Psyllid ID: psy5445

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-----
Protein Sequence
MHQHRQSLRGLYDTEQKSLVFAMRGSSSELLLDPQQQLRKRKLLELAQNKNKKKVKRTCKQKIWFYTTSFFAMTAVSTGSSLLFLVPLYVDPAISTLTSDFNPNPVTCVTILNRTETGIFNCTWSSCREGCTSDMYKCFQIFVKYVDYNVTFSEEPLYVDNAILLVNIKGCGYPPEVQCANFASSYGMQDKSYPCYYSRKNTTIVMDKYDEEEQMYIIIHYFIIPFIICVVCSIVLCVMHCECQCNDNIATSLPPSKQRPDDEQNYVKDVGGTDLGPQNYKNEELLPTILCAISYRLTYANITSTYNNLFCTLCN
Secondary Structure (PSIPRED)
cccccccccccccccccEEEEEEEccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccccEEEEEEEEEEEccccccccccccccccccccccEEEEEcccccccccccccccccccEEEEccccccccccccHHHHHHHHcccccccEEEEccccccEEEEEccHHHHHHHHHHHHHHcHHHHHHHHHHHHEEEEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccEEEEEEccccccEEEcccc
Secondary Structure Prediction (SSPRO)
cccccHHHccccccccccEEEEEEccccHHHccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcEEcHHHHHHHHccccccEEEEEEEEEEEcccccccccccccccccHccccEEEEEEccccccccccccccccccEEEEEcccccccccccHHHHHHHHccccccccEEEEcccccEEEEEccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccHHccccccccccccHHccccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccc
Coil and Loop (DISEMBL)
MHQHRQSLRGLYDTEQKSLVFAMRgsssellldPQQQLRKRKLLELAQNKNKKKVKRTCKQKIWFYTTSFFAMTAVStgssllflvplyvdpaistltsdfnpnpvtCVTILNRtetgifnctwsscregctsdmyKCFQIFVKYVDynvtfseeplyvdnAILLVNikgcgyppevqcanfassygmqdksypcyysrknttivmdkydeEEQMYIIIHYFIIPFIICVVCSIVLCVMhcecqcndniatslppskqrpddeqnyvkdvggtdlgpqnykneellPTILCAISYRLTYANITSTYNNLFCTLCN
Flexible Loop (DISEMBL)
mhqhrqslrglyDTEQKSLVFAMRGSSSELLLDPQQQLRKRKLLElaqnknkkkvkrtckQKIWFYTTSFFAMTAVSTGSSLLFLVPLYVDPAIstltsdfnpnpVTCVTILNRTETGIFNCTWSSCREGCTSDMYKCFQIFVKYVDYNVTFSEEPLYVDNAILLVNIKGCGYPPEVQCANFASSYGMQDKSYPCYYSRKNTTIVMDKYDEEEQMYIIIHYFIIPFIICVVCSIVLCVMHCECQCNDNIAtslppskqrpddEQNYVKDVGGTDLGPQNYKNEELLPTILCAISYRLTYANITSTYNNLFCTLCN
Low Complexity Region (SEG)
MHQHRQSLRGLYDTEQKSLVFAMRGSSSEllldpqqqlrkrkllelaqNknkkkvkrtckqkIWFYTTSFFAMTAVSTGSSLLFLVPLYVDPAISTLTSDFNPNPVTCVTILNRTETGIFNCTWSSCREGCTSDMYKCFQIFVKYVDYNVTFSEEPLYVDNAILLVNIKGCGYPPEVQCANFASSYGMQDKSYPCYYSRKNTTIVMDKYDEEEQMyiiihyfiipfiicvvcsivlcvMHCECQCNDNIATSLPPSKQRPDDEQNYVKDVGGTDLGPQNYKNEELLPTILCAISYRLTYANITSTYNNLFCTLCN
Disordered region (IsUnstruct)
******************************************************VKRTCKQKIWFYTTSFFAMTAVSTGSSLLFLVPLYVDPAISTLTSDFNPNPVTCVTILNRTETGIFNCTWSSCREGCTSDMYKCFQIFVKYVDYNVTFSEEPLYVDNAILLVNIKGCGYPPEVQCANFASSYGMQDKSYPCYYSRKNTTIVMDKYDEEEQMYIIIHYFIIPFIICVVCSIVLCVMHCECQCNDNIA****************************NYKNEELLPTILCAISYRLTYANITSTYNNLFCTLC*
Disordered Region (DISOPRED)
***********YDTEQKSLV******************************************IWFYTTSFFAMTAVSTGSSLLFLVPLYVDPAISTLTSDFNPNPVTCVTILNRTETGIFNCTWSSCREGCTSDMYKCFQIFVKYVDYNVTFSEEPLYVDNAILLVNIKGCGYPPEVQCANFASSYGMQDKSYPCYYSRKNTTIVMDKYDEEEQMYIIIHYFIIPFIICVVCSIVLCVMHCECQCND************************************ELLPTILCAISYRLTYANITSTYNNLFCTLCN
Disordered Region (DISEMBL)
*********GLYDTEQKSLVFAMRGSSSELLLDPQQQLRKRKLLELAQN********TCKQKIWFYTTSFFAMTAVSTGSSLLFLVPLYVDPAISTLTSDFNPNPVTCVTILNRTETGIFNCTWSSCREGCTSDMYKCFQIFVKYVDYNVTFSEEPLYVDNAILLVNIKGCGYPPEVQCANFASSYGMQDKSYPCYYSRKNTTIVMDKYDEEEQMYIIIHYFIIPFIICVVCSIVLCVMHCECQCNDNIATSLPPSKQRPDDEQNYVKDVGGTDLGPQNYKNEELLPTILCAISYRLTYANITSTYNNLFCTLCN
Disordered Region (DISPRO)
********RGLYDTEQKSLVFAMRGSSSELLLDPQQQLRKRKLLELAQNKNKKKVKRTCKQKIWFYTTSFFAMTAVSTGSSLLFLVPLYVDPAISTLTSDFNPNPVTCVTILNRTETGIFNCTWSSCREGCTSDMYKCFQIFVKYVDYNVTFSEEPLYVDNAILLVNIKGCGYPPEVQCANFASSYGMQDKSYPCYYSRKNTTIVMDKYDEEEQMYIIIHYFIIPFIICVVCSIVLCVMHCECQCNDNIATSL***************DVGGTDLGPQNYKNEELLPTILCAISYRLTYANITSTYNNLFCTLCN
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHQHRQSLRGLYDTEQKSLVFAMRGSSSELLLDPQQQLRKRKLLELAQNKNKKKVKRTCKQKIWFYTTSFFAMTAVSTGSSLLFLVPLYVDPAISTLTSDFNPNPVTCVTILNRTETGIFNCTWSSCREGCTSDMYKCFQIFVKYVDYNVTFSEEPLYVDNAILLVNIKGCGYPPEVQCANFASSYGMQDKSYPCYYSRKNTTIVMDKYDEEEQMYIIIHYFIIPFIICVVCSIVLCVMHCECQCNDNIATSLPPSKQRPDDEQNYVKDVGGTDLGPQNYKNEELLPTILCAISYRLTYANITSTYNNLFCTLCN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	315	2.2.26 [Sep-21-2011]
P48613	452	Protein tipE OS=Drosophil	no	N/A	0.276	0.192	0.466	8e-17

