Psyllid ID: psy5460

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990----
METDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQVRVLTEAVDDITTIDDFLAVSENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVAAEMDNYEPGIYTERVLEAIKVLREQVMPNFATRVEVAVDALSTTPPKEVDENEFIDASRLVYDGVREIRRAVLMNRTDEELDPEDIELDDQYTTSEAATMPRSKELGVDEYPDISGITTAREAMRKMTEEDKQKIAQQVEFFRSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVAKKSHTAIVDRILLVFSFMETDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQSQVAQENMDVFKEAWDSQVRVLTEAVDDITTIDDFLAVSENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVAAEMDNYEPGIYTERVLEAIKVLREQGMEAMRKMTEEDKQKIAQQVEFFRSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQKPTNKDLLAYLQRIALYCHQLNITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVALDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVASPIVVWKMKAPEKKPLVRPEKPEEVRAKVRKGSQKKVQNPIKALSEFQSPTESV
cccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEcccccccccccccccHHHHHHHHHcccccccccHHHHHHHcccccccc
cccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHccccccccccccccccccccccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEccccccccHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccHHHHcccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHcccccHcHHHHHHHHcccccccccccccHHHcccccccccccccccccccccccccHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEcccccccccEEEEEEccccccccccccccHHHHHHHHHHcccccccHHHHHHHcccccccc
METDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEVANLAcsmsnnedGVKMVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQVRVLTEAVDDITTIDDFLAVSENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVAaemdnyepgiyTERVLEAIKVLREQVMPNFATRVEVAVDalsttppkevdenefidasrlVYDGVREIRRAVLMnrtdeeldpedielddqyttseaatmprskelgvdeypdisgITTAREAMRKMTEEDKQKIAQQVEFFRSeklkfdrevakwddtgnDIIVLAKHMCMIMMEmtdftrgrgplktTMDVINAAKKISEAGTNLDKLTRQIadqcpesstkKDLLAYLQRIALYCHQLNITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYvastkyprqnqvakksHTAIVDRILLVFSFMETDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEVANLAcsmsnnedGVKMVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQSQVAQENMDVFKEAWDSQVRVLTEAVDDITTIDDFLAVSENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVAaemdnyepgiyTERVLEAIKVLREQGMEAMRKMTEEDKQKIAQQVEFFRSeklkfdrevakwddtgnDIIVLAKHMCMIMMEmtdftrgrgplktTMDVINAAKKISEAGTNLDKLTRQIadqcpesstkKDLLAYLQRIALYCHQLnitskvkadvqkptNKDLLAYLQRIALYCHQLNITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYvastkyprqnqvaLDSATSLIQAAKNLMNAVVLTVKSSYvastkyprqnqvaspIVVWkmkapekkplvrpekpeEVRAKVRKGSQKKVQNPIKAlsefqsptesv
METDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQVRVLTEAVDDITTIDDFLAVSENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVaaemdnyepgiYTERVLEAIKVLREQVMPNFATRVEVAVdalsttppkevdenefidasrlvydgVREIRRAVlmnrtdeeldpedielddqyttseaatmprskelgvdeypdiSGITTAREAMRKMTEEDKQKIAQQveffrseklkfdrevakwddtgndIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKiseagtnldKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVAStkyprqnqvakkshtAIVDRILLVFSFMETDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQSQVAQENMDVFKEAWDSQVRVLTEAVDDITTIDDFLAVSENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVaaemdnyepgiyteRVLEAIKVLREQGMEAMRKMTEEDKQKIAQQVEffrseklkfdrevakwddtgndIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKiseagtnldKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITskvkadvqkptNKDLLAYLQRIALYCHQLNITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVALDSATSLIQAAKNLMNAVVLTVKSSyvastkyprqnqvaspivvwkmkapekkplvrpekpeevrakvrkgsqkkvqnpikalsefqsptesv
METDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQVRVLTEAVDDITTIDDFLAVSENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVAAEMDNYEPGIYTERVLEAIKVLREQVMPNFATRVEVAVDALSTTPPKEVDENEFIDASRLVYDGVREIRRAVLMNRTdeeldpedielddQYTTSEAATMPRSKELGVDEYPDISGITTAREAMRKMTEEDKQKIAQQVEFFRSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVAKKSHTAIVDRILLVFSFMETDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQSQVAQENMDVFKEAWDSQVRVLTEAVDDITTIDDFLAVSENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVAAEMDNYEPGIYTERVLEAIKVLREQGMEAMRKMTEEDKQKIAQQVEFFRSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQKPTNKDLLAYLQRIALYCHQLNITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVALDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVASPIVVWKMKAPEKKPLVRPEKPEEVRAKVRKGSQKKVQNPIKALSEFQSPTESV
*****PILVLIE****************FADHANKLVEVANLACSMSNNEDGVKMVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQVRVLTEAVDDITTIDDFLAVSENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVAAEMDNYEPGIYTERVLEAIKVLREQVMPNFATRVEVAVDALST*******ENEFIDASRLVYDGVREIRRAVLM****************************************************************VEFFRSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKI************************KDLLAYLQRIALYCHQLNITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVAKKSHTAIVDRILLVFSFMETDIPILVLIEAA**************FADHANKLVEVANLACSMSNNEDGVKMVRYAASSIASLYTQVINAARILAARP********MDVFKEAW******AQENMDVFKEAWDSQVRVLTEAVDDITTIDDFLAVSENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVAAEMDNYEPGIYTERVLEAIKVLR********************QVEFFRSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKI************************KDLLAYLQRIALYCHQLNITSKVKADVQKPTNKDLLAYLQRIALYCHQLNITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVALDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVASPIVVWK***********************************************
*ETDIPILVLIEAAR*G**KEVEKAAENFADHANKLVEVA***************VRYAASSIASLYTQVINAARI***********ENMDVFKEAWDSQVRVLTEAVDDITTIDDFLAVSENHILEDVNKC***L******ILDRTAGAIRGRSARVANVV*A*****E*GIYTERVLEAIKVLREQVMPNFATRVEVAVDALS**********EFIDASRLVYDGVREIRRAVL********************************************************************************************LAKHMCM*********************INAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSK***************GLDSATSLIQAAKNLMNAVVLTVKSSYV************KKSHTAIVDRILLVFSFMETDIPILVL***************AENFADHANKLVEVANL***********KMVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQSQVAQENMDVFKEAWDSQVRVLTEA*******************EDV**********************************************************************************RSEKLKFDREVAKWDDTGNDIIV****************************************NLDKLTRQIA******STKKDLLAYLQRIALYCHQLNITSKVKADVQKPTNKDLLAYLQRIALYCHQLNITSK******************SATSLIQAAKNLMNAVVLTVKSSYVA******************IQAAKNLMNAVVLTVKSSYVASTKYPRQNQVAS*IV*******************************************Q******
METDIPILVLIEAARS********AAENFADHANKLVEVANLACSMSNNEDGVKMVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQVRVLTEAVDDITTIDDFLAVSENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVAAEMDNYEPGIYTERVLEAIKVLREQVMPNFATRVEVAVDALSTTPPKEVDENEFIDASRLVYDGVREIRRAVLMNRTDEELDPEDIELDDQYTTSEAATMPRSKELGVDEYPDISGITTAREAMRKMTEEDKQKIAQQVEFFRSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKY**********HTAIVDRILLVFSFMETDIPILVLIEAARS********AAENFADHANKLVEVANLACSMSNNEDGVKMVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQSQVAQENMDVFKEAWDSQVRVLTEAVDDITTIDDFLAVSENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVAAEMDNYEPGIYTERVLEAIKVLREQGMEAMRKMTEEDKQKIAQQVEFFRSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQKPTNKDLLAYLQRIALYCHQLNITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVALDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVASPIVVWKMKAPEK**************************PIKAL**********
*ETDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQVRVLTEAVDDITTIDDFLAVSENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVAAEMDNYEPGIYTERVLEAIKVLREQVMPNFATRVEVAVDALSTTPPKEVDENEFIDASRLVYDGVREIRRAVLMNRTD*****E***********************************A*E*MRKMTEEDKQKIAQQVEFFRSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVAKKSHTAIVDRILLVFSFMETDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQSQVAQENMDVFKEAWDSQVRVLTEAVDDITTIDDFLAVSENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVAAEMDNYEPGIYTERVLEAIKVLREQGMEAMRKMTEEDKQKIAQQVEFFRSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQKPTNKDLLAYLQRIALYCHQLNITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVALDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVASPIVVWKMKAPEKKPLVRPEKPEEVRAKVRKGSQKKVQN*IKALSEFQ******
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METDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQVRVLTEAVDDITTIDDFLAVSENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVAAEMDNYEPGIYTERVLEAIKVLREQVMPNFATRVEVAVDALSTTPPKEVDENEFIDASRLVYDGVREIRRAVLMNRTDEELDPEDIELDDQYTTSEAATMPRSKELGVDEYPDISGITTAREAMRKMTEEDKQKIAQQVEFFRSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVAKKSHTAIVDRILLVFSFMETDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQSQVAQENMDVFKEAWDSQVRVLTEAVDDITTIDDFLAVSENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVAAEMDNYEPGIYTERVLEAIKVLREQGMEAMRKMTEEDKQKIAQQVEFFRSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQKPTNKDLLAYLQRIALYCHQLNITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVALDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVASPIVVWKMKAPEKKPLVRPEKPEEVRAKVRKGSQKKVQNPIKALSEFQSPTESV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query994 2.2.26 [Sep-21-2011]
P35220917 Catenin alpha OS=Drosophi yes N/A 0.461 0.500 0.772 0.0
B7ZC77865 Catenin alpha-2 OS=Danio yes N/A 0.453 0.521 0.713 0.0
Q5R416905 Catenin alpha-2 OS=Pongo yes N/A 0.453 0.498 0.706 0.0
P30997906 Catenin alpha-2 OS=Gallus yes N/A 0.453 0.497 0.706 0.0
P26231906 Catenin alpha-1 OS=Mus mu no N/A 0.458 0.503 0.678 0.0
P35221906 Catenin alpha-1 OS=Homo s no N/A 0.458 0.503 0.678 0.0
Q3MHM6906 Catenin alpha-1 OS=Bos ta yes N/A 0.458 0.503 0.676 0.0
Q59I72907 Catenin alpha-1 OS=Orycto no N/A 0.458 0.502 0.678 0.0
Q6GLP0966 Catenin alpha-2 OS=Xenopu N/A N/A 0.453 0.466 0.638 1e-180
Q61301953 Catenin alpha-2 OS=Mus mu no N/A 0.453 0.473 0.639 1e-180
>sp|P35220|CTNA_DROME Catenin alpha OS=Drosophila melanogaster GN=alpha-Cat PE=1 SV=2 Back     alignment and function desciption
 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/471 (77%), Positives = 396/471 (84%), Gaps = 12/471 (2%)

Query: 1   METDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAA 60
           +ET  P+L LIEAA+SGNEK+V + +E F  HA KLVEVANL CSMSNNEDGVKMVRYAA
Sbjct: 398 LETTTPLLDLIEAAKSGNEKKVREKSEIFTKHAEKLVEVANLVCSMSNNEDGVKMVRYAA 457

Query: 61  SSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQVRVLTEAVDDITTIDDFLAV 120
           + I SL  QVINAA IL  RP SKVAQENM  +++AW+ QVR+LTEAVDDITTIDDFLAV
Sbjct: 458 AQIESLCPQVINAASILTVRPNSKVAQENMTTYRQAWEVQVRILTEAVDDITTIDDFLAV 517

Query: 121 SENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVAAEMDNYEPGIYTERVLE 180
           SENHILEDVNKCV+ALQ GDA  L  TAGAI+GRS+RV NVV AEMDNYEP IYT+RVLE
Sbjct: 518 SENHILEDVNKCVMALQVGDARDLRATAGAIQGRSSRVCNVVEAEMDNYEPCIYTKRVLE 577

