Psyllid ID: psy5433

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
Protein Sequence
MFWSPVGPELSFRVKGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPGTVPQTKERQRAVVKEME
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccEcEcccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mfwspvgpelsfrvkgyvnnkqrqaLDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQkrkesnkrthsapgtvpqtKERQRAVVKEME
Flexible Loop (DISEMBL)
mfwspvgpelSFRVKGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYnaqaehrairskqkrkesnkrthsapgtvpqtkerqravvkeme
Low Complexity Region (SEG)
MFWSPVGPELSFRVKGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPGTVPQTKERQRAVVKEME
Disordered region (IsUnstruct)
***********FRVKGYV***********************I*RIA********I*********************************************
Disordered Region (DISOPRED)
***************************YSESLKQKYAHHPQIRRIARHRQVPRHI**************************************AVV****
Disordered Region (DISEMBL)
MFWSPVGPELSFRVKGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQA****************************************
Disordered Region (DISPRO)
*FWSPVGPELSFRVKGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRK****************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFWSPVGPELSFRVKGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPGTVPQTKERQRAVVKEME
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	100	2.2.26 [Sep-21-2011]
Q5ZLK1	445	DDB1- and CUL4-associated	yes	N/A	0.81	0.182	0.444	1e-15
Q6PAC3	445	DDB1- and CUL4-associated	yes	N/A	0.81	0.182	0.432	4e-15
Q803X4	445	DDB1- and CUL4-associated	yes	N/A	0.85	0.191	0.423	8e-15
Q7ZYQ6	445	DDB1- and CUL4-associated	N/A	N/A	0.85	0.191	0.423	1e-14
Q6NVS5	445	DDB1- and CUL4-associated	yes	N/A	0.85	0.191	0.423	1e-14
Q9NV06	445	DDB1- and CUL4-associated	yes	N/A	0.75	0.168	0.426	5e-13
Q5R4T8	445	DDB1- and CUL4-associated	yes	N/A	0.75	0.168	0.426	6e-13
O74340	436	Protein sof1 OS=Schizosac	yes	N/A	0.71	0.162	0.478	6e-10
P33750	489	Protein SOF1 OS=Saccharom	yes	N/A	0.74	0.151	0.368	5e-06

>sp|Q5ZLK1|DCA13_CHICK DDB1- and CUL4-associated factor 13 OS=Gallus gallus GN=DCAF13 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 58/81 (71%)

Query: 16  GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
           G +  +++ A++Y++ LK+K+ HHPQI+RIARHR +P+ IY    E R +R  ++RKE N
Sbjct: 361 GVLAPREKAAMNYNQKLKEKFQHHPQIKRIARHRHLPKSIYCQIKEQRIMREARRRKELN 420

Query: 76  KRTHSAPGTVPQTKERQRAVV 96
           +R HS PG+VP   E+++ +V
Sbjct: 421 RRKHSKPGSVPVVSEKKKHIV 441

Possible role in ribosomal RNA processing. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.
Gallus gallus (taxid: 9031)

>sp|Q6PAC3|DCA13_MOUSE DDB1- and CUL4-associated factor 13 OS=Mus musculus GN=Dcaf13 PE=2 SV=2

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 58/81 (71%)

Query: 16  GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
           G + ++++ A DY++ LK+K+ +HP ++RIARHR +P+ IY+   E R ++  ++RKE N
Sbjct: 361 GVLTSREKAANDYNQKLKEKFQYHPHVKRIARHRHLPKSIYSQIQEQRVMKEARRRKEMN 420

Query: 76  KRTHSAPGTVPQTKERQRAVV 96
           +R HS PG+VP   ER++ VV
Sbjct: 421 RRKHSKPGSVPIVSERKKHVV 441

Possible role in ribosomal RNA processing. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Mus musculus (taxid: 10090)

>sp|Q803X4|DCA13_DANRE DDB1- and CUL4-associated factor 13 OS=Danio rerio GN=dcaf13 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 59/85 (69%)

Query: 16  GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
           G ++ +++ A +Y++ L QK+ HHPQ+RRIARHR +PR +   + E + ++  ++RKE N
Sbjct: 361 GVLSTREKTAANYNKKLIQKFQHHPQVRRIARHRHLPRDVLKQKRELKEMKEARRRKEQN 420

