Psyllid ID: psy5450

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130---
MRRRRQQKLEQKLQQFRSKDGGPDTGGTLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTAIPETPNTAQQNGGDQFMNNQREYILDEDECPLAILMNHPQSRESRTIQFKI
cHHHHHHHHHHHHHHHHccccccccccEEEEccccccccccEEEEEEcccccHHHHHHHHHHHHcccccccccEEEEEEEccccccccccccccccccccccEEEEccccccHHHHHHHcccccccEEEEEEc
ccHHHHHHHHHHHHHHHccccccccccEEEEEcccccccccEEEEEEEcccHHHHHHHHHHHHHcccccccccEEEEEEEccccccccccccccccEccccccEEEEccccccEHHHHcccccccEEEEEEEc
MRRRRQQKLEQKLQQfrskdggpdtggtlkiygeslcrdvpyktlLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVntaipetpntaqqnggdqfmnnqreyildedecplailmnhpqsresrtiqfki
mrrrrqqkLEQKlqqfrskdggpdtgGTLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTAIPETPNTAQQNGGDQFMNNQREYILDEDECPLAILmnhpqsresrtiqfki
MrrrrqqkleqklqqfrSKDGGPDTGGTLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTAIPETPNTAQQNGGDQFMNNQREYILDEDECPLAILMNHPQSRESRTIQFKI
***************************TLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTAI********************EYILDEDECPLAIL****************
***************************TLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNT******************NNQREYILDEDECPLAILMNHPQSRESRTIQFKI
********************GGPDTGGTLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTAIPETPNTAQQNGGDQFMNNQREYILDEDECPLAILMNHPQ***********
**************QFRSKDGGPDTGGTLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTAIPET*******GGDQFMNNQREYILDEDECPLAILMNHPQSRESRTIQFKI
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRRRRQQKLEQKLQQFRSKDGGPDTGGTLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTAIPETPNTAQQNGGDQFMNNQREYILDEDECPLAILMNHPQSRESRTIQFKI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query133 2.2.26 [Sep-21-2011]
Q9QZQ1 1820 Afadin OS=Mus musculus GN yes N/A 0.924 0.067 0.454 9e-27
P55196 1824 Afadin OS=Homo sapiens GN yes N/A 0.924 0.067 0.454 1e-26
O35889 1829 Afadin OS=Rattus norvegic yes N/A 0.924 0.067 0.454 1e-26
Q69Z89 1099 Ras-associating and dilut no N/A 0.624 0.075 0.313 7e-05
Q96JH8 1075 Ras-associating and dilut no N/A 0.398 0.049 0.396 0.0003
>sp|Q9QZQ1|AFAD_MOUSE Afadin OS=Mus musculus GN=Mllt4 PE=1 SV=3 Back     alignment and function desciption
 Score =  118 bits (296), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 60/132 (45%), Positives = 81/132 (61%), Gaps = 9/132 (6%)

Query: 1   MRRRRQQKLEQKLQQFRSKDGGPDTGGTLKIYGESLCRDVPYKTLLLSVRDNATQVVKEM 60
           M+RRRQQKLE+++Q+FRS DG PD+GGTL+IY +SL  ++PYKT+LLS  D A   V E 
Sbjct: 222 MKRRRQQKLEKRMQEFRSSDGRPDSGGTLRIYADSLKPNIPYKTILLSTTDTADFAVAES 281

Query: 61  LAKYGLTREDAHQYCLVQVNTAIPETPNTAQQNGGDQFMNNQREYILDEDECPLAILMNH 120
           L KYGL +E+   YC+ +V   +P     + + G        +E ILD+DECPL I    
Sbjct: 282 LEKYGLEKENPKDYCIARV--MLPPGAQHSDERGA-------KEIILDDDECPLQIFREW 332