Query: 181 AIKVLREQVMPNFATRVEVAVDALSTTPPKEVDENEFIDASRLVYDGVREIRRAVLMNRT 240
           A+KVLR+QVM  F  RV  AV ALS    K+VDEN+FIDASRLVYDGVREIRRAVLMNR+
Sbjct: 578 AVKVLRDQVMMKFDQRVGAAVGALSNNSNKDVDENDFIDASRLVYDGVREIRRAVLMNRS 637

Query: 241 DEELDP-------EDIELDDQYTTSEAATMPRSKELGVDEYPDISGITTAREAMRKMTEE 293
            E+LD        ED+ L+ +  +S       + +  VDEYPDISGI TAREAMRKMTEE
Sbjct: 638 SEDLDTDTEFEPVEDLTLETRSRSS-----AHTGDQTVDEYPDISGICTAREAMRKMTEE 692

Query: 294 DKQKIAQQVEFFRSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTT 353
           DKQKIAQQVE FR EKL FD EVAKWDDTGNDII LAKHMCMIMMEMTDFTRGRGPLKTT
Sbjct: 693 DKQKIAQQVELFRREKLTFDSEVAKWDDTGNDIIFLAKHMCMIMMEMTDFTRGRGPLKTT 752

Query: 354 MDVINAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKAD 413
           MDVINAAKKISEAGT LDKLTR+IA+QCPESSTKKDLLAYLQRIALYCHQ+ ITSKVKAD
Sbjct: 753 MDVINAAKKISEAGTKLDKLTREIAEQCPESSTKKDLLAYLQRIALYCHQIQITSKVKAD 812

Query: 414 VQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVA 464
           VQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVK SYVASTKY RQ  V+
Sbjct: 813 VQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKYSYVASTKYTRQGTVS 863
Associates with the cytoplasmic domain of a variety of cadherins. The association of catenins to cadherins produces a complex which is linked to the actin filament network, and which seems to be of primary importance for cadherins cell-adhesion properties. Can associate with the armadillo protein.
Drosophila melanogaster (taxid: 7227)
>sp|B7ZC77|CTNA2_DANRE Catenin alpha-2 OS=Danio rerio GN=Ctnna2 PE=2 SV=1 Back     alignment and function description
>sp|Q5R416|CTNA2_PONAB Catenin alpha-2 OS=Pongo abelii GN=CTNNA2 PE=2 SV=3 Back     alignment and function description
>sp|P30997|CTNA2_CHICK Catenin alpha-2 OS=Gallus gallus GN=CTNNA2 PE=1 SV=1 Back     alignment and function description
>sp|P26231|CTNA1_MOUSE Catenin alpha-1 OS=Mus musculus GN=Ctnna1 PE=1 SV=1 Back     alignment and function description
>sp|P35221|CTNA1_HUMAN Catenin alpha-1 OS=Homo sapiens GN=CTNNA1 PE=1 SV=1 Back     alignment and function description
>sp|Q3MHM6|CTNA1_BOVIN Catenin alpha-1 OS=Bos taurus GN=CTNNA1 PE=2 SV=1 Back     alignment and function description
>sp|Q59I72|CTNA1_RABIT Catenin alpha-1 OS=Oryctolagus cuniculus GN=CTNNA1 PE=3 SV=1 Back     alignment and function description
>sp|Q6GLP0|CTNA2_XENLA Catenin alpha-2 OS=Xenopus laevis GN=ctnna2 PE=2 SV=1 Back     alignment and function description
>sp|Q61301|CTNA2_MOUSE Catenin alpha-2 OS=Mus musculus GN=Ctnna2 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query994
193673870911 PREDICTED: catenin alpha-like [Acyrthosi 0.392 0.428 0.874 0.0
242018616944 alpha-1 catenin, putative [Pediculus hum 0.466 0.491 0.858 0.0
321479180918 hypothetical protein DAPPUDRAFT_309973 [ 0.465 0.504 0.834 0.0
340725848909 PREDICTED: catenin alpha-like [Bombus te 0.465 0.509 0.840 0.0
350397044909 PREDICTED: catenin alpha-like [Bombus im 0.465 0.509 0.840 0.0
91076138906 PREDICTED: similar to actin binding [Tri 0.466 0.512 0.834 0.0
383851832909 PREDICTED: catenin alpha-like [Megachile 0.465 0.509 0.838 0.0
345482997909 PREDICTED: LOW QUALITY PROTEIN: catenin 0.465 0.509 0.840 0.0
66525427909 PREDICTED: catenin alpha [Apis mellifera 0.465 0.509 0.838 0.0
380024617909 PREDICTED: LOW QUALITY PROTEIN: catenin 0.465 0.509 0.838 0.0
>gi|193673870|ref|XP_001944375.1| PREDICTED: catenin alpha-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  829 bits (2142), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/461 (87%), Positives = 425/461 (92%)

Query: 1   METDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAA 60
           +ET +P+LVLIEAA SG+EKEVE+ A  F +HANKLVEVANLACSMSNNEDGVKMVR AA
Sbjct: 394 LETSVPLLVLIEAAHSGDEKEVEECALVFTEHANKLVEVANLACSMSNNEDGVKMVRTAA 453

Query: 61  SSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQVRVLTEAVDDITTIDDFLAV 120
           + I +L  QVINAAR+LA RPRSK+A +NMDVF++AW +QVR+LTEAVDDITTIDDFLAV
Sbjct: 454 AQIENLCPQVINAARVLAVRPRSKLALDNMDVFRDAWQAQVRLLTEAVDDITTIDDFLAV 513

Query: 121 SENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVAAEMDNYEPGIYTERVLE 180
           SE+HILEDVNKCVLALQEG AD LDRTAGAIRGRSARV NVVAAEMDNYEPGIYTERVLE
Sbjct: 514 SESHILEDVNKCVLALQEGSADPLDRTAGAIRGRSARVCNVVAAEMDNYEPGIYTERVLE 573

Query: 181 AIKVLREQVMPNFATRVEVAVDALSTTPPKEVDENEFIDASRLVYDGVREIRRAVLMNRT 240
           AIKVLR+QVMPNFA RVE+AVDALST PPKEVDEN+FIDASRLVYDGVREIRRAVLMNRT
Sbjct: 574 AIKVLRDQVMPNFAQRVELAVDALSTNPPKEVDENDFIDASRLVYDGVREIRRAVLMNRT 633

Query: 241 DEELDPEDIELDDQYTTSEAATMPRSKELGVDEYPDISGITTAREAMRKMTEEDKQKIAQ 300
           DEELDPEDIE D+ YT    +         +DEYPDISGITTAREAMRKMTEEDKQKIAQ
Sbjct: 634 DEELDPEDIEFDEHYTIDTRSRSSAHTGEPLDEYPDISGITTAREAMRKMTEEDKQKIAQ 693

Query: 301 QVEFFRSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAA 360
           QVEFFRSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAA
Sbjct: 694 QVEFFRSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAA 753

Query: 361 KKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQNISGE 420
           KKISEAGT LDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQNISGE
Sbjct: 754 KKISEAGTKLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQNISGE 813

Query: 421 LIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQN 461
           LIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQ 
Sbjct: 814 LIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQG 854

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|242018616|ref|XP_002429770.1| alpha-1 catenin, putative [Pediculus humanus corporis] gi|212514782|gb|EEB17032.1| alpha-1 catenin, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|321479180|gb|EFX90136.1| hypothetical protein DAPPUDRAFT_309973 [Daphnia pulex] Back     alignment and taxonomy information
>gi|340725848|ref|XP_003401277.1| PREDICTED: catenin alpha-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350397044|ref|XP_003484750.1| PREDICTED: catenin alpha-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|91076138|ref|XP_970159.1| PREDICTED: similar to actin binding [Tribolium castaneum] gi|270014573|gb|EFA11021.1| hypothetical protein TcasGA2_TC004609 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|383851832|ref|XP_003701435.1| PREDICTED: catenin alpha-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|345482997|ref|XP_003424721.1| PREDICTED: LOW QUALITY PROTEIN: catenin alpha-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|66525427|ref|XP_625229.1| PREDICTED: catenin alpha [Apis mellifera] Back     alignment and taxonomy information
>gi|380024617|ref|XP_003696090.1| PREDICTED: LOW QUALITY PROTEIN: catenin alpha-like [Apis florea] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query994
FB|FBgn0010215917 alpha-Cat "alpha Catenin" [Dro 0.466 0.505 0.770 1.1e-220
ZFIN|ZDB-GENE-060815-3865 ctnna2 "catenin (cadherin-asso 0.454 0.522 0.701 1.3e-195
UNIPROTKB|Q5R416905 CTNNA2 "Catenin alpha-2" [Pong 0.454 0.499 0.694 3.4e-193
UNIPROTKB|F1P510905 CTNNA2 "Catenin alpha-2" [Gall 0.454 0.499 0.694 3.4e-193
UNIPROTKB|P30997906 CTNNA2 "Catenin alpha-2" [Gall 0.454 0.498 0.694 3.4e-193
UNIPROTKB|F1SNX6521 CTNNA2 "Uncharacterized protei 0.454 0.867 0.694 3.4e-193
ZFIN|ZDB-GENE-991207-24907 ctnna1 "catenin (cadherin-asso 0.465 0.510 0.658 1.1e-181
UNIPROTKB|P26232953 CTNNA2 "Catenin alpha-2" [Homo 0.420 0.438 0.677 7.6e-161
MGI|MGI:88275953 Ctnna2 "catenin (cadherin asso 0.420 0.438 0.677 7.6e-161
UNIPROTKB|Q6GLP0966 ctnna2 "Catenin alpha-2" [Xeno 0.420 0.432 0.677 1.6e-160
FB|FBgn0010215 alpha-Cat "alpha Catenin" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1742 (618.3 bits), Expect = 1.1e-220, Sum P(2) = 1.1e-220
 Identities = 359/466 (77%), Positives = 389/466 (83%)

Query:     1 METDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAA 60
             +ET  P+L LIEAA+SGNEK+V + +E F  HA KLVEVANL CSMSNNEDGVKMVRYAA
Sbjct:   398 LETTTPLLDLIEAAKSGNEKKVREKSEIFTKHAEKLVEVANLVCSMSNNEDGVKMVRYAA 457

Query:    61 SSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQVRVLTEAVDDITTIDDFLAV 120
             + I SL  QVINAA IL  RP SKVAQENM  +++AW+ QVR+LTEAVDDITTIDDFLAV
Sbjct:   458 AQIESLCPQVINAASILTVRPNSKVAQENMTTYRQAWEVQVRILTEAVDDITTIDDFLAV 517

Query:   121 SENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVAAEMDNYEPGIYTERVLE 180
             SENHILEDVNKCV+ALQ GDA  L  TAGAI+GRS+RV NVV AEMDNYEP IYT+RVLE
Sbjct:   518 SENHILEDVNKCVMALQVGDARDLRATAGAIQGRSSRVCNVVEAEMDNYEPCIYTKRVLE 577

Query:   181 AIKVLREQVMPNFATRVEVAVDALSTTPPKEVDENEFIDASRLVYDGVREIRRAVLMNRT 240
             A+KVLR+QVM  F  RV  AV ALS    K+VDEN+FIDASRLVYDGVREIRRAVLMNR+
Sbjct:   578 AVKVLRDQVMMKFDQRVGAAVGALSNNSNKDVDENDFIDASRLVYDGVREIRRAVLMNRS 637

Query:   241 XXXXXXXXXXXXXQYTTSE--AATMPRSKELGVDEYPDISGITTAREAMRKMTEEDKQKI 298
                          +  T E  + +   + +  VDEYPDISGI TAREAMRKMTEEDKQKI
Sbjct:   638 SEDLDTDTEFEPVEDLTLETRSRSSAHTGDQTVDEYPDISGICTAREAMRKMTEEDKQKI 697

Query:   299 AQQVEFFRSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVIN 358
             AQQVE FR EKL FD EVAKWDDTGNDII LAKHMCMIMMEMTDFTRGRGPLKTTMDVIN
Sbjct:   698 AQQVELFRREKLTFDSEVAKWDDTGNDIIFLAKHMCMIMMEMTDFTRGRGPLKTTMDVIN 757