Query: 76  KRTHSAPGTVPQTKERQRAVVKEME 100
            R HS PG+VP   E+++ VVK +E
Sbjct: 421 VRKHSKPGSVPLLTEKEKHVVKVVE 445

Possible role in ribosomal RNA processing. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Danio rerio (taxid: 7955)

>sp|Q7ZYQ6|DCA13_XENLA DDB1- and CUL4-associated factor 13 OS=Xenopus laevis GN=dcaf13 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 61/85 (71%)

Query: 16  GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
           G ++ ++R A +Y++ LK+K+ HHPQI+RIARHR +PR IY+   E + +R  +++K+ N
Sbjct: 361 GVLSPRERAAQNYNQKLKEKFQHHPQIKRIARHRHLPRSIYSQIKEQQIMREARRKKDVN 420

Query: 76  KRTHSAPGTVPQTKERQRAVVKEME 100
           +R HS PG+VP   E+++ V+  +E
Sbjct: 421 RRKHSKPGSVPIPSEKKKHVLAVVE 445

Possible role in ribosomal RNA processing. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Xenopus laevis (taxid: 8355)

>sp|Q6NVS5|DCA13_XENTR DDB1- and CUL4-associated factor 13 OS=Xenopus tropicalis GN=dcaf13 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 61/85 (71%)

Query: 16  GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
           G ++ ++R A +Y++ LK+K+ HHPQI+RIARHR +PR IY+   E + +R  +++K+ N
Sbjct: 361 GLLSPRERAAQNYNQKLKEKFHHHPQIKRIARHRHLPRSIYSQIKEQQIMREARRKKDVN 420

Query: 76  KRTHSAPGTVPQTKERQRAVVKEME 100
           +R HS PG+VP   E+++ V+  +E
Sbjct: 421 RRKHSKPGSVPIPSEKKKHVLAVVE 445

Possible role in ribosomal RNA processing. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Xenopus tropicalis (taxid: 8364)

>sp|Q9NV06|DCA13_HUMAN DDB1- and CUL4-associated factor 13 OS=Homo sapiens GN=DCAF13 PE=1 SV=2

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 52/75 (69%)

Query: 16  GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
           G + ++++ A DY++ LK+K+ H+P I+RIARHR +P+ IY+   E R ++  ++RKE N
Sbjct: 361 GVLTSREKAAKDYNQKLKEKFQHYPHIKRIARHRHLPKSIYSQIQEQRIMKEARRRKEVN 420

Query: 76  KRTHSAPGTVPQTKE 90
           +  HS PG+VP   E
Sbjct: 421 RIKHSKPGSVPLVSE 435

Possible role in ribosomal RNA processing (By similarity). May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Homo sapiens (taxid: 9606)

>sp|Q5R4T8|DCA13_PONAB DDB1- and CUL4-associated factor 13 OS=Pongo abelii GN=DCAF13 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 52/75 (69%)

Query: 16  GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
           G + ++++ A DY++ LK+K+ H+P I+RIARHR +P+ IY+   E R ++  ++RKE N
Sbjct: 361 GVLTSREKAAKDYNQKLKEKFQHYPHIKRIARHRHLPKSIYSQIQEQRIMKEARRRKEVN 420

Query: 76  KRTHSAPGTVPQTKE 90
           +  HS PG+VP   E
Sbjct: 421 RIKHSKPGSVPIVSE 435

Possible role in ribosomal RNA processing. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Pongo abelii (taxid: 9601)

>sp|O74340|DCA13_SCHPO Protein sof1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sof1 PE=3 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 45/71 (63%)

Query: 26  LDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPGTV 85
           L Y +SL+++Y H P+IRRIARHR +P ++  A    R   +  KR+E N R HS  G V
Sbjct: 362 LKYLDSLRERYKHIPEIRRIARHRHLPTNVKKAAEIKREEINSLKRREENIRRHSKKGAV 421

Query: 86  PQTKERQRAVV 96
           P  KER+R VV
Sbjct: 422 PYEKERERHVV 432

Required for ribosomal RNA processing.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P33750|DCA13_YEAST Protein SOF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SOF1 PE=1 SV=1

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 2/76 (2%)

Query: 21  KQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHS 80
           +++  L+Y E LK+++ H P+I+RI+RHR VP+ I  AQ       S  KR+E+N+R   
Sbjct: 389 REKNKLEYDEKLKERFRHMPEIKRISRHRHVPQVIKKAQEIKNIELSSIKRREANER--R 446