>sp|P48613|TIPE_DROME Protein tipE OS=Drosophila melanogaster GN=tipE PE=2 SV=1

 Score = 88.2 bits (217), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 54/90 (60%)

Query: 56  KRTCKQKIWFYTTSFFAMTAVSTGSSLLFLVPLYVDPAISTLTSDFNPNPVTCVTILNRT 115
           KRT K+K+ FYTT+FF +    +  + LFLVP  ++PA +T+   F   P  C T     
Sbjct: 7   KRTGKEKLLFYTTAFFILLGTFSLFAFLFLVPFVIEPAFTTIFMQFEEVPALCETYDTEI 66

Query: 116 ETGIFNCTWSSCREGCTSDMYKCFQIFVKY 145
             G  NC+WSSCREGCT D+Y C QI V Y
Sbjct: 67  YYGAKNCSWSSCREGCTKDIYTCTQIRVNY 96

Enhances para sodium channel function. Required during pupal development to rescue adult paralysis and also protects adult flys against heat-induced lethality.
Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
242020096	299	conserved hypothetical protein [Pediculu	0.714	0.752	0.599	1e-77
445066980	279	sodium channel auxiliary subunit TEH1-li	0.707	0.799	0.581	4e-75
445066978	280	sodium channel auxiliary subunit TEH1-li	0.707	0.796	0.581	4e-75
91076124	264	PREDICTED: similar to AGAP003797-PA [Tri	0.695	0.829	0.575	1e-71
31202811	281	AGAP003797-PA [Anopheles gambiae str. PE	0.707	0.793	0.527	3e-66
312377636	280	hypothetical protein AND_10996 [Anophele	0.707	0.796	0.527	1e-65
345487834	306	PREDICTED: protein tipE-like isoform 1 [	0.774	0.797	0.451	1e-62
345487836	303	PREDICTED: protein tipE-like isoform 2 [	0.774	0.805	0.451	2e-62
170040397	285	tipE [Culex quinquefasciatus] gi|1678639	0.657	0.726	0.527	1e-61
170040395	261	conserved hypothetical protein [Culex qu	0.657	0.793	0.527	1e-61

>gi|242020096|ref|XP_002430492.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212515649|gb|EEB17754.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  295 bits (756), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 142/237 (59%), Positives = 176/237 (74%), Gaps = 12/237 (5%)

Query: 22  AMRGSSSELLLDPQQQLRKRKLLELAQNKNKKKVKRTCKQKIWFYTTSFFAMTAVSTGSS 81
            MR SSSELL+D QQ+LR+RKLLEL   K KK  KRTC+Q+IWFYTTS  A+TAVS GSS
Sbjct: 48  VMRSSSSELLIDQQQELRRRKLLELVAPKKKKAPKRTCRQRIWFYTTSIVALTAVSAGSS 107

Query: 82  LLFLVPLYVDPAISTLTSDFNPNPVTCVTILNRTETGIFNCTWSSCREGCTSDMYKCFQI 141
           LLFLVPLYVDPAISTL +DF   PVTC T      +GIFNCTWSSCREGCTSDMYKC  I
Sbjct: 108 LLFLVPLYVDPAISTLVADFVETPVTCTTTRREDHSGIFNCTWSSCREGCTSDMYKCTHI 167

Query: 142 FVKYVDY------------NVTFSEEPLYVDNAILLVNIKGCGYPPEVQCANFASSYGMQ 189
           +V Y +Y            +V+ S+     D A+LLVNIKGCGYPPEV C  F ++YG++
Sbjct: 168 YVSYSNYTTLMTSNNNRFDDVSPSQTMNGSDEAVLLVNIKGCGYPPEVNCGQFTATYGIE 227

Query: 190 DKSYPCYYSRKNTTIVMDKYDEEEQMYIIIHYFIIPFIICVVCSIVLCVMHCECQCN 246
              +PC+YSR+N+T+V+  YD +EQ+ III+YF +PFI+ +V S+VLC+MH +CQC+
Sbjct: 228 GTEFPCHYSRENSTVVLTHYDRDEQVEIIINYFAVPFIVTIVSSVVLCIMHYDCQCS 284

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|445066980|gb|AGE14343.1| sodium channel auxiliary subunit TEH1-like transcript variant TEH1B [Periplaneta americana]

 Score =  287 bits (735), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 146/251 (58%), Positives = 171/251 (68%), Gaps = 28/251 (11%)

Query: 23  MRGSSSELLLDPQQQLRKRKLLELAQNKNKKKVKRTCKQKIWFYTTSFFAMTAVSTGSSL 82
           MR SSSELLLD QQ+LRKRKLLELAQ K KK  KRTC+++IWFYTTSF AMTAV  GSSL
Sbjct: 1   MRSSSSELLLDQQQELRKRKLLELAQPK-KKPPKRTCRERIWFYTTSFLAMTAVGGGSSL 59

Query: 83  LFLVPLYVDPAISTLTSDFNPNPVTCVTILNRTETGIFNCTWSSCREGCTSDMYKCFQIF 142
           LFLVPLYVDPAISTL +DF P PV CVT       GI NCTWSSCREGCTSDMY C  I+
Sbjct: 60  LFLVPLYVDPAISTLAADFAPEPVKCVTTRREELCGILNCTWSSCREGCTSDMYSCTHIY 119

Query: 143 VKYV---------DYNVTFSEEPL------------------YVDNAILLVNIKGCGYPP 175
           V Y          D N T +                      + ++A+LLVNIKGCGYPP
Sbjct: 120 VMYTTAPYYTDDGDGNWTSTSTSPSTSTTTTTTTTTPSPGENFTEDAVLLVNIKGCGYPP 179

Query: 176 EVQCANFASSYGMQDKSYPCYYSRKNTTIVMDKYDEEEQMYIIIHYFIIPFIICVVCSIV 235
           EV C NF + YG  +  +PCYYSR+N T+V+  YD EE + IIIHYF +PFI+ +  S+V
Sbjct: 180 EVDCDNFTTMYGKVNAEFPCYYSRENRTVVLIHYDREEHVAIIIHYFAVPFIVTLATSVV 239

Query: 236 LCVMHCECQCN 246
           LCVM+C+C+C 
Sbjct: 240 LCVMYCDCRCG 250

Source: Periplaneta americana

Species: Periplaneta americana

Genus: Periplaneta

Family: Blattidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|445066978|gb|AGE14342.1| sodium channel auxiliary subunit TEH1-like transcript variant TEH1A [Periplaneta americana]

 Score =  287 bits (735), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 146/251 (58%), Positives = 171/251 (68%), Gaps = 28/251 (11%)

Query: 23  MRGSSSELLLDPQQQLRKRKLLELAQNKNKKKVKRTCKQKIWFYTTSFFAMTAVSTGSSL 82
           MR SSSELLLD QQ+LRKRKLLELAQ K KK  KRTC+++IWFYTTSF AMTAV  GSSL
Sbjct: 1   MRSSSSELLLDQQQELRKRKLLELAQPK-KKPPKRTCRERIWFYTTSFLAMTAVGGGSSL 59

Query: 83  LFLVPLYVDPAISTLTSDFNPNPVTCVTILNRTETGIFNCTWSSCREGCTSDMYKCFQIF 142
           LFLVPLYVDPAISTL +DF P PV CVT       GI NCTWSSCREGCTSDMY C  I+
Sbjct: 60  LFLVPLYVDPAISTLAADFAPEPVKCVTTRREELCGILNCTWSSCREGCTSDMYSCTHIY 119

Query: 143 VKYV---------DYNVTFSEEPL------------------YVDNAILLVNIKGCGYPP 175
           V Y          D N T +                      + ++A+LLVNIKGCGYPP
Sbjct: 120 VMYTTAPYYTDDGDGNWTSTSTSPSTSTTTTTTTTTPSPGENFTEDAVLLVNIKGCGYPP 179

Query: 176 EVQCANFASSYGMQDKSYPCYYSRKNTTIVMDKYDEEEQMYIIIHYFIIPFIICVVCSIV 235
           EV C NF + YG  +  +PCYYSR+N T+V+  YD EE + IIIHYF +PFI+ +  S+V
Sbjct: 180 EVDCDNFTTMYGKVNAEFPCYYSRENRTVVLIHYDREEHVAIIIHYFAVPFIVTLATSVV 239

Query: 236 LCVMHCECQCN 246
           LCVM+C+C+C 
Sbjct: 240 LCVMYCDCRCG 250

Source: Periplaneta americana

Species: Periplaneta americana

Genus: Periplaneta

Family: Blattidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91076124|ref|XP_969821.1| PREDICTED: similar to AGAP003797-PA [Tribolium castaneum] gi|270014713|gb|EFA11161.1| hypothetical protein TcasGA2_TC004765 [Tribolium castaneum]

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 130/226 (57%), Positives = 164/226 (72%), Gaps = 7/226 (3%)

Query: 23  MRGSSSELLLDPQQQLRKRKLLELAQNK--NKKKVKRTCKQKIWFYTTSFFAMTAVSTGS 80
           MR SSSELLLD Q++LRKRK+ ELA  K  NK+   R+C+++  FY+TS  A+ A+S GS
Sbjct: 1   MRSSSSELLLDQQEELRKRKIKELAAAKKANKQVGGRSCREQALFYSTSLLAVMAMSAGS 60

Query: 81  SLLFLVPLYVDPAISTLTSDFNPNPVTCVTILNRTETGIFNCTWSSCREGCTSDMYKCFQ 140
           SLLFLVPLYVDPAISTL S+F   PVTCVT      TG+ NC+WSSCREGCTSD Y C  
Sbjct: 61  SLLFLVPLYVDPAISTLASNFVTEPVTCVTTRREDLTGLANCSWSSCREGCTSDAYHCTH 120

Query: 141 IFVKYVDYNVTFSEEPLYVDNAILLVNIKGCGYPPEVQCANFASSYGMQDKSYPCYYSRK 200
           I+V Y D     SE     D+A+LLVNIKGCGYPP V C NF  +YG +   +PCY+SR+
Sbjct: 121 IYVSYND-----SEAHNQTDDAVLLVNIKGCGYPPTVLCVNFTEAYGNEGTVFPCYHSRE 175

Query: 201 NTTIVMDKYDEEEQMYIIIHYFIIPFIICVVCSIVLCVMHCECQCN 246
           N T+V+  Y+ +EQ+ IIIHYF +PF+I +  S+ LCVMHC+C+C+
Sbjct: 176 NRTVVLTHYERDEQVAIIIHYFAVPFVITLATSVALCVMHCDCRCH 221

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|31202811|ref|XP_310354.1| AGAP003797-PA [Anopheles gambiae str. PEST] gi|21293871|gb|EAA06016.1| AGAP003797-PA [Anopheles gambiae str. PEST]

 Score =  258 bits (659), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 126/239 (52%), Positives = 164/239 (68%), Gaps = 16/239 (6%)

Query: 23  MRGSSSELLLDPQ-QQLRKRKLLELA---QNKNKKKVKRTCKQKIWFYTTSFFAMTAVST 78
           MR  SSELLL+ Q ++LRK+KLLELA   + KN    KR+ ++   FYTTS  A  +V+ 
Sbjct: 1   MRSDSSELLLEQQAEELRKKKLLELAAAKKAKNGPPPKRSLRENASFYTTSGLAFLSVTA 60

Query: 79  GSSLLFLVPLYVDPAISTLTSDFNPNPVTCVTILNRTETGIFNCTWSSCREGCTSDMYKC 138
           G+SLLFLVPLYVDPAISTL  DF   P  CVT      TG+FNC+WSSCREGCTSD++KC
Sbjct: 61  GASLLFLVPLYVDPAISTLVGDFVERPTMCVTTRREDMTGLFNCSWSSCREGCTSDVFKC 120

Query: 139 FQIFVKYVD---YNVTFSEEPLYVDN---------AILLVNIKGCGYPPEVQCANFASSY 186
             I+V ++D   +   F+  P  + N         AILLVNIKGCGYPP V+C NF   Y
Sbjct: 121 THIYVTFIDDLNFTFPFNATPAELFNLTDIERSEEAILLVNIKGCGYPPAVKCKNFTDLY 180

Query: 187 GMQDKSYPCYYSRKNTTIVMDKYDEEEQMYIIIHYFIIPFIICVVCSIVLCVMHCECQC 245
           G +   +PCYYS++N T+VM  Y+ E+Q+  IIH+F++PFI+ VV S+ LC+MHC+C+C
Sbjct: 181 GFEGAVFPCYYSKQNKTVVMTAYNREDQVNTIIHFFVVPFIVTVVSSVFLCIMHCDCRC 239

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312377636|gb|EFR24422.1| hypothetical protein AND_10996 [Anopheles darlingi]

 Score =  256 bits (653), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 126/239 (52%), Positives = 164/239 (68%), Gaps = 16/239 (6%)

Query: 23  MRGSSSELLLDPQ-QQLRKRKLLELA---QNKNKKKVKRTCKQKIWFYTTSFFAMTAVST 78
           MR  SSELLL+ Q ++LRK+KLLELA   + KN    KR+ ++   FYTTS  A  +V+ 
Sbjct: 1   MRSDSSELLLEQQAEELRKKKLLELAAAKKAKNGPPPKRSLRENASFYTTSGLAFLSVTA 60

Query: 79  GSSLLFLVPLYVDPAISTLTSDFNPNPVTCVTILNRTETGIFNCTWSSCREGCTSDMYKC 138
           G+SLLFLVPLYVDPAISTL  DF   P  CVT      TG+FNC+WSSCREGCTSD++KC
Sbjct: 61  GASLLFLVPLYVDPAISTLVGDFVEQPTMCVTTRREDMTGLFNCSWSSCREGCTSDVFKC 120

Query: 139 FQIFVKYVD---YNVTFSEEPLYVDN---------AILLVNIKGCGYPPEVQCANFASSY 186
             I+V ++D   +   F+  P  + N         AILLVNIKGCGYPP V+C NF   Y
Sbjct: 121 THIYVTFIDDLNFTFPFNATPGELFNLTDIERSEEAILLVNIKGCGYPPTVKCKNFTDMY 180

Query: 187 GMQDKSYPCYYSRKNTTIVMDKYDEEEQMYIIIHYFIIPFIICVVCSIVLCVMHCECQC 245
           G +   +PCYYS++N T+VM  Y+ E+Q+  IIH+F++PFI+ VV S+ LC+MHC+C+C
Sbjct: 181 GFEGAVFPCYYSKQNKTVVMTAYNREDQVNTIIHFFVVPFIVTVVSSVFLCIMHCDCRC 239

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345487834|ref|XP_003425767.1| PREDICTED: protein tipE-like isoform 1 [Nasonia vitripennis]

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 127/281 (45%), Positives = 165/281 (58%), Gaps = 37/281 (13%)

Query: 23  MRGSSSELLLDP-----------QQQLRKRKLLELAQNKNKKKV-KRTCKQKIWFYTTSF 70
           M   SSELLLD            +Q+ R+RKLLEL     K++  +RTCKQ++ FY TS 
Sbjct: 1   MHAGSSELLLDAKCRQLLRDELAEQEQRRRKLLELGYGAAKRRPPRRTCKQRLTFYATSS 60

Query: 71  FAMTAVSTGSSLLFLVPLYVDPAISTLTSDFNPNPVTCVTILNRTETGIFNCTWSSCREG 130
            A+ A+S G +LLFLVPLYVDPAISTL++DF P PV C T       G+FNC+WSSCREG
Sbjct: 61  LALVAISGGCALLFLVPLYVDPAISTLSADFFPEPVICTTSKREDLWGLFNCSWSSCREG 120

Query: 131 CTSDMYKCFQIFVKYVDYN------------------VTFSEEPLYVDNAILLVNIKGCG 172
           CTS++Y C  I+V Y  ++                   T  EEP  V+ A+LLVNIKGCG
Sbjct: 121 CTSEVYHCTHIYVTYTPWSNSSLNATEDELDAVPSIGTTREEEPEIVE-AVLLVNIKGCG 179

Query: 173 YPPEVQCANFASSYGMQDKSYPCYYSRKNTTIVMDKYDEEEQMYIIIHYFIIPFIICVVC 232
           YPP V C NF    G +   +PCYYSR N +IVM  YD + ++ II+HYF  P ++ +  
Sbjct: 180 YPPVVDCENFTRELGYEGSRFPCYYSRVNGSIVMADYDRDAELTIIMHYFAAPLVMTLAT 239

Query: 233 SIVLCVMHCECQCNDNIATSLPPSKQRPDDEQNYVKDVGGT 273
           + VLCVMHC+C+C        PP +  P   +   K   G+
Sbjct: 240 TAVLCVMHCDCRCQP------PPRRYPPGSRRIPSKSTSGS 274

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345487836|ref|XP_003425768.1| PREDICTED: protein tipE-like isoform 2 [Nasonia vitripennis]

 Score =  245 bits (625), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 127/281 (45%), Positives = 165/281 (58%), Gaps = 37/281 (13%)

Query: 23  MRGSSSELLLDP-----------QQQLRKRKLLELAQNKNKKKV-KRTCKQKIWFYTTSF 70
           M   SSELLLD            +Q+ R+RKLLEL     K++  +RTCKQ++ FY TS 
Sbjct: 1   MHAGSSELLLDAKCRQLLRDELAEQEQRRRKLLELGYGAAKRRPPRRTCKQRLTFYATSS 60

Query: 71  FAMTAVSTGSSLLFLVPLYVDPAISTLTSDFNPNPVTCVTILNRTETGIFNCTWSSCREG 130
            A+ A+S G +LLFLVPLYVDPAISTL++DF P PV C T       G+FNC+WSSCREG
Sbjct: 61  LALVAISGGCALLFLVPLYVDPAISTLSADFFPEPVICTTSKREDLWGLFNCSWSSCREG 120

Query: 131 CTSDMYKCFQIFVKYVDYN------------------VTFSEEPLYVDNAILLVNIKGCG 172
           CTS++Y C  I+V Y  ++                   T  EEP  V+ A+LLVNIKGCG
Sbjct: 121 CTSEVYHCTHIYVTYTPWSNSSLNATEDELDAVPSIGTTREEEPEIVE-AVLLVNIKGCG 179

Query: 173 YPPEVQCANFASSYGMQDKSYPCYYSRKNTTIVMDKYDEEEQMYIIIHYFIIPFIICVVC 232
           YPP V C NF    G +   +PCYYSR N +IVM  YD + ++ II+HYF  P ++ +  
Sbjct: 180 YPPVVDCENFTRELGYEGSRFPCYYSRVNGSIVMADYDRDAELTIIMHYFAAPLVMTLAT 239

Query: 233 SIVLCVMHCECQCNDNIATSLPPSKQRPDDEQNYVKDVGGT 273
           + VLCVMHC+C+C        PP +  P   +   K   G+
Sbjct: 240 TAVLCVMHCDCRCQP------PPRRYPPGSRRIPSKSTSGS 274

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170040397|ref|XP_001847987.1| tipE [Culex quinquefasciatus] gi|167863945|gb|EDS27328.1| tipE [Culex quinquefasciatus]

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 117/222 (52%), Positives = 150/222 (67%), Gaps = 15/222 (6%)

Query: 39  RKRKLLELAQNKNKKKV---KRTCKQKIWFYTTSFFAMTAVSTGSSLLFLVPLYVDPAIS 95
           RK+KLLELA  K  K     KRT ++   FYTTS  A  +V+ G+S+LFLVPLYVDPAIS
Sbjct: 18  RKKKLLELAAAKKAKSGPAPKRTLRENASFYTTSSLAFLSVTAGASILFLVPLYVDPAIS 77

Query: 96  TLTSDFNPNPVTCVTILNRTETGIFNCTWSSCREGCTSDMYKCFQIFVKYVD-------Y 148
           TL  DF   P  CVT      TG+FNC+WSSCREGCTSD++KC  I+V ++D       +
Sbjct: 78  TLVGDFVERPTMCVTTRREDMTGLFNCSWSSCREGCTSDVFKCTHIYVTFIDDLNFTFPF 137

Query: 149 NVTFSE-----EPLYVDNAILLVNIKGCGYPPEVQCANFASSYGMQDKSYPCYYSRKNTT 203
           N T SE     +    D AILLVNIKGCGYPP V C NF   YG +   +PCYYS+ N T
Sbjct: 138 NATPSELFNLTDIERSDEAILLVNIKGCGYPPTVTCKNFTDMYGFEGAVFPCYYSKLNKT 197

Query: 204 IVMDKYDEEEQMYIIIHYFIIPFIICVVCSIVLCVMHCECQC 245
           +VM  Y+ E+Q+  I+H+F+IPFI+ V+ S++LC+MHC+C+C
Sbjct: 198 VVMTAYNREDQVQTIVHFFVIPFIVTVISSVLLCIMHCDCRC 239

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170040395|ref|XP_001847986.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167863944|gb|EDS27327.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 117/222 (52%), Positives = 150/222 (67%), Gaps = 15/222 (6%)

Query: 39  RKRKLLELAQNKNKKKV---KRTCKQKIWFYTTSFFAMTAVSTGSSLLFLVPLYVDPAIS 95
           RK+KLLELA  K  K     KRT ++   FYTTS  A  +V+ G+S+LFLVPLYVDPAIS
Sbjct: 18  RKKKLLELAAAKKAKSGPAPKRTLRENASFYTTSSLAFLSVTAGASILFLVPLYVDPAIS 77

Query: 96  TLTSDFNPNPVTCVTILNRTETGIFNCTWSSCREGCTSDMYKCFQIFVKYVD-------Y 148
           TL  DF   P  CVT      TG+FNC+WSSCREGCTSD++KC  I+V ++D       +
Sbjct: 78  TLVGDFVERPTMCVTTRREDMTGLFNCSWSSCREGCTSDVFKCTHIYVTFIDDLNFTFPF 137

Query: 149 NVTFSE-----EPLYVDNAILLVNIKGCGYPPEVQCANFASSYGMQDKSYPCYYSRKNTT 203
           N T SE     +    D AILLVNIKGCGYPP V C NF   YG +   +PCYYS+ N T
Sbjct: 138 NATPSELFNLTDIERSDEAILLVNIKGCGYPPTVTCKNFTDMYGFEGAVFPCYYSKLNKT 197

Query: 204 IVMDKYDEEEQMYIIIHYFIIPFIICVVCSIVLCVMHCECQC 245
           +VM  Y+ E+Q+  I+H+F+IPFI+ V+ S++LC+MHC+C+C
Sbjct: 198 VVMTAYNREDQVQTIVHFFVIPFIVTVISSVLLCIMHCDCRC 239

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
FB|FBgn0037766	279	Teh1 "tipE homolog 1" [Drosoph	0.622	0.702	0.444	9.1e-45
FB|FBgn0035505	313	Teh2 "tipE homolog 2" [Drosoph	0.473	0.476	0.423	8.8e-31
FB|FBgn0003710	452	tipE "temperature-induced para	0.276	0.192	0.449	5.5e-25
FB|FBgn0040697	448	Teh3 "tipE homolog 3" [Drosoph	0.212	0.149	0.356	2.8e-05
FB|FBgn0035504	524	Teh4 "tipE homolog 4" [Drosoph	0.206	0.124	0.338	0.00031

FB|FBgn0037766 Teh1 "tipE homolog 1" [Drosophila melanogaster (taxid:7227)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 92/207 (44%), Positives = 117/207 (56%)

Query:    65 FYTTSFFAMTAVSTGSSLLFLVPLYVDPAISTLTSDFNPNPVTCVTILNRTETGIFNCTW 124
             FY TS  A  +V+ G+SLLFLVPLYVDPAISTL+ DF   P  C T       GIFNC+W
Sbjct:    45 FYGTSTLAFFSVTAGASLLFLVPLYVDPAISTLSHDFIEKPTLCTTTRREDLVGIFNCSW 104

Query:   125 SSCREGCTSDMYKCFQIFVKYVDYNVTFSEEPLYVDN----------AILLVNIKGCGYP 174
             SSCREGCTSD+Y+C  I+V +++ N+T  E      N          A LLVNIKGCGYP
Sbjct:   105 SSCREGCTSDLYRCVHIYVTFIEQNITIPENMTDYSNFTSDMEQSGEATLLVNIKGCGYP 164

Query:   175 PEVQCANFASSYGMQDKSYPCYYSRKNTTIVMDKYDEEEQMXXXXXXXXXXXXXXXXXXX 234
             P V C NF   YG++   +PC+YSRKN T+V+  Y+ ++Q+                   
Sbjct:   165 PSVTCKNFNGYYGIEGAIFPCFYSRKNKTVVLTSYNHDDQVAMIIHFFAVPFVITVISSI 224

Query:   235 XXXXMHCECQCN-DNIATSLPPSKQRP 260
                 MHC+C+C  D       P  +RP
Sbjct:   225 ALCIMHCDCRCKKDRSHRRNRPQCRRP 251

GO:0016021 "integral to membrane" evidence=ISM

GO:0002028 "regulation of sodium ion transport" evidence=IDA

GO:0017080 "sodium channel regulator activity" evidence=IDA

FB|FBgn0035505 Teh2 "tipE homolog 2" [Drosophila melanogaster (taxid:7227)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 69/163 (42%), Positives = 95/163 (58%)

Query:    65 FYTTSFFAMTAVSTGSSLLFLVPLYVDPAISTLTSDFNPNPVTCVTILNRTETGIFNCTW 124
             FYT+     TA+ +  + LFL+P  VDPAIST+ +D++P PVTC+ I +    GI NC+W
Sbjct:    86 FYTSVCLGTTAILSVFTFLFLIPFVVDPAISTIIADYDPVPVTCIVIDHIYAEGIKNCSW 145

Query:   125 SSCREGCTSDMYKCFQIFVKYVDYNVTFSE---EPLYVDNAI-------LLVNIKGCGYP 174
             SSCREGCTS + KC Q+FV Y    + FSE    P  +D           L+N +GCGYP
Sbjct:   146 SSCREGCTSSLTKCHQLFVNYT--RIPFSEWERNPRDLDTVNWDVSYTKFLINSEGCGYP 203

Query:   175 PEVQCANFASSYGMQD--KSYPCYYSRKNTTIVMDKYDEEEQM 215
             P   C+ FA  YG     + +PC+YSR    +V+ +Y  E  +
Sbjct:   204 PTTNCSIFARQYGFSHIGEPFPCFYSRAYPEVVIGRYSWENNL 246

GO:0016021 "integral to membrane" evidence=ISM

GO:0017080 "sodium channel regulator activity" evidence=IDA

GO:0002028 "regulation of sodium ion transport" evidence=IDA

FB|FBgn0003710 tipE "temperature-induced paralytic E" [Drosophila melanogaster (taxid:7227)]

 Score = 199 (75.1 bits), Expect = 5.5e-25, Sum P(2) = 5.5e-25
 Identities = 40/89 (44%), Positives = 52/89 (58%)

Query:    65 FYTTSFFAMTAVSTGSSLLFLVPLYVDPAISTLTSDFNPNPVTCVTILNRTETGIFNCTW 124
             FYTT+FF +    +  + LFLVP  ++PA +T+   F   P  C T       G  NC+W
Sbjct:    16 FYTTAFFILLGTFSLFAFLFLVPFVIEPAFTTIFMQFEEVPALCETYDTEIYYGAKNCSW 75

Query:   125 SSCREGCTSDMYKCFQIFVKY-VD-YNVT 151
             SSCREGCT D+Y C QI V Y ++ YN T
Sbjct:    76 SSCREGCTKDIYTCTQIRVNYRLNLYNFT 104

GO:0017080 "sodium channel regulator activity" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=NAS;IDA

GO:0034605 "cellular response to heat" evidence=IDA

GO:0002028 "regulation of sodium ion transport" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISS;IDA;TAS

GO:0045433 "male courtship behavior, veined wing generated song production" evidence=IMP

GO:0005248 "voltage-gated sodium channel activity" evidence=ISS;TAS

GO:0006814 "sodium ion transport" evidence=NAS

FB|FBgn0040697 Teh3 "tipE homolog 3" [Drosophila melanogaster (taxid:7227)]

 Score = 99 (39.9 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
 Identities = 26/73 (35%), Positives = 36/73 (49%)

Query:    73 MTAVSTGSSLLFL-VPLYVDPAISTLTSDFNPNPVTCVTILNRTETGIFNCTWSSCREGC 131
             MT V +  +L++L V +Y+ P+     S  +P PV C T     +    NC W SC E C
Sbjct:    29 MTLVLSSVALVYLTVAIYM-PSTRAFKSGIDPTPVMCTTTRAVNKD---NCEWGSCGEWC 84

Query:   132 TSDMY-KCFQIFV 143
              S     C QI+V
Sbjct:    85 LSKTSGACIQIYV 97

GO:0017080 "sodium channel regulator activity" evidence=IDA

GO:0002028 "regulation of sodium ion transport" evidence=IDA

GO:0016021 "integral to membrane" evidence=ISM

FB|FBgn0035504 Teh4 "tipE homolog 4" [Drosophila melanogaster (taxid:7227)]

 Score = 86 (35.3 bits), Expect = 0.00031, Sum P(2) = 0.00031
 Identities = 24/71 (33%), Positives = 36/71 (50%)

Query:    73 MTAVSTGSSLLFL-VPLYVDPAISTLTSDFNPNPVTCVTILNRTETGIFNCTWSSCREGC 131
             +T V +  S+++L V +Y  P++    S F  +PV C T+  +      NC W+SC E C
Sbjct:    27 LTMVLSCVSIVYLSVAIY-SPSLKAFKSGFELDPVMCQTVDRQMPN---NCPWASCGEWC 82

Query:   132 -TSDMYKCFQI 141
              T     C QI
Sbjct:    83 LTKTSGFCPQI 93

GO:0017080 "sodium channel regulator activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISM

GO:0002028 "regulation of sodium ion transport" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	315
PF03185	201	CaKB: Calcium-activated potassium channel, beta su	99.8

>PF03185 CaKB: Calcium-activated potassium channel, beta subunit; InterPro: IPR003930 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=99.80  E-value=5.7e-21  Score=171.55  Aligned_cols=157  Identities=22%  Similarity=0.477  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHhhhccceeechhhhhhhcCCCCCCeeEEEeeecccCCccCCcccccccccc-cCCccceEEEEEeecC
Q psy5445          70 FFAMTAVSTGSSLLFLVPLYVDPAISTLTSDFNPNPVTCVTILNRTETGIFNCTWSSCREGCT-SDMYKCFQIFVKYVDY  148 (315)
Q Consensus        70 ~l~~~av~S~fafLFLVPfvVdPAisTi~adFdp~Pv~CvTt~~~~~~Gl~NCTWsSCREGCT-sd~y~C~QI~VnY~~~  148 (315)
                      .+++.++++.|.+++   .++-|++...+    .++++|++......+...+|+. ||+-.|. ...|+|.||+|||+..
T Consensus        21 ~m~~~svlm~~vlGi---tiv~P~l~s~~----~~et~Ctvl~s~i~~~~v~Cs~-~cg~~c~~~s~yPCLqV~Vn~t~s   92 (201)
T PF03185_consen   21 AMMICSVLMLFVLGI---TIVKPYLKSLW----FEETNCTVLSSHIVGEWVDCSF-SCGSDCRGVSKYPCLQVFVNYTHS   92 (201)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHH---hccchhhhhcc----cccceEEEEEEEeecccccccc-cCCCCCCCcCCCCceEEEEEecCC
Confidence            344445555555555   89999999886    5899999999988888899999 9999998 6799999999999776


Q ss_pred             CCCCCCCCCCCcCceEeeccCCcCCCCcc---------chHHHHHHhCCC-CCcceeeeecCC-CceEEeecCHHHHHHH
Q psy5445         149 NVTFSEEPLYVDNAILLVNIKGCGYPPEV---------QCANFASSYGMQ-DKSYPCYYSRKN-TTIVMDKYDEEEQMYI  217 (315)
Q Consensus       149 n~~~~e~~~~~~earLliNikGCGYpP~v---------nC~~F~k~YG~d-Ga~FPCYYSr~~-p~~VVaryd~d~t~~~  217 (315)
                      +.   ....+.+|..+..|.| |.|.|.+         +=.+|.+.||.. |+.|||||+..+ |+.|+.+...++..  
T Consensus        93 g~---~a~L~~~E~~l~~n~k-CsY~P~C~~d~~~~~~~V~~~~~~~~~~~gq~f~Cfy~P~~~~~~Vil~r~y~~~~--  166 (201)
T PF03185_consen   93 GQ---TALLHHDEETLDSNPK-CSYIPKCHRDRQDNRAEVEDFQENFGQQNGQTFPCFYDPDNQPEDVILRRKYDPSV--  166 (201)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             Cc---eEEEEEchHhhccCCc-ceecCcccccHHHHHHHHHHHHHHhhhccCcceeeeecCCCCcceEEEEEecCHhH--
Confidence            42   2346889999999999 9999965         233488888888 899999999976 58899888887666  


Q ss_pred             hhhhhhhhhhHHHHhhhhhhhhh
Q psy5445         218 IIHYFIIPFIICVVCSIVLCVMH  240 (315)
Q Consensus       218 Ll~a~~VP~vlFvISvi~L~i~h  240 (315)
                      ++|+|.||..+|+.+++++.+.-
T Consensus       167 ~fhslfWP~l~lvgG~liv~mvk  189 (201)
T PF03185_consen  167 LFHSLFWPSLMLVGGVLIVAMVK  189 (201)
T ss_dssp             -----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998888877

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Ca2+-activated K+ channels are a diverse group of channels that are activated by an increase in intracellular Ca2+ concentration. They are found in the majority of nerve cells, where they modulate cell excitability and action potential. Three types of Ca2+-activated K+ channel have been characterised, termed small-conductance (SK), intermediate conductance (IK) and large conductance (BK) respectively []. BK channels (also referred to as maxi-K channels) are widely expressed in the body, being found in glandular tissue, smooth and skeletal muscle, as well as in neural tissues. They have been demonstrated to regulate arteriolar and airway diameter, and also neurotransmitter release. Each channel complex is thought to be composed of 2 types of subunit: the pore- forming (alpha) subunits and smaller accessory (beta) subunits. The beta subunit (which is thought to possess 2 TM domains) increases the Ca2+ sensitivity of the BK channel []. It does this by enhancing the time spent by the channel in burst-like open states. However, it has little effect on the durations of closed intervals between bursts, or on the numbers of open and closed states entered during gating []. ; GO: 0015269 calcium-activated potassium channel activity, 0006813 potassium ion transport, 0016020 membrane; PDB: 1JO6_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00