Query: 121 PQSRESRTIQFK 132
           P  +     Q K
Sbjct: 333 PSDKGILVFQLK 344
Belongs to an adhesion system, probably together with the E-cadherin-catenin system, which plays a role in the organization of homotypic, interneuronal and heterotypic cell-cell adherens junctions (AJs). Nectin- and actin-filament-binding protein that connects nectin to the actin cytoskeleton. May play a key role in the organization of epithelial structures of the embryonic ectoderm.
Mus musculus (taxid: 10090)
>sp|P55196|AFAD_HUMAN Afadin OS=Homo sapiens GN=MLLT4 PE=1 SV=3 Back     alignment and function description
>sp|O35889|AFAD_RAT Afadin OS=Rattus norvegicus GN=Mllt4 PE=1 SV=1 Back     alignment and function description
>sp|Q69Z89|RADIL_MOUSE Ras-associating and dilute domain-containing protein OS=Mus musculus GN=Radil PE=1 SV=2 Back     alignment and function description
>sp|Q96JH8|RADIL_HUMAN Ras-associating and dilute domain-containing protein OS=Homo sapiens GN=RADIL PE=1 SV=5 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query133
328715607 1909 PREDICTED: afadin-like [Acyrthosiphon pi 0.984 0.068 0.717 5e-49
350405941 2204 PREDICTED: hypothetical protein LOC10074 0.894 0.053 0.699 5e-45
345480028 2043 PREDICTED: afadin-like [Nasonia vitripen 0.887 0.057 0.684 7e-45
383865464 2805 PREDICTED: uncharacterized protein LOC10 0.887 0.042 0.691 1e-44
242025058 1961 afadin, putative [Pediculus humanus corp 0.872 0.059 0.684 3e-44
328792941 2287 PREDICTED: hypothetical protein LOC41016 0.894 0.052 0.691 5e-44
307200209 2100 Afadin [Harpegnathos saltator] 0.887 0.056 0.661 4e-43
307176324 380 Afadin [Camponotus floridanus] 0.834 0.292 0.709 1e-42
322801603 341 hypothetical protein SINV_03689 [Solenop 0.842 0.328 0.688 3e-42
170043086 336 afadin [Culex quinquefasciatus] gi|16786 0.932 0.369 0.669 1e-41
>gi|328715607|ref|XP_001944877.2| PREDICTED: afadin-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  198 bits (504), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 99/138 (71%), Positives = 108/138 (78%), Gaps = 7/138 (5%)

Query: 1   MRRRRQQKLEQKLQQFRSKDGGPDTGGTLKIYGESLCRDVPYKTLLLSVRDNATQVVKEM 60
           MRRRRQQKLE+KLQ FRSKDGGPDTGGTLKIYGESLCRDVPYKTLLLS+RD A QVVKEM
Sbjct: 216 MRRRRQQKLERKLQAFRSKDGGPDTGGTLKIYGESLCRDVPYKTLLLSIRDTAQQVVKEM 275

Query: 61  LAKYGLTREDAHQYCLVQVNTAIPETPNTAQQNGG-----DQFMNNQREYILDEDECPLA 115
           LAKYGL + D H +CLVQVN AI    N +  N G     +   NN REYILD+DECPLA
Sbjct: 276 LAKYGLDKMDPHNFCLVQVNNAIALNENNSGLNNGVPENKEILNNNNREYILDDDECPLA 335

Query: 116 ILMNHPQSRESRTIQFKI 133
           ILMNHPQ+R S  I F +
Sbjct: 336 ILMNHPQTRGS--IMFHV 351

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|350405941|ref|XP_003487601.1| PREDICTED: hypothetical protein LOC100743701 [Bombus impatiens] Back     alignment and taxonomy information
>gi|345480028|ref|XP_001605722.2| PREDICTED: afadin-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|383865464|ref|XP_003708193.1| PREDICTED: uncharacterized protein LOC100877377 [Megachile rotundata] Back     alignment and taxonomy information
>gi|242025058|ref|XP_002432943.1| afadin, putative [Pediculus humanus corporis] gi|212518452|gb|EEB20205.1| afadin, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|328792941|ref|XP_393645.4| PREDICTED: hypothetical protein LOC410161 [Apis mellifera] Back     alignment and taxonomy information
>gi|307200209|gb|EFN80503.1| Afadin [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|307176324|gb|EFN65943.1| Afadin [Camponotus floridanus] Back     alignment and taxonomy information
>gi|322801603|gb|EFZ22244.1| hypothetical protein SINV_03689 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|170043086|ref|XP_001849232.1| afadin [Culex quinquefasciatus] gi|167866509|gb|EDS29892.1| afadin [Culex quinquefasciatus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query133
FB|FBgn0259212 2051 cno "canoe" [Drosophila melano 0.481 0.031 0.765 1.6e-28
UNIPROTKB|F1N2X7 1761 MLLT4 "Uncharacterized protein 0.796 0.060 0.426 1.2e-16
MGI|MGI:1314653 1820 Mllt4 "myeloid/lymphoid or mix 0.796 0.058 0.417 2.1e-16
UNIPROTKB|Q5TIG5 1665 MLLT4 "Afadin" [Homo sapiens ( 0.796 0.063 0.417 3.1e-16
UNIPROTKB|C9JX92 1743 MLLT4 "Afadin" [Homo sapiens ( 0.796 0.060 0.417 3.2e-16
UNIPROTKB|J9NWX6 1774 MLLT4 "Uncharacterized protein 0.796 0.059 0.417 3.3e-16
UNIPROTKB|F1PSU6 1789 MLLT4 "Uncharacterized protein 0.796 0.059 0.417 3.3e-16
UNIPROTKB|A8MQ02 1824 MLLT4 "Afadin" [Homo sapiens ( 0.796 0.058 0.417 3.4e-16
UNIPROTKB|P55196 1824 MLLT4 "Afadin" [Homo sapiens ( 0.796 0.058 0.417 3.4e-16
RGD|708561 1829 Mllt4 "myeloid/lymphoid or mix 0.796 0.057 0.417 3.4e-16
FB|FBgn0259212 cno "canoe" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 259 (96.2 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
 Identities = 49/64 (76%), Positives = 55/64 (85%)