Query: 81  APGTVPQTKERQRAVV 96
               +P   ER++ +V
Sbjct: 447 TRKDMPYISERKKQIV 462

Required for ribosomal RNA processing.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
225711030	446	WD repeat and SOF domain-containing prot	0.85	0.190	0.541	2e-21
357614240	447	hypothetical protein KGM_21307 [Danaus p	0.85	0.190	0.6	3e-21
66506992	445	PREDICTED: DDB1- and CUL4-associated fac	0.83	0.186	0.590	4e-21
380021475	445	PREDICTED: LOW QUALITY PROTEIN: DDB1- an	0.83	0.186	0.590	4e-21
91076846	445	PREDICTED: similar to GA20229-PA [Tribol	0.83	0.186	0.602	1e-20
307205152	439	WD repeat and SOF domain-containing prot	0.82	0.186	0.609	2e-20
405971185	444	WD repeat and SOF domain-containing prot	0.85	0.191	0.541	4e-20
345490198	445	PREDICTED: LOW QUALITY PROTEIN: DDB1- an	0.83	0.186	0.578	8e-20
332022306	444	WD repeat and SOF domain-containing prot	0.81	0.182	0.592	9e-20
340712999	444	PREDICTED: LOW QUALITY PROTEIN: DDB1- an	0.83	0.186	0.554	1e-19

>gi|225711030|gb|ACO11361.1| WD repeat and SOF domain-containing protein 1 [Caligus rogercresseyi]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/85 (54%), Positives = 68/85 (80%)

Query: 16  GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
           G + ++QR AL+Y+ +LK+KY ++P+IRRIA+H+ VP+H+ NA AEH+ I++ + RKE+N
Sbjct: 362 GVLKDRQRAALEYNATLKEKYGNYPKIRRIAKHKNVPKHVLNAMAEHKIIKASKSRKEAN 421

Query: 76  KRTHSAPGTVPQTKERQRAVVKEME 100
           +R HSAPG VP   ER++ VVKEME
Sbjct: 422 RRMHSAPGKVPYVPEREKHVVKEME 446

Source: Caligus rogercresseyi

Species: Caligus rogercresseyi

Genus: Caligus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357614240|gb|EHJ68981.1| hypothetical protein KGM_21307 [Danaus plexippus]

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 51/85 (60%), Positives = 65/85 (76%)

Query: 16  GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
           G +  ++R AL+YSE+LK+K++ HPQI+RIARHR VP+HI NAQ E R I+ K KRKE N
Sbjct: 363 GVLKPRERTALNYSEALKEKFSGHPQIKRIARHRHVPKHILNAQKELRTIKEKSKRKEGN 422

Query: 76  KRTHSAPGTVPQTKERQRAVVKEME 100
           KR+HS PG VP   ER++ VVKE E
Sbjct: 423 KRSHSKPGAVPFVPERKKHVVKEDE 447

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66506992|ref|XP_394497.2| PREDICTED: DDB1- and CUL4-associated factor 13-like [Apis mellifera]

 Score =  105 bits (262), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/83 (59%), Positives = 66/83 (79%)

Query: 16  GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
           G +  +++ AL+YSE+LK+K+A HPQ++RIARHRQ+P+HIYNA+ E R IR K KRKESN
Sbjct: 361 GVLKPREKAALNYSEALKEKFAAHPQVKRIARHRQIPKHIYNAKNELRTIREKIKRKESN 420

Query: 76  KRTHSAPGTVPQTKERQRAVVKE 98
           +R HS PGTVP   ER+R V ++
Sbjct: 421 RRAHSKPGTVPFISERKRHVAQQ 443

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380021475|ref|XP_003694590.1| PREDICTED: LOW QUALITY PROTEIN: DDB1- and CUL4-associated factor 13-like [Apis florea]

 Score =  105 bits (261), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/83 (59%), Positives = 66/83 (79%)

Query: 16  GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
           G +  +++ AL+YSE+LK+K+A HPQ++RIARHRQ+P+HIYNA+ E R IR K KRKESN
Sbjct: 361 GVLKPREKAALNYSEALKEKFAAHPQVKRIARHRQIPKHIYNAKNELRTIREKTKRKESN 420

