Psyllid ID: psy5467

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-------
Protein Sequence
MSEETPAAPTSSTPPAEVAPEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHIV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccEEEEEEEcEEEEccEEEEEEEcccccccccccccccccccHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccEEEEEEEEEEEEccEEEEEEEEccccHHHcEEEEHHHEEcHHHHHHHHHHc
Coil and Loop (DISEMBL)
mseetpaaptsstppaevapeeegaefsvETILDKRIVNGKIEYLLKwkgysdddntwepeenldcpdlIANFIHIV
Flexible Loop (DISEMBL)
mseetpaaptsstppaevapeeegaefsvetildkrivnGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHIV
Low Complexity Region (SEG)
MseetpaaptsstppaevapeeegaeFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHIV
Disordered region (IsUnstruct)
**************************FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI*
Disordered Region (DISOPRED)
**************************FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHIV
Disordered Region (DISEMBL)
**************************FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHIV
Disordered Region (DISPRO)
************************AEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHIV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSEETPAAPTSSTPPAEVAPEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHIV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	77	2.2.26 [Sep-21-2011]
P23198	183	Chromobox protein homolog	yes	N/A	0.714	0.300	0.672	1e-17
Q5R6X7	183	Chromobox protein homolog	yes	N/A	0.714	0.300	0.672	2e-17
Q13185	183	Chromobox protein homolog	yes	N/A	0.714	0.300	0.672	2e-17
P83917	185	Chromobox protein homolog	no	N/A	0.558	0.232	0.790	2e-16
P83916	185	Chromobox protein homolog	no	N/A	0.558	0.232	0.790	2e-16
P45973	191	Chromobox protein homolog	no	N/A	0.623	0.251	0.625	6e-15
Q61686	191	Chromobox protein homolog	no	N/A	0.623	0.251	0.625	7e-15
P29227	213	Heterochromatin protein 1	N/A	N/A	0.610	0.220	0.617	1e-13
P05205	206	Heterochromatin protein 1	no	N/A	0.610	0.228	0.595	5e-13
Q6AYK9	589	Chromodomain Y-like prote	no	N/A	0.922	0.120	0.438	4e-11

>sp|P23198|CBX3_MOUSE Chromobox protein homolog 3 OS=Mus musculus GN=Cbx3 PE=1 SV=2

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 47/55 (85%)

Query: 21 EEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIH 75
          E E  EF VE +LD+R+VNGK+EY LKWKG++D DNTWEPEENLDCP+LI +F++
Sbjct: 24 EAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEDFLN 78

Component of heterochromatin. Recognizes and binds histone H3 tails methylated at 'Lys-9', leading to epigenetic repression. Probably involved in the repression of many genes located in euchromatin, such as E2F1, MYC and CDC25A. Involved in the formation of functional kinetochore through interaction with MIS12 complex proteins.
Mus musculus (taxid: 10090)

>sp|Q5R6X7|CBX3_PONAB Chromobox protein homolog 3 OS=Pongo abelii GN=CBX3 PE=2 SV=1

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 46/55 (83%)

Query: 21 EEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIH 75
          E E  EF VE +LD+R+VNGK+EY LKWKG++D DNTWEPEENLDCP+LI  F++
Sbjct: 24 EAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLN 78

Seems to be involved in transcriptional silencing in heterochromatin-like complexes. Recognizes and binds histone H3 tails methylated at 'Lys-9', leading to epigenetic repression. May contribute to the association of the heterochromatin with the inner nuclear membrane through its interaction with lamin B receptor (LBR). Involved in the formation of functional kinetochore through interaction with MIS12 complex proteins.

Pongo abelii (taxid: 9601)

>sp|Q13185|CBX3_HUMAN Chromobox protein homolog 3 OS=Homo sapiens GN=CBX3 PE=1 SV=4

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 46/55 (83%)

Query: 21 EEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIH 75
          E E  EF VE +LD+R+VNGK+EY LKWKG++D DNTWEPEENLDCP+LI  F++
Sbjct: 24 EAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLN 78

Seems to be involved in transcriptional silencing in heterochromatin-like complexes. Recognizes and binds histone H3 tails methylated at 'Lys-9', leading to epigenetic repression. May contribute to the association of the heterochromatin with the inner nuclear membrane through its interaction with lamin B receptor (LBR). Involved in the formation of functional kinetochore through interaction with MIS12 complex proteins.

Homo sapiens (taxid: 9606)

>sp|P83917|CBX1_MOUSE Chromobox protein homolog 1 OS=Mus musculus GN=Cbx1 PE=1 SV=1

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 34/43 (79%), Positives = 40/43 (93%)

Query: 33 LDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIH 75
          LD+R+V GK+EYLLKWKG+SD+DNTWEPEENLDCPDLIA F+ 
Sbjct: 27 LDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQ 69

Component of heterochromatin. Recognizes and binds histone H3 tails methylated at 'Lys-9', leading to epigenetic repression. Interaction with lamin B receptor (LBR) can contribute to the association of the heterochromatin with the inner nuclear membrane.

Mus musculus (taxid: 10090)

>sp|P83916|CBX1_HUMAN Chromobox protein homolog 1 OS=Homo sapiens GN=CBX1 PE=1 SV=1

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 34/43 (79%), Positives = 40/43 (93%)

Query: 33 LDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIH 75
          LD+R+V GK+EYLLKWKG+SD+DNTWEPEENLDCPDLIA F+ 
Sbjct: 27 LDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQ 69

Component of heterochromatin. Recognizes and binds histone H3 tails methylated at 'Lys-9', leading to epigenetic repression. Interaction with lamin B receptor (LBR) can contribute to the association of the heterochromatin with the inner nuclear membrane.

Homo sapiens (taxid: 9606)

>sp|P45973|CBX5_HUMAN Chromobox protein homolog 5 OS=Homo sapiens GN=CBX5 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 30/48 (62%), Positives = 43/48 (89%)

Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFI 74
          + VE +LD+R+V G++EYLLKWKG+S++ NTWEPE+NLDCP+LI+ F+
Sbjct: 20 YVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFM 67

Component of heterochromatin that recognizes and binds histone H3 tails methylated at 'Lys-9' (H3K9me), leading to epigenetic repression. In contrast, it is excluded from chromatin when 'Tyr-41' of histone H3 is phosphorylated (H3Y41ph). Can interact with lamin-B receptor (LBR). This interaction can contribute to the association of the heterochromatin with the inner nuclear membrane. Involved in the formation of functional kinetochore through interaction with MIS12 complex proteins.

Homo sapiens (taxid: 9606)

>sp|Q61686|CBX5_MOUSE Chromobox protein homolog 5 OS=Mus musculus GN=Cbx5 PE=1 SV=1

 Score = 79.0 bits (193), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 30/48 (62%), Positives = 43/48 (89%)

Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFI 74
          + VE +LD+R+V G++EYLLKWKG+S++ NTWEPE+NLDCP+LI+ F+
Sbjct: 20 YVVEKVLDRRMVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFM 67

Component of heterochromatin that recognizes and binds histone H3 tails methylated at 'Lys-9' (H3K9me), leading to epigenetic repression. In contrast, it is excluded from chromatin when 'Tyr-41' of histone H3 is phosphorylated (H3Y41ph). Can interact with lamin-B receptor (LBR). This interaction can contribute to the association of the heterochromatin with the inner nuclear membrane. Involved in the formation of functional kinetochore through interaction with MIS12 complex proteins.

Mus musculus (taxid: 10090)

>sp|P29227|HP1_DROVI Heterochromatin protein 1 OS=Drosophila virilis GN=Su(var)205 PE=3 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 29/47 (61%), Positives = 38/47 (80%)

Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
          ++VE ILD+R+  GK+EY LKWKGY++ +NTWEPE NLDC DLI  +
Sbjct: 24 YAVEKILDRRVRKGKVEYYLKWKGYAETENTWEPEGNLDCQDLIQQY 70

Structural component of heterochromatin, involved in gene repression and the modification of position-effect-variegation. Recognizes and binds histone H3 tails methylated at 'Lys-9', leading to epigenetic repression.

Drosophila virilis (taxid: 7244)

>sp|P05205|HP1_DROME Heterochromatin protein 1 OS=Drosophila melanogaster GN=Su(var)205 PE=1 SV=2

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 37/47 (78%)

Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
          ++VE I+D+R+  GK+EY LKWKGY + +NTWEPE NLDC DLI  +
Sbjct: 24 YAVEKIIDRRVRKGKVEYYLKWKGYPETENTWEPENNLDCQDLIQQY 70

Structural component of heterochromatin, involved in gene repression and the modification of position-effect-variegation. Recognizes and binds histone H3 tails methylated at 'Lys-9', leading to epigenetic repression.

Drosophila melanogaster (taxid: 7227)

>sp|Q6AYK9|CDYL_RAT Chromodomain Y-like protein OS=Rattus norvegicus GN=Cdyl PE=2 SV=1

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/73 (43%), Positives = 50/73 (68%), Gaps = 2/73 (2%)

Query: 3   EETPAAPTSSTPPAEVAPEEEGAEFSVETILDKRI-VNGKIEYLLKWKGYSDDDNTWEPE 61
           ++  A P + + P +V+P  + AE  VE+I+DKR    GK EYL++WKGY  +D+TWEPE
Sbjct: 31  QQNNAVPATVSDPDQVSPAVQDAETQVESIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPE 90

Query: 62  ENL-DCPDLIANF 73
           ++L +C + I +F
Sbjct: 91  QHLVNCEEYIHDF 103

Has histone acetyltransferase activity. May play a role in histone hyperacetylation during spermatid maturation. Acts as repressor of transcription.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	77
157106228	182	hypothetical protein AaeL_AAEL004467 [Ae	0.831	0.351	0.640	7e-18
383858856	182	PREDICTED: chromobox protein homolog 3-l	0.662	0.280	0.764	8e-18
307198145	186	Chromobox protein-like protein 5 [Harpeg	0.753	0.311	0.688	9e-18
48097746	185	PREDICTED: chromobox protein homolog 1-l	0.753	0.313	0.688	1e-17
357617342	277	putative chromobox-like protein 1 [Danau	0.844	0.234	0.641	1e-17
350424127	186	PREDICTED: chromobox protein homolog 1-l	0.753	0.311	0.672	1e-17
307173418	186	Chromobox protein-like protein 5 [Campon	0.753	0.311	0.688	1e-17
322792847	187	hypothetical protein SINV_09512 [Solenop	0.740	0.304	0.7	2e-17
170028851	190	heterochromatin protein 1 alpha [Culex q	0.623	0.252	0.812	3e-17
189234230	338	PREDICTED: similar to chromobox homolog	0.675	0.153	0.788	5e-17

>gi|157106228|ref|XP_001649228.1| hypothetical protein AaeL_AAEL004467 [Aedes aegypti] gi|94469148|gb|ABF18423.1| chromobox-like protein 1 [Aedes aegypti] gi|108879922|gb|EAT44147.1| AAEL004467-PA [Aedes aegypti]

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 48/64 (75%)

Query: 10 TSSTPPAEVAPEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDL 69
          +   P     P E+  EFSVE ILD+R+VNGK+EY LKWKGYS +DNTWEPEENLDCPDL
Sbjct: 2  SKKAPAKNDGPVEQEGEFSVEKILDRRVVNGKVEYYLKWKGYSSNDNTWEPEENLDCPDL 61

Query: 70 IANF 73
          I  +
Sbjct: 62 IQAY 65

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858856|ref|XP_003704915.1| PREDICTED: chromobox protein homolog 3-like [Megachile rotundata]

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 39/51 (76%), Positives = 45/51 (88%)

Query: 23 EGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
          E  EFSVE +LD+R+V GK+EY LKWKGYS++DNTWEPEENLDCPDLIA F
Sbjct: 13 EAQEFSVEKVLDRRVVKGKVEYFLKWKGYSNNDNTWEPEENLDCPDLIAQF 63

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307198145|gb|EFN79173.1| Chromobox protein-like protein 5 [Harpegnathos saltator]

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 42/61 (68%), Positives = 50/61 (81%), Gaps = 3/61 (4%)

Query: 13 TPPAEVAPEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIAN 72
          +PP +   EEE   FSVE +LD+R+V GK+EY LKWKGYS+D+NTWEPEENLDCPDLIA 
Sbjct: 7  SPPTDAEGEEE---FSVEKVLDRRVVKGKVEYFLKWKGYSNDENTWEPEENLDCPDLIAQ 63

Query: 73 F 73
          F
Sbjct: 64 F 64

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48097746|ref|XP_393875.1| PREDICTED: chromobox protein homolog 1-like [Apis mellifera]

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/61 (68%), Positives = 50/61 (81%), Gaps = 3/61 (4%)

Query: 13 TPPAEVAPEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIAN 72
          + PAE A    G EFSVE +LD+R+V GK+EY LKWKGYS+++NTWEPEENLDCPDLIA 
Sbjct: 7  SSPAETAG---GEEFSVEKVLDRRVVKGKVEYFLKWKGYSNEENTWEPEENLDCPDLIAQ 63

Query: 73 F 73
          F
Sbjct: 64 F 64

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357617342|gb|EHJ70732.1| putative chromobox-like protein 1 [Danaus plexippus]

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/67 (64%), Positives = 54/67 (80%), Gaps = 2/67 (2%)

Query: 9  PTSSTPPAEVAPEEEGA--EFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDC 66
          P ++  P+E A  + G   EFSVE +LD+RI NGK+EYLLKWKGYSD+DNTWEPE+NLDC
Sbjct: 33 PNTNIQPSENAGPQSGKHEEFSVEKVLDRRIKNGKVEYLLKWKGYSDEDNTWEPEDNLDC 92

Query: 67 PDLIANF 73
          PDLI+ +
Sbjct: 93 PDLISAY 99

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350424127|ref|XP_003493697.1| PREDICTED: chromobox protein homolog 1-like [Bombus impatiens]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/61 (67%), Positives = 49/61 (80%), Gaps = 3/61 (4%)

Query: 13 TPPAEVAPEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIAN 72
          + P E A    G EFSVE +LD+R+V GK+EY LKWKGYS+++NTWEPEENLDCPDLIA 
Sbjct: 7  SSPGESAG---GEEFSVEKVLDRRVVKGKVEYFLKWKGYSNEENTWEPEENLDCPDLIAQ 63

Query: 73 F 73
          F
Sbjct: 64 F 64

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307173418|gb|EFN64371.1| Chromobox protein-like protein 5 [Camponotus floridanus]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/61 (68%), Positives = 50/61 (81%), Gaps = 3/61 (4%)

Query: 13 TPPAEVAPEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIAN 72
          +PP +   EEE   FSVE +LD+R+V GK+EY LKWKGYS+D+NTWEPEENLDCPDLIA 
Sbjct: 7  SPPTDNETEEE---FSVEKVLDRRVVKGKVEYFLKWKGYSNDENTWEPEENLDCPDLIAQ 63

Query: 73 F 73
          F
Sbjct: 64 F 64

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322792847|gb|EFZ16680.1| hypothetical protein SINV_09512 [Solenopsis invicta]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/60 (70%), Positives = 49/60 (81%), Gaps = 3/60 (5%)

Query: 14 PPAEVAPEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
          PP +   EEE   FSVE +LD+R+V GK+EY LKWKGYS+D+NTWEPEENLDCPDLIA F
Sbjct: 10 PPTDNETEEE---FSVEKVLDRRVVKGKVEYFLKWKGYSNDENTWEPEENLDCPDLIAQF 66

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170028851|ref|XP_001842308.1| heterochromatin protein 1 alpha [Culex quinquefasciatus] gi|167877993|gb|EDS41376.1| heterochromatin protein 1 alpha [Culex quinquefasciatus]

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 39/48 (81%), Positives = 44/48 (91%)

Query: 26 EFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
          EFSVE ILD+R+VNGK+EY LKWKGYS++DNTWEPEENLDCPDLI  F
Sbjct: 23 EFSVEKILDRRVVNGKVEYFLKWKGYSNEDNTWEPEENLDCPDLIQAF 70

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189234230|ref|XP_973019.2| PREDICTED: similar to chromobox homolog 1 [Tribolium castaneum] gi|270002409|gb|EEZ98856.1| hypothetical protein TcasGA2_TC004466 [Tribolium castaneum]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 41/52 (78%), Positives = 46/52 (88%)

Query: 22  EEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
           EE  E+SVE ILDKR +NGK+EYLLKWKGYS+ DNTWEPEENLDCPDLIA +
Sbjct: 187 EEHEEYSVEKILDKRTLNGKVEYLLKWKGYSEQDNTWEPEENLDCPDLIAAY 238

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	77
UNIPROTKB|H9L191	168	CBX1 "Uncharacterized protein"	0.623	0.285	0.75	3.6e-18
UNIPROTKB|O93480	185	CBX1 "Uncharacterized protein"	0.623	0.259	0.75	3.6e-18
UNIPROTKB|G5E6N7	185	CBX1 "Uncharacterized protein"	0.623	0.259	0.75	3.6e-18
UNIPROTKB|E2QT97	185	CBX1 "Uncharacterized protein"	0.623	0.259	0.75	3.6e-18
UNIPROTKB|B5MD17	168	CBX1 "Chromobox protein homolo	0.623	0.285	0.75	3.6e-18
UNIPROTKB|C9JWS9	110	CBX1 "Chromobox protein homolo	0.623	0.436	0.75	3.6e-18
UNIPROTKB|J3KS05	174	CBX1 "Chromobox protein homolo	0.623	0.275	0.75	3.6e-18
UNIPROTKB|K7ELA4	138	CBX1 "Chromobox protein homolo	0.623	0.347	0.75	3.6e-18
UNIPROTKB|P83916	185	CBX1 "Chromobox protein homolo	0.623	0.259	0.75	3.6e-18
UNIPROTKB|F1RWH1	185	CBX1 "Uncharacterized protein"	0.623	0.259	0.75	3.6e-18

UNIPROTKB|H9L191 CBX1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 36/48 (75%), Positives = 44/48 (91%)

Query:    27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFI 74
             + VE +LD+R+V GK+EYLLKWKG+SD+DNTWEPEENLDCPDLIA F+
Sbjct:    21 YVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFL 68

GO:0001939 "female pronucleus" evidence=IEA

GO:0001940 "male pronucleus" evidence=IEA

GO:0005721 "centromeric heterochromatin" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0010369 "chromocenter" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|O93480 CBX1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 36/48 (75%), Positives = 44/48 (91%)

Query:    27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFI 74
             + VE +LD+R+V GK+EYLLKWKG+SD+DNTWEPEENLDCPDLIA F+
Sbjct:    21 YVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFL 68

GO:0001940 "male pronucleus" evidence=IEA

GO:0005721 "centromeric heterochromatin" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0010369 "chromocenter" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0001939 "female pronucleus" evidence=IEA

UNIPROTKB|G5E6N7 CBX1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 36/48 (75%), Positives = 44/48 (91%)

Query:    27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFI 74
             + VE +LD+R+V GK+EYLLKWKG+SD+DNTWEPEENLDCPDLIA F+
Sbjct:    21 YVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFL 68

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0010369 "chromocenter" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005721 "centromeric heterochromatin" evidence=IEA

GO:0001940 "male pronucleus" evidence=IEA

GO:0001939 "female pronucleus" evidence=IEA

UNIPROTKB|E2QT97 CBX1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 36/48 (75%), Positives = 44/48 (91%)

Query:    27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFI 74
             + VE +LD+R+V GK+EYLLKWKG+SD+DNTWEPEENLDCPDLIA F+
Sbjct:    21 YVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFL 68

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0010369 "chromocenter" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005721 "centromeric heterochromatin" evidence=IEA

GO:0001940 "male pronucleus" evidence=IEA

GO:0001939 "female pronucleus" evidence=IEA

UNIPROTKB|B5MD17 CBX1 "Chromobox protein homolog 1" [Homo sapiens (taxid:9606)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 36/48 (75%), Positives = 44/48 (91%)

Query:    27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFI 74
             + VE +LD+R+V GK+EYLLKWKG+SD+DNTWEPEENLDCPDLIA F+
Sbjct:    21 YVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFL 68

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|C9JWS9 CBX1 "Chromobox protein homolog 1" [Homo sapiens (taxid:9606)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 36/48 (75%), Positives = 44/48 (91%)

Query:    27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFI 74
             + VE +LD+R+V GK+EYLLKWKG+SD+DNTWEPEENLDCPDLIA F+
Sbjct:    21 YVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFL 68

GO:0001939 "female pronucleus" evidence=IEA

GO:0001940 "male pronucleus" evidence=IEA

GO:0005721 "centromeric heterochromatin" evidence=IEA

GO:0010369 "chromocenter" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|J3KS05 CBX1 "Chromobox protein homolog 1" [Homo sapiens (taxid:9606)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 36/48 (75%), Positives = 44/48 (91%)

Query:    27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFI 74
             + VE +LD+R+V GK+EYLLKWKG+SD+DNTWEPEENLDCPDLIA F+
Sbjct:    21 YVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFL 68

GO:0001939 "female pronucleus" evidence=IEA

GO:0001940 "male pronucleus" evidence=IEA

GO:0005721 "centromeric heterochromatin" evidence=IEA

GO:0010369 "chromocenter" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|K7ELA4 CBX1 "Chromobox protein homolog 1" [Homo sapiens (taxid:9606)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 36/48 (75%), Positives = 44/48 (91%)

Query:    27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFI 74
             + VE +LD+R+V GK+EYLLKWKG+SD+DNTWEPEENLDCPDLIA F+
Sbjct:    21 YVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFL 68

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|P83916 CBX1 "Chromobox protein homolog 1" [Homo sapiens (taxid:9606)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 36/48 (75%), Positives = 44/48 (91%)

Query:    27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFI 74
             + VE +LD+R+V GK+EYLLKWKG+SD+DNTWEPEENLDCPDLIA F+
Sbjct:    21 YVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFL 68

GO:0001939 "female pronucleus" evidence=IEA

GO:0001940 "male pronucleus" evidence=IEA

GO:0005721 "centromeric heterochromatin" evidence=IEA

GO:0010369 "chromocenter" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0000785 "chromatin" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0000775 "chromosome, centromeric region" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0019899 "enzyme binding" evidence=IPI

GO:0003682 "chromatin binding" evidence=TAS

GO:0005720 "nuclear heterochromatin" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

UNIPROTKB|F1RWH1 CBX1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 36/48 (75%), Positives = 44/48 (91%)

Query:    27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFI 74
             + VE +LD+R+V GK+EYLLKWKG+SD+DNTWEPEENLDCPDLIA F+
Sbjct:    21 YVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFL 68

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0010369 "chromocenter" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005721 "centromeric heterochromatin" evidence=IEA

GO:0001940 "male pronucleus" evidence=IEA

GO:0001939 "female pronucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R6X7	CBX3_PONAB	No assigned EC number	0.6727	0.7142	0.3005	yes	N/A
Q10103	CHP1_SCHPO	No assigned EC number	0.5111	0.5714	0.0458	yes	N/A
Q13185	CBX3_HUMAN	No assigned EC number	0.6727	0.7142	0.3005	yes	N/A
P23198	CBX3_MOUSE	No assigned EC number	0.6727	0.7142	0.3005	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	77
pfam00385	52	pfam00385, Chromo, Chromo (CHRromatin Organisation	1e-15
cd00024	55	cd00024, CHROMO, Chromatin organization modifier (	9e-15
smart00298	55	smart00298, CHROMO, Chromatin organization modifie	3e-14

>gnl|CDD|215889 pfam00385, Chromo, Chromo (CHRromatin Organisation MOdifier) domain

 Score = 63.7 bits (156), Expect = 1e-15
 Identities = 28/48 (58%), Positives = 32/48 (66%), Gaps = 3/48 (6%)

Query: 29 VETILDKRIVN-GKIEYLLKWKGYSDDDNTWEPEENLDC--PDLIANF 73
          VE ILD R+   G  EYL+KWKGY  D+ TWEPEENL    P+LI  F
Sbjct: 2  VERILDHRLRKGGNKEYLVKWKGYPYDEATWEPEENLKACFPELIQAF 49

Length = 52

>gnl|CDD|237991 cd00024, CHROMO, Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus

 Score = 61.5 bits (150), Expect = 9e-15
 Identities = 30/51 (58%), Positives = 36/51 (70%), Gaps = 3/51 (5%)

Query: 26 EFSVETILDKRIV--NGKIEYLLKWKGYSDDDNTWEPEENL-DCPDLIANF 73
          E+ VE ILD R     G+ EYL+KWKGYS  ++TWEPEENL DC +LI  F
Sbjct: 2  EYEVEKILDHRKKKDGGEYEYLVKWKGYSYSEDTWEPEENLEDCKELIDEF 52

Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain. Length = 55

>gnl|CDD|214605 smart00298, CHROMO, Chromatin organization modifier domain

 Score = 60.3 bits (147), Expect = 3e-14
 Identities = 27/50 (54%), Positives = 35/50 (70%), Gaps = 2/50 (4%)

Query: 26 EFSVETILDKR-IVNGKIEYLLKWKGYSDDDNTWEPEENLD-CPDLIANF 73
          E+ VE ILD R    G++EYL+KWKGYS  ++TWEPEENL  C   + N+
Sbjct: 1  EYEVEKILDHRWKKKGELEYLVKWKGYSYSEDTWEPEENLLNCSKKLDNY 50

Length = 55

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	77
PF00385	55	Chromo: Chromo (CHRromatin Organisation MOdifier)	99.76
cd00024	55	CHROMO Chromatin organization modifier (chromo) do	99.68
KOG2748|consensus	369		99.64
KOG1911|consensus	270		99.56
smart00298	55	CHROMO Chromatin organization modifier domain.	99.53
cd00034	54	ChSh Chromo Shadow Domain, found in association wi	98.35
PF01393	58	Chromo_shadow: Chromo shadow domain Web page maint	98.32
KOG0384|consensus	1373		98.31
smart00300	61	ChSh Chromo Shadow Domain.	98.12
PF11717	55	Tudor-knot: RNA binding activity-knot of a chromod	97.4
PF14061	50	Mtf2_C: Polycomb-like MTF2 factor 2	97.21
KOG0384|consensus	1373		96.63
KOG0383|consensus	696		84.63

>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation

Probab=99.76  E-value=1.4e-18  Score=93.30  Aligned_cols=50  Identities=58%  Similarity=1.085  Sum_probs=46.2

Q ss_pred             EEEEEEEeEEEECCeE---EEEEEecCCCCCCCCcccCCCC-C-cHHHHHHHHHh
Q psy5467          27 FSVETILDKRIVNGKI---EYLLKWKGYSDDDNTWEPEENL-D-CPDLIANFIHI   76 (77)
Q Consensus        27 y~ve~Il~~r~~~~~~---~ylVkW~G~~~~~~TWE~~~~l-~-~~~ll~~y~~~   76 (77)
                      |+|++||++|..++..   +|||||+|++..++|||++++| + ++++|++|++|
T Consensus         1 ~~Ve~Il~~r~~~~~~~~~~ylVkW~g~~~~~~tWe~~~~l~~~~~~li~~f~~r   55 (55)
T PF00385_consen    1 YEVERILDHRVVKGGNKVYEYLVKWKGYPYSENTWEPEENLKNCFPELIEEFEKR   55 (55)
T ss_dssp             EEEEEEEEEEEETTEESEEEEEEEETTSSGGGEEEEEGGGCSSHCHHHHHHHHHH
T ss_pred             CEEEEEEEEEEeCCCcccEEEEEEECCCCCCCCeEeeHHHHhHhhHHHHHHHhCC
Confidence            7899999999987777   9999999999999999999999 4 49999999986

These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....

>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus

Probab=99.68  E-value=7.6e-17  Score=85.92  Aligned_cols=52  Identities=58%  Similarity=1.078  Sum_probs=47.1

Q ss_pred             ccEEEEEEEeEEEEC--CeEEEEEEecCCCCCCCCcccCCCC-CcHHHHHHHHHh
Q psy5467          25 AEFSVETILDKRIVN--GKIEYLLKWKGYSDDDNTWEPEENL-DCPDLIANFIHI   76 (77)
Q Consensus        25 ~~y~ve~Il~~r~~~--~~~~ylVkW~G~~~~~~TWE~~~~l-~~~~ll~~y~~~   76 (77)
                      ++|.|++||++|...  +..+|||||+|++..++||++..+| .++.+|.+|.++
T Consensus         1 ~e~~ve~Il~~r~~~~~~~~~y~VkW~g~~~~~~tWe~~~~l~~~~~~i~~~~~~   55 (55)
T cd00024           1 EEYEVEKILDHRKKKDGGEYEYLVKWKGYSYSEDTWEPEENLEDCKELIDEFKKK   55 (55)
T ss_pred             CCceEeeeeeeeecCCCCcEEEEEEECCCCCccCccccHHHhCchHHHHHHHHhC
Confidence            368999999999987  8999999999999999999999999 457999999863

Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.

>KOG2748|consensus

Probab=99.64  E-value=1.2e-17  Score=116.87  Aligned_cols=55  Identities=53%  Similarity=0.890  Sum_probs=52.6

Q ss_pred             CCCccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467          22 EEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI   76 (77)
Q Consensus        22 ~~~~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~   76 (77)
                      .++.+|.++.||.+|+++|+++|||||+||+..+|||||++||..+.||..|+++
T Consensus         6 vGe~VfAaEsIlkkRirKGrvEYlVKWkGWs~kyNTWEPEENILDpRLi~AFe~r   60 (369)
T KOG2748|consen    6 VGERVFAAESILKKRIRKGRVEYLVKWKGWSQKYNTWEPEENILDPRLIAAFEQR   60 (369)
T ss_pred             chhhHHHHHHHHHHHhhccceEEEEEecccccccCccCccccccCHHHHHHHHhh
Confidence            3688999999999999999999999999999999999999999999999999875

>KOG1911|consensus

Probab=99.56  E-value=1.7e-15  Score=103.55  Aligned_cols=59  Identities=64%  Similarity=1.137  Sum_probs=53.3

Q ss_pred             CCCCCCCccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCC-CCCcHHHHHHHHHh
Q psy5467          18 VAPEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEE-NLDCPDLIANFIHI   76 (77)
Q Consensus        18 ~~~~~~~~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~-~l~~~~ll~~y~~~   76 (77)
                      ....++++.|+|++|+++|..+|..+|||+|+||+..++||||+. +++|+++|.+|.++
T Consensus        40 ~~~~~~~~~~vvEki~~~r~~~g~~eYlvkW~Gy~~~~ntWEPee~~~~C~~li~~~~~~   99 (270)
T KOG1911|consen   40 ASEEEEEEEYVVEKILKRRKKNGKIEYLVKWKGYPDPDNTWEPEEHNLDCPELIDEFEKS   99 (270)
T ss_pred             cccccccchhhhhhhhhccccCCCceeeeecCCCCCccccCCchhhccccHHHHHHHHHH
Confidence            334457789999999999999999999999999999999999999 66999999999875

>smart00298 CHROMO Chromatin organization modifier domain

Probab=99.53  E-value=6e-15  Score=78.34  Aligned_cols=51  Identities=53%  Similarity=1.016  Sum_probs=46.4

Q ss_pred             cEEEEEEEeEE-EECCeEEEEEEecCCCCCCCCcccCCCCC-cHHHHHHHHHh
Q psy5467          26 EFSVETILDKR-IVNGKIEYLLKWKGYSDDDNTWEPEENLD-CPDLIANFIHI   76 (77)
Q Consensus        26 ~y~ve~Il~~r-~~~~~~~ylVkW~G~~~~~~TWE~~~~l~-~~~ll~~y~~~   76 (77)
                      .|.|++|+++| ..++..+|||||+|++..++||++..+|. ++++|.+|..+
T Consensus         1 ~~~v~~Il~~r~~~~~~~~ylVkW~g~~~~~~tW~~~~~l~~~~~~v~~~~~~   53 (55)
T smart00298        1 EYEVEKILDHRWKKKGELEYLVKWKGYSYSEDTWEPEENLLNCSKKLDNYKKK   53 (55)
T ss_pred             CcchheeeeeeecCCCcEEEEEEECCCCCccCceeeHHHHHHHHHHHHHHHHh
Confidence            36799999999 78888999999999999999999999995 99999999875

>cd00034 ChSh Chromo Shadow Domain, found in association with N-terminal chromo (CHRromatin Organization MOdifier) domain; Chromo domains mediate the interaction of the heterochromatin with other heterochromatin proteins, thereby affecting chromatin structure (e

Probab=98.35  E-value=4.8e-07  Score=48.63  Aligned_cols=45  Identities=29%  Similarity=0.634  Sum_probs=35.8

Q ss_pred             EEEEEeEEEEC-CeEEEEEEecCCCCCCCCcccCCCC--CcHHHHHHHHHh
Q psy5467          29 VETILDKRIVN-GKIEYLLKWKGYSDDDNTWEPEENL--DCPDLIANFIHI   76 (77)
Q Consensus        29 ve~Il~~r~~~-~~~~ylVkW~G~~~~~~TWE~~~~l--~~~~ll~~y~~~   76 (77)
                      +++|++....+ |.+.||++|+| +.  ....+..-+  .||.+|.+|+++
T Consensus         2 ~~~I~gat~~~~g~l~fl~kwk~-~~--~~lVp~~~~~~k~P~~vI~FYE~   49 (54)
T cd00034           2 VKPISGASKSDDGELTFLAKWKD-GQ--ASLVPNKELNVKCPLLVISFYEE   49 (54)
T ss_pred             ceEEEEEEEcCCCeEEEEEEEeC-Ce--EEEEEHHHHHhhCcHHHHHHHHH
Confidence            57788877766 99999999999 65  446666555  799999999874

g. Drosophila and human heterochromatin protein (HP1) and mammalian modifier 1 and modifier 2)

>PF01393 Chromo_shadow: Chromo shadow domain Web page maintained by Rein Aasland; InterPro: IPR008251 Chromo shadow domain is distantly related to chromo domain

Probab=98.32  E-value=3.1e-07  Score=50.08  Aligned_cols=47  Identities=26%  Similarity=0.586  Sum_probs=38.9

Q ss_pred             EEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCC--CcHHHHHHHHHh
Q psy5467          28 SVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL--DCPDLIANFIHI   76 (77)
Q Consensus        28 ~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l--~~~~ll~~y~~~   76 (77)
                      ..++|++.....|.+.|||||+|.+.  .+..+..-+  .||++|.+|+++
T Consensus         4 ~~E~Ivg~~d~~G~l~~likwk~~~~--~~~v~~~~~~~k~Pq~vI~FYE~   52 (58)
T PF01393_consen    4 EWEKIVGATDTNGELMFLIKWKNSGE--KDLVPSKEANEKCPQKVIKFYES   52 (58)
T ss_dssp             TEEEEEEEEECTSSEEEEEEETTSSS--EEEEEHHHHHHHSHHHHHHHHHH
T ss_pred             ChHHHheeecCCCcEEEEEEECCCCc--eEEeeHHHHHHHCcHHHHHHHHH
Confidence            47899999989999999999999764  456666544  799999999874

It is always found in association with a chromo domain. The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain [], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1); and mammalian modifier 1 and modifier 2. The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigenand and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1.; GO: 0005634 nucleus; PDB: 3Q6S_C 2FMM_B 3P7J_B 1E0B_B 3I3C_A 1DZ1_B 1S4Z_A 3KUP_D.

>KOG0384|consensus

Probab=98.31  E-value=2.5e-07  Score=73.53  Aligned_cols=51  Identities=27%  Similarity=0.646  Sum_probs=43.6

Q ss_pred             ccE-EEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCC--CcHHHHHHHHHh
Q psy5467          25 AEF-SVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL--DCPDLIANFIHI   76 (77)
Q Consensus        25 ~~y-~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l--~~~~ll~~y~~~   76 (77)
                      ..| .|++||++..... .+|||||+|.+.+++|||.++.+  .++..+..|+.|
T Consensus       283 ~dy~~VdRIia~~~~~d-~eYLvKW~~LpY~e~TWE~~~~I~~~~~~~~~~~~~R  336 (1373)
T KOG0384|consen  283 KDYVIVDRIIAEQTSKD-PEYLVKWRGLPYEECTWEDAEDIAKKAQEEIEEFQSR  336 (1373)
T ss_pred             hhhhhhhhhhhcccCCC-ceeEEEecCCCcccccccchhhhhhhHHHHHHHHhhh
Confidence            345 5899999888665 99999999999999999999999  468888888765

>smart00300 ChSh Chromo Shadow Domain

Probab=98.12  E-value=5.1e-07  Score=49.58  Aligned_cols=46  Identities=26%  Similarity=0.589  Sum_probs=36.8

Q ss_pred             EEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCC--CcHHHHHHHHHh
Q psy5467          28 SVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL--DCPDLIANFIHI   76 (77)
Q Consensus        28 ~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l--~~~~ll~~y~~~   76 (77)
                      ..++|++....+|.+.||++|+| +.  ....+..-+  .||.+|.+|+++
T Consensus         8 ~~e~Ivg~~d~~G~l~flikwk~-~~--~~lVp~~~~~~k~P~~vI~FYE~   55 (61)
T smart00300        8 SWEDIVGITKDDGELTFLIKWKD-DA--ASLVPNKEANVKCPQKVIRFYES   55 (61)
T ss_pred             CHHHHhceecCCCeEEEEEEEeC-Cc--EEEEEHHHHHHHChHHHHHHHHH
Confidence            45678888888999999999999 64  456666555  799999999874

>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F

Probab=97.40  E-value=0.00063  Score=36.33  Aligned_cols=41  Identities=29%  Similarity=0.636  Sum_probs=34.7

Q ss_pred             CccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCC
Q psy5467          24 GAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL   64 (77)
Q Consensus        24 ~~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l   64 (77)
                      +..+-.-+|++.+..++..+|+|++.|++...+-|.+.++|
T Consensus        13 ~~~~y~A~I~~~r~~~~~~~YyVHY~g~nkR~DeWV~~~~i   53 (55)
T PF11717_consen   13 DGQWYEAKILDIREKNGEPEYYVHYQGWNKRLDEWVPESRI   53 (55)
T ss_dssp             TTEEEEEEEEEEEECTTCEEEEEEETTSTGCC-EEEETTTE
T ss_pred             CCcEEEEEEEEEEecCCCEEEEEEcCCCCCCceeeecHHHc
Confidence            34555668999999999999999999999999999998876

...

>PF14061 Mtf2_C: Polycomb-like MTF2 factor 2

Probab=97.21  E-value=0.00076  Score=35.52  Aligned_cols=22  Identities=36%  Similarity=1.032  Sum_probs=17.7

Q ss_pred             EEEeEEE-ECCeEEEEEEecCCC
Q psy5467          31 TILDKRI-VNGKIEYLLKWKGYS   52 (77)
Q Consensus        31 ~Il~~r~-~~~~~~ylVkW~G~~   52 (77)
                      +|+.+|. -+|+.||||.|.|..
T Consensus        27 ~VlArRV~~dG~vQYLvEWeg~~   49 (50)
T PF14061_consen   27 RVLARRVTPDGKVQYLVEWEGAT   49 (50)
T ss_pred             EEEEEEEcCCCcEEEEEEecCcC
Confidence            4566666 689999999999964

>KOG0384|consensus

Probab=96.63  E-value=0.00073  Score=54.56  Aligned_cols=36  Identities=36%  Similarity=0.617  Sum_probs=28.3

Q ss_pred             eEEEEEEecCCCCCCCCcccCCCCC-----cHHHHHHHHHh
Q psy5467          41 KIEYLLKWKGYSDDDNTWEPEENLD-----CPDLIANFIHI   76 (77)
Q Consensus        41 ~~~ylVkW~G~~~~~~TWE~~~~l~-----~~~ll~~y~~~   76 (77)
                      ..+|||||+|+++-+|||++.+.|.     --.-|++|.++
T Consensus       225 ~~qFlIKWkg~SyLHctWet~~~L~~~~~rG~kKv~nf~kK  265 (1373)
T KOG0384|consen  225 EEQFLIKWKGWSYLHCTWETESELLEMNVRGLKKVDNFKKK  265 (1373)
T ss_pred             hhhhheeeccccceeccccchHHHHhhhHHHHHHHHHHHHH
Confidence            4789999999999999999999972     23455666554

>KOG0383|consensus

Probab=84.63  E-value=0.32  Score=37.85  Aligned_cols=46  Identities=28%  Similarity=0.629  Sum_probs=34.2

Q ss_pred             EEEEEEeEEE-ECCeEEEEEEecCCCCCCCCcccCC-CC-CcHHHHHHH
Q psy5467          28 SVETILDKRI-VNGKIEYLLKWKGYSDDDNTWEPEE-NL-DCPDLIANF   73 (77)
Q Consensus        28 ~ve~Il~~r~-~~~~~~ylVkW~G~~~~~~TWE~~~-~l-~~~~ll~~y   73 (77)
                      .|.+|+.++. ..+...|+|+|+.......+|+... ++ .+...+++|
T Consensus       210 ~i~rii~~~~s~~~~~~~~Vk~k~l~~d~~~~e~~~~~ip~~~~~~qe~  258 (696)
T KOG0383|consen  210 PIARIINRRSSQKGATDYLVKWKELSYDEQEWEVEDPDIPGYSSAGQEA  258 (696)
T ss_pred             ccchhhhhhcccccceeeEeeeccCCccccCCCcCCCCcccCccccccc
Confidence            3557777774 6788999999999999999999887 33 444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	77
3f2u_A	55	Crystal Structure Of Human Chromobox Homolog 1 (Cbx		3e-18
3dm1_A	58	Crystal Structure Of The Complex Of Human Chromobox		5e-17
3tzd_A	58	Crystal Structure Of The Complex Of Human Chromobox		6e-17
2l11_A	54	Solution Nmr Structure Of The Cbx3 In Complex With		6e-17
1ap0_A	73	Structure Of The Chromatin Binding (Chromo) Domain		8e-17
3fdt_A	59	Crystal Structure Of The Complex Of Human Chromobox		1e-15
1kna_A	69	Chromo Domain Of Hp1 Complexed With Histone H3 Tail		1e-12
3h91_A	54	Crystal Structure Of The Complex Of Human Chromobox		4e-10
2d9u_A	74	Solution Structure Of The Chromo Domain Of Chromobo		4e-10
2k28_A	60	Solution Nmr Structure Of The Chromo Domain Of The		4e-10
3i8z_A	55	Crystal Structure Of Human Chromobox Homolog 4 (Cbx		5e-10
3i91_A	54	Crystal Structure Of Human Chromobox Homolog 8 (Cbx		1e-09
2dnv_A	64	Solution Structure Of Rsgi Ruh-055, A Chromo Domain		1e-09
3i90_A	51	Crystal Structure Of Human Chromobox Homolog 6 (Cbx		1e-09
3gv6_A	58	Crystal Structure Of Human Chromobox Homolog 6 (Cbx		1e-09
2kvm_A	74	Solution Structure Of The Cbx7 Chromodomain In Comp		5e-09
2l12_A	56	Solution Nmr Structure Of The Chromobox Protein 7 W		6e-09
2k1b_A	73	Solution Nmr Structure Of The Chromo Domain Of The		6e-09
2dnt_A	78	Solution Structure Of Rsgi Ruh-064, A Chromo Domain		3e-08
3qo2_A	64	Structural Insights For Mpp8 Chromodomain Interacti		3e-08
3lwe_A	62	The Crystal Structure Of Mpp8 Length = 62		4e-08
4hae_A	81	Crystal Structure Of The Cdyl2-Chromodomain Length		1e-06
3mts_A	64	Chromo Domain Of Human Histone-lysine N-methyltrans		2e-06
1pfb_A	55	Structural Basis For Specific Binding Of Polycomb C		6e-06
1pdq_A	72	Polycomb Chromodomain Complexed With The Histone H3		8e-06
3g7l_A	61	Chromodomain Of Chp1 In Complex With Histone H3k9me		1e-04
2rsn_A	75	Solution Structure Of The Chromodomain Of Chp1 In C		1e-04
4ft2_A	784	Crystal Structure Of Zea Mays Zmet2 In Complex H3(1		5e-04
4fsx_A	784	Crystal Structure Of Se-Substituted Zea Mays Zmet2		5e-04

>pdb|3F2U|A Chain A, Crystal Structure Of Human Chromobox Homolog 1 (Cbx1) Length = 55

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 36/49 (73%), Positives = 44/49 (89%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIH 75
          + VE +LD+R+V GK+EYLLKWKG+SD+DNTWEPEENLDCPDLIA F+ 
Sbjct: 3  YVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQ 51

>pdb|3DM1|A Chain A, Crystal Structure Of The Complex Of Human Chromobox Homolog 3 (cbx3) With Peptide Length = 58

Iteration: 1
 Score = 82.8 bits (203), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 34/49 (69%), Positives = 43/49 (87%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIH 75
          F VE +LD+R+VNGK+EY LKWKG++D DNTWEPEENLDCP+LI  F++
Sbjct: 2  FVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLN 50

>pdb|3TZD|A Chain A, Crystal Structure Of The Complex Of Human Chromobox Homolog 3 (cbx3) Length = 58

Iteration: 1
 Score = 82.4 bits (202), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 34/49 (69%), Positives = 43/49 (87%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIH 75
          F VE +LD+R+VNGK+EY LKWKG++D DNTWEPEENLDCP+LI  F++
Sbjct: 7  FVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLN 55

>pdb|2L11|A Chain A, Solution Nmr Structure Of The Cbx3 In Complex With H3k9me3 Peptide Length = 54

Iteration: 1
 Score = 82.4 bits (202), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 34/49 (69%), Positives = 43/49 (87%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIH 75
          F VE +LD+R+VNGK+EY LKWKG++D DNTWEPEENLDCP+LI  F++
Sbjct: 3  FVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLN 51

>pdb|1AP0|A Chain A, Structure Of The Chromatin Binding (Chromo) Domain From Mouse Modifier Protein 1, Nmr, 26 Structures Length = 73

Iteration: 1
 Score = 82.0 bits (201), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 33 LDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIH 75
          LD+R+V GK+EYLLKWKG+SD+DNTWEPEENLDCPDLIA F+ 
Sbjct: 20 LDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQ 62

>pdb|3FDT|A Chain A, Crystal Structure Of The Complex Of Human Chromobox Homolog 5 (Cbx5) With H3k9(Me)3 Peptide Length = 59

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 30/48 (62%), Positives = 43/48 (89%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFI 74
          + VE +LD+R+V G++EYLLKWKG+S++ NTWEPE+NLDCP+LI+ F+
Sbjct: 4  YVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFM 51

>pdb|1KNA|A Chain A, Chromo Domain Of Hp1 Complexed With Histone H3 Tail Containing Dimethyllysine 9. Length = 69

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 36/47 (76%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
          ++VE I+D+R+  G +EY LKWKGY + +NTWEPE NLDC DLI  +
Sbjct: 17 YAVEKIIDRRVRKGMVEYYLKWKGYPETENTWEPENNLDCQDLIQQY 63

>pdb|3H91|A Chain A, Crystal Structure Of The Complex Of Human Chromobox Homolog 2 (Cbx2) And H3k27 Peptide Length = 54

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 34/47 (72%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
          F+ E IL KR+  GK+EYL+KW+G+S   N+WEPEEN+  P L+  F
Sbjct: 4  FAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAF 50

>pdb|2D9U|A Chain A, Solution Structure Of The Chromo Domain Of Chromobox Homolog 2 From Human Length = 74

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 34/47 (72%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
          F+ E IL KR+  GK+EYL+KW+G+S   N+WEPEEN+  P L+  F
Sbjct: 11 FAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAF 57

>pdb|2K28|A Chain A, Solution Nmr Structure Of The Chromo Domain Of The Chromobox Protein Homolog 4 Length = 60

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 35/47 (74%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
          F+VE+I  KRI  G++EYL+KW+G+S   NTWEPEEN+  P L+  F
Sbjct: 6  FAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAF 52

>pdb|3I8Z|A Chain A, Crystal Structure Of Human Chromobox Homolog 4 (Cbx4) Length = 55

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 35/47 (74%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
          F+VE+I  KRI  G++EYL+KW+G+S   NTWEPEEN+  P L+  F
Sbjct: 4  FAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAF 50

>pdb|3I91|A Chain A, Crystal Structure Of Human Chromobox Homolog 8 (Cbx8) With H3k9 Peptide Length = 54

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 24/47 (51%), Positives = 34/47 (72%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
          F+ E +L +RI  G++EYL+KWKG+S   +TWEPEEN+    L+A F
Sbjct: 4  FAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAF 50

>pdb|2DNV|A Chain A, Solution Structure Of Rsgi Ruh-055, A Chromo Domain From Mus Musculus Cdna Length = 64

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 24/47 (51%), Positives = 34/47 (72%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
          F+ E +L +RI  G++EYL+KWKG+S   +TWEPEEN+    L+A F
Sbjct: 11 FAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAF 57

>pdb|3I90|A Chain A, Crystal Structure Of Human Chromobox Homolog 6 (Cbx6) With H3k27 Peptide Length = 51

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
          F+ E+I+ +RI  G+IEYL+KWKG++   +TWEPEEN+    LIA F
Sbjct: 3  FAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAF 49

>pdb|3GV6|A Chain A, Crystal Structure Of Human Chromobox Homolog 6 (Cbx6) With H3k9 Peptide Length = 58

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
          F+ E+I+ +RI  G+IEYL+KWKG++   +TWEPEEN+    LIA F
Sbjct: 4  FAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAF 50

>pdb|2KVM|A Chain A, Solution Structure Of The Cbx7 Chromodomain In Complex With A H3k27me2 Peptide Length = 74

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 34/47 (72%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
          F+VE+I  KR+  GK+EYL+KWKG+    +TWEPEE++  P L+  +
Sbjct: 14 FAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAY 60

>pdb|2L12|A Chain A, Solution Nmr Structure Of The Chromobox Protein 7 With H3k9me3 Length = 56

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 34/47 (72%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
          F+VE+I  KR+  GK+EYL+KWKG+    +TWEPEE++  P L+  +
Sbjct: 5  FAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAY 51

>pdb|2K1B|A Chain A, Solution Nmr Structure Of The Chromo Domain Of The Chromobox Protein Homolog 7 Length = 73

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 34/47 (72%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
          F+VE+I  KR+  GK+EYL+KWKG+    +TWEPEE++  P L+  +
Sbjct: 22 FAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAY 68

>pdb|2DNT|A Chain A, Solution Structure Of Rsgi Ruh-064, A Chromo Domain From Human Cdna Length = 78

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 36/49 (73%), Gaps = 2/49 (4%)
Query: 27 FSVETILDKRI-VNGKIEYLLKWKGYSDDDNTWEPEENL-DCPDLIANF 73
          + VE I+DKR    GK EYL++WKGY  +D+TWEPE++L +C + I +F
Sbjct: 14 YEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDF 62

>pdb|3QO2|A Chain A, Structural Insights For Mpp8 Chromodomain Interaction With Histone H3 Lysine 9 Length = 64

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL-DCPDLIANF 73
          F VE ILD +   GK+ Y ++WKGY+ DD+TWEPE +L DC +++  F
Sbjct: 7  FEVEKILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEF 54

>pdb|3LWE|A Chain A, The Crystal Structure Of Mpp8 Length = 62

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL-DCPDLIANF 73
          F VE ILD +   GK+ Y ++WKGY+ DD+TWEPE +L DC +++  F
Sbjct: 5  FEVEKILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEF 52

>pdb|4HAE|A Chain A, Crystal Structure Of The Cdyl2-Chromodomain Length = 81

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 27 FSVETILDKRI-VNGKIEYLLKWKGYSDDDNTWEPEEN-LDCPDLIANF 73
          + VE I+DKR    GK EYL++WKGY   ++TWEPE + L C + I  F
Sbjct: 24 YEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEF 72

>pdb|3MTS|A Chain A, Chromo Domain Of Human Histone-lysine N-methyltransferase Suv39h1 Length = 64

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 29 VETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
          VE + D + +  +  YL+KW+GY D ++TWEP +NL C  ++  F
Sbjct: 3  VEYLCDYKKIREQEYYLVKWRGYPDSESTWEPRQNLKCVRILKQF 47

>pdb|1PFB|A Chain A, Structural Basis For Specific Binding Of Polycomb Chromodomain To Histone H3 Methylated At K27 Length = 55

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLI 70
          ++ E I+ KR+  G +EY +KWKG++   NTWEPE N+    LI
Sbjct: 4  YAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNILDRRLI 47

>pdb|1PDQ|A Chain A, Polycomb Chromodomain Complexed With The Histone H3 Tail Containing Trimethyllysine 27 Length = 72

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL 64
          ++ E I+ KR+  G +EY +KWKG++   NTWEPE N+
Sbjct: 21 YAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNI 58

>pdb|3G7L|A Chain A, Chromodomain Of Chp1 In Complex With Histone H3k9me3 Peptide Length = 61

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 27 FSVETILDKRI-VNGKIEYLLKWKGYSDDDNTWEPEENL 64
          + VE IL  R+  NG  EY +KW GY   DNTWEPE+NL
Sbjct: 8  YEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNL 46

>pdb|2RSN|A Chain A, Solution Structure Of The Chromodomain Of Chp1 In Complex With H3k9me3 Peptide Length = 75

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 27 FSVETILDKRI-VNGKIEYLLKWKGYSDDDNTWEPEENL 64
          + VE IL  R+  NG  EY +KW GY   DNTWEPE+NL
Sbjct: 22 YEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNL 60

>pdb|4FT2|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex H3(1-15)k9me2 Peptide And Sah Length = 784

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 42  IEYLLKWKGYSDDDNTWEPEENL-DCPDLIANFIH 75
           I + ++W+GY  +++TWEP +NL DCP  I  F+ 
Sbjct: 332 IYFKVQWEGYGPEEDTWEPIDNLSDCPQKIREFVQ 366

>pdb|4FSX|A Chain A, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In Complex With Sah Length = 784

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 42  IEYLLKWKGYSDDDNTWEPEENL-DCPDLIANFIH 75
           I + ++W+GY  +++TWEP +NL DCP  I  F+ 
Sbjct: 332 IYFKVQWEGYGPEEDTWEPIDNLSDCPQKIREFVQ 366

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	77
3f2u_A	55	Chromobox protein homolog 1; human chromobox homol	5e-26
3fdt_A	59	Chromobox protein homolog 5; chromobox homolog5, C	1e-25
2k1b_A	73	Chromobox protein homolog 7; alpha/beta protein, c	1e-25
1pdq_A	72	Polycomb protein; methyllysine, chromodomain, poly	2e-25
1q3l_A	69	Heterochromatin protein 1; chromodomain, HP1, chro	8e-25
1ap0_A	73	Modifier protein 1; chromatin-binding, protein int	8e-25
2dnv_A	64	Chromobox protein homolog 8; chromo domain, histon	2e-24
3h91_A	54	Chromobox protein homolog 2; human chromobox homol	2e-24
1pfb_A	55	Polycomb protein; chromatin, histone methylation,	3e-24
3mts_A	64	Histone-lysine N-methyltransferase SUV39H1; histon	6e-24
3i91_A	54	Chromobox protein homolog 8; chromobox homolog 8,	1e-23
2kvm_A	74	Chromobox protein homolog 7; histone modification,	1e-23
3lwe_A	62	M-phase phosphoprotein 8; MPP8, structural genomic	2e-23
2d9u_A	74	Chromobox protein homolog 2 (isoform 2); chromobox	3e-23
2dnt_A	78	Chromodomain protein, Y chromosome-like, isoform B	4e-22
3g7l_A	61	Chromo domain-containing protein 1; chromodomain,	2e-21
1g6z_A	70	CLR4 protein; transferase; NMR {Schizosaccharomyce	7e-20
1x3p_A	54	Cpsrp43; chromo-2 domain, chloroplasts, LHCP, prot	2e-10
2epb_A	68	Chromodomain-helicase-DNA-binding protein 6; struc	3e-07
2ee1_A	64	Chromodomain helicase-DNA-binding protein 4; EC 3.	6e-07
2b2y_C	115	CHD-1, chromodomain-helicase-DNA-binding protein 1	5e-06
2b2y_A	187	CHD-1, chromodomain-helicase-DNA-binding protein 1	5e-06
2b2y_A	187	CHD-1, chromodomain-helicase-DNA-binding protein 1	1e-04
3mwy_W	800	Chromo domain-containing protein 1; SWI2/SNF2 ATPa	2e-05
2h1e_A	177	Chromo domain protein 1; CHD1, tandem chromodomain	3e-05
2h1e_A	177	Chromo domain protein 1; CHD1, tandem chromodomain	4e-05

>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A* Length = 55

 Score = 89.3 bits (222), Expect = 5e-26
 Identities = 37/49 (75%), Positives = 44/49 (89%)

Query: 25 AEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
           E+ VE +LD+R+V GK+EYLLKWKG+SD+DNTWEPEENLDCPDLIA F
Sbjct: 1  GEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEF 49

>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural GENO structural genomics consortium, SGC, centromere, nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens} Length = 59

 Score = 88.5 bits (220), Expect = 1e-25
 Identities = 32/50 (64%), Positives = 44/50 (88%)

Query: 24 GAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
          G E+ VE +LD+R+V G++EYLLKWKG+S++ NTWEPE+NLDCP+LI+ F
Sbjct: 1  GEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEF 50

>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin regulator, nucleus, repressor, transcription, transcription regulation; NMR {Homo sapiens} PDB: 2l12_A* 2l1b_A* Length = 73

 Score = 88.7 bits (220), Expect = 1e-25
 Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 3/64 (4%)

Query: 10 TSSTPPAEVAPEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDL 69
          +S         E+    F+VE+I  KR+  GK+EYL+KWKG+    +TWEPEE++  P L
Sbjct: 8  SSGRENLYFQGEQV---FAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRL 64

Query: 70 IANF 73
          +  +
Sbjct: 65 VMAY 68

>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine methylation, trimethyllysine, cation-PI, chromo, structural protein; HET: M3L; 1.76A {Drosophila melanogaster} SCOP: b.34.13.2 Length = 72

 Score = 88.3 bits (219), Expect = 2e-25
 Identities = 20/65 (30%), Positives = 31/65 (47%)

Query: 9  PTSSTPPAEVAPEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPD 68
                      +     ++ E I+ KR+  G +EY +KWKG++   NTWEPE N+    
Sbjct: 3  KHHHHHHDNATDDPVDLVYAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNILDRR 62

Query: 69 LIANF 73
          LI  +
Sbjct: 63 LIDIY 67

>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A* Length = 69

 Score = 86.7 bits (215), Expect = 8e-25
 Identities = 31/59 (52%), Positives = 40/59 (67%)

Query: 15 PAEVAPEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
                EEE  E++VE I+D+R+  G +EY LKWKGY + +NTWEPE NLDC DLI  +
Sbjct: 5  HHHHHAEEEEEEYAVEKIIDRRVRKGMVEYYLKWKGYPETENTWEPENNLDCQDLIQQY 63

>1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif, alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB: 1guw_A* Length = 73

 Score = 86.7 bits (215), Expect = 8e-25
 Identities = 41/57 (71%), Positives = 48/57 (84%)

Query: 17 EVAPEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
          E   EEE  E+ VE +LD+R+V GK+EYLLKWKG+SD+DNTWEPEENLDCPDLIA F
Sbjct: 4  EEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEF 60

>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2 Length = 64

 Score = 85.9 bits (213), Expect = 2e-24
 Identities = 24/55 (43%), Positives = 35/55 (63%)

Query: 19 APEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
          +       F+ E +L +RI  G++EYL+KWKG+S   +TWEPEEN+    L+A F
Sbjct: 3  SGSSGERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAF 57

>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} PDB: 2k28_A 3i8z_A Length = 54

 Score = 85.4 bits (212), Expect = 2e-24
 Identities = 25/48 (52%), Positives = 34/48 (70%)

Query: 26 EFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
           F+ E IL KR+  GK+EYL+KW+G+S   N+WEPEEN+  P L+  F
Sbjct: 3  VFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAF 50

>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2 Length = 55

 Score = 84.7 bits (210), Expect = 3e-24
 Identities = 20/48 (41%), Positives = 30/48 (62%)

Query: 26 EFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
           ++ E I+ KR+  G +EY +KWKG++   NTWEPE N+    LI  +
Sbjct: 3  VYAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNILDRRLIDIY 50

>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens} Length = 64

 Score = 84.4 bits (209), Expect = 6e-24
 Identities = 18/45 (40%), Positives = 29/45 (64%)

Query: 29 VETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
          VE + D + +  +  YL+KW+GY D ++TWEP +NL C  ++  F
Sbjct: 3  VEYLCDYKKIREQEYYLVKWRGYPDSESTWEPRQNLKCVRILKQF 47

>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} PDB: 3gv6_A* 3i90_A* Length = 54

 Score = 83.2 bits (206), Expect = 1e-23
 Identities = 24/48 (50%), Positives = 34/48 (70%)

Query: 26 EFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
           F+ E +L +RI  G++EYL+KWKG+S   +TWEPEEN+    L+A F
Sbjct: 3  VFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAF 50

>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus} Length = 74

 Score = 83.7 bits (207), Expect = 1e-23
 Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 1/57 (1%)

Query: 17 EVAPEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
          E++   E   F+VE+I  KR+  GK+EYL+KWKG+    +TWEPEE++  P L+  +
Sbjct: 5  ELSAIGEQ-VFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAY 60

>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} PDB: 3r93_A* 3svm_A* 3qo2_A* Length = 62

 Score = 82.8 bits (205), Expect = 2e-23
 Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 26 EFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL-DCPDLIANF 73
           F VE ILD +   GK+ Y ++WKGY+ DD+TWEPE +L DC +++  F
Sbjct: 4  VFEVEKILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEF 52

>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 82.9 bits (205), Expect = 3e-23
 Identities = 25/54 (46%), Positives = 34/54 (62%)

Query: 20 PEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
                 F+ E IL KR+  GK+EYL+KW+G+S   N+WEPEEN+  P L+  F
Sbjct: 4  GSSGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAF 57

>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2 Length = 78

 Score = 80.2 bits (198), Expect = 4e-22
 Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 5/64 (7%)

Query: 12 STPPAEVAPEEEGAEFSVETILDKRIV-NGKIEYLLKWKGYSDDDNTWEPEENL-DCPDL 69
          S+  + +A EE    + VE I+DKR    GK EYL++WKGY  +D+TWEPE++L +C + 
Sbjct: 2  SSGSSGMASEEL---YEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEY 58

Query: 70 IANF 73
          I +F
Sbjct: 59 IHDF 62

>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, silencing, cell cycle, chromosome partition, DNA-binding, nucleus; HET: M3L; 2.20A {Schizosaccharomyces pombe} Length = 61

 Score = 78.1 bits (193), Expect = 2e-21
 Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 21 EEEGAEFSVETILDKRIV-NGKIEYLLKWKGYSDDDNTWEPEENL-DCPDLIANF 73
          E +   + VE IL  R+  NG  EY +KW GY   DNTWEPE+NL     ++  +
Sbjct: 2  ETDADVYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLFGAEKVLKKW 56

>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP: b.34.13.2 Length = 70

 Score = 74.4 bits (183), Expect = 7e-20
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 20 PEEEGAEFSVETILDKRIV--NGKIEYLLKWKGYSDDDNTWEPEENL-DCPDLIANF 73
             +  E+ VE I+D+++        Y ++W  YS   +TWEP ENL  C  ++A +
Sbjct: 2  SSPKQEEYEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLSGCSAVLAEW 58

>1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein translocation, unknown function; NMR {Arabidopsis thaliana} SCOP: b.34.13.2 Length = 54

 Score = 50.0 bits (119), Expect = 2e-10
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 5/47 (10%)

Query: 29 VETILDKRIV--NGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
           E+++ KR+      IEYL+KW   SD   TWEP++N+D   L+  +
Sbjct: 3  AESVIGKRVGDDGKTIEYLVKWTDMSDA--TWEPQDNVD-STLVLLY 46

>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 42.2 bits (99), Expect = 3e-07
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 7/51 (13%)

Query: 29 VETILDKRIV------NGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
          V+ IL+               YL+KW     +++TWE EE++D P  +  F
Sbjct: 14 VDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELEEDVD-PAKVKEF 63

>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP- dependent helicase CHD4, CHD-4, MI-2 autoantigen 218 kDa protein, MI2-beta; NMR {Homo sapiens} Length = 64

 Score = 41.4 bits (97), Expect = 6e-07
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 13 TPPAEVAPEEEGAEFSVETILDKRIV-NGKIEYLLKWKGYSDDDNTWEPEEN--LDCPDL 69
          +  +   PE       +  IL+  +   G + YL+KW+    D  +WE E+    D    
Sbjct: 2  SSGSSGKPEW----MMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESEDVEIQDYDLF 57

Query: 70 IANF 73
            ++
Sbjct: 58 KQSY 61

>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C Length = 115

 Score = 40.1 bits (93), Expect = 5e-06
 Identities = 17/32 (53%), Positives = 22/32 (68%)

Query: 33 LDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL 64
           +K    G+I+YL+KWKG+S   NTWE EE L
Sbjct: 49 FEKNKEPGEIQYLIKWKGWSHIHNTWETEETL 80

>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A* Length = 187

 Score = 40.7 bits (94), Expect = 5e-06
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 30 ETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPD 68
              +K    G+I+YL+KWKG+S   NTWE EE L   +
Sbjct: 46 NAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQN 84

>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A* Length = 187

 Score = 36.9 bits (84), Expect = 1e-04
 Identities = 12/78 (15%), Positives = 23/78 (29%), Gaps = 5/78 (6%)

Query: 1   MSEETPAAPTSSTPPAEVAPEEEGAEFSVETILDKRIVN---GKIEYLLKWKGYSDDDNT 57
           +   +P          E+  +       V  I+         G  +Y  KW+G    + +
Sbjct: 105 LKNASPEDVEYYNCQQELTDDLHKQYQIVGRIIAHSNQKSAAGYPDYYCKWQGLPYSECS 164

Query: 58  WEPEENL--DCPDLIANF 73
           WE    +       I  +
Sbjct: 165 WEDGALISKKFQACIDEY 182

>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800

 Score = 39.4 bits (92), Expect = 2e-05
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 17 EVAPEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLD 65
           +    E  +   +T+ D        E+L+KW   S   NTWE  E++ 
Sbjct: 47 RLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIG 95

>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A Length = 177

 Score = 38.8 bits (89), Expect = 3e-05
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 20 PEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCP 67
             E  +   +T+ D        E+L+KW   S   NTWE  E++   
Sbjct: 25 TSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQV 72

>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A Length = 177

 Score = 38.4 bits (88), Expect = 4e-05
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 17  EVAPEEEGAEFSVETILDKRIV-----NGKIEYLLKWKGYSDDDNTWEPEENL--DCPDL 69
           E   +E       E I+D +         +++YL+KW+  + D+ TWE   ++    P+ 
Sbjct: 111 ERRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQ 170

Query: 70  IANF 73
           + +F
Sbjct: 171 VKHF 174

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	77
3i91_A	54	Chromobox protein homolog 8; chromobox homolog 8,	99.89
1ap0_A	73	Modifier protein 1; chromatin-binding, protein int	99.89
3h91_A	54	Chromobox protein homolog 2; human chromobox homol	99.89
2rso_A	92	Chromatin-associated protein SWI6; chromodomain, s	99.88
2rsn_A	75	Chromo domain-containing protein 1; chromodomain,	99.88
3f2u_A	55	Chromobox protein homolog 1; human chromobox homol	99.88
2k1b_A	73	Chromobox protein homolog 7; alpha/beta protein, c	99.88
3fdt_A	59	Chromobox protein homolog 5; chromobox homolog5, C	99.88
3lwe_A	62	M-phase phosphoprotein 8; MPP8, structural genomic	99.87
1q3l_A	69	Heterochromatin protein 1; chromodomain, HP1, chro	99.87
2dnv_A	64	Chromobox protein homolog 8; chromo domain, histon	99.87
3g7l_A	61	Chromo domain-containing protein 1; chromodomain,	99.87
1pdq_A	72	Polycomb protein; methyllysine, chromodomain, poly	99.87
1pfb_A	55	Polycomb protein; chromatin, histone methylation,	99.87
2d9u_A	74	Chromobox protein homolog 2 (isoform 2); chromobox	99.86
2kvm_A	74	Chromobox protein homolog 7; histone modification,	99.86
1g6z_A	70	CLR4 protein; transferase; NMR {Schizosaccharomyce	99.84
3mts_A	64	Histone-lysine N-methyltransferase SUV39H1; histon	99.84
2dnt_A	78	Chromodomain protein, Y chromosome-like, isoform B	99.83
4hae_A	81	CDY-like 2, chromodomain Y-like protein 2; protein	99.82
2epb_A	68	Chromodomain-helicase-DNA-binding protein 6; struc	99.73
2ee1_A	64	Chromodomain helicase-DNA-binding protein 4; EC 3.	99.64
1x3p_A	54	Cpsrp43; chromo-2 domain, chloroplasts, LHCP, prot	99.64
2b2y_C	115	CHD-1, chromodomain-helicase-DNA-binding protein 1	99.5
2h1e_A	177	Chromo domain protein 1; CHD1, tandem chromodomain	99.45
2b2y_A	187	CHD-1, chromodomain-helicase-DNA-binding protein 1	99.42
3kup_A	65	Chromobox protein homolog 3; chromo shadow domain,	99.26
2fmm_A	74	Chromobox protein homolog 1; ENT domain, chromo sh	99.18
3p7j_A	87	Heterochromatin protein 1; chromo shadow domain, g	99.18
3i3c_A	75	Chromobox protein homolog 5; CBX5, chromo shadow d	99.17
3mwy_W	800	Chromo domain-containing protein 1; SWI2/SNF2 ATPa	99.12
3q6s_A	78	Chromobox protein homolog 1; incenp, heterochromat	99.12
2h1e_A	177	Chromo domain protein 1; CHD1, tandem chromodomain	99.06
2b2y_A	187	CHD-1, chromodomain-helicase-DNA-binding protein 1	99.05
1e0b_A	68	SWI6 protein; chromatin-binding, chromodomain, sha	98.23
3mwy_W	800	Chromo domain-containing protein 1; SWI2/SNF2 ATPa	98.12
2ro0_A	92	Histone acetyltransferase ESA1; HAT, chromodomain,	96.68
2lcc_A	76	AT-rich interactive domain-containing protein 4A;	96.59
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	96.51
2lrq_A	85	Protein MRG15, NUA4 complex subunit EAF3 homolog;	94.91
2f5k_A	102	MORF-related gene 15 isoform 1; beta barrel, gene	95.79
2rnz_A	94	Histone acetyltransferase ESA1; HAT, chromodomain,	95.76
2eko_A	87	Histone acetyltransferase htatip; chromo domain, h	95.75
2bud_A	92	Males-absent on the first protein; transferase, MO	95.12
1wgs_A	133	MYST histone acetyltransferase 1; tudor domain, MY	94.75
3m9q_A	101	Protein MALE-specific lethal-3; chromodomain, MSL3	93.82
3m9p_A	110	MALE-specific lethal 3 homolog; chromodomain, MSL3	92.25
2eqm_A	88	PHD finger protein 20-like 1; structural genomics,	91.49
3oa6_A	110	MALE-specific lethal 3 homolog; chromodomain, MSL3	90.03

>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} SCOP: b.34.13.2 PDB: 3gv6_A* 3i90_A*

Probab=99.89  E-value=1.3e-23  Score=112.64  Aligned_cols=53  Identities=45%  Similarity=0.844  Sum_probs=50.3

Q ss_pred             CccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467          24 GAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI   76 (77)
Q Consensus        24 ~~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~   76 (77)
                      +++|+|++||++|..+|+++|||||+||+..++||||.+||.|+++|.+|++|
T Consensus         1 e~~y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~~~~li~~f~~R   53 (54)
T 3i91_A            1 ERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEER   53 (54)
T ss_dssp             -CEEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGBCCHHHHHHHHHC
T ss_pred             CCeEEEEEEEEEEEeCCcEEEEEEEeCCCcccCcccchhHCCCHHHHHHHHhc
Confidence            36899999999999999999999999999999999999999999999999986

>1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif, alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB: 1guw_A*

Probab=99.89  E-value=3.3e-23  Score=117.09  Aligned_cols=60  Identities=68%  Similarity=1.251  Sum_probs=55.1

Q ss_pred             CCCCCCCCccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467          17 EVAPEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI   76 (77)
Q Consensus        17 ~~~~~~~~~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~   76 (77)
                      ..+.++++++|+|++||++|..+|.++|||||+||+..++||||.+||+|+++|.+|.++
T Consensus         4 ~~~~~~~~~ey~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nL~~~~li~~f~~~   63 (73)
T 1ap0_A            4 EEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQS   63 (73)
T ss_dssp             SSSCCSCSSCCEEEEEEEEEECSSSEEEEEEEESSSSCCCEEEETTTCCCHHHHHHHTTT
T ss_pred             CCcccCCCceEEEEEEEEEEEeCCeEEEEEEECCCCCccCcEeeHHHCCCHHHHHHHHHH
Confidence            344566788999999999999999999999999999999999999999999999999875

>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} SCOP: b.34.13.2 PDB: 2k28_A 3i8z_A

Probab=99.89  E-value=2.2e-23  Score=111.74  Aligned_cols=53  Identities=47%  Similarity=0.906  Sum_probs=49.9

Q ss_pred             CccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467          24 GAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI   76 (77)
Q Consensus        24 ~~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~   76 (77)
                      +++|+|++||++|..+|+++|||||+||+..++||||.+||.|+++|.+|++|
T Consensus         1 e~~y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~~~~li~~f~~r   53 (54)
T 3h91_A            1 EQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKK   53 (54)
T ss_dssp             CCEEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGBCSHHHHHHHHC-
T ss_pred             CCceEEEEEEEEEEeCCcEEEEEEEeCCCCcCCCeecHhHCCCHHHHHHHHhc
Confidence            46899999999999999999999999999999999999999999999999876

>2rso_A Chromatin-associated protein SWI6; chromodomain, silencing, chromosomal protein, Met transcription; NMR {Schizosaccharomyces pombe}

Probab=99.88  E-value=1.3e-22  Score=119.13  Aligned_cols=56  Identities=46%  Similarity=0.910  Sum_probs=50.3

Q ss_pred             CCCCccEEEEEEEeEEE--ECCeEEEEEEecCCCC-CCCCcccCCCC-CcHHHHHHHHHh
Q psy5467          21 EEEGAEFSVETILDKRI--VNGKIEYLLKWKGYSD-DDNTWEPEENL-DCPDLIANFIHI   76 (77)
Q Consensus        21 ~~~~~~y~ve~Il~~r~--~~~~~~ylVkW~G~~~-~~~TWE~~~~l-~~~~ll~~y~~~   76 (77)
                      ..++++|+|++||++|.  ++|+++|||||+||+. .++||||+.|| +|++||.+|+++
T Consensus        25 ~~~~eey~VE~Il~~r~~~~~g~~~YlVkWkGy~~~~~~TWEP~~nl~~c~~li~~f~~~   84 (92)
T 2rso_A           25 EEEEDEYVVEKVLKHRMARKGGGYEYLLKWEGYDDPSDNTWSSEADCSGCKQLIEAYWNE   84 (92)
T ss_dssp             CCCCCCCCEEEEEEEEECTTSSCEEEEEEETTCCCCTTSEEECGGGGGTSHHHHHHHHHH
T ss_pred             cCcCceEEEEEEEEEEeecCCCEEEEEEEEccCCCcccCccccHHHHhhHHHHHHHHHHH
Confidence            34667999999999998  4689999999999984 88999999999 899999999975

>2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe}

Probab=99.88  E-value=9.8e-23  Score=115.76  Aligned_cols=55  Identities=40%  Similarity=0.760  Sum_probs=50.7

Q ss_pred             CCCccEEEEEEEeEEEE-CCeEEEEEEecCCCCCCCCcccCCCC-CcHHHHHHHHHh
Q psy5467          22 EEGAEFSVETILDKRIV-NGKIEYLLKWKGYSDDDNTWEPEENL-DCPDLIANFIHI   76 (77)
Q Consensus        22 ~~~~~y~ve~Il~~r~~-~~~~~ylVkW~G~~~~~~TWE~~~~l-~~~~ll~~y~~~   76 (77)
                      +++++|+|++||++|.. +|+++|||||+||+..++||||++|| +|+++|.+|+++
T Consensus        17 ~~~e~yeVE~Il~~r~~~~g~~~YlVkWkGy~~~~~TWEp~~nl~~~~~li~~f~~~   73 (75)
T 2rsn_A           17 TDADVYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLFGAEKVLKKWKKR   73 (75)
T ss_dssp             CGGGCEEEEEEEEEEECSSSCEEEEEEEESSCGGGCEEEEGGGGTTTHHHHHHHHHH
T ss_pred             CCCceEEEEEEEEEEEcCCCcEEEEEEECCCCCcCCeeecHHHccChHHHHHHHHHh
Confidence            46679999999999985 68999999999999999999999999 799999999976

>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A*

Probab=99.88  E-value=4.1e-23  Score=111.09  Aligned_cols=52  Identities=71%  Similarity=1.385  Sum_probs=49.1

Q ss_pred             ccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467          25 AEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI   76 (77)
Q Consensus        25 ~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~   76 (77)
                      ++|+|++||++|..+|+++|||||+||+..++||||++||+|+++|.+|+++
T Consensus         1 gey~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~~~~li~~f~~~   52 (55)
T 3f2u_A            1 GEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQS   52 (55)
T ss_dssp             CCCCEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGCCCHHHHHHHHC-
T ss_pred             CcEEEEEEEEEEEeCCeEEEEEEEEeCCCccCCeeEHHHCCCHHHHHHHHHH
Confidence            3699999999999999999999999999999999999999999999999875

>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin regulator, nucleus, repressor, transcription, transcription regulation; NMR {Homo sapiens} PDB: 2l12_A* 2l1b_A*

Probab=99.88  E-value=3.5e-23  Score=117.10  Aligned_cols=58  Identities=40%  Similarity=0.714  Sum_probs=51.0

Q ss_pred             CCCCCCccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467          19 APEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI   76 (77)
Q Consensus        19 ~~~~~~~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~   76 (77)
                      ...+++++|+|++||++|..+|+++|||||+||+..++||||++||.|+++|.+|.++
T Consensus        14 ~~~~~~~eyeVEkIld~r~~~g~~~YlVKWkGy~~~~~TWEp~enL~~~~li~~F~~~   71 (73)
T 2k1b_A           14 LYFQGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK   71 (73)
T ss_dssp             -----CCCCCCSEEEEEEEETTEEEEEEECTTCCGGGCCEEETTSCSCHHHHHHHHTS
T ss_pred             cccCCCceEEEEEEEEEEEcCCcEEEEEEECCCCcccCeecchHHCCCHHHHHHHHHh
Confidence            3345778999999999999999999999999999999999999999999999999875

>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural GENO structural genomics consortium, SGC, centromere, nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens}

Probab=99.88  E-value=4e-23  Score=112.56  Aligned_cols=52  Identities=60%  Similarity=1.287  Sum_probs=49.5

Q ss_pred             ccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467          25 AEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI   76 (77)
Q Consensus        25 ~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~   76 (77)
                      ++|+|++||++|..+|.++|||||+||+..++||||.+||+|+++|.+|+++
T Consensus         2 eey~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~~~~li~~f~~~   53 (59)
T 3fdt_A            2 EEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKK   53 (59)
T ss_dssp             CEEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGEECHHHHHHHHC-
T ss_pred             CeEEEEEEEEEEEeCCeEEEEEEEeCCCcccCCccchhHCCCHHHHHHHHHh
Confidence            6899999999999999999999999999999999999999999999999875

>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} SCOP: b.34.13.0 PDB: 3r93_A* 3svm_A* 3qo2_A*

Probab=99.87  E-value=3.7e-23  Score=113.68  Aligned_cols=54  Identities=44%  Similarity=0.912  Sum_probs=51.5

Q ss_pred             CCccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCC-CcHHHHHHHHHh
Q psy5467          23 EGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL-DCPDLIANFIHI   76 (77)
Q Consensus        23 ~~~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l-~~~~ll~~y~~~   76 (77)
                      ++++|+|++||++|..+|.++|||||+||+..++||||++|| +|+++|.+|+++
T Consensus         1 ge~~y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~~~~~li~~f~~~   55 (62)
T 3lwe_A            1 GEDVFEVEKILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEFRKK   55 (62)
T ss_dssp             CCCSCCEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEHHHHTTCHHHHHHHHHH
T ss_pred             CCceEEEEEEEEEEEcCCeEEEEEEEeCCCCcCCCeeeHhHhhccHHHHHHHHHh
Confidence            467899999999999999999999999999999999999999 899999999976

>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A*

Probab=99.87  E-value=9.5e-23  Score=114.21  Aligned_cols=55  Identities=55%  Similarity=1.099  Sum_probs=49.5

Q ss_pred             CCCccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467          22 EEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI   76 (77)
Q Consensus        22 ~~~~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~   76 (77)
                      .++++|+|++||++|..+|+++|||||+||+..++||||++||+|+++|.+|.++
T Consensus        12 ~~~~ey~VEkIld~R~~~g~~eYlVKWkGy~~~~~TWEp~enL~c~~lI~~F~~~   66 (69)
T 1q3l_A           12 EEEEEYAVEKIIDRRVRKGMVEYYLKWKGYPETENTWEPENNLDCQDLIQQYEAS   66 (69)
T ss_dssp             ----CEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGEECHHHHHHHHHH
T ss_pred             cCCCcEEEEEEEEEEEECCeEEEEEEEcCCCcccCCccchHHCCCHHHHHHHHHH
Confidence            4667999999999999999999999999999999999999999999999999875

>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2

Probab=99.87  E-value=7e-23  Score=113.15  Aligned_cols=56  Identities=43%  Similarity=0.781  Sum_probs=52.3

Q ss_pred             CCCCccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467          21 EEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI   76 (77)
Q Consensus        21 ~~~~~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~   76 (77)
                      .+++++|+|++||++|..+|+++|||||+||+..++||||++||.|+++|.+|+++
T Consensus         5 ~~~~~ey~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~~l~~~~li~~f~~~   60 (64)
T 2dnv_A            5 SSGERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFESG   60 (64)
T ss_dssp             SSSCCCCCCCCEEEEEESSSSEEEEECCSSCCCSSCCEEETTTCCCHHHHHHHHCC
T ss_pred             cCCCceEEEEEEEEEEEeCCcEEEEEEECCCCcccCCccCHhHCCCHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999888999999876

>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, silencing, cell cycle, chromosome partition, DNA-binding, nucleus; HET: M3L; 2.20A {Schizosaccharomyces pombe}

Probab=99.87  E-value=9.2e-23  Score=111.78  Aligned_cols=56  Identities=39%  Similarity=0.672  Sum_probs=49.8

Q ss_pred             CCCCccEEEEEEEeEEEECCeE-EEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467          21 EEEGAEFSVETILDKRIVNGKI-EYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI   76 (77)
Q Consensus        21 ~~~~~~y~ve~Il~~r~~~~~~-~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~   76 (77)
                      .+++++|+|++||++|..+|.. +|||||+||+..++||||++||.|+++|.+|+++
T Consensus         2 E~~~~ey~VE~Il~~r~~~g~~~~YlVkWkGy~~~~~TWEp~~nl~~~~li~~~~~~   58 (61)
T 3g7l_A            2 ETDADVYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLFGAEKVLKKWKK   58 (61)
T ss_dssp             ---CCEEEEEEEEEEEECTTSCEEEEEEETTSCGGGCEEEEGGGGTBCHHHHHHHHH
T ss_pred             CCCCcEEEEEEEEEEEEECCCEEEEEEEEeCCCCcCCceeeHhHCCCHHHHHHHHHH
Confidence            3578899999999999988877 9999999999999999999999999999998865

>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine methylation, trimethyllysine, cation-PI, chromo, structural protein; HET: M3L; 1.76A {Drosophila melanogaster} SCOP: b.34.13.2

Probab=99.87  E-value=1.4e-22  Score=114.35  Aligned_cols=56  Identities=36%  Similarity=0.676  Sum_probs=49.7

Q ss_pred             CCCCccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467          21 EEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI   76 (77)
Q Consensus        21 ~~~~~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~   76 (77)
                      .+++++|+|++||++|..+|.++|||||+||+..++||||++||.|+++|.+|.++
T Consensus        15 ~~~~~eyeVEkIld~r~~~g~~~YlVKWkGy~~~~nTWEP~enL~~~~lI~~F~~~   70 (72)
T 1pdq_A           15 DPVDLVYAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNILDRRLIDIYEQT   70 (72)
T ss_dssp             ---CEEEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGCCSTHHHHHHC--
T ss_pred             CCCCceEEEEEEEEEEEeCCcEEEEEEECCCCCccCeecchHHCCCHHHHHHHHHh
Confidence            34678999999999999999999999999999999999999999999999999764

>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2

Probab=99.87  E-value=2.2e-22  Score=108.14  Aligned_cols=53  Identities=38%  Similarity=0.713  Sum_probs=50.1

Q ss_pred             CccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467          24 GAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI   76 (77)
Q Consensus        24 ~~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~   76 (77)
                      +++|+|++||++|..+|.++|||||+||+..++||||++||.|+++|.+|.++
T Consensus         1 d~~y~VE~Il~~r~~~g~~~YlVKWkgy~~~~~TWEp~~~l~~~~li~~f~~~   53 (55)
T 1pfb_A            1 DLVYAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNILDRRLIDIYEQT   53 (55)
T ss_dssp             CEEEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGCCSTHHHHHHHTS
T ss_pred             CCEEEEEEEEEEEEeCCeEEEEEEEcCCCCccCcEeEHHHCCCHHHHHHHHHh
Confidence            36899999999999999999999999999999999999999999999999864

>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=7e-22  Score=111.89  Aligned_cols=56  Identities=45%  Similarity=0.855  Sum_probs=52.6

Q ss_pred             CCCCccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467          21 EEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI   76 (77)
Q Consensus        21 ~~~~~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~   76 (77)
                      .+++++|+|++||++|..+|.++|||||+||+..++||||++||.|+++|.+|+++
T Consensus         5 ~~~~~ey~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nl~~~~li~~f~~~   60 (74)
T 2d9u_A            5 SSGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKK   60 (74)
T ss_dssp             CCCCCCCCEEEEEEEEEETTEEEEEEEETTSCTTTCEEEEGGGCCCHHHHHHHHHH
T ss_pred             cCCCccEEEEEEEEEEEeCCcEEEEEEECCCCCccCccccHHHCCCHHHHHHHHHh
Confidence            45678999999999999999999999999999999999999999889999999875

>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus}

Probab=99.86  E-value=9.8e-22  Score=111.26  Aligned_cols=57  Identities=40%  Similarity=0.751  Sum_probs=53.0

Q ss_pred             CCCCCccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467          20 PEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI   76 (77)
Q Consensus        20 ~~~~~~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~   76 (77)
                      ..+++++|+|++||++|..+|.++|||||+||+..+|||||.+||.|+++|.+|.++
T Consensus         7 ~~~~~~~y~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~~L~~~~li~~f~~~   63 (74)
T 2kvm_A            7 SAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK   63 (74)
T ss_dssp             SSCCCCCCCEEEEEEEEEETTEEEEEEEETTSCGGGCEEEETTTCSCHHHHHHHHHH
T ss_pred             ccCCCccEEEEEEEEEEEeCCcEEEEEEEcCCCCccCeEeeHHHCCCHHHHHHHHHH
Confidence            345778999999999999999999999999999999999999999999999999875

>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP: b.34.13.2

Probab=99.84  E-value=1.9e-22  Score=113.12  Aligned_cols=56  Identities=34%  Similarity=0.805  Sum_probs=52.0

Q ss_pred             CCCCccEEEEEEEeEEEEC-CeEE-EEEEecCCCCCCCCcccCCCC-CcHHHHHHHHHh
Q psy5467          21 EEEGAEFSVETILDKRIVN-GKIE-YLLKWKGYSDDDNTWEPEENL-DCPDLIANFIHI   76 (77)
Q Consensus        21 ~~~~~~y~ve~Il~~r~~~-~~~~-ylVkW~G~~~~~~TWE~~~~l-~~~~ll~~y~~~   76 (77)
                      ++++++|+|++||++|..+ |+++ |||||+||+..++||||.+|| +|+++|.+|+++
T Consensus         3 ~~~~~ey~VE~Il~~r~~~~g~~~~YlVKWkGy~~~~~TWEp~enL~~~~~li~~f~~~   61 (70)
T 1g6z_A            3 SPKQEEYEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLSGCSAVLAEWKRR   61 (70)
T ss_dssp             CCSSCSSCCCSCSEEECCTTSSCCEEEECCTTTTSSCCEEECGGGGSSCHHHHHHHHHH
T ss_pred             cCCCceEEEEEEEEEEEcCCCcEEEEEEEECCCCCCCCceecHHHHhhhHHHHHHHHHh
Confidence            4577899999999999988 8888 999999999999999999999 999999999875

>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}

Probab=99.84  E-value=1.7e-21  Score=107.69  Aligned_cols=50  Identities=36%  Similarity=0.818  Sum_probs=47.6

Q ss_pred             EEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHhC
Q psy5467          28 SVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHIV   77 (77)
Q Consensus        28 ~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~~   77 (77)
                      +|++||++|..+|.++|||||+||+..++||||++||.|+++|.+|++++
T Consensus         2 EVE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nl~c~~li~~f~~~~   51 (64)
T 3mts_A            2 EVEYLCDYKKIREQEYYLVKWRGYPDSESTWEPRQNLKCVRILKQFHKDL   51 (64)
T ss_dssp             CEEEEEEEEECSSCEEEEEEETTSCGGGCEEEEGGGCCCHHHHHHHHHHH
T ss_pred             CceEEEEEEEeCCeEEEEEEEecCCCcCCcEeEHHHCCCHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999863

>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2

Probab=99.83  E-value=1.5e-21  Score=111.41  Aligned_cols=55  Identities=45%  Similarity=0.955  Sum_probs=51.0

Q ss_pred             CCCccEEEEEEEeEEE-ECCeEEEEEEecCCCCCCCCcccCCCC-CcHHHHHHHHHh
Q psy5467          22 EEGAEFSVETILDKRI-VNGKIEYLLKWKGYSDDDNTWEPEENL-DCPDLIANFIHI   76 (77)
Q Consensus        22 ~~~~~y~ve~Il~~r~-~~~~~~ylVkW~G~~~~~~TWE~~~~l-~~~~ll~~y~~~   76 (77)
                      +++++|+|++||++|. .+|+++|||||+||+..++|||+++|| +|+++|.+|+++
T Consensus         9 ~~~~~y~VE~Il~~r~~~~g~~~YlVKWkGy~~~~~TWEp~~~l~~~~~li~~f~~~   65 (78)
T 2dnt_A            9 ASEELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRR   65 (78)
T ss_dssp             CSSCSCCCCCEEEEEECTTSCEEEEECBTTBCGGGCEEEETTTCTTCHHHHHHHHHH
T ss_pred             CCCceEEEEEEEEEEEcCCCcEEEEEEECCCCccCCceecHHHHHhHHHHHHHHHhh
Confidence            4678999999999998 578999999999999999999999999 899999999875

>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}

Probab=99.82  E-value=3e-22  Score=115.21  Aligned_cols=55  Identities=45%  Similarity=0.976  Sum_probs=49.6

Q ss_pred             CCCccEEEEEEEeEEE-ECCeEEEEEEecCCCCCCCCcccCCCC-CcHHHHHHHHHh
Q psy5467          22 EEGAEFSVETILDKRI-VNGKIEYLLKWKGYSDDDNTWEPEENL-DCPDLIANFIHI   76 (77)
Q Consensus        22 ~~~~~y~ve~Il~~r~-~~~~~~ylVkW~G~~~~~~TWE~~~~l-~~~~ll~~y~~~   76 (77)
                      ..+++|+|++||++|. .+|+++|||||+||+..++||||++|| +|++||.+|.++
T Consensus        19 ~~~e~yeVE~Ild~R~~~~g~~~YlVKWkGy~~~~~TWEp~~nl~~~~~li~~f~~~   75 (81)
T 4hae_A           19 ASGDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGL   75 (81)
T ss_dssp             TTSCEEEEEEEEEEEECTTSCEEEEEEETTCCGGGCEEEEGGGEEECCCCCCTTCSS
T ss_pred             CCCCEEEEEEEEEeEECCCCeEEEEEEECCCCCCCCeEEeHHHhhhhHHHHHHHHHH
Confidence            4567899999999998 468999999999999999999999999 799999998754

>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.73  E-value=5.4e-18  Score=94.51  Aligned_cols=52  Identities=29%  Similarity=0.560  Sum_probs=46.2

Q ss_pred             CccEEEEEEEeEEEE----CC--eEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467          24 GAEFSVETILDKRIV----NG--KIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI   76 (77)
Q Consensus        24 ~~~y~ve~Il~~r~~----~~--~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~   76 (77)
                      .+.+.|++||++|..    +|  .++|||||+|++..++|||++++| ++++|++|+++
T Consensus         9 pe~~~VErIl~~r~~~~~~~g~~~~eYLVKWkgl~y~e~TWE~~~~l-~~~~I~~f~~r   66 (68)
T 2epb_A            9 PDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELEEDV-DPAKVKEFESL   66 (68)
T ss_dssp             SSCCCCCEEEEEEEEECSSSCCEEEEEEEECTTSCGGGCCEEETTTS-CHHHHHHHHHH
T ss_pred             CCceEEeEEEEEEecccccCCCcceEEEEEEcCCChhcCccccchhc-CHHHHHHHHHh
Confidence            456799999999964    35  899999999999999999999999 68999999876

>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP- dependent helicase CHD4, CHD-4, MI-2 autoantigen 218 kDa protein, MI2-beta; NMR {Homo sapiens}

Probab=99.64  E-value=5.5e-17  Score=89.50  Aligned_cols=53  Identities=23%  Similarity=0.518  Sum_probs=44.7

Q ss_pred             CccEEEEEEEeEEE-ECCeEEEEEEecCCCCCCCCcccCCCC--CcHHHHHHHHHh
Q psy5467          24 GAEFSVETILDKRI-VNGKIEYLLKWKGYSDDDNTWEPEENL--DCPDLIANFIHI   76 (77)
Q Consensus        24 ~~~y~ve~Il~~r~-~~~~~~ylVkW~G~~~~~~TWE~~~~l--~~~~ll~~y~~~   76 (77)
                      .+.+.|++||++|. .+|.++|||||+|++.+++|||+++..  ..++.|++|+.+
T Consensus         9 pe~~~VeRIi~~r~~~~g~~eYLVKWkgl~y~e~TWE~~~~~~~~~~~~I~~y~~~   64 (64)
T 2ee1_A            9 PEWMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESEDVEIQDYDLFKQSYWNH   64 (64)
T ss_dssp             CSSCCCCCCCEEEECTTCCEEEEECCTTSCTTTCEEEETTCCCTTHHHHHHHHHHC
T ss_pred             CCcEEEEEEEEEEecCCCCEEEEEEEcCCCcccCcccCCcccCcchHHHHHHHHhC
Confidence            36779999999998 578999999999999999999999932  445559999863

>1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein translocation, unknown function; NMR {Arabidopsis thaliana} SCOP: b.34.13.2

Probab=99.64  E-value=1.2e-18  Score=93.30  Aligned_cols=46  Identities=39%  Similarity=0.849  Sum_probs=41.7

Q ss_pred             EEEEEEeEEEEC-CeE-EEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467          28 SVETILDKRIVN-GKI-EYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI   76 (77)
Q Consensus        28 ~ve~Il~~r~~~-~~~-~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~   76 (77)
                      +|++||++|..+ |++ +|||||+||  +++||||++||. +++|.+|+++
T Consensus         2 ~VE~Ild~r~~~~g~~~~YlVKWkgy--~~~TWEp~~nL~-~~li~~f~~~   49 (54)
T 1x3p_A            2 VAESVIGKRVGDDGKTIEYLVKWTDM--SDATWEPQDNVD-STLVLLYQQQ   49 (54)
T ss_dssp             CSSCCCCBSSCSSSCCCCBCCCCSSS--SSCSCSTTCCSS-SSSHHHHTSS
T ss_pred             eEEEEEEEEEcCCCcEEEEEEEECCC--CcCCccchHHCC-HHHHHHHHHH
Confidence            578999999987 888 999999999  689999999998 9999999764

>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C

Probab=99.50  E-value=6.7e-17  Score=97.88  Aligned_cols=54  Identities=37%  Similarity=0.671  Sum_probs=46.7

Q ss_pred             CCccEEEEEE------EeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcH-----HHHHHHHHh
Q psy5467          23 EGAEFSVETI------LDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCP-----DLIANFIHI   76 (77)
Q Consensus        23 ~~~~y~ve~I------l~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~-----~ll~~y~~~   76 (77)
                      ....|+|++|      ++.|..+|..+|||||+||+..+|||||.+||.|+     .+|.+|.++
T Consensus        33 ~~~~Y~VE~i~Dp~~ildkR~~~g~~eYlVKWkG~s~~~nTWEp~enL~~~~~~g~kklenY~kk   97 (115)
T 2b2y_C           33 TTTIYAVEADGDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKK   97 (115)
T ss_dssp             GGSHHHHHHHCBTTTTCCTTSSSCEEEEEEEETTSCGGGCEEECHHHHHHHTCBCTHHHHHHHC-
T ss_pred             CCceEEEeecCCcccccccceeCCcEEEEEEECCCCchhcccCCHHHcCCccchHHHHHHHHHHH
Confidence            4568888886      88888889999999999999999999999999664     589999875

>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A

Probab=99.45  E-value=1.2e-14  Score=93.67  Aligned_cols=52  Identities=25%  Similarity=0.558  Sum_probs=46.6

Q ss_pred             ccEEEEEEEeEEE-----ECCeEEEEEEecCCCCCCCCcccCCCCC--cHHHHHHHHHh
Q psy5467          25 AEFSVETILDKRI-----VNGKIEYLLKWKGYSDDDNTWEPEENLD--CPDLIANFIHI   76 (77)
Q Consensus        25 ~~y~ve~Il~~r~-----~~~~~~ylVkW~G~~~~~~TWE~~~~l~--~~~ll~~y~~~   76 (77)
                      +.+.|++||++|.     ..+.++|||||+|++..++|||++.++.  |+++|.+|.+|
T Consensus       119 e~~~VErIi~~r~~~~~~~~~~~~YLVKWkgl~y~e~TWE~~~~~~~~~~~~I~~y~~r  177 (177)
T 2h1e_A          119 EFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQKK  177 (177)
T ss_dssp             HTTSEEEEEEEEEEECTTSCEEEEEEEEETTSCSTTCEEEEHHHHHHHCHHHHHHHTC-
T ss_pred             ccceeEEEEEEeeecccCCCCcEEEEEEeCCCCcccccccChHHhhhhHHHHHHHHHhC
Confidence            4568999999997     5789999999999999999999999993  89999999865

>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*

Probab=99.42  E-value=4.2e-14  Score=91.74  Aligned_cols=51  Identities=20%  Similarity=0.459  Sum_probs=46.7

Q ss_pred             cE-EEEEEEeEEE---ECCeEEEEEEecCCCCCCCCcccCCCC--CcHHHHHHHHHh
Q psy5467          26 EF-SVETILDKRI---VNGKIEYLLKWKGYSDDDNTWEPEENL--DCPDLIANFIHI   76 (77)
Q Consensus        26 ~y-~ve~Il~~r~---~~~~~~ylVkW~G~~~~~~TWE~~~~l--~~~~ll~~y~~~   76 (77)
                      .| .|++||++|.   ..|.++|||||+|++.+++|||++.++  .|+++|++|++|
T Consensus       129 e~~~VErIi~~r~~~~~~g~~~yLVKWkgl~Y~e~TWE~~~~i~~~~~~~I~~f~~R  185 (187)
T 2b2y_A          129 QYQIVGRIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFSR  185 (187)
T ss_dssp             HTTSEEEEEEEEEEECTTSCEEEEEEETTSCGGGCEEECHHHHHHHHHHHHHHHHHT
T ss_pred             hcceeEEEEEeeeecCCCCcEEEEEEECCCChhhCcccchhhhhhhHHHHHHHHHhh
Confidence            44 8999999998   478999999999999999999999998  589999999986

>3kup_A Chromobox protein homolog 3; chromo shadow domain, structural genomics consortium, SGC, acetylation, chromatin regulator, nucleus, phosphoprotein; 1.77A {Homo sapiens} SCOP: b.34.13.2 PDB: 1dz1_A

Probab=99.26  E-value=6.6e-13  Score=73.24  Aligned_cols=51  Identities=25%  Similarity=0.574  Sum_probs=44.7

Q ss_pred             cEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467          26 EFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI   76 (77)
Q Consensus        26 ~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~   76 (77)
                      -+++++|++.+..+|.++|||||+|++..+..+....|..||++|.+|+++
T Consensus        12 Gle~ekI~g~~~~~Gel~fLvKWKg~~~~d~Vpa~e~n~~~PqlVI~fYE~   62 (65)
T 3kup_A           12 GLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEE   62 (65)
T ss_dssp             CCCEEEEEEEECTTSSCEEEEEETTCSCCEEEEHHHHHHHCHHHHHHHHHH
T ss_pred             CCCeeEEeeEEcCCCcEEEEEEECCCChhheEEHHHHHhhChHHHHHHHHH
Confidence            468999999999999999999999998877666667777899999999864

>2fmm_A Chromobox protein homolog 1; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: b.34.13.2 PDB: 1s4z_A

Probab=99.18  E-value=1.5e-11  Score=69.25  Aligned_cols=50  Identities=22%  Similarity=0.552  Sum_probs=45.2

Q ss_pred             ccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCC--CcHHHHHHHHHh
Q psy5467          25 AEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL--DCPDLIANFIHI   76 (77)
Q Consensus        25 ~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l--~~~~ll~~y~~~   76 (77)
                      .-+++++|++.+..+|.++|||||+|++.  .+|.+...+  .||++|.+|+++
T Consensus        14 rGl~~ekI~g~~~~~Gel~fLvkWkg~d~--~dlVpa~~a~~k~Pq~VI~FYE~   65 (74)
T 2fmm_A           14 RGLEPERIIGATDSSGELMFLMKWKNSDE--ADLVPAKEANVKCPQVVISFYEE   65 (74)
T ss_dssp             GCCCEEEEEEEEEETTEEEEEEEETTCSC--CEEEEHHHHHHHCHHHHHHHHHT
T ss_pred             ccCCceEEEEEEcCCCcEEEEEEECCCCc--ccEEEHHHHhhhChHHHHHHHHH
Confidence            35899999999999999999999999865  679999888  799999999975

>3p7j_A Heterochromatin protein 1; chromo shadow domain, gene silenc epigenetics, transcription; 2.30A {Drosophila melanogaster}

Probab=99.18  E-value=9.3e-12  Score=72.07  Aligned_cols=53  Identities=21%  Similarity=0.385  Sum_probs=47.2

Q ss_pred             CccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467          24 GAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI   76 (77)
Q Consensus        24 ~~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~   76 (77)
                      +.-+++++|++....+|.++|||||+|.+..+..+..+.|..||++|.+|++.
T Consensus        23 ~RGle~EkIlgat~~~Gel~fLVKWKg~~e~DlVpa~ean~k~PqlVI~FYEe   75 (87)
T 3p7j_A           23 DRGLEAEKILGASDNNGRLTFLIQFKGVDQAEMVPSSVANEKIPRMVIHFYEE   75 (87)
T ss_dssp             TTTCCEEEEEEEEEETTEEEEEEEETTCSSCEEEEHHHHHHHCHHHHHHHHHH
T ss_pred             cCCCCceEEeeEEccCCcEEEEEEECCCCccceEeHHHHhhhChHHHHHHHHH
Confidence            34579999999999999999999999999888888888888999999999764

>3i3c_A Chromobox protein homolog 5; CBX5, chromo shadow domain, structural genomics, structural consortium, SGC, centromere, nucleus, phosphoprotein; 2.48A {Homo sapiens} SCOP: b.34.13.2

Probab=99.17  E-value=2.5e-12  Score=72.69  Aligned_cols=51  Identities=25%  Similarity=0.546  Sum_probs=41.1

Q ss_pred             cEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467          26 EFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI   76 (77)
Q Consensus        26 ~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~   76 (77)
                      -+++++|++....+|.++|||||+|.+..+..+..+.|..||++|.+|++.
T Consensus        22 Gle~EkIlg~t~~~Gel~fLVKWKg~~e~dlVpa~ean~k~PqlVI~FYEe   72 (75)
T 3i3c_A           22 GLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEE   72 (75)
T ss_dssp             CCCEEEEEEEEC---CCEEEEEETTSSCEEEEEHHHHHHHCHHHHHHHHTC
T ss_pred             CCCeeEEeeEEccCCcEEEEEEECCCChhceEEHHHHhhhChHHHHHHHHH
Confidence            468999999999999999999999998766556666677899999999864

>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}

Probab=99.12  E-value=5.2e-12  Score=94.72  Aligned_cols=53  Identities=23%  Similarity=0.491  Sum_probs=42.9

Q ss_pred             CCccEEEEEEEeEEEE-------------------CCeEEEEEEecCCCCCCCCcccCCCCCcH---HHHHHHHH
Q psy5467          23 EGAEFSVETILDKRIV-------------------NGKIEYLLKWKGYSDDDNTWEPEENLDCP---DLIANFIH   75 (77)
Q Consensus        23 ~~~~y~ve~Il~~r~~-------------------~~~~~ylVkW~G~~~~~~TWE~~~~l~~~---~ll~~y~~   75 (77)
                      ++++|.|++||+||.+                   +++.+|||||+||+..+||||++++|.+.   .-+.+|.+
T Consensus        34 ~~~~~~ve~vl~~r~~~~~~~~~~~~~~~~~~~~~~~~~eylvKWkg~s~~hntWe~~e~L~~~~~~~~~~~~~k  108 (800)
T 3mwy_W           34 PEDFHGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCK  108 (800)
T ss_dssp             --CCCBCSEEEEEECCCC--------CCSCCHHHHHHHCEEEEECSSSCTTSCEEECHHHHCSCBTTHHHHHHHH
T ss_pred             cCCCCchhhhccccccccccCCccccccCcCcCCCcCceEEEEEeCCcceeeccccCHHHHhhcchHHHHHHHHH
Confidence            5678999999999998                   78899999999999999999999998421   23555544

>3q6s_A Chromobox protein homolog 1; incenp, heterochromatin, centromere, cell cycle; 1.93A {Homo sapiens} SCOP: b.34.13.2

Probab=99.12  E-value=6.8e-12  Score=71.37  Aligned_cols=51  Identities=25%  Similarity=0.541  Sum_probs=43.7

Q ss_pred             cEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467          26 EFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI   76 (77)
Q Consensus        26 ~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~   76 (77)
                      -+++++|++.+..+|.++|||||+|++..+..+....|+.||++|.+|++.
T Consensus         9 Gle~EkI~g~~~~~Gel~fLvKWKg~~~~dlVpa~ean~k~PqlVI~FYE~   59 (78)
T 3q6s_A            9 GLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEE   59 (78)
T ss_dssp             CCCEEEEEEEECTTSSCEEEEEETTCSCEEEEEHHHHHHHSHHHHHHHHHT
T ss_pred             CCCceEEeeEEcCCCcEEEEEEECCCChhheEeHHHHHhhChHHHHHHHHH
Confidence            468999999999999999999999998766555556666899999999874

>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A

Probab=99.06  E-value=5.4e-11  Score=76.51  Aligned_cols=50  Identities=26%  Similarity=0.611  Sum_probs=43.3

Q ss_pred             EEEEEEEeEEEECC-------------------eEEEEEEecCCCCCCCCcccCCCCC-cHHH--HHHHHHh
Q psy5467          27 FSVETILDKRIVNG-------------------KIEYLLKWKGYSDDDNTWEPEENLD-CPDL--IANFIHI   76 (77)
Q Consensus        27 y~ve~Il~~r~~~~-------------------~~~ylVkW~G~~~~~~TWE~~~~l~-~~~l--l~~y~~~   76 (77)
                      -.|+.||+||...|                   ..+|||||+|++..+|||++..+|. |+.+  |.+|.++
T Consensus        13 ~~id~v~~hr~~~~~~~~~~~~~~~~~~~~~~~~~EYlVKWKg~Sy~HnTWe~ee~L~~~~glkKl~nf~kk   84 (177)
T 2h1e_A           13 HGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQ   84 (177)
T ss_dssp             CCEEEEEEEEECTTSCGGGGCCSSCCCHHHHHHHEEEEEEETTSCGGGCEEECHHHHCSCTTHHHHHHHHHH
T ss_pred             CcceeeecCCccccccccccccccCcccCCCCCceEEEEEECCCccccCeecCHHHHhhchHHHHHHHHHHH
Confidence            36999999999642                   3799999999999999999999995 8888  8888765

>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*

Probab=99.05  E-value=6.4e-12  Score=81.45  Aligned_cols=54  Identities=37%  Similarity=0.660  Sum_probs=45.1

Q ss_pred             CCccEEEEEE------EeEEEECCeEEEEEEecCCCCCCCCcccCCCCC-----cHHHHHHHHHh
Q psy5467          23 EGAEFSVETI------LDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLD-----CPDLIANFIHI   76 (77)
Q Consensus        23 ~~~~y~ve~I------l~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~-----~~~ll~~y~~~   76 (77)
                      ....|.|++|      ++.|..+|..+|||||+|++..+|||++..+|.     +..+|.+|.++
T Consensus        33 ~~~~y~VE~i~d~~~~ld~r~~~~~~eYlVKWkg~s~~h~tWe~~~~L~~~~~~~~~kl~nf~kk   97 (187)
T 2b2y_A           33 TTTIYAVEADGDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKK   97 (187)
T ss_dssp             SSSHHHHHHHCCTTTTCC-CCSCCEEEEEEEETTSCGGGCEEECHHHHHHTTCBCHHHHHHHHHH
T ss_pred             CceeEEeeccCCcccccCccccCCcEEEEEEECCCCcccCeeCCHHHhCccchhhHHHHHHHHHh
Confidence            4467888888      588878899999999999999999999999984     45789999875

>1e0b_A SWI6 protein; chromatin-binding, chromodomain, shadow, heterochromatin; HET: 1PG; 1.9A {Schizosaccharomyces pombe} SCOP: b.34.13.2

Probab=98.23  E-value=3.3e-07  Score=50.67  Aligned_cols=46  Identities=26%  Similarity=0.449  Sum_probs=36.7

Q ss_pred             EEEEEEeEEE-ECCeEEEEEEecCCCCCCCCcccCC--CCCcHHHHHHHHHh
Q psy5467          28 SVETILDKRI-VNGKIEYLLKWKGYSDDDNTWEPEE--NLDCPDLIANFIHI   76 (77)
Q Consensus        28 ~ve~Il~~r~-~~~~~~ylVkW~G~~~~~~TWE~~~--~l~~~~ll~~y~~~   76 (77)
                      .|++|++... ..|.+.||++|+|....+   .+..  |..||++|.+|++.
T Consensus        12 ~Ve~I~g~~~~~~g~L~flikwk~~~~~~---Vpa~~a~~kcPq~vI~FYE~   60 (68)
T 1e0b_A           12 LVSSIDTIERKDDGTLEIYLTWKNGAISH---HPSTITNKKCPQKMLQFYES   60 (68)
T ss_dssp             TEEEEEEEEECTTSCEEEEEEETTSCEEE---EEHHHHHHHSHHHHHHHHHT
T ss_pred             heeEEEEEEECCCCEEEEEEEECCCCccc---eEHHHhHhhCCHHHHHHHHH
Confidence            5889999988 899999999999976432   4443  34799999999874

>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}

Probab=98.12  E-value=3e-07  Score=69.01  Aligned_cols=51  Identities=25%  Similarity=0.563  Sum_probs=43.0

Q ss_pred             cEEEEEEEeEEE-----ECCeEEEEEEecCCCCCCCCcccCCCC--CcHHHHHHHHHh
Q psy5467          26 EFSVETILDKRI-----VNGKIEYLLKWKGYSDDDNTWEPEENL--DCPDLIANFIHI   76 (77)
Q Consensus        26 ~y~ve~Il~~r~-----~~~~~~ylVkW~G~~~~~~TWE~~~~l--~~~~ll~~y~~~   76 (77)
                      ...|++|++++.     ..+..+|||||+|.+..++|||....+  .+++.+..|..+
T Consensus       145 ~~~veRii~~~~~~~~~~~~~~~yLvKW~~L~y~~~tWe~~~~~~~~~~~~i~~~~~r  202 (800)
T 3mwy_W          145 FHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQNR  202 (800)
T ss_dssp             TTCEEEECCCCCEECTTSCEECBCCEEETTSCSTTCBCCBHHHHTTTCHHHHHHHHHT
T ss_pred             ccceeEEEeecccccCCCCCceEEEEEecCCCcccccccchhhhhhhhHHHHHHHHHh
Confidence            346999999987     456789999999999999999998776  478888888764

>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}

Probab=96.68  E-value=0.0037  Score=36.08  Aligned_cols=39  Identities=13%  Similarity=0.336  Sum_probs=33.2

Q ss_pred             cEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCC
Q psy5467          26 EFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL   64 (77)
Q Consensus        26 ~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l   64 (77)
                      .+---+||..+..++..+|+|++.||...-+-|.+.+.|
T Consensus        37 ~~y~AkIl~ir~~~~~~~YyVHY~g~NkRlDEWV~~~rl   75 (92)
T 2ro0_A           37 EERLAEILSINTRKAPPKFYVHYVNYNKRLDEWITTDRI   75 (92)
T ss_dssp             EEEEEEEEEEECSSSSCEEEEEETTSCTTSCEEEEGGGE
T ss_pred             EEEEEEEEEEEEcCCCcEEEEEeCCcCcccccccCHhHc
Confidence            344457888888888899999999999999999998887

>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}

Probab=96.59  E-value=0.0032  Score=35.07  Aligned_cols=39  Identities=18%  Similarity=0.476  Sum_probs=33.1

Q ss_pred             cEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCC
Q psy5467          26 EFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL   64 (77)
Q Consensus        26 ~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l   64 (77)
                      .+---+|++.+..++..+|+|.+.||...-+-|.+.+.|
T Consensus        23 ~~y~AkIl~i~~~~~~~~Y~VHY~gwnkr~DEWV~~~ri   61 (76)
T 2lcc_A           23 KIYEASIKSTEIDDGEVLYLVHYYGWNVRYDEWVKADRI   61 (76)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEETTSCCSSCEEEEGGGE
T ss_pred             CEEEEEEEEEEccCCceEEEEEeCCcCCCceEecChhhc
Confidence            344456788888899999999999999999999998877

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=96.51  E-value=0.0028  Score=40.62  Aligned_cols=46  Identities=26%  Similarity=0.527  Sum_probs=37.6

Q ss_pred             EEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467          28 SVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI   76 (77)
Q Consensus        28 ~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~   76 (77)
                      ....++..+...+..+||++|..+  .+++|.+..++. +.++++|...
T Consensus       188 ~~~~~~~~~~~~~~~e~l~~~~~~--~~~~w~~~~~i~-~~li~~y~~~  233 (244)
T 3ui2_A          188 EVDEIVEKRGKGKDVEYLVRWKDG--GDCEWVKGVHVA-EDVAKDYEDG  233 (244)
T ss_dssp             EEEEEEEEESCTTSCEEEEEESSS--SCEEEEESTTBC-HHHHHHHHHH
T ss_pred             cHHHHHHHhccCcchhhhhhhcCC--CCCCcCcchhcC-HHHHHHHHHH
Confidence            456788888888899999999876  458999999995 7888888764

>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}

Probab=94.91  E-value=0.0013  Score=37.48  Aligned_cols=36  Identities=22%  Similarity=0.572  Sum_probs=30.8

Q ss_pred             EEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCC
Q psy5467          29 VETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL   64 (77)
Q Consensus        29 ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l   64 (77)
                      --+||+.+..++...|+|++.||...-+-|.+.+.|
T Consensus        29 ~AkIl~i~~~~~~~~YyVHY~GwNkR~DEWV~~~Rl   64 (85)
T 2lrq_A           29 EAKVLKTKPDATPVEYYIHYAGWSKNWDEWVPENRV   64 (85)
Confidence            346777777778899999999999998999999888

>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A

Probab=95.79  E-value=0.016  Score=34.01  Aligned_cols=39  Identities=15%  Similarity=0.497  Sum_probs=33.6

Q ss_pred             cEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCC
Q psy5467          26 EFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL   64 (77)
Q Consensus        26 ~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l   64 (77)
                      .+---+||+.+..++...|+|.+.||...-+-|.+++.|
T Consensus        36 ~~YeAkIl~v~~~~~~~~Y~VHY~GwNkR~DEWV~~~Rl   74 (102)
T 2f5k_A           36 LLYEAKCVKVAIKDKQVKYFIHYSGWNKNWDEWVPESRV   74 (102)
T ss_dssp             SEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGE
T ss_pred             EEEEEEEEEEEEcCCCcEEEEEeCCcCCCceeeccHhhc
Confidence            344457888888889999999999999998999999988

>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}

Probab=95.76  E-value=0.014  Score=33.85  Aligned_cols=40  Identities=13%  Similarity=0.346  Sum_probs=34.1

Q ss_pred             cEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCC
Q psy5467          26 EFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLD   65 (77)
Q Consensus        26 ~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~   65 (77)
                      .+---+||..+..++..+|.|.+.||...-+-|.+.+.|+
T Consensus        39 ~~yeAeIl~ir~~~g~~~YYVHY~g~NkRlDEWV~~~RI~   78 (94)
T 2rnz_A           39 EERLAEILSINTRKAPPKFYVHYVNYNKRLDEWITTDRIN   78 (94)
T ss_dssp             CEEEEEEEEEECSSSSCEEEEECTTSCSTTCEEEETTTBC
T ss_pred             EEEEEEEEEEEEcCCCcEEEEEeCCcCcccccccCHHHcc
Confidence            4444678888888889999999999999999999999883

>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.75  E-value=0.0068  Score=34.62  Aligned_cols=42  Identities=19%  Similarity=0.483  Sum_probs=34.1

Q ss_pred             CccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCC
Q psy5467          24 GAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLD   65 (77)
Q Consensus        24 ~~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~   65 (77)
                      +..+---+||..+..++..+|+|++.||...-+-|.+.+.|.
T Consensus        26 ~~~~y~AkIl~i~~~~~~~~YyVHY~g~NkRlDEWV~~~rl~   67 (87)
T 2eko_A           26 EDEWPLAEILSVKDISGRKLFYVHYIDFNRRLDEWVTHERLD   67 (87)
T ss_dssp             CEECCEEEEEEECCSSSCCCEEEEECSSCSCCCEEECTTTBC
T ss_pred             CCeEEEEEEEEEEEcCCCcEEEEEeCCCCcccccccCHhHcc
Confidence            334444567877777788999999999999999999999884

>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3

Probab=95.12  E-value=0.028  Score=32.42  Aligned_cols=39  Identities=15%  Similarity=0.352  Sum_probs=31.7

Q ss_pred             cEEEEEEEeEEEEC---CeEEEEEEecCCCCCCCCcccCCCC
Q psy5467          26 EFSVETILDKRIVN---GKIEYLLKWKGYSDDDNTWEPEENL   64 (77)
Q Consensus        26 ~y~ve~Il~~r~~~---~~~~ylVkW~G~~~~~~TWE~~~~l   64 (77)
                      .+---+||..|...   +..+|+|++.||...-+-|.+.+.|
T Consensus        29 ~~yeAeIl~ir~~~~~~~~~~YYVHY~g~NkRlDEWV~~~RL   70 (92)
T 2bud_A           29 TVHRGQVLQSRTTENAAAPDEYYVHYVGLNRRLDGWVGRHRI   70 (92)
T ss_dssp             CEEEEEEEEEECTTTCSSCCEEEEECSSSCTTTCEEEETTTE
T ss_pred             CEEEEEEEEEeeccCCCCCcEEEEEeCCcccccccccCHHHh
Confidence            44445677777654   6789999999999999999999988

>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3

Probab=94.75  E-value=0.11  Score=31.50  Aligned_cols=40  Identities=15%  Similarity=0.530  Sum_probs=32.6

Q ss_pred             cEEEEEEEeEEEE--CCeEEEEEEecCCCCCCCCcccCCCCC
Q psy5467          26 EFSVETILDKRIV--NGKIEYLLKWKGYSDDDNTWEPEENLD   65 (77)
Q Consensus        26 ~y~ve~Il~~r~~--~~~~~ylVkW~G~~~~~~TWE~~~~l~   65 (77)
                      .+---+||..+..  .+..+|+|++.||...-+-|.+.+.|.
T Consensus        27 ~~y~AkIl~i~~~~~~~~~~YyVHY~gwNkR~DEWV~~~ri~   68 (133)
T 1wgs_A           27 TWHSAEVIQSRVNDQEGREEFYVHYVGFNRRLDEWVDKNRLA   68 (133)
T ss_dssp             EEEEEEEEEEEEETTTTEEEEEEECTTTCSSCCEEECTTTSC
T ss_pred             CEEEEEEEEEEeccCCCceEEEEeccCcCCCceeecChhhcc
Confidence            4445577777764  578999999999999999999999883

>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0

Probab=93.82  E-value=0.049  Score=31.85  Aligned_cols=40  Identities=13%  Similarity=0.148  Sum_probs=31.2

Q ss_pred             CccEEEEEEEeEEEE-----CCeEEEEEEecCCCCCCCCcccCCCC
Q psy5467          24 GAEFSVETILDKRIV-----NGKIEYLLKWKGYSDDDNTWEPEENL   64 (77)
Q Consensus        24 ~~~y~ve~Il~~r~~-----~~~~~ylVkW~G~~~~~~TWE~~~~l   64 (77)
                      ...|+ -+|++.+..     .+...|+|...||...-+-|.+++.|
T Consensus        37 ~~lYe-AKIl~v~~~~~~~~~~~~~Y~VHY~GWn~rwDEWV~edRi   81 (101)
T 3m9q_A           37 RVLYT-SKVLNVFERRNEHGLRFYEYKIHFQGWRPSYDRAVRATVL   81 (101)
T ss_dssp             CCEEE-EEEEEEEEEECTTSCEEEEEEEEETTSCGGGCEEECGGGE
T ss_pred             CcceE-eEEEEEEecCCccccCceEEEEEeCCCCcCceeecCHHHc
Confidence            44555 456666553     46789999999999988999999988

>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A

Probab=91.49  E-value=0.39  Score=27.12  Aligned_cols=20  Identities=15%  Similarity=0.396  Sum_probs=18.0

Q ss_pred             EEEEEecCCCCCCCCcccCC
Q psy5467          43 EYLLKWKGYSDDDNTWEPEE   62 (77)
Q Consensus        43 ~ylVkW~G~~~~~~TWE~~~   62 (77)
                      +|+|++.||+...+-|...+
T Consensus        49 ~v~VHfdGW~~~yDeWv~~d   68 (88)
T 2eqm_A           49 KMLVHFERWSHRYDEWIYWD   68 (88)
T ss_dssp             EEEEEESSSTTTEEEEEETT
T ss_pred             EEEEEECCCCCcccEEeeCC
Confidence            69999999999989998766

>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*

Probab=90.03  E-value=0.19  Score=29.73  Aligned_cols=38  Identities=21%  Similarity=0.525  Sum_probs=28.8

Q ss_pred             cEEEEEEEeEEEEC-----CeEEEEEEecCCCCCCCCcccCCCC
Q psy5467          26 EFSVETILDKRIVN-----GKIEYLLKWKGYSDDDNTWEPEENL   64 (77)
Q Consensus        26 ~y~ve~Il~~r~~~-----~~~~ylVkW~G~~~~~~TWE~~~~l   64 (77)
                      .|+. +||+.....     +...|+|..+||...-+-|.+++.|
T Consensus        39 lYeA-KIl~v~~~~~~~~~~~~~Y~VHY~GWn~~WDEWV~~drl   81 (110)
T 3oa6_A           39 LYDA-KIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHV   81 (110)
T ss_dssp             EEEE-EEEEEEEEECTTCCEEEEEEEEETTSCGGGCEEEEGGGE
T ss_pred             cEEE-EEEEEEeccCCcCCcccEEEEEECCcCcchhhccChhhh
Confidence            4543 566665422     2468999999999999999999988

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	77
d1q3la_	52	b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Fru	2e-22
d1guwa_	73	b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Mou	2e-21
d2dnva1	52	b.34.13.2 (A:7-58) Chromobox protein homolog 8 {Mo	3e-21
d1pfba_	55	b.34.13.2 (A:) Polycomb protein, Pc {Fruit fly (Dr	1e-20
d1g6za_	70	b.34.13.2 (A:) Histone methyltransferase clr4, chr	2e-18
d2dnta1	66	b.34.13.2 (A:8-73) Chromodomain protein, Y-like is	3e-18
d2dy8a1	69	b.34.13.2 (A:279-347) ATP-dependent helicase CHD1	5e-15
d1x3pa1	54	b.34.13.2 (A:1-54) CpSRP43 {Thale cress (Arabidops	6e-15
d2dy7a1	81	b.34.13.2 (A:172-252) ATP-dependent helicase CHD1	5e-14
d2b2ya2	95	b.34.13.2 (A:13-107) ATP-dependent helicase CHD1 (	4e-13
d2b2ya1	80	b.34.13.2 (A:108-187) ATP-dependent helicase CHD1	7e-13
d2huga1	55	b.34.13.2 (A:3-57) CpSRP43 {Thale cress (Arabidops	4e-06
d2f5ka1	83	b.34.13.3 (A:6-88) Mortality factor 4-like protein	8e-06

>d1q3la_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 52

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Heterochromatin protein 1, HP1
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 79.0 bits (195), Expect = 2e-22
 Identities = 28/48 (58%), Positives = 37/48 (77%)

Query: 26 EFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
          E++VE I+D+R+  G +EY LKWKGY + +NTWEPE NLDC DLI  +
Sbjct: 1  EYAVEKIIDRRVRKGMVEYYLKWKGYPETENTWEPENNLDCQDLIQQY 48

>d1guwa_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]} Length = 73

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Heterochromatin protein 1, HP1
species: Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]

 Score = 77.5 bits (191), Expect = 2e-21
 Identities = 41/58 (70%), Positives = 48/58 (82%)

Query: 16 AEVAPEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
           E   EEE  E+ VE +LD+R+V GK+EYLLKWKG+SD+DNTWEPEENLDCPDLIA F
Sbjct: 3  VEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEF 60

>d2dnva1 b.34.13.2 (A:7-58) Chromobox protein homolog 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Chromobox protein homolog 8
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.9 bits (187), Expect = 3e-21
 Identities = 24/48 (50%), Positives = 34/48 (70%)

Query: 26 EFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
           F+ E +L +RI  G++EYL+KWKG+S   +TWEPEEN+    L+A F
Sbjct: 4  VFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAF 51

>d1pfba_ b.34.13.2 (A:) Polycomb protein, Pc {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 55

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Polycomb protein, Pc
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 74.4 bits (183), Expect = 1e-20
 Identities = 20/48 (41%), Positives = 30/48 (62%)

Query: 26 EFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
           ++ E I+ KR+  G +EY +KWKG++   NTWEPE N+    LI  +
Sbjct: 3  VYAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNILDRRLIDIY 50

>d1g6za_ b.34.13.2 (A:) Histone methyltransferase clr4, chromo domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 70

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Histone methyltransferase clr4, chromo domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 69.4 bits (170), Expect = 2e-18
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 5/58 (8%)

Query: 19 APEEEGAEFSVETILDKRIV--NGKIEYLLKWKGYSDDDNTWEPEENL-DCPDLIANF 73
          +P++E  E+ VE I+D+++        Y ++W  YS   +TWEP ENL  C  ++A +
Sbjct: 3  SPKQE--EYEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLSGCSAVLAEW 58

>d2dnta1 b.34.13.2 (A:8-73) Chromodomain protein, Y-like isoform {Human (Homo sapiens) [TaxId: 9606]} Length = 66

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Chromodomain protein, Y-like isoform
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.0 bits (169), Expect = 3e-18
 Identities = 28/58 (48%), Positives = 40/58 (68%), Gaps = 5/58 (8%)

Query: 18 VAPEEEGAEFSVETILDKRIV-NGKIEYLLKWKGYSDDDNTWEPEENL-DCPDLIANF 73
          +A EE    + VE I+DKR    GK EYL++WKGY  +D+TWEPE++L +C + I +F
Sbjct: 1  MASEEL---YEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDF 55

>d2dy8a1 b.34.13.2 (A:279-347) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: ATP-dependent helicase CHD1 (Chromo domain protein 1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.7 bits (147), Expect = 5e-15
 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 7/60 (11%)

Query: 21 EEEGAEFSVETILDKRIV-----NGKIEYLLKWKGYSDDDNTWEPEENL--DCPDLIANF 73
          +E       E I+D +         +++YL+KW+  + D+ TWE   ++    P+ + +F
Sbjct: 1  DEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHF 60

>d1x3pa1 b.34.13.2 (A:1-54) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 54

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: CpSRP43
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 60.1 bits (146), Expect = 6e-15
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 5/47 (10%)

Query: 29 VETILDKRIVN--GKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
           E+++ KR+ +    IEYL+KW   S  D TWEP++N+D   L+  +
Sbjct: 3  AESVIGKRVGDDGKTIEYLVKWTDMS--DATWEPQDNVD-STLVLLY 46

>d2dy7a1 b.34.13.2 (A:172-252) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 81

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: ATP-dependent helicase CHD1 (Chromo domain protein 1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.7 bits (142), Expect = 5e-14
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 17 EVAPEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL-DCPDL--IANF 73
           +    E  +   +T+ D        E+L+KW   S   NTWE  E++     L  + N+
Sbjct: 15 RLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNY 74

Query: 74 I 74
           
Sbjct: 75 C 75

>d2b2ya2 b.34.13.2 (A:13-107) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: ATP-dependent helicase CHD1 (Chromo domain protein 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (136), Expect = 4e-13
 Identities = 17/39 (43%), Positives = 24/39 (61%)

Query: 33 LDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIA 71
           +K    G+I+YL+KWKG+S   NTWE EE L   ++  
Sbjct: 37 FEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRG 75

>d2b2ya1 b.34.13.2 (A:108-187) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: ATP-dependent helicase CHD1 (Chromo domain protein 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (134), Expect = 7e-13
 Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 5/62 (8%)

Query: 17 EVAPEEEGAEFSVETILDKRIV---NGKIEYLLKWKGYSDDDNTWEPEENLD--CPDLIA 71
          E+  +       V  I+         G  +Y  KW+G    + +WE    +       I 
Sbjct: 14 ELTDDLHKQYQIVGRIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACID 73

Query: 72 NF 73
           +
Sbjct: 74 EY 75

>d2huga1 b.34.13.2 (A:3-57) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 55

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: CpSRP43
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 37.8 bits (88), Expect = 4e-06
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 29 VETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
          V+ I++KR     +EYL++WK     D  W    ++   D+  ++
Sbjct: 8  VDEIVEKRGKGKDVEYLVRWK--DGGDCEWVKGVHV-AEDVAKDY 49

>d2f5ka1 b.34.13.3 (A:6-88) Mortality factor 4-like protein 1, MRG15 {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo barrel domain
domain: Mortality factor 4-like protein 1, MRG15
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (87), Expect = 8e-06
 Identities = 6/33 (18%), Positives = 18/33 (54%)

Query: 32 ILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL 64
           +   I + +++Y + + G++ + + W PE  +
Sbjct: 25 CVKVAIKDKQVKYFIHYSGWNKNWDEWVPESRV 57

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	77
d1pfba_	55	Polycomb protein, Pc {Fruit fly (Drosophila melano	99.88
d2dnva1	52	Chromobox protein homolog 8 {Mouse (Mus musculus)	99.88
d1q3la_	52	Heterochromatin protein 1, HP1 {Fruit fly (Drosoph	99.88
d1guwa_	73	Heterochromatin protein 1, HP1 {Mouse (Mus musculu	99.87
d2dnta1	66	Chromodomain protein, Y-like isoform {Human (Homo	99.84
d1g6za_	70	Histone methyltransferase clr4, chromo domain {Fis	99.81
d2dy8a1	69	ATP-dependent helicase CHD1 (Chromo domain protein	99.75
d2b2ya1	80	ATP-dependent helicase CHD1 (Chromo domain protein	99.66
d1x3pa1	54	CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId	99.6
d2dy7a1	81	ATP-dependent helicase CHD1 (Chromo domain protein	99.51
d2b2ya2	95	ATP-dependent helicase CHD1 (Chromo domain protein	99.27
d2huga1	55	CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId	98.94
d3deoa1	44	CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId	98.84
d2fmma1	68	Heterochromatin protein 1, HP1 {Mouse (Mus musculu	98.81
d2f5ka1	83	Mortality factor 4-like protein 1, MRG15 {Human (H	97.95
d2buda1	88	Putative histone acetyltransferase MOF {Fruit fly	95.79
d1wgsa_	133	Probable histone acetyltransferase MYST1 {Mouse (M	94.68

>d1pfba_ b.34.13.2 (A:) Polycomb protein, Pc {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Polycomb protein, Pc
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.88  E-value=1.4e-23  Score=111.68  Aligned_cols=53  Identities=38%  Similarity=0.713  Sum_probs=50.4

Q ss_pred             CccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467          24 GAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI   76 (77)
Q Consensus        24 ~~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~   76 (77)
                      +..|+|++||++|..+|+++|||||+||++++|||||++||.|+++|.+|+++
T Consensus         1 d~~yeVE~Il~~r~~~~~~~YlVkW~Gy~~~~~TWEp~~nl~~~~li~~f~~~   53 (55)
T d1pfba_           1 DLVYAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNILDRRLIDIYEQT   53 (55)
T ss_dssp             CEEEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGCCSTHHHHHHHTS
T ss_pred             CCeEEEEEEEeEEEeCCeEEEEEEECCCCCCCCcCccHhHCCCHHHHHHHHHh
Confidence            46899999999999999999999999999999999999999999999999875

>d2dnva1 b.34.13.2 (A:7-58) Chromobox protein homolog 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Chromobox protein homolog 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=1.1e-23  Score=111.00  Aligned_cols=52  Identities=46%  Similarity=0.868  Sum_probs=49.7

Q ss_pred             CCccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHH
Q psy5467          23 EGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFI   74 (77)
Q Consensus        23 ~~~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~   74 (77)
                      +++.|+|++||++|..+|+++|||||+||+.++|||||++||.|++||++|.
T Consensus         1 Ge~~yeVE~Il~~r~~~~~~~YlVkW~gy~~~~~TWEp~~nl~~~~li~~fe   52 (52)
T d2dnva1           1 GERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFE   52 (52)
T ss_dssp             SCCCCCCCCEEEEEESSSSEEEEECCSSCCCSSCCEEETTTCCCHHHHHHHH
T ss_pred             CCceEEEEEEEEEEEeCCeEEEEEEECCCCCcCCeEccHHHCCChHHHHhcC
Confidence            5789999999999999999999999999999999999999999999999985

>d1q3la_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Heterochromatin protein 1, HP1
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.88  E-value=2.1e-23  Score=109.86  Aligned_cols=51  Identities=55%  Similarity=1.144  Sum_probs=49.2

Q ss_pred             cEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467          26 EFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI   76 (77)
Q Consensus        26 ~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~   76 (77)
                      +|+|++||++|..+|+++|||||+||+.+++||||.+||+|+++|.+|+++
T Consensus         1 EyeVE~Il~~r~~~~~~~YlVkW~Gy~~~~~tWEp~~~l~~~~~i~~f~~~   51 (52)
T d1q3la_           1 EYAVEKIIDRRVRKGMVEYYLKWKGYPETENTWEPENNLDCQDLIQQYEAS   51 (52)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGEECHHHHHHHHHH
T ss_pred             CceEEEEEEEEEeCCeEEEEEEECCCCCccCcEecHHHCCCHHHHHHHHhc
Confidence            599999999999999999999999999999999999999999999999875

>d1guwa_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Heterochromatin protein 1, HP1
species: Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]

Probab=99.87  E-value=2.7e-23  Score=116.16  Aligned_cols=59  Identities=68%  Similarity=1.251  Sum_probs=54.7

Q ss_pred             CCCCCCCccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467          18 VAPEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI   76 (77)
Q Consensus        18 ~~~~~~~~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~   76 (77)
                      .+.++++++|+|++||++|..+|.++|||||+||+..+|||||..||+|+++|.+|+++
T Consensus         5 ~~~~d~~~eyeVE~Il~~r~~~~~~~YlVkW~Gy~~~~~TWEp~~nl~~~~~i~~f~~~   63 (73)
T d1guwa_           5 EVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQS   63 (73)
T ss_dssp             CCCSCCCCCCBEEEECCCBCCTTCCEECEEESSSCTTSCCCEETTTEECHHHHHHHHHH
T ss_pred             ccccCCCceEEEEEEEEEEEcCCcEEEEEEECCCCCcCCcCcChHHCCCHHHHHHHHHH
Confidence            44556888999999999999999999999999999999999999999999999999875

>d2dnta1 b.34.13.2 (A:8-73) Chromodomain protein, Y-like isoform {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Chromodomain protein, Y-like isoform
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.2e-22  Score=109.75  Aligned_cols=55  Identities=45%  Similarity=0.955  Sum_probs=50.7

Q ss_pred             CCCccEEEEEEEeEEE-ECCeEEEEEEecCCCCCCCCcccCCCC-CcHHHHHHHHHh
Q psy5467          22 EEGAEFSVETILDKRI-VNGKIEYLLKWKGYSDDDNTWEPEENL-DCPDLIANFIHI   76 (77)
Q Consensus        22 ~~~~~y~ve~Il~~r~-~~~~~~ylVkW~G~~~~~~TWE~~~~l-~~~~ll~~y~~~   76 (77)
                      .+++.|+|++||++|. .+|+++|||||+||+..++||||.+|| +|+++|.+|+++
T Consensus         2 a~e~~y~VE~Ild~R~~~~g~~~YlVkW~Gy~~~~~TWEp~~~l~~~~~~i~~f~~~   58 (66)
T d2dnta1           2 ASEELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRR   58 (66)
T ss_dssp             CSSCSCCCCCEEEEEECTTSCEEEEECBTTBCGGGCEEEETTTCTTCHHHHHHHHHH
T ss_pred             CCCceEEEEEEEEEEEcCCCcEEEEEEECCCCCccCeEecHHHHhhhHHHHHHHHHH
Confidence            3678999999999998 568999999999999999999999999 799999999875

>d1g6za_ b.34.13.2 (A:) Histone methyltransferase clr4, chromo domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Histone methyltransferase clr4, chromo domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.81  E-value=1.6e-21  Score=107.97  Aligned_cols=56  Identities=32%  Similarity=0.707  Sum_probs=50.1

Q ss_pred             CCCCccEEEEEEEeEEEEC--CeEEEEEEecCCCCCCCCcccCCCC-CcHHHHHHHHHh
Q psy5467          21 EEEGAEFSVETILDKRIVN--GKIEYLLKWKGYSDDDNTWEPEENL-DCPDLIANFIHI   76 (77)
Q Consensus        21 ~~~~~~y~ve~Il~~r~~~--~~~~ylVkW~G~~~~~~TWE~~~~l-~~~~ll~~y~~~   76 (77)
                      ..++++|+|++||++|...  +.++|||||+||+..++|||++.|| +|+++|.+|+++
T Consensus         3 ~~~e~eyeVE~Il~~R~~~~~~~~~YlVkW~Gy~~~~~TWEp~~~L~~~~~~i~~f~~~   61 (70)
T d1g6za_           3 SPKQEEYEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLSGCSAVLAEWKRR   61 (70)
T ss_dssp             CCSSCSSCCCSCSEEECCTTSSCCEEEECCTTTTSSCCEEECGGGGSSCHHHHHHHHHH
T ss_pred             CCCCcEEEEEEEEEEEEccCCCeEEEEEEeCCCCcccCeeecHHHHhhhHHHHHHHHHH
Confidence            3467899999999999843  5789999999999999999999999 799999999875

>d2dy8a1 b.34.13.2 (A:279-347) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: ATP-dependent helicase CHD1 (Chromo domain protein 1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=2.6e-19  Score=98.60  Aligned_cols=54  Identities=24%  Similarity=0.524  Sum_probs=47.7

Q ss_pred             CCccEEEEEEEeEEEE-----CCeEEEEEEecCCCCCCCCcccCCCC--CcHHHHHHHHHh
Q psy5467          23 EGAEFSVETILDKRIV-----NGKIEYLLKWKGYSDDDNTWEPEENL--DCPDLIANFIHI   76 (77)
Q Consensus        23 ~~~~y~ve~Il~~r~~-----~~~~~ylVkW~G~~~~~~TWE~~~~l--~~~~ll~~y~~~   76 (77)
                      .++.+.|++||++|..     .+.++|||||+|++..+||||++.+|  .|+++|.+|++|
T Consensus         3 ~ee~~~VErIld~r~~~~~~~~~~~eYlVKWkg~~y~~~TWE~~~~l~~~~~~~i~~f~~r   63 (69)
T d2dy8a1           3 FEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQNR   63 (69)
T ss_dssp             CCSSSCEEEEEEEEEEECSSSCEEEEEEEEESCCSSCCCEEEEHHHHHHHSHHHHHHHHHH
T ss_pred             ccccccceEEeeEEeeeccCCCCeEEEEEEeCCCChhhCccccHHHhhhhhHHHHHHHHHH
Confidence            4567789999999973     25799999999999999999999999  489999999986

>d2b2ya1 b.34.13.2 (A:108-187) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: ATP-dependent helicase CHD1 (Chromo domain protein 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=6.4e-18  Score=95.42  Aligned_cols=53  Identities=19%  Similarity=0.348  Sum_probs=46.8

Q ss_pred             CccEEEEEEEeEEEE---CCeEEEEEEecCCCCCCCCcccCCCC--CcHHHHHHHHHh
Q psy5467          24 GAEFSVETILDKRIV---NGKIEYLLKWKGYSDDDNTWEPEENL--DCPDLIANFIHI   76 (77)
Q Consensus        24 ~~~y~ve~Il~~r~~---~~~~~ylVkW~G~~~~~~TWE~~~~l--~~~~ll~~y~~~   76 (77)
                      .+.|.|++||++|..   .|.++|||||+|++..+||||+..+|  .++++|.+|++|
T Consensus        21 ~e~~~VERIi~~r~~~~~~g~~~YLVKWkg~~y~~~TWE~~~~l~~~~~~~I~~f~~R   78 (80)
T d2b2ya1          21 KQYQIVGRIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFSR   78 (80)
T ss_dssp             HHTTSEEEEEEEEEEECTTSCEEEEEEETTSCGGGCEEECHHHHHHHHHHHHHHHHHT
T ss_pred             cCceeeEEEEEEEecccCCCcEEEEEEeCCCChhhCccccHHHHhHhHHHHHHHHHHh
Confidence            345699999999863   47899999999999999999999999  588999999986

>d1x3pa1 b.34.13.2 (A:1-54) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: CpSRP43
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.60  E-value=2.3e-18  Score=90.82  Aligned_cols=46  Identities=35%  Similarity=0.737  Sum_probs=39.7

Q ss_pred             EEEEEEeEEE--ECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467          28 SVETILDKRI--VNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI   76 (77)
Q Consensus        28 ~ve~Il~~r~--~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~   76 (77)
                      +|++||++|.  ++|.++|||||+||  +++||||.+|| +++||.+|+++
T Consensus         2 vvE~Il~~R~~~~~~~~eYlVkW~gy--~~~TWEP~~nl-~~~li~~f~~~   49 (54)
T d1x3pa1           2 VAESVIGKRVGDDGKTIEYLVKWTDM--SDATWEPQDNV-DSTLVLLYQQQ   49 (54)
T ss_dssp             CSSCCCCBSSCSSSCCCCBCCCCSSS--SSCSCSTTCCS-SSSSHHHHTSS
T ss_pred             HHHHHHHHHccCCCCeEEEEEEECCC--CCCCccchHHC-CHHHHHHHHHh
Confidence            4789999997  44789999999999  47999999999 57999999764

>d2dy7a1 b.34.13.2 (A:172-252) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: ATP-dependent helicase CHD1 (Chromo domain protein 1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=1.1e-15  Score=86.37  Aligned_cols=55  Identities=22%  Similarity=0.492  Sum_probs=45.2

Q ss_pred             CCccEEEEEEEeEEEECC-------------------eEEEEEEecCCCCCCCCcccCCCC-CcH--HHHHHHHHhC
Q psy5467          23 EGAEFSVETILDKRIVNG-------------------KIEYLLKWKGYSDDDNTWEPEENL-DCP--DLIANFIHIV   77 (77)
Q Consensus        23 ~~~~y~ve~Il~~r~~~~-------------------~~~ylVkW~G~~~~~~TWE~~~~l-~~~--~ll~~y~~~~   77 (77)
                      +++.+.|++||+||.+.+                   ..+|||||+||+..+|||||.++| +|.  .-|.+|.+++
T Consensus         2 ~ed~~~IdkVldhR~k~~~e~~~~~~e~i~d~~~~~~~~eylVKW~g~~~~~~tWe~~~~L~~~~~~~k~~ny~k~~   78 (81)
T d2dy7a1           2 PEDFHGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQF   78 (81)
T ss_dssp             CCCCCCCCEEEEEECCCTTTCCCCCCCCCSSHHHHHHHCEEEEECCCCSSCCCEEECHHHHTTSSHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHhccccCCCCCCcceeeeeccccCCCCcEEEEEEECCCCcccCcccCHHHHhhcchHHHHHHHHHHH
Confidence            466788999999998532                   369999999999999999999999 454  4588888763

>d2b2ya2 b.34.13.2 (A:13-107) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: ATP-dependent helicase CHD1 (Chromo domain protein 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=4.5e-13  Score=77.31  Aligned_cols=37  Identities=46%  Similarity=0.868  Sum_probs=31.2

Q ss_pred             CeEEEEEEecCCCCCCCCcccCCCCCc-----HHHHHHHHHh
Q psy5467          40 GKIEYLLKWKGYSDDDNTWEPEENLDC-----PDLIANFIHI   76 (77)
Q Consensus        40 ~~~~ylVkW~G~~~~~~TWE~~~~l~~-----~~ll~~y~~~   76 (77)
                      +..+|||||+||+..+|||++.++|.+     ..-|.+|.++
T Consensus        44 ~~~eylIKWkg~s~~hntWe~~e~L~~~~~~g~kkl~ny~kk   85 (95)
T d2b2ya2          44 GEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKK   85 (95)
T ss_dssp             CEEEEEEEETTSCGGGCEEECHHHHHHTTCBCHHHHHHHHHH
T ss_pred             CcEEEEEEeCCCCcccCcccCHHHHhhhhHHHHHHHHHHHHH
Confidence            479999999999999999999999843     3457888765

>d2huga1 b.34.13.2 (A:3-57) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: CpSRP43
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.94  E-value=7.3e-12  Score=65.28  Aligned_cols=46  Identities=26%  Similarity=0.533  Sum_probs=40.7

Q ss_pred             EEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467          28 SVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI   76 (77)
Q Consensus        28 ~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~   76 (77)
                      +|++|++.|..++.++|||+|++.  .+++|+++.++ +.++|.+|.+-
T Consensus         7 EV~~Il~~R~~g~~~EYLVeWkDg--~~~sWV~a~~I-a~Dvv~dfEag   52 (55)
T d2huga1           7 EVDEIVEKRGKGKDVEYLVRWKDG--GDCEWVKGVHV-AEDVAKDYEDG   52 (55)
T ss_dssp             CSSCCCCCCCSSBCCCCEEECTTS--SSEEECCTTBC-CHHHHHTTHHH
T ss_pred             hHHHHHhhhccCCCeEEEEEEcCC--CCCccccHHHH-HHHHHHHHHcc
Confidence            578999999999999999999986  56999999999 77899999764

>d3deoa1 b.34.13.2 (A:85-128) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: CpSRP43
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.84  E-value=5.4e-09  Score=51.24  Aligned_cols=43  Identities=28%  Similarity=0.767  Sum_probs=37.2

Q ss_pred             EEEEEEeEEEE-CCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHH
Q psy5467          28 SVETILDKRIV-NGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF   73 (77)
Q Consensus        28 ~ve~Il~~r~~-~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y   73 (77)
                      +|.+|+++|.. .|.++|||.|++-  ...+|.|..++ +.++|.+|
T Consensus         1 ev~kIi~sR~~~dgg~eYliEWkD~--h~pSWvP~~~I-A~dvv~ey   44 (44)
T d3deoa1           1 EVNKIIGSRTAGEGAMEYLIEWKDG--HSPSWVPSSYI-AADVVSEY   44 (44)
T ss_dssp             CEEEEEEEEEETTTEEEEEEEETTC--CCCEEEEGGGS-CHHHHHHH
T ss_pred             CcchhcceeecCCCceeEEEEeccC--CCCCcCCHHHH-HhhhhhcC
Confidence            47899999996 7899999999976  45899999999 77888876

>d2fmma1 b.34.13.2 (A:108-175) Heterochromatin protein 1, HP1 {Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo domain
domain: Heterochromatin protein 1, HP1
species: Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]

Probab=98.81  E-value=1e-09  Score=59.55  Aligned_cols=50  Identities=26%  Similarity=0.557  Sum_probs=40.4

Q ss_pred             EEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467          27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI   76 (77)
Q Consensus        27 y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~   76 (77)
                      +++++|++....+|.++|||||+|.+.-+..--...+..||.+|.+|+++
T Consensus        10 l~~ekIig~t~~~gel~flvkwk~~d~~dlVp~~~a~~~~Pq~VI~fYE~   59 (68)
T d2fmma1          10 LEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEE   59 (68)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEETTCSCCEEEEHHHHHHHCHHHHHHHHHT
T ss_pred             CCccEEEEeEccCCeEEEEEEECCCChhhheeHHHHHHhCCHHHHHHHHH
Confidence            57899999999999999999999997655333333444799999999875

>d2f5ka1 b.34.13.3 (A:6-88) Mortality factor 4-like protein 1, MRG15 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo barrel domain
domain: Mortality factor 4-like protein 1, MRG15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=5.2e-06  Score=46.07  Aligned_cols=41  Identities=15%  Similarity=0.502  Sum_probs=36.7

Q ss_pred             CCccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCC
Q psy5467          23 EGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL   64 (77)
Q Consensus        23 ~~~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l   64 (77)
                      +...|+. +||+.+...+...|+|+|+||...-+.|.+.++|
T Consensus        17 ~~~lYeA-kil~~~~~~~~~~Y~VHy~GWn~~~DeWv~~~ri   57 (83)
T d2f5ka1          17 GPLLYEA-KCVKVAIKDKQVKYFIHYSGWNKNWDEWVPESRV   57 (83)
T ss_dssp             SSSEEEE-EEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGE
T ss_pred             CCeeEEe-EEEEEEEcCCceEEEEEecccCCccccccChhhc
Confidence            4556775 6999999999999999999999999999999998

>d2buda1 b.34.13.3 (A:367-454) Putative histone acetyltransferase MOF {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo barrel domain
domain: Putative histone acetyltransferase MOF
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.79  E-value=0.0067  Score=33.42  Aligned_cols=40  Identities=15%  Similarity=0.338  Sum_probs=33.9

Q ss_pred             ccEEEEEEEeEEE---ECCeEEEEEEecCCCCCCCCcccCCCC
Q psy5467          25 AEFSVETILDKRI---VNGKIEYLLKWKGYSDDDNTWEPEENL   64 (77)
Q Consensus        25 ~~y~ve~Il~~r~---~~~~~~ylVkW~G~~~~~~TWE~~~~l   64 (77)
                      ..|..-+||..|.   ..+..+|+|++.||...-+-|.+.+.|
T Consensus        24 g~~~~AkIi~~R~~~~~~g~~eYyVHY~g~n~r~DEWV~~~ri   66 (88)
T d2buda1          24 GTVHRGQVLQSRTTENAAAPDEYYVHYVGLNRRLDGWVGRHRI   66 (88)
T ss_dssp             SCEEEEEEEEEECTTTCSSCCEEEEECSSSCTTTCEEEETTTE
T ss_pred             CCEeeEEEEEEEecCCCCCceEEEEEecCccchhhhccCHhHh
Confidence            4566668998886   356789999999999999999999988

>d1wgsa_ b.34.13.3 (A:) Probable histone acetyltransferase MYST1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo barrel domain
domain: Probable histone acetyltransferase MYST1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.68  E-value=0.041  Score=32.07  Aligned_cols=41  Identities=15%  Similarity=0.526  Sum_probs=33.4

Q ss_pred             ccEEEEEEEeEEEE--CCeEEEEEEecCCCCCCCCcccCCCCC
Q psy5467          25 AEFSVETILDKRIV--NGKIEYLLKWKGYSDDDNTWEPEENLD   65 (77)
Q Consensus        25 ~~y~ve~Il~~r~~--~~~~~ylVkW~G~~~~~~TWE~~~~l~   65 (77)
                      ..|-.-+||..|..  .+..+|+|++.||...-+-|.+.+.|.
T Consensus        26 g~~~~AkVl~~r~~~~~~~~~yyVHY~g~n~r~DEWV~~~ri~   68 (133)
T d1wgsa_          26 STWHSAEVIQSRVNDQEGREEFYVHYVGFNRRLDEWVDKNRLA   68 (133)
T ss_dssp             TEEEEEEEEEEEEETTTTEEEEEEECTTTCSSCCEEECTTTSC
T ss_pred             CCEeEEEEEEEEecccCCCeEEEEEccCCccccceecCHHHcc
Confidence            34555678887764  467899999999999999999998883