Query:    18 SKDGGPDTGGTLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLV 77
             S+DGGPDTGGTLKIYGESLC+DVPYKTLLLS+RD A  VV+EML KYGL + D   YCLV
Sbjct:   249 SRDGGPDTGGTLKIYGESLCQDVPYKTLLLSIRDCAQAVVREMLTKYGLEKADPLHYCLV 308

Query:    78 QVNT 81
             QVN+
Sbjct:   309 QVNS 312
GO:0003779 "actin binding" evidence=ISS
GO:0005912 "adherens junction" evidence=NAS;IDA;TAS
GO:0007254 "JNK cascade" evidence=NAS
GO:0007391 "dorsal closure" evidence=IMP;TAS
GO:0007265 "Ras protein signal transduction" evidence=TAS
GO:0005915 "zonula adherens" evidence=TAS
GO:0007219 "Notch signaling pathway" evidence=TAS
GO:0007394 "dorsal closure, elongation of leading edge cells" evidence=NAS
GO:0046328 "regulation of JNK cascade" evidence=IGI;IMP;NAS
GO:0007163 "establishment or maintenance of cell polarity" evidence=NAS
GO:0016318 "ommatidial rotation" evidence=IMP
GO:0005938 "cell cortex" evidence=IDA
GO:0048749 "compound eye development" evidence=IGI
GO:0005926 "connecting hemi-adherens junction" evidence=IDA
GO:0048730 "epidermis morphogenesis" evidence=IMP
GO:0048598 "embryonic morphogenesis" evidence=IMP
UNIPROTKB|F1N2X7 MLLT4 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1314653 Mllt4 "myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q5TIG5 MLLT4 "Afadin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|C9JX92 MLLT4 "Afadin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J9NWX6 MLLT4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1PSU6 MLLT4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A8MQ02 MLLT4 "Afadin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P55196 MLLT4 "Afadin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|708561 Mllt4 "myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query133
cd01781100 cd01781, AF6_RA_repeat2, Ubiquitin domain of AT-6, 2e-33
smart0031490 smart00314, RA, Ras association (RalGDS/AF-6) doma 9e-12
cd0176887 cd01768, RA, RA (Ras-associating) ubiquitin domain 2e-10
pfam0078887 pfam00788, RA, Ras association (RalGDS/AF-6) domai 2e-10
cd0015387 cd00153, RalGDS_RA, Ubiquitin domain of RalGDS-lik 0.003
>gnl|CDD|176376 cd01781, AF6_RA_repeat2, Ubiquitin domain of AT-6, second repeat Back     alignment and domain information 
 Score =  112 bits (282), Expect = 2e-33
 Identities = 45/107 (42%), Positives = 58/107 (54%), Gaps = 9/107 (8%)

Query: 26  GGTLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTAIPE 85
           GGTLKIYG SL    PYKT+LLS+ DNA ++V E L KYGL + D   YCLV+V+    +
Sbjct: 1   GGTLKIYGGSLVPTRPYKTILLSINDNADRIVGEALEKYGLEKSDPDDYCLVEVSN--DD 58

Query: 86  TPNTAQQNGGDQFMNNQREYILDEDECPLAILMNHPQSRESRTIQFK 132
              ++     D       E ILD+DECPL I+   P      +    
Sbjct: 59  DRKSSDLREID-------ERILDDDECPLFIMTAGPGENGFDSFLAI 98