Query: 76  KRTHSAPGTVPQTKERQRAVVKE 98
           +R HS PGTVP   ER+R V ++
Sbjct: 421 RRAHSKPGTVPFIPERKRHVAQQ 443

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91076846|ref|XP_974788.1| PREDICTED: similar to GA20229-PA [Tribolium castaneum] gi|270001818|gb|EEZ98265.1| hypothetical protein TcasGA2_TC000707 [Tribolium castaneum]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 65/83 (78%)

Query: 16  GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
           G +  ++R AL+YSE+LK+KYA HP++RRIARHR VP+HIYNAQ E R I+ K KRKE+N
Sbjct: 361 GPLKPRERAALNYSEALKEKYATHPKVRRIARHRHVPKHIYNAQNELRTIKEKGKRKEAN 420

Query: 76  KRTHSAPGTVPQTKERQRAVVKE 98
           +R HS PG VP   ER++ V+KE
Sbjct: 421 RRAHSKPGEVPYEPERKKHVLKE 443

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307205152|gb|EFN83595.1| WD repeat and SOF domain-containing protein 1 [Harpegnathos saltator]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/82 (60%), Positives = 63/82 (76%)

Query: 16  GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
           G V ++QR +L Y+E+LK+KY  HPQIRRIARHRQVP+H+YNAQAE R IR K KRKE+N
Sbjct: 356 GIVRSRQRTSLLYNEALKEKYMAHPQIRRIARHRQVPKHLYNAQAELRKIREKNKRKEAN 415

Query: 76  KRTHSAPGTVPQTKERQRAVVK 97
           +R HS  G VP   ER+  +V+
Sbjct: 416 RRYHSKKGAVPFVSEREAHIVR 437

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405971185|gb|EKC36037.1| WD repeat and SOF domain-containing protein 1 [Crassostrea gigas]

 Score =  101 bits (252), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/85 (54%), Positives = 65/85 (76%)

Query: 16  GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
           G ++ +++ +++Y+E LK+K+ HHPQIRRIARHR VPR IY+   E R ++  +KRKESN
Sbjct: 360 GMLSTREKASMNYNEKLKEKFIHHPQIRRIARHRHVPRQIYSLSKEMRIMKESRKRKESN 419

Query: 76  KRTHSAPGTVPQTKERQRAVVKEME 100
           KR HS PG VP   ER++A+VKE+E
Sbjct: 420 KRRHSKPGAVPYVPERKKAIVKEVE 444

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|345490198|ref|XP_003426327.1| PREDICTED: LOW QUALITY PROTEIN: DDB1- and CUL4-associated factor 13-like [Nasonia vitripennis]

 Score =  100 bits (250), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 64/83 (77%)

Query: 16  GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
           G +  +++ AL+Y+E+LK+K+A HPQ+RRIARHRQVP+HI NA +E R IR K KRKE+N
Sbjct: 361 GVLKPREKAALNYAEALKEKFASHPQVRRIARHRQVPKHILNAASEIRRIREKSKRKETN 420

Query: 76  KRTHSAPGTVPQTKERQRAVVKE 98
           +R HS  G VP   ERQ+ VV+E
Sbjct: 421 RRIHSKKGDVPFVSERQKHVVRE 443

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022306|gb|EGI62618.1| WD repeat and SOF domain-containing protein 1 [Acromyrmex echinatior]

 Score =  100 bits (250), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 48/81 (59%), Positives = 62/81 (76%)

Query: 16  GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
           G +  ++R AL  +++LK+KYA HP++RRIARHRQVP+HIYNA+AE R IR K KRKE+N
Sbjct: 360 GILRARERNALLVNDALKEKYAAHPEVRRIARHRQVPKHIYNARAELRTIREKSKRKEAN 419

Query: 76  KRTHSAPGTVPQTKERQRAVV 96
           KR HS  G +P   ERQ+ VV
Sbjct: 420 KRYHSKKGAIPFVSERQKNVV 440

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712999|ref|XP_003395039.1| PREDICTED: LOW QUALITY PROTEIN: DDB1- and CUL4-associated factor 13-like [Bombus terrestris]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 65/83 (78%)

Query: 16  GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
           G +  ++R AL+YSE+LK+K++ HPQ++RI+RHRQVP+H+YNA+AE R IR K KRKE+N
Sbjct: 360 GVLRPRERTALNYSEALKEKFSAHPQVKRISRHRQVPKHVYNAKAELRTIRQKSKRKEAN 419

Query: 76  KRTHSAPGTVPQTKERQRAVVKE 98
           +R HS  G VP   ER + VV++
Sbjct: 420 RRAHSKRGAVPFVSERSKNVVQQ 442

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
FB|FBgn0036500	446	CG7275 [Drosophila melanogaste	0.83	0.186	0.488	2.6e-17
RGD|1308458	445	Dcaf13 "DDB1 and CUL4 associat	0.81	0.182	0.444	9.3e-17
UNIPROTKB|Q5ZLK1	445	DCAF13 "DDB1- and CUL4-associa	0.81	0.182	0.444	2e-16
MGI|MGI:2684929	445	Dcaf13 "DDB1 and CUL4 associat	0.81	0.182	0.432	2.5e-16
UNIPROTKB|Q7ZYQ6	445	dcaf13 "DDB1- and CUL4-associa	0.85	0.191	0.423	3.3e-16
UNIPROTKB|Q6NVS5	445	dcaf13 "DDB1- and CUL4-associa	0.85	0.191	0.423	4.2e-16
ZFIN|ZDB-GENE-040426-703	445	dcaf13 "ddb1 and cul4 associat	0.85	0.191	0.423	4.2e-16
UNIPROTKB|Q9NV06	445	DCAF13 "DDB1- and CUL4-associa	0.81	0.182	0.419	3.2e-15
UNIPROTKB|Q5R4T8	445	DCAF13 "DDB1- and CUL4-associa	0.81	0.182	0.419	4.1e-15
UNIPROTKB|F1P9T8	445	DCAF13 "Uncharacterized protei	0.82	0.184	0.435	5.2e-15

FB|FBgn0036500 CG7275 [Drosophila melanogaster (taxid:7227)]

 Score = 218 (81.8 bits), Expect = 2.6e-17, P = 2.6e-17
 Identities = 41/84 (48%), Positives = 59/84 (70%)

Query:    16 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
             G +  ++R   +Y E+LKQKYA HPQI+RIARHRQVPRH+ NAQ + R ++ K++ KE+N
Sbjct:   361 GVIRPRERVNFNYQEALKQKYAAHPQIKRIARHRQVPRHVLNAQKKMRTVKEKEQVKEAN 420

Query:    76 KRTHSAPGT-VPQTKERQRAVVKE 98
              R H+     VP   E+++ V+KE
Sbjct:   421 VRKHTKKSKKVPYVSEKKKHVLKE 444

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

RGD|1308458 Dcaf13 "DDB1 and CUL4 associated factor 13" [Rattus norvegicus (taxid:10116)]

 Score = 213 (80.0 bits), Expect = 9.3e-17, P = 9.3e-17
 Identities = 36/81 (44%), Positives = 58/81 (71%)

Query:    16 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
             G + +++R A DY++ LK+K+ +HP ++RIARHR +P+ IY+   E R ++  ++RKE N
Sbjct:   361 GVLTSRERAANDYNQKLKEKFQYHPHVKRIARHRHLPKSIYSQIQEQRVMKEARRRKEMN 420

Query:    76 KRTHSAPGTVPQTKERQRAVV 96
             +R HS PG+VP   ER++ VV
Sbjct:   421 RRKHSKPGSVPVVSERKKHVV 441

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IEA;ISO

UNIPROTKB|Q5ZLK1 DCAF13 "DDB1- and CUL4-associated factor 13" [Gallus gallus (taxid:9031)]

 Score = 210 (79.0 bits), Expect = 2.0e-16, P = 2.0e-16
 Identities = 36/81 (44%), Positives = 58/81 (71%)

Query:    16 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
             G +  +++ A++Y++ LK+K+ HHPQI+RIARHR +P+ IY    E R +R  ++RKE N
Sbjct:   361 GVLAPREKAAMNYNQKLKEKFQHHPQIKRIARHRHLPKSIYCQIKEQRIMREARRRKELN 420

Query:    76 KRTHSAPGTVPQTKERQRAVV 96
             +R HS PG+VP   E+++ +V
Sbjct:   421 RRKHSKPGSVPVVSEKKKHIV 441

GO:0006364 "rRNA processing" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

MGI|MGI:2684929 Dcaf13 "DDB1 and CUL4 associated factor 13" [Mus musculus (taxid:10090)]

 Score = 209 (78.6 bits), Expect = 2.5e-16, P = 2.5e-16
 Identities = 35/81 (43%), Positives = 58/81 (71%)

Query:    16 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
             G + ++++ A DY++ LK+K+ +HP ++RIARHR +P+ IY+   E R ++  ++RKE N
Sbjct:   361 GVLTSREKAANDYNQKLKEKFQYHPHVKRIARHRHLPKSIYSQIQEQRVMKEARRRKEMN 420

Query:    76 KRTHSAPGTVPQTKERQRAVV 96
             +R HS PG+VP   ER++ VV
Sbjct:   421 RRKHSKPGSVPIVSERKKHVV 441

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISO

UNIPROTKB|Q7ZYQ6 dcaf13 "DDB1- and CUL4-associated factor 13" [Xenopus laevis (taxid:8355)]

 Score = 208 (78.3 bits), Expect = 3.3e-16, P = 3.3e-16
 Identities = 36/85 (42%), Positives = 61/85 (71%)

Query:    16 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
             G ++ ++R A +Y++ LK+K+ HHPQI+RIARHR +PR IY+   E + +R  +++K+ N
Sbjct:   361 GVLSPRERAAQNYNQKLKEKFQHHPQIKRIARHRHLPRSIYSQIKEQQIMREARRKKDVN 420

Query:    76 KRTHSAPGTVPQTKERQRAVVKEME 100
             +R HS PG+VP   E+++ V+  +E
Sbjct:   421 RRKHSKPGSVPIPSEKKKHVLAVVE 445

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

UNIPROTKB|Q6NVS5 dcaf13 "DDB1- and CUL4-associated factor 13" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 207 (77.9 bits), Expect = 4.2e-16, P = 4.2e-16
 Identities = 36/85 (42%), Positives = 61/85 (71%)

Query:    16 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
             G ++ ++R A +Y++ LK+K+ HHPQI+RIARHR +PR IY+   E + +R  +++K+ N
Sbjct:   361 GLLSPRERAAQNYNQKLKEKFHHHPQIKRIARHRHLPRSIYSQIKEQQIMREARRKKDVN 420

Query:    76 KRTHSAPGTVPQTKERQRAVVKEME 100
             +R HS PG+VP   E+++ V+  +E
Sbjct:   421 RRKHSKPGSVPIPSEKKKHVLAVVE 445

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

ZFIN|ZDB-GENE-040426-703 dcaf13 "ddb1 and cul4 associated factor 13" [Danio rerio (taxid:7955)]

 Score = 207 (77.9 bits), Expect = 4.2e-16, P = 4.2e-16
 Identities = 36/85 (42%), Positives = 59/85 (69%)

Query:    16 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
             G ++ +++ A +Y++ L QK+ HHPQ+RRIARHR +PR +   + E + ++  ++RKE N
Sbjct:   361 GVLSTREKTAANYNKKLIQKFQHHPQVRRIARHRHLPRDVLKQKRELKEMKEARRRKEQN 420

Query:    76 KRTHSAPGTVPQTKERQRAVVKEME 100
              R HS PG+VP   E+++ VVK +E
Sbjct:   421 VRKHSKPGSVPLLTEKEKHVVKVVE 445

GO:0003674 "molecular_function" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|Q9NV06 DCAF13 "DDB1- and CUL4-associated factor 13" [Homo sapiens (taxid:9606)]

 Score = 199 (75.1 bits), Expect = 3.2e-15, P = 3.2e-15
 Identities = 34/81 (41%), Positives = 57/81 (70%)

Query:    16 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
             G + ++++ A DY++ LK+K+ H+P I+RIARHR +P+ IY+   E R ++  ++RKE N
Sbjct:   361 GVLTSREKAAKDYNQKLKEKFQHYPHIKRIARHRHLPKSIYSQIQEQRIMKEARRRKEVN 420

Query:    76 KRTHSAPGTVPQTKERQRAVV 96
             +  HS PG+VP   E+++ VV
Sbjct:   421 RIKHSKPGSVPLVSEKKKHVV 441

GO:0006364 "rRNA processing" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;IC

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IDA

UNIPROTKB|Q5R4T8 DCAF13 "DDB1- and CUL4-associated factor 13" [Pongo abelii (taxid:9601)]

 Score = 198 (74.8 bits), Expect = 4.1e-15, P = 4.1e-15
 Identities = 34/81 (41%), Positives = 57/81 (70%)

Query:    16 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
             G + ++++ A DY++ LK+K+ H+P I+RIARHR +P+ IY+   E R ++  ++RKE N
Sbjct:   361 GVLTSREKAAKDYNQKLKEKFQHYPHIKRIARHRHLPKSIYSQIQEQRIMKEARRRKEVN 420

Query:    76 KRTHSAPGTVPQTKERQRAVV 96
             +  HS PG+VP   E+++ VV
Sbjct:   421 RIKHSKPGSVPIVSEKKKHVV 441

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

UNIPROTKB|F1P9T8 DCAF13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 197 (74.4 bits), Expect = 5.2e-15, P = 5.2e-15
 Identities = 37/85 (43%), Positives = 58/85 (68%)

Query:    16 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
             G + ++++ A DY++ LK+K+ HHP I+RIARHR +P+ IY+   E R ++  ++RKE N
Sbjct:   361 GVLTSREKAAKDYNQKLKEKFQHHPHIKRIARHRHLPKSIYSQIQEQRIMKEARRRKEVN 420

Query:    76 KRTHSAPGTV---PQTKERQRAVVK 97
             +  HS PG+V   P+ K+   AVVK
Sbjct:   421 RLKHSKPGSVSIVPEKKKHIVAVVK 445

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	100
pfam04158	88	pfam04158, Sof1, Sof1-like domain	5e-22

>gnl|CDD|217935 pfam04158, Sof1, Sof1-like domain

 Score = 81.6 bits (202), Expect = 5e-22
 Identities = 42/81 (51%), Positives = 60/81 (74%)

Query: 16 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESN 75
          G ++ ++RQAL+Y+E+LK+KY H P+I+RIARHR VP+ I  AQ   R ++  +KRKE N
Sbjct: 8  GVLSPRERQALEYNEALKEKYKHMPEIKRIARHRHVPKAIKKAQKIKREMKEAKKRKEEN 67

Query: 76 KRTHSAPGTVPQTKERQRAVV 96
          +R HS PG+VP   ER++ VV
Sbjct: 68 RRKHSKPGSVPPKPERKKHVV 88

Sof1 is essential for cell growth and is a component of the nucleolar rRNA processing machinery. Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	100
PF04158	88	Sof1: Sof1-like domain ; InterPro: IPR007287 Sof1	100.0
KOG0268|consensus	433		99.98
PF01726	65	LexA_DNA_bind: LexA DNA binding domain; InterPro:	82.04

>PF04158 Sof1: Sof1-like domain ; InterPro: IPR007287 Sof1 is essential for cell growth and is a component of the nucleolar rRNA processing machinery []

Probab=100.00  E-value=2.3e-43  Score=239.99  Aligned_cols=88  Identities=48%  Similarity=0.782  Sum_probs=86.6

Q ss_pred             CcchhhcCCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCc
Q psy5433           9 ELSFRVKGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPGTVPQT   88 (100)
Q Consensus         9 ~~ase~lG~ls~REr~al~Y~~~LkeKykh~PEIkRIarHRhvPK~I~ka~~~k~~~~~a~kRKE~Nrr~HSk~g~v~~~   88 (100)
                      +.||++||+||+||+++++|+++|+|||+|||||+||++||||||+||+|++++++|.+|++|||+|+++||++|++|++
T Consensus         1 A~ASeklG~ls~REr~~l~Y~~~Lkekyk~~pEIrRI~rhRhvPK~I~~a~~~k~~~~~a~~RKe~nrr~hsk~~~~~~~   80 (88)
T PF04158_consen    1 ANASEKLGVLSPRERAALEYREALKEKYKHMPEIRRIARHRHVPKAIKKAQKIKREMKEAEKRKEENRRKHSKPGAVPPK   80 (88)
T ss_pred             CCcchhcCCCCHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCc
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhh
Q psy5433          89 KERQRAVV   96 (100)
Q Consensus        89 ~erkK~vv   96 (100)
                      +||+++||
T Consensus        81 ~erkk~vv   88 (88)
T PF04158_consen   81 PERKKHVV   88 (88)
T ss_pred             cccccCCC
Confidence            99999997

>KOG0268|consensus

Probab=99.98  E-value=9.5e-33  Score=227.00  Aligned_cols=90  Identities=39%  Similarity=0.737  Sum_probs=87.7

Q ss_pred             CcchhhcCCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCc
Q psy5433           9 ELSFRVKGYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVPRHIYNAQAEHRAIRSKQKRKESNKRTHSAPGTVPQT   88 (100)
Q Consensus         9 ~~ase~lG~ls~REr~al~Y~~~LkeKykh~PEIkRIarHRhvPK~I~ka~~~k~~~~~a~kRKE~Nrr~HSk~g~v~~~   88 (100)
                      ..||++||++|+||+++++|+++|||||+|+|||+|||||||||++|++|+++++++.+|++|||.|+++||++  +|+.
T Consensus       344 a~Aseklgv~t~rEk~~~~Y~e~Lke~y~~~peIkRIarHR~lPk~i~~a~ki~r~~~~s~~rrea~~~~~~~~--~~y~  421 (433)
T KOG0268|consen  344 AKASEKLGVITPREKNKLEYNEALKERYKHLPEIKRIARHRHLPKPIKKAQKIKRTVNDSERRREANRRRHSKP--VPYA  421 (433)
T ss_pred             cchhhhcCCCChhHHHHHHHHHHHHHHHhhcHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCcc
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999998  8999


Q ss_pred             hhhhhhhhhccC
Q psy5433          89 KERQRAVVKEME  100 (100)
Q Consensus        89 ~erkK~vv~~~e  100 (100)
                      +||+++||++++
T Consensus       422 ~~~kk~vv~~~~  433 (433)
T KOG0268|consen  422 PERKKHIVGEVE  433 (433)
T ss_pred             hhhcceeeeecC
Confidence            999999999865

>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria

Probab=82.04  E-value=2.7  Score=26.61  Aligned_cols=37  Identities=16%  Similarity=0.328  Sum_probs=28.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcCC
Q psy5433          16 GYVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQVP   52 (100)
Q Consensus        16 G~ls~REr~al~Y~~~LkeKykh~PEIkRIarHRhvP   52 (100)
                      -.||+||++-++|-..-.+.+..-|-|+.|++|=.+-
T Consensus         2 ~~LT~rQ~~vL~~I~~~~~~~G~~Pt~rEIa~~~g~~   38 (65)
T PF01726_consen    2 KELTERQKEVLEFIREYIEENGYPPTVREIAEALGLK   38 (65)
T ss_dssp             ----HHHHHHHHHHHHHHHHHSS---HHHHHHHHTSS
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCC
Confidence            3689999999999999999999999999999999884

The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	100
d1m6ia3	131	Apoptosis-inducing factor (AIF) {Human (Homo sapie	85.56
d1jhfa1	71	LexA repressor, N-terminal DNA-binding domain {Esc	81.73

>d1m6ia3 d.87.1.1 (A:478-608) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.56  E-value=0.043  Score=37.44  Aligned_cols=20  Identities=40%  Similarity=1.074  Sum_probs=18.8

Q ss_pred             CCccCCCCCcchhhcCCCCH
Q psy5433           1 MFWSPVGPELSFRVKGYVNN   20 (100)
Q Consensus         1 ~~~~~~~~~~ase~lG~ls~   20 (100)
                      ||||-.||+.-.|-+|.+..
T Consensus         4 mFWSDLgPevGYEAIGivDS   23 (131)
T d1m6ia3           4 MFWSDLGPDVGYEAIGLVDS   23 (131)
T ss_dssp             EEEEESSTTCEEEEEECCCT
T ss_pred             cchhhcCcccCeeeeeeecC
Confidence            89999999999999999876

>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: LexA repressor, N-terminal DNA-binding domain
domain: LexA repressor, N-terminal DNA-binding domain
species: Escherichia coli [TaxId: 562]

Probab=81.73  E-value=1  Score=26.32  Aligned_cols=35  Identities=14%  Similarity=0.179  Sum_probs=33.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcC
Q psy5433          17 YVNNKQRQALDYSESLKQKYAHHPQIRRIARHRQV   51 (100)
Q Consensus        17 ~ls~REr~al~Y~~~LkeKykh~PEIkRIarHRhv   51 (100)
                      .||+||+.-++|-..-.+++..-|-++-|+++-.+
T Consensus         2 ~LT~rQ~~vL~~I~~~~~~~G~~Ps~rei~~~~g~   36 (71)
T d1jhfa1           2 ALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGF   36 (71)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCC
Confidence            58999999999999999999999999999999987