Query:   359 AAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQNIS 418
             AAKKISEAGT LDKLTR+IA+QCPESSTKKDLLAYLQRIALYCHQ+ ITSKVKADVQNIS
Sbjct:   758 AAKKISEAGTKLDKLTREIAEQCPESSTKKDLLAYLQRIALYCHQIQITSKVKADVQNIS 817

Query:   419 GELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVA 464
             GELIVSGLDSATSLIQAAKNLMNAVVLTVK SYVASTKY RQ  V+
Sbjct:   818 GELIVSGLDSATSLIQAAKNLMNAVVLTVKYSYVASTKYTRQGTVS 863
GO:0005515 "protein binding" evidence=IPI
GO:0005915 "zonula adherens" evidence=NAS
GO:0016342 "catenin complex" evidence=ISS
GO:0007016 "cytoskeletal anchoring at plasma membrane" evidence=ISS
GO:0003779 "actin binding" evidence=ISS
GO:0008092 "cytoskeletal protein binding" evidence=ISS
GO:0030720 "oocyte localization involved in germarium-derived egg chamber formation" evidence=TAS
GO:0005912 "adherens junction" evidence=NAS
GO:0005914 "spot adherens junction" evidence=NAS
GO:0030055 "cell-substrate junction" evidence=NAS
GO:0007155 "cell adhesion" evidence=IEA;NAS
GO:0045296 "cadherin binding" evidence=IEA;NAS
GO:0007163 "establishment or maintenance of cell polarity" evidence=NAS
GO:0005198 "structural molecule activity" evidence=IEA
GO:0015629 "actin cytoskeleton" evidence=IEA
GO:0005913 "cell-cell adherens junction" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
ZFIN|ZDB-GENE-060815-3 ctnna2 "catenin (cadherin-associated protein), alpha 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R416 CTNNA2 "Catenin alpha-2" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|F1P510 CTNNA2 "Catenin alpha-2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P30997 CTNNA2 "Catenin alpha-2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1SNX6 CTNNA2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-991207-24 ctnna1 "catenin (cadherin-associated protein), alpha 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P26232 CTNNA2 "Catenin alpha-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:88275 Ctnna2 "catenin (cadherin associated protein), alpha 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q6GLP0 ctnna2 "Catenin alpha-2" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P35220CTNA_DROMENo assigned EC number0.77280.46170.5005yesN/A
P30997CTNA2_CHICKNo assigned EC number0.70650.45370.4977yesN/A
Q5R416CTNA2_PONABNo assigned EC number0.70650.45370.4983yesN/A
B7ZC77CTNA2_DANRENo assigned EC number0.71300.45370.5213yesN/A
Q3MHM6CTNA1_BOVINNo assigned EC number0.67670.45870.5033yesN/A
A4IGI7CTNA2_XENTRNo assigned EC number0.63060.45370.4668yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query994
pfam01044850 pfam01044, Vinculin, Vinculin family 0.0
pfam01044850 pfam01044, Vinculin, Vinculin family 2e-80
pfam01044850 pfam01044, Vinculin, Vinculin family 7e-76
PRK14478475 PRK14478, PRK14478, nitrogenase molybdenum-cofacto 0.003
>gnl|CDD|216263 pfam01044, Vinculin, Vinculin family Back     alignment and domain information 
 Score =  632 bits (1632), Expect = 0.0
 Identities = 267/463 (57%), Positives = 316/463 (68%), Gaps = 5/463 (1%)

Query: 1   METDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAA 60
           ++T  P+ +LIEAA++G E+  E+ A+NF +HAN+LVEVA LACS SNN++ V+ +R AA
Sbjct: 376 LDTTTPLKLLIEAAKAGREENFEEKAQNFQEHANRLVEVARLACSCSNNKETVEAIRMAA 435

Query: 61  SSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQVRVLTEAVDDITTIDDFLAV 120
           + + SL  QVINAARIL   P SK AQENM+ FK  W+ QVR LTEAVDDIT  DDFLAV
Sbjct: 436 AQVESLTPQVINAARILLHNPGSKAAQENMETFKNQWEDQVRRLTEAVDDITDTDDFLAV 495

Query: 121 SENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVAAEMDNYEPGIYTERVLE 180
           SE HILEDVNKCV+A+Q  D   L  TAG+I GR+ RV  V  AEMDN E  +YTERV E
Sbjct: 496 SEEHILEDVNKCVMAIQNADPQTLVATAGSIAGRANRVLLVAKAEMDNSEDPVYTERVKE 555

Query: 181 AIKVLREQVMPNFATRVEVAVDALSTTPPKEVDEN--EFIDASRLVYDGVREIRRAVLMN 238
           A+ +L   + P FA   EVAV+AL     K  +EN  EF+DA RLVYD VR IR+AVLMN
Sbjct: 556 AVDILSNTIPPMFAEAKEVAVNALDPGAAKSWEENNYEFLDAVRLVYDAVRPIRQAVLMN 615

Query: 239 RTDEELDPEDIELDDQYTTSEAATMPRSKELGVDEYPDISGITTAREAMRKMTEEDKQKI 298
           R+  EL P D E +       A   P                 T RE MR++  E+K KI
Sbjct: 616 RSPPEL-PTDSEFE--REDEPADPRPPPPVETEPPPRPPPPPETDREEMRRLPPEEKAKI 672

Query: 299 AQQVEFFRSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVIN 358
           A QV+ F +   K  REVAKWD  GNDII LAK MCMIMMEMTDFTRG+GPLKTTMDVIN
Sbjct: 673 AAQVQPFLAAAHKLHREVAKWDSKGNDIIALAKRMCMIMMEMTDFTRGKGPLKTTMDVIN 732

Query: 359 AAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQNIS 418
           AAKKI+EAG  + +L RQIA QC +S  K DLLAYL+RI LYC QL I SKVKA +    
Sbjct: 733 AAKKIAEAGEEVTRLARQIARQCTDSRIKTDLLAYLERIPLYCTQLKILSKVKATMLGSG 792

Query: 419 GELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQN 461
            EL VSGLDSA SLIQ A+NLM +VV TVK++Y ASTK    N
Sbjct: 793 NELSVSGLDSAESLIQNAQNLMQSVVQTVKAAYAASTKIRTDN 835

Length = 850
>gnl|CDD|216263 pfam01044, Vinculin, Vinculin family Back     alignment and domain information
>gnl|CDD|216263 pfam01044, Vinculin, Vinculin family Back     alignment and domain information
>gnl|CDD|184699 PRK14478, PRK14478, nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 994
KOG3681|consensus835 100.0
PF01044968 Vinculin: Vinculin family; InterPro: IPR006077 Vin 100.0
KOG3681|consensus835 100.0
PF01044968 Vinculin: Vinculin family; InterPro: IPR006077 Vin 100.0
PF05482552 Serendipity_A: Serendipity locus alpha protein (SR 98.03
PF05482552 Serendipity_A: Serendipity locus alpha protein (SR 97.99
PF01608152 I_LWEQ: I/LWEQ domain; InterPro: IPR002558 I/LWEQ 94.86
KOG4261|consensus1003 93.81
PF08913125 VBS: Vinculin Binding Site; InterPro: IPR015009 Vi 93.08
PF01608152 I_LWEQ: I/LWEQ domain; InterPro: IPR002558 I/LWEQ 91.8
PF08913125 VBS: Vinculin Binding Site; InterPro: IPR015009 Vi 87.84
smart00307200 ILWEQ I/LWEQ domain. Thought to possess an F-actin 85.23
smart00307200 ILWEQ I/LWEQ domain. Thought to possess an F-actin 83.73
KOG4261|consensus1003 80.31
>KOG3681|consensus Back     alignment and domain information 
Probab=100.00  E-value=8.2e-100  Score=882.80  Aligned_cols=703  Identities=43%  Similarity=0.562  Sum_probs=530.5

Q ss_pred             ChhHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHhHHHHHHH
Q psy5460          49 NEDGVKMVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQVRVLTEAVDDITTIDDFLAVSENHILED  128 (994)
Q Consensus        49 d~~~vk~i~~aa~qLe~L~PQVi~Aar~L~~~P~sk~A~Enle~l~~~W~~~v~~L~~avDditd~~dFL~vSe~~I~~d  128 (994)
                      |+.....+-.|...++..+.-+..+++.+..+|.|-..+.+|=.=-+..-..|.+|.-+.|.+- +.-.|. +...++..
T Consensus        67 ~~~l~~em~~A~~~V~~~~~~m~~aa~~~~~Dp~s~~~R~~~i~aaR~LLsavtrlLllaD~~d-V~~ii~-~~~~V~~~  144 (835)
T KOG3681|consen   67 DQILKQEMPAALEEVRKAGDLMKQAAREFDDDPCSVPKRGNLIRAARGLLSAVTRLLLLADMVD-VKKIIR-SCKKVLET  144 (835)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHH-HHHHHHHH
Confidence            6667778888889999999999999999999999999999999888888899999998887654 333332 22233333


Q ss_pred             HHHHHHHHhcCChhHHHhHHHHHHHHH-hHHHHHHHhhhhcCCCccchHHHHHHHHHHHHhhchhhHhHHHHHHHHhhcC
Q psy5460         129 VNKCVLALQEGDADILDRTAGAIRGRS-ARVANVVAAEMDNYEPGIYTERVLEAIKVLREQVMPNFATRVEVAVDALSTT  207 (994)
Q Consensus       129 ~~~c~~Ai~~~d~~~~~~~a~~I~gra-~RV~~Vak~e~dnsedp~y~~~V~~a~~~L~~~i~p~v~~av~~a~~~l~~n  207 (994)
                      +...+   .-+.-+.|++.-..+-+-. +--.++.+|.-|- -||..|..+-.+-..|+. ..|++--+-+.++    ..
T Consensus       145 l~~le---~~~t~~dlv~~~k~lg~~m~~l~~~~~~RqqeL-k~~~~rd~laaar~~lk~-~~p~L~task~~l----rh  215 (835)
T KOG3681|consen  145 LEVLE---NVNTMQDLVQIFKQLGPEMVKLAHMAGKRQQEL-KDPKHRDQLAAARAVLKK-LAPMLLTASKTCL----RH  215 (835)
T ss_pred             HHHHH---hhccHHHHHHHHHHHhHHHHHHHHHHHHHHHhh-cChhhHHHHHHHHHHHHH-HhHHHHHHHHHHH----cC
Confidence            33322   2344466655554444433 2233445555554 578999999999999985 5588876666665    66


Q ss_pred             CCCchhhhHHHHhHHHHHHHHHHHHHHHhccCCCCCCCCCCccccccccccccccCCCCccCCCCCCCCccCCCchhHHh
Q psy5460         208 PPKEVDENEFIDASRLVYDGVREIRRAVLMNRTDEELDPEDIELDDQYTTSEAATMPRSKELGVDEYPDISGITTAREAM  287 (994)
Q Consensus       208 p~~~~~~~~f~da~~~l~~~V~~vr~av~~~~~p~el~~~~s~~~~~~~~~~a~~~~~~s~~~~~~~~~~~~~~~~~~~~  287 (994)
                      |+......+=-.....+.+++..|-.++.... |.+-   .+++               +           +.  +-.+.
T Consensus       216 p~~~~a~~NRd~v~~~m~~aln~I~~v~q~~~-~~~~---~~~~---------------~-----------~~--~~~l~  263 (835)
T KOG3681|consen  216 PNCESAKKNRDYVFDQMSDALNEIIRVLQLTS-PDED---TSES---------------S-----------GS--AGKLA  263 (835)
T ss_pred             ccHHHHHhhhhHHHHHHHHHHHHHHHHHhcCC-CCCC---cchh---------------c-----------cc--hhHHH
Confidence            77665555545567888888888888775432 2210   0010               0           00  00000


Q ss_pred             hcCChHHHHHHHHHHHHHHhhhhhhHHHhhhhccCCchHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHhh
Q psy5460         288 RKMTEEDKQKIAQQVEFFRSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKISEAG  367 (994)
Q Consensus       288 ~~lp~~e~~ki~~~~~~~~~~a~~l~~E~~kW~~~~N~IV~~Ak~Ma~~m~~M~~ftrg~G~l~tk~dli~~Ak~iae~~  367 (994)
                      ..+... +..|...+..++                                  +.--|+-|. +.-+.+|.-|-.|++.+
T Consensus       264 ~a~~~~-~~~~~~~~l~~~----------------------------------~~~~r~~le-~~le~Iis~aa~~aDs~  307 (835)
T KOG3681|consen  264 SALIDF-KKNIAIDPLTNP----------------------------------EARSRPSLE-VRLEQIISGAALMADSC  307 (835)
T ss_pred             HHHhHH-HHHHHhhhhhch----------------------------------hhccCchHH-HHHHHHHHHHHHHHHHH
Confidence            000000 111111122221                                  111111111 12223344444444333


Q ss_pred             hhHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccc-ccccchhccCCchHHHHHHHHHHHHHHHHH
Q psy5460         368 TNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQN-ISGELIVSGLDSATSLIQAAKNLMNAVVLT  446 (994)
Q Consensus       368 ~~l~~lar~iA~~c~D~~~k~~LL~~~e~I~~~~~QL~i~s~vKa~~~~-~g~e~~~s~~~~~~~lI~~AknLm~~V~~t  446 (994)
                      -             .|.| |..+.+.|.   .+.++|+-+-   ...++ .|.      .+..+.+-....++.      
T Consensus       308 ~-------------~d~r-reri~a~~~---al~q~l~d~l---~E~~~~~~~------k~~~~~l~~ai~~l~------  355 (835)
T KOG3681|consen  308 C-------------RDLR-RERIVAECN---ALRQALQDLL---SEYQSNAGR------KGRSPALELAIDQLT------  355 (835)
T ss_pred             h-------------HHHH-HHHHhhhhH---HHHHHHHHHH---HHHHHHhhc------cccChhHHHHHHHHH------
Confidence            2             2222 444555444   3334433220   01111 111      122233444444444      


Q ss_pred             HHHHHHHhccccchhhhhhhhhHHHHhhhhhcccccccchhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5460         447 VKSSYVASTKYPRQNQVAKKSHTAIVDRILLVFSFMETDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEVANLACS  526 (994)
Q Consensus       447 v~~~~~as~K~~~~~~l~~~~~~avv~~v~~~dsF~dt~~PL~~L~~Aa~~Gd~e~~~~~a~~F~eha~~l~evA~lv~~  526 (994)
                                 ++..+|++.+++++++||+  |+|+|+++||..|++|++.|++++|.+|+.+|++|+++|++||+|+|+
T Consensus       356 -----------kkl~dLrrqLr~a~~d~iS--d~fldt~tpllll~eaa~~G~ee~~~eya~~f~eha~~lvevarl~~~  422 (835)
T KOG3681|consen  356 -----------KKLKDLKRQLRKAATDHVS--DSFLDTTTPLLLLIEAAKAGNEEEVKEYAANFREHANKLVEVARLACS  422 (835)
T ss_pred             -----------HHHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                       6788999999999999999  779999999999999999999999999999999999999999999999


Q ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHhhhhHHHHHhhhhhhHHHhhhhHHHHHHHHHHHHHHHHh
Q psy5460         527 MSNNEDGVKMVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQSQVAQENMDVFKEAWDSQVRVLTEA  606 (994)
Q Consensus       527 ~s~ne~~~~~i~~aa~~le~L~PQVI~Aar~l~~~P~sk~A~en~e~~~~~w~~~~~~~~e~~~~~k~~W~~~v~~L~~~  606 (994)
                      +|+|+++++.+++++.|++.||||||+||++|+.||.||+|+|||+.                  ||++|.++|+.|+.+
T Consensus       423 is~n~~~v~~v~~sa~ql~~L~Pqvi~Aa~~l~~~P~sk~A~enme~------------------~k~~w~~~V~~lt~a  484 (835)
T KOG3681|consen  423 ISNNEEGVKIVQHSAAQLESLCPQVINAARILAARPGSKAAQENMET------------------YKNQWEDQVRVLTTA  484 (835)
T ss_pred             cccccchhHHHHHHHHHHHhcchHHHHHHHHHHhCccchhHHHHHHH------------------HHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999998886                  667899999999999


Q ss_pred             hhhhcChHHHHHhhHHHHHHHHHHHHHHHhcCChhhhhhhhhHHhhhhhHHHHHHHHhhhcCCCCcchHHHHHHHHHHHH
Q psy5460         607 VDDITTIDDFLAVSENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVAAEMDNYEPGIYTERVLEAIKVLRE  686 (994)
Q Consensus       607 vDdit~~~dFl~vse~~i~~d~~~c~~Ai~~~~~~~l~~~a~~I~~ra~RV~~va~~e~~n~edp~~~~~v~~av~~l~~  686 (994)
                      ||++|+++||+++||.||+.|+++|..|+..++|+.+++++|.|+||++||+.|+++||+|+|||.|+++|+++++.|.+
T Consensus       485 vd~~t~~~dfl~vSE~hi~ed~~kc~~ai~~~~~~~l~~~a~~i~~ra~rv~~v~~aE~dn~e~~~yte~v~~a~~~l~~  564 (835)
T KOG3681|consen  485 VDDITDIDDFLAVSEEHILEDVNKCGVAIQSIDPQMLDRTAGAIRGRANRVLHVVKAEMDNYEPPVYTERVKEAVDVLSE  564 (835)
T ss_pred             hcccCCchhHHHHHHHHHHHhhhhhhhhhccccchhhhhhhhhhhhhhhHHHHHHHHHHhccCCchhhHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             HHH-----------------------------------HHhh----------------------------cCCHHHHHHH
Q psy5460         687 QGM-----------------------------------EAMR----------------------------KMTEEDKQKI  703 (994)
Q Consensus       687 ~~~-----------------------------------ea~~----------------------------~l~~e~k~kI  703 (994)
                      +++                                   ++++                            .|.. .++||
T Consensus       565 ~v~~~~~d~~~~a~e~~d~~~~~~~~~n~~i~a~~~V~d~i~~~~~~~~~~~~E~l~~~~~~~t~~~~~~~m~~-~~eki  643 (835)
T KOG3681|consen  565 TVMPQFGDAVSVAVEILDPDKAFRGEENRFLDASRLVYDAIRRTPEDLPDPDLEALELARSKPTPETDREKMRK-PQEKI  643 (835)
T ss_pred             ccchhHHHHHHHHHHhcCchhcccchhhHHhhhhHHHHhcccCCCCCCChHhHhhhhccccCCCchhhhhhccC-CHhhH
Confidence            531                                   2222                            0111 13499


Q ss_pred             HHhhhhhhhhhhhhHHHhhhhcC-CCchHHHHHHHHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHHhhhHHHHHHHHH
Q psy5460         704 AQQVEFFRSEKLKFDREVAKWDD-TGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKISEAGTNLDKLTRQI  782 (994)
Q Consensus       704 a~~~~~~~~~~~~l~~E~~kWd~-~~NdIv~~ak~Ma~~m~~m~~ftrg~g~lktt~dli~~Ak~iae~~~~l~~~a~~~  782 (994)
                      +++++.|..++++||+|++|||| +|||||.+||+||+|||+||+||||+||||||+|||++||+||++|+++++++|+|
T Consensus       644 a~~~~~~~~~~s~ld~Ev~KWdd~~~NDII~~AK~M~~im~~Mt~FTRG~GPlKtt~DlI~aAk~iAeag~~m~rlarei  723 (835)
T KOG3681|consen  644 AKQGLPFKLLTSKLDAEVEKWDDKSGNDIIALAKNMCSIMYEMTDFTRGDGPLKTTSDLISAAKKIAEAGSRMTRLAREI  723 (835)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            99999999999999999999999 59999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCcchHHHHHHHHHhhhhhhhHhhhhhhccccccCCchhhHHHHHHHHHHHhhhhhhhhhhhhhhccccccccccc
Q psy5460         783 ADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQKPTNKDLLAYLQRIALYCHQLNITSKVKADVQNISGELIVSG  862 (994)
Q Consensus       783 a~~c~D~~~k~~Ll~~~e~i~t~~~QLki~s~vka~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  862 (994)
                      |+||||+++|++||+||+|||+|||||||+|||||+++                                +++|++    
T Consensus       724 a~qcpDs~~k~dLLa~lerIpl~c~QLqI~Skvka~~~--------------------------------~~~~~~----  767 (835)
T KOG3681|consen  724 AKQCPDSAIKTDLLAYLERIPLYCHQLQICSKVKATVK--------------------------------NLGGEL----  767 (835)
T ss_pred             HHhCCChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh--------------------------------hccchh----
Confidence            99999999999999999999999999998888876654                                445554    


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhHhhcccccccccchhhhhHHHHHHHhhhHHHHHHhhccccccccCCCCCCCCcc
Q psy5460         863 LDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVALDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVASP  942 (994)
Q Consensus       863 ~~~~~~li~~a~nlm~~v~~~v~~~~~as~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  942 (994)
                           +|||.|||||++|++||+++|+||+||.+..++                                       .++
T Consensus       768 -----slIq~tknlmn~vvqtvk~syv~stk~~~~~~~---------------------------------------~v~  803 (835)
T KOG3681|consen  768 -----SLIQATKNLMNEVVQTVKASYVAATKLQQSVKG---------------------------------------TVR  803 (835)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------------------------------------ccc
Confidence                 677777777777777777777777777664221                                       111


Q ss_pred             eeEeeccCCCCCCCCCCCChhHHHHHhhhccccccCChhhhhhhcc
Q psy5460         943 IVVWKMKAPEKKPLVRPEKPEEVRAKVRKGSQKKVQNPIKALSEFQ  988 (994)
Q Consensus       943 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  988 (994)
                      ..              +++|++..++||++|+|++++|++++++|+
T Consensus       804 ~~--------------~~~~e~~~a~iR~~s~k~~~~~v~~~~~~~  835 (835)
T KOG3681|consen  804 NG--------------REKAEDASAKIRRDSAKKTLQPVQALSEFQ  835 (835)
T ss_pred             cc--------------ccchhhhhhhHhhhhhhccccHHHhccccC
Confidence            11              899999999999999999999999999996

>PF01044 Vinculin: Vinculin family; InterPro: IPR006077 Vinculin is a eukaryotic protein that seems to be involved in the attachment of the actin-based microfilaments to the plasma membrane Back     alignment and domain information
>KOG3681|consensus Back     alignment and domain information
>PF01044 Vinculin: Vinculin family; InterPro: IPR006077 Vinculin is a eukaryotic protein that seems to be involved in the attachment of the actin-based microfilaments to the plasma membrane Back     alignment and domain information
>PF05482 Serendipity_A: Serendipity locus alpha protein (SRY-A); InterPro: IPR008837 The Drosophila serendipity alpha (sry alpha) gene is specifically transcribed at the blastoderm stage, from nuclear cycle 11 to the onset of gastrulation, in all somatic nuclei [] Back     alignment and domain information
>PF05482 Serendipity_A: Serendipity locus alpha protein (SRY-A); InterPro: IPR008837 The Drosophila serendipity alpha (sry alpha) gene is specifically transcribed at the blastoderm stage, from nuclear cycle 11 to the onset of gastrulation, in all somatic nuclei [] Back     alignment and domain information
>PF01608 I_LWEQ: I/LWEQ domain; InterPro: IPR002558 I/LWEQ domains bind to actin Back     alignment and domain information
>KOG4261|consensus Back     alignment and domain information
>PF08913 VBS: Vinculin Binding Site; InterPro: IPR015009 Vinculin binding sites are predominantly found in talin and talin-like molecules, enabling binding of vinculin to talin, stabilising integrin-mediated cell-matrix junctions Back     alignment and domain information
>PF01608 I_LWEQ: I/LWEQ domain; InterPro: IPR002558 I/LWEQ domains bind to actin Back     alignment and domain information
>PF08913 VBS: Vinculin Binding Site; InterPro: IPR015009 Vinculin binding sites are predominantly found in talin and talin-like molecules, enabling binding of vinculin to talin, stabilising integrin-mediated cell-matrix junctions Back     alignment and domain information
>smart00307 ILWEQ I/LWEQ domain Back     alignment and domain information
>smart00307 ILWEQ I/LWEQ domain Back     alignment and domain information
>KOG4261|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query994
4igg_A832 Full-Length Human Alpha-Catenin Crystal Structure L 1e-178
4igg_A832 Full-Length Human Alpha-Catenin Crystal Structure L 1e-120
1l7c_A269 Alpha-Catenin Fragment, Residues 385-651 Length = 2 8e-96
1l7c_A269 Alpha-Catenin Fragment, Residues 385-651 Length = 2 3e-74
1h6g_A256 Alpha-Catenin M-Domain Length = 256 4e-95
1h6g_A256 Alpha-Catenin M-Domain Length = 256 2e-74
1st6_A1069 Crystal Structure Of A Cytoskeletal Protein Length 3e-26
1st6_A1069 Crystal Structure Of A Cytoskeletal Protein Length 1e-11
3myi_A172 Human Metavinculin Tail Domain Length = 172 2e-15
3myi_A172 Human Metavinculin Tail Domain Length = 172 5e-13
3vf0_A283 Raver1 In Complex With Metavinculin L954 Deletion M 3e-15
3vf0_A283 Raver1 In Complex With Metavinculin L954 Deletion M 2e-12
3h2u_A188 Human Raver1 Rrm1, Rrm2, And Rrm3 Domains In Comple 2e-14
3h2u_A188 Human Raver1 Rrm1, Rrm2, And Rrm3 Domains In Comple 8e-12
1rke_B185 Human Vinculin Head (1-258) In Complex With Human V 2e-14
1rke_B185 Human Vinculin Head (1-258) In Complex With Human V 8e-12
1tr2_A1066 Crystal Structure Of Human Full-Length Vinculin (Re 2e-10
1tr2_A1066 Crystal Structure Of Human Full-Length Vinculin (Re 3e-09
1tr2_A1066 Crystal Structure Of Human Full-Length Vinculin (Re 7e-08
1tr2_A1066 Crystal Structure Of Human Full-Length Vinculin (Re 4e-07
1qkr_A188 Crystal Structure Of The Vinculin Tail And A Pathwa 6e-09
1qkr_A188 Crystal Structure Of The Vinculin Tail And A Pathwa 1e-06
>pdb|4IGG|A Chain A, Full-Length Human Alpha-Catenin Crystal Structure Length = 832 Back     alignment and structure 
Iteration: 1

 Score =  623 bits (1606), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 308/464 (66%), Positives = 373/464 (80%), Gaps = 8/464 (1%)
Query: 1   METDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAA 60
           +ET++P+LVLIEAA++GNEKEV++ A+ F +HANKL+EVANLACS+SNNE+GVK+VR +A
Sbjct: 314 LETNVPLLVLIEAAKNGNEKEVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRMSA 373
Query: 61  SSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQVRVLTEAVDDITTIDDFLAV 120
           S + +L  QVINAA  LAA+P+SK+AQENMD+FKE W+ QVRVLT+AVDDIT+IDDFLAV
Sbjct: 374 SQLEALCPQVINAALALAAKPQSKLAQENMDLFKEQWEKQVRVLTDAVDDITSIDDFLAV 433
Query: 121 SENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVAAEMDNYEPGIYTERVLE 180
           SENHILEDVNKCV+ALQE D D LDRTAGAIRGR+ARV +VV +EMDNYEPG+YTE+VLE
Sbjct: 434 SENHILEDVNKCVIALQEKDVDGLDRTAGAIRGRAARVIHVVTSEMDNYEPGVYTEKVLE 493
Query: 181 AIKVLREQVMPNFATRVEVAVDALSTTPPKEVDENEFIDASRLVYDGVREIRRAVLMNRT 240
           A K+L   VMP F  +VE AV+ALS+ P + +DENEFIDASRLVYDG+R+IR+AVLM RT
Sbjct: 494 ATKLLSNTVMPRFTEQVEAAVEALSSDPAQPMDENEFIDASRLVYDGIRDIRKAVLMIRT 553
Query: 241 XXXXXXXXXXXXXQYTTSEAATMPRSKELGVDEYPDISGITTAREAMRKMTEEDKQKIAQ 300
                            S  +      +L       I+G  +AR  M ++ +E K KIA+
Sbjct: 554 PEELDDSDFETEDFDVRSRTSVQTEDDQL-------IAG-QSARAIMAQLPQEQKAKIAE 605
Query: 301 QVEFFRSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAA 360
           QV  F+ EK K D EV+KWDD+GNDIIVLAK MCMIMMEMTDFTRG+GPLK T DVI+AA
Sbjct: 606 QVASFQEEKSKLDAEVSKWDDSGNDIIVLAKQMCMIMMEMTDFTRGKGPLKNTSDVISAA 665
Query: 361 KKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQNISGE 420
           KKI+EAG+ +DKL R IAD CP+S+ K+DLLAYLQRIALYCHQLNI SKVKA+VQN+ GE
Sbjct: 666 KKIAEAGSRMDKLGRTIADHCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGGE 725
Query: 421 LIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVA 464
           L+VSG+DSA SLIQAAKNLMNAVV TVK+SYVASTKY +   +A
Sbjct: 726 LVVSGVDSAMSLIQAAKNLMNAVVQTVKASYVASTKYQKSQGMA 769
>pdb|4IGG|A Chain A, Full-Length Human Alpha-Catenin Crystal Structure Length = 832 Back     alignment and structure
>pdb|1L7C|A Chain A, Alpha-Catenin Fragment, Residues 385-651 Length = 269 Back     alignment and structure
>pdb|1L7C|A Chain A, Alpha-Catenin Fragment, Residues 385-651 Length = 269 Back     alignment and structure
>pdb|1H6G|A Chain A, Alpha-Catenin M-Domain Length = 256 Back     alignment and structure
>pdb|1H6G|A Chain A, Alpha-Catenin M-Domain Length = 256 Back     alignment and structure
>pdb|1ST6|A Chain A, Crystal Structure Of A Cytoskeletal Protein Length = 1069 Back     alignment and structure
>pdb|1ST6|A Chain A, Crystal Structure Of A Cytoskeletal Protein Length = 1069 Back     alignment and structure
>pdb|3MYI|A Chain A, Human Metavinculin Tail Domain Length = 172 Back     alignment and structure
>pdb|3MYI|A Chain A, Human Metavinculin Tail Domain Length = 172 Back     alignment and structure
>pdb|3VF0|A Chain A, Raver1 In Complex With Metavinculin L954 Deletion Mutant Length = 283 Back     alignment and structure
>pdb|3VF0|A Chain A, Raver1 In Complex With Metavinculin L954 Deletion Mutant Length = 283 Back     alignment and structure
>pdb|3H2U|A Chain A, Human Raver1 Rrm1, Rrm2, And Rrm3 Domains In Complex With Human Vinculin Tail Domain Vt Length = 188 Back     alignment and structure
>pdb|3H2U|A Chain A, Human Raver1 Rrm1, Rrm2, And Rrm3 Domains In Complex With Human Vinculin Tail Domain Vt Length = 188 Back     alignment and structure
>pdb|1RKE|B Chain B, Human Vinculin Head (1-258) In Complex With Human Vinculin Tail (879-1066) Length = 185 Back     alignment and structure
>pdb|1RKE|B Chain B, Human Vinculin Head (1-258) In Complex With Human Vinculin Tail (879-1066) Length = 185 Back     alignment and structure
>pdb|1TR2|A Chain A, Crystal Structure Of Human Full-Length Vinculin (Residues 1- 1066) Length = 1066 Back     alignment and structure
>pdb|1TR2|A Chain A, Crystal Structure Of Human Full-Length Vinculin (Residues 1- 1066) Length = 1066 Back     alignment and structure
>pdb|1TR2|A Chain A, Crystal Structure Of Human Full-Length Vinculin (Residues 1- 1066) Length = 1066 Back     alignment and structure
>pdb|1TR2|A Chain A, Crystal Structure Of Human Full-Length Vinculin (Residues 1- 1066) Length = 1066 Back     alignment and structure
>pdb|1QKR|A Chain A, Crystal Structure Of The Vinculin Tail And A Pathway For Activation Length = 188 Back     alignment and structure
>pdb|1QKR|A Chain A, Crystal Structure Of The Vinculin Tail And A Pathway For Activation Length = 188 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query994
1h6g_A256 Alpha-1 catenin; adhesion modulation, cytoskeleton 2e-71
1h6g_A256 Alpha-1 catenin; adhesion modulation, cytoskeleton 6e-51
1tr2_A1066 Vinculin isoform 1; actin-binding, cell adhesion; 1e-67
1tr2_A1066 Vinculin isoform 1; actin-binding, cell adhesion; 3e-36
1qkr_A188 Vinculin, tail domain; actin cytoskeleton, cell ad 1e-49
1qkr_A188 Vinculin, tail domain; actin cytoskeleton, cell ad 5e-44
3vf0_A283 Vinculin, metavinculin; cytoskeletal F-actin bindi 2e-46
3vf0_A283 Vinculin, metavinculin; cytoskeletal F-actin bindi 1e-38
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-12
1u89_A139 Talin 1, talin; 4-helix bundle, LEFT-handed, struc 4e-06
1u89_A139 Talin 1, talin; 4-helix bundle, LEFT-handed, struc 4e-06
>1h6g_A Alpha-1 catenin; adhesion modulation, cytoskeleton; 2.2A {Homo sapiens} SCOP: a.24.9.1 a.24.9.1 PDB: 1l7c_A Length = 256 Back     alignment and structure
 Score =  236 bits (603), Expect = 2e-71
 Identities = 170/237 (71%), Positives = 209/237 (88%)

Query: 1   METDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAA 60
           +ET++P+LVLIEAA++GNEKEV++ A+ F +HANKL+EVANLACS+SNNE+GVK+VR +A
Sbjct: 19  LETNVPLLVLIEAAKNGNEKEVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRMSA 78

Query: 61  SSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQVRVLTEAVDDITTIDDFLAV 120
           S + +L  QVINAA  LAA+P+SK+AQENMD+FKE W+ QVRVLT+AVDDIT+IDDFLAV
Sbjct: 79  SQLEALCPQVINAALALAAKPQSKLAQENMDLFKEQWEKQVRVLTDAVDDITSIDDFLAV 138

Query: 121 SENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVAAEMDNYEPGIYTERVLE 180
           SENHILEDVNKCV+ALQE D D LDRTAGAIRGR+ARV +VV +EMDNYEPG+YTE+VLE
Sbjct: 139 SENHILEDVNKCVIALQEKDVDGLDRTAGAIRGRAARVIHVVTSEMDNYEPGVYTEKVLE 198

Query: 181 AIKVLREQVMPNFATRVEVAVDALSTTPPKEVDENEFIDASRLVYDGVREIRRAVLM 237
           A K+L   VMP F  +VE AV+ALS+ P + +DENEFIDASRLVYDG+R+IR+AVLM
Sbjct: 199 ATKLLSNTVMPRFTEQVEAAVEALSSDPAQPMDENEFIDASRLVYDGIRDIRKAVLM 255
>1h6g_A Alpha-1 catenin; adhesion modulation, cytoskeleton; 2.2A {Homo sapiens} SCOP: a.24.9.1 a.24.9.1 PDB: 1l7c_A Length = 256 Back     alignment and structure
>1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A {Homo sapiens} PDB: 1st6_A Length = 1066 Back     alignment and structure
>1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A {Homo sapiens} PDB: 1st6_A Length = 1066 Back     alignment and structure
>1qkr_A Vinculin, tail domain; actin cytoskeleton, cell adhesion, helical bundle, lipid binding; 1.8A {Gallus gallus} SCOP: a.24.9.1 PDB: 3h2u_A 3h2v_A 1rke_B 3myi_A Length = 188 Back     alignment and structure
>1qkr_A Vinculin, tail domain; actin cytoskeleton, cell adhesion, helical bundle, lipid binding; 1.8A {Gallus gallus} SCOP: a.24.9.1 PDB: 3h2u_A 3h2v_A 1rke_B 3myi_A Length = 188 Back     alignment and structure
>3vf0_A Vinculin, metavinculin; cytoskeletal F-actin binding protein, CEL adhesion-protein binding complex; HET: EPE; 2.54A {Homo sapiens} Length = 283 Back     alignment and structure
>3vf0_A Vinculin, metavinculin; cytoskeletal F-actin binding protein, CEL adhesion-protein binding complex; HET: EPE; 2.54A {Homo sapiens} Length = 283 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1u89_A Talin 1, talin; 4-helix bundle, LEFT-handed, structural protein; NMR {Mus musculus} SCOP: a.216.1.1 Length = 139 Back     alignment and structure
>1u89_A Talin 1, talin; 4-helix bundle, LEFT-handed, structural protein; NMR {Mus musculus} SCOP: a.216.1.1 Length = 139 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query994
4igg_A832 Catenin alpha-1; asymmetric dimer, adherens juncti 100.0
4igg_A832 Catenin alpha-1; asymmetric dimer, adherens juncti 100.0
1tr2_A1066 Vinculin isoform 1; actin-binding, cell adhesion; 100.0
1tr2_A1066 Vinculin isoform 1; actin-binding, cell adhesion; 100.0
1h6g_A256 Alpha-1 catenin; adhesion modulation, cytoskeleton 100.0
1qkr_A188 Vinculin, tail domain; actin cytoskeleton, cell ad 100.0
3vf0_A283 Vinculin, metavinculin; cytoskeletal F-actin bindi 100.0
1h6g_A256 Alpha-1 catenin; adhesion modulation, cytoskeleton 100.0
3vf0_A283 Vinculin, metavinculin; cytoskeletal F-actin bindi 100.0
1qkr_A188 Vinculin, tail domain; actin cytoskeleton, cell ad 100.0
2l7a_A131 Talin-1; vinculin, bundle, focal adhesion, integri 99.01
1dow_A205 Alpha-catenin; four-helix bundle, cell adhesion; 1 98.21
3dyj_A332 Talin-1; helix bundles, cytoskeletal protein, inte 98.01
3rf3_A258 Vinculin, metavinculin; alpha-helix bundle domain, 98.0
3rf3_A258 Vinculin, metavinculin; alpha-helix bundle domain, 97.68
3dyj_A332 Talin-1; helix bundles, cytoskeletal protein, inte 97.35
2x0c_A309 Talin-1; cytoskeleton, cell membrane, actin, synem 97.27
1sj8_A308 Talin 1; structural protein; 2.60A {Mus musculus} 97.07
2l7a_A131 Talin-1; vinculin, bundle, focal adhesion, integri 96.8
1dow_A205 Alpha-catenin; four-helix bundle, cell adhesion; 1 96.69
1sj8_A308 Talin 1; structural protein; 2.60A {Mus musculus} 96.64
2x0c_A309 Talin-1; cytoskeleton, cell membrane, actin, synem 96.47
1u89_A139 Talin 1, talin; 4-helix bundle, LEFT-handed, struc 96.05
3fyq_A199 CG6831-PA (talin); 5-helix bundle, cell adhesion; 94.16
2l10_A158 Talin-1; helical bundle, cytoskeleton, focal adhes 92.51
4f7g_B216 Talin-1; alpha-helix bundle, integrin activation, 91.94
1u89_A139 Talin 1, talin; 4-helix bundle, LEFT-handed, struc 90.67
2l7n_A168 Talin-1; integrin, bundle, focal adhesion, structu 90.57
2b0h_A137 Talin-1; vinculin, helical bundle, VBS, structural 90.16
2kvp_A165 Talin-1; VBS, vinculin, helical bundle, cytoplasm, 89.6
3fyq_A199 CG6831-PA (talin); 5-helix bundle, cell adhesion; 89.3
2l10_A158 Talin-1; helical bundle, cytoskeleton, focal adhes 89.1
2jsw_A189 Talin-1; C-terminal actin binding site, ABS3, that 84.15
2jsw_A189 Talin-1; C-terminal actin binding site, ABS3, that 83.11
>4igg_A Catenin alpha-1; asymmetric dimer, adherens junctions, F-actin binding, cell; 3.66A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=7.9e-112  Score=1031.57  Aligned_cols=731  Identities=47%  Similarity=0.654  Sum_probs=556.1

Q ss_pred             ChhHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHhHHHHHHH
Q psy5460          49 NEDGVKMVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQVRVLTEAVDDITTIDDFLAVSENHILED  128 (994)
Q Consensus        49 d~~~vk~i~~aa~qLe~L~PQVi~Aar~L~~~P~sk~A~Enle~l~~~W~~~v~~L~~avDditd~~dFL~vSe~~I~~d  128 (994)
                      |+.+...+-.|...++.=+.-+..++..|..+|.|...++.|=.=-+.--..|.+|.-+.|.+. +.-        |...
T Consensus         2 ~~~Lk~eM~~A~~~v~~ag~~l~~aa~~l~~DP~s~~~R~~lV~aAR~LLs~vTrLLllaD~~~-Vrk--------Ii~~   72 (832)
T 4igg_A            2 SQFLKEELVAAVEDVRKQGDLMKAAAGEFADDPCSSVKRGNMVRAARALLSAVTRLLILADMAD-VYK--------LLVQ   72 (832)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--------HHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--------HHHH
Confidence            5666777888888999999999999999999999999999887777777778888887777654 333        3333


Q ss_pred             HHHHHH---HHhc-CChhHHHhHHHHHHHHHhHHHHHHHhhhhcCCCccchHHHHHHHHHHHHhhchhhHhHHHHHHHHh
Q psy5460         129 VNKCVL---ALQE-GDADILDRTAGAIRGRSARVANVVAAEMDNYEPGIYTERVLEAIKVLREQVMPNFATRVEVAVDAL  204 (994)
Q Consensus       129 ~~~c~~---Ai~~-~d~~~~~~~a~~I~gra~RV~~Vak~e~dnsedp~y~~~V~~a~~~L~~~i~p~v~~av~~a~~~l  204 (994)
                      .++|..   .+.. .+.+.|+..-..+-.....+...+.+--.---||.+|+.+..+-..|+..+ ||+.-+.+.++   
T Consensus        73 ~~~Vl~~L~~le~v~s~~eLv~~f~~f~~~m~eL~~lt~~Rq~dLk~~~~R~~L~aAr~~Lk~~s-pmLlta~Kt~l---  148 (832)
T 4igg_A           73 LKVVEDGILKLRNAGNEQDLGIQYKALKPEVDKLNIMAAKRQQELKDVGHRDQMAAARGILQKNV-PILYTASQACL---  148 (832)
T ss_dssp             HHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc---
Confidence            333333   3333 355888888888888877777777666666688999999999999998655 88775655554   


Q ss_pred             hcCCCCchhhhHHHHhHHHHHHHHHHHHHHHhccCCCCCCCCCCccccccccccccccCCCCccCCCCCCCCccCCCchh
Q psy5460         205 STTPPKEVDENEFIDASRLVYDGVREIRRAVLMNRTDEELDPEDIELDDQYTTSEAATMPRSKELGVDEYPDISGITTAR  284 (994)
Q Consensus       205 ~~np~~~~~~~~f~da~~~l~~~V~~vr~av~~~~~p~el~~~~s~~~~~~~~~~a~~~~~~s~~~~~~~~~~~~~~~~~  284 (994)
                       .+|..+.+..+=......+.+++..|-.++.... |++-.   +++               .         ..|.    
T Consensus       149 -rhp~~~~A~~nRd~v~~qm~~al~~Ii~vlq~~~-~~e~~---~~~---------------~---------~~g~----  195 (832)
T 4igg_A          149 -QHPDVAAYKANRDLIYKQLQQAVTGISNAAQATA-SDDAS---QHQ---------------G---------GGGG----  195 (832)
T ss_dssp             -HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCS-CSTTT---TCC---------------S---------SCSC----
T ss_pred             -CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCccc---ccc---------------c---------chHH----
Confidence             5788877777666778889999999988774322 22100   000               0         0000    


Q ss_pred             HHhhcCChHHHHHHHHHHHHHHhhhhhhHHHhhhhccCCchHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Q psy5460         285 EAMRKMTEEDKQKIAQQVEFFRSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKIS  364 (994)
Q Consensus       285 ~~~~~lp~~e~~ki~~~~~~~~~~a~~l~~E~~kW~~~~N~IV~~Ak~Ma~~m~~M~~ftrg~G~l~tk~dli~~Ak~ia  364 (994)
                                  .+......|       +.-          |            .|.-.+-+++  .....|-...+   
T Consensus       196 ------------~l~~al~~~-------~~~----------i------------~~~p~~~~e~--~~r~~L~~~Le---  229 (832)
T 4igg_A          196 ------------ELAYALNNF-------DKQ----------I------------IVDPLSFSEE--RFRPSLEERLE---  229 (832)
T ss_dssp             ------------HHHHHHHHH-------HHH----------H------------HSCCCSSCCS--SHHHHHHHHHH---
T ss_pred             ------------HHHHHHHHH-------HHH----------H------------hcCccccccc--hhhHHHHHHHH---
Confidence                        111111112       110          1            0100011111  12223333323   


Q ss_pred             HhhhhHHHHHHHHhh-hCCCchhHHHHHHHHHHHHHHHHHhhhhhhcccccccccccchhccCCchHHHHHHHHHHHHHH
Q psy5460         365 EAGTNLDKLTRQIAD-QCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAV  443 (994)
Q Consensus       365 e~~~~l~~lar~iA~-~c~D~~~k~~LL~~~e~I~~~~~QL~i~s~vKa~~~~~g~e~~~s~~~~~~~lI~~AknLm~~V  443 (994)
                          .+..-+..|++ .|+.+..|..|+.+|+++...-++|  ++   .-+.+.|.     + +..+.+-....+|.   
T Consensus       230 ----~iv~~a~~~aDs~~t~~~~Re~Iv~~C~~vrq~L~dL--l~---~~~~~~g~-----~-~~s~~l~~ai~~l~---  291 (832)
T 4igg_A          230 ----SIISGAALMADSSCTRDDRRERIVAECNAVRQALQDL--LS---EYMGNAGR-----K-ERSDALNSAIDKMT---  291 (832)
T ss_dssp             ----HHHHHHHHHHSSTTSCHHHHHHHHHHHHHHHHHHHHH--HH---HHHTCSSC-----S-CCHHHHHHHHHHHH---
T ss_pred             ----HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHH--HH---HHhhcccc-----c-cCChHHHHHHHHHH---
Confidence                33444556787 5998888999999999998766655  22   11222231     0 12223333333333   


Q ss_pred             HHHHHHHHHHhccccchhhhhhhhhHHHHhhhhhcccccccchhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5460         444 VLTVKSSYVASTKYPRQNQVAKKSHTAIVDRILLVFSFMETDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEVANL  523 (994)
Q Consensus       444 ~~tv~~~~~as~K~~~~~~l~~~~~~avv~~v~~~dsF~dt~~PL~~L~~Aa~~Gd~e~~~~~a~~F~eha~~l~evA~l  523 (994)
                                    ++..+|++.+++|+++||+  |+|+|+++||+.|++|++.||+++|++|++.|++|++||++||+|
T Consensus       292 --------------~k~~dL~r~L~~Avvdqvs--D~F~dt~~pL~~Li~Aa~~g~ee~~~e~a~~F~eha~~lvevA~L  355 (832)
T 4igg_A          292 --------------KKTRDLRRQLRKAVMDHVS--DSFLETNVPLLVLIEAAKNGNEKEVKEYAQVFREHANKLIEVANL  355 (832)
T ss_dssp             --------------HHHHHHHHHHHHHHHHHHH--HHTSSSSHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------HHHHHHHHHHHHHHHHHHH--HHHHhcCchHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          4567899999999999999  669999999999999999999999999999999999999999999


Q ss_pred             HhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHhhhhHHHHHhhhhhhHHHhhhhHHHHHHHHHHHHHH
Q psy5460         524 ACSMSNNEDGVKMVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQSQVAQENMDVFKEAWDSQVRVL  603 (994)
Q Consensus       524 v~~~s~ne~~~~~i~~aa~~le~L~PQVI~Aar~l~~~P~sk~A~en~e~~~~~w~~~~~~~~e~~~~~k~~W~~~v~~L  603 (994)
                      +|++|+|+++++.++.++++++.|+||||+||++|+.||+||+|+||||+||+                  +|.++|++|
T Consensus       356 v~~~s~ne~~v~~i~~aa~~le~L~PQVI~Aar~L~~~P~Sk~A~Enle~f~~------------------~W~~~v~~L  417 (832)
T 4igg_A          356 ACSISNNEEGVKLVRMSASQLEALCPQVINAALALAAKPQSKLAQENMDLFKE------------------QWEKQVRVL  417 (832)
T ss_dssp             HHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH------------------HHHHHHHHH
T ss_pred             HHhhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHH------------------HHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998665                  688999999


Q ss_pred             HHhhhhhcChHHHHHhhHHHHHHHHHHHHHHHhcCChhhhhhhhhHHhhhhhHHHHHHHHhhhcCCCCcchHHHHHHHHH
Q psy5460         604 TEAVDDITTIDDFLAVSENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVAAEMDNYEPGIYTERVLEAIKV  683 (994)
Q Consensus       604 ~~~vDdit~~~dFl~vse~~i~~d~~~c~~Ai~~~~~~~l~~~a~~I~~ra~RV~~va~~e~~n~edp~~~~~v~~av~~  683 (994)
                      +++||+|+|++|||+|||++|++|+++|++||++++|++|++++++|+||++|||+|+++||+|||||+|+++|+++++.
T Consensus       418 ~~avDdi~di~dFL~vSe~~i~~dv~~c~~Al~~~~~~~~~~~A~~I~gRa~rV~~V~~~Emdn~edp~y~~~V~~av~~  497 (832)
T 4igg_A          418 TDAVDDITSIDDFLAVSENHILEDVNKCVIALQEKDVDGLDRTAGAIRGRAARVIHVVTSEMDNYEPGVYTEKVLEATKL  497 (832)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCSSHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHH--------------------------------------------------------------------------
Q psy5460         684 LREQGM--------------------------------------------------------------------------  689 (994)
Q Consensus       684 l~~~~~--------------------------------------------------------------------------  689 (994)
                      |+++++                                                                          
T Consensus       498 L~~~v~P~~~~~~~~a~~~~a~~p~~~~~~~~f~das~~l~~~V~~VR~Av~~~~~p~el~~~~~~~e~~~~~s~~~~~~  577 (832)
T 4igg_A          498 LSNTVMPRFTEQVEAAVEALSSDPAQPMDENEFIDASRLVYDGIRDIRKAVLMIRTPEELDDSDFETEDFDVRSRTSVQT  577 (832)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHTTSSSCCSCHHHHHHHHHHHHHHHHHHHHHHHSSCCC-----------------------
T ss_pred             HHHHhhHHHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHccCCCchhhcccccchhhcccccCCCCCC
Confidence            874310                                                                          


Q ss_pred             ------------HHhhcCCHHHHHHHHHhhhhhhhhhhhhHHHhhhhcCCCchHHHHHHHHHHHHHHHHHhhccCCCCCC
Q psy5460         690 ------------EAMRKMTEEDKQKIAQQVEFFRSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKT  757 (994)
Q Consensus       690 ------------ea~~~l~~e~k~kIa~~~~~~~~~~~~l~~E~~kWd~~~NdIv~~ak~Ma~~m~~m~~ftrg~g~lkt  757 (994)
                                  +.++++|+++|++|++++..|+..+++||+|++|||+++||||++||+||.|||+||+||||+|||||
T Consensus       578 ~~~~~~~~~~~~~~~~~~p~eek~ki~~~~~~~~~~~~~l~~E~~kWd~~~n~iv~~ak~m~~~m~~m~~~~rg~g~lk~  657 (832)
T 4igg_A          578 EDDQLIAGQSARAIMAQLPQEQKAKIAEQVASFQEEKSKLDAEVSKWDDSGNDIIVLAKQMCMIMMEMTDFTRGKGPLKN  657 (832)
T ss_dssp             -------CCSHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCSSSHHHHHHHHHHHHHHHHHHHTTTCSSCCS
T ss_pred             CCCCCCCCcchhhcccCCCchhhhHHHHHHHHHHHHHhhHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence                        11347889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHhccCCCcchHHHHHHHHHhhhhhhhHhhhhhhccccccCCchhhHHHHHHHHHHH
Q psy5460         758 TMDVINAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQKPTNKDLLAYLQRIALY  837 (994)
Q Consensus       758 t~dli~~Ak~iae~~~~l~~~a~~~a~~c~D~~~k~~Ll~~~e~i~t~~~QLki~s~vka~~~~~~~~~~~~~~~~~~~~  837 (994)
                      |+|||++||+||++|+++++++|+||++|||+++|++||+||++||||||||||+++|||++++.               
T Consensus       658 ~~dli~~Ak~ia~~~~~~~~~~~~~a~~c~d~~~k~~ll~~~~~i~~~~~QL~i~~~vka~~~~~---------------  722 (832)
T 4igg_A          658 TSDVISAAKKIAEAGSRMDKLGRTIADHCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNL---------------  722 (832)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSTTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSSS---------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhHHHHHHHHHHhccccccCC---------------
Confidence            99999999999999999999999999999999999999999999999999999999999887654               


Q ss_pred             hhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHHHHhHhhcccccccccchhhhhHHHHHHHhhhH
Q psy5460         838 CHQLNITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVALDSATSLIQAAKNLMN  917 (994)
Q Consensus       838 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~a~nlm~~v~~~v~~~~~as~k~~~~~~~~~~~~~~~~~~~~~~~~  917 (994)
                                       ++++++|+.+++++||+||||||++|++||++||+|||||.++.+.                 
T Consensus       723 -----------------~~~~~~s~~d~~~~li~~aknlm~~v~~~v~~~~~as~k~~~~~~~-----------------  768 (832)
T 4igg_A          723 -----------------GGELVVSGVDSAMSLIQAAKNLMNAVVQTVKASYVASTKYQKSQGM-----------------  768 (832)
T ss_dssp             -----------------CCSSCEEHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHTC-----------------
T ss_pred             -----------------CccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc-----------------
Confidence                             7889999999999999999999999999999999999999996331                 


Q ss_pred             HHHHHhhccccccccCCCCCCCCcceeEeeccCCCCCCCCCCCChhHHHHHhhhccccccCChhhhhhhccCCC
Q psy5460         918 AVVLTVKSSYVASTKYPRQNQVASPIVVWKMKAPEKKPLVRPEKPEEVRAKVRKGSQKKVQNPIKALSEFQSPT  991 (994)
Q Consensus       918 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  991 (994)
                                         .++++|+|.||||+|||||||++++|++++++|||||+|+|+||+|+||||++++
T Consensus       769 -------------------~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  823 (832)
T 4igg_A          769 -------------------ASLNLPAVSWKMKAPEKKPLVKREKQDETQTKIKRASQKKHVNPVQALSEFKAMD  823 (832)
T ss_dssp             -------------------SSCCCCCCCCCC-------------------------------------------
T ss_pred             -------------------cccccchhhccCCCccccccccccCchhhcchhcccccccCCCHHHHHHHhhccC
Confidence                               2357999999999999999999999999999999999999999999999999965
>4igg_A Catenin alpha-1; asymmetric dimer, adherens junctions, F-actin binding, cell; 3.66A {Homo sapiens} Back     alignment and structure
>1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A {Homo sapiens} PDB: 1st6_A Back     alignment and structure
>1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A {Homo sapiens} PDB: 1st6_A Back     alignment and structure
>1h6g_A Alpha-1 catenin; adhesion modulation, cytoskeleton; 2.2A {Homo sapiens} SCOP: a.24.9.1 a.24.9.1 PDB: 1l7c_A Back     alignment and structure
>1qkr_A Vinculin, tail domain; actin cytoskeleton, cell adhesion, helical bundle, lipid binding; 1.8A {Gallus gallus} SCOP: a.24.9.1 PDB: 3h2u_A 3h2v_A 1rke_B 3myi_A Back     alignment and structure
>3vf0_A Vinculin, metavinculin; cytoskeletal F-actin binding protein, CEL adhesion-protein binding complex; HET: EPE; 2.54A {Homo sapiens} Back     alignment and structure
>1h6g_A Alpha-1 catenin; adhesion modulation, cytoskeleton; 2.2A {Homo sapiens} SCOP: a.24.9.1 a.24.9.1 PDB: 1l7c_A Back     alignment and structure
>3vf0_A Vinculin, metavinculin; cytoskeletal F-actin binding protein, CEL adhesion-protein binding complex; HET: EPE; 2.54A {Homo sapiens} Back     alignment and structure
>1qkr_A Vinculin, tail domain; actin cytoskeleton, cell adhesion, helical bundle, lipid binding; 1.8A {Gallus gallus} SCOP: a.24.9.1 PDB: 3h2u_A 3h2v_A 1rke_B 3myi_A Back     alignment and structure
>2l7a_A Talin-1; vinculin, bundle, focal adhesion, integrin, cell ADHE; NMR {Mus musculus} Back     alignment and structure
>1dow_A Alpha-catenin; four-helix bundle, cell adhesion; 1.80A {Mus musculus} SCOP: a.24.9.1 PDB: 1dov_A Back     alignment and structure
>3dyj_A Talin-1; helix bundles, cytoskeletal protein, integrin-bindin site, IBS2, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane; 1.85A {Mus musculus} PDB: 4dj9_B Back     alignment and structure
>3rf3_A Vinculin, metavinculin; alpha-helix bundle domain, cytoskeletal protein, protein-Pro interactions, cell adhesion, cytoskeleton; 1.61A {Homo sapiens} PDB: 4dj9_A 1rke_A 1rkc_A 1syq_A 1ydi_A 2gww_A 2hsq_A 2ibf_A 3tj6_A 2gdc_A 4e17_A 4e18_A 3tj5_A 1u6h_A 1xwj_A 1zvz_A 1zw2_A 1zw3_A 3s90_A 4ehp_A ... Back     alignment and structure
>3rf3_A Vinculin, metavinculin; alpha-helix bundle domain, cytoskeletal protein, protein-Pro interactions, cell adhesion, cytoskeleton; 1.61A {Homo sapiens} PDB: 4dj9_A 1rke_A 1rkc_A 1syq_A 1ydi_A 2gww_A 2hsq_A 2ibf_A 3tj6_A 2gdc_A 4e17_A 4e18_A 3tj5_A 1u6h_A 1xwj_A 1zvz_A 1zw2_A 1zw3_A 3s90_A 4ehp_A ... Back     alignment and structure
>3dyj_A Talin-1; helix bundles, cytoskeletal protein, integrin-bindin site, IBS2, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane; 1.85A {Mus musculus} PDB: 4dj9_B Back     alignment and structure
>2x0c_A Talin-1; cytoskeleton, cell membrane, actin, synemin, integrin, vincu cell adhesion, cell projection; 2.00A {Mus musculus} PDB: 1zw3_B Back     alignment and structure
>1sj8_A Talin 1; structural protein; 2.60A {Mus musculus} SCOP: a.215.1.1 a.216.1.1 Back     alignment and structure
>2l7a_A Talin-1; vinculin, bundle, focal adhesion, integrin, cell ADHE; NMR {Mus musculus} Back     alignment and structure
>1dow_A Alpha-catenin; four-helix bundle, cell adhesion; 1.80A {Mus musculus} SCOP: a.24.9.1 PDB: 1dov_A Back     alignment and structure
>1sj8_A Talin 1; structural protein; 2.60A {Mus musculus} SCOP: a.215.1.1 a.216.1.1 Back     alignment and structure
>2x0c_A Talin-1; cytoskeleton, cell membrane, actin, synemin, integrin, vincu cell adhesion, cell projection; 2.00A {Mus musculus} PDB: 1zw3_B Back     alignment and structure
>1u89_A Talin 1, talin; 4-helix bundle, LEFT-handed, structural protein; NMR {Mus musculus} SCOP: a.216.1.1 Back     alignment and structure
>3fyq_A CG6831-PA (talin); 5-helix bundle, cell adhesion; 1.95A {Drosophila melanogaster} Back     alignment and structure
>2l10_A Talin-1; helical bundle, cytoskeleton, focal adhesion, structu protein; NMR {Mus musculus} Back     alignment and structure
>4f7g_B Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus} PDB: 2kbb_A 2kgx_A Back     alignment and structure
>1u89_A Talin 1, talin; 4-helix bundle, LEFT-handed, structural protein; NMR {Mus musculus} SCOP: a.216.1.1 Back     alignment and structure
>2l7n_A Talin-1; integrin, bundle, focal adhesion, structural protein; NMR {Mus musculus} Back     alignment and structure
>2b0h_A Talin-1; vinculin, helical bundle, VBS, structural protein; NMR {Mus musculus} SCOP: a.24.9.2 Back     alignment and structure
>2kvp_A Talin-1; VBS, vinculin, helical bundle, cytoplasm, cytoskeleto membrane, phosphoprotein, structural protein, acetylation, membrane; NMR {Mus musculus} Back     alignment and structure
>3fyq_A CG6831-PA (talin); 5-helix bundle, cell adhesion; 1.95A {Drosophila melanogaster} Back     alignment and structure
>2l10_A Talin-1; helical bundle, cytoskeleton, focal adhesion, structu protein; NMR {Mus musculus} Back     alignment and structure
>2jsw_A Talin-1; C-terminal actin binding site, ABS3, thatch domain, cytoskeleton, phosphorylation, structural protein, actin- binding protein; NMR {Mus musculus} Back     alignment and structure
>2jsw_A Talin-1; C-terminal actin binding site, ABS3, thatch domain, cytoskeleton, phosphorylation, structural protein, actin- binding protein; NMR {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 994
d1qkra_181 a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [T 9e-55
d1qkra_181 a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [T 5e-49
d1h6ga2124 a.24.9.1 (A:508-631) alpha-catenin {Human (Homo sa 7e-53
d1h6ga2124 a.24.9.1 (A:508-631) alpha-catenin {Human (Homo sa 7e-30
d1st6a7137 a.24.9.1 (A:719-855) Vinculin {Chicken (Gallus gal 2e-42
d1st6a7137 a.24.9.1 (A:719-855) Vinculin {Chicken (Gallus gal 2e-23
d1h6ga1131 a.24.9.1 (A:377-507) alpha-catenin {Human (Homo sa 7e-40
d1h6ga1131 a.24.9.1 (A:377-507) alpha-catenin {Human (Homo sa 6e-38
d1st6a672 a.24.9.1 (A:647-718) Vinculin {Chicken (Gallus gal 7e-22
d1st6a672 a.24.9.1 (A:647-718) Vinculin {Chicken (Gallus gal 6e-18
d1u89a1138 a.216.1.1 (A:752-889) Talin 1 {Mouse (Mus musculus 1e-11
d1u89a1138 a.216.1.1 (A:752-889) Talin 1 {Mouse (Mus musculus 2e-11
d1sj8a2125 a.216.1.1 (A:658-782) Talin 1 {Mouse (Mus musculus 5e-09
d1sj8a2125 a.216.1.1 (A:658-782) Talin 1 {Mouse (Mus musculus 1e-06
d1st6a5158 a.24.9.1 (A:489-646) Vinculin {Chicken (Gallus gal 3e-07
d1st6a5158 a.24.9.1 (A:489-646) Vinculin {Chicken (Gallus gal 5e-05
>d1qkra_ a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 181 Back     information, alignment and structure

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: alpha-catenin/vinculin-like
family: alpha-catenin/vinculin
domain: Vinculin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score =  185 bits (472), Expect = 9e-55
 Identities = 50/170 (29%), Positives = 76/170 (44%), Gaps = 4/170 (2%)

Query: 292 EEDKQKIAQQVEFFRSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLK 351
           E+   +   Q         +   E  KW   GNDII  AK M ++M EM+   RG    K
Sbjct: 7   EQKAGEAINQP--MMMAARQLHDEARKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGNK 64

Query: 352 TTMDVINAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVK 411
               +I  AK I++A   + +L +++A QC +   + +LL   +RI     QL I S VK
Sbjct: 65  R--ALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVK 122

Query: 412 ADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQN 461
           A +   +         +   L+  A+NLM +V  TV+ +  AS K     
Sbjct: 123 ATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEAASIKIRTDA 172
>d1qkra_ a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 181 Back     information, alignment and structure
>d1h6ga2 a.24.9.1 (A:508-631) alpha-catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Back     information, alignment and structure
>d1h6ga2 a.24.9.1 (A:508-631) alpha-catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Back     information, alignment and structure
>d1st6a7 a.24.9.1 (A:719-855) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 137 Back     information, alignment and structure
>d1st6a7 a.24.9.1 (A:719-855) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 137 Back     information, alignment and structure
>d1h6ga1 a.24.9.1 (A:377-507) alpha-catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 131 Back     information, alignment and structure
>d1h6ga1 a.24.9.1 (A:377-507) alpha-catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 131 Back     information, alignment and structure
>d1st6a6 a.24.9.1 (A:647-718) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 72 Back     information, alignment and structure
>d1st6a6 a.24.9.1 (A:647-718) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 72 Back     information, alignment and structure
>d1u89a1 a.216.1.1 (A:752-889) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 138 Back     information, alignment and structure
>d1u89a1 a.216.1.1 (A:752-889) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 138 Back     information, alignment and structure
>d1sj8a2 a.216.1.1 (A:658-782) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 125 Back     information, alignment and structure
>d1sj8a2 a.216.1.1 (A:658-782) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 125 Back     information, alignment and structure
>d1st6a5 a.24.9.1 (A:489-646) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 158 Back     information, alignment and structure
>d1st6a5 a.24.9.1 (A:489-646) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 158 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query994
d1qkra_181 Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} 100.0
d1qkra_181 Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} 100.0
d1h6ga1131 alpha-catenin {Human (Homo sapiens) [TaxId: 9606]} 99.98
d1h6ga2124 alpha-catenin {Human (Homo sapiens) [TaxId: 9606]} 99.97
d1h6ga1131 alpha-catenin {Human (Homo sapiens) [TaxId: 9606]} 99.97
d1st6a7137 Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} 99.94
d1st6a672 Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} 99.81
d1st6a672 Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} 99.73
d1h6ga2124 alpha-catenin {Human (Homo sapiens) [TaxId: 9606]} 99.72
d1st6a5158 Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} 99.6
d1st6a7137 Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} 99.53
d1sj8a2125 Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} 98.52
d1sj8a2125 Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} 98.08
d1u89a1138 Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} 97.87
d1dova_181 alpha-catenin {Mouse (Mus musculus) [TaxId: 10090] 97.66
d1u89a1138 Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} 97.52
d1st6a4117 Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} 96.8
d2b0ha1136 Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} 96.74
d1dova_181 alpha-catenin {Mouse (Mus musculus) [TaxId: 10090] 96.46
d2b0ha1136 Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} 96.35
d1st6a3119 Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} 95.15
d1t01a2127 Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} 93.73
d1r0da_194 Huntingtin interacting protein 12 {Human (Homo sap 93.65
d1t01a1125 Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} 93.58
d1t01a2127 Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} 92.92
d1t01a1125 Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} 92.5
d1r0da_194 Huntingtin interacting protein 12 {Human (Homo sap 91.35
d1st6a5158 Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} 88.03
>d1qkra_ a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: alpha-catenin/vinculin-like
family: alpha-catenin/vinculin
domain: Vinculin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=2.5e-43  Score=357.09  Aligned_cols=169  Identities=32%  Similarity=0.466  Sum_probs=149.5

Q ss_pred             cCCHHHHHHHHHhhhhhhhhhhhhHHHhhhhcCCCchHHHHHHHHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHHhhh
Q psy5460         694 KMTEEDKQKIAQQVEFFRSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKISEAGT  773 (994)
Q Consensus       694 ~l~~e~k~kIa~~~~~~~~~~~~l~~E~~kWd~~~NdIv~~ak~Ma~~m~~m~~ftrg~g~lktt~dli~~Ak~iae~~~  773 (994)
                      .+|++++.+|..|  .|..++++||+|++||||+|||||++||+||.+|++||+|+||+||  +|+|||++||.||++|.
T Consensus         4 ~~~~~~~~~~~~q--~~~~a~~~l~~E~~kW~~~~Ndii~~ak~Ma~~m~~m~~f~rg~g~--~k~dLI~aAK~iA~a~~   79 (181)
T d1qkra_           4 EFPEQKAGEAINQ--PMMMAARQLHDEARKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSG--NKRALIQCAKDIAKASD   79 (181)
T ss_dssp             CCCCCCTTHHHHC--HHHHHHHHHHHHHTTBCCTTCHHHHHHHHHHHHHHHHHHHTTSCGG--GHHHHHHHHHHHHHHHH
T ss_pred             ccccccccchhcc--HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHH
Confidence            3555666677665  4666789999999999999999999999999999999999999997  46899999999999999


Q ss_pred             HHHHHHHHHhccCCCcchHHHHHHHHHhhhhhhhHhhhhhhccccccCCchhhHHHHHHHHHHHhhhhhhhhhhhhhhcc
Q psy5460         774 NLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQKPTNKDLLAYLQRIALYCHQLNITSKVKADVQN  853 (994)
Q Consensus       774 ~l~~~a~~~a~~c~D~~~k~~Ll~~~e~i~t~~~QLki~s~vka~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  853 (994)
                      +|++++|+||++|+|++++++|+.++++||+||+||+|+|+|||++.|..+                             
T Consensus        80 ~L~~~Ar~iA~~c~D~~~k~~Li~~a~~i~~~ttQL~i~skVKA~~~~~~~-----------------------------  130 (181)
T d1qkra_          80 EVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTN-----------------------------  130 (181)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCTT-----------------------------
T ss_pred             HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-----------------------------
Confidence            999999999999999999999999999999999999999999998877532                             


Q ss_pred             cccccccccccchhHHHHHHHHHHHHHHHHHHHHhHhhccccccc
Q psy5460         854 ISGELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQN  898 (994)
Q Consensus       854 ~~~~~~~~~~~~~~~li~~a~nlm~~v~~~v~~~~~as~k~~~~~  898 (994)
                      .+++.   +.++.++||+||||||++|++||++||+|||||+.+.
T Consensus       131 ~~~~~---~~~a~e~LI~aAkNLm~aV~~tV~a~~~as~K~~~~~  172 (181)
T d1qkra_         131 ISDEE---SEQATEMLVHNAQNLMQSVKETVREAEAASIKIRTDA  172 (181)
T ss_dssp             SCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSCG
T ss_pred             hhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            11111   2456679999999999999999999999999998874
>d1qkra_ a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1h6ga1 a.24.9.1 (A:377-507) alpha-catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h6ga2 a.24.9.1 (A:508-631) alpha-catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h6ga1 a.24.9.1 (A:377-507) alpha-catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1st6a7 a.24.9.1 (A:719-855) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1st6a6 a.24.9.1 (A:647-718) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1st6a6 a.24.9.1 (A:647-718) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1h6ga2 a.24.9.1 (A:508-631) alpha-catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1st6a5 a.24.9.1 (A:489-646) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1st6a7 a.24.9.1 (A:719-855) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1sj8a2 a.216.1.1 (A:658-782) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1sj8a2 a.216.1.1 (A:658-782) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1u89a1 a.216.1.1 (A:752-889) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1dova_ a.24.9.1 (A:) alpha-catenin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1u89a1 a.216.1.1 (A:752-889) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1st6a4 a.24.9.1 (A:372-488) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d2b0ha1 a.24.9.2 (A:1838-1973) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1dova_ a.24.9.1 (A:) alpha-catenin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2b0ha1 a.24.9.2 (A:1838-1973) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1t01a2 a.24.9.1 (A:126-252) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1r0da_ a.216.1.1 (A:) Huntingtin interacting protein 12 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t01a1 a.24.9.1 (A:1-125) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1t01a2 a.24.9.1 (A:126-252) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1t01a1 a.24.9.1 (A:1-125) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1r0da_ a.216.1.1 (A:) Huntingtin interacting protein 12 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1st6a5 a.24.9.1 (A:489-646) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure