhhhcHHHHHHHHHHHHHHHhCCH
Q psy5402         154 FAKQLVRVPMLSMLHEANKRECKRLEERWESE  185 (198)
Q Consensus       154 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~  185 (198)
                      .+|+.++.....++++.++.|...+..++.++
T Consensus       227 ~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~  258 (277)
T 4di1_A          227 AAKAVINDVFELEATERAAAERRRYVELFAAG  258 (277)
T ss_dssp             HHHHHHHHTTTSCHHHHHHHHHHHHHHTTSGG
T ss_pred             HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCc
Confidence            99999999988899999999999999999887

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}

Probab=100.00  E-value=2.5e-41  Score=295.70  Aligned_cols=183  Identities=16%  Similarity=0.121  Sum_probs=166.7

Q ss_pred             CCCccCchhhhhhh--------------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCC
Q psy5402           2 TNNPTDLINEDTDT--------------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHP   67 (198)
Q Consensus         2 ~s~G~Dl~~~~~~~--------------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~   67 (198)
                      ||+|+|++++....              ....++++.+|.++||||||+|||+|+|||++|+++||+|||+++       
T Consensus       100 FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~-------  172 (407)
T 3ju1_A          100 FCAGGDVRALYHASVAAKGQVTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTET-------  172 (407)
T ss_dssp             EECCBCCHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHTCSSCEEEECCSEEETHHHHHHHHCSEEEECTT-------
T ss_pred             ccCCCChhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCccccCcchHHhcCCEEEEcCC-------
Confidence            89999999875421              122346788999999999999999999999999999999999999       


Q ss_pred             cccceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHH---H--------
Q psy5402          68 VFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIER---D--------  136 (198)
Q Consensus        68 ~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~---~--------  136 (198)
                           ++|++||+++|++|++|++++|+|++| .+|+++++||++++|+||+++||||+|||++++.+   +        
T Consensus       173 -----a~f~~pe~~lGl~P~~G~t~~L~rl~g-~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~L~~~~~~~  246 (407)
T 3ju1_A          173 -----SRIAMPEVTIGLYPDVGGSYFLNRMPG-KMGLFLGLTAYHMNAADACYVGLADHYLNRDDKELMFDAMATLDWSD  246 (407)
T ss_dssp             -----CEEECGGGGGTCCSCTTHHHHTTTSST-THHHHHHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHSSCCCS
T ss_pred             -----CEEeChHhhcCCCCCchHHHHHhhhhH-HHHHHHHHcCCcCcHHHHHHCCCccEEcCHHHHHHHHHHHhcccccc
Confidence                 999999999999999999999999999 99999999999999999999999999999988776   3        


Q ss_pred             --------HHHH----------------------------------------------------HHHHhcCCHHHHHHHH
Q psy5402         137 --------LWPR----------------------------------------------------IHAWAKLPPQSMIFAK  156 (198)
Q Consensus       137 --------a~~~----------------------------------------------------a~~la~~~~~a~~~~K  156 (198)
                              +.++                                                    +++|++.||.+++.+|
T Consensus       247 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~l~~~~~~I~~~f~~sv~~i~~~L~~~~~~~~~a~~~a~~la~~sP~sl~~tk  326 (407)
T 3ju1_A          247 SPALNHQRLDTMINELSNQVDIPKGDSVLAESQEMIDRLMAGSLTDIVTRMSTLSTDEAWLSKACATMLAGSPISWHLAY  326 (407)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCSSCCCCCHHHHTHHHHHHHTCSCHHHHHHHHHHCCCSCHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             cccchhHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcccccHHHHHHHHHHHhCCHHHHHHHH
Confidence                    3221                                                    4789999999999999


Q ss_pred             HHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-cc
Q psy5402         157 QLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFF-NR  197 (198)
Q Consensus       157 ~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~-~k  197 (198)
                      +++++....++++.++.|...+..++.++|++||+++|+ +|
T Consensus       327 ~~l~~~~~~~l~~~l~~E~~~~~~~~~s~D~~EGvrAflidK  368 (407)
T 3ju1_A          327 IQTQLGTKLSLAQCFKWELTVSVNVCAKGDFCEGVRALLIDK  368 (407)
T ss_dssp             HHHHTTTCSCHHHHHHHHHHHHHHHHHHSSHHHHHHHHTTSC
T ss_pred             HHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC
Confidence            999999888999999999999999999999999999998 76

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=100.00  E-value=5.5e-41  Score=280.65  Aligned_cols=186  Identities=25%  Similarity=0.351  Sum_probs=153.0

Q ss_pred             CCCCccCchhhhhh---h-------H----H----HHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEee-cCC
Q psy5402           1 MTNNPTDLINEDTD---T-------S----I----TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFAS-DTA   61 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~---~-------~----~----~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~-~~~   61 (198)
                      .||+|.|++++...   .       .    .    .+++++.+|.++||||||+|||+|+|||++|+++||+||++ ++ 
T Consensus        65 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~~ia~~~~-  143 (280)
T 1pjh_A           65 FFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDK-  143 (280)
T ss_dssp             BSBCCBCHHHHHC-------CCSSHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTT-
T ss_pred             CccCCcCHHHHhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeeHHHHHHHHCCEEEEeCCC-
Confidence            38999999986421   0       0    0    12467889999999999999999999999999999999999 99 


Q ss_pred             cccCCCcccceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCch-----hHHHH
Q psy5402          62 ILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE-----EIERD  136 (198)
Q Consensus        62 ~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~-----~l~~~  136 (198)
                                 ++|++||+++|++|++|++++|++++|..+|++++++|++++|+||+++||||+|+|++     ++.++
T Consensus       144 -----------a~f~~pe~~lGl~p~~g~~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~~~~~~l~~~  212 (280)
T 1pjh_A          144 -----------VYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAK  212 (280)
T ss_dssp             -----------CEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTTCHHHHHHH
T ss_pred             -----------CEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHCCCcceeeCCccccHHHHHHH
Confidence                       99999999999999999999999999999999999999999999999999999999985     78888


Q ss_pred             HH-HHHHHHhcCCHHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         137 LW-PRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       137 a~-~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +. ++++++++.||.+++.+|+.++......++.....|.......|.+++..+++.+|.+||
T Consensus       213 a~~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~d~~e~~~af~~kr~~e~~~~f~~~~  275 (280)
T 1pjh_A          213 VLEELREKVKGLYLPSCLGMKKLLKSNHIDAFNKANSVEVNESLKYWVDGEPLKRFRQLGSKQ  275 (280)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHTHHHHHHTC-----
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHhCCccHHHHHHHHhcc
Confidence            85 999999999999999999999987655555544444444445555555555555555554

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=100.00  E-value=5.7e-41  Score=278.37  Aligned_cols=173  Identities=22%  Similarity=0.323  Sum_probs=156.9

Q ss_pred             CCCccCchhhhhh-h-------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceE
Q psy5402           2 TNNPTDLINEDTD-T-------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA   73 (198)
Q Consensus         2 ~s~G~Dl~~~~~~-~-------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a   73 (198)
                      ||+|.|++++... .       ...+++++.++.++||||||+|||+|+ ||++|+++||+||++++            +
T Consensus        81 FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~------------a  147 (263)
T 2j5g_A           81 WMAEIDFPSLGDVTNPREWDKTYWEGKKVLQNLLDIEVPVISAVNGAAL-LHSEYILTTDIILASEN------------T  147 (263)
T ss_dssp             EECEECSGGGCCTTSHHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEC-SCGGGGGGCSEEEEETT------------C
T ss_pred             cccCcCHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCcch-HHHHHHHhCCEEEEcCC------------C
Confidence            8999999987532 1       123457788999999999999999999 59999999999999999            9


Q ss_pred             EEec-ccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHH
Q psy5402          74 TFHT-PFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSM  152 (198)
Q Consensus        74 ~~~~-pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~  152 (198)
                      +|++ ||+++|++|++|+++++++++|..+|++++++|+.++|+||+++||||+|+|++++.+++.++++++++.||.++
T Consensus       148 ~f~~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~  227 (263)
T 2j5g_A          148 VFQDMPHLNAGIVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNVVHEVLPQSKLMERAWEIARTLAKQPTLNL  227 (263)
T ss_dssp             EECCCHHHHHTCCCCSSHHHHHHHHHHHHHHHHHHHTTCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHH
T ss_pred             EEecCcccccccCCCccHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCccEecChHHHHHHHHHHHHHHHhCCHHHH
Confidence            9999 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         153 IFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       153 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +.+|+.++.....++++.++.|           ...||+++|++||
T Consensus       228 ~~~K~~l~~~~~~~l~~~l~~e-----------~~~eg~~af~~~~  262 (263)
T 2j5g_A          228 RYTRVALTQRLKRLVNEGIGYG-----------LALEGITATDLRN  262 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHTTC
T ss_pred             HHHHHHHHhhhhccHHHHHHHH-----------HHHhhHHHHHhcc
Confidence            9999999988766666665554           3459999999997

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A

Probab=100.00  E-value=1.7e-40  Score=280.87  Aligned_cols=182  Identities=16%  Similarity=0.117  Sum_probs=163.4

Q ss_pred             CCCCccCchhhhhhhH--------HH---HHHHHHHH---hcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCC
Q psy5402           1 MTNNPTDLINEDTDTS--------IT---LQKYVAAF---IDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNH   66 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~~--------~~---~~~~~~~i---~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~   66 (198)
                      .||+|+|++++.....        ..   +.+.+..+   ..+||||||+|||+|+|||++|+++||+||++++      
T Consensus        97 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~------  170 (305)
T 3m6n_A           97 VFNLGGDLALFCQLIREGDRARLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEG------  170 (305)
T ss_dssp             SSBCCBCHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTGGGTTCEEEEEECSCEETHHHHHHHHSSEEEEETT------
T ss_pred             CeecCcCHHHHHhccccccHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCEeehHHHHHHHhCCEEEEcCC------
Confidence            4899999998854311        12   22233333   4589999999999999999999999999999999      


Q ss_pred             CcccceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhc
Q psy5402          67 PVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK  146 (198)
Q Consensus        67 ~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~  146 (198)
                            ++|++||+++|++|++|++++|++++|..+|++++++|+.++|+||+++||||+|+|++++.+++.+++++|+.
T Consensus       171 ------a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~  244 (305)
T 3m6n_A          171 ------VMMGLPEVLFDLFPGMGAYSFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVIRESKR  244 (305)
T ss_dssp             ------CEEECGGGGGTCCCCSSHHHHHTTTSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHTT
T ss_pred             ------CEEECchhccCcCCCccHHHHHHHHhcHHHHHHHHHcCCCCCHHHHHHCCCCCEecChhHHHHHHHHHHHHHhh
Confidence                  99999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             CCHHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy5402         147 LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFF  195 (198)
Q Consensus       147 ~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~  195 (198)
                       +|.+++.+|+.++.....++++.++.|...+..++.++|....+.+++
T Consensus       245 -~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~~~~m~~l  292 (305)
T 3m6n_A          245 -TPHAWAAMQQVREMTTAVPLEEMMRITEIWVDTAMQLGEKSLRTMDRL  292 (305)
T ss_dssp             -CHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             -ChHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence             899999999999999999999999999999999999998876655543

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=100.00  E-value=6.6e-41  Score=273.46  Aligned_cols=165  Identities=17%  Similarity=0.114  Sum_probs=152.9

Q ss_pred             CCCccCchhhhhhh-------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEE
Q psy5402           2 TNNPTDLINEDTDT-------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQAT   74 (198)
Q Consensus         2 ~s~G~Dl~~~~~~~-------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~   74 (198)
                      ||+|.|++++....       ...+++++.++.++||||||+|||+|+|||++|+++||+||++++            ++
T Consensus        60 F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~------------a~  127 (233)
T 3r6h_A           60 FSGGFDLKVLTSGEAKPAIDMLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHA------------YN  127 (233)
T ss_dssp             EECCSCHHHHC---CHHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTSSEEEECTT------------CC
T ss_pred             ccCCcChHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEECCcchHHHHHHHHhCCEEEEeCC------------cE
Confidence            89999999985431       234567889999999999999999999999999999999999999            99


Q ss_pred             EecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHH
Q psy5402          75 FHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIF  154 (198)
Q Consensus        75 ~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~  154 (198)
                      |++||+++|++|++++++++++++|..+|++++++|++++|+||+++||||+|+|++++.+++.++++++++.||.+++.
T Consensus       128 f~~pe~~~Gl~~~~~g~~~l~~~~g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~  207 (233)
T 3r6h_A          128 VQANEVAIGMTIPYAAMEVLKLRLTPSAYQQAAGLAKTFFGETALAAGFIDEISLPEVVLSRAEEAAREFAGLNQQAHNA  207 (233)
T ss_dssp             EECCGGGGTCCCCHHHHHHHHHHSCHHHHHHHHHSCCEECHHHHHHHTSCSEECCGGGHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             EECchhhhCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999998889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhchhhhcHHHHHHHHHHHH
Q psy5402         155 AKQLVRVPMLSMLHEANKRECKRL  178 (198)
Q Consensus       155 ~K~~l~~~~~~~~~~~~~~e~~~~  178 (198)
                      +|+.++.....++++.++.|..++
T Consensus       208 ~K~~l~~~~~~~l~~~l~~e~~~f  231 (233)
T 3r6h_A          208 TKLRARAEALKAIRAGIDGIEAEF  231 (233)
T ss_dssp             HHHHTTHHHHHHHHHHHHTSHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHh
Confidence            999999998888999888887654

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=100.00  E-value=1.7e-40  Score=270.83  Aligned_cols=166  Identities=17%  Similarity=0.153  Sum_probs=152.8

Q ss_pred             CCCccCchhhhhhh------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEE
Q psy5402           2 TNNPTDLINEDTDT------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATF   75 (198)
Q Consensus         2 ~s~G~Dl~~~~~~~------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~   75 (198)
                      ||+|.|++++....      ...+++++.++.++||||||+|||+|+|||++|+++||+||+++++           ++|
T Consensus        60 F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~~-----------a~f  128 (232)
T 3ot6_A           60 LSGGYDLKVMTSSAEAAINLVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGP-----------FSI  128 (232)
T ss_dssp             EECCBCHHHHHHCHHHHHHHHHHHHHHHHHHHTCSSCEEEECCEEEETHHHHHHTTSSEEEEECSS-----------CCE
T ss_pred             ccCCcCHHHHhhChHHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHHCCEEEEeCCC-----------cEE
Confidence            89999999985422      2345678899999999999999999999999999999999999962           699


Q ss_pred             ecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHH
Q psy5402          76 HTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFA  155 (198)
Q Consensus        76 ~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~  155 (198)
                      ++||+++|++|++++++++++++|..+|++++++|++++|+||+++||||+|+|++++.+++.++++++++.||.+++.+
T Consensus       129 ~~pe~~~Gl~p~~~g~~~l~~~ig~~~a~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~  208 (232)
T 3ot6_A          129 GLNEVQIGMTMHHAGIELARDRLRKSAFNRSVINAEMFDPEGAMAAGFLDKVVSVEELQGAALAVAAQLKKINMNAHKKT  208 (232)
T ss_dssp             ECCTTTTTCCCCHHHHHHHHHHSCHHHHHHHHTSCCEECHHHHHHHTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             ECcccccCCCCchhHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCCCEecCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999998888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhchhhhcHHHHHHHHHHHH
Q psy5402         156 KQLVRVPMLSMLHEANKRECKRL  178 (198)
Q Consensus       156 K~~l~~~~~~~~~~~~~~e~~~~  178 (198)
                      |+.++.....++++.++.|.+.+
T Consensus       209 K~~l~~~~~~~l~~~l~~E~~~~  231 (232)
T 3ot6_A          209 KLKVRKGLLDTLDAAIEQDRQHM  231 (232)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhHhHHHHHHHHHHHhc
Confidence            99999998888999988887653

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=100.00  E-value=4.7e-39  Score=266.04  Aligned_cols=173  Identities=24%  Similarity=0.403  Sum_probs=153.7

Q ss_pred             CCCCccCchhhhhhh-------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceE
Q psy5402           1 MTNNPTDLINEDTDT-------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA   73 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~-------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a   73 (198)
                      .||+|.|++++....       ...+++++.++.++||||||+|||+|+| |++|+++||+||++++            +
T Consensus        72 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G-G~~LalacD~ria~~~------------a  138 (257)
T 1szo_A           72 SFCNEIDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVTN-APEIPVMSDIVLAAES------------A  138 (257)
T ss_dssp             BSBCEECGGGSCCSSHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCBCS-STHHHHTSSEEEEETT------------C
T ss_pred             ccccCcCchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCchHH-HHHHHHHCCEEEEeCC------------C
Confidence            389999999874311       1234577889999999999999999995 9999999999999999            9


Q ss_pred             EEec-ccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHH
Q psy5402          74 TFHT-PFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSM  152 (198)
Q Consensus        74 ~~~~-pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~  152 (198)
                      +|++ ||+++|++|++|+++++++++|..+|++++++|+.++|+||+++||||+|+|++++.+++.+++++++..||.++
T Consensus       139 ~f~~~pe~~lGl~p~~g~~~~l~r~vG~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~  218 (257)
T 1szo_A          139 TFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEKPLLAR  218 (257)
T ss_dssp             EEECTTSGGGTCCCTTTHHHHHHHHHCHHHHHHHHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             EEecCcccccccCCCccHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHHhCCHHHH
Confidence            9999 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc
Q psy5402         153 IFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNR  197 (198)
Q Consensus       153 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~k  197 (198)
                      +.+|+.++.....++++.++.|...           +++.+|-.|
T Consensus       219 ~~~K~~l~~~~~~~l~~~l~~~~~~-----------eg~~a~~~~  252 (257)
T 1szo_A          219 RYARKVLTRQLRRVMEADLSLGLAH-----------EALAAIDLG  252 (257)
T ss_dssp             HHHHHHHSHHHHHHHHHHHHHHHHH-----------HHHHHHHHC
T ss_pred             HHHHHHHHhhhhccHHHHHHHHHHH-----------hhhhhhhcc
Confidence            9999999998777777776665432           567776543

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*

Probab=100.00  E-value=1.2e-39  Score=286.36  Aligned_cols=181  Identities=19%  Similarity=0.240  Sum_probs=154.2

Q ss_pred             CCCCccCchhhhhhh----H-------HHHHHHHHHH------------hcCCCcEEEEEcCccchHHHHHhhhcCEEEe
Q psy5402           1 MTNNPTDLINEDTDT----S-------ITLQKYVAAF------------IDYPKPLIAIVNGPAIGISATTLALCDIVFA   57 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~----~-------~~~~~~~~~i------------~~~~kp~IA~v~G~a~GgG~~lalacD~~ia   57 (198)
                      .||+|.|++++....    .       ..+++++..+            .++||||||+|||+|+|||++|+++||+||+
T Consensus       232 ~FcAG~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~pkPvIAAVnG~A~GGG~eLALaCDirIA  311 (440)
T 2np9_A          232 VFSAGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLA  311 (440)
T ss_dssp             CCBCCBCHHHHHTTCCCTTTTHHHHHHTHHHHHHHCEECCSCSTTTTTCCEECCCEEEEECSEEETHHHHHGGGCSEEEE
T ss_pred             cccCCcchhhhhccCcchhhhhhHHHHHHHHHHHHHHHhhcccchhhhhhcCCCCEEEEECCcccccchHHHhhCCEEEE
Confidence            489999999875321    0       1244555554            4799999999999999999999999999999


Q ss_pred             ecCCcccCCCcccceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHH
Q psy5402          58 SDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDL  137 (198)
Q Consensus        58 ~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a  137 (198)
                      +++            ++|++||+++|++|++| +++|++++|..+|++++++|+.|+|+||+++||||+|||++++.+++
T Consensus       312 ae~------------A~Fglpev~lGl~P~~g-~~~L~rlvG~~~A~ellLtG~~i~A~EA~~~GLV~~Vvp~~eL~~~a  378 (440)
T 2np9_A          312 SSD------------AYFSLPAAKEGIIPGAA-NLRLGRFAGPRVSRQVILEGRRIWAKEPEARLLVDEVVEPDELDAAI  378 (440)
T ss_dssp             ETT------------CEEECCCTTTCCCCTTH-HHHHHHHHHHHHHHHHHHHCCCEETTSGGGGGTCSEEECHHHHHHHH
T ss_pred             cCC------------CEEECchhccCcCcchH-HHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecChHHHHHHH
Confidence            999            99999999999999887 57999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhchhhhcHH---HHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         138 WPRIHAWAKLPPQSMIFAKQLVRVPMLSMLH---EANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       138 ~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~---~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      .+++++++   +.+++.+|++++.... +++   +.++.|...+..++.++|++|++.+|++||
T Consensus       379 ~~~A~~la---~~Av~~~K~~l~~~~~-~~~~~~~~l~~e~~~~~~~~~s~D~~Egv~AFleKR  438 (440)
T 2np9_A          379 ERSLTRLD---GDAVLANRRMLNLADE-SPDGFRAYMAEFALMQALRLYGHDVIDKVGRFGGRP  438 (440)
T ss_dssp             HHHHHTTC---SHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTCC---
T ss_pred             HHHHHHhC---HHHHHHHHHHHHhhhc-chhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhCC
Confidence            99988764   5899999999987644 333   455666677888899999999999999997

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=100.00  E-value=1.1e-38  Score=296.19  Aligned_cols=185  Identities=22%  Similarity=0.254  Sum_probs=170.1

Q ss_pred             CCCCccCchhhhhhh-HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEeccc
Q psy5402           1 MTNNPTDLINEDTDT-SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPF   79 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~-~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe   79 (198)
                      .||+|.||+++.... ...+++++.+|.++||||||+|||+|+|||++|+++||+|||+++            ++|++||
T Consensus        76 ~F~aGaDl~~~~~~~~~~~~~~~~~~i~~~~kPvIAai~G~a~GGG~elalacD~ria~~~------------a~fg~pe  143 (742)
T 3zwc_A           76 NFCAGADIHGFSAFTPGLALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAK------------ARVGLPE  143 (742)
T ss_dssp             CSBCCBCSSSCCSSCSCSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHTSSEEEEETT------------CEEECGG
T ss_pred             ccccCcChHhhhccChhHHHHHHHHHHHhCCCCEEEEECccchHHHHHHHHhcCEEEEcCC------------CEEECcc
Confidence            389999999986543 346788999999999999999999999999999999999999999            9999999


Q ss_pred             ccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCH----------
Q psy5402          80 TLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP----------  149 (198)
Q Consensus        80 ~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~----------  149 (198)
                      +++|++|++|++++|+|++|..+|++++++|+.++|+||+++||||+|+|++. .+++.++|++++..++          
T Consensus       144 v~lGl~Pg~ggt~rL~rlvG~~~A~~l~ltG~~i~a~eA~~~GLv~~vv~~d~-~~~A~~~A~~ia~~~~~~~~~~~~~~  222 (742)
T 3zwc_A          144 VTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSDP-VEEAIKFAQKIIDKPIEPRRIFNKPV  222 (742)
T ss_dssp             GGGTCCCTTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEESSCH-HHHHHHHHHHHTTSCSGGGCGGGSCC
T ss_pred             cCcccCCCccHHHHHHHhhhHHHHHHHHHcCCchhHHHHHHcCCccEecCchh-hHHHHHHHHHHhcCCchhhhhhcccc
Confidence            99999999999999999999999999999999999999999999999999765 5678999999998775          


Q ss_pred             ------------------------HHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         150 ------------------------QSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       150 ------------------------~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                                              .+...+++.++.....+++++++.|.+.|.+++.+++.++++++|+++|
T Consensus       223 ~~~~~~~~~~~~~~~~~~k~~~~~~A~~~~~~~v~~~~~~~~~~gl~~E~~~F~~l~~s~~~k~~~~aFf~~r  295 (742)
T 3zwc_A          223 PSLPNMDSVFAEAIAKVRKQYPGVLAPETCVRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEK  295 (742)
T ss_dssp             CCCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred             cccchhhhhHHHHHHHHhhhccchhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence                                    3666778888888888999999999999999999999999999998754

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=100.00  E-value=2.2e-38  Score=270.88  Aligned_cols=132  Identities=19%  Similarity=0.283  Sum_probs=125.1

Q ss_pred             HHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhhHHHHH
Q psy5402          18 TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRI   97 (198)
Q Consensus        18 ~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~   97 (198)
                      .+.+++.+|.++||||||+|||+|+|||++|+++||+|||+++            ++|++||+++|++|++|   +++++
T Consensus       145 ~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~rias~~------------a~f~~pe~~lG~~P~~g---~l~~~  209 (333)
T 3njd_A          145 RFVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAAD------------AKIGYPPMRVWGVPAAG---LWAHR  209 (333)
T ss_dssp             HHHHHHTHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEECTT------------CEEECGGGGTTCCCTTC---CHHHH
T ss_pred             HHHHHHHHHHhCCCCEEEEECCEEeHHHHHHHHhCCEEEECCC------------CeeechhhceeccCHHH---HHHHH
Confidence            3456678899999999999999999999999999999999999            99999999999999876   47899


Q ss_pred             hcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHHHHHhhchhh
Q psy5402          98 FGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPML  164 (198)
Q Consensus        98 vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~  164 (198)
                      +|..+|++++++|+.|+|+||+++||||+|||++++.+++.+++++|+..||.+++.+|+.++....
T Consensus       210 vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~ia~~~~~al~~~K~~l~~~~~  276 (333)
T 3njd_A          210 LGDQRAKRLLFTGDCITGAQAAEWGLAVEAPDPADLDARTERLVERIAAMPVNQLIMAKLACNTALL  276 (333)
T ss_dssp             HCHHHHHHHHTTCCEEEHHHHHHTTSSSBCCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHHCCCccEecChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999998754

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=100.00  E-value=3.4e-38  Score=292.83  Aligned_cols=186  Identities=19%  Similarity=0.197  Sum_probs=167.7

Q ss_pred             CCCCccCchhhhhh---h-------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCccc
Q psy5402           1 MTNNPTDLINEDTD---T-------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFV   70 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~---~-------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~   70 (198)
                      .||+|.|++++...   .       ...+++++.+|.++||||||+|||+|+|||++|+++||+|||+++          
T Consensus        64 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~----------  133 (715)
T 1wdk_A           64 VFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADS----------  133 (715)
T ss_dssp             SSBBCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETT----------
T ss_pred             eEeCCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEeCC----------
Confidence            48999999988531   1       124677889999999999999999999999999999999999999          


Q ss_pred             ceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcC--C
Q psy5402          71 LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL--P  148 (198)
Q Consensus        71 ~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~--~  148 (198)
                        ++|++||+++|++|++|++++|+|++|..+|++++++|+.++|+||+++||||+|+|++++.+++.+++++++..  |
T Consensus       134 --a~fglpev~lGl~P~~ggt~~L~r~vG~~~A~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~  211 (715)
T 1wdk_A          134 --AKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELD  211 (715)
T ss_dssp             --CEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSC
T ss_pred             --CEEeChhhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHhhccCC
Confidence              999999999999999999999999999999999999999999999999999999999999999999999999876  4


Q ss_pred             ----------HH---------HH------------------HHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHH
Q psy5402         149 ----------PQ---------SM------------------IFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAI  191 (198)
Q Consensus       149 ----------~~---------a~------------------~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~  191 (198)
                                |.         ++                  ..+|+.++.....++++.++.|.+.+..++.+++.++++
T Consensus       212 ~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~~~~g~~~A~~~~k~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~  291 (715)
T 1wdk_A          212 YKAKRQPKLEKLKLNAIEQMMAFETAKGFVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLI  291 (715)
T ss_dssp             HHHHHGGGGSCCSCCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred             cchhcccccCccccCchhHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhHHHHH
Confidence                      32         24                  345677777777788999999999999999999999999


Q ss_pred             HHHHccC
Q psy5402         192 TAFFNRK  198 (198)
Q Consensus       192 ~af~~kr  198 (198)
                      .+|++||
T Consensus       292 ~aF~~kr  298 (715)
T 1wdk_A          292 GLFLNDQ  298 (715)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhhh
Confidence            9999875

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=100.00  E-value=1.2e-38  Score=296.26  Aligned_cols=186  Identities=17%  Similarity=0.219  Sum_probs=164.6

Q ss_pred             CCCCccCchhhhhhh----------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCccc
Q psy5402           1 MTNNPTDLINEDTDT----------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFV   70 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~----------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~   70 (198)
                      .||+|.|++++....          ...+++++.+|.++||||||+|||+|+|||++|+++||+|||+++          
T Consensus        63 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~----------  132 (725)
T 2wtb_A           63 RFSGGFDISGFGEMQKGNVKEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPA----------  132 (725)
T ss_dssp             CCBCSSCC------------CCSSSHHHHHCCCCCCCTSSSCEEEEECSEEETHHHHHHHHSSEEEECTT----------
T ss_pred             cccCCcCHHHHhcccchhhhhHHHHHHHHHHHHHHHHhCcCcEEEEECCccCcccHHHHHhCCEEEEcCC----------
Confidence            489999999874321          124556677888999999999999999999999999999999999          


Q ss_pred             ceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcC--C
Q psy5402          71 LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL--P  148 (198)
Q Consensus        71 ~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~--~  148 (198)
                        ++|++||+++|++|++|++++|+|++|..+|++++++|+.++|+||+++||||+|+|++++.+++.+++++++..  |
T Consensus       133 --a~fglpev~lGl~P~~Ggt~~L~rlvG~~~A~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~p  210 (725)
T 2wtb_A          133 --AQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIVGRRKP  210 (725)
T ss_dssp             --CEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEECCTTTHHHHHHHHHHHHHTTSSC
T ss_pred             --CEEeCchhccCCCCCccHHHHHHHhcCHHHHHHHHHcCCCCCHHHHHHCCccceEcChhHHHHHHHHHHHHHHhcCCC
Confidence              999999999999999999999999999999999999999999999999999999999999999999999999876  4


Q ss_pred             HH-HH---------------------------------HHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy5402         149 PQ-SM---------------------------------IFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAF  194 (198)
Q Consensus       149 ~~-a~---------------------------------~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af  194 (198)
                      +. ++                                 ..+|+.++.....++++.++.|.+.+..++.+++.++++.+|
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~g~pA~~~~k~~~~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF  290 (725)
T 2wtb_A          211 WVSSVSKTDKLPPLGEAREILTFAKAQTLKRAPNMKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVF  290 (725)
T ss_dssp             CCCGGGCCTTSCCHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhhhhhhccccCccchHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcchhHHHHHHHh
Confidence            43 22                                 478999988877889999999999999999999999999999


Q ss_pred             HccC
Q psy5402         195 FNRK  198 (198)
Q Consensus       195 ~~kr  198 (198)
                      ++||
T Consensus       291 ~~kr  294 (725)
T 2wtb_A          291 FSQR  294 (725)
T ss_dssp             HHHH
T ss_pred             hhhh
Confidence            9875

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=100.00  E-value=2.5e-37  Score=258.43  Aligned_cols=163  Identities=25%  Similarity=0.291  Sum_probs=138.4

Q ss_pred             CCCCccCchhhhhhh------------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCc
Q psy5402           1 MTNNPTDLINEDTDT------------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPV   68 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~------------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~   68 (198)
                      .||+|.|++++....            ...+.+++.++.++||||||+|||+|+|||++|+++||+||++++        
T Consensus        76 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~--------  147 (279)
T 3t3w_A           76 HFSAGHDLRGGGPVPDKLTLEFIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAED--------  147 (279)
T ss_dssp             CSBCCBCCC--------CCHHHHHHHHHHHTHHHHHHHHHCSSCEEEEECSEEEGGGHHHHTTSSEEEEETT--------
T ss_pred             ceeeccChHhhhhcccccchHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeEhHHHHHHHHhCCEEEecCC--------
Confidence            489999999875431            123456778999999999999999999999999999999999999        


Q ss_pred             ccceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCC
Q psy5402          69 FVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLP  148 (198)
Q Consensus        69 ~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~  148 (198)
                          ++|++||+++|+. +.++.. +++++|..+|++++++|++++|+||+++||||+|+|++++.+++.+++++++..|
T Consensus       148 ----a~f~~pe~~~Gl~-~~~~~~-~~~~vG~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~  221 (279)
T 3t3w_A          148 ----ALFSDPVVLMDIG-GVEYHG-HTWELGPRKAKEILFTGRAMTAEEVAQTGMVNRVVPRDRLDAETRALAGEIAKMP  221 (279)
T ss_dssp             ----CEEECCGGGGTCS-SCSSCC-HHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSC
T ss_pred             ----CEEeCcHHhcCCC-CchHHH-HHhhcCHHHHHHHHHcCCccCHHHHHHCCCCcEeeChHHHHHHHHHHHHHHHcCC
Confidence                9999999999994 444443 4899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhchhhh-cHHHHHHHHHHH
Q psy5402         149 PQSMIFAKQLVRVPMLS-MLHEANKRECKR  177 (198)
Q Consensus       149 ~~a~~~~K~~l~~~~~~-~~~~~~~~e~~~  177 (198)
                      |.+++.+|+.++..... .+++.++.+...
T Consensus       222 ~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~  251 (279)
T 3t3w_A          222 PFALRQAKRAVNQTLDVQGFYAAIQSVFDI  251 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhcccHHHHHHHHhhH
Confidence            99999999999987543 566655555443

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=99.98  E-value=1.7e-33  Score=250.60  Aligned_cols=150  Identities=13%  Similarity=0.116  Sum_probs=135.2

Q ss_pred             CCCCccCchhhhhhh-------HHHHHHHHHHH----hcCCCcEEEEEcCccchHHHHHhhhcCEEEeecC-CcccCCCc
Q psy5402           1 MTNNPTDLINEDTDT-------SITLQKYVAAF----IDYPKPLIAIVNGPAIGISATTLALCDIVFASDT-AILLNHPV   68 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~-------~~~~~~~~~~i----~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~-~~~~~~~~   68 (198)
                      .||+|.|++++....       ...+++++.+|    .++||||||+|||+|+|||++|+++||+||++++ +       
T Consensus        89 ~FcAGaDL~el~~~~~~~~~~~~~~~~~l~~~L~~a~~~~pKPVIAAVnG~AlGGGleLALACD~rIAse~~~-------  161 (556)
T 2w3p_A           89 VFCSGANIFMLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRS-------  161 (556)
T ss_dssp             EEECEECHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECSEEETHHHHHHHHSSEEEEECSSS-------
T ss_pred             cccCCcCHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCeechhhHHHHHhCCEEEEcCCCC-------
Confidence            389999999875421       13456778888    9999999999999999999999999999999987 3       


Q ss_pred             ccceEEEeccccc-ccccCCchhhhHHH--HHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHh
Q psy5402          69 FVLQATFHTPFTL-RGMTPEGCSSVLFP--RIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWA  145 (198)
Q Consensus        69 ~~~~a~~~~pe~~-~Gi~p~~g~~~~l~--~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la  145 (198)
                          ++|++||++ +|++|++|++++++  +++|..+|++++++|+.++|+||+++||||+|+|++++.+.+.+++++++
T Consensus       162 ----A~FglPEv~~LGL~Pg~Ggt~rLp~~RlVG~~rA~eLlLTGr~isA~EAl~lGLVdeVVp~~eL~~~A~~lA~~LA  237 (556)
T 2w3p_A          162 ----SSVSLPEVPLLGVLPGTGGLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVKPNQFDQAIQARALELA  237 (556)
T ss_dssp             ----CEEECCHHHHHSSCCTTTHHHHHHHTSCCCHHHHHHHTTCSSCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHH
T ss_pred             ----cEEecccccccCCCCCccHHHHHHhhccCCHHHHHHHHHcCCCCCHHHHHHCCCceEEeChhHHHHHHHHHHHHHH
Confidence                899999999 99999999999999  99999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHhhch
Q psy5402         146 KLPPQSMIFAKQLVRVP  162 (198)
Q Consensus       146 ~~~~~a~~~~K~~l~~~  162 (198)
                      ..||.++.. |..++..
T Consensus       238 ~~~p~Av~~-K~l~~~~  253 (556)
T 2w3p_A          238 AQSDRPAHA-QGVPLTR  253 (556)
T ss_dssp             TTCCCCTTC-CCCCCCC
T ss_pred             cCChHHHhh-hhhhcch
Confidence            999999874 6654443

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.76  E-value=3.8e-19  Score=162.02  Aligned_cols=123  Identities=12%  Similarity=0.081  Sum_probs=102.2

Q ss_pred             CCccCchhhhhhhHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccc--
Q psy5402           3 NNPTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFT--   80 (198)
Q Consensus         3 s~G~Dl~~~~~~~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~--   80 (198)
                      |.|+|+...     ..+++.+.++..++|||||+|+|.|.|||+.|+++||+|||+++            +.|+.+++  
T Consensus       349 spGG~~~~~-----~~i~~~i~~l~~~~kPVia~v~g~AasgG~~iA~aaD~iva~p~------------a~~Gsigv~~  411 (593)
T 3bf0_A          349 SPGGSVTAS-----EVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPS------------TLTGSIGIFG  411 (593)
T ss_dssp             EEEECHHHH-----HHHHHHHHHHHHTTCCEEEEEEEEEETHHHHTTTTCSEEEECTT------------CEEECCCEEE
T ss_pred             CCCCCHHHH-----HHHHHHHHHHHhCCCCEEEEECCChHHHHHHHHHhCCEEEECCC------------CEeecceeEE
Confidence            456666542     34677788889999999999999999999999999999999999            89998874  


Q ss_pred             ----------cccccCCc-------------hhh---------------hHHHHHhcHHH-----HHHHHhcCCCCCHHH
Q psy5402          81 ----------LRGMTPEG-------------CSS---------------VLFPRIFGNSV-----ASELLYTGRKLNAQE  117 (198)
Q Consensus        81 ----------~~Gi~p~~-------------g~~---------------~~l~~~vG~~~-----a~~lll~g~~~~a~e  117 (198)
                                ++|+.|..             +.+               ..|.+.++..+     +.+++++|+.++|+|
T Consensus       412 ~~~~~~~~~~klGi~~~~~~~g~~k~~~~~~~~t~~~~~~l~~~l~~~~~~f~~~V~~~Rg~~~~a~~~l~~G~~~ta~e  491 (593)
T 3bf0_A          412 VITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQD  491 (593)
T ss_dssp             EEEECHHHHHHTTCEEECCBSCGGGCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHTTCTTCEEEHHH
T ss_pred             ecCchHHHHHhcCceeeeeecccccccCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCcCHHH
Confidence                      58887643             122               56778888888     899999999999999


Q ss_pred             HHhcCCcccccCchhHHHHHHHHHH
Q psy5402         118 ALQYGFVSGVFTTEEIERDLWPRIH  142 (198)
Q Consensus       118 A~~~Glv~~v~~~~~l~~~a~~~a~  142 (198)
                      |+++||||++++.+++.+.+.+++.
T Consensus       492 A~~~GLVD~v~~~~~~~~~a~~~a~  516 (593)
T 3bf0_A          492 AKANGLVDSLGDFDDAVAKAAELAK  516 (593)
T ss_dssp             HHHHTSCSEECCHHHHHHHHHHHSC
T ss_pred             HHHCCCCcCccCHHHHHHHHHHHcC
Confidence            9999999999998888777666543

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=99.75  E-value=2.7e-18  Score=140.24  Aligned_cols=121  Identities=12%  Similarity=0.078  Sum_probs=93.0

Q ss_pred             CCccCchhhhhhhHHHHHHHHHHHhc-CCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecc---
Q psy5402           3 NNPTDLINEDTDTSITLQKYVAAFID-YPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTP---   78 (198)
Q Consensus         3 s~G~Dl~~~~~~~~~~~~~~~~~i~~-~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~p---   78 (198)
                      |.|+|+...     ..+.+.+.++.. ++|||||+++|.|.|||+.|+++||++|++++            +.|+++   
T Consensus        56 s~Gg~~~~~-----~~i~~~l~~~~~~~~kPVia~v~g~a~~gG~~lA~a~D~i~a~~~------------a~~g~~Gv~  118 (240)
T 3rst_A           56 SPGGGVYES-----AEIHKKLEEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPE------------TLTGSLGVI  118 (240)
T ss_dssp             ECCBCHHHH-----HHHHHHHHHHHHHHCCCEEEEEEEEEETHHHHHHTTSSEEEECTT------------CEEECCCCE
T ss_pred             CCCCCHHHH-----HHHHHHHHHHHHhCCCeEEEEECCeehHhHHHHHHhCCeeEECCC------------CeEecccee
Confidence            456666542     346667777877 89999999999999999999999999999999            999999   


Q ss_pred             ------------------cccccccCCchhh--------------------------hHHHHHhcHHHHHHHHhcCCCCC
Q psy5402          79 ------------------FTLRGMTPEGCSS--------------------------VLFPRIFGNSVASELLYTGRKLN  114 (198)
Q Consensus        79 ------------------e~~~Gi~p~~g~~--------------------------~~l~~~vG~~~a~~lll~g~~~~  114 (198)
                                        +.+.|-.+..+..                          ..-.|.++.....+ +++|+.++
T Consensus       119 ~~~~~~~~~l~k~Gi~~~~~~~G~~k~~~~p~~~~s~~~~~~~~~~l~~~~~~f~~~Va~~R~l~~~~~~~-~~~g~~~~  197 (240)
T 3rst_A          119 MESVNYSKLADKLGISFETIKSGAHADIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRGMPKAEVKK-IADGRVYD  197 (240)
T ss_dssp             EEEEECHHHHHHHTCEEEEEESSTTTTTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHH-HCSSCEEE
T ss_pred             eEecCHHHHHHHcCCeEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH-HhcCCccc
Confidence                              5566766655421                          12223344444444 78999999


Q ss_pred             HHHHHhcCCcccccCchhHHHHHHHHH
Q psy5402         115 AQEALQYGFVSGVFTTEEIERDLWPRI  141 (198)
Q Consensus       115 a~eA~~~Glv~~v~~~~~l~~~a~~~a  141 (198)
                      +++|+++||||++.+.+++.+.+.+++
T Consensus       198 a~~A~~~GLVD~i~~~~~~~~~~~~~~  224 (240)
T 3rst_A          198 GRQAKKLNLVDELGFYDDTITAMKKDH  224 (240)
T ss_dssp             HHHHHHTTSSSEECCHHHHHHHHHHHC
T ss_pred             HHHHHHcCCCcccCCHHHHHHHHHHHh
Confidence            999999999999998887776665554

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A

Probab=99.74  E-value=7.6e-18  Score=136.62  Aligned_cols=100  Identities=17%  Similarity=0.213  Sum_probs=85.9

Q ss_pred             HHHHHHHHHhcCCCcEEEEE---cCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhh---
Q psy5402          18 TLQKYVAAFIDYPKPLIAIV---NGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSS---   91 (198)
Q Consensus        18 ~~~~~~~~i~~~~kp~IA~v---~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~---   91 (198)
                      ....+++.|..+|||||+.|   +|.|.|+|+.|+++||++++.++            ++|+.++...+. |..|.+   
T Consensus        55 ~~~~i~~~i~~~~~PVia~v~p~~G~AasaG~~ia~a~d~~~a~p~------------a~ig~~~p~~~~-~~~G~~~~~  121 (230)
T 3viv_A           55 AMMNIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPG------------TSIGACRPILGY-SQNGSIIEA  121 (230)
T ss_dssp             HHHHHHHHHHTCSSCEEEEECSTTCEEETHHHHHHHTSSEEEECTT------------CEEECCCEEEEE-CTTSCEEEC
T ss_pred             HHHHHHHHHHhCCCCEEEEEecCCCEEhHHHHHHHHhcCceeECCC------------CEEEeccceecC-CCCCCchHH
Confidence            34678888999999999999   99999999999999999999999            999999987533 433432   


Q ss_pred             ------------hHHHHHhcH--HHHHHHHhcCCCCCHHHHHhcCCcccccCc
Q psy5402          92 ------------VLFPRIFGN--SVASELLYTGRKLNAQEALQYGFVSGVFTT  130 (198)
Q Consensus        92 ------------~~l~~~vG~--~~a~~lll~g~~~~a~eA~~~Glv~~v~~~  130 (198)
                                  ..+++..|.  ..+.+++.+++.++|+||+++||||+|+++
T Consensus       122 ~~k~~~~~~~~~~~la~~~Gr~~~~a~~~~~~~~~ltA~EAle~GliD~V~~~  174 (230)
T 3viv_A          122 PPAITNYFIAYIKSLAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARD  174 (230)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTCCEECHHHHHHTTSCSEECSS
T ss_pred             HHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhcCCeecHHHHHHcCCceEecCC
Confidence                        136677785  789999999999999999999999999975

>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.60  E-value=1.3e-15  Score=129.84  Aligned_cols=106  Identities=15%  Similarity=0.200  Sum_probs=85.8

Q ss_pred             CCccCchhhh--hhhHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccc
Q psy5402           3 NNPTDLINED--TDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFT   80 (198)
Q Consensus         3 s~G~Dl~~~~--~~~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~   80 (198)
                      |.|..+.+-.  ......+.+++.++.++++|+|++|+|.|.|||+.++++||++||.++            ++|++   
T Consensus       183 t~Ga~~g~~aE~~g~~~~~a~~l~al~~~~vPvIavV~G~a~GGGa~~~~~~D~via~p~------------A~~~v---  247 (339)
T 2f9y_A          183 TPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIGVGDKVNMLQY------------STYSV---  247 (339)
T ss_dssp             ESCSCCSHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEEEEEHHHHHTTCCCSEEEECTT------------CEEES---
T ss_pred             CCCCccchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCcCcHHHHHHhccCeeeecCC------------CEEEe---
Confidence            3455544322  223445677888999999999999999999999999999999999999            99986   


Q ss_pred             cccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCc
Q psy5402          81 LRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTT  130 (198)
Q Consensus        81 ~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~  130 (198)
                         +.|.++++.++.+..+...|.++    +.++|++|+++|+||+|+|.
T Consensus       248 ---~~Peg~asil~~~~~~~~~Aae~----~~itA~~a~~~GlVd~VV~e  290 (339)
T 2f9y_A          248 ---ISPEGCASILWKSADKAPLAAEA----MGIIRPRLKELKLIDSIIPE  290 (339)
T ss_dssp             ---SCHHHHHHHHSSCSTTHHHHHHH----HTCSHHHHHTTTSCSCCCCC
T ss_pred             ---eccchHHHHHHHhhccHHHHHHH----cCCCHHHHHHcCCeeEEecC
Confidence               46777777766666666777777    67999999999999999984

>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=99.60  E-value=1.7e-15  Score=128.69  Aligned_cols=116  Identities=20%  Similarity=0.340  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhhHHH
Q psy5402          16 SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFP   95 (198)
Q Consensus        16 ~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~   95 (198)
                      ...+.+++.++.++++|+|++|+|.|.|||+.++++||++||.++            ++|++      +.|.+++..++.
T Consensus       184 ~~~~a~~l~al~~~~vPvIavV~G~a~GGGa~~~~~~D~via~~~------------A~~~v------~~peg~a~il~~  245 (327)
T 2f9i_A          184 SESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLEN------------STYSV------ISPEGAAALLWK  245 (327)
T ss_dssp             HHHHHHHHHHHHTCSSCEEEEEEEEEBHHHHHTTCCCSEEEEETT------------CBCBS------SCHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEECCcChHHHHHHHCCCEEEEcCC------------ceEee------cCchHHHHHHHH
Confidence            456677888999999999999999999999999999999999999            88885      345555555444


Q ss_pred             HHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCch-------------hHHHHHHHHHHHHhcCCHHHHH
Q psy5402          96 RIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE-------------EIERDLWPRIHAWAKLPPQSMI  153 (198)
Q Consensus        96 ~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~-------------~l~~~a~~~a~~la~~~~~a~~  153 (198)
                      +..+...+.++    +.++|++|+++|+||+|+|..             ++.+...+..+.+...++..+.
T Consensus       246 ~~~~a~~A~e~----~~itA~~a~~~GlVd~VV~ep~gga~~~~~~~~~~lr~~l~~~L~~l~~~~~~~l~  312 (327)
T 2f9i_A          246 DSNLAKIAAET----MKITAHDIKQLGIIDDVISEPLGGAHKDIEQQALAIKSAFVAQLDSLESLSRDEIA  312 (327)
T ss_dssp             CGGGHHHHHHH----HTCBHHHHHHTTSSSEEECCCTTCGGGCHHHHHHHHHHHHHHHHHTTTTCCHHHHH
T ss_pred             HhcchHHHHHH----cCCCHHHHHHcCCceEEecCCCCCCccCHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            44444666666    779999999999999999842             5555555555556566655443

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=99.59  E-value=2e-15  Score=121.50  Aligned_cols=101  Identities=18%  Similarity=0.185  Sum_probs=82.0

Q ss_pred             HHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCE--EEeecCCcccCCCcccceEEEecccccccccCCchh------
Q psy5402          19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDI--VFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCS------   90 (198)
Q Consensus        19 ~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~--~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~------   90 (198)
                      -..+++.|..+++||++.++|.|.++|+.|+++||.  |++.++            ++|++++.. |..+..|.      
T Consensus        92 g~~I~~~i~~~~~pV~t~v~G~AaS~G~~Ia~a~d~g~r~a~p~------------a~igih~p~-~g~~~~G~~~di~~  158 (218)
T 1y7o_A           92 GLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPN------------AEYMIHQPM-GGTGGGTQQTDMAI  158 (218)
T ss_dssp             HHHHHHHHHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTT------------CEEECCCCC---------------
T ss_pred             HHHHHHHHHhcCCCEEEEEccEeHHHHHHHHHcCCcCcEEEcCC------------cEEEEeccc-ccccCcCCHHHHHH
Confidence            455778888899999999999999999999999999  999999            999999987 43332332      


Q ss_pred             ------------hhHHHHHhcH--HHHHHHHhcCCCCCHHHHHhcCCcccccCchh
Q psy5402          91 ------------SVLFPRIFGN--SVASELLYTGRKLNAQEALQYGFVSGVFTTEE  132 (198)
Q Consensus        91 ------------~~~l~~~vG~--~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~  132 (198)
                                  ...+++..|.  ..+.+++.+++.|+|+||+++||||+|+++++
T Consensus       159 ~~~~i~~~~~~~~~~~a~~~G~~~~~i~~~~~~~~~~ta~EA~e~GLVD~v~~~~~  214 (218)
T 1y7o_A          159 APEHLLKTRNTLEKILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIMANNS  214 (218)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHSCCCBCHHHHHHHTSCSEECCCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCCEEcHHHHHHCCCCcEEcCcCC
Confidence                        2456677775  57888999999999999999999999998765

>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.55  E-value=8.5e-15  Score=123.22  Aligned_cols=115  Identities=14%  Similarity=0.150  Sum_probs=95.5

Q ss_pred             CCccCchhhhhhhHHHHHHHHHHHhc---CCCcEEEEEcCccchHH-HHHhhhcCEEEeecCCcccCCCcccceEEEecc
Q psy5402           3 NNPTDLINEDTDTSITLQKYVAAFID---YPKPLIAIVNGPAIGIS-ATTLALCDIVFASDTAILLNHPVFVLQATFHTP   78 (198)
Q Consensus         3 s~G~Dl~~~~~~~~~~~~~~~~~i~~---~~kp~IA~v~G~a~GgG-~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~p   78 (198)
                      |.|.|+++.... ...+.+++.++..   .++|+|++|+|+|+||| +.++++||++|+.++            |+|++.
T Consensus       162 sGGarlqeg~~~-l~~~~~i~~al~~~~~~~vP~IavV~G~~~GGg~a~~a~~~D~via~~~------------A~i~v~  228 (304)
T 2f9y_B          162 SGGARMQEALMS-LMQMAKTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPK------------ALIGFA  228 (304)
T ss_dssp             ESSBCGGGTHHH-HHHHHHHHHHHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTT------------CBEESS
T ss_pred             CCCcCHHHHHHH-HHHHHHHHHHHHHHhcCCCCEEEEEECCCccHHHHHHHhcCCEEEEeCC------------cEEEee
Confidence            568899776432 2345667777655   49999999999999999 677999999999999            999887


Q ss_pred             cccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcC
Q psy5402          79 FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL  147 (198)
Q Consensus        79 e~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~  147 (198)
                                 +...+++.+|..      ++++..+++++.++|+||.|++++++.+.+.+++..+...
T Consensus       229 -----------Gp~~i~~~ig~~------l~~~~~~Ae~~~~~Glvd~Vv~~~el~~~l~~ll~~l~~~  280 (304)
T 2f9y_B          229 -----------GPRVIEQTVREK------LPPGFQRSEFLIEKGAIDMIVRRPEMRLKLASILAKLMNL  280 (304)
T ss_dssp             -----------CHHHHHHHHTSC------CCTTTTBHHHHGGGTCCSEECCHHHHHHHHHHHHHHHTTC
T ss_pred             -----------cHHHHHHHhCcc------CCcccCCHHHHHhcCCccEEeCcHHHHHHHHHHHHHhhcC
Confidence                       345677777753      5689999999999999999999999999999999999865

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=99.28  E-value=2.7e-10  Score=101.74  Aligned_cols=174  Identities=12%  Similarity=0.069  Sum_probs=139.7

Q ss_pred             hhhhhhHHHHHHHHHHHhcCCCcEEEEEc-CccchHH-HHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCC
Q psy5402          10 NEDTDTSITLQKYVAAFIDYPKPLIAIVN-GPAIGIS-ATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPE   87 (198)
Q Consensus        10 ~~~~~~~~~~~~~~~~i~~~~kp~IA~v~-G~a~GgG-~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~   87 (198)
                      |+.++....+++.+.++.-.+.-++|.|+ |.|+.|- ++|+++||..|+-+-. .-+.|.    ..+.+.+.++|.+|.
T Consensus       355 ~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~  429 (556)
T 2w3p_A          355 WFVRETIGLLRRTLARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALP-ANEDEE----PAITLSEVNFGLYPM  429 (556)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSEEEEEECTTCCEEGGGHHHHHTSSEEEECCCT-TCTTTS----CCEECCGGGGTTSCC
T ss_pred             HHHHHHHHHHHHHHHHhcccchhheeeecCCcchHHHHHHHHHHhhhhhhhcCC-CCCCCC----ceeEeeccccCcccC
Confidence            34455566788999999999999999999 9999665 6999999999997410 112233    889999999999998


Q ss_pred             chhhhHHHHHh-cHHHHH--HHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHHHHHhhchhh
Q psy5402          88 GCSSVLFPRIF-GNSVAS--ELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPML  164 (198)
Q Consensus        88 ~g~~~~l~~~v-G~~~a~--~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~  164 (198)
                      ..+..+|.++. |.....  ---..|+++++++|.++|||+...++-+++++++-..++-++.||+++..+...+|....
T Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (556)
T 2w3p_A          430 VTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTASPDDIDWADEIRIALEERAAMSPDALTGLEANLRFNGP  509 (556)
T ss_dssp             TTSSCHHHHHTTTCHHHHHHHHTTTTSCBCHHHHHHTTSSSBCCCTTTHHHHHHHHHHHHHHSCHHHHHHHHHHHSSCSC
T ss_pred             CCchhHHHHHhcCCcchHHHHHHHhCCCCCHHHHHhcCCeecCcccCChHHHHHHHHHHHhccCcchhccchhhcccCCc
Confidence            77766776654 433322  223469999999999999999999999999999999999999999999999999999888


Q ss_pred             hcHHH-HHHHHHHHHHHHhCCHHHH
Q psy5402         165 SMLHE-ANKRECKRLEERWESEEFM  188 (198)
Q Consensus       165 ~~~~~-~~~~e~~~~~~~~~~~~~~  188 (198)
                      ++++. ..-.-..++...|..|+..
T Consensus       510 ~~~~~~~~~~~~~~~~~~~~~~~~~  534 (556)
T 2w3p_A          510 ETMETRIFGRLTAWQNWIFNRPNAV  534 (556)
T ss_dssp             CCHHHHHHTHHHHHHHHHHTSHHHH
T ss_pred             hhhhhHHHHHhHHHHHHhhcCCCCC
Confidence            87765 3455567777888888764

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=99.05  E-value=1.9e-10  Score=91.68  Aligned_cols=105  Identities=21%  Similarity=0.126  Sum_probs=74.0

Q ss_pred             HHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCE--EEeecCCcccCCCcccceEEEecccccccccCC---chh---
Q psy5402          19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDI--VFASDTAILLNHPVFVLQATFHTPFTLRGMTPE---GCS---   90 (198)
Q Consensus        19 ~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~--~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~---~g~---   90 (198)
                      -..+++.|..+++||++.++|.|.++|..++++||.  |++.++            +.++.....-|....   ...   
T Consensus        74 ~~~I~~~i~~~~~pV~~~v~g~AaS~g~~Ia~agd~~~~~a~p~------------a~igih~p~~~~~G~~~d~~~~~~  141 (208)
T 2cby_A           74 GMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPH------------ARILMHQPLGGVTGSAADIAIQAE  141 (208)
T ss_dssp             HHHHHHHHHHCSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTT------------CEEECCCC----------CHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEECcEeHHHHHHHHhCCCcCCEEEcCC------------cEEEEecccccccCCHHHHHHHHH
Confidence            456778888899999999999999999999999998  999999            888877654322110   000   


Q ss_pred             ---------hhHHHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccccCc-hhHHH
Q psy5402          91 ---------SVLFPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGVFTT-EEIER  135 (198)
Q Consensus        91 ---------~~~l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~-~~l~~  135 (198)
                               ...+.+..|  .....+++..++.++++||+++||||++.+. +++.+
T Consensus       142 ~l~~~~~~~~~~~a~~~g~~~~~i~~~~~~~~~~ta~eA~e~GLvD~i~~~~~~ll~  198 (208)
T 2cby_A          142 QFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRAHVNGE  198 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTCEEEHHHHHHHTSCSEECSCC-----
T ss_pred             HHHHHHHHHHHHHHHHhCcCHHHHHHHHhCCcEEcHHHHHHcCCCcEecCchHHHHH
Confidence                     011333334  3345667889999999999999999999864 44443

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1

Probab=98.72  E-value=3e-08  Score=79.38  Aligned_cols=100  Identities=15%  Similarity=0.039  Sum_probs=70.1

Q ss_pred             HHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCE--EEeecCCcccCCCcccceEEEecccccccccC---Cchh---
Q psy5402          19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDI--VFASDTAILLNHPVFVLQATFHTPFTLRGMTP---EGCS---   90 (198)
Q Consensus        19 ~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~--~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p---~~g~---   90 (198)
                      -..+++.|...++||++.+.|.|..+|..++++||.  |++.++            +.+++.....|...   +...   
T Consensus        85 ~~~I~~~i~~~~~pV~t~v~g~AAS~g~~Ia~agd~g~i~a~p~------------s~i~ih~p~~~~~G~~~di~~~~~  152 (215)
T 2f6i_A           85 GLAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPN------------CRIMIHQPLGNAFGHPQDIEIQTK  152 (215)
T ss_dssp             HHHHHHHHHHSSSCEEEEEEEEECHHHHHHHHTSCTTCEEECTT------------CEEESSCTTCSCC--------CHH
T ss_pred             HHHHHHHHHhcCCCEEEEEeeEhHhHHHHHHHcCCcccEEEcCC------------CEEEEeccccccCCchHHHHHHHH
Confidence            456777888899999999999999999999999999  999999            88876654433211   1000   


Q ss_pred             -hh--------HHHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccccCc
Q psy5402          91 -SV--------LFPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGVFTT  130 (198)
Q Consensus        91 -~~--------~l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~  130 (198)
                       ..        .+.+..|  .....+++-.+..|+++||+++||||+|.++
T Consensus       153 el~~~~~~i~~~ya~~~g~~~e~i~~~~~~~~~lta~eA~e~GLiD~I~~~  203 (215)
T 2f6i_A          153 EILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIET  203 (215)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTCEECHHHHHHHTSCSEECCC
T ss_pred             HHHHHHHHHHHHHHHHhCcCHHHHHHHHhCCeecCHHHHHHCCCCCEecCC
Confidence             00        0111112  3344455544566799999999999999864

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A

Probab=98.69  E-value=7.9e-08  Score=76.24  Aligned_cols=101  Identities=19%  Similarity=0.132  Sum_probs=72.4

Q ss_pred             HHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcC--EEEeecCCcccCCCcccceEEEecccccccccCCchhh-----
Q psy5402          19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCD--IVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSS-----   91 (198)
Q Consensus        19 ~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD--~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~-----   91 (198)
                      -..+++.|..+++||++.+.|.|.++|..++++||  .|++.++            ++|.+....-|......-.     
T Consensus        74 ~~~I~~~i~~~~~~V~t~~~G~AaSag~~i~~ag~~g~r~~~p~------------a~imiHqP~~~~~G~a~di~~~a~  141 (203)
T 3qwd_A           74 GFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPN------------AEVMIHQPLGGAQGQATEIEIAAN  141 (203)
T ss_dssp             HHHHHHHHHHSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTT------------CEEECCCCSSSTTTTSCHHHHHHH
T ss_pred             HHHHHHHHHHhcCCcEEEEeeeehhHHHHHHHcCCcCeEEEcCC------------ceEEEecccccccCCHHHHHHHHH
Confidence            45567788888999999999999999999999999  5999999            8888765543321110000     


Q ss_pred             ----------hHHHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccccCch
Q psy5402          92 ----------VLFPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGVFTTE  131 (198)
Q Consensus        92 ----------~~l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~  131 (198)
                                ..+.+..|  .....+++-....++|+||+++||||+|.++.
T Consensus       142 ~l~~~~~~~~~~~a~~tG~~~e~i~~~~~~d~~lta~EA~e~GliD~I~~~~  193 (203)
T 3qwd_A          142 HILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE  193 (203)
T ss_dssp             HHTTHHHHHHHHHHHHHCCCHHHHHHHHTSCCCEEHHHHHHHTSCSEECCCC
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHhhcCceecHHHHHHcCCcCEecCCc
Confidence                      01122222  33445566666779999999999999998754

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=98.67  E-value=2.3e-08  Score=78.66  Aligned_cols=100  Identities=19%  Similarity=0.141  Sum_probs=69.6

Q ss_pred             HHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCE--EEeecCCcccCCCcccceEEEecccccccccCCchhh-----
Q psy5402          19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDI--VFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSS-----   91 (198)
Q Consensus        19 ~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~--~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~-----   91 (198)
                      -..+++.|..+++||++.+.|.|..+|..++++||.  |++.++            +.++......|......-.     
T Consensus        73 ~~~I~~~i~~~~~pV~~~v~g~AaS~g~~Ia~ag~~~~r~a~p~------------s~i~ih~p~~~~~G~~~d~~~~~~  140 (193)
T 1yg6_A           73 GMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPN------------SRVMIHQPLGGYQGQATDIEIHAR  140 (193)
T ss_dssp             HHHHHHHHHHSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTT------------CEEEECCCEEEEEEEHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEEeeeHHHHHHHHHHCCCcCcEEEecC------------cEEEEEeccccccCCHHHHHHHHH
Confidence            455777888899999999999999999999999999  999999            8877655443321100000     


Q ss_pred             ----------hHHHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccccCc
Q psy5402          92 ----------VLFPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGVFTT  130 (198)
Q Consensus        92 ----------~~l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~  130 (198)
                                ..+.+..|  .....+++-.+..|+++||+++||||++.++
T Consensus       141 ~l~~~~~~~~~~~a~~~g~~~~~i~~~~~~~~~~ta~eA~~~GliD~i~~~  191 (193)
T 1yg6_A          141 EILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTH  191 (193)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCHHHHHHHTSSCEEEEHHHHHHHTSSSEECCC
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCeEEcHHHHHHcCCCCEecCC
Confidence                      01112222  2333444444566799999999999999864

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1

Probab=98.57  E-value=1.1e-07  Score=78.55  Aligned_cols=100  Identities=12%  Similarity=0.112  Sum_probs=70.5

Q ss_pred             HHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCE--EEeecCCcccCCCcccceEEEecccccccccCCchhhh----
Q psy5402          19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDI--VFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSV----   92 (198)
Q Consensus        19 ~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~--~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~----   92 (198)
                      -..+++.|...++||++.+.|.|..+|..++++||.  |++.++            +.++.....-|......-..    
T Consensus       129 g~aIyd~I~~~k~pV~t~v~G~AASaG~~Ia~Agd~gkr~a~P~------------S~ImihqP~~g~~G~a~Di~~~a~  196 (277)
T 1tg6_A          129 GLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPN------------SRIMIHQPSGGARGQATDIAIQAE  196 (277)
T ss_dssp             HHHHHHHHHHSCSCEEEEEEEEEETHHHHHHHTSCTTCEEECTT------------CEEEECCCCCCCCSSHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEEccEeHHHHHHHHHCCCcCCEEEecC------------CEEEEecccccccCcHHHHHHHHH
Confidence            445777888889999999999999999999999999  999999            88776654433211100000    


Q ss_pred             -----------HHHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccccCc
Q psy5402          93 -----------LFPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGVFTT  130 (198)
Q Consensus        93 -----------~l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~  130 (198)
                                 .+.+..|  .....+++-.+..++++||+++||||+|.+.
T Consensus       197 ei~~~~~~~~~i~a~~tG~~~e~i~~~~drd~~lta~EAle~GLID~I~~~  247 (277)
T 1tg6_A          197 EIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVH  247 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCHHHHHHHHSSCEEECHHHHHHHTSCSEECSS
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcccCHHHHHHCCCCCEecCc
Confidence                       0111112  2334455555667899999999999999864

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1

Probab=98.47  E-value=1.7e-07  Score=74.16  Aligned_cols=100  Identities=14%  Similarity=0.080  Sum_probs=68.7

Q ss_pred             HHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCE--EEeecCCcccCCCcccceEEEecccccccccCCchhh-----
Q psy5402          19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDI--VFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSS-----   91 (198)
Q Consensus        19 ~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~--~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~-----   91 (198)
                      -..+++.|...++||++.+.|.|..+|..++++||.  |++.++            +++......-|......-.     
T Consensus        77 ~~~I~~~i~~~~~~v~t~~~G~AaS~g~~i~~ag~~g~r~~~p~------------a~imiH~p~~~~~G~a~di~~~a~  144 (201)
T 3p2l_A           77 GMGVYDTMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPS------------SQIMIHQPLGGFRGQASDIEIHAK  144 (201)
T ss_dssp             HHHHHHHHHHSSSCEEEEEEEEEETHHHHHHHTSSTTCEEECTT------------CEEEECCCEEEEEEEHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCeEEEEcCEehhHHHHHHHcCccCCEEEcCC------------CeEEEeccccccCCCHHHHHHHHH
Confidence            455778888899999999999999999999999998  999999            8887665543211100000     


Q ss_pred             --hH--------HHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccccCc
Q psy5402          92 --VL--------FPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGVFTT  130 (198)
Q Consensus        92 --~~--------l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~  130 (198)
                        ..        +.+..|  .....+++-....++|+||+++||||+|+++
T Consensus       145 ~l~~~~~~~~~~ya~~tG~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~  195 (201)
T 3p2l_A          145 NILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAKAYGLIDHVIES  195 (201)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCHHHHHHHTSSCEEEEHHHHHHHTSCSEECCC
T ss_pred             HHHHHHHHHHHHHHHHhCcCHHHHHHHhhcCeeecHHHHHHcCCccEecCC
Confidence              00        111112  2233344434445799999999999999875

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=98.44  E-value=2.2e-07  Score=84.24  Aligned_cols=120  Identities=12%  Similarity=0.069  Sum_probs=80.7

Q ss_pred             CCccCchhhhhh------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEe
Q psy5402           3 NNPTDLINEDTD------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFH   76 (198)
Q Consensus         3 s~G~Dl~~~~~~------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~   76 (198)
                      |.|..+.+-...      ....+. -+..+....+|+|+.|.|+|.|||... ..||++|+.+++           +.++
T Consensus       149 SgGArlqe~~~~l~~~~~~g~i~~-~~~~ls~~giP~Isvv~G~~~GGga~~-a~~d~vim~e~~-----------a~i~  215 (587)
T 1pix_A          149 CSGVKFDEQEKVYPNRRGGGTPFF-RNAELNQLGIPVIVGIYGTNPAGGGYH-SISPTVIIAHEK-----------ANMA  215 (587)
T ss_dssp             CCEECGGGHHHHSSSTTSTTHHHH-HHHHHHHTTCCEEEEECSEEETHHHHH-HHSSSEEEEETT-----------CEEE
T ss_pred             CCCCCccccchhccccccHHHHHH-HHHHHhCCCCCEEEEEecCCcHHHHHH-HhcCceEEecCC-----------cEEE
Confidence            678888664332      123233 345566788999999999999999999 999999888753           7776


Q ss_pred             cccccccccCCchhhhHHHHHhcHHHHHHHH-hcCCCCCHHH-------HHhcCCcccccCchh-HHHHHHHHH
Q psy5402          77 TPFTLRGMTPEGCSSVLFPRIFGNSVASELL-YTGRKLNAQE-------ALQYGFVSGVFTTEE-IERDLWPRI  141 (198)
Q Consensus        77 ~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~ll-l~g~~~~a~e-------A~~~Glv~~v~~~~~-l~~~a~~~a  141 (198)
                      +.-..+  +-... .   .-.++..+|.+++ .+|+.+++++       +.+.|++|.++++++ ..+.+++++
T Consensus       216 ~~GP~v--i~~~~-~---~~~~d~~~A~el~~~tge~v~~e~lgga~~h~~~~GvvD~vv~~e~~a~~~~r~~l  283 (587)
T 1pix_A          216 VGGAGI--MGGMN-P---KGHVDLEYANEIADMVDRTGKTEPPGAVDIHYTETGFMREVYASEEGVLEGIKKYV  283 (587)
T ss_dssp             SCCCTT--CCSCC-S---SSSCCHHHHHHHHHHHHTTCCCCCSSBHHHHTTTSCCSCEEESSHHHHHHHHHHHH
T ss_pred             ecCHHH--Hhhhc-c---ccccchhHHHHHHHHhCCccChhhcccHHHHHhhcCceeEecCCHHHHHHHHHHHH
Confidence            632211  10000 0   0126889999999 8998887665       236899999999765 344444443

>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A

Probab=98.28  E-value=1.8e-06  Score=68.47  Aligned_cols=101  Identities=15%  Similarity=0.188  Sum_probs=69.0

Q ss_pred             HHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcC--EEEeecCCcccCCCcccceEEEecccccccc-cCCchhh----
Q psy5402          19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCD--IVFASDTAILLNHPVFVLQATFHTPFTLRGM-TPEGCSS----   91 (198)
Q Consensus        19 ~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD--~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi-~p~~g~~----   91 (198)
                      -..++..|...+.||...+.|.|.+.|..|++++|  .|++.++            +++-+-....|. .....-.    
T Consensus        85 glaIyd~m~~~~~~V~t~~~G~AaS~as~il~aG~~gkR~~lP~------------a~iMIHqP~~~~~~G~a~di~i~a  152 (205)
T 4gm2_A           85 VISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKN------------SSFCLNQSYSIIPFNQATNIEIQN  152 (205)
T ss_dssp             HHHHHHHHHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTT------------CEEEECCCCCCCCSSCCSCHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEEEeeehhHHHHHHhcCCCCCEEecCC------------CEEEEecCcccccccCHHHHHHHH
Confidence            34567788888999999999999999999999999  4999999            887766555443 1110000    


Q ss_pred             ---hH--------HHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccccCch
Q psy5402          92 ---VL--------FPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGVFTTE  131 (198)
Q Consensus        92 ---~~--------l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~  131 (198)
                         ..        +.+..|  .....+++-....++|+||+++||||+|++.+
T Consensus       153 ~el~~~~~~i~~iya~~TG~~~e~I~~~m~rd~~msa~EA~eyGlID~V~~~e  205 (205)
T 4gm2_A          153 KEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEKE  205 (205)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCHHHHHHHTTSCEEEEHHHHHHTTSCSEECCC-
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCccEeecCC
Confidence               00        111111  22223444455569999999999999998753

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=98.14  E-value=2e-05  Score=70.57  Aligned_cols=109  Identities=15%  Similarity=0.139  Sum_probs=75.8

Q ss_pred             CCccCchhhhhhhHHHHHHHHHHHhcC--CCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccc
Q psy5402           3 NNPTDLINEDTDTSITLQKYVAAFIDY--PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFT   80 (198)
Q Consensus         3 s~G~Dl~~~~~~~~~~~~~~~~~i~~~--~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~   80 (198)
                      |.|.-++|-. .....+.+++.++..+  -+|+|+.|.|+|.|||......||++|+++++           +.+++.  
T Consensus       141 SgGaRmqEg~-~~l~~~~~i~~~~~~~s~~iP~Isvv~G~~~GG~a~~~al~D~~im~~~~-----------a~i~~a--  206 (530)
T 3iav_A          141 SGGARIQEGV-ASLGAYGEIFRRNTHASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQT-----------SHMFIT--  206 (530)
T ss_dssp             CCSBCGGGTH-HHHHHHHHHHHHHHHTTTTSCEEEEECSEEEGGGGHHHHHSSEEEEETTT-----------CEEESS--
T ss_pred             CCCcchhhhh-hhHHHHHHHHHHHHHHcCCCCEEEEEecCcchHHHHHHHhCCEEEEecCC-----------cEEEec--
Confidence            5667675532 2223344444444333  38999999999999999888899999998763           666552  


Q ss_pred             cccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHH-------HhcCCcccccCch-hHHHHHHHHHHHHh
Q psy5402          81 LRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEA-------LQYGFVSGVFTTE-EIERDLWPRIHAWA  145 (198)
Q Consensus        81 ~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA-------~~~Glv~~v~~~~-~l~~~a~~~a~~la  145 (198)
                                        |+...+  -.+|+.+++++.       ...|++|.+++++ +..+.+++++..+-
T Consensus       207 ------------------GP~vi~--~~~ge~v~~e~LGGa~~h~~~sGv~d~va~de~~a~~~~r~~ls~lp  259 (530)
T 3iav_A          207 ------------------GPDVIK--TVTGEDVGFEELGGARTHNSTSGVAHHMAGDEKDAVEYVKQLLSYLP  259 (530)
T ss_dssp             ------------------CHHHHH--HHHCCCCCHHHHHBHHHHHHTSCCCSEEESSHHHHHHHHHHHHHHSC
T ss_pred             ------------------CHHHHH--HHhCCcCChhhcchHHHHHhccCceeEEecChHHHHHHHHHHHHhcc
Confidence                              333222  257888998875       6899999999875 47777777777664

>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=98.04  E-value=3.3e-05  Score=64.10  Aligned_cols=94  Identities=13%  Similarity=0.116  Sum_probs=65.7

Q ss_pred             HHHHHhcCCCcEEEEEcCccchHHHHH-hhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhhHHHHHhcH
Q psy5402          22 YVAAFIDYPKPLIAIVNGPAIGISATT-LALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGN  100 (198)
Q Consensus        22 ~~~~i~~~~kp~IA~v~G~a~GgG~~l-alacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~  100 (198)
                      .+.++.....|.|+.+-|+|.||+... ++.+|++++.++            +.+++.-..           .....++.
T Consensus       186 ~l~~~s~~~vP~Isvv~g~~~GG~~as~a~~~D~i~a~p~------------A~i~~aGP~-----------vi~~~~~~  242 (285)
T 2f9i_B          186 SLKRHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPK------------ALIGFAGRR-----------VIEQTINE  242 (285)
T ss_dssp             HHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTT------------CBEESSCHH-----------HHHHHHTS
T ss_pred             HHHHHHcCCCCEEEEEeCCccHHHHHHhhhCCCEEEEeCC------------cEEEEcCHH-----------HHHHHhcc
Confidence            556666788999999999999999654 789999999999            776553211           12222222


Q ss_pred             HHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHH
Q psy5402         101 SVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAW  144 (198)
Q Consensus       101 ~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l  144 (198)
                      ..      .-..-+++.+.+.|+||.|++++++.+.+.+++..+
T Consensus       243 ~~------~e~~~~Ae~~~~~G~iD~Iv~~~e~r~~l~~~L~~l  280 (285)
T 2f9i_B          243 KL------PDDFQTAEFLLEHGQLDKVVHRNDMRQTLSEILKIH  280 (285)
T ss_dssp             CC------CTTTTBHHHHHHTTCCSEECCGGGHHHHHHHHHHHT
T ss_pred             cc------hHhHhhHHHHHhcCCccEEeChHHHHHHHHHHHHHh
Confidence            11      111124677789999999999888887777766544

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=97.98  E-value=3.4e-05  Score=70.15  Aligned_cols=122  Identities=14%  Similarity=0.070  Sum_probs=70.7

Q ss_pred             HHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccC---------Cc
Q psy5402          18 TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTP---------EG   88 (198)
Q Consensus        18 ~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p---------~~   88 (198)
                      .+.+.+..+....|||||.+++ +.-+|+.|+++||-+++.++..-+.++++.....|.--.-++|+-+         ..
T Consensus       108 ~I~~~i~~~k~~gkpvva~~~~-aas~~y~lAsaad~i~~~P~~~vg~~g~~~~~~~~~~~l~klGi~~~~~~~G~~K~a  186 (593)
T 3bf0_A          108 YIGKALKEFRDSGKPVYAVGEN-YSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSA  186 (593)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESC-EEHHHHHHHTTSSEEEECTTCCEECCCCBCCEEECHHHHHHTTCEEEEEEECTTCGG
T ss_pred             HHHHHHHHHHhcCCeEEEEEcc-chhHHHHHHHhCCEEEECCCceEEEecccccccCHHHHHHHcCCeEEEEEeecccCC
Confidence            4556666666667999999876 6678899999999999999943333333211111111111223311         11


Q ss_pred             hhhh-----------HHHHHh-----------------cHHHHHHHHhc-------CCCCCHHHHHhcCCcccccCchhH
Q psy5402          89 CSSV-----------LFPRIF-----------------GNSVASELLYT-------GRKLNAQEALQYGFVSGVFTTEEI  133 (198)
Q Consensus        89 g~~~-----------~l~~~v-----------------G~~~a~~lll~-------g~~~~a~eA~~~Glv~~v~~~~~l  133 (198)
                      +..+           .+...+                 ......+++-.       +..+++++|+++||||++...+++
T Consensus       187 ~ep~~r~~ms~~~re~~~~~l~~~~~~~~~~va~~Rg~~~e~l~~~~d~~~~~l~~~~~~ta~~A~~~GLvD~i~~~~e~  266 (593)
T 3bf0_A          187 VEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAEQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSAEI  266 (593)
T ss_dssp             GHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHTTTTCHHHHHHHTTSSSEECCHHHH
T ss_pred             CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhhhhhhhcCCccHHHHHHCCCCCCCCCHHHH
Confidence            1100           111111                 11222223332       789999999999999999977776


Q ss_pred             HHHHHHH
Q psy5402         134 ERDLWPR  140 (198)
Q Consensus       134 ~~~a~~~  140 (198)
                      .+...+.
T Consensus       267 ~~~l~~~  273 (593)
T 3bf0_A          267 EKALTKE  273 (593)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6555443

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=97.97  E-value=2.7e-05  Score=69.77  Aligned_cols=108  Identities=21%  Similarity=0.194  Sum_probs=73.1

Q ss_pred             CCccCchhhhhhhHHHHHHHHHHHh--cCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccc
Q psy5402           3 NNPTDLINEDTDTSITLQKYVAAFI--DYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFT   80 (198)
Q Consensus         3 s~G~Dl~~~~~~~~~~~~~~~~~i~--~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~   80 (198)
                      |.|..++|-.. ....+.+++.++.  .--.|+|+.+.|+|.||+......||++|+.++            +.+++.  
T Consensus       139 SGGARmqeg~~-sl~~~~~i~~~~~~~s~~iP~Isvv~gp~~GG~a~s~~l~D~ii~~~~------------a~i~~a--  203 (523)
T 1on3_A          139 SGGARIQEGID-SLSGYGKMFFANVKLSGVVPQIAIIAGPCAGGASYSPALTDFIIMTKK------------AHMFIT--  203 (523)
T ss_dssp             ECSBCGGGTHH-HHHHHHHHHHHHHHHTTTSCEEEEEEEEEESGGGHHHHHSSEEEEETT------------CEEESS--
T ss_pred             CCCCChhhHHH-HHHHHHHHHHHHHHhcCCCCEEEEEcCCCchHHHHHHhhCCeEEEeCC------------CEEEec--
Confidence            56777765432 2223444443333  334999999999999999998899999999999            777554  


Q ss_pred             cccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHH-----HH--HhcCCcccccCc-hhHHHHHHHHHHHHh
Q psy5402          81 LRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQ-----EA--LQYGFVSGVFTT-EEIERDLWPRIHAWA  145 (198)
Q Consensus        81 ~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~-----eA--~~~Glv~~v~~~-~~l~~~a~~~a~~la  145 (198)
                                        |++....  .+|+.++.+     |.  .+.|++|.++++ .+..+.+++++..+-
T Consensus       204 ------------------GP~vI~~--~~ge~~~~e~lggae~h~~~~G~vd~vv~d~~~~~~~~r~lL~~lp  256 (523)
T 1on3_A          204 ------------------GPQVIKS--VTGEDVTADELGGAEAHMAISGNIHFVAEDDDAAELIAKKLLSFLP  256 (523)
T ss_dssp             ------------------CHHHHHH--HHCCCCCHHHHHSHHHHHHTTCCCSEEESSHHHHHHHHHHHHHTSC
T ss_pred             ------------------CHHHHHH--HhCCcCChHhcccHHHHhhccCceEEEeCCHHHHHHHHHHHHHhcC
Confidence                              2222221  457777764     22  368999999995 456666666666554

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=97.97  E-value=5.9e-05  Score=67.54  Aligned_cols=108  Identities=15%  Similarity=0.193  Sum_probs=71.7

Q ss_pred             CCccCchhhhhhhHHHHHHHHHHHhc--CCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccc
Q psy5402           3 NNPTDLINEDTDTSITLQKYVAAFID--YPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFT   80 (198)
Q Consensus         3 s~G~Dl~~~~~~~~~~~~~~~~~i~~--~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~   80 (198)
                      |.|.-++|-. .....+.+.+.+...  --.|+|+.|.|+|.|||......||++|+.+++           +.+++   
T Consensus       149 SGGARmqeg~-~sl~~~~~i~~~~~~~s~~iP~Isvv~Gp~~GG~a~s~a~~D~vi~~~~~-----------a~i~~---  213 (531)
T 3n6r_B          149 SGGARIQEGV-DSLAGYGEVFQRNIMASGVVPQISMIMGPCAGGAVYSPAMTDFIFMVKDS-----------SYMFV---  213 (531)
T ss_dssp             CCCBCGGGTH-HHHHHHHHHHHHHHHTTTTSCEEEEECSCCBGGGGHHHHHSSEEEEETTT-----------CBCBS---
T ss_pred             CCccccCccc-chhhhHHHHHHHHHHHhCCCCEEEEEeCCcchHHHHHhhhCCEEEEecCC-----------ceEee---
Confidence            6677776522 122223344333322  358999999999999998888889999999862           44332   


Q ss_pred             cccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHH-------HhcCCcccccCchh-HHHHHHHHHHHH
Q psy5402          81 LRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEA-------LQYGFVSGVFTTEE-IERDLWPRIHAW  144 (198)
Q Consensus        81 ~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA-------~~~Glv~~v~~~~~-l~~~a~~~a~~l  144 (198)
                                       -|++..+  -.+|+.+++++.       .+.|++|.++++++ ..+.+++++..+
T Consensus       214 -----------------aGP~vI~--~~~ge~v~~E~LGGa~~h~~~sG~~d~v~~~e~~a~~~~r~lls~L  266 (531)
T 3n6r_B          214 -----------------TGPDVVK--TVTNEQVSAEELGGATTHTRKSSVADAAFENDVEALAEVRRLVDFL  266 (531)
T ss_dssp             -----------------SCHHHHH--HHHCCCCCHHHHHBHHHHHHTTSCCSEEESSHHHHHHHHHHHHTTS
T ss_pred             -----------------cCHHHHH--HHhCCccChhhcchHHHHhhccCcceEEeCCHHHHHHHHHHHHHhc
Confidence                             1332222  257899999998       89999999998753 555555555444

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=97.85  E-value=0.00014  Score=65.41  Aligned_cols=109  Identities=15%  Similarity=0.123  Sum_probs=72.6

Q ss_pred             CCccCchhhhhhhHHHHHHHHHHHhcC--CCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccc
Q psy5402           3 NNPTDLINEDTDTSITLQKYVAAFIDY--PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFT   80 (198)
Q Consensus         3 s~G~Dl~~~~~~~~~~~~~~~~~i~~~--~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~   80 (198)
                      |.|..++|-.. ....+.+++.++...  ..|.|+.+.|+|.||+......||++|+.++.           +.+++.  
T Consensus       152 SGGARmqeg~~-sl~~~~~i~~~~~~~s~~iP~Isvv~gp~~GG~a~s~al~D~ii~~~~~-----------a~i~~a--  217 (548)
T 2bzr_A          152 GAGARIQEGVV-SLGLYSRIFRNNILASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQT-----------SQMFIT--  217 (548)
T ss_dssp             CCSCCGGGTTH-HHHHHHHHHHHHHHTTTTSCEEEEECSEEESGGGHHHHHSSEEEEETTT-----------CEEESS--
T ss_pred             CCCCCchhHHH-HHHHHHHHHHHHHHhcCCCcEEEEecCCCchHHHHHHHhCCeEEeccCc-----------eeEEec--
Confidence            67777766532 233455555544443  49999999999999998888899999999863           555443  


Q ss_pred             cccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHH-----H--HHhcCCcccccCc-hhHHHHHHHHHHHHh
Q psy5402          81 LRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQ-----E--ALQYGFVSGVFTT-EEIERDLWPRIHAWA  145 (198)
Q Consensus        81 ~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~-----e--A~~~Glv~~v~~~-~~l~~~a~~~a~~la  145 (198)
                                        |++..+.  .+|+.++.+     |  +.+.|++|.++++ .+..+.+++++..+-
T Consensus       218 ------------------GP~vI~~--~~ge~v~~e~lggae~h~~~sG~~d~vv~d~~~~~~~~r~lls~lp  270 (548)
T 2bzr_A          218 ------------------GPDVIKT--VTGEEVTMEELGGAHTHMAKSGTAHYAASGEQDAFDYVRELLSYLP  270 (548)
T ss_dssp             ------------------CHHHHHH--HHCCCCCHHHHHBHHHHHHTSSCCSEEESSHHHHHHHHHHHHTTSC
T ss_pred             ------------------cHHHHHH--HhCCcCChHhcccHHHHhhccCceeEEeCCHHHHHHHHHHHHHhcC
Confidence                              3333222  457777764     2  3368999999985 456665555554443

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=97.81  E-value=0.00011  Score=65.84  Aligned_cols=110  Identities=16%  Similarity=0.130  Sum_probs=73.6

Q ss_pred             CCccCchhhhhhhHHHHHHHHHHHh--cCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceE-EEeccc
Q psy5402           3 NNPTDLINEDTDTSITLQKYVAAFI--DYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA-TFHTPF   79 (198)
Q Consensus         3 s~G~Dl~~~~~~~~~~~~~~~~~i~--~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a-~~~~pe   79 (198)
                      |.|..++|-.. ....+.+++.++.  +-..|.|+.+.|+|.||+......||++|+.++.           + .+++  
T Consensus       135 SGGaRmqeg~~-sl~~~~~i~~~~~~~s~~iP~Isvv~gp~~GG~a~s~~l~D~~i~~~~~-----------a~~i~~--  200 (522)
T 1x0u_A          135 SGGARIQEGAL-SLEGYGAVFKMNVMASGVIPQITIMAGPAAGGAVYSPALTDFIIMIKGD-----------AYYMFV--  200 (522)
T ss_dssp             CCSBCGGGTHH-HHHHHHHHHHHHHHHTTTSCEEEEECSEEEGGGGHHHHHSSEEEEECST-----------TCEEES--
T ss_pred             CCCCChhHHHH-HHHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHhcCCeEEEecCC-----------ccEEEe--
Confidence            67777766432 2223444443333  3459999999999999999888999999999873           4 4433  


Q ss_pred             ccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHH-----H--HHhcCCcccccCc-hhHHHHHHHHHHHHhc
Q psy5402          80 TLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQ-----E--ALQYGFVSGVFTT-EEIERDLWPRIHAWAK  146 (198)
Q Consensus        80 ~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~-----e--A~~~Glv~~v~~~-~~l~~~a~~~a~~la~  146 (198)
                                        -|++....  .+|+.++.+     |  +.+.|++|.++++ .+..+.+++++..+-.
T Consensus       201 ------------------aGP~vI~~--~~ge~~~~e~lggae~~~~~~G~~d~vv~~~~~~~~~~~~ll~~lp~  255 (522)
T 1x0u_A          201 ------------------TGPEITKV--VLGEEVSFQDLGGAVVHATKSGVVHFMVDSEQEAINLTKRLLSYLPS  255 (522)
T ss_dssp             ------------------SCHHHHHH--TTCCCCCHHHHHBHHHHHHTTCCCSEEESCHHHHHHHHHHHHHHSCS
T ss_pred             ------------------cCHHHHHH--HhCCcCChhhcchHHHHhhcCceeEEEeCCHHHHHHHHHHHHHhccc
Confidence                              12222221  467788764     2  2368999999995 5677777777766653

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=97.70  E-value=0.00038  Score=62.34  Aligned_cols=113  Identities=17%  Similarity=0.157  Sum_probs=74.8

Q ss_pred             hhhHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhh----cCEEEeecCCcccCCCcccceEEEecccccccccCCc
Q psy5402          13 TDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL----CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG   88 (198)
Q Consensus        13 ~~~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lala----cD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~   88 (198)
                      ......+.+++.++.....|.|+.|-|.|.|||+.....    +|+++|.++            +.++.-...       
T Consensus       381 ~G~~~~~Ak~l~~~~~~~vP~Isvi~g~~~GGg~~~~a~~a~~~D~v~a~p~------------A~i~v~gpe-------  441 (522)
T 1x0u_A          381 KGIIRHGAKMLYAFAEATVPKITVIVRKSYGGAHIAMSIKSLGADLVYAWPT------------AEIAVTGPE-------  441 (522)
T ss_dssp             TTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTCCGGGTCSEEEECTT------------CEEESSCHH-------
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEEeCCcccHHHHHhcccccCCCEEEEeCC------------CEEEecCHH-------
Confidence            334456777888999999999999999999998865544    999999999            777653322       


Q ss_pred             hhhhHHHHH-hc---------HHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhc
Q psy5402          89 CSSVLFPRI-FG---------NSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK  146 (198)
Q Consensus        89 g~~~~l~~~-vG---------~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~  146 (198)
                      +....+.+. +-         .....+.  .-..-++..+.+.|+||.|+++.++.+.....++.+..
T Consensus       442 gaa~Il~r~~i~~~~d~~~~~~~l~~~y--~~~~~~~~~~~~~G~iD~II~p~~tR~~L~~~L~~~~~  507 (522)
T 1x0u_A          442 GAVRILYRKEIQQASNPDDVLKQRIAEY--RKLFANPYWAAEKGLVDDVIEPKDTRRVIVAGLEMLKT  507 (522)
T ss_dssp             HHHHHHTSSSSSSSSSSSSSSHHHHHHH--HHHHSSSHHHHHTTSSSEECCGGGHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhhhhhcccCHHHHHHHHHHHH--HHhcCCHHHHHhcCCCcEeECHHHHHHHHHHHHHHHhh
Confidence            111111111 00         0011100  00123557799999999999999888887777776643

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=97.69  E-value=0.00023  Score=64.00  Aligned_cols=88  Identities=19%  Similarity=0.138  Sum_probs=63.1

Q ss_pred             HHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhhHHHHHhcHHHH
Q psy5402          24 AAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVA  103 (198)
Q Consensus        24 ~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a  103 (198)
                      ..+.....|+|+.|.|+|.|||......||++|+.++.           +.+.+           +         |+...
T Consensus       191 ~~ls~~giP~Isvv~G~~~GGga~~~a~~d~vim~e~~-----------a~i~~-----------a---------GP~vi  239 (555)
T 3u9r_B          191 ANMSARGIPQIAVVMGSCTAGGAYVPAMSDETVMVREQ-----------ATIFL-----------A---------GPPLV  239 (555)
T ss_dssp             HHHHHTTCCEEEEECSCCBGGGGHHHHTSSEEEEETTT-----------CBCBS-----------S---------CHHHH
T ss_pred             HHHhcCCCCEEEEEecCCCccHHHHHHhCCceEEecCC-----------ceEEE-----------c---------cHHHH
Confidence            34555679999999999999999999999999888762           43322           1         22222


Q ss_pred             HHHHhcCCCCCHHHH-------HhcCCcccccCchh-HHHHHHHHHHHH
Q psy5402         104 SELLYTGRKLNAQEA-------LQYGFVSGVFTTEE-IERDLWPRIHAW  144 (198)
Q Consensus       104 ~~lll~g~~~~a~eA-------~~~Glv~~v~~~~~-l~~~a~~~a~~l  144 (198)
                      +  ..+|+.+++++.       ...|++|.++++++ ..+.+++++..+
T Consensus       240 k--~~~ge~~~~e~LGGa~~h~~~sGv~d~v~~de~~a~~~~r~~ls~L  286 (555)
T 3u9r_B          240 K--AATGEVVSAEELGGADVHCKVSGVADHYAEDDDHALAIARRCVANL  286 (555)
T ss_dssp             H--HHHCCCCCHHHHHBHHHHHHTTCSCSEEESSHHHHHHHHHHHHHTS
T ss_pred             H--HHhcCccChhhccchhhhhhccCceeEEeCCHHHHHHHHHHHHHhC
Confidence            2  257899999988       78999999998654 334455554444

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=97.42  E-value=0.001  Score=59.61  Aligned_cols=113  Identities=15%  Similarity=0.132  Sum_probs=74.9

Q ss_pred             hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhh----cCEEEeecCCcccCCCcccceEEEecccccccccCCchh
Q psy5402          15 TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL----CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCS   90 (198)
Q Consensus        15 ~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lala----cD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~   90 (198)
                      ......+++..+.....|+|+.|-|.|+|||+.-...    +|+++|.++            ++++.       .++-+.
T Consensus       388 ~~~~~A~~~~a~~~~~vP~isvI~g~~~gGg~~am~~~~~~~d~~~a~p~------------a~~~V-------m~pega  448 (527)
T 1vrg_A          388 IIRHGAKLLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPS------------AEIAV-------MGPEGA  448 (527)
T ss_dssp             HHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTT------------CEEES-------SCHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEeCCcccHHHHHhcCCCCCCCEEEEcCC------------CeEEe-------cCHHHH
Confidence            3456667888899999999999999999988754433    899988888            77653       333333


Q ss_pred             hhHHHH-Hhc----HHHHHH-HHh--cCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhc
Q psy5402          91 SVLFPR-IFG----NSVASE-LLY--TGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK  146 (198)
Q Consensus        91 ~~~l~~-~vG----~~~a~~-lll--~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~  146 (198)
                      +..+.+ .+-    ....++ +.-  .-..-++..+.+.|+||+|+++.+..+.....++.+..
T Consensus       449 a~Il~r~~~~~~~d~~~~~~~~~~~y~~~~~~p~~~~~~g~iD~II~p~~tR~~l~~~L~~l~~  512 (527)
T 1vrg_A          449 ANIIFKREIEASSNPEETRRKLIEEYKQQFANPYIAASRGYVDMVIDPRETRKYIMRALEVCET  512 (527)
T ss_dssp             HHHHTHHHHHHSSCHHHHHHHHHHHHHHHTSSHHHHHHTTSSSEECCGGGHHHHHHHHHHHHTT
T ss_pred             HHHHhhhhhhcccCHHHHHHHHHHHHHHhhCCHHHHHHcCCCCeeeCHHHHHHHHHHHHHHHhc
Confidence            222222 110    111111 211  11235678899999999999998888877777766653

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=97.29  E-value=0.001  Score=59.63  Aligned_cols=109  Identities=14%  Similarity=0.133  Sum_probs=67.1

Q ss_pred             CCccCchhhhhhhHHHHHHHHHHH--hcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccc
Q psy5402           3 NNPTDLINEDTDTSITLQKYVAAF--IDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFT   80 (198)
Q Consensus         3 s~G~Dl~~~~~~~~~~~~~~~~~i--~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~   80 (198)
                      |.|.-+.+-.. ....+.+++.+.  .....|+|+.|.|+|.|||......||++|+.++.           +.+     
T Consensus       142 SgGAR~qeg~~-~l~g~~~~~~~~~~~s~~iP~Isvv~Gp~~GG~a~s~al~D~vi~~~~~-----------a~i-----  204 (527)
T 1vrg_A          142 SGGARIQEGVD-ALAGYGEIFLRNTLASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQT-----------ARM-----  204 (527)
T ss_dssp             ECSBCGGGTHH-HHHHHHHHHHHHHHHTTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTT-----------CBC-----
T ss_pred             CCCCCccchhH-HHHHHHHHHHHHHHhCCCCCEEEEEeCCCchHHHHHHHcCCeEEEecCc-----------eEE-----
Confidence            55666654322 112233333222  24569999999999999998888899999999872           332     


Q ss_pred             cccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHH-----H--HHhcCCcccccCch-hHHHHHHHHHHHHh
Q psy5402          81 LRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQ-----E--ALQYGFVSGVFTTE-EIERDLWPRIHAWA  145 (198)
Q Consensus        81 ~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~-----e--A~~~Glv~~v~~~~-~l~~~a~~~a~~la  145 (198)
                        ++             .|+.....  .+|+.++.+     |  +.+.|++|.+++++ +..+.+++++..+-
T Consensus       205 --~~-------------aGP~vi~~--~~ge~v~~e~lggae~~~~~~G~vd~vv~d~~~~~~~~~~~Ls~lp  260 (527)
T 1vrg_A          205 --FI-------------TGPNVIKA--VTGEEISQEDLGGAMVHNQKSGNAHFLADNDEKAMSLVRTLLSYLP  260 (527)
T ss_dssp             --BS-------------SCHHHHHH--HHCCCCCHHHHHBHHHHHHTSCCCSEEESSHHHHHHHHHHHHTTSC
T ss_pred             --Ee-------------cCHHHHHH--HhCCCCCccccccHHHHhhcccceEEEecCHHHHHHHHHHHHHhcC
Confidence              22             12222221  456777764     2  23699999999854 46665555554443

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=97.19  E-value=0.002  Score=58.38  Aligned_cols=115  Identities=10%  Similarity=0.040  Sum_probs=78.8

Q ss_pred             hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhh-----c--CEEEeecCCcccCCCcccceEEEecccccccccCC
Q psy5402          15 TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-----C--DIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPE   87 (198)
Q Consensus        15 ~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lala-----c--D~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~   87 (198)
                      ......+++.++.++..|+|+.|-|.++|||+. +++     +  |+++|.++            ++++.       .++
T Consensus       429 i~~~gA~~~~a~a~a~vP~itvI~g~~~Ggg~~-am~~~~~~~~~d~~~a~p~------------A~~~V-------m~p  488 (587)
T 1pix_A          429 LLGLGQSLIYSIQTSHIPQFEITLRKGTAAAHY-VLGGPQGNDTNAFSIGTAA------------TEIAV-------MNG  488 (587)
T ss_dssp             HHHHHHHHHHHHHTCCCCEEEEECSEEETTHHH-HTTCTTCTTTEEEEEECTT------------CEEES-------SCH
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEcCCCccHHHH-HhcCcccCcccceeeeccC------------CeEec-------CCH
Confidence            345677899999999999999999999998864 444     4  99999888            77753       333


Q ss_pred             chh-hhHHHHHhcHH---------HH--HH-HHh-cCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCH
Q psy5402          88 GCS-SVLFPRIFGNS---------VA--SE-LLY-TGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP  149 (198)
Q Consensus        88 ~g~-~~~l~~~vG~~---------~a--~~-lll-~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~  149 (198)
                      -+. ...+....-..         .+  ++ +.- .-+..++..|.+.|+||+|+++.+........++.+...|.
T Consensus       489 egaa~Il~r~~~~~~~~~g~~~~~~~~~~~~~~~~y~~~~~p~~aa~~g~iD~VI~p~~tR~~l~~~L~~~~~~~~  564 (587)
T 1pix_A          489 ETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQAFYTKSRPKVCAELGLVDEIVDMNKIRGYVEAFTEAAYQNPE  564 (587)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTSHHHHHHHTSSSEECCTTTHHHHHHHHHHHHTTSCS
T ss_pred             HHHHHHHHhhhhhhhhhcCCChHHHHHHHHHHHHHHHHhCCHHHHHhcCCCccccCHHHHHHHHHHHHHHHhcCCc
Confidence            233 22222221110         00  00 100 01247889999999999999999988888888888776664

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=97.05  E-value=0.0026  Score=56.93  Aligned_cols=113  Identities=17%  Similarity=0.124  Sum_probs=73.8

Q ss_pred             hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhh----cCEEEeecCCcccCCCcccceEEEecccccccccCCchh
Q psy5402          15 TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL----CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCS   90 (198)
Q Consensus        15 ~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lala----cD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~   90 (198)
                      ......+++..+.+...|+|+.|=|.++|||+.-...    +|+++|.++            +.++       ..++-+.
T Consensus       384 i~~~~A~~l~a~a~~~vP~itvI~g~~~Ggg~~am~~~~~~~d~~~a~p~------------a~~~-------Vm~pega  444 (523)
T 1on3_A          384 IIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPS------------AEIA-------VMGAEGA  444 (523)
T ss_dssp             HHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTT------------CEEE-------SSCHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEeCCcccHHHHHhcccCCCCCEEEEcCC------------CeEE-------ecCHHHH
Confidence            3446677888999999999999999999998854444    788888888            6664       3333333


Q ss_pred             hhHHHHH-hc----HHHHHH-HHh--cCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhc
Q psy5402          91 SVLFPRI-FG----NSVASE-LLY--TGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK  146 (198)
Q Consensus        91 ~~~l~~~-vG----~~~a~~-lll--~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~  146 (198)
                      +..+.+. +-    ....++ +.-  .-..-++..+.+.|+||+|+++.+..+.....++.+..
T Consensus       445 a~Il~r~~~~~~~d~~~~~~~~~~~y~~~~~~p~~~a~~g~iD~II~p~~tR~~l~~~L~~l~~  508 (523)
T 1on3_A          445 ANVIFRKEIKAADDPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVIDPADTRRKIASALEMYAT  508 (523)
T ss_dssp             HHHHTHHHHHHSSCHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEECCGGGHHHHHHHHHHHGGG
T ss_pred             HHHHhhhhhhcccCHHHHHHHHHHHHHHhhCCHHHHHhcCCCCEeeCHHHHHHHHHHHHHHHhc
Confidence            2222221 11    011111 211  11125667899999999999998888777776666543

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=96.86  E-value=0.0061  Score=54.82  Aligned_cols=111  Identities=16%  Similarity=0.141  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhh----hcCEEEeecCCcccCCCcccceEEEecccccccccCCchhh
Q psy5402          16 SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLA----LCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSS   91 (198)
Q Consensus        16 ~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lal----acD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~   91 (198)
                      .....+++..+.+...|+|+.|=|.|+|||+....    .+|+++|.++            ++++.       .++-+..
T Consensus       406 ~~~ga~~l~a~~~~~VP~isvI~g~~~Ggg~~am~~~~~~~d~~~awp~------------a~i~V-------mgpegaa  466 (548)
T 2bzr_A          406 IRRGAKLLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPT------------AQIAV-------MGASGAV  466 (548)
T ss_dssp             HHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTT------------CEEES-------SCHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhccccCCCCEEEEcCC------------CEEEe-------cCHHHHH
Confidence            34566788888999999999999999999876543    3899999998            77754       2222222


Q ss_pred             hHHHHH-hcH------H--HHHH-HHh--cCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHh
Q psy5402          92 VLFPRI-FGN------S--VASE-LLY--TGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWA  145 (198)
Q Consensus        92 ~~l~~~-vG~------~--~a~~-lll--~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la  145 (198)
                      ..+.+. +-.      .  ..++ +.-  .-..-++..+.+.|+||+|+++.+..+.....++.+.
T Consensus       467 ~Il~r~~~~~~~~~g~~~~~~~~~~~~~y~~~~~~p~~~a~~g~iD~II~p~~tR~~l~~~L~~l~  532 (548)
T 2bzr_A          467 GFVYRQQLAEAAANGEDIDKLRLRLQQEYEDTLVNPYVAAERGYVGAVIPPSHTRGYIGTALRLLE  532 (548)
T ss_dssp             HHHTCCC----------CHHHHHHHHHHHHHHHSBSHHHHHTTSSSEECCGGGHHHHHHHHHHHTT
T ss_pred             HHHhhhHHhhhhcccccHHHHHHHHHHHHHHhhCCHHHHHhcCCCceeeCHHHHHHHHHHHHHHHh
Confidence            222111 100      0  0111 111  0012345678999999999999888777666666554

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=96.84  E-value=0.0036  Score=57.95  Aligned_cols=32  Identities=19%  Similarity=0.168  Sum_probs=30.3

Q ss_pred             CCCcEEEEEcCccchHHHHHhhhcCEEEeecC
Q psy5402          29 YPKPLIAIVNGPAIGISATTLALCDIVFASDT   60 (198)
Q Consensus        29 ~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~   60 (198)
                      ...|+|+.|.|+|.|||..+...||++|+.++
T Consensus       245 ~~IPqIsvV~G~c~GGgAY~paL~D~vImv~~  276 (758)
T 3k8x_A          245 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEG  276 (758)
T ss_dssp             TTSCEEEEECSCEETHHHHHHHHTCEEEEETT
T ss_pred             cCCCEEEEEccCCchHHHHHHhhCCEEEEECC
Confidence            35799999999999999999999999999998

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=96.82  E-value=0.0021  Score=57.53  Aligned_cols=113  Identities=17%  Similarity=0.189  Sum_probs=70.9

Q ss_pred             hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhh----cCEEEeecCCcccCCCcccceEEEecccccccccCCchh
Q psy5402          15 TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL----CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCS   90 (198)
Q Consensus        15 ~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lala----cD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~   90 (198)
                      ......+++.++.+.+.|+|+.|-|.++|||+.-...    +|+++|.++            ++++.-.      |.+..
T Consensus       396 i~~~gAk~l~a~a~a~VP~itvI~g~~~Ggg~~am~~~~~~~d~~~awp~------------A~i~Vm~------pegaa  457 (531)
T 3n6r_B          396 VIKHGAKLLYAYGEATVPMVTVITRKAYGGAYVVMSSKHLRADFNYAWPT------------AEVAVMG------AKGAT  457 (531)
T ss_dssp             HHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTT------------CEEESSC------HHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEcCCccchhhhhccCccCCCCeEEEcCC------------ceEecCC------HHHHH
Confidence            3456678899999999999999999999998754442    899999998            7765422      11111


Q ss_pred             hhHHHHHhc---HHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHh
Q psy5402          91 SVLFPRIFG---NSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWA  145 (198)
Q Consensus        91 ~~~l~~~vG---~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la  145 (198)
                      ...+.+.+-   ....+.--+.-+.-++-.|.+.|+||.|+++.+........++.+.
T Consensus       458 ~Il~r~~~~~~~~~~~~~~~y~~~~~~p~~aa~~~~vD~vIdP~~TR~~l~~~l~~~~  515 (531)
T 3n6r_B          458 EIIHRGDLGDPEKIAQHTADYEERFANPFVASERGFVDEVIQPRSTRKRVARAFASLR  515 (531)
T ss_dssp             HHHCCTTTTSTTHHHHHHHHHHHHHSSSHHHHHHTSSSEECCGGGHHHHHHHHHHTTT
T ss_pred             HHHhcccccchhHHHHHHHHHHHHhcCHHHHHhcCccCcccCHHHHHHHHHHHHHHHh
Confidence            111111110   0011100011112355568899999999999988876665555443

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=96.76  E-value=0.011  Score=53.55  Aligned_cols=106  Identities=12%  Similarity=0.043  Sum_probs=64.7

Q ss_pred             HHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccc--cccCCchhhhHHHH---Hh
Q psy5402          24 AAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLR--GMTPEGCSSVLFPR---IF   98 (198)
Q Consensus        24 ~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~--Gi~p~~g~~~~l~~---~v   98 (198)
                      ..+.....|+|+.|-|+|.|||...++++|++++.++            +.+++.--.+  |+.|. | . ..+.   .+
T Consensus       176 ~~ls~~~iP~Isvv~Gp~~gGgAy~a~~~~vim~~~~------------a~i~~aGP~vI~~~~p~-g-~-~~~~~~~~~  240 (588)
T 3gf3_A          176 SELNQLGIPVIVGIYGTNPAGGGYHSISPTILIAHQD------------ANMAVGGAGILSGMNPK-G-Y-IDDEAAEQI  240 (588)
T ss_dssp             HHHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETT------------CEEESSCCC------------------CHHH
T ss_pred             HHHhcCCCCEEEEEeCCCCchhhhHhhCCeEEEEECC------------cEEEecChhhhcccCcc-c-c-ccccchhhh
Confidence            3445568999999999999999877888888888888            8877654432  11110 0 0 1111   01


Q ss_pred             cHHHHHHHHhcCCCCCHHHHH--hcCCcccccCchh-HHHHHHHHHHHH
Q psy5402          99 GNSVASELLYTGRKLNAQEAL--QYGFVSGVFTTEE-IERDLWPRIHAW  144 (198)
Q Consensus        99 G~~~a~~lll~g~~~~a~eA~--~~Glv~~v~~~~~-l~~~a~~~a~~l  144 (198)
                      ......+-..+.+.+.+.+.+  ..|++|.++++++ ..+.+++++..+
T Consensus       241 ~~~~~ge~~vs~eeLGGa~~h~~~sGv~d~~a~de~~al~~~r~~ls~L  289 (588)
T 3gf3_A          241 IAAQIENSKLKVPAPGSVPIHYDETGFFREVYQNDLGVIDGIKKYISYL  289 (588)
T ss_dssp             HHHHHHHHHTTCCCTTBHHHHTTTSCCSCEEESSHHHHHHHHHHHHHTS
T ss_pred             hhhhccccccChhhccchhhhccccccceEEeCCHHHHHHHHHHHHHhC
Confidence            111112222477778777777  5899999998654 555555555544

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=96.72  E-value=0.0035  Score=56.13  Aligned_cols=114  Identities=20%  Similarity=0.286  Sum_probs=72.3

Q ss_pred             hhHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhh-----cCEEEeecCCcccCCCcccceEEEecccccccccCCc
Q psy5402          14 DTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-----CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG   88 (198)
Q Consensus        14 ~~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lala-----cD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~   88 (198)
                      .......+++.++.+...|+|+.|-|.++|||+ ++++     .|+++|.++            ++++.-.      |.+
T Consensus       389 gi~~~~Ak~l~a~a~a~vP~itvI~g~~~GGa~-~am~~~~~~~d~~~awp~------------a~~~Vm~------~eg  449 (530)
T 3iav_A          389 GIIRRGAKLIFAYAEATVPLITVITRKAFGGAY-VVMGSKHLGADLNLAWPT------------AQIAVMG------AQG  449 (530)
T ss_dssp             THHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHH-HHTTCGGGTCSEEEECTT------------CEEESSC------HHH
T ss_pred             hHHHHHHHHHHHHHhCCCCEEEEEeCCcchHHH-HHhcCCCCCCCEEEEcCC------------ceEecCC------HHH
Confidence            345567788999999999999999999998777 4444     799999998            7775422      111


Q ss_pred             hhhhHHHHHhc------HHHHHHHH--hcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhc
Q psy5402          89 CSSVLFPRIFG------NSVASELL--YTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK  146 (198)
Q Consensus        89 g~~~~l~~~vG------~~~a~~ll--l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~  146 (198)
                      .....+.+.+-      ...-.++.  +.-+.-++..|.+.|+||.|+++.+.........+.+..
T Consensus       450 aa~il~r~~~~~~~~d~~~~~~~~~~~y~~~~~~p~~aa~~~~vD~VIdP~~TR~~l~~~l~~~~~  515 (530)
T 3iav_A          450 AVNILHRRTIADAGDDAEATRARLIQEYEDALLNPYTAAERGYVDAVIMPSDTRRHIVRGLRQLRT  515 (530)
T ss_dssp             HHHHHTSTTTSTTCTTCHHHHHHHHHHHHHHHSSSHHHHHTTSSSEECCGGGHHHHHHHHHHHHTT
T ss_pred             HHHHHhhhhhhhcccCHHHHHHHHHHHHHHhcCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHhc
Confidence            11111111110      00001111  111123667788999999999999888776666655543

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=96.41  E-value=0.016  Score=52.54  Aligned_cols=114  Identities=11%  Similarity=0.090  Sum_probs=74.8

Q ss_pred             hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhc-------CEEEeecCCcccCCCcccceEEEecccccccccCC
Q psy5402          15 TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALC-------DIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPE   87 (198)
Q Consensus        15 ~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalac-------D~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~   87 (198)
                      ......+++.++.++++|+|+.|-|.++|||.. ++++       |+++|.++            ++++.       .++
T Consensus       431 i~~~gAk~l~a~a~a~VP~itvI~g~~~Ggg~~-am~~~~~~~~~~~~~awp~------------A~~sV-------m~p  490 (588)
T 3gf3_A          431 LLGLGQSLIYSIENSKLPSLEITIRKASAAAHY-VLGGPQGNNTNVFSIGTGA------------CEYYV-------MPG  490 (588)
T ss_dssp             HHHHHHHHHHHHHHHCSCEEEEESSEEETTHHH-HTTCTTCTTTEEEEEECTT------------CEEES-------SCH
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEcCCccHHHHH-HhcccccCCccceEEECCC------------ceEEe-------CCH
Confidence            345667899999999999999999999998764 4443       37777777            66643       333


Q ss_pred             -chhhhHHHHHhcH------------HHHHHHH-hcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCC
Q psy5402          88 -GCSSVLFPRIFGN------------SVASELL-YTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLP  148 (198)
Q Consensus        88 -~g~~~~l~~~vG~------------~~a~~ll-l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~  148 (198)
                       +.....+.+.+-.            ....++. ..-+..++--|.+.|+||.|+++.+.......+++...+.|
T Consensus       491 Egaa~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~p~~aA~r~~vD~VIdP~~TR~~l~~~~~~~~~~p  565 (588)
T 3gf3_A          491 ETAANAMYSRKLVKAKKAGEDLQPIIGKMNDMIQMYTDKSRPKYCTEKGMVDEIVDMTEVRPYIQAFTEAAYQNP  565 (588)
T ss_dssp             HHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHTTSHHHHHHTTSSSEECCGGGHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHhhhHHhhhhccccccchHHHHHHHHHHHHHHhCCHHHHHhcCCCCeeeCHHHHHHHHHHHHHHHHcCC
Confidence             3333333332210            0000100 01113578889999999999999998888877777665443

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=96.35  E-value=0.013  Score=54.62  Aligned_cols=31  Identities=26%  Similarity=0.290  Sum_probs=30.1

Q ss_pred             CCcEEEEEcCccchHHHHHhhhcCEEEeecC
Q psy5402          30 PKPLIAIVNGPAIGISATTLALCDIVFASDT   60 (198)
Q Consensus        30 ~kp~IA~v~G~a~GgG~~lalacD~~ia~~~   60 (198)
                      ..|+|+.|.|.|.|||..++..||++|+.++
T Consensus       259 ~iP~IsvV~G~~~GGgAy~~~lgD~vI~~~~  289 (793)
T 2x24_A          259 EIVTISMVSCRALGIGAYLVRLGQRVIQVEN  289 (793)
T ss_dssp             HSCEEEEECSEEETHHHHHHHHTCCEEEETT
T ss_pred             CCCEEEEEecCCchHHHHHHhhCCeEEEecc
Confidence            5999999999999999999999999999998

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=96.16  E-value=0.073  Score=47.84  Aligned_cols=115  Identities=12%  Similarity=0.037  Sum_probs=72.2

Q ss_pred             hhHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhh----hcCEEEeecCCcccCCCcccceEEEecccccccccCCch
Q psy5402          14 DTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLA----LCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC   89 (198)
Q Consensus        14 ~~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lal----acD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g   89 (198)
                      .......+++.++.+.+.|+|+.|-|.++|||..-..    .+|++++.++            +.++.-       .+-+
T Consensus       409 Gi~~~gAk~~~a~~~a~vP~itvi~g~~~Ggg~~am~~~~~~~d~~~a~p~------------A~i~Vm-------gpeg  469 (555)
T 3u9r_B          409 GIAKHGAKLVTAVACARVPKFTVLIGGSFGAGNYGMCGRAYDPRFLWMWPN------------ARIGVM-------GGEQ  469 (555)
T ss_dssp             THHHHHHHHHHHHHHCCSCEEEEEEEEEETTHHHHTTCGGGCCSEEEECTT------------CEEESS-------CHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEEeCCccchhhHhhcCccCCCCeEEEcCC------------cEEEcC-------CHHH
Confidence            3445677889999999999999999999988754332    3799999888            777642       2222


Q ss_pred             hhhHHH---H-Hh---c----H--HHH-HH-HH-hcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcC
Q psy5402          90 SSVLFP---R-IF---G----N--SVA-SE-LL-YTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL  147 (198)
Q Consensus        90 ~~~~l~---~-~v---G----~--~~a-~~-ll-l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~  147 (198)
                      .+..+.   + .+   |    .  ..+ ++ +. ..-+..++-.|.+.|++|.|+++.+.........+.+...
T Consensus       470 aa~il~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~y~~~~~p~~aa~r~~vD~vIdP~~TR~~l~~~l~~~~~~  543 (555)
T 3u9r_B          470 AAGVLAQVKREQAERAGQQLGVEEEAKIKAPILEQYEHQGHPYYSSARLWDDGVIDPAQTREVLALALSAALNA  543 (555)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHSHHHHHHTTSSSCBCCGGGHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHHhCCHHHHhhccccCcccChHHHHHHHHHHHHHHhcC
Confidence            222221   1 00   0    0  000 00 00 0011236667778999999999998887776666655544

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=94.08  E-value=0.21  Score=46.69  Aligned_cols=46  Identities=13%  Similarity=0.072  Sum_probs=34.3

Q ss_pred             hHHHHHHHHHHHhcCCCcEEEEE--cCccchHHHHHh---hhcCE--EEeecC
Q psy5402          15 TSITLQKYVAAFIDYPKPLIAIV--NGPAIGISATTL---ALCDI--VFASDT   60 (198)
Q Consensus        15 ~~~~~~~~~~~i~~~~kp~IA~v--~G~a~GgG~~la---lacD~--~ia~~~   60 (198)
                      ......+++.++.++.+|+|+.|  .|-+.||++...   +..|+  ++|.++
T Consensus       506 i~~~gAkll~A~a~a~VP~itvI~r~Ge~~GGa~~~~~~~~~~d~~ev~Awp~  558 (793)
T 2x24_A          506 VLKFGAYIVDGLRKYRQPVLIYIPPYAEVRGGSWAVMDTSINPLCIEMYADRE  558 (793)
T ss_dssp             HHHHHHHHHHHHHTCCSCEEEEECTTCEEEHHHHHTTCGGGSTTTEEEEEETT
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEecCCcccchhHHhhhcccCccHHHHhhhcc
Confidence            34566788999999999999999  899887665332   24565  566666

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=84.88  E-value=1.4  Score=40.91  Aligned_cols=46  Identities=24%  Similarity=0.285  Sum_probs=36.5

Q ss_pred             hhHHHHHHHHHHHhcCCCcEEEEEc--CccchHHHHHhhh----cCE--EEeecC
Q psy5402          14 DTSITLQKYVAAFIDYPKPLIAIVN--GPAIGISATTLAL----CDI--VFASDT   60 (198)
Q Consensus        14 ~~~~~~~~~~~~i~~~~kp~IA~v~--G~a~GgG~~lala----cD~--~ia~~~   60 (198)
                      .......+++.++.+++.|+|+.|-  |-+.||++ ++++    +|+  ++|.++
T Consensus       491 Gi~k~gAkll~A~a~a~VP~itVI~RkGe~~GGA~-~am~~~~~ad~~~v~Awp~  544 (758)
T 3k8x_A          491 EVLKYGSFIVDALVDYKQPIIIYIPPTGELRGGSW-VVVDPTINADQMEMYADVN  544 (758)
T ss_dssp             THHHHHHHHHHHHHTCCSCEEEEECTTCEEETHHH-HTTCGGGSTTTEEEEEETT
T ss_pred             cHHHHHHHHHHHHHhCCCCEEEEEecCCccchHHH-HHhCcccCCCHHHHhcCCC
Confidence            3455677899999999999999998  99998887 5555    555  777777

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	198
d1mj3a_	260	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat	7e-31
d1uiya_	253	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {The	9e-14
d2f6qa1	245	c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-C	7e-13
d1hzda_	266	c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [T	3e-10
d1pjha_	266	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	3e-09
d1dcia_	275	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	2e-08
d1q52a_	297	c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacter	3e-08
d2fw2a1	258	c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Hum	7e-08
d1ef8a_	261	c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Esc	9e-07
d1nzya_	269	c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Ps	1e-06
d1sg4a1	249	c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-d	4e-04

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 260

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  111 bits (278), Expect = 7e-31
 Identities = 47/180 (26%), Positives = 75/180 (41%), Gaps = 12/180 (6%)

Query: 19  LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTP 78
              +        KP+IA VNG A+G       +CDI++A + A             F  P
Sbjct: 86  FLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKA------------QFGQP 133

Query: 79  FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLW 138
             L G  P    +    R  G S+A E++ TG +++AQ+A Q G VS +F  E +  +  
Sbjct: 134 EILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAI 193

Query: 139 PRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198
                 A      +  AK+ V       L E NK E K     + +++    ++AF  ++
Sbjct: 194 QCAEKIANNSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKR 253

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} Length = 253

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

 Score = 65.5 bits (158), Expect = 9e-14
 Identities = 42/171 (24%), Positives = 65/171 (38%), Gaps = 13/171 (7%)

Query: 28  DYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPE 87
            YPKP +A VNGPA+   A     CD+V   + A                   ++     
Sbjct: 92  TYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEA-------------RLGYTEVKIGFVA 138

Query: 88  GCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL 147
              SV+  R  G   A +LL TGR + A+EA   G V+ +    +   +        AK 
Sbjct: 139 ALVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKN 198

Query: 148 PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198
            P S+   K+L+       L +  +          E+ +    I AFF ++
Sbjct: 199 APTSLRLTKELLLALPGMGLEDGFRLAALANAWVRETGDLAEGIRAFFEKR 249

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} Length = 245

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (151), Expect = 7e-13
 Identities = 78/171 (45%), Positives = 108/171 (63%), Gaps = 12/171 (7%)

Query: 19  LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTP 78
           L+++V  FID+PKPLIA+VNGPA+GIS T L L D V+ASD            +ATFHTP
Sbjct: 87  LREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASD------------RATFHTP 134

Query: 79  FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLW 138
           F+  G +PEGCSS  FP+I   + A+E+L  G+KL A EA   G V+ VF     ++++W
Sbjct: 135 FSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVW 194

Query: 139 PRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMN 189
            R+ A+AKLPP ++  +K+++R      LH  N  EC  L+ RW S+E  N
Sbjct: 195 TRLKAFAKLPPNALRISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTN 245

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 3e-10
 Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 4/130 (3%)

Query: 73  ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 132
           A      T   + P G  +   PR  G S+A EL+++ R L+ +EA   G +S V    +
Sbjct: 130 AKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQ 189

Query: 133 IERDLWPRIHAWAKL----PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFM 188
                + +    A+      P +M  AK  +   M   L      E     +   +++ +
Sbjct: 190 EGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRL 249

Query: 189 NAITAFFNRK 198
             + AF  ++
Sbjct: 250 EGLLAFKEKR 259

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.8 bits (125), Expect = 3e-09
 Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 6/86 (6%)

Query: 107 LYTGRKLNAQEALQYGFVSGVF-----TTEEIERDLWPRI-HAWAKLPPQSMIFAKQLVR 160
           L   +        + GF+S  F       E     +   +      L   S +  K+L++
Sbjct: 174 LMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLK 233

Query: 161 VPMLSMLHEANKRECKRLEERWESEE 186
              +   ++AN  E     + W   E
Sbjct: 234 SNHIDAFNKANSVEVNESLKYWVDGE 259

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 275

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.9 bits (120), Expect = 2e-08
 Identities = 33/180 (18%), Positives = 60/180 (33%), Gaps = 12/180 (6%)

Query: 20  QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPF 79
           QK        PKP+IA ++G  IG     ++ CDI + +  A      V V  A      
Sbjct: 97  QKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTL 156

Query: 80  TLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEI-ERDLW 138
                     S V         +            A EAL  G VS VF  +++     +
Sbjct: 157 QRLPKVIGNRSLVNELTFTARKM-----------MADEALDSGLVSRVFPDKDVMLNAAF 205

Query: 139 PRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198
                 +   P ++  +K  +       + E+            ++++ + ++ A   +K
Sbjct: 206 ALAADISSKSPVAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKK 265

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 297

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 50.1 bits (118), Expect = 3e-08
 Identities = 36/198 (18%), Positives = 63/198 (31%), Gaps = 12/198 (6%)

Query: 1   MTNNPTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDT 60
            + +  D ++      + + +        PK +I +VNG A G   +   +CD       
Sbjct: 101 ASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCD------- 153

Query: 61  AILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQ 120
                       A F       G    G  S    R  G   A E+ + GR   A++  Q
Sbjct: 154 ----LTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQ 209

Query: 121 YGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEE 180
            G V+ V    E+E              PQ+    K    + +   L        +    
Sbjct: 210 MGAVNAVAEHAELETVGLQWAAEINAKSPQAQRMLKFAFNL-LDDGLVGQQLFAGEATRL 268

Query: 181 RWESEEFMNAITAFFNRK 198
            + ++E +    AF  ++
Sbjct: 269 AYMTDEAVEGRDAFLQKR 286

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 7e-08
 Identities = 46/134 (34%), Positives = 73/134 (54%)

Query: 65  NHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFV 124
           +      +A F TP+T  G +P+GCSS+ FP++ G + A+E+L  GRKL A+EA   G V
Sbjct: 121 DLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLV 180

Query: 125 SGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWES 184
           S VF T    +++  +I   A      +   K LVR  +   L +AN+REC+ L + W S
Sbjct: 181 SQVFLTGTFTQEVMIQIKELASYNAIVLEECKALVRCNIKLELEQANERECEVLRKIWSS 240

Query: 185 EEFMNAITAFFNRK 198
            + + ++  +   K
Sbjct: 241 AQGIESMLKYVENK 254

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} Length = 261

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

 Score = 45.6 bits (106), Expect = 9e-07
 Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 2/136 (1%)

Query: 65  NHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFV 124
           +  +    +TF       G+           R  G  +  EL++T   + AQ AL  G +
Sbjct: 119 DLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGIL 178

Query: 125 SGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRV--PMLSMLHEANKRECKRLEERW 182
           + V   EE+E       H  ++  P ++   K+ +RV     +M  +  +R        +
Sbjct: 179 NHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEELRVLGEAHTMNSDEFERIQGMRRAVY 238

Query: 183 ESEEFMNAITAFFNRK 198
           +SE++   + AF  ++
Sbjct: 239 DSEDYQEGMNAFLEKR 254

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} Length = 269

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

 Score = 45.6 bits (106), Expect = 1e-06
 Identities = 31/127 (24%), Positives = 49/127 (38%)

Query: 72  QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 131
            A F   +   G+  +  +S    RI G   A EL+ T R L  +EA  +G VS V+  +
Sbjct: 130 SAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKD 189

Query: 132 EIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAI 191
           E     W      A  P    + AK+      +  + E  + E + +        FM  +
Sbjct: 190 EFREVAWKVARELAAAPTHLQVMAKERFHAGWMQPVEECTEFEIQNVIASVTHPHFMPCL 249

Query: 192 TAFFNRK 198
           T F +  
Sbjct: 250 TRFLDGH 256

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 249

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 4e-04
 Identities = 16/84 (19%), Positives = 28/84 (33%)

Query: 108 YTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSML 167
             G      EALQ G V  V   E+++      I  W  +P  +    K ++R    S L
Sbjct: 164 QLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAIPDHARQLTKAMMRKATASRL 223

Query: 168 HEANKRECKRLEERWESEEFMNAI 191
                 + +        +    ++
Sbjct: 224 VTQRDADVQNFVSFISKDSIQKSL 247

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	198
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	100.0
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	100.0
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	100.0
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	100.0
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	100.0
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	100.0
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	100.0
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	100.0
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	100.0
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	100.0
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	100.0
d2cbya1	179	Clp protease, ClpP subunit {Mycobacterium tubercul	98.44
d1yg6a1	183	Clp protease, ClpP subunit {Escherichia coli [TaxI	98.38
d1y7oa1	192	Clp protease, ClpP subunit {Streptococcus pneumoni	98.31
d2f6ia1	190	Clp protease, ClpP subunit {Plasmodium falciparum	98.28
d1tg6a1	193	Clp protease, ClpP subunit {Human (Homo sapiens),	98.24
d2f9ya1	316	Acetyl-coenzyme A carboxylase carboxyl transferase	98.06
d1on3a1	253	Methylmalonyl-CoA carboxyltransferase (transcarbox	97.98
d1xnya1	258	Propionyl-CoA carboxylase complex B subunit, PccB	97.88
d2f9yb1	263	Acetyl-coenzyme A carboxylase carboxyl transferase	97.87
d2a7sa1	258	Propionyl-CoA carboxylase complex B subunit, PccB	97.8
d1vrga1	251	Propionyl-CoA carboxylase complex B subunit, PccB	97.78
d1pixa2	287	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	97.68
d1vrga2	264	Propionyl-CoA carboxylase complex B subunit, PccB	96.96
d2a7sa2	271	Propionyl-CoA carboxylase complex B subunit, PccB	96.87
d1uyra1	333	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	96.79
d1on3a2	264	Methylmalonyl-CoA carboxyltransferase (transcarbox	96.67
d1xnya2	263	Propionyl-CoA carboxylase complex B subunit, PccB	96.64
d1pixa3	299	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	96.21
d1uyra2	404	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	91.09

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-46  Score=304.81  Aligned_cols=186  Identities=36%  Similarity=0.614  Sum_probs=176.9

Q ss_pred             CCCCccCchhhhhhh-----------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcc
Q psy5402           1 MTNNPTDLINEDTDT-----------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVF   69 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~-----------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~   69 (198)
                      .||+|.|++++....           ...+++++..+.++||||||+|||+|+|||++++++||+||++++         
T Consensus        58 ~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~---------  128 (258)
T d2fw2a1          58 VFCCGLDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEK---------  128 (258)
T ss_dssp             CSBCCBCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETT---------
T ss_pred             ccccccccchhhhcccccccchhhHHHHHHHHHHHhhhccceeeeeecccccccccccccccccccceecc---------
Confidence            489999999985431           235678899999999999999999999999999999999999999         


Q ss_pred             cceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCH
Q psy5402          70 VLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP  149 (198)
Q Consensus        70 ~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~  149 (198)
                         ++|++||+++|++|++|+++++++++|..++++++++|++++|+||+++||||+|||++++.+++.++++++++.||
T Consensus       129 ---a~f~~pe~~~Gl~p~~g~~~~l~r~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~  205 (258)
T d2fw2a1         129 ---AWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNA  205 (258)
T ss_dssp             ---CEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHTTCCEEEHHHHHHTTSCSEEECSTTHHHHHHHHHHHHTTSCH
T ss_pred             ---cceeeccccccccccccccccchhhcCccccchhhccCcccccccccccccccccccccccccccchhhhhhhhhhH
Confidence               99999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         150 QSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       150 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      .+++.+|+.++.....++++.++.|...+.++|.++|++||+++|+|||
T Consensus       206 ~a~~~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~Egi~af~EKR  254 (258)
T d2fw2a1         206 IVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVENK  254 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCC
Confidence            9999999999998888899999999999999999999999999999998

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.2e-45  Score=301.18  Aligned_cols=185  Identities=26%  Similarity=0.369  Sum_probs=175.1

Q ss_pred             CCCccCchhhhhhhHH-----HHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEe
Q psy5402           2 TNNPTDLINEDTDTSI-----TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFH   76 (198)
Q Consensus         2 ~s~G~Dl~~~~~~~~~-----~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~   76 (198)
                      ||+|.|++++......     .+.+++..+.++||||||+|||+|+|||++|+++|||||++++            ++|+
T Consensus        64 F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~------------a~f~  131 (260)
T d1mj3a_          64 FAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEK------------AQFG  131 (260)
T ss_dssp             EECCBCHHHHTTCCHHHHHHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETT------------CEEE
T ss_pred             ccccchhhhhhccchhhhhHHHHHHHHHHhccCCCeEEEEEcCeEeHHHHHHHHHCCEEEEcCC------------CEEE
Confidence            8999999998654432     3455678899999999999999999999999999999999999            9999


Q ss_pred             cccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q psy5402          77 TPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAK  156 (198)
Q Consensus        77 ~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~K  156 (198)
                      +||+++|++|++|+++++++++|.++|++++++|++|+++||+++||||+|++.+++.+.+.++++++++.+|.+++.+|
T Consensus       132 ~pe~~~Gl~p~~~~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~a~~~a~~i~~~~~~a~~~~K  211 (260)
T d1mj3a_         132 QPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVAMAK  211 (260)
T ss_dssp             CGGGGGTCCCCSSTTTHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             CchhccCcCCcccHHHHHHHHhCHHHHHHHHHcCcccCchhhccCCCceeeecccccccccccccccccchhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         157 QLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       157 ~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +.++.....++++.++.|.+.+..++.++|++|++++|++||
T Consensus       212 ~~l~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egi~aFleKR  253 (260)
T d1mj3a_         212 ESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKR  253 (260)
T ss_dssp             HHHHGGGSSCHHHHHHHHHHHHHHGGGSHHHHHHHHHHHTTS
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCC
Confidence            999999888999999999999999999999999999999998

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.8e-44  Score=296.06  Aligned_cols=185  Identities=15%  Similarity=0.170  Sum_probs=171.2

Q ss_pred             CCCCccCchhhhhhh---------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccc
Q psy5402           1 MTNNPTDLINEDTDT---------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVL   71 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~---------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~   71 (198)
                      .||+|+|++++....         ...+++++..+.++||||||+|||+|+|||++|+++||+||++++           
T Consensus        65 ~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~-----------  133 (263)
T d1wz8a1          65 VFSAGGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKG-----------  133 (263)
T ss_dssp             CCBCCBCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETT-----------
T ss_pred             cccccchhhhhhhhcccccccccchhhhhHHHHHhhhhhcceeeecccccccccccccccccccccccc-----------
Confidence            489999999875321         224567888999999999999999999999999999999999999           


Q ss_pred             eEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHH
Q psy5402          72 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQS  151 (198)
Q Consensus        72 ~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a  151 (198)
                       ++|++||+++|++|++|+++++++++|..+|++++++|+.++|+||+++||||+|+|++++.+++.++++++++.||.+
T Consensus       134 -a~f~~pe~~~Gl~p~~~~~~~l~~~~G~~~a~~l~l~g~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a  212 (263)
T d1wz8a1         134 -TRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERLAQGPKEA  212 (263)
T ss_dssp             -CEEECCHHHHTSCCTTTHHHHTHHHHCHHHHHHHHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHH
T ss_pred             -ccccccccccccccccccccccccccccchhhhhcccccccchhHHHhcCCcccccchhhhhHHHHHHHHHhhccHHHH
Confidence             9999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         152 MIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       152 ~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      ++.+|+.+++...... +.++.|...+...+.++|++|++++|+|||
T Consensus       213 l~~~K~~l~~~~~~~~-~~~~~e~~~~~~~~~s~d~~Egi~Af~eKR  258 (263)
T d1wz8a1         213 LHHTKHALNHWYRSFL-PHFELSLALEFLGFSGKELEEGLKALKEKR  258 (263)
T ss_dssp             HHHHHHHHHHHHHTTH-HHHHHHHHHHHHGGGSHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHhChH-HHHHHHHHHHHHHccCHHHHHHHHHHhCCC
Confidence            9999999998766544 557888888999999999999999999998

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-43  Score=292.25  Aligned_cols=186  Identities=22%  Similarity=0.294  Sum_probs=172.4

Q ss_pred             CCCCccCchhhhhhh-------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceE
Q psy5402           1 MTNNPTDLINEDTDT-------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA   73 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~-------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a   73 (198)
                      .||+|.|++++....       ...+++++..|.++||||||+|||+|+|||++|+++||+||++++            +
T Consensus        63 ~f~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~------------a  130 (266)
T d1hzda_          63 IFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASS------------A  130 (266)
T ss_dssp             EEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETT------------C
T ss_pred             cccccccccccccccchhhhhhhhHHHHHHHHHhcCCcccccccccccccccceeccccceeeecCC------------c
Confidence            379999998885433       346678899999999999999999999999999999999999999            9


Q ss_pred             EEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchh----HHHHHHHHHHHHhcCCH
Q psy5402          74 TFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE----IERDLWPRIHAWAKLPP  149 (198)
Q Consensus        74 ~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~----l~~~a~~~a~~la~~~~  149 (198)
                      +|++||+++|++|++|+++++++++|..+|++++++|+.++|+||+++||||+|||+++    +.+.+..+++++++.||
T Consensus       131 ~f~~pe~~~G~~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~a~~~a~~i~~~~p  210 (266)
T d1hzda_         131 KMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGP  210 (266)
T ss_dssp             EEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHTCEEEHHHHHHHTSCSEEECCCTTSCHHHHHHHHHHHTTTTSCH
T ss_pred             EEeecccceeecCCccceeeehhhhHHHHHHhhhccCCccCHHHhhcccccccccChhhhhhHHHHHHHHHHHhcccCCh
Confidence            99999999999999999999999999999999999999999999999999999999866    45666677788889999


Q ss_pred             HHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         150 QSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       150 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      .+++.+|+.+++....++++.++.|...+..++.++|++|++++|+|||
T Consensus       211 ~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR  259 (266)
T d1hzda_         211 VAMRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKR  259 (266)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCC
Confidence            9999999999999888999999999999999999999999999999998

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=100.00  E-value=2.9e-43  Score=290.62  Aligned_cols=186  Identities=23%  Similarity=0.333  Sum_probs=175.9

Q ss_pred             CCCCccCchhhhhhh------------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCc
Q psy5402           1 MTNNPTDLINEDTDT------------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPV   68 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~------------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~   68 (198)
                      .||+|.|++++....            ...+++++.++.++||||||+|||+|+|||++|+++||+||++++        
T Consensus        59 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~--------  130 (269)
T d1nzya_          59 AFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADS--------  130 (269)
T ss_dssp             CSBCCBCGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETT--------
T ss_pred             cccchhhHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhcchhehhhhhhcCCCceeeeecccHhhhhhh--------
Confidence            489999999884321            224567889999999999999999999999999999999999999        


Q ss_pred             ccceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCC
Q psy5402          69 FVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLP  148 (198)
Q Consensus        69 ~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~  148 (198)
                          ++|++||.++|+.|++|+++++++++|..++++++++|+.++|+||+++||||+|+|++++.+++.++++++++.|
T Consensus       131 ----a~~~~~~~~~g~~~~~g~~~~l~~~ig~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~  206 (269)
T d1nzya_         131 ----AKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVARELAAAP  206 (269)
T ss_dssp             ----CEEECCHHHHTCCCCTTHHHHHHHHHHHHHHHHHHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHHHHHHHHHHSC
T ss_pred             ----hhhcccccccccccccccccccccccChhhhhhccccccccchhHHHHcCCccccccccccccchhhhhhhhhhhh
Confidence                9999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         149 PQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       149 ~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      |.+++.+|+.+++....+++++++.|...+.+.+.++|++|++.+|+|||
T Consensus       207 ~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~e~v~aflekr  256 (269)
T d1nzya_         207 THLQVMAKERFHAGWMQPVEECTEFEIQNVIASVTHPHFMPCLTRFLDGH  256 (269)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHSTTHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHCCC
Confidence            99999999999999889999999999999999999999999999999987

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.4e-43  Score=291.42  Aligned_cols=185  Identities=21%  Similarity=0.296  Sum_probs=168.2

Q ss_pred             CCCccCchhhhhhh------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEE
Q psy5402           2 TNNPTDLINEDTDT------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATF   75 (198)
Q Consensus         2 ~s~G~Dl~~~~~~~------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~   75 (198)
                      ||+|.|++++....      .+.+++++..|.++||||||+|||+|+|||++|+++||+||++++            ++|
T Consensus        62 F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~------------a~~  129 (261)
T d1ef8a_          62 FSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAAST------------STF  129 (261)
T ss_dssp             EECCSCSTTC-----CTTCTTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETT------------CEE
T ss_pred             hcccccccccccCCccccccccchhhhHHHHHhCchhhhhcccccccchhhhhhhhhhhhhhhHh------------HHH
Confidence            89999999985432      346789999999999999999999999999999999999999999            999


Q ss_pred             ecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHH
Q psy5402          76 HTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFA  155 (198)
Q Consensus        76 ~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~  155 (198)
                      ++||+++|++|++++++++++.+|..++++++++|+.|+|+||+++||||+++|++++.+++.++++++++.||.+++.+
T Consensus       130 ~~pe~~~Gl~~~~~~~~~l~r~~g~~~a~~~~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~~~a~~~~  209 (261)
T d1ef8a_         130 SMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVI  209 (261)
T ss_dssp             ECCHHHHTCCCCHHHHHTTSSSSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             hhhhcccccccccccccccccccCccccccccccCceEcHHHHHHcCCcceeeechhhhhhhHHHHHHHHhcCcHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhchhhhcH--HHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         156 KQLVRVPMLSML--HEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       156 K~~l~~~~~~~~--~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      |+.++.......  ...++.+...+..++.++|++||+++|+|||
T Consensus       210 K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~D~~Egi~AfleKR  254 (261)
T d1ef8a_         210 KEELRVLGEAHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKR  254 (261)
T ss_dssp             HHHHHHHHHCCCCCHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHhcCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCC
Confidence            999987655433  3445556677888999999999999999998

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.1e-42  Score=282.32  Aligned_cols=184  Identities=26%  Similarity=0.331  Sum_probs=171.8

Q ss_pred             CCCccCchhhhhhh----------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccc
Q psy5402           2 TNNPTDLINEDTDT----------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVL   71 (198)
Q Consensus         2 ~s~G~Dl~~~~~~~----------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~   71 (198)
                      ||+|+|++++....          ...++.++..|.++||||||+|||+|+|||++|+++|||||++++           
T Consensus        56 f~aG~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~ria~~~-----------  124 (253)
T d1uiya_          56 FSAGADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEE-----------  124 (253)
T ss_dssp             SBCCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETT-----------
T ss_pred             ccccchhHHhhhccccCcccccchhhhhhhhhhHHhcCCCCEEEEeCeEEehhhHHHHhhhhhhhhhhh-----------
Confidence            79999998775322          234567788999999999999999999999999999999999999           


Q ss_pred             eEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHH
Q psy5402          72 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQS  151 (198)
Q Consensus        72 ~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a  151 (198)
                       ++|++||.++|++|. ++++++++++|.++|++++++|++++++||+++||||+|+|++++.+.+.++++++++.|+.+
T Consensus       125 -a~~~~~e~~~g~~~~-~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a  202 (253)
T d1uiya_         125 -ARLGYTEVKIGFVAA-LVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKNAPTS  202 (253)
T ss_dssp             -CEEECCHHHHTCCCH-HHHHHHHHHSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHHHSCHHH
T ss_pred             -hHHhhhhcccccccc-cchhhhhcccCHHHHHHHhhcCcCCCHHHHHHhCCCcccccccccchhHHHHHHhhcccchHH
Confidence             999999999998875 567789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         152 MIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       152 ~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      +..+|+.++.....++++.++.|...+..++.++|++|++++|+|||
T Consensus       203 ~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~af~eKR  249 (253)
T d1uiya_         203 LRLTKELLLALPGMGLEDGFRLAALANAWVRETGDLAEGIRAFFEKR  249 (253)
T ss_dssp             HHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCC
Confidence            99999999999889999999999999999999999999999999998

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.4e-42  Score=284.44  Aligned_cols=186  Identities=23%  Similarity=0.339  Sum_probs=171.2

Q ss_pred             CCCCccCchhhhhhh------------------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCc
Q psy5402           1 MTNNPTDLINEDTDT------------------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAI   62 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~------------------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~   62 (198)
                      .||+|+|+.++....                  ...+++++..+.++||||||+|||+|+|||++|+++|||||++++  
T Consensus        60 ~F~aG~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~--  137 (275)
T d1dcia_          60 MFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQD--  137 (275)
T ss_dssp             CSBCCBCHHHHHHHHTSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETT--
T ss_pred             ccccCccHHHhhhcccccccccccchhhhhccchhhhHHHHHHHHhcCCCEEEEEeeEeehhhHHHHhhcCchhhccC--
Confidence            489999998875421                  124567888999999999999999999999999999999999999  


Q ss_pred             ccCCCcccceEEEecccccccccCCchhhhHHHHHhcH-HHHHHHHhcCCCCCHHHHHhcCCcccccCchh-HHHHHHHH
Q psy5402          63 LLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGN-SVASELLYTGRKLNAQEALQYGFVSGVFTTEE-IERDLWPR  140 (198)
Q Consensus        63 ~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~-~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~-l~~~a~~~  140 (198)
                                ++|++||+++|++|++|+++++++++|. ..+++++++|+.++++||+++||||+|+|+++ +.+++.++
T Consensus       138 ----------a~f~~pe~~~Gl~p~~~~~~~~~~~~g~~~~~~~ll~~g~~~~a~eA~~~Glv~~v~~~~~~l~~~~~~~  207 (275)
T d1dcia_         138 ----------AFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFAL  207 (275)
T ss_dssp             ----------CEEECCGGGGTSCCCSSHHHHGGGTCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHHHH
T ss_pred             ----------ccccchhcccccccccccccccccccccccccccccccccccchhhhccCCCceeeeehhhhhhhccccc
Confidence                      9999999999999999999999999995 55678999999999999999999999998755 67888999


Q ss_pred             HHHHhcCCHHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402         141 IHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       141 a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr  198 (198)
                      ++++++.+|.+++.+|+.++.....+++++++.|...+..++.++|++||+++|+|||
T Consensus       208 a~~i~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~Egi~AfleKR  265 (275)
T d1dcia_         208 AADISSKSPVAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKK  265 (275)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSHHHHHHHHHHHTTC
T ss_pred             ccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCC
Confidence            9999999999999999999998888999999999999999999999999999999998

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-41  Score=278.02  Aligned_cols=176  Identities=45%  Similarity=0.801  Sum_probs=162.8

Q ss_pred             CCCCccCchhhhhhh-----------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcc
Q psy5402           1 MTNNPTDLINEDTDT-----------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVF   69 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~-----------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~   69 (198)
                      .||+|.|++++....           ...+++++.+|.++||||||+|||+|+|||++++++||+||++++         
T Consensus        58 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIa~v~G~a~GgG~~la~~~D~~ia~~~---------  128 (245)
T d2f6qa1          58 YYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDR---------  128 (245)
T ss_dssp             CSBCCBCC----CCCTTHHHHHHHHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETT---------
T ss_pred             cccCCccchhhhcccccccccccchhhhHHHHHHhhhhhcCCceEEEECCccccccccchhhhhhhhhhcc---------
Confidence            489999999885321           224567889999999999999999999999999999999999999         


Q ss_pred             cceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCH
Q psy5402          70 VLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP  149 (198)
Q Consensus        70 ~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~  149 (198)
                         ++|++||+++|++|++|+++++++++|..+|++++++|+.++|+||+++||||+|+|++++.+++.++++++++.||
T Consensus       129 ---a~f~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~  205 (245)
T d2f6qa1         129 ---ATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPP  205 (245)
T ss_dssp             ---CEEECCTGGGTCCCCTTHHHHHHHHHCHHHHHHHHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHHHHHHHTTSCH
T ss_pred             ---CeEecccccCCCCccccchhhcccccccchhhhhcccccccccccccccccccccCCcchHHHHHHHHHHHHHcCCH
Confidence               99999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHH
Q psy5402         150 QSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFM  188 (198)
Q Consensus       150 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~  188 (198)
                      .+++.+|+.++......+++.++.|.+.+..+|.++|++
T Consensus       206 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~  244 (245)
T d2f6qa1         206 NALRISKEVIRKREREKLHAVNAEECNVLQGRWLSDECT  244 (245)
T ss_dssp             HHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred             HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcCcccC
Confidence            999999999999888889999999999999999999986

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=8.6e-41  Score=279.27  Aligned_cols=168  Identities=22%  Similarity=0.245  Sum_probs=155.9

Q ss_pred             HHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhhHHHHHh
Q psy5402          19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIF   98 (198)
Q Consensus        19 ~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~v   98 (198)
                      +.+++..|.++||||||+|||+|+|||++|+++||+||++++.           ++|++||+++|++|+++++++|++++
T Consensus       119 ~~~~~~~i~~~~kPvIaav~G~a~GGG~~lal~~D~~ia~~~~-----------~~f~~pe~~~Gl~p~~~~~~~L~r~i  187 (297)
T d1q52a_         119 ILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREY-----------ARFKQTDADVGSFDGGYGSAYLARQV  187 (297)
T ss_dssp             HHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTT-----------CEEECCGGGGTCCCCSTTTHHHHHHH
T ss_pred             HHHHHHHHHhcCCeEEEEEcceeeeccchhhhhhhcccccccc-----------ccceeeeecccccccccccccccccc
Confidence            5678889999999999999999999999999999999998762           68999999999999999999999999


Q ss_pred             cHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHHHHHhhchhhhcHHHHHHHHHHHH
Q psy5402          99 GNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRL  178 (198)
Q Consensus        99 G~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~  178 (198)
                      |.+++++++++|+.++++||+++||||+|+|++++.+++.++++++++.||.+++.+|+.++... ..+.+....+.+.+
T Consensus       188 G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~el~~~~~~~a~~l~~~~~~a~~~~K~~~~~~~-~~~~~~~~~~~~~~  266 (297)
T d1q52a_         188 GQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAKSPQAQRMLKFAFNLLD-DGLVGQQLFAGEAT  266 (297)
T ss_dssp             CHHHHHHHHHHCCEECHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTT-THHHHHHHHHHHHH
T ss_pred             CccceeeccccccccchHhhhhhccccccCchHHhhHHHHHHhhhhccCCHHHHHHHHHHHHHhh-cChHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998864 44555555677778


Q ss_pred             HHHhCCHHHHHHHHHHHccC
Q psy5402         179 EERWESEEFMNAITAFFNRK  198 (198)
Q Consensus       179 ~~~~~~~~~~e~~~af~~kr  198 (198)
                      ..++.++|++||+++|+|||
T Consensus       267 ~~~~~s~d~~Egv~AF~eKR  286 (297)
T d1q52a_         267 RLAYMTDEAVEGRDAFLQKR  286 (297)
T ss_dssp             HHHHTSHHHHHHHHHHHTTS
T ss_pred             HHHhcCHHHHHHHHHHhCCC
Confidence            88999999999999999998

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=7.5e-41  Score=281.53  Aligned_cols=186  Identities=19%  Similarity=0.184  Sum_probs=164.6

Q ss_pred             CCCCccCchhhhhhh----------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCccc
Q psy5402           1 MTNNPTDLINEDTDT----------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFV   70 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~----------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~   70 (198)
                      .||+|.|++++....          ...+++++..|.++||||||+|||+|+|||++|+++||+||++++          
T Consensus        64 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~elal~cD~ria~~~----------  133 (310)
T d1wdka4          64 VFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADS----------  133 (310)
T ss_dssp             SSBBCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETT----------
T ss_pred             CccchhhhhhhhhcccccchhhhhhhhHHHHHHHHhhcCCccceeeccccccccccccchhhhhhhcccc----------
Confidence            389999999985321          124668899999999999999999999999999999999999999          


Q ss_pred             ceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHH
Q psy5402          71 LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQ  150 (198)
Q Consensus        71 ~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~  150 (198)
                        ++|++||+++|++|++|++++|++++|..++++++++|+.++++||+++||||+|+|++++.+.+.++++++++.++.
T Consensus       134 --a~f~~pe~~~Gl~P~~gg~~~L~r~iG~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~  211 (310)
T d1wdka4         134 --AKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELD  211 (310)
T ss_dssp             --CEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSC
T ss_pred             --ceecccccccCCCccccchhhhhhhhhhhhhhhhhccccccCHHHHhhccCccEEccHHHHHHHHHHHHHHHHhcccc
Confidence              999999999999999999999999999999999999999999999999999999999999999999999999876532


Q ss_pred             HH---------------------------------------HHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHH
Q psy5402         151 SM---------------------------------------IFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAI  191 (198)
Q Consensus       151 a~---------------------------------------~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~  191 (198)
                      ..                                       ..+.+.++.....+++++++.|.+.|.+++.+++.++++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pA~~~~l~~v~~~~~~~~~~~L~~E~~~f~~l~~t~~a~~~i  291 (310)
T d1wdka4         212 YKAKRQPKLEKLKLNAIEQMMAFETAKGFVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLI  291 (310)
T ss_dssp             HHHHHGGGGSCCSCCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred             hhhhhhhhcccccccchhhhHHHHHhhhhhhhhccCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            11                                       112234445555678999999999999999999999999


Q ss_pred             HHHHccC
Q psy5402         192 TAFFNRK  198 (198)
Q Consensus       192 ~af~~kr  198 (198)
                      ++|++||
T Consensus       292 ~aF~~kr  298 (310)
T d1wdka4         292 GLFLNDQ  298 (310)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhhh
Confidence            9999875

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=1.1e-40  Score=272.57  Aligned_cols=180  Identities=17%  Similarity=0.208  Sum_probs=168.0

Q ss_pred             CCCCccCchhhhhhh-------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceE
Q psy5402           1 MTNNPTDLINEDTDT-------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA   73 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~-------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a   73 (198)
                      .||+|.|++++....       ...+++++.++.++||||||+|||+|+|||++|+++||+||++++            +
T Consensus        60 ~Fs~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~a~GgG~~lal~~D~~ia~~~------------a  127 (249)
T d1sg4a1          60 VFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADN------------P  127 (249)
T ss_dssp             ESCCEECGGGGSSCCHHHHHHHHHHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECC------------T
T ss_pred             eEecccccccccccccccccccchhhHHHHHhhhcCccccchhhcccccccccccccccccceeecc------------c
Confidence            389999999985433       245667889999999999999999999999999999999999999            7


Q ss_pred             EE--ecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHH
Q psy5402          74 TF--HTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQS  151 (198)
Q Consensus        74 ~~--~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a  151 (198)
                      +|  ++||+++|++|++|+++++++++|+.++++++++|+++++++|+++||||+++|++++.+++.++++++++.||.+
T Consensus       128 ~f~~~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a~~A~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a  207 (249)
T d1sg4a1         128 RYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAIPDHA  207 (249)
T ss_dssp             TCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHHHHHHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccHHHHHhhccccccCChHHHHHHHHHHHHHHHcCCHHH
Confidence            65  7899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHH
Q psy5402         152 MIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAIT  192 (198)
Q Consensus       152 ~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~  192 (198)
                      ++.+|+.++......+.+.++.|.+.+...+.+++++++|+
T Consensus       208 ~~~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~~e~~~~~le  248 (249)
T d1sg4a1         208 RQLTKAMMRKATASRLVTQRDADVQNFVSFISKDSIQKSLQ  248 (249)
T ss_dssp             HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHhcC
Confidence            99999999998888888999999999999999999999874

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=100.00  E-value=6.4e-39  Score=259.11  Aligned_cols=163  Identities=21%  Similarity=0.280  Sum_probs=148.9

Q ss_pred             CCCCccCchhhhhhh--------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccce
Q psy5402           1 MTNNPTDLINEDTDT--------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQ   72 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~--------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~   72 (198)
                      .||+|.|++++....        ...+.+++.++.++||||||+|||+|+|||++|+++||+||++++            
T Consensus        57 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~------------  124 (230)
T d2a7ka1          57 SFSAGGDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMAST------------  124 (230)
T ss_dssp             CSBCBSCHHHHHTC-CHHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETT------------
T ss_pred             hhhhhcccccccccccccccccchhhhhhhhhcccchhcceeeecccccccccccchhccchhhcccc------------
Confidence            489999999985432        235677899999999999999999999999999999999999999            


Q ss_pred             EEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHH
Q psy5402          73 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSM  152 (198)
Q Consensus        73 a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~  152 (198)
                      ++|++||+++|++|++|+ .++++++|..++++++++|+.++|+||+++||||+|+|++++.+++.++++++++.||.++
T Consensus       125 a~f~~pe~~~G~~p~~g~-~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~  203 (230)
T d2a7ka1         125 ANFVMPELKHGIGCSVGA-AILGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASYPASAF  203 (230)
T ss_dssp             CEEECCGGGGTCCCHHHH-HHHHHHHCHHHHHHHHHHCCCBCHHHHHHHTCCSEEECHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             chhhhccccccccccccc-cccccccccccccccccccccchHHHHHHhhhcccCCChHHHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999998775 4799999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhchhhhcHHHHHHHHHH
Q psy5402         153 IFAKQLVRVPMLSMLHEANKRECK  176 (198)
Q Consensus       153 ~~~K~~l~~~~~~~~~~~~~~e~~  176 (198)
                      +.+|+.+++.....+++.++.|..
T Consensus       204 ~~~K~~l~~~~~~~l~~~~~~~~a  227 (230)
T d2a7ka1         204 INTKRAVNKPFIHLLEQTRDASKA  227 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHH
Confidence            999999999888878877776643

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.2e-38  Score=257.25  Aligned_cols=180  Identities=26%  Similarity=0.338  Sum_probs=153.8

Q ss_pred             CCCCccCchhhhhhh------------------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCc
Q psy5402           1 MTNNPTDLINEDTDT------------------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAI   62 (198)
Q Consensus         1 ~~s~G~Dl~~~~~~~------------------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~   62 (198)
                      .||+|.|++++....                  ...+.+++..+.++||||||+|||+|+|||++|+++||+|||+++. 
T Consensus        61 ~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a~GgG~~lal~~D~~ia~~~~-  139 (266)
T d1pjha_          61 FFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDK-  139 (266)
T ss_dssp             BSBCCBCHHHHHC-------CCSSHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTT-
T ss_pred             ccccchhHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHhcchhhhhhhhcccccccccchhccchhhhhhcc-
Confidence            389999999885432                  2345568889999999999999999999999999999999997552 


Q ss_pred             ccCCCcccceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHH--H----H
Q psy5402          63 LLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE--R----D  136 (198)
Q Consensus        63 ~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~--~----~  136 (198)
                                ++|++||+++|++|++|+++++++++|..+|++++++|+.++|+||+++||||+|+++++..  .    .
T Consensus       140 ----------~~~~~pe~~lGl~p~~g~~~~l~r~~g~~~a~~llltg~~~~a~eA~~~Glv~~v~~~~~~~~~~~~~~~  209 (266)
T d1pjha_         140 ----------VYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKV  209 (266)
T ss_dssp             ----------CEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTTCHHHHHHHH
T ss_pred             ----------ccccccccccccccccccccccccccccchhhhhhccCCcCCHHHHHHCCCEeEeeCchhhhHHHHHHHH
Confidence                      89999999999999999999999999999999999999999999999999999999854322  2    2


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHH
Q psy5402         137 LWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAI  191 (198)
Q Consensus       137 a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~  191 (198)
                      +.++++.+...++.++..+|+.++......+......|.+...+.|.+++.++.+
T Consensus       210 ~~~l~~~~~~~~~~s~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~f~~~~p~~~f  264 (266)
T d1pjha_         210 LEELREKVKGLYLPSCLGMKKLLKSNHIDAFNKANSVEVNESLKYWVDGEPLKRF  264 (266)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHCCCChhHh
Confidence            4566777888999999999999999888888888888888877777766655544

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=1.4e-35  Score=242.04  Aligned_cols=160  Identities=25%  Similarity=0.436  Sum_probs=144.6

Q ss_pred             CCCccCchhhhhhh-------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEE
Q psy5402           2 TNNPTDLINEDTDT-------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQAT   74 (198)
Q Consensus         2 ~s~G~Dl~~~~~~~-------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~   74 (198)
                      ||+|.|++++....       ...+++++.++.++||||||+|||+|.| |++|+++||+||++++            ++
T Consensus        70 FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~pvIa~v~g~~~G-G~~l~l~~D~ria~~~------------a~  136 (249)
T d1szoa_          70 FCNEIDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVTN-APEIPVMSDIVLAAES------------AT  136 (249)
T ss_dssp             SBCEECGGGSCCSSHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCBCS-STHHHHTSSEEEEETT------------CE
T ss_pred             ccccchhhhhhcccccchhhhhhhhhhhhhhcccCcccceeeecccccc-ccccccccccccccCC------------cE
Confidence            89999999985433       2345778999999999999999998865 6789999999999999            88


Q ss_pred             Ee-cccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHH
Q psy5402          75 FH-TPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMI  153 (198)
Q Consensus        75 ~~-~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~  153 (198)
                      |. +||+++|++|++|+++++++++|..++++++++|+.++++||+++||||+|+|++++.+++.++++++++.||.+++
T Consensus       137 f~~~pe~~~g~~p~~g~~~~l~r~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~  216 (249)
T d1szoa_         137 FQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEKPLLARR  216 (249)
T ss_dssp             EECTTSGGGTCCCTTTHHHHHHHHHCHHHHHHHHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             EEEeeccccccccccccccccccccCccceeeecccCCCCCHHHHHHhCCcCcccCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            85 79999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhchhhhcHHHHHHHH
Q psy5402         154 FAKQLVRVPMLSMLHEANKRE  174 (198)
Q Consensus       154 ~~K~~l~~~~~~~~~~~~~~e  174 (198)
                      .+|+.+++.....++..++.+
T Consensus       217 ~~K~~l~~~~~~~~e~~l~~~  237 (249)
T d1szoa_         217 YARKVLTRQLRRVMEADLSLG  237 (249)
T ss_dssp             HHHHHHSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHH
Confidence            999999988766666555443

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.44  E-value=2.8e-07  Score=69.72  Aligned_cols=99  Identities=22%  Similarity=0.199  Sum_probs=68.9

Q ss_pred             HHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcC--EEEeecCCcccCCCcccceEEEecccccccccCCchhhh-----
Q psy5402          20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCD--IVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSV-----   92 (198)
Q Consensus        20 ~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD--~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~-----   92 (198)
                      ..++..|..++.||...+.|.|.+.|..+.+++|  .|++.++            ++|-+.+...|......-..     
T Consensus        61 l~i~d~i~~~~~~v~t~~~G~aaS~a~~il~ag~k~~R~~~~~------------s~~miH~~~~~~~G~~~~i~~~~~~  128 (179)
T d2cbya1          61 MAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPH------------ARILMHQPLGGVTGSAADIAIQAEQ  128 (179)
T ss_dssp             HHHHHHHHHCSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTT------------CEEECCCC----------CHHHHHH
T ss_pred             HHHHHHHHhhccceeeehhhhhhhHHHHHHHcCCCCceEECCc------------hHhhcCCCchhcCCccHHHHHHHHH
Confidence            4567888899999999999999999999999999  7999999            99888777655432211100     


Q ss_pred             ----------HHHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccccCc
Q psy5402          93 ----------LFPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGVFTT  130 (198)
Q Consensus        93 ----------~l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~  130 (198)
                                .+.+..|  ...-.+.+-.-..++|+||+++||||+|+..
T Consensus       129 l~~~~~~i~~i~a~~tg~~~~~i~~~~~~d~~l~a~EA~~~GliDeIi~~  178 (179)
T d2cbya1         129 FAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITR  178 (179)
T ss_dssp             HHHHHHHHHHHHHHHHCCCHHHHHHHHHTTCEEEHHHHHHHTSCSEECSC
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHhhcCCceecHHHHHHcCCCcEEecC
Confidence                      0111112  2233455566677999999999999999864

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

Probab=98.38  E-value=2e-07  Score=70.71  Aligned_cols=100  Identities=19%  Similarity=0.141  Sum_probs=70.3

Q ss_pred             HHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcC--EEEeecCCcccCCCcccceEEEecccccccccCCchhhh----
Q psy5402          19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCD--IVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSV----   92 (198)
Q Consensus        19 ~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD--~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~----   92 (198)
                      -..++..|..++.|+...+.|.|.+.|..+.++||  .|++.++            ++|-+-+...|......-..    
T Consensus        63 g~~i~d~i~~~~~~v~tv~~G~aaS~a~~I~~ag~~~~R~~~~n------------s~~miH~~~~~~~G~~~~i~~~~~  130 (183)
T d1yg6a1          63 GMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPN------------SRVMIHQPLGGYQGQATDIEIHAR  130 (183)
T ss_dssp             HHHHHHHHHHSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTT------------CEEEECCCEEEEEEEHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCEEEEEEEEeHHHHHHHHHcCCCCceeeCCC------------ceEEecccccccccCHHHHHHHHH
Confidence            34577888899999999999999999999999998  7999999            88888777655432111100    


Q ss_pred             -----------HHHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccccCc
Q psy5402          93 -----------LFPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGVFTT  130 (198)
Q Consensus        93 -----------~l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~  130 (198)
                                 .+.+..|  .....+++-.-..++|+||+++|+||+|++.
T Consensus       131 ~~~~~~~~~~~~~~~~tg~~~e~i~~~~~~d~~lta~EAl~~GliD~Ii~~  181 (183)
T d1yg6a1         131 EILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTH  181 (183)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCHHHHHHHTSSCEEEEHHHHHHHTSSSEECCC
T ss_pred             HHHHHHHHHHHHHHHHHCcCHHHHHHHhccCccccHHHHHHcCCCcEEecc
Confidence                       0111111  2222344433344899999999999999864

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.31  E-value=1.5e-06  Score=66.29  Aligned_cols=99  Identities=15%  Similarity=0.116  Sum_probs=69.1

Q ss_pred             HHHHHHHhcCCCcEEEEEcCccchHHHHHhhh--cCEEEeecCCcccCCCcccceEEEecccccccccCCchhh------
Q psy5402          20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLAL--CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSS------   91 (198)
Q Consensus        20 ~~~~~~i~~~~kp~IA~v~G~a~GgG~~lala--cD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~------   91 (198)
                      -.++..+..++.||...+.|.|.+.|..+.++  ||-|++.++            ++|-+-....|........      
T Consensus        72 lai~d~i~~~~~~v~t~~~G~aaS~as~il~aG~~g~R~~~pn------------s~~miHq~~~~~~G~~~~~~~~~~~  139 (192)
T d1y7oa1          72 LAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPN------------AEYMIHQPMGGTGGGTQQTDMAIAP  139 (192)
T ss_dssp             HHHHHHHHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTT------------CEEECCCCC--------------CH
T ss_pred             HHHHHHHHhcCcceEEEeccccCCccceeeeecCCCccccchH------------HHHHhhcccccccccchhHHHHHHH
Confidence            45778888899999999999999999888776  579999999            9998888876654321110      


Q ss_pred             ---hHH--------HHHh--cHHHHHHHHhcCCCCCHHHHHhcCCcccccCc
Q psy5402          92 ---VLF--------PRIF--GNSVASELLYTGRKLNAQEALQYGFVSGVFTT  130 (198)
Q Consensus        92 ---~~l--------~~~v--G~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~  130 (198)
                         ..+        ....  ...+..+.+-.-.-++|+||+++||||+|+..
T Consensus       140 ~el~~~~~~i~~i~~~~tg~~~~~i~~~~~rd~~lsa~EAleyGliD~Ii~~  191 (192)
T d1y7oa1         140 EHLLKTRNTLEKILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIMAN  191 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCHHHHHHHHHSCCCBCHHHHHHHTSCSEECCC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCceecHHHHHHcCCCcEEecC
Confidence               011        1111  23334566666777999999999999999863

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.28  E-value=1.9e-06  Score=65.61  Aligned_cols=100  Identities=15%  Similarity=0.049  Sum_probs=70.9

Q ss_pred             HHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcC--EEEeecCCcccCCCcccceEEEecccccccccCCchhh----h
Q psy5402          19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCD--IVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSS----V   92 (198)
Q Consensus        19 ~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD--~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~----~   92 (198)
                      --.++..+..++.|+...+.|.|.+.|..+.+++|  .|++.++            ++|-+.....|......-.    .
T Consensus        64 g~ai~d~i~~~~~~v~tv~~G~aaS~a~~i~~aG~kg~R~~~pn------------s~imiH~~s~~~~G~~~di~~~~~  131 (190)
T d2f6ia1          64 GLAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPN------------CRIMIHQPLGNAFGHPQDIEIQTK  131 (190)
T ss_dssp             HHHHHHHHHHSSSCEEEEEEEEECHHHHHHHHTSCTTCEEECTT------------CEEESSCTTCSCC--------CHH
T ss_pred             HHHHHHHHHhhCCceEEEEeccccchhHHHHHhCCCCccccCCC------------cEEEEcccccccCCcHHHHHHHHH
Confidence            34567788889999999999999999999999988  5999999            9999888877654211100    0


Q ss_pred             -----------HHHHHhcH--HHHHHHHhcCCCCCHHHHHhcCCcccccCc
Q psy5402          93 -----------LFPRIFGN--SVASELLYTGRKLNAQEALQYGFVSGVFTT  130 (198)
Q Consensus        93 -----------~l~~~vG~--~~a~~lll~g~~~~a~eA~~~Glv~~v~~~  130 (198)
                                 .+.+..|.  ..-.+.+-.-..++|+||+++||||+|++.
T Consensus       132 ~l~~~~~~~~~i~a~~tg~~~~~i~~~~~~d~~l~a~EAl~~GliD~Ii~~  182 (190)
T d2f6ia1         132 EILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIET  182 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTCEECHHHHHHHTSCSEECCC
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHhccCCeeecHHHHHHcCCCcEEccc
Confidence                       11111221  222344444556999999999999999864

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=98.24  E-value=1.8e-06  Score=66.00  Aligned_cols=98  Identities=12%  Similarity=0.147  Sum_probs=70.5

Q ss_pred             HHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcC--EEEeecCCcccCCCcccceEEEecccccccccCCchhhhH----
Q psy5402          20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCD--IVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVL----   93 (198)
Q Consensus        20 ~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD--~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~----   93 (198)
                      -.++..|..++.||...+.|.|.+.|..+.+++|  .|++.++            ++|-+.....|......-...    
T Consensus        74 ~~i~d~i~~~~~~V~tv~~G~aaS~a~~il~aG~~g~R~~~pn------------s~~miHq~~~~~~G~~~di~~~~~e  141 (193)
T d1tg6a1          74 LAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPN------------SRIMIHQPSGGARGQATDIAIQAEE  141 (193)
T ss_dssp             HHHHHHHHHSCSCEEEEEEEEEETHHHHHHHTSCTTCEEECTT------------CEEEECCCCCCCCSSHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCceEEEEccchHHHHHHHhhcCccCccccCcc------------cHHHhcCCccCCCcCHHHHHHHHHH
Confidence            3577888899999999999999999999999999  5999999            999888887665422111100    


Q ss_pred             -----------HHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccccC
Q psy5402          94 -----------FPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGVFT  129 (198)
Q Consensus        94 -----------l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~  129 (198)
                                 +....|  .....+.+-.-..++|+||+++||||+|+.
T Consensus       142 l~~~~~~i~~i~a~~Tg~~~~~i~~~~~rD~~lta~EAl~yGliD~Ii~  190 (193)
T d1tg6a1         142 IMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLV  190 (193)
T ss_dssp             HHHHHHHHHHHHHHHHCCCHHHHHHHHSSCEEECHHHHHHHTSCSEECS
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHhccCccCCHHHHHHcCCCCEEcc
Confidence                       111111  222234443334599999999999999985

>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA
species: Escherichia coli [TaxId: 562]

Probab=98.06  E-value=7.2e-06  Score=66.97  Aligned_cols=96  Identities=17%  Similarity=0.276  Sum_probs=72.8

Q ss_pred             hhhHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhh
Q psy5402          13 TDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSV   92 (198)
Q Consensus        13 ~~~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~   92 (198)
                      ......+.+.+.++.++++|+|+.|-|-+.|||......+|.+++.++            +.++.      +.|.++.+.
T Consensus       172 ~g~~~~~a~~~~~~~~~~vP~i~vv~g~g~~gga~a~~~~d~v~m~~~------------a~~sv------ispEg~AsI  233 (316)
T d2f9ya1         172 RGQSEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIGVGDKVNMLQY------------STYSV------ISPEGCASI  233 (316)
T ss_dssp             TTHHHHHHHHHHHHHTCSSCEEEEEEEEEEHHHHHTTCCCSEEEECTT------------CEEES------SCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCceEEEEEhhhhchhhhhhhhhhHHHHHhh------------hHHhh------ccchhhhhH
Confidence            334567788999999999999999999999999988888999999999            88873      345555554


Q ss_pred             HHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCc
Q psy5402          93 LFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTT  130 (198)
Q Consensus        93 ~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~  130 (198)
                      .+...--...|.+    ...+++++.+++|+||+|+|.
T Consensus       234 Lwkd~~~a~eaAe----alklta~dL~~lgiIDeII~E  267 (316)
T d2f9ya1         234 LWKSADKAPLAAE----AMGIIRPRLKELKLIDSIIPE  267 (316)
T ss_dssp             HSSCSTTHHHHHH----HHTCSHHHHHTTTSCSCCCCC
T ss_pred             hhccchhhcchHH----HHhhhhHHHHHcCchhhcccC
Confidence            4332222222222    235899999999999999964

>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=97.98  E-value=2.1e-05  Score=62.30  Aligned_cols=106  Identities=18%  Similarity=0.166  Sum_probs=66.6

Q ss_pred             CCccCchhhhhhhHHHHHHHHHHHh--cCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccc
Q psy5402           3 NNPTDLINEDTDTSITLQKYVAAFI--DYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFT   80 (198)
Q Consensus         3 s~G~Dl~~~~~~~~~~~~~~~~~i~--~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~   80 (198)
                      |.|.-+++-.. ....+.+++..+.  +-..|+|+++.|+|+||+.....+||++|+.++            +.+++.  
T Consensus       133 sgG~r~~eg~~-~l~~~~~~~~~~~~ls~~vP~i~vv~Gp~~GG~a~~~~~~d~vi~~~~------------a~i~~a--  197 (253)
T d1on3a1         133 SGGARIQEGID-SLSGYGKMFFANVKLSGVVPQIAIIAGPCAGGASYSPALTDFIIMTKK------------AHMFIT--  197 (253)
T ss_dssp             ECSBCGGGTHH-HHHHHHHHHHHHHHHTTTSCEEEEEEEEEESGGGHHHHHSSEEEEETT------------CEEESS--
T ss_pred             cCCCcccccce-eccccceehHHHHHHhccceEEEEEecCcccceeeccchhhheecccc------------ceEEec--
Confidence            56777765322 1222233322222  235899999999999999999999999999888            665432  


Q ss_pred             cccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHH-------HHhcCCcccccCchhHHHHHHHHHHHHhc
Q psy5402          81 LRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQE-------ALQYGFVSGVFTTEEIERDLWPRIHAWAK  146 (198)
Q Consensus        81 ~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~e-------A~~~Glv~~v~~~~~l~~~a~~~a~~la~  146 (198)
                               +...+..           .+|+.++.+|       +...|.+|.++++++   .+.++++++.+
T Consensus       198 ---------GP~vVe~-----------~~ge~~~~eelGga~~h~~~sG~iD~v~~~e~---~a~~~~r~lls  247 (253)
T d1on3a1         198 ---------GPQVIKS-----------VTGEDVTADELGGAEAHMAISGNIHFVAEDDD---AAELIAKKLLS  247 (253)
T ss_dssp             ---------CHHHHHH-----------HHCCCCCHHHHHSHHHHHHTTCCCSEEESSHH---HHHHHHHHHHH
T ss_pred             ---------Ccchhhh-----------hhCCcCChHhccCHHHhhhccccceEEECCHH---HHHHHHHHHHH
Confidence                     1111211           2466677653       345799999998765   34455555443

>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.88  E-value=8.1e-05  Score=58.92  Aligned_cols=107  Identities=15%  Similarity=0.137  Sum_probs=68.0

Q ss_pred             CCccCchhhhhhhHHHHHHHHHHHh--cCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccc
Q psy5402           3 NNPTDLINEDTDTSITLQKYVAAFI--DYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFT   80 (198)
Q Consensus         3 s~G~Dl~~~~~~~~~~~~~~~~~i~--~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~   80 (198)
                      |.|..+.+-... ...+.+++..+.  .-.+|+|+++.|+|.||+.....+||++|+.+++           +.+++.  
T Consensus       132 sgGarm~e~~~~-~~~~~~~~~~~~~~s~~vP~I~vv~G~~~gG~a~~~~~~~~vim~~~~-----------a~i~~a--  197 (258)
T d1xnya1         132 SGGARIQEGVAS-LGAYGEIFRRNTHASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQT-----------SHMFIT--  197 (258)
T ss_dssp             CCSBCGGGTHHH-HHHHHHHHHHHHHTTTTSCEEEEECSEEEGGGGHHHHHSSEEEEETTT-----------CEEESS--
T ss_pred             CCCcccCccccc-ccchhHHHHHHHHHcCCCCEEEEEcCCcChhHHHHHHhccchhhcccc-----------eEEEec--
Confidence            677777664322 222333333333  3459999999999999999999999998888762           554321  


Q ss_pred             cccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHH-------HhcCCcccccCch-hHHHHHHHHHHH
Q psy5402          81 LRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEA-------LQYGFVSGVFTTE-EIERDLWPRIHA  143 (198)
Q Consensus        81 ~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA-------~~~Glv~~v~~~~-~l~~~a~~~a~~  143 (198)
                                        |++...  ..+|+.++.+|+       ..-|++|.+++++ +..+.+++++.-
T Consensus       198 ------------------GP~vv~--~~~ge~i~~eelgga~~h~~~sG~~d~v~~de~ea~~~~r~~Ls~  248 (258)
T d1xnya1         198 ------------------GPDVIK--TVTGEDVGFEELGGARTHNSTSGVAHHMAGDEKDAVEYVKQLLSY  248 (258)
T ss_dssp             ------------------CHHHHH--HHHCCCCCHHHHHBHHHHHHTSSCCSEEESSHHHHHHHHHHHHHH
T ss_pred             ------------------CHHHHH--HHhcCccChHHhccHHHHHhcCCeeEEEeCCHHHHHHHHHHHHHh
Confidence                              222222  346778888774       4569999999754 444444444443

>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD
species: Escherichia coli [TaxId: 562]

Probab=97.87  E-value=2.3e-05  Score=62.40  Aligned_cols=112  Identities=14%  Similarity=0.172  Sum_probs=69.2

Q ss_pred             CCccCchhhhhhhHH--HHHHHHHHHhcCCCcEEEEEcCccchHHHH-HhhhcCEEEeecCCcccCCCcccceEEEeccc
Q psy5402           3 NNPTDLINEDTDTSI--TLQKYVAAFIDYPKPLIAIVNGPAIGISAT-TLALCDIVFASDTAILLNHPVFVLQATFHTPF   79 (198)
Q Consensus         3 s~G~Dl~~~~~~~~~--~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~-lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe   79 (198)
                      |.|..+.+-......  ........+.....|+|+++.|+|.||+.. +++++|++++.++            +.+++. 
T Consensus       140 sgG~r~~e~~~sl~~~~~~~~~~~~~~~~~vP~I~v~~g~~~GG~aa~~~~~~d~i~~~~~------------s~i~~a-  206 (263)
T d2f9yb1         140 SGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPK------------ALIGFA-  206 (263)
T ss_dssp             ESSBCGGGTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTT------------CBEESS-
T ss_pred             CCCcccccccchhhcchhHHHHHHHHHhCCCceEEEecCCcchHHHhhhhhcCceEeeecc------------eeeecc-
Confidence            456666554322111  222234445567899999999999999875 6777788887777            555432 


Q ss_pred             ccccccCCchhhhHHHHHhcHHHHHHHHhcCCCC-----CHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCC
Q psy5402          80 TLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKL-----NAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLP  148 (198)
Q Consensus        80 ~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~-----~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~  148 (198)
                                +......           .+|+.+     +++-..+.|+||.++++++..+...++.+-|...|
T Consensus       207 ----------GP~vve~-----------~~ge~~~e~~g~a~~~~~~G~iD~vv~~ee~~~~l~~~l~~L~~~p  259 (263)
T d2f9yb1         207 ----------GPRVIEQ-----------TVREKLPPGFQRSEFLIEKGAIDMIVRRPEMRLKLASILAKLMNLP  259 (263)
T ss_dssp             ----------CHHHHHH-----------HHTSCCCTTTTBHHHHGGGTCCSEECCHHHHHHHHHHHHHHHTTCC
T ss_pred             ----------CHHHHhh-----------hcCCcCChhhccHHHHHhCCCCCEEECCHHHHHHHHHHHHHHhhCC
Confidence                      1111222           223333     44555678999999998877666666666665443

>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.80  E-value=5.3e-05  Score=60.05  Aligned_cols=107  Identities=16%  Similarity=0.144  Sum_probs=67.5

Q ss_pred             CCccCchhhhhhhHHHHHHHH--HHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccc
Q psy5402           3 NNPTDLINEDTDTSITLQKYV--AAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFT   80 (198)
Q Consensus         3 s~G~Dl~~~~~~~~~~~~~~~--~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~   80 (198)
                      |.|..+.+-... ...+.+++  ........|+|+++.|+|.||+......||++|+.++.           +.+.+   
T Consensus       133 sgGar~~eg~~~-~~~~~~~~~~~~~~~~~vP~I~~v~G~~~gG~a~~~~~~d~~vm~~~~-----------a~i~~---  197 (258)
T d2a7sa1         133 GAGARIQEGVVS-LGLYSRIFRNNILASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQT-----------SQMFI---  197 (258)
T ss_dssp             CCSBCGGGCTHH-HHHHHHHHHHHHHHTTTSCEEEEECSCCBSGGGHHHHHSSEEEEEBTT-----------BBCBS---
T ss_pred             cCCccccccccc-ccchhhHHHHHHHHcCCCCEEEEEecCcccHHHHHHHhccceEeecCc-----------eEEEc---
Confidence            677777653221 11122222  22334579999999999999999999999999987762           33321   


Q ss_pred             cccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHH-------HhcCCcccccCc-hhHHHHHHHHHHH
Q psy5402          81 LRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEA-------LQYGFVSGVFTT-EEIERDLWPRIHA  143 (198)
Q Consensus        81 ~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA-------~~~Glv~~v~~~-~~l~~~a~~~a~~  143 (198)
                          .             |+...+  ..+|+.++.+|.       .+.|.+|.++++ ++..+.+++++..
T Consensus       198 ----a-------------GP~vV~--~~~ge~~~~eeLGga~~h~~~sG~~D~v~~de~~a~~~~r~~Ls~  249 (258)
T d2a7sa1         198 ----T-------------GPDVIK--TVTGEEVTMEELGGAHTHMAKSGTAHYAASGEQDAFDYVRELLSY  249 (258)
T ss_dssp             ----S-------------CHHHHH--HHHCCCCCHHHHHBHHHHHHTSCCCSEEESSHHHHHHHHHHHHHH
T ss_pred             ----c-------------ChhHHH--HhcCCccChhhccCHhHhhhhccccceEeCCHHHHHHHHHHHHHh
Confidence                1             222223  237788887753       467999999975 4455555555443

>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.78  E-value=5.2e-05  Score=59.85  Aligned_cols=107  Identities=16%  Similarity=0.207  Sum_probs=67.1

Q ss_pred             CCccCchhhhhhhHHHHHHHHH--HHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccc
Q psy5402           3 NNPTDLINEDTDTSITLQKYVA--AFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFT   80 (198)
Q Consensus         3 s~G~Dl~~~~~~~~~~~~~~~~--~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~   80 (198)
                      |.|..+.+-... ...+.+++.  ....-..|+|+++.|+|.||+......||++|+.++.           +.+     
T Consensus       130 sgG~r~~e~~~~-l~~~~~~~~~~~~~s~~iP~I~vv~G~~~gG~a~~~~~~d~~im~~~~-----------a~i-----  192 (251)
T d1vrga1         130 SGGARIQEGVDA-LAGYGEIFLRNTLASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQT-----------ARM-----  192 (251)
T ss_dssp             ECSBCGGGTHHH-HHHHHHHHHHHHHHTTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTT-----------CBC-----
T ss_pred             CCCccccccccc-cccchHHHHHHHHHCCCCCEEEEEccCccccceehhhhCceEEEEccc-----------eeE-----
Confidence            566666553222 122222322  2334579999999999999999999999999998772           222     


Q ss_pred             cccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHH-------HhcCCcccccCchhHHHHHHHHHHHHhc
Q psy5402          81 LRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEA-------LQYGFVSGVFTTEEIERDLWPRIHAWAK  146 (198)
Q Consensus        81 ~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA-------~~~Glv~~v~~~~~l~~~a~~~a~~la~  146 (198)
                        ++.             |+....  ..+|+.++.++.       .+.|++|.++++++   .+.+.++++.+
T Consensus       193 --~~a-------------Gp~vv~--~~~ge~~~~eelGga~~h~~~sG~~D~v~~de~---~a~~~ir~lLs  245 (251)
T d1vrga1         193 --FIT-------------GPNVIK--AVTGEEISQEDLGGAMVHNQKSGNAHFLADNDE---KAMSLVRTLLS  245 (251)
T ss_dssp             --BSS-------------CHHHHH--HHHCCCCCHHHHHBHHHHHHTSCCCSEEESSHH---HHHHHHHHHHT
T ss_pred             --Eec-------------Cchhhh--hhcCCcCChHHccchhhhhhccccceEEECCHH---HHHHHHHHHHH
Confidence              111             222222  247788888774       46799999998652   34444454443

>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=97.68  E-value=8.8e-05  Score=59.61  Aligned_cols=105  Identities=17%  Similarity=0.241  Sum_probs=60.9

Q ss_pred             HHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEeccc--ccccccCCchhhhHHHHHhcHH
Q psy5402          24 AAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPF--TLRGMTPEGCSSVLFPRIFGNS  101 (198)
Q Consensus        24 ~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe--~~~Gi~p~~g~~~~l~~~vG~~  101 (198)
                      ..+....+|+|+.|-|.|.|||...+++||++++.++            +.+.+.-  +--+..+..+........+...
T Consensus       174 a~ls~~~VP~Isvv~G~~~gGgAy~~~~~~~i~~~~~------------a~i~~~Gp~vv~~~~~~~~~~~~~~~ei~~~  241 (287)
T d1pixa2         174 AELNQLGIPVIVGIYGTNPAGGGYHSISPTVIIAHEK------------ANMAVGGAGIMGGMNPKGHVDLEYANEIADM  241 (287)
T ss_dssp             HHHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETT------------CEEESCCCTTCCSCCSSSSCCHHHHHHHHHH
T ss_pred             HHHhhcCCCeEEEecCCccccceeccccceeEEecCC------------eEEEEECHHHhcccchhhhhhhhhHHHHHhh
Confidence            3455678999999999999999888888888888887            7665533  2223333222211112222111


Q ss_pred             HHHHHHhcCCCCCHHHH--HhcCCcccccCchhHHHHHHHHHHHHh
Q psy5402         102 VASELLYTGRKLNAQEA--LQYGFVSGVFTTEEIERDLWPRIHAWA  145 (198)
Q Consensus       102 ~a~~lll~g~~~~a~eA--~~~Glv~~v~~~~~l~~~a~~~a~~la  145 (198)
                      ...  -.+-+.+.+.+.  ..-|++|.++++++   ++.+.++++.
T Consensus       242 ~ge--~~~~eeLGGa~~H~~~sG~~d~v~~~e~---~ai~~~r~~l  282 (287)
T d1pixa2         242 VDR--TGKTEPPGAVDIHYTETGFMREVYASEE---GVLEGIKKYV  282 (287)
T ss_dssp             HHT--TCCCCCSSBHHHHTTTSCCSCEEESSHH---HHHHHHHHHH
T ss_pred             hcc--cccccccccHHHhhhhcccceeecCCHH---HHHHHHHHHH
Confidence            111  113344444443  45699999998653   4444455544

>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.96  E-value=0.0032  Score=49.54  Aligned_cols=113  Identities=19%  Similarity=0.219  Sum_probs=71.4

Q ss_pred             hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhh----hcCEEEeecCCcccCCCcccceEEEecccccccccCCchh
Q psy5402          15 TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLA----LCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCS   90 (198)
Q Consensus        15 ~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lal----acD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~   90 (198)
                      ......+++.++.++.+|.|..|=|.++|||..-..    .+|++++-++            +.++.-..      .++.
T Consensus       125 ~~~~ga~~~~a~a~~~vP~i~viir~~yG~g~~am~~~~~~~d~~~awP~------------a~~~vm~p------e~aa  186 (264)
T d1vrga2         125 IIRHGAKLLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPS------------AEIAVMGP------EGAA  186 (264)
T ss_dssp             HHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTT------------CEEESSCH------HHHH
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEeCCcccHHhhhccCCccCCCeeeeccc------------eeEEecCH------HHhh
Confidence            445667899999999999999999999998874332    4788888777            66654322      2222


Q ss_pred             hhHHHHHhcH-----HHHHHH--HhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHh
Q psy5402          91 SVLFPRIFGN-----SVASEL--LYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWA  145 (198)
Q Consensus        91 ~~~l~~~vG~-----~~a~~l--ll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la  145 (198)
                      ...+.+.+-.     ..-.++  .+.-+.-++-.+.+.|.+|+|+++.+........++.+.
T Consensus       187 ~v~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~aa~~g~iD~VIdP~dTR~~L~~~Le~l~  248 (264)
T d1vrga2         187 NIIFKREIEASSNPEETRRKLIEEYKQQFANPYIAASRGYVDMVIDPRETRKYIMRALEVCE  248 (264)
T ss_dssp             HHHTHHHHHHSSCHHHHHHHHHHHHHHHTSSHHHHHHTTSSSEECCGGGHHHHHHHHHHHHT
T ss_pred             hhhhhhhhhhhhCcHHHHHHHHHHHHHHhcCHHHHHHcCCCCeeECHHHHHHHHHHHHHHHh
Confidence            2222221100     000000  011122367788899999999999988877666665543

>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.87  E-value=0.0017  Score=51.40  Aligned_cols=112  Identities=16%  Similarity=0.187  Sum_probs=70.8

Q ss_pred             hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhh----hcCEEEeecCCcccCCCcccceEEEecccccccccCCchh
Q psy5402          15 TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLA----LCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCS   90 (198)
Q Consensus        15 ~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lal----acD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~   90 (198)
                      ......+++.++..+..|.|..|=|.++|||.....    .+|++++-++            ++++.-.      |.++.
T Consensus       128 ~~~~ga~~~~a~a~~~vP~isvi~~~~~G~~~~am~~~~~~~d~~~AwP~------------A~igvMg------pegaa  189 (271)
T d2a7sa2         128 IIRRGAKLLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPT------------AQIAVMG------ASGAV  189 (271)
T ss_dssp             HHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTT------------CEEESSC------HHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCeEEEEeCCccchhhhhhcccccccceEEEecc------------eeEeecC------HHHHH
Confidence            345667899999999999999999999998865332    3688888888            7765532      11111


Q ss_pred             hhHHHHHhcHH----------H-HHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHH
Q psy5402          91 SVLFPRIFGNS----------V-ASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAW  144 (198)
Q Consensus        91 ~~~l~~~vG~~----------~-a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l  144 (198)
                      ...+.+.+...          + ....-..-+.-++-.+.+.|.+|.|+++.+..+.....++-+
T Consensus       190 ~v~~~~~l~~~~~~~~~~~~~~~~~~~e~~e~~~~p~~aa~~g~iD~VIdP~dTR~~L~~~L~~~  254 (271)
T d2a7sa2         190 GFVYRQQLAEAAANGEDIDKLRLRLQQEYEDTLVNPYVAAERGYVDAVIPPSHTRGYIGTALRLL  254 (271)
T ss_dssp             HHHTTTTTTGGGTSSCCTTSSTTHHHHHHHTTTSBSHHHHHHTSSSEECCGGGHHHHHHHHHHHT
T ss_pred             HHHHHHhhhhhhhcccchHHHHHHHHHHHHHHhcCHHHHHHcCCCCeeECHHHHHHHHHHHHHHH
Confidence            11111111110          0 011112223346677888999999999988877666555443

>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.79  E-value=0.0025  Score=51.74  Aligned_cols=32  Identities=19%  Similarity=0.168  Sum_probs=30.5

Q ss_pred             CCCcEEEEEcCccchHHHHHhhhcCEEEeecC
Q psy5402          29 YPKPLIAIVNGPAIGISATTLALCDIVFASDT   60 (198)
Q Consensus        29 ~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~   60 (198)
                      -..|+|+.|.|.|+|+|..++..||++|+.++
T Consensus       239 ~~iptis~v~G~~vG~gAyl~~L~d~vIm~~~  270 (333)
T d1uyra1         239 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEG  270 (333)
T ss_dssp             HHSCEEEEESSCEETHHHHHHHHTCCEEEETT
T ss_pred             CCCCEEEEEeCCccccceeecccccEEEEeCC
Confidence            46999999999999999999999999999998

>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=96.67  E-value=0.0035  Score=49.31  Aligned_cols=113  Identities=18%  Similarity=0.156  Sum_probs=70.3

Q ss_pred             hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhh----hcCEEEeecCCcccCCCcccceEEEecccccccccCCchh
Q psy5402          15 TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLA----LCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCS   90 (198)
Q Consensus        15 ~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lal----acD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~   90 (198)
                      ......+++.++.++.+|.|+.|=|.++|+|..-..    ..|++++-++            +.+       |..++-++
T Consensus       125 ~i~~ga~~~~a~a~~~vP~itvi~rkayG~g~~am~g~~~~~d~~~aWP~------------A~~-------~vMg~Ega  185 (264)
T d1on3a2         125 IIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPS------------AEI-------AVMGAEGA  185 (264)
T ss_dssp             HHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTT------------CEE-------ESSCHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEEeccccCccccccccccCChhheeeHHh------------hHh-------hhccHHHH
Confidence            345677899999999999999999999998865433    2466666666            554       44443333


Q ss_pred             hhHHH-HHhc---H---HHHHHH-HhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhc
Q psy5402          91 SVLFP-RIFG---N---SVASEL-LYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK  146 (198)
Q Consensus        91 ~~~l~-~~vG---~---~~a~~l-ll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~  146 (198)
                      ...+- +.+.   .   .....+ -+.-+.-++-.+.+.|.+|+|+++.+..+.....++.+..
T Consensus       186 a~v~~~~el~a~~~~~~~~~~~~~e~~~~~~~p~~aA~~g~iD~VIdP~eTR~~L~~aLe~~~~  249 (264)
T d1on3a2         186 ANVIFRKEIKAADDPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVIDPADTRRKIASALEMYAT  249 (264)
T ss_dssp             HHHHTHHHHHHSSCHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEECCGGGHHHHHHHHHHHGGG
T ss_pred             HHHHHhhhhhhhhhhhhhhHHHHHHHHHHhcCHHHHHHcCCCCeeECHHHHHHHHHHHHHHHhc
Confidence            32222 1110   0   000000 0111123567788899999999999888777666666543

>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.64  E-value=0.0057  Score=48.04  Aligned_cols=113  Identities=17%  Similarity=0.189  Sum_probs=72.2

Q ss_pred             hhhHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhh----hcCEEEeecCCcccCCCcccceEEEecccccccccCCc
Q psy5402          13 TDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLA----LCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG   88 (198)
Q Consensus        13 ~~~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lal----acD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~   88 (198)
                      ........+++.++.++..|.|..|=|.++|||.....    ..|++++-++            +.++.       .++-
T Consensus       121 ~g~~~~ga~~~~a~a~~~vPkitvi~~~~~Gga~~~m~~~~~~~d~~~awP~------------a~~gv-------m~pe  181 (263)
T d1xnya2         121 DGIIRRGAKLIFAYAEATVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPT------------AQIAV-------MGAQ  181 (263)
T ss_dssp             TTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTT------------CEEES-------SCHH
T ss_pred             HhHHHHHHHHHHHHHccCCCeEEEEecCccccceeccCCcccCCcEEEEcch------------hhhhc-------cCHH
Confidence            33455677899999999999999999999998875533    3578888777            66654       3332


Q ss_pred             hhhhHHHH-Hhc---------HHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHh
Q psy5402          89 CSSVLFPR-IFG---------NSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWA  145 (198)
Q Consensus        89 g~~~~l~~-~vG---------~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la  145 (198)
                      ++...+.+ ..-         .....+... -...++-.+...|.+|.|+++.+..+......+.+.
T Consensus       182 ~aa~il~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~p~~aA~~g~iD~VIdP~dTR~~L~~~L~~l~  247 (263)
T d1xnya2         182 GAVNILHRRTIADAGDDAEATRARLIQEYE-DALLNPYTAAERGYVDAVIMPSDTRRHIVRGLRQLR  247 (263)
T ss_dssp             HHHHHHTHHHHHSCCTTCSSSHHHHHHHHH-HHHSSSHHHHHHTSSSEECCGGGHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhhccchHHHHHHHHHHHH-HHhcCHHHHHHcccCCcccCHHHHHHHHHHHHHHHh
Confidence            32222211 110         000000000 012356678888999999999998887777776664

>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=96.21  E-value=0.019  Score=45.75  Aligned_cols=117  Identities=13%  Similarity=0.057  Sum_probs=71.9

Q ss_pred             hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhh----cCEEEeecCCcccCCCcccceEEEecccccccccCCch-
Q psy5402          15 TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL----CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC-   89 (198)
Q Consensus        15 ~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lala----cD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g-   89 (198)
                      ......+++.++.++.+|.|+.|=|.++|||...+..    .|++++                 +..|...+|..++-+ 
T Consensus       141 ~~r~ga~~~~a~~~~~VP~isvi~r~~~G~a~~am~g~~~~~~~~~~-----------------~awP~aeigvMg~E~a  203 (299)
T d1pixa3         141 LLGLGQSLIYSIQTSHIPQFEITLRKGTAAAHYVLGGPQGNDTNAFS-----------------IGTAATEIAVMNGETA  203 (299)
T ss_dssp             HHHHHHHHHHHHHTCCCCEEEEECSEEETTHHHHTTCTTCTTTEEEE-----------------EECTTCEEESSCHHHH
T ss_pred             HHHHHHHHHHHHHhhcceeEEEEecccccccccccccCccCccccee-----------------cCCCccccccccchhh
Confidence            4456778899999999999999999999988654332    232221                 223445556554433 


Q ss_pred             hhhHHHHHhcHHH------------HHHHHh-cCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCC
Q psy5402          90 SSVLFPRIFGNSV------------ASELLY-TGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLP  148 (198)
Q Consensus        90 ~~~~l~~~vG~~~------------a~~lll-~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~  148 (198)
                      ....+.+.+....            -++++. .-+.-++-.+.+.|+||+|+++.+........++.+.+.+
T Consensus       204 a~vl~~~el~~~~~~~~~~~e~~e~~~~~~~~~~~~~sp~~aAs~~~iD~IIDP~dTR~~L~~~Le~~~~~~  275 (299)
T d1pixa3         204 ATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQAFYTKSRPKVCAELGLVDEIVDMNKIRGYVEAFTEAAYQNP  275 (299)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTSHHHHHHHTSSSEECCTTTHHHHHHHHHHHHTTSC
T ss_pred             heeehhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhcCHHHHHHhCCcCeeECHHHHHHHHHHHHHHHHhCc
Confidence            3333333222110            011110 0023477788899999999999998888777777655443

>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.09  E-value=0.41  Score=39.15  Aligned_cols=34  Identities=26%  Similarity=0.290  Sum_probs=26.9

Q ss_pred             hHHHHHHHHHHHhcCCCcEEEEE--cCccchHHHHH
Q psy5402          15 TSITLQKYVAAFIDYPKPLIAIV--NGPAIGISATT   48 (198)
Q Consensus        15 ~~~~~~~~~~~i~~~~kp~IA~v--~G~a~GgG~~l   48 (198)
                      ......+++.++.++.+|+|..|  .|.+.||.+..
T Consensus       153 ilr~GA~iv~A~~~~~vP~i~vI~~~g~~~GGa~vv  188 (404)
T d1uyra2         153 VLKYGSFIVDALVDYKQPIIIYIPPTGELRGGSWVV  188 (404)
T ss_dssp             HHHHHHHHHHHHHTCCSCEEEEECTTCEEEHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEeCCcccchhhhhc
Confidence            34456678999999999999999  78888866543