Psyllid ID: psy5514

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120----
Protein Sequence
MFAQYTVNVYGSCKQLHITQLFKIGHTEVGTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYGLCHLPISSGTTAKQ
Secondary Structure (PSIPRED)
ccEEEEccccccEEEEEEEEEEEEEEccccccEEEEEEEEEccccEEEEccccEEEEEEEEEccccccEEEEEccEEEEEEEcccccccEEEEEEEEEcccccEEEEEEEEEEEcccccEEEEc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEccccEEEEEcEEEEEccccccccEEEEEEEEEEccccEEEcccccccEEEEcccccccEEEEEccEEEEEEccccccccEEEEEEEEcccccccEEEEEEEEEEcccccccccc
Coil and Loop (DISEMBL)
MFAQYTVNVYGSCKQLHITQLfkightevgtlgVCRYLGCLGVSRYLRKLFGIEEGISQISKhtagcpqfvwnfpieivfksnnphgwpqLILCVYgldgfgndvirgyglchlpissgttakq
Flexible Loop (DISEMBL)
MFAQYTVNVYGSCKQLHITQLFKIGHTEVGTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYGLChlpissgttakq
Low Complexity Region (SEG)
MFAQYTVNVYGSCKQLHITQLFKIGHTEVGTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYGLCHLPISSGTTAKQ
Disordered region (IsUnstruct)
**AQYTVNVYGSCKQLHITQLFKIGHTEVGTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYGLCHLPI********
Disordered Region (DISOPRED)
************CKQLHITQLFKIGHTEVGTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYGLCHLPISSG*****
Disordered Region (DISEMBL)
MFAQYTVNVYGSCKQLHITQLFKIGHTEVGTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYGLCHLPI********
Disordered Region (DISPRO)
*FAQYTVNVYGSCKQLHITQLFKIGHTEVGTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYGLCHLPIS*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFAQYTVNVYGSCKQLHITQLFKIGHTEVGTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYGLCHLPISSGTTAKQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	124	2.2.26 [Sep-21-2011]
Q5BJ61	198	B9 domain-containing prot	yes	N/A	0.580	0.363	0.616	1e-21
Q6DFD7	198	B9 domain-containing prot	N/A	N/A	0.548	0.343	0.637	5e-21
Q9R1S0	204	B9 domain-containing prot	yes	N/A	0.669	0.406	0.523	1e-20
P0C5J2	204	B9 domain-containing prot	yes	N/A	0.669	0.406	0.523	2e-20
Q9UPM9	204	B9 domain-containing prot	yes	N/A	0.669	0.406	0.523	2e-20
Q503B7	201	B9 domain-containing prot	yes	N/A	0.580	0.358	0.555	1e-19
P0C5J3	175	B9 domain-containing prot	no	N/A	0.580	0.411	0.383	3e-08
Q56JY9	175	B9 domain-containing prot	no	N/A	0.580	0.411	0.383	4e-08
Q3UK10	175	B9 domain-containing prot	no	N/A	0.580	0.411	0.383	5e-08
Q9BPU9	175	B9 domain-containing prot	no	N/A	0.580	0.411	0.369	1e-07

>sp|Q5BJ61|B9D1_XENTR B9 domain-containing protein 1 OS=Xenopus tropicalis GN=b9d1 PE=2 SV=1

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 45/73 (61%), Positives = 54/73 (73%), Gaps = 1/73 (1%)

Query: 52  GIEEGISQISKHTAGCPQ-FVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYG 110
           G+EEGISQI+  + G  Q  VWNFPIEI FKS NP GWPQ+++ VYG D FGNDV+RGYG
Sbjct: 44  GVEEGISQITSKSQGGKQALVWNFPIEITFKSTNPFGWPQIVISVYGPDAFGNDVVRGYG 103

Query: 111 LCHLPISSGTTAK 123
             HLP + G  A+
Sbjct: 104 AVHLPFTPGRHAR 116

Component of the tectonic-like complex, a complex localized at the transition zone of primary cilia and acting as a barrier that prevents diffusion of transmembrane proteins between the cilia and plasma membranes. Required for ciliogenesis and sonic hedgehog/SHH signaling.
Xenopus tropicalis (taxid: 8364)

>sp|Q6DFD7|B9D1_XENLA B9 domain-containing protein 1 OS=Xenopus laevis GN=b9d1 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 44/69 (63%), Positives = 53/69 (76%), Gaps = 1/69 (1%)

Query: 52  GIEEGISQISKHTAGCPQ-FVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYG 110
           GIEEGISQI+  + G  Q  VWNFP+EI FKS NP+GWPQ+++ VYG D FGNDV+RGYG
Sbjct: 44  GIEEGISQITSKSQGGKQTLVWNFPVEITFKSTNPYGWPQIVISVYGPDVFGNDVVRGYG 103

Query: 111 LCHLPISSG 119
             HLP + G
Sbjct: 104 AVHLPFTPG 112

Component of the tectonic-like complex, a complex localized at the transition zone of primary cilia and acting as a barrier that prevents diffusion of transmembrane proteins between the cilia and plasma membranes. Required for ciliogenesis and sonic hedgehog/SHH signaling.

Xenopus laevis (taxid: 8355)

>sp|Q9R1S0|B9D1_MOUSE B9 domain-containing protein 1 OS=Mus musculus GN=B9d1 PE=1 SV=1

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 58/86 (67%), Gaps = 3/86 (3%)

Query: 35  CRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQ-FVWNFPIEIVFKSNNPHGWPQLIL 93
           C+Y  C    +      G+EEGISQI+  +    Q  VWNFPI++ FKS NP+GWPQ++L
Sbjct: 30  CKY--CFVYGQDWAPTAGLEEGISQIASKSQDVRQALVWNFPIDVTFKSTNPYGWPQIVL 87

Query: 94  CVYGLDGFGNDVIRGYGLCHLPISSG 119
            VYG D FGNDV+RGYG  H+P+S G
Sbjct: 88  SVYGPDVFGNDVVRGYGAVHVPLSPG 113

Component of the tectonic-like complex, a complex localized at the transition zone of primary cilia and acting as a barrier that prevents diffusion of transmembrane proteins between the cilia and plasma membranes. Required for ciliogenesis and sonic hedgehog/SHH signaling.

Mus musculus (taxid: 10090)

>sp|P0C5J2|B9D1_RAT B9 domain-containing protein 1 OS=Rattus norvegicus GN=B9d1 PE=2 SV=1

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 57/86 (66%), Gaps = 3/86 (3%)

Query: 35  CRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQ-FVWNFPIEIVFKSNNPHGWPQLIL 93
           C+Y  C    +      G+EEGISQI+  +    Q  VWNFPI++ FKS NP+GWPQ++L
Sbjct: 30  CKY--CFVYGQDWAPTAGLEEGISQIASKSQDVRQALVWNFPIDVTFKSTNPYGWPQIVL 87

Query: 94  CVYGLDGFGNDVIRGYGLCHLPISSG 119
            VYG D FGNDV+RGYG  H+P S G
Sbjct: 88  SVYGPDVFGNDVVRGYGAVHVPFSPG 113

Component of the tectonic-like complex, a complex localized at the transition zone of primary cilia and acting as a barrier that prevents diffusion of transmembrane proteins between the cilia and plasma membranes. Required for ciliogenesis and sonic hedgehog/SHH signaling.

Rattus norvegicus (taxid: 10116)

>sp|Q9UPM9|B9D1_HUMAN B9 domain-containing protein 1 OS=Homo sapiens GN=B9D1 PE=1 SV=1

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 57/86 (66%), Gaps = 3/86 (3%)

Query: 35  CRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQ-FVWNFPIEIVFKSNNPHGWPQLIL 93
           C+Y  C    +      G+EEGISQI+  +    Q  VWNFPI++ FKS NP+GWPQ++L
Sbjct: 30  CKY--CFVYGQDWAPTAGLEEGISQITSKSQDVRQALVWNFPIDVTFKSTNPYGWPQIVL 87

Query: 94  CVYGLDGFGNDVIRGYGLCHLPISSG 119
            VYG D FGNDV+RGYG  H+P S G
Sbjct: 88  SVYGPDVFGNDVVRGYGAVHVPFSPG 113

Component of the tectonic-like complex, a complex localized at the transition zone of primary cilia and acting as a barrier that prevents diffusion of transmembrane proteins between the cilia and plasma membranes. Required for ciliogenesis and sonic hedgehog/SHH signaling.

Homo sapiens (taxid: 9606)

>sp|Q503B7|B9D1_DANRE B9 domain-containing protein 1 OS=Danio rerio GN=b9d1 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 40/72 (55%), Positives = 50/72 (69%)

Query: 52  GIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYGL 111
           G+EEGISQI+         VWNFP++I FKS NP GWPQ+++ VYG D FGNDV+RGYG 
Sbjct: 45  GLEEGISQITSKGRLSQSLVWNFPLDITFKSTNPFGWPQIVVSVYGPDTFGNDVVRGYGA 104

Query: 112 CHLPISSGTTAK 123
            H+P + G   K
Sbjct: 105 VHIPFTPGKHTK 116

Component of the tectonic-like complex, a complex localized at the transition zone of primary cilia and acting as a barrier that prevents diffusion of transmembrane proteins between the cilia and plasma membranes. Required for ciliogenesis and sonic hedgehog/SHH signaling.

Danio rerio (taxid: 7955)

>sp|P0C5J3|B9D2_RAT B9 domain-containing protein 2 OS=Rattus norvegicus GN=B9d2 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 48  RKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIR 107
           + L G+ EG +Q+     G   + W+ PI++ F +    GWP+L L V+  D FG   + 
Sbjct: 34  KLLSGVREGQTQVDTPQTGDMAY-WSHPIDLHFATKGLQGWPRLHLQVWSQDSFGRCQLA 92

Query: 108 GYGLCHLPISSGT 120
           GYG CH+P S GT
Sbjct: 93  GYGFCHVPSSPGT 105

Component of the tectonic-like complex, a complex localized at the transition zone of primary cilia and acting as a barrier that prevents diffusion of transmembrane proteins between the cilia and plasma membranes.

Rattus norvegicus (taxid: 10116)

>sp|Q56JY9|B9D2_BOVIN B9 domain-containing protein 2 OS=Bos taurus GN=B9D2 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 48  RKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIR 107
           + L G+ EG +Q+     G   + W+ PI++ F +    GWP+L L V+  D FG   + 
Sbjct: 34  KLLSGVREGQTQVDTPQIGDMAY-WSHPIDLHFATKGLQGWPRLHLQVWSQDSFGRCQLA 92

Query: 108 GYGLCHLPISSGT 120
           GYG CH+P S GT
Sbjct: 93  GYGFCHVPSSPGT 105

Component of the tectonic-like complex, a complex localized at the transition zone of primary cilia and acting as a barrier that prevents diffusion of transmembrane proteins between the cilia and plasma membranes.

Bos taurus (taxid: 9913)

>sp|Q3UK10|B9D2_MOUSE B9 domain-containing protein 2 OS=Mus musculus GN=B9d2 PE=1 SV=2

 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 48  RKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIR 107
           + L G+ EG +Q+     G   + W+ PI++ F +    GWP+L L V+  D FG   + 
Sbjct: 34  KLLSGVREGQTQVDTPQIGDMAY-WSHPIDLHFATKGLQGWPRLHLQVWSQDSFGRCQLA 92

Query: 108 GYGLCHLPISSGT 120
           GYG CH+P S GT
Sbjct: 93  GYGFCHVPSSPGT 105

Component of the tectonic-like complex, a complex localized at the transition zone of primary cilia and acting as a barrier that prevents diffusion of transmembrane proteins between the cilia and plasma membranes.

Mus musculus (taxid: 10090)

>sp|Q9BPU9|B9D2_HUMAN B9 domain-containing protein 2 OS=Homo sapiens GN=B9D2 PE=1 SV=2

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 48  RKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIR 107
           + L G+ EG +Q+     G   + W+ PI++ F +    GWP+L   V+  D FG   + 
Sbjct: 34  KLLSGVREGQTQVDTPQIGDMAY-WSHPIDLHFATKGLQGWPRLHFQVWSQDSFGRCQLA 92

Query: 108 GYGLCHLPISSGT 120
           GYG CH+P S GT
Sbjct: 93  GYGFCHVPSSPGT 105

Component of the tectonic-like complex, a complex localized at the transition zone of primary cilia and acting as a barrier that prevents diffusion of transmembrane proteins between the cilia and plasma membranes.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
239791862	218	ACYPI002076 [Acyrthosiphon pisum]	0.588	0.334	0.635	2e-22
326319998	192	B9 domain-containing protein 1 [Acyrthos	0.709	0.458	0.549	4e-22
340725039	189	PREDICTED: b9 domain-containing protein	0.588	0.386	0.621	4e-20
62858749	198	B9 domain-containing protein 1 [Xenopus	0.580	0.363	0.616	6e-20
350416913	189	PREDICTED: B9 domain-containing protein	0.588	0.386	0.608	7e-20
383859991	189	PREDICTED: B9 domain-containing protein	0.588	0.386	0.608	1e-19
332018722	164	B9 domain-containing protein 1 [Acromyrm	0.588	0.445	0.608	2e-19
118097877	256	PREDICTED: B9 domain-containing protein	0.548	0.265	0.623	2e-19
148229814	198	B9 domain-containing protein 1 [Xenopus	0.548	0.343	0.637	2e-19
322784010	189	hypothetical protein SINV_02231 [Solenop	0.588	0.386	0.594	3e-19

>gi|239791862|dbj|BAH72342.1| ACYPI002076 [Acyrthosiphon pisum]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 47/74 (63%), Positives = 61/74 (82%), Gaps = 1/74 (1%)

Query: 52  GIEEGISQISKHTAG-CPQFVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYG 110
           GIEEGISQI++ +     Q VWNFP++I FKS NPHGWPQLI+ VYGLD FGNDV+RGYG
Sbjct: 48  GIEEGISQIAQKSQDERQQVVWNFPLDISFKSTNPHGWPQLIISVYGLDTFGNDVVRGYG 107

Query: 111 LCHLPISSGTTAKQ 124
           +CHLP+ +G ++++
Sbjct: 108 VCHLPVVNGQSSEE 121

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326319998|ref|NP_001191868.1| B9 domain-containing protein 1 [Acyrthosiphon pisum]

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 50/91 (54%), Positives = 67/91 (73%), Gaps = 3/91 (3%)

Query: 35  CRYLGCLGVSRYLRKLFGIEEGISQISKHTAG-CPQFVWNFPIEIVFKSNNPHGWPQLIL 93
           C+Y    G    +  + GIEEGISQI++ +     Q VWNFP++I FKS NPHGWPQLI+
Sbjct: 33  CKYTFVYGPDWEI--VTGIEEGISQIAQKSQDERQQVVWNFPLDISFKSTNPHGWPQLII 90

Query: 94  CVYGLDGFGNDVIRGYGLCHLPISSGTTAKQ 124
            VYGLD FGNDV+RGYG+CHLP+ +G ++++
Sbjct: 91  SVYGLDTFGNDVVRGYGVCHLPVVNGQSSEE 121

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725039|ref|XP_003400882.1| PREDICTED: b9 domain-containing protein 1-like [Bombus terrestris]

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/74 (62%), Positives = 58/74 (78%), Gaps = 1/74 (1%)

Query: 52  GIEEGISQISKHTAGCPQF-VWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYG 110
           GIEEG++QI K ++      VWNFP+E+ FKS NPHGWPQLI+ VYGLD FG+DVIRGYG
Sbjct: 43  GIEEGLTQICKCSSDPRNLAVWNFPLEVTFKSTNPHGWPQLIMSVYGLDIFGHDVIRGYG 102

Query: 111 LCHLPISSGTTAKQ 124
           +CHLP+ +G   K+
Sbjct: 103 VCHLPLKTGQHEKR 116

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|62858749|ref|NP_001016309.1| B9 domain-containing protein 1 [Xenopus (Silurana) tropicalis] gi|82178527|sp|Q5BJ61.1|B9D1_XENTR RecName: Full=B9 domain-containing protein 1 gi|60550961|gb|AAH91609.1| B9 protein [Xenopus (Silurana) tropicalis] gi|89266875|emb|CAJ83871.1| novel protein similar to eppb9, endothelial precursor protein B9 [Xenopus (Silurana) tropicalis]

 Score =  101 bits (252), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 45/73 (61%), Positives = 54/73 (73%), Gaps = 1/73 (1%)

Query: 52  GIEEGISQISKHTAGCPQ-FVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYG 110
           G+EEGISQI+  + G  Q  VWNFPIEI FKS NP GWPQ+++ VYG D FGNDV+RGYG
Sbjct: 44  GVEEGISQITSKSQGGKQALVWNFPIEITFKSTNPFGWPQIVISVYGPDAFGNDVVRGYG 103

Query: 111 LCHLPISSGTTAK 123
             HLP + G  A+
Sbjct: 104 AVHLPFTPGRHAR 116

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|350416913|ref|XP_003491165.1| PREDICTED: B9 domain-containing protein 1-like [Bombus impatiens]

 Score =  101 bits (251), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/74 (60%), Positives = 58/74 (78%), Gaps = 1/74 (1%)

Query: 52  GIEEGISQISKHTAGCPQF-VWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYG 110
           GIEEG++Q+ K ++      VWNFP+E+ FKS NPHGWPQLI+ VYGLD FG+DVIRGYG
Sbjct: 43  GIEEGLTQMCKCSSDPRNLAVWNFPLEVTFKSTNPHGWPQLIMSVYGLDIFGHDVIRGYG 102

Query: 111 LCHLPISSGTTAKQ 124
           +CHLP+ +G   K+
Sbjct: 103 VCHLPLKTGQHEKR 116

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383859991|ref|XP_003705475.1| PREDICTED: B9 domain-containing protein 1-like [Megachile rotundata]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/74 (60%), Positives = 58/74 (78%), Gaps = 1/74 (1%)

Query: 52  GIEEGISQISKHTAGCPQF-VWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYG 110
           GIEEG++Q+ K ++      VWNFP+EI FKS NPHGWPQLI+ +YGLD FG+DVIRGYG
Sbjct: 43  GIEEGLTQMCKCSSDPRNLAVWNFPLEITFKSTNPHGWPQLIMSIYGLDIFGHDVIRGYG 102

Query: 111 LCHLPISSGTTAKQ 124
           +CHLP+ +G   K+
Sbjct: 103 VCHLPLKTGCHKKR 116

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018722|gb|EGI59294.1| B9 domain-containing protein 1 [Acromyrmex echinatior]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/74 (60%), Positives = 56/74 (75%), Gaps = 1/74 (1%)

Query: 52  GIEEGISQISKHTAGCPQF-VWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYG 110
           GIEEG++Q+ K +       VWNFP+EI FKS NPHGWPQLI+ +YGLD FG DVIRGYG
Sbjct: 43  GIEEGLTQMCKCSNDSRNLAVWNFPLEITFKSTNPHGWPQLIMSIYGLDFFGRDVIRGYG 102

Query: 111 LCHLPISSGTTAKQ 124
           +CHLP+ +G   K+
Sbjct: 103 VCHLPLKTGYHEKR 116

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118097877|ref|XP_414829.2| PREDICTED: B9 domain-containing protein 1 [Gallus gallus]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/69 (62%), Positives = 52/69 (75%), Gaps = 1/69 (1%)

Query: 52  GIEEGISQISKHTAGCPQ-FVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYG 110
           G+EEGISQI+  +   P  FVWNFPIEI FKS NP GWPQ+++ VYG D FGNDV+RGYG
Sbjct: 96  GLEEGISQITSRSDVAPTTFVWNFPIEITFKSTNPAGWPQIVVSVYGPDFFGNDVVRGYG 155

Query: 111 LCHLPISSG 119
             H+P + G
Sbjct: 156 AVHIPFTPG 164

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|148229814|ref|NP_001086557.1| B9 domain-containing protein 1 [Xenopus laevis] gi|82182858|sp|Q6DFD7.1|B9D1_XENLA RecName: Full=B9 domain-containing protein 1 gi|49899788|gb|AAH76802.1| MGC83744 protein [Xenopus laevis]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/69 (63%), Positives = 53/69 (76%), Gaps = 1/69 (1%)

Query: 52  GIEEGISQISKHTAGCPQ-FVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYG 110
           GIEEGISQI+  + G  Q  VWNFP+EI FKS NP+GWPQ+++ VYG D FGNDV+RGYG
Sbjct: 44  GIEEGISQITSKSQGGKQTLVWNFPVEITFKSTNPYGWPQIVISVYGPDVFGNDVVRGYG 103

Query: 111 LCHLPISSG 119
             HLP + G
Sbjct: 104 AVHLPFTPG 112

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|322784010|gb|EFZ11150.1| hypothetical protein SINV_02231 [Solenopsis invicta]

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/74 (59%), Positives = 57/74 (77%), Gaps = 1/74 (1%)

Query: 52  GIEEGISQISKHTAGCPQF-VWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYG 110
           GIEEG++Q+ K +       VWNFP++I FKS NPHGWPQLI+ +YGLD FG+DVIRGYG
Sbjct: 43  GIEEGLTQMCKCSNDPRNLAVWNFPLDITFKSTNPHGWPQLIMSIYGLDFFGHDVIRGYG 102

Query: 111 LCHLPISSGTTAKQ 124
           +CHLP+ +G   K+
Sbjct: 103 VCHLPLKTGRHEKR 116

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
UNIPROTKB|Q5BJ61	198	b9d1 "B9 domain-containing pro	0.580	0.363	0.630	1.9e-21
UNIPROTKB|Q6DFD7	198	b9d1 "B9 domain-containing pro	0.548	0.343	0.652	3.9e-21
MGI|MGI:1351471	204	B9d1 "B9 protein domain 1" [Mu	0.669	0.406	0.523	1.3e-20
UNIPROTKB|E1BKI6	204	B9D1 "Uncharacterized protein"	0.701	0.426	0.522	1.7e-20
UNIPROTKB|E1BZ68	206	B9D1 "Uncharacterized protein"	0.548	0.330	0.623	2.1e-20
UNIPROTKB|Q9UPM9	204	B9D1 "B9 domain-containing pro	0.669	0.406	0.523	2.1e-20
RGD|1305522	204	B9d1 "B9 protein domain 1" [Ra	0.669	0.406	0.523	2.1e-20
ZFIN|ZDB-GENE-050522-467	252	b9d1 "B9 protein domain 1" [Da	0.701	0.345	0.483	1.5e-19
FB|FBgn0038342	241	CG14870 [Drosophila melanogast	0.524	0.269	0.373	7.9e-11
RGD|1566122	175	B9d2 "B9 protein domain 2" [Ra	0.564	0.4	0.394	3.2e-10

UNIPROTKB|Q5BJ61 b9d1 "B9 domain-containing protein 1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 46/73 (63%), Positives = 53/73 (72%)

Query:    52 GIEEGISQI-SKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYG 110
             G+EEGISQI SK   G    VWNFPIEI FKS NP GWPQ+++ VYG D FGNDV+RGYG
Sbjct:    44 GVEEGISQITSKSQGGKQALVWNFPIEITFKSTNPFGWPQIVISVYGPDAFGNDVVRGYG 103

Query:   111 LCHLPISSGTTAK 123
               HLP + G  A+
Sbjct:   104 AVHLPFTPGRHAR 116

GO:0005813 "centrosome" evidence=ISS

GO:0005932 "microtubule basal body" evidence=ISS

GO:0007224 "smoothened signaling pathway" evidence=ISS

GO:0035869 "ciliary transition zone" evidence=ISS

GO:0036038 "TCTN-B9D complex" evidence=ISS

GO:0042384 "cilium assembly" evidence=ISS

UNIPROTKB|Q6DFD7 b9d1 "B9 domain-containing protein 1" [Xenopus laevis (taxid:8355)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 45/69 (65%), Positives = 52/69 (75%)

Query:    52 GIEEGISQI-SKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYG 110
             GIEEGISQI SK   G    VWNFP+EI FKS NP+GWPQ+++ VYG D FGNDV+RGYG
Sbjct:    44 GIEEGISQITSKSQGGKQTLVWNFPVEITFKSTNPYGWPQIVISVYGPDVFGNDVVRGYG 103

Query:   111 LCHLPISSG 119
               HLP + G
Sbjct:   104 AVHLPFTPG 112

GO:0005813 "centrosome" evidence=ISS

GO:0005932 "microtubule basal body" evidence=ISS

GO:0007224 "smoothened signaling pathway" evidence=ISS

GO:0035869 "ciliary transition zone" evidence=ISS

GO:0036038 "TCTN-B9D complex" evidence=ISS

GO:0042384 "cilium assembly" evidence=ISS

MGI|MGI:1351471 B9d1 "B9 protein domain 1" [Mus musculus (taxid:10090)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 45/86 (52%), Positives = 58/86 (67%)

Query:    35 CRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQ-FVWNFPIEIVFKSNNPHGWPQLIL 93
             C+Y  C    +      G+EEGISQI+  +    Q  VWNFPI++ FKS NP+GWPQ++L
Sbjct:    30 CKY--CFVYGQDWAPTAGLEEGISQIASKSQDVRQALVWNFPIDVTFKSTNPYGWPQIVL 87

Query:    94 CVYGLDGFGNDVIRGYGLCHLPISSG 119
              VYG D FGNDV+RGYG  H+P+S G
Sbjct:    88 SVYGPDVFGNDVVRGYGAVHVPLSPG 113

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005929 "cilium" evidence=IEA

GO:0005932 "microtubule basal body" evidence=ISO

GO:0007224 "smoothened signaling pathway" evidence=IMP

GO:0008158 "hedgehog receptor activity" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0030030 "cell projection organization" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IMP

GO:0035051 "cardiocyte differentiation" evidence=IMP

GO:0035869 "ciliary transition zone" evidence=IDA

GO:0036038 "TCTN-B9D complex" evidence=IDA

GO:0042384 "cilium assembly" evidence=IMP

GO:0042733 "embryonic digit morphogenesis" evidence=IMP

GO:0042995 "cell projection" evidence=IEA

GO:0043010 "camera-type eye development" evidence=IMP

GO:0060271 "cilium morphogenesis" evidence=IMP

GO:0060563 "neuroepithelial cell differentiation" evidence=IMP

UNIPROTKB|E1BKI6 B9D1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 47/90 (52%), Positives = 58/90 (64%)

Query:    35 CRYLGCLGVSRYLRKLFGIEEGISQI-SKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLIL 93
             C+Y  C    +      G+EEGISQI SK        VWNFPI++ FKS NP+GWPQ++L
Sbjct:    30 CKY--CFVYGQDWAPTAGLEEGISQITSKSQDARRALVWNFPIDVTFKSTNPYGWPQIVL 87

Query:    94 CVYGLDGFGNDVIRGYGLCHLPISSGTTAK 123
              VYG D FGNDV+RGYG  H+P+S G   K
Sbjct:    88 SVYGPDVFGNDVVRGYGAVHVPLSPGRHKK 117

GO:0060271 "cilium morphogenesis" evidence=IEA

GO:0036038 "TCTN-B9D complex" evidence=IEA

GO:0008158 "hedgehog receptor activity" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

UNIPROTKB|E1BZ68 B9D1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 43/69 (62%), Positives = 52/69 (75%)

Query:    52 GIEEGISQISKHTAGCPQ-FVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYG 110
             G+EEGISQI+  +   P  FVWNFPIEI FKS NP GWPQ+++ VYG D FGNDV+RGYG
Sbjct:    46 GLEEGISQITSRSDVAPTTFVWNFPIEITFKSTNPAGWPQIVVSVYGPDFFGNDVVRGYG 105

Query:   111 LCHLPISSG 119
               H+P + G
Sbjct:   106 AVHIPFTPG 114

GO:0005813 "centrosome" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0008158 "hedgehog receptor activity" evidence=IEA

GO:0036038 "TCTN-B9D complex" evidence=IEA

GO:0060271 "cilium morphogenesis" evidence=IEA

UNIPROTKB|Q9UPM9 B9D1 "B9 domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 45/86 (52%), Positives = 57/86 (66%)

Query:    35 CRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQ-FVWNFPIEIVFKSNNPHGWPQLIL 93
             C+Y  C    +      G+EEGISQI+  +    Q  VWNFPI++ FKS NP+GWPQ++L
Sbjct:    30 CKY--CFVYGQDWAPTAGLEEGISQITSKSQDVRQALVWNFPIDVTFKSTNPYGWPQIVL 87

Query:    94 CVYGLDGFGNDVIRGYGLCHLPISSG 119
              VYG D FGNDV+RGYG  H+P S G
Sbjct:    88 SVYGPDVFGNDVVRGYGAVHVPFSPG 113

GO:0035085 "cilium axoneme" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:0036038 "TCTN-B9D complex" evidence=ISS

GO:0007224 "smoothened signaling pathway" evidence=ISS

GO:0042384 "cilium assembly" evidence=ISS

GO:0035869 "ciliary transition zone" evidence=ISS

GO:0008158 "hedgehog receptor activity" evidence=ISS

GO:0060271 "cilium morphogenesis" evidence=ISS

RGD|1305522 B9d1 "B9 protein domain 1" [Rattus norvegicus (taxid:10116)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 45/86 (52%), Positives = 57/86 (66%)

Query:    35 CRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQ-FVWNFPIEIVFKSNNPHGWPQLIL 93
             C+Y  C    +      G+EEGISQI+  +    Q  VWNFPI++ FKS NP+GWPQ++L
Sbjct:    30 CKY--CFVYGQDWAPTAGLEEGISQIASKSQDVRQALVWNFPIDVTFKSTNPYGWPQIVL 87

Query:    94 CVYGLDGFGNDVIRGYGLCHLPISSG 119
              VYG D FGNDV+RGYG  H+P S G
Sbjct:    88 SVYGPDVFGNDVVRGYGAVHVPFSPG 113

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=ISO;ISS

GO:0005932 "microtubule basal body" evidence=ISO;ISS

GO:0007224 "smoothened signaling pathway" evidence=ISO;ISS

GO:0008158 "hedgehog receptor activity" evidence=ISO;ISS

GO:0016020 "membrane" evidence=ISO

GO:0032880 "regulation of protein localization" evidence=ISO

GO:0035051 "cardiocyte differentiation" evidence=ISO

GO:0035869 "ciliary transition zone" evidence=ISO;ISS

GO:0036038 "TCTN-B9D complex" evidence=ISO;ISS

GO:0042384 "cilium assembly" evidence=ISO;ISS

GO:0042733 "embryonic digit morphogenesis" evidence=ISO

GO:0043010 "camera-type eye development" evidence=ISO

GO:0060271 "cilium morphogenesis" evidence=ISO;ISS

GO:0060563 "neuroepithelial cell differentiation" evidence=ISO

ZFIN|ZDB-GENE-050522-467 b9d1 "B9 protein domain 1" [Danio rerio (taxid:7955)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 43/89 (48%), Positives = 54/89 (60%)

Query:    35 CRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILC 94
             C+Y  C           G+EEGISQI+         VWNFP++I FKS NP GWPQ+++ 
Sbjct:    85 CKY--CFVYGHDWAPTSGLEEGISQITSKGRLSQSLVWNFPLDITFKSTNPFGWPQIVVS 142

Query:    95 VYGLDGFGNDVIRGYGLCHLPISSGTTAK 123
             VYG D FGNDV+RGYG  H+P + G   K
Sbjct:   143 VYGPDTFGNDVVRGYGAVHIPFTPGKHTK 171

GO:0005813 "centrosome" evidence=ISS

GO:0007224 "smoothened signaling pathway" evidence=ISS

GO:0042384 "cilium assembly" evidence=ISS

GO:0005932 "microtubule basal body" evidence=ISS

GO:0008158 "hedgehog receptor activity" evidence=ISS

GO:0035869 "ciliary transition zone" evidence=ISS

GO:0036038 "TCTN-B9D complex" evidence=ISS

GO:0042995 "cell projection" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030030 "cell projection organization" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

FB|FBgn0038342 CG14870 [Drosophila melanogaster (taxid:7227)]

 Score = 151 (58.2 bits), Expect = 7.9e-11, P = 7.9e-11
 Identities = 25/67 (37%), Positives = 43/67 (64%)

Query:    52 GIEEGISQISKHTAGC--PQFVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGY 109
             G + G++Q++ +  G      V+N PIE+ +KS +P+GWPQ+++ V+G  G G + + GY
Sbjct:    92 GPQHGLTQLATNRRGHFNEPIVFNMPIEVTYKSTSPYGWPQILVTVFGRSGLGRETLLGY 151

Query:   110 GLCHLPI 116
                HLP+
Sbjct:   152 AHIHLPV 158

GO:0042384 "cilium assembly" evidence=ISM;IEP

GO:0035869 "ciliary transition zone" evidence=IDA

RGD|1566122 B9d2 "B9 protein domain 2" [Rattus norvegicus (taxid:10116)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 28/71 (39%), Positives = 40/71 (56%)

Query:    50 LFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGY 109
             L G+ EG +Q+     G   + W+ PI++ F +    GWP+L L V+  D FG   + GY
Sbjct:    36 LSGVREGQTQVDTPQTGDMAY-WSHPIDLHFATKGLQGWPRLHLQVWSQDSFGRCQLAGY 94

Query:   110 GLCHLPISSGT 120
             G CH+P S GT
Sbjct:    95 GFCHVPSSPGT 105

GO:0005634 "nucleus" evidence=IEA

GO:0005813 "centrosome" evidence=IEA;ISO;ISS

GO:0005932 "microtubule basal body" evidence=IEA;ISO;ISS

GO:0016020 "membrane" evidence=ISO

GO:0035085 "cilium axoneme" evidence=IEA

GO:0036038 "TCTN-B9D complex" evidence=IEA;ISO;ISS

GO:0042384 "cilium assembly" evidence=IEA;ISO;ISS

GO:0043015 "gamma-tubulin binding" evidence=IEA;ISO;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9UPM9	B9D1_HUMAN	No assigned EC number	0.5232	0.6693	0.4068	yes	N/A
Q503B7	B9D1_DANRE	No assigned EC number	0.5555	0.5806	0.3582	yes	N/A
P0C5J2	B9D1_RAT	No assigned EC number	0.5232	0.6693	0.4068	yes	N/A
Q9R1S0	B9D1_MOUSE	No assigned EC number	0.5232	0.6693	0.4068	yes	N/A
Q5BJ61	B9D1_XENTR	No assigned EC number	0.6164	0.5806	0.3636	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	124
pfam07162	165	pfam07162, B9-C2, Ciliary basal body-associated, B	5e-24

>gnl|CDD|219316 pfam07162, B9-C2, Ciliary basal body-associated, B9 protein

 Score = 90.0 bits (224), Expect = 5e-24
 Identities = 25/69 (36%), Positives = 42/69 (60%)

Query: 52  GIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYGL 111
           G+  G +Q ++        V+N P ++  K+ NP GWPQL++ V+ LD +G + + GYG 
Sbjct: 36  GLTSGQTQTARSAGNDDVAVFNHPFDLHLKTTNPFGWPQLVVTVWSLDSWGRERLEGYGA 95

Query: 112 CHLPISSGT 120
           CH+P++ G 
Sbjct: 96  CHVPLTPGK 104

The B9-C2 domain is found in proteins associated with the ciliary basal body. B9 domains were identified as a specific family of C2 domains. There are three sub-families represented by this family, notably, Mks1-Xbx7, Stumpy-Tza1 and Tza2 groups of proteins. Mutations in human Mks1 result in the developmental disorder Mechler-Gruber syndrome; mutations in mouse Stumpy lead to perinatal hydrocephalus and severe polycystic kidney disease. All the three distinct types of B9-C2 proteins cooperatively localise to the basal body or centrosome of cilia. Length = 165

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	124
PF07162	168	B9-C2: Ciliary basal body-associated, B9 protein;	100.0
KOG4028|consensus	175		100.0
KOG4027|consensus	187		100.0
KOG4446|consensus	471		99.68
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	95.2
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	94.21
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	93.14
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	92.18
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	91.53
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	91.21
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	89.27
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	89.09
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	88.11
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	87.4
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	87.22
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	86.58
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	84.64
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	84.37
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	83.9
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	83.89
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	83.67
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	83.44
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	83.21
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	82.41
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	82.24
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	81.68
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	81.67
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	80.53
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	80.08

>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species

Probab=100.00  E-value=8.2e-43  Score=262.59  Aligned_cols=107  Identities=39%  Similarity=0.740  Sum_probs=101.3

Q ss_pred             EEEE-eeeeeecCCCCCCceEEEeeeeeecCCCCeecCCce-eeeeEEeeCCC-CCCc-eEEecceEEEEEeCCCCCCCe
Q psy5514          15 QLHI-TQLFKIGHTEVGTLGVCRYLGCLGVSRYLRKLFGIE-EGISQISKHTA-GCPQ-FVWNFPIEIVFKSNNPHGWPQ   90 (124)
Q Consensus        15 ~l~i-GeIv~a~~F~~~~~L~c~y~~~~~~g~~W~~~~G~~-~G~TQ~~~~~~-~~~~-~~w~~P~di~f~s~~~~gWP~   90 (124)
                      |||| |||++|.+|++ ++|||||  .+++|++|++++|.. +|+||+|.+.. +.++ ++||||||+||++++++||||
T Consensus         1 ~v~v~G~I~~a~~f~~-~~l~~~y--~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~   77 (168)
T PF07162_consen    1 EVHVIGEIESAEGFEE-DNLYCRY--QLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQ   77 (168)
T ss_pred             CEEEEEEEEEEECCCC-CCEEEEE--EEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCce
Confidence            6899 99999999999 9999999  999999999999999 99999998655 2344 999999999999999999999


Q ss_pred             EEEEEEeeeCCCCeEEEeEeEEEeCCCCceeeeC
Q psy5514          91 LILCVYGLDGFGNDVIRGYGLCHLPISSGTTAKQ  124 (124)
Q Consensus        91 L~l~V~~~D~~gR~~~~GYG~~~lP~~pG~h~~~  124 (124)
                      |+|+||++|.|||++++|||+++||++||+|+++
T Consensus        78 L~l~V~~~D~~gr~~~~GYG~~~lP~~pG~h~~~  111 (168)
T PF07162_consen   78 LVLQVYSLDSWGRDRVEGYGFCHLPTQPGRHEVE  111 (168)
T ss_pred             EEEEEEEEcccCCeEEeEEeEEEeCCCCceEEEE
Confidence            9999999999999999999999999999999874

Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.

>KOG4028|consensus

Probab=100.00  E-value=1.4e-39  Score=241.08  Aligned_cols=108  Identities=25%  Similarity=0.459  Sum_probs=102.1

Q ss_pred             eeEEEE-eeeeeecCCCCCCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeE
Q psy5514          13 CKQLHI-TQLFKIGHTEVGTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQL   91 (124)
Q Consensus        13 ~~~l~i-GeIv~a~~F~~~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L   91 (124)
                      ++|+++ |||++|.+|.+ +.|||||  .+..|..|++++|..|||||++++... +.++|+||||+||+|++++|||+|
T Consensus         1 maev~v~gqil~a~gf~d-n~l~~k~--~i~~g~~wkllqg~~egqtq~d~pqi~-d~a~~ahpidlh~at~~iqgwprl   76 (175)
T KOG4028|consen    1 MAEVFVIGQILGARGFGD-NRLFCKW--GIHFGAAWKLLQGEREGQTQTDCPQIF-DMAHFAHPIDLHFATKGIQGWPRL   76 (175)
T ss_pred             CceEEEEeeEeeccccCC-CceEEEE--eeeccceeeeeeccccCccccCCchhh-hhhhhcCcceeeeecccccCCcee
Confidence            589999 99999999999 9999999  999999999999999999999986333 339999999999999999999999


Q ss_pred             EEEEEeeeCCCCeEEEeEeEEEeCCCCceeeeC
Q psy5514          92 ILCVYGLDGFGNDVIRGYGLCHLPISSGTTAKQ  124 (124)
Q Consensus        92 ~l~V~~~D~~gR~~~~GYG~~~lP~~pG~h~~~  124 (124)
                      .||||+.|++||..+.|||+||||++||+|.+.
T Consensus        77 ~~qiw~~dnfgr~eiagyg~~~lpsspgkh~la  109 (175)
T KOG4028|consen   77 HFQIWHHDNFGRCEIAGYGFCHLPSSPGKHQLA  109 (175)
T ss_pred             eeeeeecCcccceeecccceEeccCCCCcceec
Confidence            999999999999999999999999999999873

>KOG4027|consensus

Probab=100.00  E-value=3.3e-36  Score=227.47  Aligned_cols=112  Identities=32%  Similarity=0.509  Sum_probs=105.4

Q ss_pred             cCceeEEEE-eeeeeecCCCCCCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCc-eEEecceEEEEEeCCCCC
Q psy5514          10 YGSCKQLHI-TQLFKIGHTEVGTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQ-FVWNFPIEIVFKSNNPHG   87 (124)
Q Consensus        10 ~~~~~~l~i-GeIv~a~~F~~~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~-~~w~~P~di~f~s~~~~g   87 (124)
                      +++-+-|.| |||++|. ||+.+++||||  ++++|+||++++|.+||+||++...++-++ ++||+|||++||++||+|
T Consensus         5 ~as~f~L~i~Gqv~sa~-FPe~~dv~~ky--~~Vag~DW~~~~Gpqegvsq~s~~~r~~~~~iv~n~Pievt~KstsPyg   81 (187)
T KOG4027|consen    5 KASSFVLTIHGQVRSAE-FPEESDVCVKY--STVAGGDWKIINGPQEGVSQSSFSFRGADNQIVINLPIEVTLKSTSPYG   81 (187)
T ss_pred             cccEEEEEEeeeEEEee-cCCCCceEEEE--EEEecCCceeccCcccchhhheeccccCCCceEEecceEEEeccCCCCC
Confidence            567788999 9999987 88889999999  999999999999999999999987776666 999999999999999999


Q ss_pred             CCeEEEEEEeeeCCCCeEEEeEeEEEeCCCCceeeeC
Q psy5514          88 WPQLILCVYGLDGFGNDVIRGYGLCHLPISSGTTAKQ  124 (124)
Q Consensus        88 WP~L~l~V~~~D~~gR~~~~GYG~~~lP~~pG~h~~~  124 (124)
                      ||||++.|++.|-+||+.+.|||.+|||..||+|.++
T Consensus        82 WPqivl~vfg~d~~G~d~v~GYg~~hiP~~pgrh~~~  118 (187)
T KOG4027|consen   82 WPQIVLNVFGKDHSGKDCVTGYGMLHIPTEPGRHVCR  118 (187)
T ss_pred             CceEEEEEecCCcCCcceeeeeeeEecCcCCCceeEE
Confidence            9999999999999999999999999999999999863

>KOG4446|consensus

Probab=99.68  E-value=2.4e-17  Score=138.27  Aligned_cols=115  Identities=22%  Similarity=0.231  Sum_probs=97.3

Q ss_pred             EEeecCce-eEEEE-eeeeeecCCCCCCceEEEeeeeeecCC-CC-eecCCceeeeeEEeeCCCCCCc-eEEecceEEEE
Q psy5514           6 TVNVYGSC-KQLHI-TQLFKIGHTEVGTLGVCRYLGCLGVSR-YL-RKLFGIEEGISQISKHTAGCPQ-FVWNFPIEIVF   80 (124)
Q Consensus         6 ~~~~~~~~-~~l~i-GeIv~a~~F~~~~~L~c~y~~~~~~g~-~W-~~~~G~~~G~TQ~~~~~~~~~~-~~w~~P~di~f   80 (124)
                      +.+|.++. .|+.+ +|+++|.+|++ +||+++|  .+..+. .| +......+|.||+|..+....+ +++|||+-++|
T Consensus       213 ~Fem~~~g~~r~~v~~eli~gqnfe~-dnl~V~y--~l~~P~ah~~~p~~~~~~G~TqTCr~~s~~~d~ah~~~~~~~e~  289 (471)
T KOG4446|consen  213 TFEMARDGLVRTVVHVELIKGQNFEF-DNLTVDY--KLQMPRAHGIKPKSENATGRTQTCRYSSAEQDGAHINFGYFLEF  289 (471)
T ss_pred             eeecCcCccEEEEEEEEEeecccccc-CceEEEE--EEecchhccCCcccccccCcchhcccchhhhccCccccceEEEE
Confidence            45776665 88999 99999999999 9999999  999988 45 3444578999999987666655 99999988875


Q ss_pred             --EeC--CCCCCCeEEEEEEeeeCCCCeEEEeEeEEEeCCCCceeee
Q psy5514          81 --KSN--NPHGWPQLILCVYGLDGFGNDVIRGYGLCHLPISSGTTAK  123 (124)
Q Consensus        81 --~s~--~~~gWP~L~l~V~~~D~~gR~~~~GYG~~~lP~~pG~h~~  123 (124)
                        .+.  |-.--|-|.++|.++|+|+|++++|||+..||.+||.|+.
T Consensus       290 ~fe~~de~tD~lp~Ly~ev~svD~WqR~rieGYg~~~vplTpg~~t~  336 (471)
T KOG4446|consen  290 VFESRDENTDFLPLLYLEVMSVDYWQRQRIEGYGSGYVPLTPGKSTS  336 (471)
T ss_pred             EeecccCccchhhHHHHhheehhhhhhhhccccceeEEecCCCCCcc
Confidence              443  5556799999999999999999999999999999999864

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=95.20  E-value=0.39  Score=29.82  Aligned_cols=65  Identities=20%  Similarity=0.260  Sum_probs=43.9

Q ss_pred             CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEEEEeeeCCCCeEEEeE
Q psy5514          30 GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGY  109 (124)
Q Consensus        30 ~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~V~~~D~~gR~~~~GY  109 (124)
                      ..+.||+.  .+.....       ....|.+.   .+.....|+..|.+........   .|.|+||..|..+++...|.
T Consensus        19 ~~~~yv~v--~~~~~~~-------~~~~T~~~---~~~~~P~w~e~~~~~~~~~~~~---~l~~~V~~~~~~~~~~~iG~   83 (85)
T PF00168_consen   19 KPDPYVRV--SVNGSES-------TKYKTKVK---KNTSNPVWNEEFEFPLDDPDLD---SLSFEVWDKDSFGKDELIGE   83 (85)
T ss_dssp             SBEEEEEE--EEETTTC-------EEEEECCB---SSBSSEEEEEEEEEEESHGCGT---EEEEEEEEETSSSSEEEEEE
T ss_pred             ccccccee--ecceeee-------eeeeeeee---eccccceeeeeeeeeeeccccc---ceEEEEEECCCCCCCCEEEE
Confidence            36799999  7666444       22333332   2223389998888775443332   29999999999999998885

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=94.21  E-value=0.96  Score=32.24  Aligned_cols=72  Identities=15%  Similarity=0.218  Sum_probs=49.5

Q ss_pred             CceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEEEEeeeCCCCeEEEeEe
Q psy5514          31 TLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYG  110 (124)
Q Consensus        31 ~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~V~~~D~~gR~~~~GYG  110 (124)
                      .+-||+-  .+          |...-.|.+...  +..+-.||.=|.+..... .   -.|.|+||..|..+++...|.+
T Consensus        22 sDPYv~i--~l----------g~~~~kT~v~~~--~~~nP~WNe~F~f~v~~~-~---~~l~~~V~d~d~~~~dd~iG~~   83 (121)
T cd04016          22 MDPYCRI--RV----------GHAVYETPTAYN--GAKNPRWNKTIQCTLPEG-V---DSIYIEIFDERAFTMDERIAWT   83 (121)
T ss_pred             CCceEEE--EE----------CCEEEEeEEccC--CCCCCccCeEEEEEecCC-C---cEEEEEEEeCCCCcCCceEEEE
Confidence            5679988  55          223345666532  222378887776665332 1   3699999999999999999999


Q ss_pred             EEEeCC--CCce
Q psy5514         111 LCHLPI--SSGT  120 (124)
Q Consensus       111 ~~~lP~--~pG~  120 (124)
                      .+.||.  .+|.
T Consensus        84 ~i~l~~~~~~g~   95 (121)
T cd04016          84 HITIPESVFNGE   95 (121)
T ss_pred             EEECchhccCCC
Confidence            999973  4553

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=93.14  E-value=0.79  Score=33.58  Aligned_cols=77  Identities=18%  Similarity=0.156  Sum_probs=50.7

Q ss_pred             CceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCc-eEEecceEEEEEeCC------------------CCCCCeE
Q psy5514          31 TLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQ-FVWNFPIEIVFKSNN------------------PHGWPQL   91 (124)
Q Consensus        31 ~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~-~~w~~P~di~f~s~~------------------~~gWP~L   91 (124)
                      +.+|+|=  .+.-.       ....-.|-+-+++.+.+. ++|.|-|++.+....                  -..=|+|
T Consensus        25 sD~yVK~--~L~~~-------~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L   95 (133)
T cd08374          25 SDIYVKG--WLDGL-------EEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKL   95 (133)
T ss_pred             cCeEEEE--EEccC-------cccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccccccCcceEecCcEE
Confidence            6789987  44432       223334555554444334 899988888773221                  1223999


Q ss_pred             EEEEEeeeCCCCeEEEeEeEEEeCC
Q psy5514          92 ILCVYGLDGFGNDVIRGYGLCHLPI  116 (124)
Q Consensus        92 ~l~V~~~D~~gR~~~~GYG~~~lP~  116 (124)
                      .++||-.|.++++...|.-.+.|-.
T Consensus        96 ~lqvwD~D~~s~dd~iG~~~l~l~~  120 (133)
T cd08374          96 TLQVWDNDKFSPDDFLGSLELDLSI  120 (133)
T ss_pred             EEEEEECcccCCCCcceEEEEEhhh
Confidence            9999999999999988876665543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=92.18  E-value=2.7  Score=28.90  Aligned_cols=87  Identities=14%  Similarity=0.108  Sum_probs=56.0

Q ss_pred             EEEE-eeeeeecCCCCCCceEEEeeeeeecCC--CCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeE
Q psy5514          15 QLHI-TQLFKIGHTEVGTLGVCRYLGCLGVSR--YLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQL   91 (124)
Q Consensus        15 ~l~i-GeIv~a~~F~~~~~L~c~y~~~~~~g~--~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L   91 (124)
                      ++.| ++-+...++....+-||+-  .+....  .|.     ....|.+-..   ..+-+||--|.+.+....   -..|
T Consensus         4 ~~~i~a~~L~~~d~~g~~DPyv~v--~~~~~~~~~~~-----~~~kT~vi~~---t~nP~wne~f~f~~~~~~---~~~l   70 (120)
T cd04048           4 ELSISCRNLLDKDVLSKSDPFVVV--YVKTGGSGQWV-----EIGRTEVIKN---NLNPDFVTTFTVDYYFEE---VQKL   70 (120)
T ss_pred             EEEEEccCCCCCCCCCCCCcEEEE--EEEcCCCCceE-----EeccEeEeCC---CCCCCceEEEEEEEEeEe---eeEE
Confidence            4556 6656555544446779998  776654  332     2355665442   122678766666543222   3589


Q ss_pred             EEEEEeeeC----CCCeEEEeEeEEEe
Q psy5514          92 ILCVYGLDG----FGNDVIRGYGLCHL  114 (124)
Q Consensus        92 ~l~V~~~D~----~gR~~~~GYG~~~l  114 (124)
                      .|+||..|.    .+++.+.|...+.+
T Consensus        71 ~~~V~d~d~~~~~~~~~d~iG~~~i~l   97 (120)
T cd04048          71 RFEVYDVDSKSKDLSDHDFLGEAECTL   97 (120)
T ss_pred             EEEEEEecCCcCCCCCCcEEEEEEEEH
Confidence            999999998    88999999887765

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=91.53  E-value=3.2  Score=29.02  Aligned_cols=78  Identities=15%  Similarity=0.150  Sum_probs=53.2

Q ss_pred             eeeeeecCCCCCCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEEEEee
Q psy5514          19 TQLFKIGHTEVGTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCVYGL   98 (124)
Q Consensus        19 GeIv~a~~F~~~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~V~~~   98 (124)
                      +++.....+.. .+-||+-  .+.         +...+.|-+..   +..+-.||..|+++....     -.|.|+||..
T Consensus        11 a~l~~~~~~~~-~dPyv~v--~~~---------~~~~~kT~v~~---~t~~P~Wne~f~~~~~~~-----~~l~~~V~d~   70 (125)
T cd04021          11 AKLKSNSKSFK-PDPYVEV--TVD---------GQPPKKTEVSK---KTSNPKWNEHFTVLVTPQ-----STLEFKVWSH   70 (125)
T ss_pred             eECCCCCcCCC-CCeEEEE--EEC---------CcccEEeeeeC---CCCCCccccEEEEEeCCC-----CEEEEEEEeC
Confidence            44444555544 6789988  652         22345555543   222389999888886432     4799999999


Q ss_pred             eCCCCeEEEeEeEEEeCC
Q psy5514          99 DGFGNDVIRGYGLCHLPI  116 (124)
Q Consensus        99 D~~gR~~~~GYG~~~lP~  116 (124)
                      |..+++...|...+.|..
T Consensus        71 ~~~~~~~~iG~~~i~l~~   88 (125)
T cd04021          71 HTLKADVLLGEASLDLSD   88 (125)
T ss_pred             CCCCCCcEEEEEEEEHHH
Confidence            999999999999888643

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=91.21  E-value=2  Score=30.20  Aligned_cols=82  Identities=12%  Similarity=0.092  Sum_probs=50.0

Q ss_pred             eeeecCCC-----CCCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEEE
Q psy5514          21 LFKIGHTE-----VGTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCV   95 (124)
Q Consensus        21 Iv~a~~F~-----~~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~V   95 (124)
                      |++|.+.+     ...+-||+-  .+......     .....|.+.   .+.-+.+||-.|.+.+....... ..|.|+|
T Consensus        20 v~~A~~L~~~d~~g~~dpyvkv--~l~~~~~~-----~~~~kT~v~---~~t~nP~wne~f~f~i~~~~~~~-~~l~~~v   88 (134)
T cd08403          20 IIKARNLKAMDITGFSDPYVKV--SLMCEGRR-----LKKKKTSVK---KNTLNPTYNEALVFDVPPENVDN-VSLIIAV   88 (134)
T ss_pred             EEEeeCCCccccCCCCCceEEE--EEEeCCcc-----cceecCCcc---cCCCCCcccceEEEECCHHHhCC-CEEEEEE
Confidence            45555443     336778888  65432111     112233332   12223789888888765444432 4589999


Q ss_pred             EeeeCCCCeEEEeEeEEE
Q psy5514          96 YGLDGFGNDVIRGYGLCH  113 (124)
Q Consensus        96 ~~~D~~gR~~~~GYG~~~  113 (124)
                      |..|..|++++.|...+.
T Consensus        89 ~d~~~~~~~~~IG~~~l~  106 (134)
T cd08403          89 VDYDRVGHNELIGVCRVG  106 (134)
T ss_pred             EECCCCCCCceeEEEEEC
Confidence            999999999999977764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=89.27  E-value=5  Score=27.27  Aligned_cols=72  Identities=15%  Similarity=0.089  Sum_probs=46.6

Q ss_pred             CceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEEEEeeeCCCCeEEEeEe
Q psy5514          31 TLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYG  110 (124)
Q Consensus        31 ~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~V~~~D~~gR~~~~GYG  110 (124)
                      .+-||+-  .+..       .+.....|.+..   +..+-+||..|.+.....+...=-.|.++||..|..+++...|..
T Consensus        23 ~Dpyv~v--~~~~-------~~~~~~kT~v~~---~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~   90 (111)
T cd04041          23 SDPYVTA--SFAK-------FGKPLYSTRIIR---KDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRV   90 (111)
T ss_pred             CCccEEE--EEcc-------CCCccEeeeeEC---CCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEE
Confidence            5678888  6532       122234555543   222378999888766543322224799999999999999988877


Q ss_pred             EEEe
Q psy5514         111 LCHL  114 (124)
Q Consensus       111 ~~~l  114 (124)
                      .+.+
T Consensus        91 ~i~l   94 (111)
T cd04041          91 EIDL   94 (111)
T ss_pred             EEEH
Confidence            7655

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd04032 C2_Perforin C2 domain of Perforin

Probab=89.09  E-value=4.1  Score=29.25  Aligned_cols=50  Identities=20%  Similarity=0.262  Sum_probs=35.4

Q ss_pred             eEEecceEEEEEeCCCCCCCeEEEEEEeeeCCCCeEEEeEeEEEeCCCCceeee
Q psy5514          70 FVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYGLCHLPISSGTTAK  123 (124)
Q Consensus        70 ~~w~~P~di~f~s~~~~gWP~L~l~V~~~D~~gR~~~~GYG~~~lP~~pG~h~~  123 (124)
                      .+||.-|.+....-...  =.|.|+||..|..+++...|.  +.+|...|.|.+
T Consensus        72 PvWNE~F~f~~~~~~~~--~~L~v~V~D~d~~s~dd~IG~--~~i~l~~~~~~~  121 (127)
T cd04032          72 PRWNATFDFGSVELSPG--GKLRFEVWDRDNGWDDDLLGT--CSVVPEAGVHED  121 (127)
T ss_pred             CcCCCEEEEecccCCCC--CEEEEEEEeCCCCCCCCeeEE--EEEEecCCceee
Confidence            78988777653221111  379999999999999999885  555556777764

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=88.11  E-value=4  Score=27.75  Aligned_cols=76  Identities=16%  Similarity=0.128  Sum_probs=48.9

Q ss_pred             CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEEEEeeeCCCCeEEEeE
Q psy5514          30 GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGY  109 (124)
Q Consensus        30 ~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~V~~~D~~gR~~~~GY  109 (124)
                      ..+-||+-  .+.-+..     ....+.|.+..   ...+.+||-.|.+++....+.+ -.|.++||..|..+++...|-
T Consensus        35 ~~dpyv~v--~l~~~~~-----~~~~~kT~v~~---~t~~P~wne~f~f~i~~~~l~~-~~l~i~v~d~~~~~~~~~iG~  103 (123)
T cd08521          35 RSNPYVKV--YLLPDKS-----KQSKRKTSVKK---NTTNPVFNETLKYHISKSQLET-RTLQLSVWHHDRFGRNTFLGE  103 (123)
T ss_pred             CCCcEEEE--EEecCCC-----cCceeeccccC---CCCCCcccceEEEeCCHHHhCC-CEEEEEEEeCCCCcCCceeeE
Confidence            35678988  6642221     12345555532   2223789988888765544333 469999999999999998887


Q ss_pred             eEEEeCC
Q psy5514         110 GLCHLPI  116 (124)
Q Consensus       110 G~~~lP~  116 (124)
                      ..+.|..
T Consensus       104 ~~i~l~~  110 (123)
T cd08521         104 VEIPLDS  110 (123)
T ss_pred             EEEeccc
Confidence            7766543

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=87.40  E-value=7.6  Score=26.90  Aligned_cols=77  Identities=9%  Similarity=0.036  Sum_probs=48.7

Q ss_pred             eeeeecCCCCCCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEEEEeee
Q psy5514          20 QLFKIGHTEVGTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCVYGLD   99 (124)
Q Consensus        20 eIv~a~~F~~~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~V~~~D   99 (124)
                      +-+...+.....+-||+-  .+.         |.....|.+..   +..+..||-.|.+.....     -.|.++||..|
T Consensus        10 ~~L~~~~~~~~~dpyv~v--~~~---------~~~~~kT~v~~---~t~nP~Wne~f~~~~~~~-----~~l~i~V~d~~   70 (123)
T cd08382          10 DGLAKRDLFRLPDPFAVI--TVD---------GGQTHSTDVAK---KTLDPKWNEHFDLTVGPS-----SIITIQVFDQK   70 (123)
T ss_pred             cCCCccCCCCCCCcEEEE--EEC---------CccceEccEEc---CCCCCcccceEEEEeCCC-----CEEEEEEEECC
Confidence            333333333335678888  642         23334555432   222378998888887431     37999999999


Q ss_pred             CCCC--eEEEeEeEEEeC
Q psy5514         100 GFGN--DVIRGYGLCHLP  115 (124)
Q Consensus       100 ~~gR--~~~~GYG~~~lP  115 (124)
                      ..++  +...|...+.+-
T Consensus        71 ~~~~~~d~~lG~~~i~l~   88 (123)
T cd08382          71 KFKKKDQGFLGCVRIRAN   88 (123)
T ss_pred             CCCCCCCceEeEEEEEHH
Confidence            9887  478888887654

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=87.22  E-value=5.2  Score=24.82  Aligned_cols=70  Identities=23%  Similarity=0.255  Sum_probs=46.7

Q ss_pred             CceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEEEEeeeCCCCeEEEeEe
Q psy5514          31 TLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYG  110 (124)
Q Consensus        31 ~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~V~~~D~~gR~~~~GYG  110 (124)
                      .+.||+.  .+....       .....|-+...   ..+..||..|++......   -..|.|+||..+..++....|-.
T Consensus        21 ~~~yv~v--~~~~~~-------~~~~~T~~~~~---~~~P~w~e~~~~~~~~~~---~~~l~i~v~~~~~~~~~~~~G~~   85 (101)
T smart00239       21 SDPYVKV--SLDGDP-------KEKKKTKVVKN---TLNPVWNETFEFEVPPPE---LAELEIEVYDKDRFGRDDFIGQV   85 (101)
T ss_pred             CCceEEE--EEeCCc-------cceEeeeEecC---CCCCcccceEEEEecCcc---cCEEEEEEEecCCccCCceeEEE
Confidence            6789998  665322       23344444321   123788887777654443   68999999999998888888877


Q ss_pred             EEEeC
Q psy5514         111 LCHLP  115 (124)
Q Consensus       111 ~~~lP  115 (124)
                      .+.+-
T Consensus        86 ~~~l~   90 (101)
T smart00239       86 TIPLS   90 (101)
T ss_pred             EEEHH
Confidence            76643

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=86.58  E-value=9.7  Score=27.24  Aligned_cols=77  Identities=14%  Similarity=0.181  Sum_probs=49.2

Q ss_pred             eeeecCCC-----CCCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEEE
Q psy5514          21 LFKIGHTE-----VGTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCV   95 (124)
Q Consensus        21 Iv~a~~F~-----~~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~V   95 (124)
                      |++|.+.+     ...+-||+-  .+  +        .....|.+..   +..+..||.-|++....  +.. ..|.++|
T Consensus        21 Vi~A~~L~~~d~~g~~DPYv~v--~~--~--------~~~~kT~vi~---~t~nP~Wne~f~f~v~~--~~~-~~l~i~V   82 (136)
T cd08375          21 IVEGRDLKPCNSNGKSDPYCEV--SM--G--------SQEHKTKVVS---DTLNPKWNSSMQFFVKD--LEQ-DVLCITV   82 (136)
T ss_pred             EEEeeCCCCCCCCCCcCcEEEE--EE--C--------CEeeeccccC---CCCCCccCceEEEEecC--ccC-CEEEEEE
Confidence            44555443     335568887  54  2        2234444432   22237899877776532  221 4799999


Q ss_pred             EeeeCCCCeEEEeEeEEEeC
Q psy5514          96 YGLDGFGNDVIRGYGLCHLP  115 (124)
Q Consensus        96 ~~~D~~gR~~~~GYG~~~lP  115 (124)
                      |..|..+++.+.|...+.|.
T Consensus        83 ~D~d~~~~d~~lG~~~i~l~  102 (136)
T cd08375          83 FDRDFFSPDDFLGRTEIRVA  102 (136)
T ss_pred             EECCCCCCCCeeEEEEEEHH
Confidence            99999999999998887764

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=84.64  E-value=10  Score=25.89  Aligned_cols=68  Identities=16%  Similarity=0.158  Sum_probs=45.4

Q ss_pred             CceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEEEEeeeCCCCeEEEeEe
Q psy5514          31 TLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYG  110 (124)
Q Consensus        31 ~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~V~~~D~~gR~~~~GYG  110 (124)
                      .+-||+-  .+.         +.....|.+..   ...+.+||..|.+...  ++.  -.|.|+||..|..+++...|..
T Consensus        21 ~Dpyv~v--~~~---------~~~~~kT~~~~---~t~nP~Wne~f~f~v~--~~~--~~l~~~v~D~d~~~~~~~iG~~   82 (121)
T cd04042          21 SDPYVKF--KYG---------GKTVYKSKTIY---KNLNPVWDEKFTLPIE--DVT--QPLYIKVFDYDRGLTDDFMGSA   82 (121)
T ss_pred             CCCeEEE--EEC---------CEEEEEeeecc---CCCCCccceeEEEEec--CCC--CeEEEEEEeCCCCCCCcceEEE
Confidence            5568887  542         22334444432   2223789988777653  232  4799999999999999999988


Q ss_pred             EEEeCC
Q psy5514         111 LCHLPI  116 (124)
Q Consensus       111 ~~~lP~  116 (124)
                      .+.|..
T Consensus        83 ~~~l~~   88 (121)
T cd04042          83 FVDLST   88 (121)
T ss_pred             EEEHHH
Confidence            877644

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=84.37  E-value=11  Score=25.99  Aligned_cols=69  Identities=19%  Similarity=0.120  Sum_probs=46.7

Q ss_pred             CceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeC---CCCCCCeEEEEEEeeeCCCCeEEE
Q psy5514          31 TLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSN---NPHGWPQLILCVYGLDGFGNDVIR  107 (124)
Q Consensus        31 ~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~---~~~gWP~L~l~V~~~D~~gR~~~~  107 (124)
                      .+-||+-  .+.          .....|.+...   ..+-+||--|.+++...   .+. =..|.|+||..|..+++...
T Consensus        20 ~dpYv~v--~l~----------~~~~kT~v~~~---t~nP~Wne~f~F~v~~~~~~~~~-~~~l~~~v~d~~~~~~d~~i   83 (126)
T cd08682          20 NDAYVII--QLG----------KEKYSTSVKEK---TTSPVWKEECSFELPGLLSGNGN-RATLQLTVMHRNLLGLDKFL   83 (126)
T ss_pred             CCceEEE--EEC----------CeeeeeeeecC---CCCCEeCceEEEEecCcccCCCc-CCEEEEEEEEccccCCCcee
Confidence            5678888  652          23445655442   12379999887776542   122 25799999999999999999


Q ss_pred             eEeEEEeC
Q psy5514         108 GYGLCHLP  115 (124)
Q Consensus       108 GYG~~~lP  115 (124)
                      |...+.|-
T Consensus        84 G~~~i~l~   91 (126)
T cd08682          84 GQVSIPLN   91 (126)
T ss_pred             EEEEEEHH
Confidence            88877653

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=83.90  E-value=10  Score=25.31  Aligned_cols=88  Identities=14%  Similarity=0.083  Sum_probs=53.1

Q ss_pred             EEEE-eeeeeecCCCCCCceEEEeeeeeecCC-CCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEe---CCCCCCC
Q psy5514          15 QLHI-TQLFKIGHTEVGTLGVCRYLGCLGVSR-YLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKS---NNPHGWP   89 (124)
Q Consensus        15 ~l~i-GeIv~a~~F~~~~~L~c~y~~~~~~g~-~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s---~~~~gWP   89 (124)
                      ++.| +.-+...++....+-||+-  .+.-.. .|.     ....|.+..   +..+-+|| .|++....   ..+.  -
T Consensus         4 ~~~i~a~~L~~~d~~~~~DPyv~v--~~~~~~~~~~-----~~~kT~vi~---~t~nP~Wn-~f~~~~~~l~~~~~~--~   70 (110)
T cd04047           4 ELQFSGKKLDKKDFFGKSDPFLEI--SRQSEDGTWV-----LVYRTEVIK---NTLNPVWK-PFTIPLQKLCNGDYD--R   70 (110)
T ss_pred             EEEEEeCCCCCCCCCCCCCeeEEE--EEECCCCCEE-----EEEeeeEec---cCCCCceE-EEEEEHHHhcCCCcC--C
Confidence            3445 5555555544446678888  654322 232     223444433   22238999 66665421   1112  5


Q ss_pred             eEEEEEEeeeCCCCeEEEeEeEEEeC
Q psy5514          90 QLILCVYGLDGFGNDVIRGYGLCHLP  115 (124)
Q Consensus        90 ~L~l~V~~~D~~gR~~~~GYG~~~lP  115 (124)
                      .|.++||..|..|++...|...+.+.
T Consensus        71 ~l~~~V~d~d~~~~d~~iG~~~~~l~   96 (110)
T cd04047          71 PIKIEVYDYDSSGKHDLIGEFETTLD   96 (110)
T ss_pred             EEEEEEEEeCCCCCCcEEEEEEEEHH
Confidence            89999999999999999998877664

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=83.89  E-value=11  Score=25.37  Aligned_cols=79  Identities=20%  Similarity=0.193  Sum_probs=50.7

Q ss_pred             eeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEEE
Q psy5514          21 LFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCV   95 (124)
Q Consensus        21 Iv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~V   95 (124)
                      |++|.+.+.     ..+-||+-  .+.         +...+.|.+..   +..+..||..|+++.....-   -.|.|+|
T Consensus         5 vi~a~~L~~~~~~~~~dpyv~v--~~~---------~~~~~~T~v~~---~~~~P~Wne~f~~~~~~~~~---~~l~~~v   67 (115)
T cd04040           5 VISAENLPSADRNGKSDPFVKF--YLN---------GEKVFKTKTIK---KTLNPVWNESFEVPVPSRVR---AVLKVEV   67 (115)
T ss_pred             EEeeeCCCCCCCCCCCCCeEEE--EEC---------CCcceeeceec---CCCCCcccccEEEEeccCCC---CEEEEEE
Confidence            555655543     24567887  552         12334554432   22238999988888754311   3689999


Q ss_pred             EeeeCCCCeEEEeEeEEEeCC
Q psy5514          96 YGLDGFGNDVIRGYGLCHLPI  116 (124)
Q Consensus        96 ~~~D~~gR~~~~GYG~~~lP~  116 (124)
                      |..|..+++...|...+.+..
T Consensus        68 ~d~~~~~~~~~iG~~~~~l~~   88 (115)
T cd04040          68 YDWDRGGKDDLLGSAYIDLSD   88 (115)
T ss_pred             EeCCCCCCCCceEEEEEEHHH
Confidence            999999999999988777543

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=83.67  E-value=12  Score=25.98  Aligned_cols=43  Identities=21%  Similarity=0.165  Sum_probs=33.2

Q ss_pred             eEEecceEEEEEeCCCCCCCeEEEEEEeeeCCCCeEEEeEeEEEeC
Q psy5514          70 FVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYGLCHLP  115 (124)
Q Consensus        70 ~~w~~P~di~f~s~~~~gWP~L~l~V~~~D~~gR~~~~GYG~~~lP  115 (124)
                      ..||..|++......   =..|.|+||..|..++++..|...+.|-
T Consensus        47 P~Wne~f~f~~~~~~---~~~L~~~V~d~d~~~~dd~iG~~~i~l~   89 (124)
T cd04037          47 PVFGKMFELEATLPG---NSILKISVMDYDLLGSDDLIGETVIDLE   89 (124)
T ss_pred             CccceEEEEEecCCC---CCEEEEEEEECCCCCCCceeEEEEEeec
Confidence            789888877654321   1579999999999999999888777664

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=83.44  E-value=14  Score=26.54  Aligned_cols=81  Identities=21%  Similarity=0.306  Sum_probs=57.1

Q ss_pred             eeeeecCCCCCCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEEEEee-
Q psy5514          20 QLFKIGHTEVGTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCVYGL-   98 (124)
Q Consensus        20 eIv~a~~F~~~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~V~~~-   98 (124)
                      .|.+|.++....+-||+.  .+.-..+     ...-+.|-+...+   -+.+||-=|++....  ..   .|.+.||.. 
T Consensus         4 ~V~~A~~L~~~sDPYV~l--~v~~~~~-----~~~~~KTk~i~~T---lnPvWnE~F~i~l~~--s~---~L~~~v~d~~   68 (118)
T cd08686           4 IVHSAQGFKQSANLYCTL--EVDSFGY-----FVKKAKTRVCRDT---TEPNWNEEFEIELEG--SQ---TLRILCYEKC   68 (118)
T ss_pred             EEEeCCCCCCCCCCEEEE--EEcCccc-----cceeeeeeeecCC---CCCccceEEEEEeCC--CC---EEEEEEEEcc
Confidence            478899999888999999  6654211     0133566665422   227888877777653  22   788999986 


Q ss_pred             ------eCCCCeEEEeEeEEEeC
Q psy5514          99 ------DGFGNDVIRGYGLCHLP  115 (124)
Q Consensus        99 ------D~~gR~~~~GYG~~~lP  115 (124)
                            |..+.+++.|=|.+.|-
T Consensus        69 ~~~~~~d~~~~d~~~G~g~i~Ld   91 (118)
T cd08686          69 YSKVKLDGEGTDAIMGKGQIQLD   91 (118)
T ss_pred             cccccccccCcccEEEEEEEEEC
Confidence                  67789999999998883

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=83.21  E-value=12  Score=26.38  Aligned_cols=79  Identities=10%  Similarity=0.082  Sum_probs=47.7

Q ss_pred             eeeeeecCCCCCCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEe-CC----CC-CCCeEE
Q psy5514          19 TQLFKIGHTEVGTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKS-NN----PH-GWPQLI   92 (124)
Q Consensus        19 GeIv~a~~F~~~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s-~~----~~-gWP~L~   92 (124)
                      +.-+...++....+-||+-  .+.          .....|-+..   +..+-.||--|.+.... .+    .. .=|.|.
T Consensus        10 a~~L~~~d~~g~~dpyv~v--~~~----------~~~~kT~v~~---~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~   74 (135)
T cd04017          10 ARDLLAADKSGLSDPFARV--SFL----------NQSQETEVIK---ETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVV   74 (135)
T ss_pred             eecCcCCCCCCCCCCEEEE--EEC----------CeeeEeeeEc---CCCCCccCcEEEEeeeeccCChHHhhcCCCEEE
Confidence            5555555554446678887  552          1233444432   22237888776665321 11    11 126799


Q ss_pred             EEEEeeeCCCCeEEEeEeEE
Q psy5514          93 LCVYGLDGFGNDVIRGYGLC  112 (124)
Q Consensus        93 l~V~~~D~~gR~~~~GYG~~  112 (124)
                      ++||..|..++++..|-..+
T Consensus        75 v~V~d~d~~~~d~~iG~~~i   94 (135)
T cd04017          75 VELFDQDSVGKDEFLGRSVA   94 (135)
T ss_pred             EEEEeCcCCCCCccceEEEe
Confidence            99999999999999998875

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=82.41  E-value=14  Score=26.33  Aligned_cols=71  Identities=14%  Similarity=0.150  Sum_probs=44.0

Q ss_pred             CceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEEEEeeeCCCCeEEEeEe
Q psy5514          31 TLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYG  110 (124)
Q Consensus        31 ~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~V~~~D~~gR~~~~GYG  110 (124)
                      .+.|||-  .+..+.  +.   ...-.|.+-.   ...+.+||-.|.+......+.. =.|.|+||..|..+++...|--
T Consensus        35 ~d~yVkv--~l~~~~--~~---~~~~kT~v~~---~~~nP~fnE~F~f~i~~~~l~~-~~L~~~V~~~~~~~~~~~lG~v  103 (137)
T cd08409          35 TSVYVKV--SLMIHN--KV---VKTKKTEVVD---GAASPSFNESFSFKVTSRQLDT-ASLSLSVMQSGGVRKSKLLGRV  103 (137)
T ss_pred             CCeEEEE--EEEECC--EE---eeeeecccEe---CCCCCcccceEEEECCHHHhCc-cEEEEEEEeCCCCCCcceEEEE
Confidence            6789998  665432  21   1122333321   2233789988888764433322 4699999999999999887654


Q ss_pred             EE
Q psy5514         111 LC  112 (124)
Q Consensus       111 ~~  112 (124)
                      .+
T Consensus       104 ~i  105 (137)
T cd08409         104 VL  105 (137)
T ss_pred             EE
Confidence            43

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=82.24  E-value=11  Score=25.66  Aligned_cols=84  Identities=14%  Similarity=0.035  Sum_probs=49.1

Q ss_pred             eeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEe-CCCCCCCeEEEE
Q psy5514          21 LFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKS-NNPHGWPQLILC   94 (124)
Q Consensus        21 Iv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s-~~~~gWP~L~l~   94 (124)
                      |++|.+-+.     ..+-||+-  .+.-+...     .....|.+..   +..+-+||--|++.... ..+ .=-.|.|+
T Consensus        22 vi~a~~L~~~~~~~~~dpyv~v--~l~~~~~~-----~~~~kT~v~~---~t~nP~wne~f~f~~~~~~~l-~~~~l~~~   90 (125)
T cd04031          22 VLQARDLPPRDDGSLRNPYVKV--YLLPDRSE-----KSKRRTKTVK---KTLNPEWNQTFEYSNVRRETL-KERTLEVT   90 (125)
T ss_pred             EEEecCCCCcCCCCCCCCEEEE--EEccCCCc-----cccccccccC---CCCCCccccEEEEcccCHHHh-CCCEEEEE
Confidence            556655432     24568887  55322121     1222344332   22337898877776433 111 12479999


Q ss_pred             EEeeeCCCCeEEEeEeEEEeC
Q psy5514          95 VYGLDGFGNDVIRGYGLCHLP  115 (124)
Q Consensus        95 V~~~D~~gR~~~~GYG~~~lP  115 (124)
                      ||..|..+++.+.|...+.|-
T Consensus        91 V~d~~~~~~~~~iG~~~i~l~  111 (125)
T cd04031          91 VWDYDRDGENDFLGEVVIDLA  111 (125)
T ss_pred             EEeCCCCCCCcEeeEEEEecc
Confidence            999999999998887766654

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=81.68  E-value=12  Score=26.26  Aligned_cols=45  Identities=16%  Similarity=0.090  Sum_probs=33.4

Q ss_pred             eEEecceEEEEEeCCCCCCCeEEEEEEeeeCCCCeEEEeEeEEEeC
Q psy5514          70 FVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYGLCHLP  115 (124)
Q Consensus        70 ~~w~~P~di~f~s~~~~gWP~L~l~V~~~D~~gR~~~~GYG~~~lP  115 (124)
                      -.||..|.++.....+.. =.|.++||..|..+++.+.|...+.+-
T Consensus        65 P~wne~f~f~i~~~~l~~-~~l~~~v~d~~~~~~~~~iG~~~i~~~  109 (136)
T cd08402          65 PYYNESFSFEVPFEQIQK-VHLIVTVLDYDRIGKNDPIGKVVLGCN  109 (136)
T ss_pred             CcccceEEEECCHHHhCC-CEEEEEEEeCCCCCCCceeEEEEECCc
Confidence            789988888764433221 258999999999999999998666553

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=81.67  E-value=15  Score=25.67  Aligned_cols=92  Identities=13%  Similarity=0.047  Sum_probs=53.1

Q ss_pred             CceeEEEEeeeeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCC
Q psy5514          11 GSCKQLHITQLFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNP   85 (124)
Q Consensus        11 ~~~~~l~iGeIv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~   85 (124)
                      ....+|.+ .|++|.+.+.     ..+-||+-  .+..+...     .....|.+..   ..-+..|+--|.+++.....
T Consensus        12 ~~~~~L~V-~vi~a~~L~~~d~~g~~Dpyv~v--~l~~~~~~-----~~~~kT~v~k---~t~nP~w~e~F~f~v~~~~~   80 (136)
T cd08404          12 PTTNRLTV-VVLKARHLPKMDVSGLADPYVKV--NLYYGKKR-----ISKKKTHVKK---CTLNPVFNESFVFDIPSEEL   80 (136)
T ss_pred             CCCCeEEE-EEEEeeCCCccccCCCCCeEEEE--EEEcCCce-----eeeEcCcccc---CCCCCccCceEEEECCHHHh
Confidence            33444444 4666666543     24679998  76443221     1122232221   11226788877776544333


Q ss_pred             CCCCeEEEEEEeeeCCCCeEEEeEeEEEe
Q psy5514          86 HGWPQLILCVYGLDGFGNDVIRGYGLCHL  114 (124)
Q Consensus        86 ~gWP~L~l~V~~~D~~gR~~~~GYG~~~l  114 (124)
                      .. =.|.|+||..|..+++...|...+.+
T Consensus        81 ~~-~~l~~~v~d~d~~~~~~~iG~~~~~~  108 (136)
T cd08404          81 ED-ISVEFLVLDSDRVTKNEVIGRLVLGP  108 (136)
T ss_pred             CC-CEEEEEEEECCCCCCCccEEEEEECC
Confidence            10 13678999999999999999877654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=80.53  E-value=16  Score=25.03  Aligned_cols=99  Identities=15%  Similarity=0.132  Sum_probs=57.4

Q ss_pred             eeEEeecCceeEEEEeeeeeecCC-----CCCCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEE
Q psy5514           4 QYTVNVYGSCKQLHITQLFKIGHT-----EVGTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEI   78 (124)
Q Consensus         4 ~~~~~~~~~~~~l~iGeIv~a~~F-----~~~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di   78 (124)
                      |.++...+.-..|.| .|++|.+-     ....+-||+-  .+..+.       ...+.|.+-..   ..+.+||--|.+
T Consensus         6 ~~sl~y~~~~~~L~V-~v~~a~~L~~~d~~g~~dpyv~v--~l~~~~-------~~~~kT~v~~~---t~~P~wne~f~f   72 (124)
T cd08387           6 HFSLEYDKDMGILNV-KLIQARNLQPRDFSGTADPYCKV--RLLPDR-------SNTKQSKIHKK---TLNPEFDESFVF   72 (124)
T ss_pred             EEEEEECCCCCEEEE-EEEEeeCCCCCCCCCCCCCeEEE--EEecCC-------CCcEeCceEcC---CCCCCcccEEEE
Confidence            344555554444443 24444444     3335678988  663221       22345555432   122678877777


Q ss_pred             EEEeCCCCCCCeEEEEEEeeeCCCCeEEEeEeEEEeCC
Q psy5514          79 VFKSNNPHGWPQLILCVYGLDGFGNDVIRGYGLCHLPI  116 (124)
Q Consensus        79 ~f~s~~~~gWP~L~l~V~~~D~~gR~~~~GYG~~~lP~  116 (124)
                      ......+.. -.|.++||..|..+++...|.-.+.|-.
T Consensus        73 ~v~~~~l~~-~~l~i~V~d~~~~~~~~~iG~~~i~l~~  109 (124)
T cd08387          73 EVPPQELPK-RTLEVLLYDFDQFSRDECIGVVELPLAE  109 (124)
T ss_pred             eCCHHHhCC-CEEEEEEEECCCCCCCceeEEEEEeccc
Confidence            654433311 3689999999999999998877766543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=80.08  E-value=15  Score=24.65  Aligned_cols=43  Identities=16%  Similarity=0.130  Sum_probs=33.1

Q ss_pred             eEEecceEEEEEeCCCCCCCeEEEEEEeeeCCCCeEEEeEeEEEeC
Q psy5514          70 FVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYGLCHLP  115 (124)
Q Consensus        70 ~~w~~P~di~f~s~~~~gWP~L~l~V~~~D~~gR~~~~GYG~~~lP  115 (124)
                      ..||.=|+++......   -.|.++||..|..+++...|...+.|.
T Consensus        45 P~Wne~f~f~~~~~~~---~~l~v~v~d~~~~~~~~~iG~~~~~l~   87 (116)
T cd08376          45 PQWLEQFDLHLFDDQS---QILEIEVWDKDTGKKDEFIGRCEIDLS   87 (116)
T ss_pred             CceeEEEEEEecCCCC---CEEEEEEEECCCCCCCCeEEEEEEeHH
Confidence            7899877766543211   368999999999999999999888763

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	124
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	94.4
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	93.14
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	93.07
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	93.05
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	92.96
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	91.62
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	91.61
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	91.56
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	91.27
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	90.88
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	90.75
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	90.64
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	90.64
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	90.55
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	90.32
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	90.31
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	90.27
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	89.38
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	87.72
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	87.08
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	86.89
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	86.42
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	86.13
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	84.34
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	84.23
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	84.14
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	83.57
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	82.64
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	80.8
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	80.14

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.40  E-value=0.42  Score=32.22  Aligned_cols=81  Identities=12%  Similarity=0.062  Sum_probs=53.5

Q ss_pred             eeeeecCCC----CCCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEEE
Q psy5514          20 QLFKIGHTE----VGTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCV   95 (124)
Q Consensus        20 eIv~a~~F~----~~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~V   95 (124)
                      .|++|.+.+    ...+-||+-  .+.         + ....|.+..   +..+-+||.-|++.........--.|.|+|
T Consensus        12 ~v~~a~~L~~~~~g~~dpyv~v--~~~---------~-~~~kT~v~~---~t~nP~wne~f~f~v~~~~~~~~~~l~i~V   76 (140)
T 2dmh_A           12 IVESASNIPKTKFGKPDPIVSV--IFK---------D-EKKKTKKVD---NELNPVWNEILEFDLRGIPLDFSSSLGIIV   76 (140)
T ss_dssp             EEEEEESCCCCSSSCCCEEEEE--ECS---------S-CEEECCCCC---SCSSCEEEEEEEEECSSCCCCTTCEEEEEE
T ss_pred             EEEEeeCCCCCCCCCCCeEEEE--EEC---------C-EeEEeeeec---CCCCCccCcEEEEEecccccCCCCEEEEEE
Confidence            344554444    346789998  654         1 234444422   222389998887776544444557899999


Q ss_pred             EeeeCCCCeEEEeEeEEEeC
Q psy5514          96 YGLDGFGNDVIRGYGLCHLP  115 (124)
Q Consensus        96 ~~~D~~gR~~~~GYG~~~lP  115 (124)
                      |..|..+++...|-..+.|-
T Consensus        77 ~d~d~~~~~~~lG~~~i~l~   96 (140)
T 2dmh_A           77 KDFETIGQNKLIGTATVALK   96 (140)
T ss_dssp             EETTCSSSCCCCEEEEEEGG
T ss_pred             EECCCCCCCceEEEEEEEHH
Confidence            99999999999888777664

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=93.14  E-value=1.4  Score=30.12  Aligned_cols=83  Identities=10%  Similarity=-0.024  Sum_probs=52.6

Q ss_pred             eeeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEE
Q psy5514          20 QLFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILC   94 (124)
Q Consensus        20 eIv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~   94 (124)
                      .|++|.+.+.     ..+-||+-  .+.-...+     .....|.+..   ...+-+||--|++........  ..|.|+
T Consensus        36 ~v~~a~~L~~~d~~g~~dpyv~v--~~~~~~~~-----~~~~kT~v~~---~t~nP~wne~f~f~v~~~~~~--~~L~i~  103 (149)
T 1a25_A           36 VVRDAKNLVPMDPNGLSDPYVKL--KLIPDPKS-----ESKQKTKTIK---CSLNPEWNETFRFQLKESDKD--RRLSVE  103 (149)
T ss_dssp             EEEEEESCCCCSTTSCCCEEEEE--EEESCTTC-----SSCEECCCCS---SCSSCEEEEEEEEECCSGGGG--CEEEEE
T ss_pred             EEEEeeCCCCCCCCCCcCeEEEE--EEECCCCC-----cceEecceeC---CCCCCcCCcEEEEEeccccCC--CEEEEE
Confidence            4566666543     35789998  76543221     2233444432   222379998777765432222  479999


Q ss_pred             EEeeeCCCCeEEEeEeEEEe
Q psy5514          95 VYGLDGFGNDVIRGYGLCHL  114 (124)
Q Consensus        95 V~~~D~~gR~~~~GYG~~~l  114 (124)
                      ||..|..+++...|-..+.|
T Consensus       104 V~d~d~~~~~~~iG~~~i~l  123 (149)
T 1a25_A          104 IWDWDLTSRNDFMGSLSFGI  123 (149)
T ss_dssp             EEECCSSSCCEEEEEEEEEH
T ss_pred             EEECCCCCCCCEEEEEEEEH
Confidence            99999999999988776655

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=93.07  E-value=1.3  Score=29.78  Aligned_cols=65  Identities=9%  Similarity=0.019  Sum_probs=44.9

Q ss_pred             CceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEEEEeeeCCCCeEEEeEe
Q psy5514          31 TLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYG  110 (124)
Q Consensus        31 ~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~V~~~D~~gR~~~~GYG  110 (124)
                      .+-||+-  .+.         +...+.|.+-.   ...+-+||--|++.....     -.|.|+||..|..+++...|-.
T Consensus        38 ~DPyv~v--~l~---------~~~~~~T~~~~---~t~nP~WnE~f~f~v~~~-----~~L~~~V~d~d~~~~dd~iG~~   98 (136)
T 1gmi_A           38 LDPYIAL--NVD---------DSRIGQTATKQ---KTNSPAWHDEFVTDVCNG-----RKIELAVFHDAPIGYDDFVANC   98 (136)
T ss_dssp             CCEEEEE--EET---------TEEEEECCCCS---SCSSCEEEEEEEEEEEEE-----CEEEEEEEECCSSSSCEEEEEE
T ss_pred             cCcEEEE--EEC---------CeEeeeeeEEC---CCcCCccCCEEEEEecCC-----CEEEEEEEeCCCCCCCCEEEEE
Confidence            5679988  652         22334443322   222379998888876543     6899999999999999999877


Q ss_pred             EEEe
Q psy5514         111 LCHL  114 (124)
Q Consensus       111 ~~~l  114 (124)
                      .+.|
T Consensus        99 ~i~l  102 (136)
T 1gmi_A           99 TIQF  102 (136)
T ss_dssp             EEEH
T ss_pred             EEEH
Confidence            7665

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=92.96  E-value=1.5  Score=29.96  Aligned_cols=83  Identities=13%  Similarity=-0.000  Sum_probs=51.7

Q ss_pred             eeeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEE
Q psy5514          20 QLFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILC   94 (124)
Q Consensus        20 eIv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~   94 (124)
                      .|++|.+.+.     ..+-||+-  .+....+ +.   .....|.+..   ...+-+||--|.+.....    =..|.|+
T Consensus        25 ~v~~a~~L~~~d~~g~~dpyv~v--~~~~~~~-~~---~~~~kT~v~~---~t~nP~wne~f~f~v~~~----~~~l~~~   91 (153)
T 3b7y_A           25 RVIAGIGLAKKDILGASDPYVRV--TLYDPMN-GV---LTSVQTKTIK---KSLNPKWNEEILFRVHPQ----QHRLLFE   91 (153)
T ss_dssp             EEEEEESCC-------CCEEEEE--EEEETTT-EE---EEEEECCCCS---SCSSCCCCEEEEEEECTT----TCEEEEE
T ss_pred             EEEEeeCCCCCCCCCCCCcEEEE--EEECCCC-cc---ceeeeCcccc---CCCCCCCCCEEEEEecCC----CCEEEEE
Confidence            4556665553     35679998  7764322 00   1233333332   222378888777665432    2689999


Q ss_pred             EEeeeCCCCeEEEeEeEEEeC
Q psy5514          95 VYGLDGFGNDVIRGYGLCHLP  115 (124)
Q Consensus        95 V~~~D~~gR~~~~GYG~~~lP  115 (124)
                      ||..|..+++...|-..+.|-
T Consensus        92 V~d~d~~~~d~~iG~~~i~l~  112 (153)
T 3b7y_A           92 VFDENRLTRDDFLGQVDVPLY  112 (153)
T ss_dssp             EEECCSSSCCEEEEEEEEECC
T ss_pred             EEECCCCcCCCeeEEEEEEHH
Confidence            999999999999988777764

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=91.62  E-value=2.2  Score=29.06  Aligned_cols=84  Identities=12%  Similarity=0.022  Sum_probs=50.2

Q ss_pred             eeeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEE
Q psy5514          20 QLFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILC   94 (124)
Q Consensus        20 eIv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~   94 (124)
                      .|++|.+.+.     ..+-||+-  .+.-+...     .....|.+..   ...+-+||-.|.+......+.. ..|.|+
T Consensus        35 ~v~~a~~L~~~d~~g~~dpyv~v--~~~~~~~~-----~~~~kT~v~~---~t~nP~wne~f~f~v~~~~l~~-~~l~v~  103 (153)
T 1w15_A           35 VVLKARHLPKSDVSGLSDPYVKV--NLYHAKKR-----ISKKKTHVKK---CTPNAVFNELFVFDIPCESLEE-ISVEFL  103 (153)
T ss_dssp             EEEEEESCC------CCCEEEEE--EEEETTEE-----EEEEECCCCC---SCSSEEEEEEEEEECCSSSSTT-EEEEEE
T ss_pred             EEEEeECCCCcCCCCCCCeEEEE--EEEeCCeE-----eceEecCccc---CCCCCeecceEEEECCHHHhCc-eEEEEE
Confidence            3566666553     24789998  66432111     0122333322   2223899987777654433322 579999


Q ss_pred             EEeeeCCCCeEEEeEeEEEe
Q psy5514          95 VYGLDGFGNDVIRGYGLCHL  114 (124)
Q Consensus        95 V~~~D~~gR~~~~GYG~~~l  114 (124)
                      ||..|..+++...|-..+.|
T Consensus       104 V~d~d~~~~~~~lG~~~i~l  123 (153)
T 1w15_A          104 VLDSERGSRNEVIGRLVLGA  123 (153)
T ss_dssp             EEECCTTSCCEEEEEEEEST
T ss_pred             EEeCCCCCCCcEEEEEEECC
Confidence            99999999999887554443

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=91.61  E-value=1  Score=30.13  Aligned_cols=42  Identities=19%  Similarity=0.134  Sum_probs=34.6

Q ss_pred             eEEecceEEEEEeCCCCCCCeEEEEEEeeeCCCCeEEEeEeEEEeC
Q psy5514          70 FVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYGLCHLP  115 (124)
Q Consensus        70 ~~w~~P~di~f~s~~~~gWP~L~l~V~~~D~~gR~~~~GYG~~~lP  115 (124)
                      -+||-.|++....    .-..|.|+||..|..+++...|...+.|.
T Consensus        56 P~Wne~f~f~v~~----~~~~l~~~V~d~~~~~~d~~lG~~~i~l~   97 (136)
T 1wfj_A           56 PEWNETFIFTVSE----GTTELKAKIFDKDVGTEDDAVGEATIPLE   97 (136)
T ss_dssp             CEEEEEEEEEEES----SCCEEEEEECCSSSCTTTCCSEEEEEESH
T ss_pred             CccCcEEEEEECC----CCCEEEEEEEECCCCCCCceEEEEEEEHH
Confidence            8999988888764    33689999999999999999887776653

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=91.56  E-value=1.2  Score=29.80  Aligned_cols=77  Identities=18%  Similarity=0.113  Sum_probs=49.8

Q ss_pred             eeeeecCCC-----CCCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEE
Q psy5514          20 QLFKIGHTE-----VGTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILC   94 (124)
Q Consensus        20 eIv~a~~F~-----~~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~   94 (124)
                      .|++|.+.+     ...+-||+-  .+.  +        ..-.|.+..   ...+-+||-.|.+....  +.  ..|.++
T Consensus        18 ~v~~a~~L~~~d~~g~~dpyv~v--~~~--~--------~~~kT~~~~---~t~nP~wne~f~f~~~~--~~--~~l~i~   78 (133)
T 2ep6_A           18 KVLKAADLLAADFSGKSDPFCLL--ELG--N--------DRLQTHTVY---KNLNPEWNKVFTFPIKD--IH--DVLEVT   78 (133)
T ss_dssp             EEEEEESCCCSSSSSCCCEEEEE--EET--T--------EEEECCCCS---SCSSCCCCEEEEEEESC--TT--CEEEEE
T ss_pred             EEEeeECCCCCCCCCCcCeEEEE--EEC--C--------EEEEeeeec---CCCCCccccEEEEEecC--CC--CEEEEE
Confidence            345555554     335789998  652  1        122343332   22237898777776643  32  579999


Q ss_pred             EEeeeCCCCeEEEeEeEEEeC
Q psy5514          95 VYGLDGFGNDVIRGYGLCHLP  115 (124)
Q Consensus        95 V~~~D~~gR~~~~GYG~~~lP  115 (124)
                      ||..|..+++...|-..+.|-
T Consensus        79 V~d~d~~~~~~~lG~~~i~l~   99 (133)
T 2ep6_A           79 VFDEDGDKPPDFLGKVAIPLL   99 (133)
T ss_dssp             EEEEETTEEEEECCBCEEEGG
T ss_pred             EEECCCCCCCCeeEEEEEEHH
Confidence            999999999999988777664

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=91.27  E-value=1.5  Score=29.52  Aligned_cols=83  Identities=13%  Similarity=0.134  Sum_probs=52.2

Q ss_pred             eeeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEE
Q psy5514          20 QLFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILC   94 (124)
Q Consensus        20 eIv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~   94 (124)
                      .|++|.+.+.     ..+-||+-  .+.-..       .....|.+..   ...+-+||.-|.+......+.. ..|.|+
T Consensus        39 ~v~~a~~L~~~d~~g~~dpyv~v--~l~~~~-------~~~~kT~v~~---~t~nP~wne~f~f~v~~~~l~~-~~L~i~  105 (143)
T 3f04_A           39 GIIQAAELPALDMGGTSDPYVKV--FLLPDK-------KKKFETKVHR---KTLNPVFNEQFTFKVPYSELGG-KTLVMA  105 (143)
T ss_dssp             EEEEEECCCCBGGGBCCCEEEEE--EEESCC-------SCCEECCCCC---SCSSCEEEEEEEECCCHHHHTT-CEEEEE
T ss_pred             EEEEecCCCCCCCCCCcCcEEEE--EEECCC-------CccEECccCc---CCCCCcCcCeEEEeecHhhcCC-CEEEEE
Confidence            4566666653     35679998  763221       1233343322   2223789977766543322222 689999


Q ss_pred             EEeeeCCCCeEEEeEeEEEeC
Q psy5514          95 VYGLDGFGNDVIRGYGLCHLP  115 (124)
Q Consensus        95 V~~~D~~gR~~~~GYG~~~lP  115 (124)
                      ||..|..+++...|-..+.|-
T Consensus       106 V~d~d~~~~~~~iG~~~i~l~  126 (143)
T 3f04_A          106 VYDFDRFSKHDIIGEFKVPMN  126 (143)
T ss_dssp             EEECCSSSCCEEEEEEEEEGG
T ss_pred             EEeCCCCCCCceEEEEEEEHH
Confidence            999999999999988877664

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=90.88  E-value=2.5  Score=28.28  Aligned_cols=84  Identities=10%  Similarity=0.007  Sum_probs=52.6

Q ss_pred             eeeeecCCCC------CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEE-EEeCCCCCCCeEE
Q psy5514          20 QLFKIGHTEV------GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIV-FKSNNPHGWPQLI   92 (124)
Q Consensus        20 eIv~a~~F~~------~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~-f~s~~~~gWP~L~   92 (124)
                      .|++|.+.+.      ..+-||+-  .+.-.       +.....|.+..   ...+-+||.-|.+. .....+. =..|.
T Consensus        27 ~v~~a~~L~~~d~~~~~~dpyv~v--~~~~~-------~~~~~kT~v~~---~t~nP~wne~f~f~~v~~~~~~-~~~l~   93 (138)
T 1ugk_A           27 NIKEARGLPAMDEQSMTSDPYIKM--TILPE-------KKHKVKTRVLR---KTLDPAFDETFTFYGIPYTQIQ-ELALH   93 (138)
T ss_dssp             EEEEEESCCCCBTTTTBCEEEEEE--EEETT-------TCSEEECCCCS---SCSSCEEEEEEEEECCCSTTGG-GCEEE
T ss_pred             EEEEeeCCCCCCCCCCCCCCEEEE--EEecC-------CCceEecCcCc---CCCCCcEeeEEEEcCcCHHHhc-cCEEE
Confidence            4566666543      24679998  66532       11334444432   22237899777664 3322222 25899


Q ss_pred             EEEEeeeCCCCeEEEeEeEEEeCC
Q psy5514          93 LCVYGLDGFGNDVIRGYGLCHLPI  116 (124)
Q Consensus        93 l~V~~~D~~gR~~~~GYG~~~lP~  116 (124)
                      |+||..|..+++...|-..+.|-.
T Consensus        94 i~V~d~d~~~~~~~lG~~~i~l~~  117 (138)
T 1ugk_A           94 FTILSFDRFSRDDIIGEVLIPLSG  117 (138)
T ss_dssp             EEEEEECSSCCCCCCEEEEEECTT
T ss_pred             EEEEECCCCCCCcEEEEEEEehhH
Confidence            999999999999999887777654

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=90.75  E-value=3  Score=28.94  Aligned_cols=85  Identities=13%  Similarity=-0.040  Sum_probs=52.6

Q ss_pred             eeeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEE
Q psy5514          20 QLFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILC   94 (124)
Q Consensus        20 eIv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~   94 (124)
                      .|++|.+.+.     ..+-||+-  .+.-....     .....|.+..   ...+-+||--|.+......+. =..|.|+
T Consensus        42 ~v~~a~~L~~~d~~g~~DPyv~v--~l~~~~~~-----~~~~kT~v~~---~t~nP~wne~f~f~v~~~~l~-~~~L~i~  110 (166)
T 2cm5_A           42 GIIRCVHLAAMDANGYSDPFVKL--WLKPDMGK-----KAKHKTQIKK---KTLNPEFNEEFFYDIKHSDLA-KKSLDIS  110 (166)
T ss_dssp             EEEEEESCCCCSTTSCCCEEEEE--EEETC--------CCEEECCCCC---SCSSCEEEEEEEEECCGGGGG-GCEEEEE
T ss_pred             EEEEeECCCCccCCCCCCcEEEE--EEECCCCc-----cceEeCCccc---CCCCCcccceEEEEcchHhcC-CCEEEEE
Confidence            3566666543     35789998  76543221     1233343332   222379998877765433322 2589999


Q ss_pred             EEeeeCCCCeEEEeEeEEEeC
Q psy5514          95 VYGLDGFGNDVIRGYGLCHLP  115 (124)
Q Consensus        95 V~~~D~~gR~~~~GYG~~~lP  115 (124)
                      ||..|..+++...|-..+.|.
T Consensus       111 V~d~d~~~~~~~iG~~~i~l~  131 (166)
T 2cm5_A          111 VWDYDIGKSNDYIGGCQLGIS  131 (166)
T ss_dssp             EEECCSSSCCEEEEEEEEETT
T ss_pred             EEECCCCCCCcEEEeEEEecc
Confidence            999999999999987666654

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=90.64  E-value=2.6  Score=28.02  Aligned_cols=76  Identities=8%  Similarity=0.010  Sum_probs=46.1

Q ss_pred             eeeeecCCC-----CCCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEE
Q psy5514          20 QLFKIGHTE-----VGTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILC   94 (124)
Q Consensus        20 eIv~a~~F~-----~~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~   94 (124)
                      .|++|.+..     ...+-||+-  .+...        .....|.+..   ...+-+||..|.+......     .|.|+
T Consensus        10 ~v~~a~~L~~~d~~g~sDpyv~v--~~~~~--------~~~~kT~v~~---~t~nP~wne~f~f~v~~~~-----~l~~~   71 (132)
T 3pyc_A           10 TVLCAKNLAKKDFFRLPDPFAKI--VVDGS--------GQCHSTDTVK---NTLDPKWNQHYDLYVGKTD-----SITIS   71 (132)
T ss_dssp             EEEEEESCCCCSTTCCCCEEEEE--EETTT--------CCEEECCCCS---SCSSCEEEEEEEEEEETTC-----CEEEE
T ss_pred             EEEEeECCCCCCCCCCcCeEEEE--EECCC--------CceEECCccC---CCCCCCccCEEEEEeCCCC-----EEEEE
Confidence            455555543     335789998  66221        1223333322   2223799998877665432     39999


Q ss_pred             EEeeeCCCC---eEEEeEeEEE
Q psy5514          95 VYGLDGFGN---DVIRGYGLCH  113 (124)
Q Consensus        95 V~~~D~~gR---~~~~GYG~~~  113 (124)
                      ||..|..++   +...|-..+.
T Consensus        72 v~d~d~~~~~~~d~~lG~~~i~   93 (132)
T 3pyc_A           72 VWNHKKIHKKQGAGFLGCVRLL   93 (132)
T ss_dssp             EEEGGGTTSSTTTTEEEEEEEC
T ss_pred             EEECCCCCCCCCCCceEEEEEe
Confidence            999999987   6777655553

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=90.64  E-value=1.8  Score=29.68  Aligned_cols=85  Identities=12%  Similarity=0.083  Sum_probs=53.4

Q ss_pred             eeeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEE
Q psy5514          20 QLFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILC   94 (124)
Q Consensus        20 eIv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~   94 (124)
                      .|++|.+.+.     ..+-||+-  .+.-..       .....|.+..   ...+-+||--|.+......+. =..|.|+
T Consensus        47 ~v~~a~~L~~~d~~g~~dpyv~v--~~~~~~-------~~~~kT~v~~---~t~nP~wne~f~f~v~~~~l~-~~~L~i~  113 (152)
T 1rsy_A           47 GIIQAAELPALDMGGTSDPYVKV--FLLPDK-------KKKFETKVHR---KTLNPVFNEQFTFKVPYSELG-GKTLVMA  113 (152)
T ss_dssp             EEEEEESCCCCSTTSCCCEEEEE--EEETTC-------CSCEECCCCT---TCSSCEEEEEEEECCCHHHHT-TCEEEEE
T ss_pred             EEEEeECCCCccCCCCcCeEEEE--EEEcCC-------CceEeccccC---CCCCCcCcccEEEeecHHHcC-CCEEEEE
Confidence            4666766653     24789998  765221       1222333322   222389998777654332221 2679999


Q ss_pred             EEeeeCCCCeEEEeEeEEEeCCC
Q psy5514          95 VYGLDGFGNDVIRGYGLCHLPIS  117 (124)
Q Consensus        95 V~~~D~~gR~~~~GYG~~~lP~~  117 (124)
                      ||..|..+++...|-..+.|...
T Consensus       114 V~d~d~~~~~~~iG~~~i~l~~l  136 (152)
T 1rsy_A          114 VYDFDRFSKHDIIGEFKVPMNTV  136 (152)
T ss_dssp             EEECCSSSCCEEEEEEEEEGGGC
T ss_pred             EEECCCCCCCcEEEEEEEEchhc
Confidence            99999999999999887776543

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=90.55  E-value=3  Score=28.64  Aligned_cols=85  Identities=11%  Similarity=0.043  Sum_probs=51.5

Q ss_pred             eeeeecCCC-----CCCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEE
Q psy5514          20 QLFKIGHTE-----VGTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILC   94 (124)
Q Consensus        20 eIv~a~~F~-----~~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~   94 (124)
                      .|++|.+.+     ...+-||+-  .+..+...     .....|.+..   +..+-+||--|.+......+.. ..|.|+
T Consensus        30 ~v~~a~~L~~~d~~g~~dpyv~v--~l~~~~~~-----~~~~kT~v~~---~t~nP~wne~f~f~v~~~~l~~-~~l~i~   98 (159)
T 1tjx_A           30 VILEAKNLKKMDVGGLSDPYVKI--HLMQNGKR-----LKKKKTTIKK---NTLNPYYNESFSFEVPFEQIQK-VQVVVT   98 (159)
T ss_dssp             EEEEEESCCCCSTTSCCCEEEEE--EEEETTEE-----EEEEECCCCC---SCSSCEEEEEEEEECCGGGGGG-CEEEEE
T ss_pred             EEEEeeCCCCccCCCCCCeEEEE--EEEeCCce-----eceeeCceec---CCCCCcccceEEEEcCHHHhCC-cEEEEE
Confidence            355665554     335789998  76542211     1122333221   2223899987777654333221 469999


Q ss_pred             EEeeeCCCCeEEEeEeEEEeC
Q psy5514          95 VYGLDGFGNDVIRGYGLCHLP  115 (124)
Q Consensus        95 V~~~D~~gR~~~~GYG~~~lP  115 (124)
                      ||..|..+++...|-..+.+-
T Consensus        99 V~d~d~~~~~~~iG~~~i~l~  119 (159)
T 1tjx_A           99 VLDYDKIGKNDAIGKVFVGYN  119 (159)
T ss_dssp             EEECCSSSCCEEEEEEEEETT
T ss_pred             EEECCCCCCCceEEEEEECCC
Confidence            999999999999987766654

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=90.32  E-value=1.6  Score=29.31  Aligned_cols=86  Identities=13%  Similarity=0.088  Sum_probs=52.4

Q ss_pred             eeeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEE-EEeCCCCCCCeEEE
Q psy5514          20 QLFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIV-FKSNNPHGWPQLIL   93 (124)
Q Consensus        20 eIv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~-f~s~~~~gWP~L~l   93 (124)
                      .|++|.+.+.     ..+-||+-  .+.-+..+     .....|.+..   ...+-+||--|.+. +....+.. ..|.|
T Consensus        34 ~v~~a~~L~~~d~~g~~dpyv~v--~~~~~~~~-----~~~~kT~v~~---~t~nP~wne~f~f~~~~~~~~~~-~~l~i  102 (142)
T 2chd_A           34 TIIRAKGLKPMDSNGLADPYVKL--HLLPGASK-----SNKLRTKTLR---NTRNPVWNETLQYHGITEEDMQR-KTLRI  102 (142)
T ss_dssp             EEEEEESCCCCCTTSCCCEEEEE--EEESCCSG-----GGEEECCCCC---SCSSCEEEEEEEEESCCHHHHHH-CEEEE
T ss_pred             EEEEecCCCCCCCCCCCCCEEEE--EEEcCCCC-----cceeeCCcCC---CCCCCcCcCEEEEcccCHHHccC-CEEEE
Confidence            3566666553     35789998  77643221     1233343332   22238899876655 32221111 37999


Q ss_pred             EEEeeeCCCCeEEEeEeEEEeCC
Q psy5514          94 CVYGLDGFGNDVIRGYGLCHLPI  116 (124)
Q Consensus        94 ~V~~~D~~gR~~~~GYG~~~lP~  116 (124)
                      +||..|..+++...|-..+.|-.
T Consensus       103 ~V~d~d~~~~d~~iG~~~i~l~~  125 (142)
T 2chd_A          103 SVCDEDKFGHNEFIGETRFSLKK  125 (142)
T ss_dssp             EEEEECTTSCEEEEEEEEEEGGG
T ss_pred             EEEECCCCCCCcEEEEEEEEHHH
Confidence            99999999999999877776643

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=90.31  E-value=1.8  Score=28.49  Aligned_cols=86  Identities=9%  Similarity=-0.030  Sum_probs=47.3

Q ss_pred             eeeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEe-CCCCCCCeEEE
Q psy5514          20 QLFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKS-NNPHGWPQLIL   93 (124)
Q Consensus        20 eIv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s-~~~~gWP~L~l   93 (124)
                      .|++|.+.+.     ..+-||+-  .+.-..     .+.....|.+..   ...+-+||-.|.+.... ..+ .=..|.|
T Consensus        23 ~v~~a~~L~~~d~~~~~dpyv~v--~~~~~~-----~~~~~~kT~v~~---~t~nP~wne~f~f~~~~~~~~-~~~~l~~   91 (129)
T 2bwq_A           23 TILGAKDLPSREDGRPRNPYVKI--YFLPDR-----SDKNKRRTKTVK---KTLEPKWNQTFIYSPVHRREF-RERMLEI   91 (129)
T ss_dssp             EEEEEESCCCCTTSCCBCEEEEE--EEESSC-----SGGGEEECCCCS---SBSSCEEEEEEEECSCCGGGG-GGCEEEE
T ss_pred             EEEEeeCCCCCCCCCCCCCEEEE--EEecCC-----CCCcceeccccc---CCCCCccccEEEEccCCHHHh-cCCeEEE
Confidence            3555655543     24679998  765322     122333444332   22237899877765322 111 1258999


Q ss_pred             EEEeeeCCCC--eEEEeEeEEEeCC
Q psy5514          94 CVYGLDGFGN--DVIRGYGLCHLPI  116 (124)
Q Consensus        94 ~V~~~D~~gR--~~~~GYG~~~lP~  116 (124)
                      +||..|..++  +...|-..+.|..
T Consensus        92 ~V~d~d~~~~~~~~~lG~~~i~l~~  116 (129)
T 2bwq_A           92 TLWDQARVREEESEFLGEILIELET  116 (129)
T ss_dssp             EEEEC-------CEEEEEEEEEGGG
T ss_pred             EEEECCcCcCcCCceeEEEEEEccc
Confidence            9999999997  8888877776654

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=90.27  E-value=2.7  Score=27.73  Aligned_cols=85  Identities=11%  Similarity=0.067  Sum_probs=51.1

Q ss_pred             eeeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEE
Q psy5514          20 QLFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILC   94 (124)
Q Consensus        20 eIv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~   94 (124)
                      .|++|.+.+.     ..+-||+.  .+......     .....|.+..   ...+-+||--|.+......+.. ..|.|+
T Consensus        21 ~v~~a~~L~~~d~~g~~dpyv~v--~~~~~~~~-----~~~~kT~~~~---~t~nP~wne~f~f~v~~~~l~~-~~l~~~   89 (138)
T 3n5a_A           21 NIIKARNLKAMDIGGTSDPYVKV--WLMYKDKR-----VEKKKTVTKK---RNLNPIFNESFAFDIPTEKLRE-TTIIIT   89 (138)
T ss_dssp             EEEEEESCCCCBTTTBCCEEEEE--EEEETTEE-----EEEEECCCCS---SCSSCEEEEEEEEECCGGGGGG-EEEEEE
T ss_pred             EEEEeeCCCCcCCCCCcCeEEEE--EEEeCCCc-----cceEeCcccc---CCCCCcCcceEEEECChhhcCc-eEEEEE
Confidence            4555555543     35789999  77543221     1222332222   2223789977776644333221 569999


Q ss_pred             EEeeeCCCCeEEEeEeEEEeC
Q psy5514          95 VYGLDGFGNDVIRGYGLCHLP  115 (124)
Q Consensus        95 V~~~D~~gR~~~~GYG~~~lP  115 (124)
                      ||..|..+++...|-..+.|-
T Consensus        90 V~d~~~~~~~~~lG~~~i~l~  110 (138)
T 3n5a_A           90 VMDKDKLSRNDVIGKIYLSWK  110 (138)
T ss_dssp             EEECCSSSCCEEEEEEEESSS
T ss_pred             EEECCCCCCCcEEEEEEEccc
Confidence            999999999998887665543

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=89.38  E-value=3.2  Score=28.13  Aligned_cols=84  Identities=8%  Similarity=0.054  Sum_probs=50.8

Q ss_pred             eeeeecCCCC------CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEE
Q psy5514          20 QLFKIGHTEV------GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLIL   93 (124)
Q Consensus        20 eIv~a~~F~~------~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l   93 (124)
                      .|++|.+.+.      ..+-||+-  .+.-...+     .....|.+..   ...+-+||--|.+......+.. -.|.|
T Consensus        28 ~v~~a~~L~~~d~~~~~~dpyv~v--~l~~~~~~-----~~~~kT~v~~---~t~nP~wne~f~f~v~~~~~~~-~~L~~   96 (148)
T 3fdw_A           28 HVKECHQLAYADEAKKRSNPYVKT--YLLPDKSR-----QGKRKTSIKR---DTVNPLYDETLRYEIPESLLAQ-RTLQF   96 (148)
T ss_dssp             EEEEEESCCCSBTTTTBCCEEEEE--EEETCCSG-----GGEEECCCCS---SCSSCEEEEEEEEECCSTTGGG-CEEEE
T ss_pred             EEEEecCCCCcccCCCCCCeEEEE--EEEcCCcc-----cCccccccCC---CCCCCcEeeEEEEEeChhHhCc-eEEEE
Confidence            4556665542      24679998  76532211     1223333322   2223789987776644333221 46999


Q ss_pred             EEEeeeCCCCeEEEeEeEEEe
Q psy5514          94 CVYGLDGFGNDVIRGYGLCHL  114 (124)
Q Consensus        94 ~V~~~D~~gR~~~~GYG~~~l  114 (124)
                      +||..|..+++...|-..+.|
T Consensus        97 ~V~d~d~~~~~~~iG~~~i~l  117 (148)
T 3fdw_A           97 SVWHHGRFGRNTFLGEAEIQM  117 (148)
T ss_dssp             EEEEECGGGCEEEEEEEEEEH
T ss_pred             EEEECCCCcCCcEEEEEEEEc
Confidence            999999999999988766654

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=87.72  E-value=4.7  Score=27.14  Aligned_cols=80  Identities=10%  Similarity=0.041  Sum_probs=51.5

Q ss_pred             eeeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEE
Q psy5514          20 QLFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILC   94 (124)
Q Consensus        20 eIv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~   94 (124)
                      .|++|.+.+.     ..+-||+-  .+  +        .....|.+..   ...+-.||--|.+......    ..|.|+
T Consensus        22 ~v~~a~~L~~~d~~g~~dpyv~v--~~--~--------~~~~kT~~~~---~t~nP~Wne~f~f~v~~~~----~~l~~~   82 (148)
T 3kwu_A           22 TVVCAQGLQAKDKTGSSDPYVTV--QV--G--------KTKKRTKTIY---GNLNPVWEENFHFECHNSS----DRIKVR   82 (148)
T ss_dssp             EEEEEESCCCCSTTSCCCEEEEE--EE--T--------TEEEECCCCC---SCSSCEEEEEEEEEECSTT----CEEEEE
T ss_pred             EEEeeeCCCCCCCCCCcCeEEEE--EE--C--------CEEEECCccC---CCCCCCcccEEEEEecCCC----CEEEEE
Confidence            4556665543     35689998  66  1        1233444332   2223789987666554332    589999


Q ss_pred             EEeeeCC-----------CCeEEEeEeEEEeCCCC
Q psy5514          95 VYGLDGF-----------GNDVIRGYGLCHLPISS  118 (124)
Q Consensus        95 V~~~D~~-----------gR~~~~GYG~~~lP~~p  118 (124)
                      ||..|..           +++...|-..+.|-..+
T Consensus        83 v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~  117 (148)
T 3kwu_A           83 VLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLS  117 (148)
T ss_dssp             EEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGCC
T ss_pred             EEECCCCccccccccccCCCCccEEEEEEEHHHCc
Confidence            9999986           89999988877765543

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=87.08  E-value=1.9  Score=28.71  Aligned_cols=86  Identities=9%  Similarity=-0.030  Sum_probs=52.4

Q ss_pred             eeeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEe-CCCCCCCeEEE
Q psy5514          20 QLFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKS-NNPHGWPQLIL   93 (124)
Q Consensus        20 eIv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s-~~~~gWP~L~l   93 (124)
                      .|++|.+.+.     ..+-||+-  .+.-..     .+.....|.+..   ...+-+||-.|.+.... ..+ .=..|.|
T Consensus        26 ~v~~a~~L~~~d~~g~~dpyv~v--~~~~~~-----~~~~~~kT~~~~---~t~nP~wne~f~f~~~~~~~~-~~~~l~i   94 (141)
T 1v27_A           26 TILGAKDLPSREDGRPRNPYVKI--YFLPDR-----SDKNKRRTKTVK---KTLEPKWNQTFIYSPVHRREF-RERMLEI   94 (141)
T ss_dssp             EEEEEESCCCCSSSCCCCEEEEC--CCSSCC-----SSSSCCBCCCCS---SCSSCCCCCCCEECSCCTTGG-GTCEEEE
T ss_pred             EEEEccCCCCcCCCCCCCCEEEE--EEecCC-----CCCcceeCcccc---CCCCCccccEEEEccCCHHHh-cCCEEEE
Confidence            3556655543     25779998  664322     123334444433   22237899887776322 222 1268999


Q ss_pred             EEEeeeCCCC--eEEEeEeEEEeCC
Q psy5514          94 CVYGLDGFGN--DVIRGYGLCHLPI  116 (124)
Q Consensus        94 ~V~~~D~~gR--~~~~GYG~~~lP~  116 (124)
                      +||..|..++  +...|-..+.|..
T Consensus        95 ~V~d~d~~~~~~~~~lG~~~i~l~~  119 (141)
T 1v27_A           95 TLWDQARVREEESEFLGEILIELET  119 (141)
T ss_dssp             EEEEBCSSSSCCBCCCEEEEEEGGG
T ss_pred             EEEECCCCcCCCCceEEEEEEEccc
Confidence            9999999997  8888877776643

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.89  E-value=4  Score=27.38  Aligned_cols=84  Identities=13%  Similarity=0.010  Sum_probs=49.7

Q ss_pred             eeeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEE-EeCCCCCCCeEEE
Q psy5514          20 QLFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVF-KSNNPHGWPQLIL   93 (124)
Q Consensus        20 eIv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f-~s~~~~gWP~L~l   93 (124)
                      .|++|.+.+.     ..+-||+-  .+.-..       ...-.|.+..   ...+-+||--|.+.. ....+. =..|.|
T Consensus        31 ~v~~a~~L~~~d~~g~~dpyv~v--~~~~~~-------~~~~kT~v~~---~t~nP~wne~f~f~~~~~~~~~-~~~l~i   97 (141)
T 2d8k_A           31 KIMKAQELPAKDFSGTSDPFVKI--YLLPDK-------KHKLETKVKR---KNLNPHWNETFLFEGFPYEKVV-QRILYL   97 (141)
T ss_dssp             EEEEEESCCCCSSSSCCCEEEEE--EEESCC-------SSEEECCCCT---TCSSCCCCEEEEECSCCHHHHT-TSEEEE
T ss_pred             EEEEeECCCCCCCCCCCCcEEEE--EEECCC-------CccEeCceEc---CCCCCccccEEEECccCHHHcc-cCEEEE
Confidence            3555555543     35679998  765221       1222333321   222378887766642 111111 257999


Q ss_pred             EEEeeeCCCCeEEEeEeEEEeCC
Q psy5514          94 CVYGLDGFGNDVIRGYGLCHLPI  116 (124)
Q Consensus        94 ~V~~~D~~gR~~~~GYG~~~lP~  116 (124)
                      +||..|..+++...|-..+.|..
T Consensus        98 ~V~d~d~~~~~~~iG~~~i~l~~  120 (141)
T 2d8k_A           98 QVLDYDRFSRNDPIGEVSIPLNK  120 (141)
T ss_dssp             EEEECCSSSSCEEEEEEEEETTT
T ss_pred             EEEECCCCCCCcEEEEEEEEhhh
Confidence            99999999999999877776643

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.42  E-value=3.1  Score=27.89  Aligned_cols=91  Identities=14%  Similarity=0.058  Sum_probs=52.1

Q ss_pred             eeEEEEeeeeeecCCCCC----CceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCC
Q psy5514          13 CKQLHITQLFKIGHTEVG----TLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGW   88 (124)
Q Consensus        13 ~~~l~iGeIv~a~~F~~~----~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gW   88 (124)
                      ...|.| .|++|.+.+..    .+-||+-  .+.-...     ......|.+..   ...+-+||-.|.+......+. -
T Consensus        23 ~~~L~v-~v~~a~~L~~~d~~g~dpyv~v--~l~~~~~-----~~~~~kT~v~~---~t~nP~wne~f~f~v~~~~l~-~   90 (142)
T 2dmg_A           23 RNKLIV-VVHACRNLIAFSEDGSDPYVRM--YLLPDKR-----RSGRRKTHVSK---KTLNPVFDQSFDFSVSLPEVQ-R   90 (142)
T ss_dssp             TTEEEE-EEEEEECCCCSSTTCCCEEEEE--EEESCCC-----SSSCEECCCCC---SCSSCEEEEEEEECCCHHHHH-H
T ss_pred             CCEEEE-EEEEeECCCCCCCCCCCeeEEE--EEEcCCC-----CCCcccCCccC---CCCCCCcCceEEEEecHHHhC-c
Confidence            333433 45666666532    5789998  7753222     11233443332   222378998777754322111 1


Q ss_pred             CeEEEEEEeeeCCCC--eEEEeEeEEEeC
Q psy5514          89 PQLILCVYGLDGFGN--DVIRGYGLCHLP  115 (124)
Q Consensus        89 P~L~l~V~~~D~~gR--~~~~GYG~~~lP  115 (124)
                      ..|.|+||..|..++  +...|-..+.|-
T Consensus        91 ~~L~i~V~d~d~~~~~~~~~iG~~~i~l~  119 (142)
T 2dmg_A           91 RTLDVAVKNSGGFLSKDKGLLGKVLVALA  119 (142)
T ss_dssp             CEEEEEEEECCCSSCCSCCCCEEEEEECC
T ss_pred             CEEEEEEEECCCccccCCcEEEEEEEecc
Confidence            379999999998874  467777666553

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=86.13  E-value=5.9  Score=26.58  Aligned_cols=85  Identities=12%  Similarity=0.052  Sum_probs=51.8

Q ss_pred             eeeeecCCC----CCCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEE-EEeCCCCCCCeEEEE
Q psy5514          20 QLFKIGHTE----VGTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIV-FKSNNPHGWPQLILC   94 (124)
Q Consensus        20 eIv~a~~F~----~~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~-f~s~~~~gWP~L~l~   94 (124)
                      .|++|.+.+    ...+-||+-  .+.-+..     +.....|.+..   ...+-+||-.|.+. .....+. =..|.|+
T Consensus        25 ~V~~a~~L~~~~~g~~DPyv~v--~l~~~~~-----~~~~~kT~v~~---~t~nP~wnE~f~f~~v~~~~l~-~~~L~~~   93 (134)
T 2b3r_A           25 MVMHIKDLVTEDGADPNPYVKT--YLLPDTH-----KTSKRKTKISR---KTRNPTFNEMLVYSGYSKETLR-QRELQLS   93 (134)
T ss_dssp             EEEEEECCCCTTSCCCCEEEEE--EEESCSS-----SCCCEECCCCC---SCSSCEEEEEEEEESCCHHHHT-TCEEEEE
T ss_pred             EEEEeeCCCCCCCCCCCeEEEE--EEEcCCC-----CCceecCCcCc---CCCCCCCccEEEECCcCHHHhC-cCEEEEE
Confidence            355555554    235789998  7653211     22334444433   22237899776665 4332222 1589999


Q ss_pred             EEeeeCCCCeEEEeEeEEEeC
Q psy5514          95 VYGLDGFGNDVIRGYGLCHLP  115 (124)
Q Consensus        95 V~~~D~~gR~~~~GYG~~~lP  115 (124)
                      ||..|..+++...|-..+.|.
T Consensus        94 V~d~d~~~~~~~lG~~~i~l~  114 (134)
T 2b3r_A           94 VLSAESLRENFFLGGITLPLK  114 (134)
T ss_dssp             EEECCSSSCCEEEEEEEEEGG
T ss_pred             EEECCCCCCCcEEEEEEEEhh
Confidence            999999999999887766654

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.34  E-value=1.3  Score=30.15  Aligned_cols=83  Identities=12%  Similarity=0.116  Sum_probs=51.0

Q ss_pred             eeeeecCCCC------------CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCC
Q psy5514          20 QLFKIGHTEV------------GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHG   87 (124)
Q Consensus        20 eIv~a~~F~~------------~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~g   87 (124)
                      .|++|.+.+.            ..+-||+-  .+.-..       .....|.+..   ...+-+||-.|.+......+. 
T Consensus        31 ~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v--~l~~~~-------~~~~kT~v~~---~t~nP~wne~f~f~v~~~~l~-   97 (147)
T 2enp_A           31 RVIEARDLPPPISHDGSRQDMAHSNPYVKI--CLLPDQ-------KNSKQTGVKR---KTQKPVFEERYTFEIPFLEAQ-   97 (147)
T ss_dssp             EEEEEECCCCSCSSCCSSCTTCCCCCEEEE--EEETCC-------SSCEECCCCC---SCSSCCCCBCCEECCCHHHHH-
T ss_pred             EEEEEeCCCCccccccccccCCCCCcEEEE--EEEeCC-------CcceEeeccc---CCCCCeEeeeEEEEeChHHhc-
Confidence            4667766654            25779998  765321       1233444332   222378887777754321111 


Q ss_pred             CCeEEEEEEeeeCCCCeEEEeEeEEEeC
Q psy5514          88 WPQLILCVYGLDGFGNDVIRGYGLCHLP  115 (124)
Q Consensus        88 WP~L~l~V~~~D~~gR~~~~GYG~~~lP  115 (124)
                      =..|.|+||..|..+++...|-..+.|-
T Consensus        98 ~~~L~~~V~d~d~~~~~~~iG~~~i~l~  125 (147)
T 2enp_A           98 RRTLLLTVVDFDKFSRHCVIGKVSVPLC  125 (147)
T ss_dssp             HSEEEEEEECCSTTCCSCCCEEEEEETT
T ss_pred             cCEEEEEEEECCCCcCCcEEEEEEEech
Confidence            1379999999999999988887766653

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=84.23  E-value=8.6  Score=26.85  Aligned_cols=85  Identities=12%  Similarity=-0.041  Sum_probs=47.9

Q ss_pred             eeeeecCCC-----CCCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEE
Q psy5514          20 QLFKIGHTE-----VGTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILC   94 (124)
Q Consensus        20 eIv~a~~F~-----~~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~   94 (124)
                      .|++|.+.+     ...+-||+.  .+....+ +   ......|.+..   ...+-+||.-|.+......    ..|.|+
T Consensus        13 ~v~~a~~L~~~d~~g~~DPyv~v--~l~~~~~-~---~~~~~kT~v~~---~t~nP~Wne~f~f~v~~~~----~~L~~~   79 (176)
T 3m7f_B           13 KVIAGIGLAKKDILGASDPYVRV--TLYDPMS-G---ILTSVQTKTIK---KSLNPKWNEEILFRVLPQR----HRILFE   79 (176)
T ss_dssp             EEEEEESCC---CCCCCCEEEEE--EEEETTT-E---EEEEEECCCCS---SCSSCEEEEEEEEEECTTT----CEEEEE
T ss_pred             EEEEeeCCCCcCCCCCcCcEEEE--EEECCCC-C---cccceeCceEC---CCCCCcccceEEEEEcCCC----CEEEEE
Confidence            455555553     335679998  7664211 0   00122333322   2222789987766654221    689999


Q ss_pred             EEeeeCCCCeEEEeEeEEEeCCC
Q psy5514          95 VYGLDGFGNDVIRGYGLCHLPIS  117 (124)
Q Consensus        95 V~~~D~~gR~~~~GYG~~~lP~~  117 (124)
                      ||..|..+++...|-..+.|-..
T Consensus        80 V~d~d~~~~d~~lG~~~i~l~~l  102 (176)
T 3m7f_B           80 VFDENRLTRDDFLGQVDVPLYPL  102 (176)
T ss_dssp             EEECC----CEEEEEEEEESCSC
T ss_pred             EEECCCCCCCcEEEEEEEEHHHc
Confidence            99999999999988877766543

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=84.14  E-value=8.7  Score=26.86  Aligned_cols=82  Identities=10%  Similarity=0.088  Sum_probs=49.0

Q ss_pred             eeeeecCCCC------CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEE
Q psy5514          20 QLFKIGHTEV------GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLIL   93 (124)
Q Consensus        20 eIv~a~~F~~------~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l   93 (124)
                      .|++|.+.+.      ..+-||+-  .+.....+     .....|.+..   ...+-+||--|.+....   .. ..|.|
T Consensus        35 ~v~~a~~L~~~d~~~g~~DPyv~v--~l~~~~~~-----~~~~kT~v~~---~t~nP~wne~f~f~v~~---~~-~~L~~  100 (171)
T 2q3x_A           35 EVIRARSLTQKPGSKSTPAPYVKV--YLLENGAC-----IAKKKTRIAR---KTLDPLYQQSLVFDESP---QG-KVLQV  100 (171)
T ss_dssp             EEEEEESCCCCC---CCCEEEEEE--EEEETTEE-----EEEEECCCCC---SCSSCEEEEEEECSSCC---TT-EEEEE
T ss_pred             EEEEeeCCCCCCcCCCCCCceEEE--EEECCCcc-----ccceeCccCC---CCCCCCCCcEEEEEecC---CC-CEEEE
Confidence            3555655543      24579998  66542221     1233344332   22237888765554321   22 78999


Q ss_pred             EEE-eeeCCCCeEEEeEeEEEeC
Q psy5514          94 CVY-GLDGFGNDVIRGYGLCHLP  115 (124)
Q Consensus        94 ~V~-~~D~~gR~~~~GYG~~~lP  115 (124)
                      +|| ..|..+++...|-..+.|-
T Consensus       101 ~V~~d~d~~~~d~~iG~~~i~l~  123 (171)
T 2q3x_A          101 IVWGDYGRMDHKCFMGVAQILLE  123 (171)
T ss_dssp             EEEEECSTTCSSEEEEEEEECGG
T ss_pred             EEEEcCCCCCCCCEEEEEEEEHH
Confidence            999 9999999999887766554

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=83.57  E-value=9.8  Score=27.00  Aligned_cols=65  Identities=11%  Similarity=0.046  Sum_probs=43.3

Q ss_pred             CceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEEEEeeeCCCCeEEEeEe
Q psy5514          31 TLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYG  110 (124)
Q Consensus        31 ~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~V~~~D~~gR~~~~GYG  110 (124)
                      .+-||+-  .+.         +..-+.|.+-.   ...+-+||--|++.....     -.|.|+||..|..+++...|-.
T Consensus        60 sDPYv~v--~l~---------~~~~~kT~v~~---ktlnP~WNE~F~f~v~~~-----~~L~~~V~D~d~~~~dd~iG~~  120 (157)
T 2fk9_A           60 LDPYLTV--SVD---------QVRVGQTSTKQ---KTNKPTYNEEFCANVTDG-----GHLELAVFHETPLGYDHFVANC  120 (157)
T ss_dssp             CCEEEEE--EET---------TEEEEECCCCS---SCSSCEEEEEEEEEEEEE-----CEEEEEEEECCSSSSCEEEEEE
T ss_pred             CCeEEEE--EEC---------CEeeEEeeecC---CCCCCccCcEEEEEcCCC-----CEEEEEEEECCCCCCCCEEEEE
Confidence            4679988  652         22234454422   122378998777765432     3899999999999999998877


Q ss_pred             EEEe
Q psy5514         111 LCHL  114 (124)
Q Consensus       111 ~~~l  114 (124)
                      .+.|
T Consensus       121 ~i~l  124 (157)
T 2fk9_A          121 TLQF  124 (157)
T ss_dssp             EEEH
T ss_pred             EEEH
Confidence            6654

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=82.64  E-value=9.2  Score=26.04  Aligned_cols=82  Identities=7%  Similarity=0.014  Sum_probs=49.4

Q ss_pred             eeeecCCCC----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEEEE
Q psy5514          21 LFKIGHTEV----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCVY   96 (124)
Q Consensus        21 Iv~a~~F~~----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~V~   96 (124)
                      |++|.+.+.    ..+-||+-  .+.-....     .....|.+..   ...+-+||--|.+......+.  -.|.|+||
T Consensus        33 v~~a~~L~~~d~g~~Dpyv~v--~l~~~~~~-----~~~~kT~v~~---~t~nP~wne~f~f~v~~~~~~--~~L~i~V~  100 (153)
T 3fbk_A           33 IIEGKGLISKQPGTCDPYVKI--SLIPEDSR-----LRHQKTQTVP---DCRDPAFHEHFFFPVQEEDDQ--KRLLVTVW  100 (153)
T ss_dssp             EEEEESCCCCSSSCCCEEEEE--EEESCSCC-----TTCEECCCCT---TCSSCEEEEEEEEECCGGGTT--SEEEEEEE
T ss_pred             EEEeeCCCCCCCCCCCEEEEE--EEEcCCCC-----ccEEeccccC---CCCCCccccEEEEecccHHhC--CEEEEEEE
Confidence            444554433    35789998  76532211     1223333322   222378998777765444444  25999999


Q ss_pred             eeeCCCC-eEEEeEeEEEe
Q psy5514          97 GLDGFGN-DVIRGYGLCHL  114 (124)
Q Consensus        97 ~~D~~gR-~~~~GYG~~~l  114 (124)
                      ..|..++ +...|-..+.|
T Consensus       101 d~d~~~~~d~~lG~~~i~l  119 (153)
T 3fbk_A          101 NRASQSRQSGLIGCMSFGV  119 (153)
T ss_dssp             ECCSSGGGCEEEEEEEEEH
T ss_pred             eCCCCCCCCcEEEEEEEEH
Confidence            9999987 88887766554

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=80.80  E-value=9.9  Score=28.81  Aligned_cols=80  Identities=10%  Similarity=0.051  Sum_probs=50.4

Q ss_pred             eeeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEE
Q psy5514          20 QLFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILC   94 (124)
Q Consensus        20 eIv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~   94 (124)
                      .|++|.+.+.     ..+-||+-  .+.-       .+.....|.+..   ...+-+||--|.+......++. ..|.|+
T Consensus        25 ~v~~a~~L~~~d~~g~~dPyv~v--~l~~-------~~~~~~kT~v~~---~t~nP~wne~f~f~v~~~~l~~-~~L~~~   91 (296)
T 1dqv_A           25 RILQALDLPAKDSNGFSDPYVKI--YLLP-------DRKKKFQTKVHR---KTLNPIFNETFQFSVPLAELAQ-RKLHFS   91 (296)
T ss_dssp             EEEEEECCCCCSTTSCCCEEEEE--ECTT-------STTSCEECCCCC---SCSSCEEEEEEEEECCGGGGSS-CCCEEE
T ss_pred             EEEEeECCCCcCCCCCcCeEEEE--EEEc-------CCCeeEeCCccC---CCCCCcEeeEEEEEecHHHhcC-CEEEEE
Confidence            3556655543     35679998  6531       122233444432   2223789988777754444333 679999


Q ss_pred             EEeeeCCCCeEEEeEeEE
Q psy5514          95 VYGLDGFGNDVIRGYGLC  112 (124)
Q Consensus        95 V~~~D~~gR~~~~GYG~~  112 (124)
                      ||..|.++++...|...+
T Consensus        92 V~d~d~~~~~~~iG~~~i  109 (296)
T 1dqv_A           92 VYDFDRFSRHDLIGQVVL  109 (296)
T ss_dssp             EEECCSSSCCCEEEEEEC
T ss_pred             EEEcCCCCCCceEEEEEe
Confidence            999999999999887654

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=80.14  E-value=9.7  Score=24.65  Aligned_cols=80  Identities=10%  Similarity=0.053  Sum_probs=51.8

Q ss_pred             eeeeecCCCC--------CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeE
Q psy5514          20 QLFKIGHTEV--------GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQL   91 (124)
Q Consensus        20 eIv~a~~F~~--------~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L   91 (124)
                      .|++|.+.+.        ..+-||+.  .+.-.+       .....|.+..   ...+-+||-.|++......   =..|
T Consensus         8 ~v~~a~~L~~~~~~d~~g~~dpyv~v--~~~~~~-------~~~~kT~v~~---~t~nP~wne~f~f~v~~~~---~~~l   72 (126)
T 1rlw_A            8 VVLRATKVTKGAFGDMLDTPDPYVEL--FISTTP-------DSRKRTRHFN---NDINPVWNETFEFILDPNQ---ENVL   72 (126)
T ss_dssp             EEEEEESCCSCHHHHHHCCCCEEEEE--ECTTST-------TCCEECCCCT---TCSSCEEEEEEEEEECTTS---CCEE
T ss_pred             EEEeeeCCCCCCccccCCCCCCEEEE--EEccCC-------CceEEccccC---CCCCCcccceEEEEecCCC---CCEE
Confidence            5677777764        35789998  654321       1333443332   2223899988888764332   2589


Q ss_pred             EEEEEeeeCCCCeEEEeEeEEEeC
Q psy5514          92 ILCVYGLDGFGNDVIRGYGLCHLP  115 (124)
Q Consensus        92 ~l~V~~~D~~gR~~~~GYG~~~lP  115 (124)
                      .|+||..|..+ +...|...+.|.
T Consensus        73 ~i~V~d~d~~~-~~~iG~~~i~l~   95 (126)
T 1rlw_A           73 EITLMDANYVM-DETLGTATFTVS   95 (126)
T ss_dssp             EEEEEECCSSC-CEEEEEEEEEGG
T ss_pred             EEEEEECCCCC-CceeEEEEEEHH
Confidence            99999999874 778887777664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	124
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	94.34
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	94.15
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	93.56
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	92.0
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	91.98
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	91.89
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	91.82
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	90.71
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	90.59
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	90.26
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	90.01
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	85.32
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	82.03

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.34  E-value=0.34  Score=31.64  Aligned_cols=65  Identities=11%  Similarity=0.202  Sum_probs=46.1

Q ss_pred             CceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEEEEeeeCCCCeEEEeEe
Q psy5514          31 TLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYG  110 (124)
Q Consensus        31 ~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~V~~~D~~gR~~~~GYG  110 (124)
                      .+=||+-  .+  +.        ....|.+..   +..+..||-.|++....     ...|.|+||..|.++++...|..
T Consensus        27 ~dpyv~v--~~--~~--------~~~kT~v~~---~t~nP~wne~f~f~~~~-----~~~l~~~V~d~d~~~~d~~iG~~   86 (133)
T d2nq3a1          27 PSPYVEV--TV--DG--------QSKKTEKCN---NTNSPKWKQPLTVIVTP-----VSKLHFRVWSHQTLKSDVLLGTA   86 (133)
T ss_dssp             CCEEEEE--EE--TT--------EEEECCCCS---SCSSCEEEEEEEEEECT-----TCEEEEEEEECCSSSCCEEEEEE
T ss_pred             cCeEEEE--EE--CC--------eEEeeEEEE---ecccEEEcceEEEEEEe-----cceeEEEEEEccCCCCCceEEEE
Confidence            5678887  54  22        234554432   22338999988876532     35899999999999999999999


Q ss_pred             EEEeC
Q psy5514         111 LCHLP  115 (124)
Q Consensus       111 ~~~lP  115 (124)
                      .+.|.
T Consensus        87 ~i~L~   91 (133)
T d2nq3a1          87 ALDIY   91 (133)
T ss_dssp             EEEHH
T ss_pred             EEEHH
Confidence            88764

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.15  E-value=0.11  Score=33.89  Aligned_cols=82  Identities=12%  Similarity=0.016  Sum_probs=51.4

Q ss_pred             eEEEE--eeeeeecCCCCCCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCC-ceEEecceEEEEEeCCCCCCCe
Q psy5514          14 KQLHI--TQLFKIGHTEVGTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCP-QFVWNFPIEIVFKSNNPHGWPQ   90 (124)
Q Consensus        14 ~~l~i--GeIv~a~~F~~~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~-~~~w~~P~di~f~s~~~~gWP~   90 (124)
                      -+++|  ++-+...+.-...+-||+.  .+.             ++++..+...+.+ +-.||-=|++......    -.
T Consensus        12 L~V~v~~a~~L~~~d~~g~~Dpyv~v--~~~-------------~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~----~~   72 (136)
T d1wfja_          12 LEVVLVSAKGLEDADFLNNMDPYVQL--TCR-------------TQDQKSNVAEGMGTTPEWNETFIFTVSEGT----TE   72 (136)
T ss_dssp             EEEEEEEEEECSSCCSSCSSCCCEEE--ESS-------------SCEEECCCCTTCCSSCEEEEEEEEEEESSC----CE
T ss_pred             EEEEEEEeeCCCCCCCCCCCCccEEE--EEe-------------eeeEEEEEEecCCCcEEEeeEEEEEEcCcc----ce
Confidence            34444  5555555543435679998  652             1233333222223 3899987776665422    35


Q ss_pred             EEEEEEeeeCCCCeEEEeEeEEEe
Q psy5514          91 LILCVYGLDGFGNDVIRGYGLCHL  114 (124)
Q Consensus        91 L~l~V~~~D~~gR~~~~GYG~~~l  114 (124)
                      |.|+||..|..+++...|...+.|
T Consensus        73 L~v~V~d~d~~~~d~~iG~~~i~L   96 (136)
T d1wfja_          73 LKAKIFDKDVGTEDDAVGEATIPL   96 (136)
T ss_dssp             EEEEECCSSSCTTTCCSEEEEEES
T ss_pred             EEEEEEEecCCCCCCEEEEEEEEh
Confidence            999999999999999999877765

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.56  E-value=0.52  Score=30.26  Aligned_cols=84  Identities=10%  Similarity=-0.037  Sum_probs=53.4

Q ss_pred             eeeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEE
Q psy5514          20 QLFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILC   94 (124)
Q Consensus        20 eIv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~   94 (124)
                      .|++|.+.+.     ..+-||+-  .+..+..     +...-.|.+..   +..+.+||.-|.+......  .=..|.|+
T Consensus        20 ~V~~a~~L~~~d~~g~~DpYv~v--~l~~~~~-----~~~~~kT~v~~---~t~nP~wne~f~f~v~~~~--~~~~L~i~   87 (132)
T d1a25a_          20 VVRDAKNLVPMDPNGLSDPYVKL--KLIPDPK-----SESKQKTKTIK---CSLNPEWNETFRFQLKESD--KDRRLSVE   87 (132)
T ss_dssp             EEEEEESCCCCSTTSCCCEEEEE--EEESCTT-----CSSCEECCCCS---SCSSCEEEEEEEEECCSGG--GGCEEEEE
T ss_pred             EEEeeeCCCCCCCCCCcCeEEEE--EEccCCC-----CccccEEeeec---CCCCCccceEEEEEeEccc--cCCEEeEE
Confidence            6677777653     24569999  7755332     12233444432   2233789987766553221  11479999


Q ss_pred             EEeeeCCCCeEEEeEeEEEeC
Q psy5514          95 VYGLDGFGNDVIRGYGLCHLP  115 (124)
Q Consensus        95 V~~~D~~gR~~~~GYG~~~lP  115 (124)
                      ||..|..+++.+.|...+.|-
T Consensus        88 V~d~d~~~~d~~iG~~~i~l~  108 (132)
T d1a25a_          88 IWDWDLTSRNDFMGSLSFGIS  108 (132)
T ss_dssp             EEECCSSSCCEEEEEEEEEHH
T ss_pred             EEecCCCCCCcEeEEEEEeHH
Confidence            999999999999888777663

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.00  E-value=1  Score=29.76  Aligned_cols=93  Identities=11%  Similarity=0.066  Sum_probs=56.5

Q ss_pred             cCceeEEEEeeeeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCC
Q psy5514          10 YGSCKQLHITQLFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNN   84 (124)
Q Consensus        10 ~~~~~~l~iGeIv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~   84 (124)
                      .+...+|.| .|+.|.+.+.     ..+-||+-  .+..+.. +.    ..-.|.+.   .+..+.+||.-|.+......
T Consensus        21 ~~~~~~L~V-~V~~a~~L~~~~~~~~~dpyV~v--~l~~~~~-~~----~~~kT~v~---~~t~nP~wne~f~F~v~~~~   89 (157)
T d1uowa_          21 VPTAGKLTV-VILEAKNLKKMDVGGLSDPYVKI--HLMQNGK-RL----KKKKTTIK---KNTLNPYYNESFSFEVPFEQ   89 (157)
T ss_dssp             ETTTTEEEE-EEEEEESCCCCSTTSCCCEEEEE--EEEETTE-EE----EEEECCCC---CSCSSCEEEEEEEEECCGGG
T ss_pred             cCCCCEEEE-EEEEEEEcccccCCCCCCeeEEE--EEecCCc-cc----cceecccc---cCCCCcccCCeEEEEecHHH
Confidence            344445555 3677777653     35679998  6653211 11    11223322   22233789998887654443


Q ss_pred             CCCCCeEEEEEEeeeCCCCeEEEeEeEEEe
Q psy5514          85 PHGWPQLILCVYGLDGFGNDVIRGYGLCHL  114 (124)
Q Consensus        85 ~~gWP~L~l~V~~~D~~gR~~~~GYG~~~l  114 (124)
                      +.. -.|.++||..|..+|+...|.-.+.+
T Consensus        90 l~~-~~l~i~v~d~~~~~~~~~iG~~~i~l  118 (157)
T d1uowa_          90 IQK-VQVVVTVLDYDKIGKNDAIGKVFVGY  118 (157)
T ss_dssp             GGG-CEEEEEEEECCSSSCCCEEEEEEEET
T ss_pred             cCc-cEEEEEEcccCCCCCCceeEEEEEec
Confidence            322 47999999999999999998765554

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.98  E-value=0.79  Score=29.80  Aligned_cols=90  Identities=13%  Similarity=0.099  Sum_probs=54.0

Q ss_pred             eEEEEeeeeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCC
Q psy5514          14 KQLHITQLFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGW   88 (124)
Q Consensus        14 ~~l~iGeIv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gW   88 (124)
                      .+|+| .|++|.+.+.     ..+-||+-  .+.-...       ..-.|.+.   ....+..||.-|.+......+. =
T Consensus        34 ~~L~V-~V~~a~~L~~~~~~g~~dpyV~v--~l~~~~~-------~~~kT~~~---~~t~~P~wne~f~f~i~~~~l~-~   99 (143)
T d1rsya_          34 NQLLV-GIIQAAELPALDMGGTSDPYVKV--FLLPDKK-------KKFETKVH---RKTLNPVFNEQFTFKVPYSELG-G   99 (143)
T ss_dssp             TEEEE-EEEEEESCCCCSTTSCCCEEEEE--EEETTCC-------SCEECCCC---TTCSSCEEEEEEEECCCHHHHT-T
T ss_pred             CEEEE-EEEEccCCCCCCCCCCCCeEEEE--EEcCCCC-------eeEEEEEe---ccccCcceeeeeEEEEEeeccC-C
Confidence            34444 4566666653     24579998  6643211       12233332   2223378998777654332221 1


Q ss_pred             CeEEEEEEeeeCCCCeEEEeEeEEEeCCC
Q psy5514          89 PQLILCVYGLDGFGNDVIRGYGLCHLPIS  117 (124)
Q Consensus        89 P~L~l~V~~~D~~gR~~~~GYG~~~lP~~  117 (124)
                      -.|.|+||..|..+++...|.-.+.|-..
T Consensus       100 ~~L~i~V~d~d~~~~~~~iG~~~i~L~~~  128 (143)
T d1rsya_         100 KTLVMAVYDFDRFSKHDIIGEFKVPMNTV  128 (143)
T ss_dssp             CEEEEEEEECCSSSCCEEEEEEEEEGGGC
T ss_pred             ceEEEEEEEcCCCCCCcEEEEEEEEchhc
Confidence            36999999999999999988877766543

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=91.89  E-value=0.9  Score=29.49  Aligned_cols=41  Identities=12%  Similarity=0.103  Sum_probs=33.1

Q ss_pred             ceEEecceEEEEEeCCCCCCCeEEEEEEeeeCCCCeEEEeEeEEEe
Q psy5514          69 QFVWNFPIEIVFKSNNPHGWPQLILCVYGLDGFGNDVIRGYGLCHL  114 (124)
Q Consensus        69 ~~~w~~P~di~f~s~~~~gWP~L~l~V~~~D~~gR~~~~GYG~~~l  114 (124)
                      +-+||.-|++.....     -+|.|+||..|..+++.+.|...+.|
T Consensus        62 ~P~Wne~f~f~v~~~-----~~l~i~V~d~~~~~~d~~iG~~~i~l  102 (136)
T d1gmia_          62 SPAWHDEFVTDVCNG-----RKIELAVFHDAPIGYDDFVANCTIQF  102 (136)
T ss_dssp             SCEEEEEEEEEEEEE-----CEEEEEEEECCSSSSCEEEEEEEEEH
T ss_pred             CccCccEEEEEEecC-----CceEEEEEEecCCCCceeEEEEEEEH
Confidence            379998888776432     37999999999999999988887765

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.82  E-value=0.93  Score=28.85  Aligned_cols=96  Identities=13%  Similarity=-0.015  Sum_probs=58.4

Q ss_pred             EeecCceeEEEEeeeeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEE
Q psy5514           7 VNVYGSCKQLHITQLFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFK   81 (124)
Q Consensus         7 ~~~~~~~~~l~iGeIv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~   81 (124)
                      +.-.+...+|.| .|++|.+.+.     ..+.||+-  .+..+ +...    ..-.|-+.   .+..+.+||.-|.+...
T Consensus         8 l~Y~~~~~~L~V-~v~~a~nL~~~~~~~~~dpyv~v--~l~~~-~~~~----~~~kT~v~---~~t~~P~wne~f~f~v~   76 (137)
T d2cm5a1           8 LMYSTQQGGLIV-GIIRCVHLAAMDANGYSDPFVKL--WLKPD-MGKK----AKHKTQIK---KKTLNPEFNEEFFYDIK   76 (137)
T ss_dssp             EEEETTTTEEEE-EEEEEESCCCCSTTSCCCEEEEE--EEETC----C----CEEECCCC---CSCSSCEEEEEEEEECC
T ss_pred             EEEECCCCEEEE-EEEEEECCCCCCCCCCcCeEEEE--EEEcC-Cccc----eeecCEeE---cCCCCCccceEEEEEeE
Confidence            333455555554 6777777753     35589999  77542 2211    11223222   22233789988877654


Q ss_pred             eCCCCCCCeEEEEEEeeeCCCCeEEEeEeEEEe
Q psy5514          82 SNNPHGWPQLILCVYGLDGFGNDVIRGYGLCHL  114 (124)
Q Consensus        82 s~~~~gWP~L~l~V~~~D~~gR~~~~GYG~~~l  114 (124)
                      ...+.. ..|.++||..|..+++.+.|.-.+.+
T Consensus        77 ~~~l~~-~~l~v~v~~~~~~~~~~~iG~~~i~l  108 (137)
T d2cm5a1          77 HSDLAK-KSLDISVWDYDIGKSNDYIGGCQLGI  108 (137)
T ss_dssp             GGGGGG-CEEEEEEEECCSSSCCEEEEEEEEET
T ss_pred             HHHccc-cEEEEEeeeCCCCCCCCEEEEEEeCc
Confidence            443332 47999999999999999988766655

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.71  E-value=0.84  Score=29.21  Aligned_cols=94  Identities=12%  Similarity=0.102  Sum_probs=55.3

Q ss_pred             EEeecCceeEEEEeeeeeecCCCCC-----CceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEE
Q psy5514           6 TVNVYGSCKQLHITQLFKIGHTEVG-----TLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVF   80 (124)
Q Consensus         6 ~~~~~~~~~~l~iGeIv~a~~F~~~-----~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f   80 (124)
                      ++.-.+.-.+|.| .|++|.+.+..     .+-||+-  .+...       +...-.|.+.   .+..+.+||.-|.+..
T Consensus        10 sl~y~~~~~~L~V-~V~~a~~L~~~~~~g~~dpyv~v--~l~~~-------~~~~~kT~v~---~~t~~P~wne~f~f~v   76 (130)
T d1dqva1          10 ALRYLYGSDQLVV-RILQALDLPAKDSNGFSDPYVKI--YLLPD-------RKKKFQTKVH---RKTLNPIFNETFQFSV   76 (130)
T ss_dssp             EEECCSSSCEEEE-EEEEEECCCCCSTTSCCCEEEEE--ECTTS-------TTSCEECCCC---CSCSSCEEEEEEEEEC
T ss_pred             EEEEECCCCEEEE-EEEeeeCCccccCCCCcceEEEE--EEccC-------CCceEeceeE---cCCCCeeeeeEEEEEE
Confidence            3443444455555 36677776532     4569988  65221       1122222221   2323388998777765


Q ss_pred             EeCCCCCCCeEEEEEEeeeCCCCeEEEeEeEEEeC
Q psy5514          81 KSNNPHGWPQLILCVYGLDGFGNDVIRGYGLCHLP  115 (124)
Q Consensus        81 ~s~~~~gWP~L~l~V~~~D~~gR~~~~GYG~~~lP  115 (124)
                      ....+.. -.|.|+||..|..+++...|.  +.||
T Consensus        77 ~~~~~~~-~~L~v~V~d~~~~~~d~~iG~--~~i~  108 (130)
T d1dqva1          77 PLAELAQ-RKLHFSVYDFDRFSRHDLIGQ--VVLD  108 (130)
T ss_dssp             CGGGGSS-CCCEEEEEECCSSSCCCEEEE--EECC
T ss_pred             chHHcCC-CeEEEEEEEcCCCCCCceEEE--EEEC
Confidence            4444433 358999999999999998774  5555

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.59  E-value=1.3  Score=28.32  Aligned_cols=91  Identities=7%  Similarity=-0.068  Sum_probs=53.6

Q ss_pred             eeeeeecCCCC-------CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeE
Q psy5514          19 TQLFKIGHTEV-------GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQL   91 (124)
Q Consensus        19 GeIv~a~~F~~-------~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L   91 (124)
                      =+|++|.+.+.       ..+-||+-  .+.-...-     ...-.|.+..  .+.-+-.||--|++......   -..|
T Consensus         8 V~Vi~a~~L~~~~~~~~~~~DPyV~v--~l~g~~~~-----~~~~~T~~v~--~~~~nP~wne~f~f~~~~~~---~~~L   75 (131)
T d1qasa2           8 VRIISGQQLPKVNKNKNSIVDPKVIV--EIHGVGRD-----TGSRQTAVIT--NNGFNPRWDMEFEFEVTVPD---LALV   75 (131)
T ss_dssp             EEEEEEESCCCCC-----CCCEEEEE--EEESSTTT-----CEEEECCCCS--SCSSSCEEEEEEEEEESCGG---GCEE
T ss_pred             EEEEEeeCCCCCCCCCCCCcCeEEEE--EEccCCCC-----cEEEEEEEEe--cccCCceEEEEEEEEEEcch---hceE
Confidence            36777777742       13579998  76532211     1112222211  12113789987766554332   2579


Q ss_pred             EEEEEeeeCCCCeEEEeEeEEEeCCC-Ccee
Q psy5514          92 ILCVYGLDGFGNDVIRGYGLCHLPIS-SGTT  121 (124)
Q Consensus        92 ~l~V~~~D~~gR~~~~GYG~~~lP~~-pG~h  121 (124)
                      .|+||..|..+++...|-..+.|-.- ||.+
T Consensus        76 ~~~V~D~d~~~~d~~iG~~~i~l~~l~~g~~  106 (131)
T d1qasa2          76 RFMVEDYDSSSKNDFIGQSTIPWNSLKQGYR  106 (131)
T ss_dssp             EEEEEECCTTTCCEEEEEEEEEGGGBCCEEE
T ss_pred             EEEEEEecCCCCCcEEEEEEEEEeccCCCCE
Confidence            99999999999999887776655332 4554

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.26  E-value=0.9  Score=28.78  Aligned_cols=76  Identities=17%  Similarity=0.120  Sum_probs=47.0

Q ss_pred             eeeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEE
Q psy5514          20 QLFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILC   94 (124)
Q Consensus        20 eIv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~   94 (124)
                      .|++|.+-+.     ..+-||+-  .+  +.        ..-.|.+..   +..+-.||.-|.+...  .+.  ..|.|+
T Consensus        11 ~v~~A~~L~~~d~~g~~Dpyv~v--~~--~~--------~~~~T~~~~---~t~nP~wne~f~f~v~--~~~--~~L~i~   71 (126)
T d2ep6a1          11 KVLKAADLLAADFSGKSDPFCLL--EL--GN--------DRLQTHTVY---KNLNPEWNKVFTFPIK--DIH--DVLEVT   71 (126)
T ss_dssp             EEEEEESCCCSSSSSCCCEEEEE--EE--TT--------EEEECCCCS---SCSSCCCCEEEEEEES--CTT--CEEEEE
T ss_pred             EEEEeECCCCCCCCCCcCeEEEE--Ec--CC--------eEEEEEeeC---CceeEEEEEEEEEEEe--ccC--ceeEEE
Confidence            3455555443     24569998  65  22        223343322   2223688887666543  333  479999


Q ss_pred             EEeeeCCCCeEEEeEeEEEe
Q psy5514          95 VYGLDGFGNDVIRGYGLCHL  114 (124)
Q Consensus        95 V~~~D~~gR~~~~GYG~~~l  114 (124)
                      ||..|..+++...|-..+.|
T Consensus        72 V~d~~~~~~d~~lG~~~i~l   91 (126)
T d2ep6a1          72 VFDEDGDKPPDFLGKVAIPL   91 (126)
T ss_dssp             EEEEETTEEEEECCBCEEEG
T ss_pred             EEEccCCcCcceEEEEEEEH
Confidence            99999999999887766654

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.01  E-value=1.5  Score=28.13  Aligned_cols=95  Identities=9%  Similarity=-0.014  Sum_probs=56.4

Q ss_pred             EeecCceeEEEEeeeeeecCCCC-----CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEE
Q psy5514           7 VNVYGSCKQLHITQLFKIGHTEV-----GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFK   81 (124)
Q Consensus         7 ~~~~~~~~~l~iGeIv~a~~F~~-----~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~   81 (124)
                      +.-.+...+|.|. |++|++.+.     ..+-||+-  .+..+ +.      .....++... ....+..||.-|.+...
T Consensus         8 l~Y~~~~~~L~V~-v~~a~~L~~~~~~~~~dpyvkv--~l~~~-~~------~~~~~kT~~~-~~t~~P~wne~f~F~v~   76 (138)
T d1w15a_           8 LCYQSTTNTLTVV-VLKARHLPKSDVSGLSDPYVKV--NLYHA-KK------RISKKKTHVK-KCTPNAVFNELFVFDIP   76 (138)
T ss_dssp             EEEETTTTEEEEE-EEEEESCC------CCCEEEEE--EEEET-TE------EEEEEECCCC-CSCSSEEEEEEEEEECC
T ss_pred             EEEcCCCCEEEEE-EEEeECCCCCCCCCCcCEEEEE--EEeCC-cc------cCccccceeE-CCCCCCeECcEEEEEec
Confidence            3334554555553 677777653     24579998  66432 11      2222233222 22234889987776554


Q ss_pred             eCCCCCCCeEEEEEEeeeCCCCeEEEeEeEEE
Q psy5514          82 SNNPHGWPQLILCVYGLDGFGNDVIRGYGLCH  113 (124)
Q Consensus        82 s~~~~gWP~L~l~V~~~D~~gR~~~~GYG~~~  113 (124)
                      ...+.. ..|.|+||..|..+++.+.|.-.+.
T Consensus        77 ~~~~~~-~~l~i~v~d~~~~~~~~~iG~~~i~  107 (138)
T d1w15a_          77 CESLEE-ISVEFLVLDSERGSRNEVIGRLVLG  107 (138)
T ss_dssp             SSSSTT-EEEEEEEEECCTTSCCEEEEEEEES
T ss_pred             HHHhCc-cEEEEEEEeCCCCCCCCEEEEEEEc
Confidence            444433 4699999999999999998844443

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.32  E-value=3.2  Score=26.57  Aligned_cols=84  Identities=11%  Similarity=0.038  Sum_probs=52.1

Q ss_pred             eeeeecCCCC--CCceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEEEeCCCCCCCeEEEEEEe
Q psy5514          20 QLFKIGHTEV--GTLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVFKSNNPHGWPQLILCVYG   97 (124)
Q Consensus        20 eIv~a~~F~~--~~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f~s~~~~gWP~L~l~V~~   97 (124)
                      .|+.|.+.+.  ..+-||+-  .+.-  +.+    ...-+|.+.   ....+.+||--|.+.+....+. --.|.|+||.
T Consensus        31 ~v~~a~~L~~~g~~dpyVkv--~l~~--~~~----~~~~kT~v~---~~~~~P~wne~f~f~v~~~~l~-~~~L~~~V~d   98 (138)
T d1wfma_          31 TRLEAVTSNHDGGCDCYVQG--SVAN--RTG----SVEAQTALK---KRQLHTTWEEGLVLPLAEEELP-TATLTLTLRT   98 (138)
T ss_dssp             EEEEEECCCCSSCCCEEEEE--EEEE--TTE----EEEEECCCC---CCCSSEECSSCEEEECCTTSST-TCEEEEEEEE
T ss_pred             EEEEcCCCCCCCCcCcEEEE--EECC--CCC----ccceeeeEE---CCCCCceEeeeEEEEeeehhcc-ceEEEEEEee
Confidence            4556666654  24579998  6642  111    111222222   2223488998877775444333 3579999999


Q ss_pred             eeCCCCeEEEeEeEEEeC
Q psy5514          98 LDGFGNDVIRGYGLCHLP  115 (124)
Q Consensus        98 ~D~~gR~~~~GYG~~~lP  115 (124)
                      .|..+++.+.|.-.+.|-
T Consensus        99 ~~~~~~~~~iG~~~i~L~  116 (138)
T d1wfma_          99 CDRFSRHSVAGELRLGLD  116 (138)
T ss_dssp             CCSSCTTSCSEEEEEESS
T ss_pred             ecccccceeeeEEEEEhH
Confidence            999999999888777653

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.03  E-value=2.1  Score=26.89  Aligned_cols=91  Identities=7%  Similarity=-0.016  Sum_probs=45.0

Q ss_pred             eEEEEeeeeeecCCCCC-----CceEEEeeeeeecCCCCeecCCceeeeeEEeeCCCCCCceEEecceEEEE-EeCCCCC
Q psy5514          14 KQLHITQLFKIGHTEVG-----TLGVCRYLGCLGVSRYLRKLFGIEEGISQISKHTAGCPQFVWNFPIEIVF-KSNNPHG   87 (124)
Q Consensus        14 ~~l~iGeIv~a~~F~~~-----~~L~c~y~~~~~~g~~W~~~~G~~~G~TQ~~~~~~~~~~~~w~~P~di~f-~s~~~~g   87 (124)
                      .+|+| .|++|.+.+..     .+-||+-  .+.-+ ..+    .....|-+.   .+..+..||.-|.+.. ....+..
T Consensus        14 ~~L~V-~V~~a~~L~~~~~~~~~dpyVkv--~l~~~-~~~----~~~~kT~~~---~~t~~P~wne~f~f~~~~~~~l~~   82 (125)
T d2bwqa1          14 HQLIV-TILGAKDLPSREDGRPRNPYVKI--YFLPD-RSD----KNKRRTKTV---KKTLEPKWNQTFIYSPVHRREFRE   82 (125)
T ss_dssp             TEEEE-EEEEEESCCCCTTSCCBCEEEEE--EEESS-CSG----GGEEECCCC---SSBSSCEEEEEEEECSCCGGGGGG
T ss_pred             CEEEE-EEEEeECCCCcCCCCCCCEEEEE--EEeCC-CCC----ccccccCEE---cCCCCCEEccEEEEeeeChhhcCC
Confidence            44444 46777777532     3469998  76422 111    112222221   2323478987655542 2222222


Q ss_pred             CCeEEEEEEeeeCCCCeEEEeEeEEEeCC
Q psy5514          88 WPQLILCVYGLDGFGNDVIRGYGLCHLPI  116 (124)
Q Consensus        88 WP~L~l~V~~~D~~gR~~~~GYG~~~lP~  116 (124)
                       ..|.|+||..|..+++.-.--|.+.||.
T Consensus        83 -~~L~i~v~d~~~~~~~~~~~iG~~~i~l  110 (125)
T d2bwqa1          83 -RMLEITLWDQARVREEESEFLGEILIEL  110 (125)
T ss_dssp             -CEEEEEEEEC-------CEEEEEEEEEG
T ss_pred             -CEEEEEEEECCCCCCCCCeeEEEEEEEc
Confidence             4799999999987666544466777764