The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements. Length = 100
>gnl|CDD|214612 smart00314, RA, Ras association (RalGDS/AF-6) domain Back     alignment and domain information
>gnl|CDD|176363 cd01768, RA, RA (Ras-associating) ubiquitin domain Back     alignment and domain information
>gnl|CDD|201444 pfam00788, RA, Ras association (RalGDS/AF-6) domain Back     alignment and domain information
>gnl|CDD|176351 cd00153, RalGDS_RA, Ubiquitin domain of RalGDS-like factor (RLF) and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 133
cd01781100 AF6_RA_repeat2 Ubiquitin domain of AT-6, second re 100.0
KOG1892|consensus 1629 100.0
cd0178397 DAGK_delta_RA Ubiquitin-like domain of Diacylgylce 99.93
cd0176887 RA RA (Ras-associating) ubiquitin domain. The RA ( 99.84
PF0078893 RA: Ras association (RalGDS/AF-6) domain; InterPro 99.84
smart0031490 RA Ras association (RalGDS/AF-6) domain. RasGTP ef 99.82
cd01779105 Myosin_IXb_RA ubitquitin-like domain of Myosin_IXb 99.74
cd0015387 RalGDS_RA Ubiquitin domain of RalGDS-like factor ( 99.19
cd0178093 PLC_epsilon_RA Ubiquitin-like domain of Phosphatid 99.17
cd01782112 AF6_RA_repeat1 Ubiquitin domain of AT-6, first rep 98.92
cd0177896 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour s 98.69
cd0178698 STE50_RA Ubiquitin-like domain of STE50_RA. STE50_ 98.49
cd0178487 rasfadin_RA Ubiquitin-like domain of Rasfadin. ras 98.4
cd0178785 GRB7_RA RA (RAS-associated like) domain of Grb7. G 98.31
cd0178585 PDZ_GEF_RA Ubiquitin-like domain of PDZ_GEF_RA. PD 98.3
cd0177597 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase 97.99
KOG3629|consensus728 97.83
KOG1892|consensus 1629 97.59
cd0177687 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin 97.28
KOG4239|consensus348 96.93
cd0177787 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin 96.82
KOG3751|consensus 622 96.06
KOG1574|consensus 375 95.8
smart00295 207 B41 Band 4.1 homologues. Also known as ezrin/radix 95.26
PF1147065 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: 94.81
cd0019669 UBQ Ubiquitin-like proteins. Ubiquitin homologs; I 93.1
KOG3542|consensus 1283 92.79
PF0937980 FERM_N: FERM N-terminal domain ; InterPro: IPR0189 90.42
PF14847105 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 89.73
KOG3784|consensus 407 89.06
smart0045570 RBD Raf-like Ras-binding domain. 84.1
PF0219671 RBD: Raf-like Ras-binding domain; InterPro: IPR003 82.42
cd0181877 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleo 82.23
PF00794106 PI3K_rbd: PI3-kinase family, ras-binding domain; I 81.1
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat Back     alignment and domain information 
Probab=100.00  E-value=1.9e-37  Score=220.31  Aligned_cols=98  Identities=45%  Similarity=0.741  Sum_probs=91.8

Q ss_pred             CceEEEeCCccCCCCCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEEEecCCCCCCcccccCCCCcccccceEE
Q psy5450          26 GGTLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTAIPETPNTAQQNGGDQFMNNQREY  105 (133)
Q Consensus        26 ~g~LKIYg~~L~~g~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~LveV~~~~~~~~~~~~~~~~~~~~~~~~er  105 (133)
                      +|+|||||++|+++++||||+||++|||.+||++||+||||++++|++||||||++. ++        .....|++++||
T Consensus         1 gG~LKIYg~~L~~~~~YKSIlvt~~~~a~~vV~eALeKygL~~e~p~~Y~LveV~~~-~~--------~~~~~~r~~~eR   71 (100)
T cd01781           1 GGTLKIYGGSLVPTRPYKTILLSINDNADRIVGEALEKYGLEKSDPDDYCLVEVSND-DD--------RKSSDLREIDER   71 (100)
T ss_pred             CCeEEEcCCcccCCCCeEEEEecCCccHHHHHHHHHHHhCCCccCccceEEEEEecc-cc--------cccccccceeEE
Confidence            589999999999999999999999999999999999999999999999999999886 31        234568999999


Q ss_pred             ecCCCCchhHHHhhCCCCCcceeEEEe
Q psy5450         106 ILDEDECPLAILMNHPQSRESRTIQFK  132 (133)
Q Consensus       106 vL~d~E~PL~~~~~wp~~~~~~~~~~~  132 (133)
                      +|+|+||||+++.+||+++|.++||+|
T Consensus        72 il~d~E~Pl~i~~~w~~~~g~~~f~l~   98 (100)
T cd01781          72 ILDDDECPLFIMTAGPGENGFDSFLAI   98 (100)
T ss_pred             eCCCCcCHHHHHHhCCCccCceeeEEe
Confidence            999999999999999999999999987

The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
>KOG1892|consensus Back     alignment and domain information
>cd01783 DAGK_delta_RA Ubiquitin-like domain of Diacylgylcerol kinase (DAGK) Back     alignment and domain information
>cd01768 RA RA (Ras-associating) ubiquitin domain Back     alignment and domain information
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals [] Back     alignment and domain information
>smart00314 RA Ras association (RalGDS/AF-6) domain Back     alignment and domain information
>cd01779 Myosin_IXb_RA ubitquitin-like domain of Myosin_IXb_RA Back     alignment and domain information
>cd00153 RalGDS_RA Ubiquitin domain of RalGDS-like factor (RLF) and related proteins Back     alignment and domain information
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase Back     alignment and domain information
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat Back     alignment and domain information
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein Back     alignment and domain information
>cd01786 STE50_RA Ubiquitin-like domain of STE50_RA Back     alignment and domain information
>cd01784 rasfadin_RA Ubiquitin-like domain of Rasfadin Back     alignment and domain information
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7 Back     alignment and domain information
>cd01785 PDZ_GEF_RA Ubiquitin-like domain of PDZ_GEF_RA Back     alignment and domain information
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase Back     alignment and domain information
>KOG3629|consensus Back     alignment and domain information
>KOG1892|consensus Back     alignment and domain information
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector Back     alignment and domain information
>KOG4239|consensus Back     alignment and domain information
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27) Back     alignment and domain information
>KOG3751|consensus Back     alignment and domain information
>KOG1574|consensus Back     alignment and domain information
>smart00295 B41 Band 4 Back     alignment and domain information
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly Back     alignment and domain information
>cd00196 UBQ Ubiquitin-like proteins Back     alignment and domain information
>KOG3542|consensus Back     alignment and domain information
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain Back     alignment and domain information
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B Back     alignment and domain information
>KOG3784|consensus Back     alignment and domain information
>smart00455 RBD Raf-like Ras-binding domain Back     alignment and domain information
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras Back     alignment and domain information
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor Back     alignment and domain information
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query133
1wxa_A116 Solution Structure Of Ras-Binding Domain In Mouse A 1e-14
3ec8_A166 The Crystal Structure Of The Ra Domain Of Flj10324 1e-05
>pdb|1WXA|A Chain A, Solution Structure Of Ras-Binding Domain In Mouse Af-6 Protein Length = 116 Back     alignment and structure 
Iteration: 1

 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 56/105 (53%), Gaps = 9/105 (8%)
Query: 28  TLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTAIPETP 87
           TL+IY +SL  ++PYKT+LLS  D A   V E L KYGL +E+   YC+ +V   +P   
Sbjct: 11  TLRIYADSLKPNIPYKTILLSTTDTADFAVAESLEKYGLEKENPKDYCIARV--MLPPGA 68
Query: 88  NTAQQNGGDQFMNNQREYILDEDECPLAILMNHPQSRESRTIQFK 132
             + + G        +E ILD+DECPL I    P  +     Q K
Sbjct: 69  QHSDERGA-------KEIILDDDECPLQIFREWPSDKGILVFQLK 106
>pdb|3EC8|A Chain A, The Crystal Structure Of The Ra Domain Of Flj10324 (Radil) Length = 166 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query133
1wxa_A116 Afadin, AF-6 protein; RAS-binding domain, ubiquiti 3e-34
3ec8_A166 Putative uncharacterized protein FLJ10324; beta ba 1e-27
3kh0_A140 Ralgds, ralgef, RAL guanine nucleotide dissociatio 2e-06
2c5l_C117 Phosphoinositide-specific phospholipase C PLC-epsi 8e-06
1lfd_A87 Ralgds; RAL, effector interaction; HET: GNP; 2.10A 2e-05
1rlf_A90 RLF, RLF-RBD; signal transduction protein; NMR {Mu 2e-05
1rax_A115 Protein (RA-domain of RAL guanosine dissociation s 3e-05
1ef5_A103 RGL; RAS-binding domain, RAS, RBD, RA, riken struc 4e-05
>1wxa_A Afadin, AF-6 protein; RAS-binding domain, ubiquitin-like fold, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.15.1.5 Length = 116 Back     alignment and structure
 Score =  114 bits (287), Expect = 3e-34
 Identities = 40/109 (36%), Positives = 53/109 (48%), Gaps = 9/109 (8%)

Query: 19  KDGGPDTGGTLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQ 78
             G   +GGTL+IY +SL  ++PYKT+LLS  D A   V E L KYGL +E+   YC+ +
Sbjct: 2   SSGSSGSGGTLRIYADSLKPNIPYKTILLSTTDTADFAVAESLEKYGLEKENPKDYCIAR 61

Query: 79  VNTAIPETPNTAQQNGGDQFMNNQREYILDEDECPLAILMNHPQSRESR 127
           V                       +E ILD+DECPL I    P  +   
Sbjct: 62  VML---------PPGAQHSDERGAKEIILDDDECPLQIFREWPSDKGIL 101
>3ec8_A Putative uncharacterized protein FLJ10324; beta barrel, helix, structural genomics, structural genomics consortium, SGC, cell adhesion; 2.60A {Homo sapiens} Length = 166 Back     alignment and structure
>3kh0_A Ralgds, ralgef, RAL guanine nucleotide dissociation stimulator; structural genomics consortium, SGC, RAS-association domain, alternative splicing; 2.10A {Homo sapiens} PDB: 2rgf_A 1lxd_A Length = 140 Back     alignment and structure
>2c5l_C Phosphoinositide-specific phospholipase C PLC-epsilon; signaling protein/complex, RAS, ubiquitin superfold, oncogene, GTP-binding; HET: GTP; 1.9A {Homo sapiens} SCOP: d.15.1.5 PDB: 2byf_A Length = 117 Back     alignment and structure
>1lfd_A Ralgds; RAL, effector interaction; HET: GNP; 2.10A {Rattus norvegicus} SCOP: d.15.1.5 PDB: 2b3a_A Length = 87 Back     alignment and structure
>1rlf_A RLF, RLF-RBD; signal transduction protein; NMR {Mus musculus} SCOP: d.15.1.5 Length = 90 Back     alignment and structure
>1rax_A Protein (RA-domain of RAL guanosine dissociation stimulator); RAS-binding domain, ralgef, ralgds, RAS; NMR {Homo sapiens} SCOP: d.15.1.5 Length = 115 Back     alignment and structure
>1ef5_A RGL; RAS-binding domain, RAS, RBD, RA, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: d.15.1.5 Length = 103 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query133
1wxa_A116 Afadin, AF-6 protein; RAS-binding domain, ubiquiti 100.0
3ec8_A166 Putative uncharacterized protein FLJ10324; beta ba 99.96
2c5l_C117 Phosphoinositide-specific phospholipase C PLC-epsi 99.77
2bye_A110 Phospholipase C, epsilon 1; RAS association domain 99.5
1lfd_A87 Ralgds; RAL, effector interaction; HET: GNP; 2.10A 99.09
1rax_A115 Protein (RA-domain of RAL guanosine dissociation s 99.06
1rlf_A90 RLF, RLF-RBD; signal transduction protein; NMR {Mu 99.04
1ef5_A103 RGL; RAS-binding domain, RAS, RBD, RA, riken struc 98.94
3kh0_A140 Ralgds, ralgef, RAL guanine nucleotide dissociatio 98.93
3ddc_B163 RAS association domain-containing family protein; 98.77
2uwq_A86 Apoptosis-stimulating of P53 protein 2; ASPP2, ubi 98.74
1wgr_A100 Growth factor receptor-bound protein 7; RA domain, 98.62
2cs4_A95 Protein C12ORF2; GTP binding, ubiquitin fold, stru 98.47
3tca_A 291 Amyloid beta A4 precursor protein-binding family 1 98.38
4gmv_A 281 RAS-associated and pleckstrin homology domains-CO 98.01
3hk0_A 256 Growth factor receptor-bound protein 10; GRB10, RA 97.91
2dhz_A120 RAP guanine nucleotide exchange factor (GEF)- like 96.68
1wgy_A104 RAP guanine nucleotide exchange factor 5; ubiquiti 96.27
3cf6_E 694 RAP guanine nucleotide exchange factor (GEF) 4; EP 95.93
4eku_A 392 Protein-tyrosine kinase 2-beta; proline-rich tyros 95.9
2al3_A90 TUG long isoform; TUG UBL1 insulin, endocytosis/ex 95.1
3au4_A 555 Myosin-X; protein-protein complex, motor protein c 94.12
2al6_A 375 Focal adhesion kinase 1; transferase; 2.35A {Gallu 94.05
4dxa_B 322 KREV interaction trapped protein 1; GTPase, FERM, 92.04
2j0j_A 656 Focal adhesion kinase 1; cell migration, FERM, tra 87.43
3qij_A 296 Protein 4.1; cytoskeleton, structural genomics, st 80.23
>1wxa_A Afadin, AF-6 protein; RAS-binding domain, ubiquitin-like fold, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.15.1.5 Back     alignment and structure
Probab=100.00  E-value=2.3e-35  Score=213.24  Aligned_cols=105  Identities=41%  Similarity=0.760  Sum_probs=94.7

Q ss_pred             cCCCCCCCceEEEeCCccCCCCCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEEEecCCCCCCcccccCCCCcc
Q psy5450          19 KDGGPDTGGTLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTAIPETPNTAQQNGGDQF   98 (133)
Q Consensus        19 ~d~~p~~~g~LKIYg~~L~~g~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~LveV~~~~~~~~~~~~~~~~~~~   98 (133)
                      +||+|+.+|+|||||++|+++++||||+||.+|||++||++||+||||+++++++|+||||++. +++.+ +.       
T Consensus         2 ~~~~p~~~g~lkIYg~~L~~~~~Yksvlvt~~tta~~vV~eaLekygL~~~~~~~Y~LveV~~~-~~~~~-~~-------   72 (116)
T 1wxa_A            2 SSGSSGSGGTLRIYADSLKPNIPYKTILLSTTDTADFAVAESLEKYGLEKENPKDYCIARVMLP-PGAQH-SD-------   72 (116)
T ss_dssp             CCCCCSCCCEEEECCTTTCSSSCCEEEECCSSCCHHHHHHHHHHHHTCSSSCTTTEEEEEEECC-SSCCS-SS-------
T ss_pred             CCCCCCCCeEEEEeCCcccCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCchheEEEEEECc-ccccc-cc-------
Confidence            6899999999999999999999999999999999999999999999999999999999999864 22211 10       


Q ss_pred             cccceEEecCCCCchhHHHhhCCCCCcceeEEEe
Q psy5450          99 MNNQREYILDEDECPLAILMNHPQSRESRTIQFK  132 (133)
Q Consensus        99 ~~~~~ervL~d~E~PL~~~~~wp~~~~~~~~~~~  132 (133)
                      .+++.||+|+|+||||+++++||+..|+.+|+||
T Consensus        73 ~~g~~ErvL~~~E~Pl~i~~~w~~~~g~~~F~Lr  106 (116)
T 1wxa_A           73 ERGAKEIILDDDECPLQIFREWPSDKGILVFQLK  106 (116)
T ss_dssp             STTCEEECCCSSCCHHHHHHTCCGGGCCEEEEEE
T ss_pred             CCCceEEECCCCCCHHHHHHhccccCCceEEEEE
Confidence            1478899999999999999999999999999996
>3ec8_A Putative uncharacterized protein FLJ10324; beta barrel, helix, structural genomics, structural genomics consortium, SGC, cell adhesion; 2.60A {Homo sapiens} Back     alignment and structure
>2c5l_C Phosphoinositide-specific phospholipase C PLC-epsilon; signaling protein/complex, RAS, ubiquitin superfold, oncogene, GTP-binding; HET: GTP; 1.9A {Homo sapiens} SCOP: d.15.1.5 PDB: 2byf_A Back     alignment and structure
>2bye_A Phospholipase C, epsilon 1; RAS association domain, ubiquitin superfold; NMR {Homo sapiens} SCOP: d.15.1.5 Back     alignment and structure
>1lfd_A Ralgds; RAL, effector interaction; HET: GNP; 2.10A {Rattus norvegicus} SCOP: d.15.1.5 PDB: 2b3a_A Back     alignment and structure
>1rax_A Protein (RA-domain of RAL guanosine dissociation stimulator); RAS-binding domain, ralgef, ralgds, RAS; NMR {Homo sapiens} SCOP: d.15.1.5 Back     alignment and structure
>1rlf_A RLF, RLF-RBD; signal transduction protein; NMR {Mus musculus} SCOP: d.15.1.5 Back     alignment and structure
>1ef5_A RGL; RAS-binding domain, RAS, RBD, RA, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: d.15.1.5 Back     alignment and structure
>3kh0_A Ralgds, ralgef, RAL guanine nucleotide dissociation stimulator; structural genomics consortium, SGC, RAS-association domain, alternative splicing; 2.10A {Homo sapiens} PDB: 2rgf_A 1lxd_A Back     alignment and structure
>3ddc_B RAS association domain-containing family protein; oncogene, tumorsuppressor, ubiquitin fold, RAS effector, RAP rassf1, rassf5, RAPL, NORE1, GMPPNP; HET: GNP; 1.80A {Mus musculus} Back     alignment and structure
>2uwq_A Apoptosis-stimulating of P53 protein 2; ASPP2, ubiquitin-like, SH3-domain, cell cycle, ANK repeat, SH3-binding; NMR {Homo sapiens} Back     alignment and structure
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5 Back     alignment and structure
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5 Back     alignment and structure
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus} Back     alignment and structure
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A Back     alignment and structure
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens} Back     alignment and structure
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5 Back     alignment and structure
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Back     alignment and structure
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens} Back     alignment and structure
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2 Back     alignment and structure
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A Back     alignment and structure
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A Back     alignment and structure
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A Back     alignment and structure
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Back     alignment and structure
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 133
d1wxaa1103 d.15.1.5 (A:8-110) Afadin {Mouse (Mus musculus) [T 5e-26
d2byea1109 d.15.1.5 (A:2-110) Phospholipase C-epsilon-1 {Huma 5e-19
d1rlfa_90 d.15.1.5 (A:) RalGDS-like factor, Rlf {Mouse (Mus 2e-07
d1lfda_87 d.15.1.5 (A:) Ral guanosine-nucleotide exchange fa 8e-06
d1ef5a_88 d.15.1.5 (A:) Rgl {Mouse (Mus musculus) [TaxId: 10 3e-05
>d1wxaa1 d.15.1.5 (A:8-110) Afadin {Mouse (Mus musculus) [TaxId: 10090]} Length = 103 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: Afadin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 91.9 bits (228), Expect = 5e-26
 Identities = 41/108 (37%), Positives = 54/108 (50%), Gaps = 9/108 (8%)

Query: 25  TGGTLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTAIP 84
           +GGTL+IY +SL  ++PYKT+LLS  D A   V E L KYGL +E+   YC+ +V     
Sbjct: 1   SGGTLRIYADSLKPNIPYKTILLSTTDTADFAVAESLEKYGLEKENPKDYCIARVML--- 57

Query: 85  ETPNTAQQNGGDQFMNNQREYILDEDECPLAILMNHPQSRESRTIQFK 132
                             +E ILD+DECPL I    P  +     Q K
Sbjct: 58  ------PPGAQHSDERGAKEIILDDDECPLQIFREWPSDKGILVFQLK 99
>d2byea1 d.15.1.5 (A:2-110) Phospholipase C-epsilon-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109 Back     information, alignment and structure
>d1rlfa_ d.15.1.5 (A:) RalGDS-like factor, Rlf {Mouse (Mus musculus) [TaxId: 10090]} Length = 90 Back     information, alignment and structure
>d1lfda_ d.15.1.5 (A:) Ral guanosine-nucleotide exchange factor, RalGDS {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 87 Back     information, alignment and structure
>d1ef5a_ d.15.1.5 (A:) Rgl {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query133
d1wxaa1103 Afadin {Mouse (Mus musculus) [TaxId: 10090]} 99.97
d2byea1109 Phospholipase C-epsilon-1 {Human (Homo sapiens) [T 99.87
d1wgra_100 Growth factor receptor-bound protein 7, GRB-7 {Hum 99.34
d1rlfa_90 RalGDS-like factor, Rlf {Mouse (Mus musculus) [Tax 99.15
d2c5lc1106 Phospholipase C-epsilon-1 {Human (Homo sapiens) [T 99.12
d1lfda_87 Ral guanosine-nucleotide exchange factor, RalGDS { 99.1
d1ef5a_88 Rgl {Mouse (Mus musculus) [TaxId: 10090]} 99.0
d2cs4a184 Ras association domain-containing protein 8 {Human 98.54
d1wgya_104 Rap guanine nucleotide exchange factor 5, RapGEF5 96.48
d2al3a176 Tether containing UBX domain for GLUT4 (Tug) {Mous 95.59
d1wxma173 A-Raf proto-oncogene serine/threonine-protein kina 87.64
d2al6a3100 Focal adhesion kinase 1 {Chicken (Gallus gallus) [ 82.24
>d1wxaa1 d.15.1.5 (A:8-110) Afadin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: Afadin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=4e-31  Score=184.37  Aligned_cols=99  Identities=42%  Similarity=0.752  Sum_probs=89.6

Q ss_pred             CCceEEEeCCccCCCCCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEEEecCCCCCCcccccCCCCcccccceE
Q psy5450          25 TGGTLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTAIPETPNTAQQNGGDQFMNNQRE  104 (133)
Q Consensus        25 ~~g~LKIYg~~L~~g~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~LveV~~~~~~~~~~~~~~~~~~~~~~~~e  104 (133)
                      .||+|||||++|+++++||+|+||++|||++||++||+||||+.+++++|+|+||.+. +++        ....+.+++|
T Consensus         1 ~gG~lkVy~~~l~~~~~yk~l~vs~~tTa~eVI~~~L~k~~l~~~~~~~y~L~ev~~~-~~~--------~~~~~~~~~e   71 (103)
T d1wxaa1           1 SGGTLRIYADSLKPNIPYKTILLSTTDTADFAVAESLEKYGLEKENPKDYCIARVMLP-PGA--------QHSDERGAKE   71 (103)
T ss_dssp             CCCEEEECCTTTCSSSCCEEEECCSSCCHHHHHHHHHHHHTCSSSCTTTEEEEEEECC-SSC--------CSSSSTTCEE
T ss_pred             CCcEEEEEcCccCCCCCeEEEEECCCCcHHHHHHHHHHHhCCCCCChhhEEEEEEEec-CCC--------cccccCCcEE
Confidence            4799999999999999999999999999999999999999999999999999999886 321        1123468899


Q ss_pred             EecCCCCchhHHHhhCCCCCcceeEEEe
Q psy5450         105 YILDEDECPLAILMNHPQSRESRTIQFK  132 (133)
Q Consensus       105 rvL~d~E~PL~~~~~wp~~~~~~~~~~~  132 (133)
                      |+|+|+||||+++..||+..|+..|+||
T Consensus        72 R~L~~~E~PL~l~~~W~~~~~~~rF~Lr   99 (103)
T d1wxaa1          72 IILDDDECPLQIFREWPSDKGILVFQLK   99 (103)
T ss_dssp             ECCCSSCCHHHHHHTCCGGGCCEEEEEE
T ss_pred             EEcCCCCCHHHHHHhCccCCCceEEEEe
Confidence            9999999999999999999999999986
>d2byea1 d.15.1.5 (A:2-110) Phospholipase C-epsilon-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgra_ d.15.1.5 (A:) Growth factor receptor-bound protein 7, GRB-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rlfa_ d.15.1.5 (A:) RalGDS-like factor, Rlf {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2c5lc1 d.15.1.5 (C:2134-2239) Phospholipase C-epsilon-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lfda_ d.15.1.5 (A:) Ral guanosine-nucleotide exchange factor, RalGDS {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ef5a_ d.15.1.5 (A:) Rgl {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cs4a1 d.15.1.5 (A:8-91) Ras association domain-containing protein 8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgya_ d.15.1.5 (A:) Rap guanine nucleotide exchange factor 5, RapGEF5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene serine/threonine-protein kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2al6a3 d.15.1.4 (A:31-130) Focal adhesion kinase 1 {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure