Psyllid ID: psy555

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
Protein Sequence
LTTIIVVAYCWSKGTFQSYASSINKRNQGKVSNLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKKPPE
Secondary Structure (PSIPRED)
cccHHHHHHHHHHcccccccccccccccccccccccEEEEEEEcccccEEEEEEcccccccccccccEEEEEcccEEEEEEcccccHHHHHHHHHHHHHHHHHcccccccccccEEEEccccccHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEHHHHHHHHcccccccccccccccccccccccEEEEEEEccccccEEEEccccccHHHcccccEEEEEccccEEEEEcccccHHHHHcHHHHHHHHHHHcccccccccccEEEEccccccHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
LTTIIVVAYCWSKGTFQSYASSInkrnqgkvsnLARLFGfrcsnekgyftvsekctdfcqddladddmmilDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLrakeperprKLFLTlkgkesrrftkcfhawsfhkkppe
Flexible Loop (DISEMBL)
LTTIIVVAYCWSKGTFQSYAssinkrnqgkvSNLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQhlrakeperprklfltlkgkesrrftkcfhawsfhkkppe
Low Complexity Region (SEG)
LTTIIVVAYCWSKGTFQSYASSINKRNQGKVSNLARLFGFRCSNEKGYFTVSEKCTDFCQddladddmmildNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKKPPE
Disordered region (IsUnstruct)
**TIIVVAYCWSKGTFQSYASSINKRNQGKVSNLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAK*****RKLFLTLKGKESRRFTKCFHAWSF******
Disordered Region (DISOPRED)
*TTIIVVAYCWSKGTFQSY************SNLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLR*****RPRKLFLTLKGKESRRFTKCFHAWSFH*****
Disordered Region (DISEMBL)
LTTIIVVAYCWSKGTFQSYASSINKRNQGKVSNLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAW********
Disordered Region (DISPRO)
LTTIIVVAYCWSKGTFQSYASSINKRNQGKVSNLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFH*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LTTIIVVAYCWSKGTFQSYASSINKRNQGKVSNLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKKPPE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	142	2.2.26 [Sep-21-2011]
Q24020	1256	Protein flightless-1 OS=D	yes	N/A	0.732	0.082	0.792	1e-46
Q9JJ28	1271	Protein flightless-1 homo	yes	N/A	0.718	0.080	0.647	4e-38
Q13045	1269	Protein flightless-1 homo	yes	N/A	0.676	0.075	0.666	4e-37
P34268	1257	Protein flightless-1 homo	yes	N/A	0.661	0.074	0.613	2e-26
P36418	959	Protovillin OS=Dictyostel	yes	N/A	0.676	0.100	0.444	4e-16
Q5ZIV9	717	Adseverin OS=Gallus gallu	no	N/A	0.704	0.139	0.407	1e-14
Q9Y6U3	715	Adseverin OS=Homo sapiens	no	N/A	0.704	0.139	0.398	2e-14
Q60604	715	Adseverin OS=Mus musculus	no	N/A	0.676	0.134	0.404	2e-14
Q9WU06	829	Advillin OS=Rattus norveg	no	N/A	0.669	0.114	0.404	3e-14
O88398	819	Advillin OS=Mus musculus	no	N/A	0.669	0.115	0.404	5e-14

>sp|Q24020|FLII_DROME Protein flightless-1 OS=Drosophila melanogaster GN=fliI PE=2 SV=1

 Score =  184 bits (468), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 84/106 (79%), Positives = 93/106 (87%), Gaps = 2/106 (1%)

Query: 33   NLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKL 92
            N  RLF  RCSNE+GY+TV+EKC DFCQDDLADDD+MILDNGE VFLW+G +CSEVEVKL
Sbjct: 1150 NYTRLF--RCSNERGYYTVAEKCADFCQDDLADDDIMILDNGEHVFLWMGPRCSEVEVKL 1207

Query: 93   AYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHK 138
            AYKSA VYIQH+R K+PERPRKLFLT+K KESRRFTKCFH WS  K
Sbjct: 1208 AYKSAQVYIQHMRIKQPERPRKLFLTMKNKESRRFTKCFHGWSAFK 1253

May play a key role in embryonic cellularization by interacting with both the cytoskeleton and other cellular components. Alternatively, it may play a structural role in indirect flight muscle. Vital for embryonic development.
Drosophila melanogaster (taxid: 7227)

>sp|Q9JJ28|FLII_MOUSE Protein flightless-1 homolog OS=Mus musculus GN=Flii PE=1 SV=1

 Score =  156 bits (394), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 86/102 (84%)

Query: 40   FRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALV 99
            FRCSNEKGYF V+EKC+DFCQDDLADDD+M+LDNG++V++W+G++ S+VE+KL+ K+  V
Sbjct: 1169 FRCSNEKGYFAVTEKCSDFCQDDLADDDIMLLDNGQEVYMWVGTQTSQVEIKLSLKACQV 1228

Query: 100  YIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKKPP 141
            YIQH R+KE ERPR+L L  KG E R FT+CFHAWS  ++ P
Sbjct: 1229 YIQHTRSKEHERPRRLRLVRKGNEQRAFTRCFHAWSTFRQAP 1270

May play a role as coactivator in transcriptional activation by hormone-activated nuclear receptors (NR) and acts in cooperation with NCOA2 and CARM1. Involved in estrogen hormone signaling (By similarity). Essential for early embryonic development. May play a role in regulation of cytoskeletal rearrangements involved in cytokinesis and cell migration.

Mus musculus (taxid: 10090)

>sp|Q13045|FLII_HUMAN Protein flightless-1 homolog OS=Homo sapiens GN=FLII PE=1 SV=2

 Score =  153 bits (386), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 64/96 (66%), Positives = 83/96 (86%)

Query: 40   FRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALV 99
            FRCSNEKGYF V+EKC+DFCQDDLADDD+M+LDNG++V++W+G++ S+VE+KL+ K+  V
Sbjct: 1167 FRCSNEKGYFAVTEKCSDFCQDDLADDDIMLLDNGQEVYMWVGTQTSQVEIKLSLKACQV 1226

Query: 100  YIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWS 135
            YIQH+R+KE ERPR+L L  KG E   FT+CFHAWS
Sbjct: 1227 YIQHMRSKEHERPRRLRLVRKGNEQHAFTRCFHAWS 1262

May play a role as coactivator in transcriptional activation by hormone-activated nuclear receptors (NR) and acts in cooperation with NCOA2 and CARM1. Involved in estrogen hormone signaling. Involved in early embryonic development (By similarity). May play a role in regulation of cytoskeletal rearrangements involved in cytokinesis and cell migration.

Homo sapiens (taxid: 9606)

>sp|P34268|FLII_CAEEL Protein flightless-1 homolog OS=Caenorhabditis elegans GN=fli-1 PE=2 SV=2

 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 62/101 (61%), Positives = 80/101 (79%)

Query: 40   FRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALV 99
            FRC+NEKGYF +SEK  DFCQDDL DDD+MILDNG+ VFLW+G++ S++E KL+Y++A V
Sbjct: 1155 FRCTNEKGYFAISEKTVDFCQDDLDDDDIMILDNGDAVFLWIGARSSDIEAKLSYQAAQV 1214

Query: 100  YIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKKP 140
            Y   +R K  E+PRK  L ++G+ES RF KCFHAWS  K+P
Sbjct: 1215 YHASMRMKANEKPRKFMLAVRGRESCRFRKCFHAWSKMKEP 1255

May play a key role in embryonic cellularization by interacting with both the cytoskeleton and other cellular components.

Caenorhabditis elegans (taxid: 6239)

>sp|P36418|VILB_DICDI Protovillin OS=Dictyostelium discoideum GN=vilB PE=1 SV=1

 Score = 83.6 bits (205), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/99 (44%), Positives = 58/99 (58%), Gaps = 3/99 (3%)

Query: 40  FRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALV 99
           F+CSN  G F V E   DF QDDL  DD+MILDN +Q+F+W+G + S+ E  +A ++AL 
Sbjct: 704 FQCSNNSGVFKVFE-IHDFSQDDLDSDDVMILDNQKQIFVWVGKESSDTEKLMANETALE 762

Query: 100 YIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHK 138
           YI  + A    R   +F    G E   FT  FHAW  +K
Sbjct: 763 YI--MNAPTHRRDDPIFTIQDGFEPHEFTFNFHAWQVNK 799

Caps actin filaments but displays neither severing nor cross-linking nor nucleating activities. Protovillin seems to be a villin precursor with only archaic capping activity. It lacks essential changes in the sequence to allow bundling of actin filaments and consequently the appearance of microvilli.

Dictyostelium discoideum (taxid: 44689)

>sp|Q5ZIV9|ADSV_CHICK Adseverin OS=Gallus gallus GN=SCIN PE=2 SV=2

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 62/103 (60%), Gaps = 3/103 (2%)

Query: 36  RLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYK 95
           RLFG  CSN+ G F + E   +F QDDLA+DD+M+LD  EQVF+W+G + +E E + + K
Sbjct: 615 RLFG--CSNKTGRFIIEEVPGEFTQDDLAEDDVMLLDAWEQVFVWIGKEANETERQESVK 672

Query: 96  SALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHK 138
           SA  YI+   +   ++   + +  +G E   FT  F AW  +K
Sbjct: 673 SAKRYIETDPSGR-DKGTPIVIVKQGHEPPTFTGWFLAWDSNK 714

Ca(2+)-dependent actin filament-severing protein that is presumed to have a regulatory function in exocytosis by affecting the organization of the microfilament network underneath the plasma membrane. In vitro, also has barbed end capping and nucleating activities in the presence of Ca(2+). Regulates chondrocyte proliferation and differentiation. MAP kinases p38 and ERK1/2 mediate the adseverin-induced accelerated differentiation of non-hypertrophic chondrocytes.

Gallus gallus (taxid: 9031)

>sp|Q9Y6U3|ADSV_HUMAN Adseverin OS=Homo sapiens GN=SCIN PE=1 SV=4

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 61/103 (59%), Gaps = 3/103 (2%)

Query: 36  RLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYK 95
           RL+G  CSN+ G F + E   +F QDDLA+DD+M+LD  EQ+F+W+G   +EVE K + K
Sbjct: 615 RLYG--CSNKTGRFVIEEIPGEFTQDDLAEDDVMLLDAWEQIFIWIGKDANEVEKKESLK 672

Query: 96  SALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHK 138
           SA +Y++   +   +R   + +  +G E   FT  F  W   K
Sbjct: 673 SAKMYLETDPSGRDKR-TPIVIIKQGHEPPTFTGWFLGWDSSK 714

Ca(2+)-dependent actin filament-severing protein that is presumed to have a regulatory function in exocytosis by affecting the organization of the microfilament network underneath the plasma membrane. In vitro, also has barbed end capping and nucleating activities in the presence of Ca(2+). Regulates chondrocyte proliferation and differentiation. MAP kinases p38 and ERK1/2 mediate the adseverin-induced accelerated differentiation of non-hypertrophic chondrocytes.

Homo sapiens (taxid: 9606)

>sp|Q60604|ADSV_MOUSE Adseverin OS=Mus musculus GN=Scin PE=1 SV=3

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 60/99 (60%), Gaps = 3/99 (3%)

Query: 36  RLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYK 95
           RL+G  CSN+ G F + E   +F QDDLA+DD+M+LD  EQ+F+W+G   +EVE K + K
Sbjct: 615 RLYG--CSNKTGRFIIEEVPGEFTQDDLAEDDVMLLDAWEQIFIWIGKDANEVEKKESVK 672

Query: 96  SALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAW 134
           SA +Y++   +   +R   + +  +G E   FT  F  W
Sbjct: 673 SAKMYLETDPSGRDKR-TPIVIIKQGHEPPTFTGWFLGW 710

Ca(2+)-dependent actin filament-severing protein that is presumed to have a regulatory function in exocytosis by affecting the organization of the microfilament network underneath the plasma membrane. In vitro, also has barbed end capping and nucleating activities in the presence of Ca(2+). Regulates chondrocyte proliferation and differentiation. MAP kinases p38 and ERK1/2 mediate the adseverin-induced accelerated differentiation of non-hypertrophic chondrocytes (By similarity). Isoform 2 fails to nucleate actin polymerization, although it severs and caps actin filaments in a Ca(2+)-dependent manner.

Mus musculus (taxid: 10090)

>sp|Q9WU06|AVIL_RAT Advillin OS=Rattus norvegicus GN=Avil PE=2 SV=1

 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 4/99 (4%)

Query: 40  FRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALV 99
           F CSN+ G F V+E  TDF QDDL+  D+M+LD  +QVFLW+G++ +  E + A  +A  
Sbjct: 628 FECSNKTGRFLVTE-VTDFTQDDLSPGDVMLLDTWDQVFLWIGAEANATEKEGALSTAQE 686

Query: 100 Y-IQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFH 137
           Y + H   ++P+ P  + +  +G E   FT  F AW  H
Sbjct: 687 YLVTHPSGRDPDTP--ILIIKQGFEPPTFTGWFLAWDPH 723

Ca(2+)-regulated actin-binding protein. May have a unique function in the morphogenesis of neuronal cells which form ganglia. Required for SREC1-mediated regulation of neurite-like outgrowth. Plays a role in regenerative sensory axon outgrowth and remodeling processes after peripheral injury in neonates. Involved in the formation of long fine actin-containing filopodia-like structures in fibroblast. Required for SREC1-mediated regulation of neurite-like outgrowth. Plays a role in ciliogenesis.

Rattus norvegicus (taxid: 10116)

>sp|O88398|AVIL_MOUSE Advillin OS=Mus musculus GN=Avil PE=1 SV=2

 Score = 76.6 bits (187), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 4/99 (4%)

Query: 40  FRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALV 99
           F CSN+ G F V+E  TDF Q+DL+  D+M+LD  +QVFLW+G++ +  E K A  +A  
Sbjct: 619 FECSNKTGRFLVTE-VTDFTQEDLSPGDVMLLDTWDQVFLWIGAEANATEKKGALSTAQE 677

Query: 100 Y-IQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFH 137
           Y + H   ++P+ P  + +  +G E   FT  F AW  H
Sbjct: 678 YLVTHPSGRDPDTP--ILIIKQGFEPPTFTGWFLAWDPH 714

Ca(2+)-regulated actin-binding protein. May have a unique function in the morphogenesis of neuronal cells which form ganglia. Required for SREC1-mediated regulation of neurite-like outgrowth. Plays a role in regenerative sensory axon outgrowth and remodeling processes after peripheral injury in neonates. Involved in the formation of long fine actin-containing filopodia-like structures in fibroblast. Plays a role in ciliogenesis.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
242003646	1237	flightless-I, putative [Pediculus humanu	0.725	0.083	0.873	7e-51
340714520	1239	PREDICTED: protein flightless-1-like iso	0.760	0.087	0.836	1e-50
340714522	1248	PREDICTED: protein flightless-1-like iso	0.760	0.086	0.836	1e-50
350411026	1239	PREDICTED: protein flightless-1-like [Bo	0.760	0.087	0.836	1e-50
158287296	1292	AGAP011292-PA [Anopheles gambiae str. PE	0.760	0.083	0.836	2e-50
307204876	1256	Protein flightless-1 [Harpegnathos salta	0.760	0.085	0.827	2e-50
332025894	1241	Protein flightless-1 [Acromyrmex echinat	0.760	0.087	0.818	2e-50
307189820	1241	Protein flightless-1 [Camponotus florida	0.760	0.087	0.818	3e-50
157138442	1260	flightless-I, putative [Aedes aegypti] g	0.760	0.085	0.827	4e-50
170030140	1258	flightless-1 [Culex quinquefasciatus] gi	0.760	0.085	0.827	9e-50

>gi|242003646|ref|XP_002422811.1| flightless-I, putative [Pediculus humanus corporis] gi|212505669|gb|EEB10073.1| flightless-I, putative [Pediculus humanus corporis]

 Score =  204 bits (520), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 90/103 (87%), Positives = 98/103 (95%)

Query: 40   FRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALV 99
            FRCSNEKGYFTVSEKCTDFCQDDLADDD+MILDNGEQVFLWLG+KCSEVE+KLAYKSA V
Sbjct: 1135 FRCSNEKGYFTVSEKCTDFCQDDLADDDIMILDNGEQVFLWLGAKCSEVEIKLAYKSAQV 1194

Query: 100  YIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKKPPE 142
            YIQH+RAK+PE+PRKLFLTLK KE++RFTKCFH W  HKKPPE
Sbjct: 1195 YIQHMRAKQPEKPRKLFLTLKNKETKRFTKCFHGWGLHKKPPE 1237

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714520|ref|XP_003395775.1| PREDICTED: protein flightless-1-like isoform 1 [Bombus terrestris]

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 92/110 (83%), Positives = 101/110 (91%), Gaps = 2/110 (1%)

Query: 33   NLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKL 92
            N  RLF  RCSNEKGYFT+SEKCTDFCQDDLADDD+MILDNGEQVFLWLGS+CSEVE+KL
Sbjct: 1132 NYTRLF--RCSNEKGYFTISEKCTDFCQDDLADDDIMILDNGEQVFLWLGSRCSEVEIKL 1189

Query: 93   AYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKKPPE 142
            AYKSA VYIQHLR K+P+RPRKL+LT KGKESRRFTKCFH WS HK+PP+
Sbjct: 1190 AYKSAQVYIQHLRVKQPDRPRKLYLTAKGKESRRFTKCFHGWSSHKRPPQ 1239

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714522|ref|XP_003395776.1| PREDICTED: protein flightless-1-like isoform 2 [Bombus terrestris]

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 92/110 (83%), Positives = 101/110 (91%), Gaps = 2/110 (1%)

Query: 33   NLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKL 92
            N  RLF  RCSNEKGYFT+SEKCTDFCQDDLADDD+MILDNGEQVFLWLGS+CSEVE+KL
Sbjct: 1141 NYTRLF--RCSNEKGYFTISEKCTDFCQDDLADDDIMILDNGEQVFLWLGSRCSEVEIKL 1198

Query: 93   AYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKKPPE 142
            AYKSA VYIQHLR K+P+RPRKL+LT KGKESRRFTKCFH WS HK+PP+
Sbjct: 1199 AYKSAQVYIQHLRVKQPDRPRKLYLTAKGKESRRFTKCFHGWSSHKRPPQ 1248

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350411026|ref|XP_003489215.1| PREDICTED: protein flightless-1-like [Bombus impatiens]

 Score =  203 bits (517), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 92/110 (83%), Positives = 101/110 (91%), Gaps = 2/110 (1%)

Query: 33   NLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKL 92
            N  RLF  RCSNEKGYFT+SEKCTDFCQDDLADDD+MILDNGEQVFLWLGS+CSEVE+KL
Sbjct: 1132 NYTRLF--RCSNEKGYFTISEKCTDFCQDDLADDDIMILDNGEQVFLWLGSRCSEVEIKL 1189

Query: 93   AYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKKPPE 142
            AYKSA VYIQHLR K+P+RPRKL+LT KGKESRRFTKCFH WS HK+PP+
Sbjct: 1190 AYKSAQVYIQHLRVKQPDRPRKLYLTAKGKESRRFTKCFHGWSSHKRPPQ 1239

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158287296|ref|XP_309356.4| AGAP011292-PA [Anopheles gambiae str. PEST] gi|157019583|gb|EAA05158.4| AGAP011292-PA [Anopheles gambiae str. PEST]

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 92/110 (83%), Positives = 101/110 (91%), Gaps = 2/110 (1%)

Query: 33   NLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKL 92
            N  RLF  RCSNEKGYFTV+EKC+DFCQDDLADDD+MILDNG+QVFLWLGS+CSEVE+KL
Sbjct: 1185 NFTRLF--RCSNEKGYFTVAEKCSDFCQDDLADDDIMILDNGDQVFLWLGSRCSEVEIKL 1242

Query: 93   AYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKKPPE 142
            AYKSA VYIQH+R K+PERPRKLFLTLK KES+RFTKCFH WS HKKPPE
Sbjct: 1243 AYKSAQVYIQHMRIKQPERPRKLFLTLKNKESKRFTKCFHGWSAHKKPPE 1292

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307204876|gb|EFN83431.1| Protein flightless-1 [Harpegnathos saltator]

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 91/110 (82%), Positives = 100/110 (90%), Gaps = 2/110 (1%)

Query: 33   NLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKL 92
            N  RLF  RCSNEKGYFT+SEKCTDFCQDDLADDD+MILDNGEQVFLWLG++CSEVE+KL
Sbjct: 1149 NYTRLF--RCSNEKGYFTISEKCTDFCQDDLADDDIMILDNGEQVFLWLGTRCSEVEIKL 1206

Query: 93   AYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKKPPE 142
            AYKSA VYIQHLR K+PE+PRKLFLT KGKESRRFTKCFH W  HK+PP+
Sbjct: 1207 AYKSAQVYIQHLRVKQPEKPRKLFLTAKGKESRRFTKCFHGWGSHKRPPQ 1256

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025894|gb|EGI66050.1| Protein flightless-1 [Acromyrmex echinatior]

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 90/110 (81%), Positives = 100/110 (90%), Gaps = 2/110 (1%)

Query: 33   NLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKL 92
            N  RLF  RCSNEKGYFT+SEKCTDFCQDDLADDD+MILDNGEQVFLWLG++CSEVE+KL
Sbjct: 1134 NYTRLF--RCSNEKGYFTISEKCTDFCQDDLADDDIMILDNGEQVFLWLGTRCSEVEIKL 1191

Query: 93   AYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKKPPE 142
            AYKSA VYIQHLR K+P++PRKLFLT KGKESRRFTKCFH W  HK+PP+
Sbjct: 1192 AYKSAQVYIQHLRVKQPDKPRKLFLTAKGKESRRFTKCFHGWGLHKRPPQ 1241

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307189820|gb|EFN74092.1| Protein flightless-1 [Camponotus floridanus]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 90/110 (81%), Positives = 100/110 (90%), Gaps = 2/110 (1%)

Query: 33   NLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKL 92
            N  RLF  RCSNEKGYFT+SEKCTDFCQDDLADDD+MILDNGEQVFLWLG++CSEVE+KL
Sbjct: 1134 NYTRLF--RCSNEKGYFTISEKCTDFCQDDLADDDIMILDNGEQVFLWLGTRCSEVEIKL 1191

Query: 93   AYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKKPPE 142
            AYKSA VYIQHLR K+PE+PRKLFLT KGKES+RFTKCFH W  HK+PP+
Sbjct: 1192 AYKSAQVYIQHLRVKQPEKPRKLFLTAKGKESKRFTKCFHGWGLHKRPPQ 1241

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157138442|ref|XP_001657298.1| flightless-I, putative [Aedes aegypti] gi|108880617|gb|EAT44842.1| AAEL003855-PA [Aedes aegypti]

 Score =  202 bits (514), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 91/110 (82%), Positives = 101/110 (91%), Gaps = 2/110 (1%)

Query: 33   NLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKL 92
            N  RLF  RCSNEKGYFTV+EKC+DFCQDDLADDD+MILDNG+QVFLWLGS+CSEVE+KL
Sbjct: 1153 NYTRLF--RCSNEKGYFTVAEKCSDFCQDDLADDDIMILDNGDQVFLWLGSRCSEVEIKL 1210

Query: 93   AYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKKPPE 142
            AYKSA VYIQH+R K+PERPRKLFLTLK KES+RFTKCFH WS HK+PPE
Sbjct: 1211 AYKSAQVYIQHMRIKQPERPRKLFLTLKNKESKRFTKCFHGWSAHKRPPE 1260

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170030140|ref|XP_001842948.1| flightless-1 [Culex quinquefasciatus] gi|167865954|gb|EDS29337.1| flightless-1 [Culex quinquefasciatus]

 Score =  201 bits (511), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 91/110 (82%), Positives = 100/110 (90%), Gaps = 2/110 (1%)

Query: 33   NLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKL 92
            N  RLF  RCSNEKGYFTV+EKC+DFCQDDLADDD+MILDNGEQVFLWLGS+CSEVE+KL
Sbjct: 1151 NYTRLF--RCSNEKGYFTVAEKCSDFCQDDLADDDIMILDNGEQVFLWLGSRCSEVEIKL 1208

Query: 93   AYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKKPPE 142
            AYKSA VYIQH+R K+PERPRKLFLTLK KES+RF KCFH WS HK+PPE
Sbjct: 1209 AYKSAQVYIQHMRIKQPERPRKLFLTLKNKESKRFIKCFHGWSAHKRPPE 1258

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
FB|FBgn0000709	1256	fliI "flightless I" [Drosophil	0.732	0.082	0.688	2.8e-35
RGD|1307590	1270	Flii "flightless I homolog (Dr	0.718	0.080	0.549	1.1e-27
MGI|MGI:1342286	1271	Flii "flightless I homolog (Dr	0.718	0.080	0.549	1.1e-27
ZFIN|ZDB-GENE-071212-3	1260	flii "flightless I homolog (Dr	0.739	0.083	0.551	2.9e-27
UNIPROTKB|F1N365	1268	FLII "Uncharacterized protein"	0.676	0.075	0.572	3.7e-27
UNIPROTKB|K7EQZ7	207	FLII "Protein flightless-1 hom	0.422	0.289	0.5	4.5e-27
UNIPROTKB|J3QLG3	1258	FLII "Protein flightless-1 hom	0.676	0.076	0.562	7.7e-27
UNIPROTKB|Q13045	1269	FLII "Protein flightless-1 hom	0.676	0.075	0.562	7.8e-27
UNIPROTKB|F1PUU4	1273	FLII "Uncharacterized protein"	0.704	0.078	0.54	7.8e-27
UNIPROTKB|J9P2Y3	1278	FLII "Uncharacterized protein"	0.704	0.078	0.54	7.9e-27

FB|FBgn0000709 fliI "flightless I" [Drosophila melanogaster (taxid:7227)]

 Score = 394 (143.8 bits), Expect = 2.8e-35, P = 2.8e-35
 Identities = 73/106 (68%), Positives = 81/106 (76%)

Query:    33 NLARLFGFRCSNEKGYFTVSEKCTDFCQXXXXXXXXXXXXNGEQVFLWLGSKCSEVEVKL 92
             N  RLF  RCSNE+GY+TV+EKC DFCQ            NGE VFLW+G +CSEVEVKL
Sbjct:  1150 NYTRLF--RCSNERGYYTVAEKCADFCQDDLADDDIMILDNGEHVFLWMGPRCSEVEVKL 1207

Query:    93 AYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHK 138
             AYKSA VYIQH+R K+PERPRKLFLT+K KESRRFTKCFH WS  K
Sbjct:  1208 AYKSAQVYIQHMRIKQPERPRKLFLTMKNKESRRFTKCFHGWSAFK 1253

GO:0007629 "flight behavior" evidence=IMP

GO:0010004 "gastrulation involving germ band extension" evidence=IMP

GO:0003779 "actin binding" evidence=ISS;NAS

GO:0005509 "calcium ion binding" evidence=ISS;NAS

GO:0030239 "myofibril assembly" evidence=IMP

GO:0007527 "adult somatic muscle development" evidence=IMP

RGD|1307590 Flii "flightless I homolog (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 323 (118.8 bits), Expect = 1.1e-27, P = 1.1e-27
 Identities = 56/102 (54%), Positives = 74/102 (72%)

Query:    40 FRCSNEKGYFTVSEKCTDFCQXXXXXXXXXXXXNGEQVFLWLGSKCSEVEVKLAYKSALV 99
             FRCSNEKGYF V+EKC+DFCQ            NG++V++W+G++ S+VE+KL+ K+  V
Sbjct:  1168 FRCSNEKGYFAVTEKCSDFCQDDLADDDIMLLDNGQEVYMWVGTQTSQVEIKLSLKACQV 1227

Query:   100 YIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKKPP 141
             YIQH R+KE ERPR+L L  KG E R FT+CFHAWS  ++ P
Sbjct:  1228 YIQHTRSKEHERPRRLRLVRKGNEQRAFTRCFHAWSTFRQAP 1269

GO:0003779 "actin binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005813 "centrosome" evidence=IEA;ISO

GO:0007275 "multicellular organismal development" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

MGI|MGI:1342286 Flii "flightless I homolog (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 323 (118.8 bits), Expect = 1.1e-27, P = 1.1e-27
 Identities = 56/102 (54%), Positives = 74/102 (72%)

Query:    40 FRCSNEKGYFTVSEKCTDFCQXXXXXXXXXXXXNGEQVFLWLGSKCSEVEVKLAYKSALV 99
             FRCSNEKGYF V+EKC+DFCQ            NG++V++W+G++ S+VE+KL+ K+  V
Sbjct:  1169 FRCSNEKGYFAVTEKCSDFCQDDLADDDIMLLDNGQEVYMWVGTQTSQVEIKLSLKACQV 1228

Query:   100 YIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKKPP 141
             YIQH R+KE ERPR+L L  KG E R FT+CFHAWS  ++ P
Sbjct:  1229 YIQHTRSKEHERPRRLRLVRKGNEQRAFTRCFHAWSTFRQAP 1270

GO:0003779 "actin binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0030036 "actin cytoskeleton organization" evidence=TAS

GO:0030054 "cell junction" evidence=IEA

GO:0051014 "actin filament severing" evidence=TAS

ZFIN|ZDB-GENE-071212-3 flii "flightless I homolog (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 319 (117.4 bits), Expect = 2.9e-27, P = 2.9e-27
 Identities = 59/107 (55%), Positives = 75/107 (70%)

Query:    35 ARLFGFRCSNEKGYFTVSEKCTDFCQXXXXXXXXXXXXNGEQVFLWLGSKCSEVEVKLAY 94
             ARLF  RCSNEKGYF VSEKC+DFCQ            NG++V++W+G++ S+VE+KL+ 
Sbjct:  1155 ARLF--RCSNEKGYFAVSEKCSDFCQDDLADDDIMLLDNGKEVYMWVGTQTSQVEIKLSL 1212

Query:    95 KSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKKPP 141
             K+  VYIQH+R+K+ E PRKL L  KG E   FT+CFHAWS  K  P
Sbjct:  1213 KACQVYIQHMRSKDTENPRKLRLVRKGNEPHCFTRCFHAWSAFKTAP 1259

GO:0003779 "actin binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0045214 "sarcomere organization" evidence=IMP

UNIPROTKB|F1N365 FLII "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 318 (117.0 bits), Expect = 3.7e-27, P = 3.7e-27
 Identities = 55/96 (57%), Positives = 71/96 (73%)

Query:    40 FRCSNEKGYFTVSEKCTDFCQXXXXXXXXXXXXNGEQVFLWLGSKCSEVEVKLAYKSALV 99
             FRCSNEKGYF V+EKC+DFCQ            NG++V++W+GS+ S+VE+KL+ K+  V
Sbjct:  1166 FRCSNEKGYFAVTEKCSDFCQDDLADDDIMLLDNGQEVYMWVGSQTSQVEIKLSLKACQV 1225

Query:   100 YIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWS 135
             YIQH+R+KE ERPR+L L  KG E   FT+CFHAWS
Sbjct:  1226 YIQHMRSKEHERPRRLRLVRKGNEQHAFTRCFHAWS 1261

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|K7EQZ7 FLII "Protein flightless-1 homolog" [Homo sapiens (taxid:9606)]

 Score = 178 (67.7 bits), Expect = 4.5e-27, Sum P(2) = 4.5e-27
 Identities = 30/60 (50%), Positives = 43/60 (71%)

Query:    40 FRCSNEKGYFTVSEKCTDFCQXXXXXXXXXXXXNGEQVFLWLGSKCSEVEVKLAYKSALV 99
             FRCSNEKGYF V+EKC+DFCQ            NG++V++W+G++ S+VE+KL+ K+  V
Sbjct:    78 FRCSNEKGYFAVTEKCSDFCQDDLADDDIMLLDNGQEVYMWVGTQTSQVEIKLSLKACQV 137

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|J3QLG3 FLII "Protein flightless-1 homolog" [Homo sapiens (taxid:9606)]

 Score = 315 (115.9 bits), Expect = 7.7e-27, P = 7.7e-27
 Identities = 54/96 (56%), Positives = 71/96 (73%)

Query:    40 FRCSNEKGYFTVSEKCTDFCQXXXXXXXXXXXXNGEQVFLWLGSKCSEVEVKLAYKSALV 99
             FRCSNEKGYF V+EKC+DFCQ            NG++V++W+G++ S+VE+KL+ K+  V
Sbjct:  1156 FRCSNEKGYFAVTEKCSDFCQDDLADDDIMLLDNGQEVYMWVGTQTSQVEIKLSLKACQV 1215

Query:   100 YIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWS 135
             YIQH+R+KE ERPR+L L  KG E   FT+CFHAWS
Sbjct:  1216 YIQHMRSKEHERPRRLRLVRKGNEQHAFTRCFHAWS 1251

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|Q13045 FLII "Protein flightless-1 homolog" [Homo sapiens (taxid:9606)]

 Score = 315 (115.9 bits), Expect = 7.8e-27, P = 7.8e-27
 Identities = 54/96 (56%), Positives = 71/96 (73%)

Query:    40 FRCSNEKGYFTVSEKCTDFCQXXXXXXXXXXXXNGEQVFLWLGSKCSEVEVKLAYKSALV 99
             FRCSNEKGYF V+EKC+DFCQ            NG++V++W+G++ S+VE+KL+ K+  V
Sbjct:  1167 FRCSNEKGYFAVTEKCSDFCQDDLADDDIMLLDNGQEVYMWVGTQTSQVEIKLSLKACQV 1226

Query:   100 YIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWS 135
             YIQH+R+KE ERPR+L L  KG E   FT+CFHAWS
Sbjct:  1227 YIQHMRSKEHERPRRLRLVRKGNEQHAFTRCFHAWS 1262

GO:0003779 "actin binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006936 "muscle contraction" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

UNIPROTKB|F1PUU4 FLII "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 315 (115.9 bits), Expect = 7.8e-27, P = 7.8e-27
 Identities = 54/100 (54%), Positives = 73/100 (73%)

Query:    40 FRCSNEKGYFTVSEKCTDFCQXXXXXXXXXXXXNGEQVFLWLGSKCSEVEVKLAYKSALV 99
             FRCSNEKGYF V+EKC+DFCQ            NG++V++W+G++ S+VE+KL+ K+  V
Sbjct:  1171 FRCSNEKGYFAVTEKCSDFCQDDLADDDIMLLDNGQEVYMWVGTQTSQVEIKLSLKACQV 1230

Query:   100 YIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKK 139
             YIQH+R+KE E+PR+L L  KG E   FT+CFHAWS  +K
Sbjct:  1231 YIQHMRSKEHEQPRRLRLVRKGNEQHAFTRCFHAWSTFRK 1270

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|J9P2Y3 FLII "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 315 (115.9 bits), Expect = 7.9e-27, P = 7.9e-27
 Identities = 54/100 (54%), Positives = 73/100 (73%)

Query:    40 FRCSNEKGYFTVSEKCTDFCQXXXXXXXXXXXXNGEQVFLWLGSKCSEVEVKLAYKSALV 99
             FRCSNEKGYF V+EKC+DFCQ            NG++V++W+G++ S+VE+KL+ K+  V
Sbjct:  1176 FRCSNEKGYFAVTEKCSDFCQDDLADDDIMLLDNGQEVYMWVGTQTSQVEIKLSLKACQV 1235

Query:   100 YIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKK 139
             YIQH+R+KE E+PR+L L  KG E   FT+CFHAWS  +K
Sbjct:  1236 YIQHMRSKEHEQPRRLRLVRKGNEQHAFTRCFHAWSTFRK 1275

GO:0003779 "actin binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9JJ28	FLII_MOUSE	No assigned EC number	0.6470	0.7183	0.0802	yes	N/A
Q24020	FLII_DROME	No assigned EC number	0.7924	0.7323	0.0828	yes	N/A
P34268	FLII_CAEEL	No assigned EC number	0.6138	0.6619	0.0747	yes	N/A
Q13045	FLII_HUMAN	No assigned EC number	0.6666	0.6760	0.0756	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	142
cd11291	99	cd11291, gelsolin_S6_like, Gelsolin sub-domain 6-l	3e-45
smart00262	90	smart00262, GEL, Gelsolin homology domain	4e-22
pfam00626	76	pfam00626, Gelsolin, Gelsolin repeat	3e-11
cd11292	98	cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-l	4e-08
cd11280	88	cd11280, gelsolin_like, Tandemly repeated domains	8e-06
cd11289	92	cd11289, gelsolin_S2_like, Gelsolin sub-domain 2-l	0.003

>gnl|CDD|200447 cd11291, gelsolin_S6_like, Gelsolin sub-domain 6-like domain found in gelsolin, severin, villin, and related proteins

 Score =  142 bits (360), Expect = 3e-45
 Identities = 44/96 (45%), Positives = 60/96 (62%), Gaps = 1/96 (1%)

Query: 40  FRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALV 99
           FRCSNE G+F V E+ +DF QDDL  DD+M+LD G++VF+W+GS+ S+ E K A  SA  
Sbjct: 5   FRCSNESGFFKV-EEISDFSQDDLDTDDIMLLDTGDEVFVWVGSESSDEEKKEALTSAKK 63

Query: 100 YIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWS 135
           YI+       +    ++L  +G E   FT  FHAW 
Sbjct: 64  YIETDPLGRSKPRTPIYLVKQGNEPPTFTGYFHAWD 99

Gelsolin repeats occur in gelsolin, severin, villin, advillin, villidin, supervillin, flightless, quail, fragmin, and other proteins, usually in several copies. They co-occur with villin headpiece domains, leucine-rich repeats, and several other domains. These gelsolin-related actin binding proteins (GRABPs) play regulatory roles in the assembly and disassembly of actin filaments; they are involved in F-actin capping, uncapping, severing, or the nucleation of actin filaments. Severing of actin filaments is Ca2+ dependent. Villins are also linked to generating bundles of F-actin with uniform filament polarity, which is most likely mediated by their extra villin headpiece domain. Many family members have also adopted functions in the nucleus, including the regulation of transcription. Supervillin, gelsolin, and flightless I are involved in intracellular signaling via nuclear hormone receptors. The gelsolin-like domain is distantly related to the actin depolymerizing domains found in cofilin and similar proteins. Length = 99

>gnl|CDD|214590 smart00262, GEL, Gelsolin homology domain

 Score = 83.5 bits (207), Expect = 4e-22
 Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 4/94 (4%)

Query: 41  RCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVY 100
                KG   V      F Q  L   D  ILD G ++++W+G K S+ E K A + A+  
Sbjct: 1   FLVRVKGKRNVRVPEVPFSQGSLNSGDCYILDTGSEIYVWVGKKSSQDEKKKAAELAVEL 60

Query: 101 IQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAW 134
              L       P ++ +  +GKE   F   F  W
Sbjct: 61  DDTLG----PGPVQVRVVDEGKEPPEFWSLFGGW 90

Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains. Length = 90

>gnl|CDD|201354 pfam00626, Gelsolin, Gelsolin repeat

 Score = 55.0 bits (133), Expect = 3e-11
 Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 57  DFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERPRKLF 116
              Q+ L   D  +LD G  +FLW+G   S  E   A   A       R   PE    + 
Sbjct: 9   PLSQESLNSGDCYLLDTGFTIFLWVGKGSSPDEKLFAALLAAQIDLDERFPLPE----VD 64

Query: 117 LTLKGKESRRF 127
             ++GKE  RF
Sbjct: 65  RVVQGKEPARF 75

Length = 76

>gnl|CDD|200448 cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-like domain found in gelsolin, severin, villin, and related proteins

 Score = 47.6 bits (114), Expect = 4e-08
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 51  VSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQ 102
           V+E      Q+ L  +D  ILD G ++F+W+G   S  E K A K+A  +++
Sbjct: 21  VAEGS--LNQEMLDSEDCYILDCGSEIFVWVGKGASLDERKAALKNAEEFLR 70

Gelsolin repeats occur in gelsolin, severin, villin, advillin, villidin, supervillin, flightless, quail, fragmin, and other proteins, usually in several copies. They co-occur with villin headpiece domains, leucine-rich repeats, and several other domains. These gelsolin-related actin binding proteins (GRABPs) play regulatory roles in the assembly and disassembly of actin filaments; they are involved in F-actin capping, uncapping, severing, or the nucleation of actin filaments. Severing of actin filaments is Ca2+ dependent. Villins are also linked to generating bundles of F-actin with uniform filament polarity, which is most likely mediated by their extra villin headpiece domain. Many family members have also adopted functions in the nucleus, including the regulation of transcription. Supervillin, gelsolin, and flightless I are involved in intracellular signaling via nuclear hormone receptors. The gelsolin-like domain is distantly related to the actin depolymerizing domains found in cofilin and similar proteins. Length = 98

>gnl|CDD|200436 cd11280, gelsolin_like, Tandemly repeated domains found in gelsolin, severin, villin, and related proteins

 Score = 41.2 bits (97), Expect = 8e-06
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 59  CQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERPRKLFLT 118
               L  DD+ +LD G ++++W G   S+ E+  A   A    + L  +   +P  +   
Sbjct: 21  ASSSLDSDDVFVLDTGSEIYIWQGRASSQAELAAAALLA----KELDEERKGKPEIV-RI 75

Query: 119 LKGKESRRFTKCF 131
            +G+E R F   F
Sbjct: 76  RQGQEPREFWSLF 88

Gelsolin repeats occur in gelsolin, severin, villin, advillin, villidin, supervillin, flightless, quail, fragmin, and other proteins, usually in several copies. They co-occur with villin headpiece domains, leucine-rich repeats, and several other domains. These gelsolin-related actin binding proteins (GRABPs) play regulatory roles in the assembly and disassembly of actin filaments; they are involved in F-actin capping, uncapping, severing, or the nucleation of actin filaments. Severing of actin filaments is Ca2+ dependent. Villins are also linked to generating bundles of F-actin with uniform filament polarity, which is most likely mediated by their extra villin headpiece domain. Many family members have also adopted functions in the nucleus, including the regulation of transcription. Supervillin, gelsolin, and flightless I are involved in intracellular signaling via nuclear hormone receptors. The gelsolin-like domain is distantly related to the actin depolymerizing domains found in cofilin and similar proteins. Length = 88

>gnl|CDD|200445 cd11289, gelsolin_S2_like, Gelsolin sub-domain 2-like domain found in gelsolin, severin, villin, and related proteins

 Score = 34.5 bits (80), Expect = 0.003
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 63  LADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERPRKLFLT--LK 120
           L   D+ ILD G  ++ W GSK +  E K     A+   Q +R +      K+ +     
Sbjct: 25  LNSGDVFILDLGSTIYQWNGSKSNRFE-KA---KAMQLAQGIRDERRLGRAKVIVLDEGD 80

Query: 121 GKESRRFTKCF 131
             ES  F K  
Sbjct: 81  TNESPEFWKVL 91

Gelsolin repeats occur in gelsolin, severin, villin, advillin, villidin, supervillin, flightless, quail, fragmin, and other proteins, usually in several copies. They co-occur with villin headpiece domains, leucine-rich repeats, and several other domains. These gelsolin-related actin binding proteins (GRABPs) play regulatory roles in the assembly and disassembly of actin filaments; they are involved in F-actin capping, uncapping, severing, or the nucleation of actin filaments. Severing of actin filaments is Ca2+ dependent. Villins are also linked to generating bundles of F-actin with uniform filament polarity, which is most likely mediated by their extra villin headpiece domain. Many family members have also adopted functions in the nucleus, including the regulation of transcription. Supervillin, gelsolin, and flightless I are involved in intracellular signaling via nuclear hormone receptors. The gelsolin-like domain is distantly related to the actin depolymerizing domains found in cofilin and similar proteins. Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	142
KOG0443|consensus	827		99.97
KOG0443|consensus	827		99.93
smart00262	90	GEL Gelsolin homology domain. Gelsolin/severin/vil	99.91
KOG0444|consensus	1255		99.8
PF00626	76	Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gel	99.74
KOG0445|consensus	919		99.52
KOG0444|consensus	1255		99.32
KOG0445|consensus	919		99.24
COG5028	861	Vesicle coat complex COPII, subunit SEC24/subunit	97.38
KOG1984|consensus	1007		97.2
PTZ00395	1560	Sec24-related protein; Provisional	96.49
KOG1985|consensus	887		96.15
PLN00162	761	transport protein sec23; Provisional	93.69

>KOG0443|consensus

Probab=99.97  E-value=2.2e-31  Score=229.17  Aligned_cols=128  Identities=32%  Similarity=0.519  Sum_probs=114.4

Q ss_pred             eccccc-CcccCcccccccccCCCCccCcceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCC
Q psy555            7 VAYCWS-KGTFQSYASSINKRNQGKVSNLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKC   85 (142)
Q Consensus         7 ~~~FW~-lGg~~~~~~~~~~~~~~~~~~~~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a   85 (142)
                      -+.||+ ||||.+|+++.+  .++.-..+|||  |.|+..+|.|+++|| .+|+|+||+++|+|||||+++||||+|+.+
T Consensus       593 p~~FWe~LGGk~~Y~~sk~--~~~~~~~~PrL--F~Cs~~~g~f~~~EI-~~F~QdDL~tdDi~lLDt~~evfvWvG~~a  667 (827)
T KOG0443|consen  593 PDEFWELLGGKAEYPSSKR--LEEKPERDPRL--FSCSNKTGSFVVEEI-YNFTQDDLMTDDIMLLDTWSEVFVWVGQEA  667 (827)
T ss_pred             chhhHHHcCCCCCCCcCcc--ccccCCCCCcE--EEEEecCCcEEEEEe-cCcchhhccccceEEEecCceEEEEecCCC
Confidence            368999 999999999864  22333567899  999999999999999 599999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhh-cCCCCCCCceEEEecCCCCChhhHhhhcCCCCCCCC
Q psy555           86 SEVEVKLAYKSALVYIQHL-RAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKKP  140 (142)
Q Consensus        86 ~~~ek~~a~~~A~~y~~~~-~~~~~~~~~~i~~v~eG~Ep~~Fk~~F~~W~~~~~~  140 (142)
                      +..||..|+.+|+.|++.. +. ++.+.+||.+|.||+||+.|+.+|.+|+.+++.
T Consensus       668 ~~~eK~~Al~~~~~yl~~~~p~-gr~~~TPI~vV~qG~EPp~Ftg~F~~WD~~kwS  722 (827)
T KOG0443|consen  668 NEKEKEEALTIGQKYLETDLPE-GRDPRTPIYVVKQGHEPPFFTGFFLSWDPSKWS  722 (827)
T ss_pred             ChhHHHHHHHHHHHHHhccCcc-cCCCCCceEEecCCCCCChhhccccccCCcccc
Confidence            9999999999999999876 33 444579999999999999999999999999874

>KOG0443|consensus

Probab=99.93  E-value=3.6e-26  Score=197.11  Aligned_cols=127  Identities=24%  Similarity=0.414  Sum_probs=106.7

Q ss_pred             ccccc-CcccCc-ccccccccCCCCc-cCcceeeeeEEEccCCCeEEEEeec-CCccCCCCCCcEEEEecC-CeEEEEeC
Q psy555            8 AYCWS-KGTFQS-YASSINKRNQGKV-SNLARLFGFRCSNEKGYFTVSEKCT-DFCQDDLADDDMMILDNG-EQVFLWLG   82 (142)
Q Consensus         8 ~~FW~-lGg~~~-~~~~~~~~~~~~~-~~~~rL~~f~v~~~~g~l~v~ev~~-~~~q~~L~s~~vfILD~g-~~IyvW~G   82 (142)
                      .+||. +||..+ .+......+++.+ ....+|  |+|++++|.+.+.+++. |+++++|++++||||||| .+||||+|
T Consensus       225 ~~~~~~~~g~~~~~~~~~~~~~~~~~~s~~~kL--YkVsd~~g~l~v~~va~~~l~qdlLd~~dCYILD~g~~~IfVW~G  302 (827)
T KOG0443|consen  225 GEFWGFVLGFAPALPKKSPDDDDEQANSAAAKL--YKVSDASGGLKVPVVADGPLTKDLLDTEDCYILDCGGGEIFVWKG  302 (827)
T ss_pred             HHHHHhhcCcCccCCCCCcchhhhhhhccccEE--EEEeccCCCccccccccchhhHHhhccCCeEEEecCCceEEEEeC
Confidence            36999 887665 4443322222222 237899  99999999999998864 599999999999999999 79999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEecCCCCChhhHhhhcCCCCCCC
Q psy555           83 SKCSEVEVKLAYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKK  139 (142)
Q Consensus        83 ~~a~~~ek~~a~~~A~~y~~~~~~~~~~~~~~i~~v~eG~Ep~~Fk~~F~~W~~~~~  139 (142)
                      +.|+..||+.||..|++|++++.   ++++|.|.+|.||.|+..||++|.+|.+...
T Consensus       303 r~as~~ERkaAm~~AeeFlk~k~---yP~~TqV~rv~EG~Esa~FKq~F~~W~~~~~  356 (827)
T KOG0443|consen  303 RQASLDERKAAMSSAEEFLKKKK---YPPNTQVVRVLEGAESAPFKQLFDSWPDKDQ  356 (827)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhcc---CCCCceEEEecCCCcchhHHHHHhhCccccc
Confidence            99999999999999999999864   4468999999999999999999999998754

>smart00262 GEL Gelsolin homology domain

Probab=99.91  E-value=1.4e-23  Score=139.93  Aligned_cols=88  Identities=31%  Similarity=0.491  Sum_probs=77.3

Q ss_pred             eEEEccCCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEec
Q psy555           40 FRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERPRKLFLTL  119 (142)
Q Consensus        40 f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~~~~~~~~~~~i~~v~  119 (142)
                      ++++.. ..+.+.++  ++.+++|+++||||||++++||||+|++|+..||..|+.+|+.|++..+    .+.++|.++.
T Consensus         3 ~~~~g~-~~~~~~~~--~~~~~~L~s~d~fild~~~~iyvW~G~~as~~ek~~A~~~a~~~~~~~~----~~~~~i~~v~   75 (90)
T smart00262        3 VRVKGK-RNVRVPEV--PFSQGSLNSGDCYILDTGSEIYVWVGKKSSQDEKKKAAELAVELDDTLG----PGPVQVRVVD   75 (90)
T ss_pred             EEEeCC-ceEEEEEc--CCCHHHCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHhcC----CCCceEEEEe
Confidence            556543 35666665  9999999999999999999999999999999999999999999998643    2369999999


Q ss_pred             CCCCChhhHhhhcCC
Q psy555          120 KGKESRRFTKCFHAW  134 (142)
Q Consensus       120 eG~Ep~~Fk~~F~~W  134 (142)
                      ||.||..|+..|.+|
T Consensus        76 eg~E~~~F~~~f~~~   90 (90)
T smart00262       76 EGKEPPEFWSLFGGW   90 (90)
T ss_pred             CCCCCHHHHHHhCCC
Confidence            999999999999998

Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.

>KOG0444|consensus

Probab=99.80  E-value=7.9e-20  Score=156.79  Aligned_cols=127  Identities=20%  Similarity=0.344  Sum_probs=106.7

Q ss_pred             eccccc-CcccCccccc-ccccCCCCcc-CcceeeeeEEEccCCCeEEEEee----cCCccCCCCCCcEEEEecCCeEEE
Q psy555            7 VAYCWS-KGTFQSYASS-INKRNQGKVS-NLARLFGFRCSNEKGYFTVSEKC----TDFCQDDLADDDMMILDNGEQVFL   79 (142)
Q Consensus         7 ~~~FW~-lGg~~~~~~~-~~~~~~~~~~-~~~rL~~f~v~~~~g~l~v~ev~----~~~~q~~L~s~~vfILD~g~~Iyv   79 (142)
                      ..+||+ |||.++.+.. +-...+++|. .+|+|  |+|.-..|.+.+.+|-    ..+.|+.|+|+.||||||.++||+
T Consensus       703 ~pEFWqaLgg~p~e~~~~ikeHVPEdf~p~qpkL--YkV~lGmGyLELPQvel~P~~~l~q~lL~sk~VyiLDc~sDiF~  780 (1255)
T KOG0444|consen  703 PPEFWQALGGNPDEPQGAIKEHVPEDFVPEQPKL--YKVNLGMGYLELPQVELLPKGILKQDLLGSKGVYILDCNSDIFL  780 (1255)
T ss_pred             CHHHHHHhCCCCcccccchhhcCCcccCCCCcce--EEEccccceeecchhhhchhhHHHHHhhcCCeEEEEecCCceEE
Confidence            368999 9998765443 2223345554 48999  9999889999877762    248999999999999999999999


Q ss_pred             EeCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEecCCCCChhhHhhhcCCCCCC
Q psy555           80 WLGSKCSEVEVKLAYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHK  138 (142)
Q Consensus        80 W~G~~a~~~ek~~a~~~A~~y~~~~~~~~~~~~~~i~~v~eG~Ep~~Fk~~F~~W~~~~  138 (142)
                      |+|++++.-.|..|.++.++.+.+.   +|++.+.|.++.||.|...|++.|.+||+..
T Consensus       781 W~GkKs~RLvraAa~KL~~EL~~M~---dRPdyA~V~R~~EG~E~q~FrsKFagWDev~  836 (1255)
T KOG0444|consen  781 WIGKKSNRLVRAAAQKLVVELHQMI---DRPDYAQVYRETEGEESQMFRSKFAGWDEVV  836 (1255)
T ss_pred             EecccchHHHHHHHHHHHHHHHhhh---cCcchhheeeccCccHHHHHHHhhCCcceee
Confidence            9999999999999999999988875   4446799999999999999999999999864

>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []

Probab=99.74  E-value=5.2e-18  Score=109.19  Aligned_cols=68  Identities=29%  Similarity=0.434  Sum_probs=61.1

Q ss_pred             CCccCCCCCCcEEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEecCCCCChhhH
Q psy555           57 DFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFT  128 (142)
Q Consensus        57 ~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~~~~~~~~~~~i~~v~eG~Ep~~Fk  128 (142)
                      ++++++|++++|||||++.+||+|+|++|+..+|..|+..|+++....    +...+.+.++.||.||..|+
T Consensus         9 ~~s~~~L~s~~~yIld~~~~i~vW~G~~~~~~e~~~a~~~a~~~~~~~----~~~~~~~~~~~eg~E~~~F~   76 (76)
T PF00626_consen    9 PLSQSSLNSDDCYILDCGYEIFVWVGKKSSPEEKAFAAQLAQELLSEE----RPPLPEVIRVEEGKEPAEFL   76 (76)
T ss_dssp             SSSGGGEETTSEEEEEESSEEEEEEHTTSHHHHHHHHHHHHHHHHHHH----TTTTSEEEEEETTHHHHHHH
T ss_pred             CCCHHHcCCCCEEEEEeCCCcEEEEeccCCHHHHHHHHHHHHHhhhhc----CCCCCEEEEecCCCCChHHC
Confidence            999999999999999999999999999999999999999999988221    12358899999999999995

It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....

>KOG0445|consensus

Probab=99.52  E-value=8.6e-15  Score=125.46  Aligned_cols=129  Identities=16%  Similarity=0.248  Sum_probs=97.8

Q ss_pred             ccccc-CcccCcccccccccCCCCccC----cceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeC
Q psy555            8 AYCWS-KGTFQSYASSINKRNQGKVSN----LARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLG   82 (142)
Q Consensus         8 ~~FW~-lGg~~~~~~~~~~~~~~~~~~----~~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G   82 (142)
                      .+||. |||..+|.+.....+++.|..    ...+  |++-+++ .+....-...+.-++|++..|.|+|.|++||||.|
T Consensus       311 ~~Fw~llg~qs~~~~~g~a~ede~fE~~iietN~i--yr~~dd~-l~p~~~~w~ipk~~~l~p~eVLvFDFGSEvYVW~G  387 (919)
T KOG0445|consen  311 KDFWKLLGGQSSYQSAGDAKEDELFEAAIIETNCI--YRLMDDK-LVPDDDYWKIPKCSLLQPKEVLVFDFGSEVYVWHG  387 (919)
T ss_pred             HHHHHHhCCccchhhcCCccccchHHHHHHHhhhH--Hhhcccc-cCccccccccccccccCcceEEEEecCceEEEEcC
Confidence            47999 999999988754455555443    4456  8876542 11111111258889999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhh--------------cCCCCCCCceEEEecCCCCChhhHhhhcCCCCCCC
Q psy555           83 SKCSEVEVKLAYKSALVYIQHL--------------RAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKK  139 (142)
Q Consensus        83 ~~a~~~ek~~a~~~A~~y~~~~--------------~~~~~~~~~~i~~v~eG~Ep~~Fk~~F~~W~~~~~  139 (142)
                      +.++...|+.|+++|++..+..              ...+|+.|+-.-.+.||.|+..||+.|.+|++.+.
T Consensus       388 k~~~~~~~~~A~~lAk~l~~~dy~nc~~npld~~~~~~~gRPeW~i~gkitq~~et~LFKeKFsDWpE~~r  458 (919)
T KOG0445|consen  388 KEVTLAQRKIAFQLAKHLWNFDYENCDINPLDLIPRKGQGRPEWAIFGKITQHNETILFKEKFSDWPELKR  458 (919)
T ss_pred             ccCchHHHHHHHHHHHHHhCCCcccCccccccccccccCCCcceeeechhhcchhhhhHHHhhccchHhhh
Confidence            9999999999999999876532              01123457777889999999999999999998654

>KOG0444|consensus

Probab=99.32  E-value=7.6e-14  Score=120.43  Aligned_cols=125  Identities=54%  Similarity=1.022  Sum_probs=106.6

Q ss_pred             cccc-CcccCcccccccccCCCCccCcceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCCCH
Q psy555            9 YCWS-KGTFQSYASSINKRNQGKVSNLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSE   87 (142)
Q Consensus         9 ~FW~-lGg~~~~~~~~~~~~~~~~~~~~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~   87 (142)
                      .||. +||+++|-...      .+..-.||  |+|+..+|.+.+.|.+.+|.|+||+.++++|||.|..+|.|+|..++.
T Consensus      1129 ~fw~~~g~~k~ye~d~------~~~khtrl--frc~nekgyfa~sek~~DfcqDDl~dddim~ldng~~v~~w~g~~~s~ 1200 (1255)
T KOG0444|consen 1129 EFWKVLGGKKKYETDS------SFVKHTRL--FRCTNEKGYFAISEKTVDFCQDDLDDDDIMILDNGDAVFLWIGARSSD 1200 (1255)
T ss_pred             HHhcccCCCCccchhH------HHHHHHHH--HhccchhhhhhHhHhhhhhhhccchhhhhhhhcccceeeeeecceehh
Confidence            5999 99998886642      33446789  999999999999997779999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCceEEEecCCCCChhhHhhhcCCCCCCCCC
Q psy555           88 VEVKLAYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKKPP  141 (142)
Q Consensus        88 ~ek~~a~~~A~~y~~~~~~~~~~~~~~i~~v~eG~Ep~~Fk~~F~~W~~~~~~~  141 (142)
                      .|-+.+...||.|...++.+.+.+......+..|.|+..|...|+.|..-+.|.
T Consensus      1201 ie~Kls~~a~Qvy~~~mr~k~~e~pr~~~l~~~gre~~~F~~cfhaws~~~~~~ 1254 (1255)
T KOG0444|consen 1201 IEAKLSYQAAQVYHASMRMKANEKPRKFMLAVRGRESCRFRKCFHAWSKMKEPM 1254 (1255)
T ss_pred             HHHHHHHHHHHHHHHhcccccccchHHHHHHHhcchhhhhHHHHHHHHHhhccc
Confidence            999999999999998765544333455667889999999999999998877663

>KOG0445|consensus

Probab=99.24  E-value=7.9e-12  Score=107.54  Aligned_cols=92  Identities=26%  Similarity=0.463  Sum_probs=72.4

Q ss_pred             ccCcceeeeeEEEccC-CCeEEEE-eecCCccCCCCCCcEEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy555           31 VSNLARLFGFRCSNEK-GYFTVSE-KCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKE  108 (142)
Q Consensus        31 ~~~~~rL~~f~v~~~~-g~l~v~e-v~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~~~~~  108 (142)
                      +...+||  |-.+... ..|.-.. ...||+|++|.+.  |++|.|+++|+|.    ...+|+.|+++|.+|++..    
T Consensus       743 f~~~~Rl--F~~sS~qa~els~p~rc~~pFsQ~~Ly~a--fLvD~gdelwLW~----w~s~r~~Aleta~~Ywk~~----  810 (919)
T KOG0445|consen  743 FNFAPRL--FILSSSQATELSYPARCPMPFSQEDLYSA--FLVDNGDELWLWQ----WASDRKSALETALQYWKNL----  810 (919)
T ss_pred             cccccee--eeccchhhhhccCcccCCCcccHHHHhhh--eeeccCCeeEeeh----hhhHHHHHHHHHHHHHhcc----
Confidence            4568899  7665432 1121111 1248999999987  9999999999998    7789999999999999942    


Q ss_pred             CCCCceEEEecCCCCChhhHhhhcCCCCC
Q psy555          109 PERPRKLFLTLKGKESRRFTKCFHAWSFH  137 (142)
Q Consensus       109 ~~~~~~i~~v~eG~Ep~~Fk~~F~~W~~~  137 (142)
                         ..|-.+|..|-||..|+.+|+.|...
T Consensus       811 ---~~p~~vV~aGlEPl~Fk~lFp~We~r  836 (919)
T KOG0445|consen  811 ---KAPSYVVHAGLEPLTFKNLFPSWEHR  836 (919)
T ss_pred             ---CCCceEEEcCcChhhhhhhCCCceec
Confidence               15678999999999999999999764

>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]

Probab=97.38  E-value=0.00045  Score=61.26  Aligned_cols=69  Identities=19%  Similarity=0.376  Sum_probs=50.3

Q ss_pred             CCccCCCCCCcEEEEecCCeEEEEeCCCCCHHHHHHHHHH-----------------------HHHHHHhhcCCCCCCCc
Q psy555           57 DFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKS-----------------------ALVYIQHLRAKEPERPR  113 (142)
Q Consensus        57 ~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~ek~~a~~~-----------------------A~~y~~~~~~~~~~~~~  113 (142)
                      +++.+.|.+..+|+||+|.+||+|+|++|.+.........                       +...+.+.+...+....
T Consensus       737 NaT~s~le~~GlYLidtg~~iflw~g~d~~p~Ll~dlf~~~~~~~I~~~k~~~p~~~n~~n~~v~~iI~~lrs~~~~~tl  816 (861)
T COG5028         737 NATSSLLESGGLYLIDTGQKIFLWFGKDAVPSLLQDLFGVDSLSDIPSGKFTLPPTGNEFNERVRNIIGELRSVNDDSTL  816 (861)
T ss_pred             hhhHHHHhcCCeEEEEcCCEEEEEecCCCCHHHHHHhcCcchhhhccccccccCCcCCHHHHHHHHHHHHHHhhCCCCcc
Confidence            6999999999999999999999999999997655433322                       33444443221222346


Q ss_pred             eEEEecCCCCCh
Q psy555          114 KLFLTLKGKESR  125 (142)
Q Consensus       114 ~i~~v~eG~Ep~  125 (142)
                      ++.+|.+|.+|.
T Consensus       817 ~lvlVR~~~d~s  828 (861)
T COG5028         817 PLVLVRGGGDPS  828 (861)
T ss_pred             ceEEEecCCCcc
Confidence            788999998887

>KOG1984|consensus

Probab=97.20  E-value=0.0021  Score=57.87  Aligned_cols=66  Identities=17%  Similarity=0.428  Sum_probs=48.1

Q ss_pred             CCccCCCCCCcEEEEecCCeEEEEeCCCCCHHHHH--------------------------HHHHHHHHHHHhhcCCCCC
Q psy555           57 DFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVK--------------------------LAYKSALVYIQHLRAKEPE  110 (142)
Q Consensus        57 ~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~ek~--------------------------~a~~~A~~y~~~~~~~~~~  110 (142)
                      +.+.+.|.++.||+||.|.++|+|+|..++..-..                          ..++-+..+++.    .|.
T Consensus       882 raS~e~l~negiYll~nG~~~ylwvg~sv~~~llQ~lf~V~s~~~i~s~~~~Lpe~dn~lS~k~r~~i~~i~~----~r~  957 (1007)
T KOG1984|consen  882 RASSEFLSNEGIYLLDNGQKIYLWVGESVDPDLLQDLFSVSSFEQIDSQSGVLPELDNPLSRKVRNVISLIRR----QRS  957 (1007)
T ss_pred             ecchhhccCCceEEEecCcEEEEEecCCCCHHHHHHHhcCccccccccccccccccCcHHHHHHHHHHHHHHh----ccc
Confidence            79999999999999999999999999998864321                          122222244444    223


Q ss_pred             CCceEEEecCCCCChh
Q psy555          111 RPRKLFLTLKGKESRR  126 (142)
Q Consensus       111 ~~~~i~~v~eG~Ep~~  126 (142)
                      ...++.++++|.++.+
T Consensus       958 ~~l~v~~~k~g~~~~~  973 (1007)
T KOG1984|consen  958 SELPVVLVKQGLDGSE  973 (1007)
T ss_pred             cccccEEEecCCCchh
Confidence            4689999999977664

>PTZ00395 Sec24-related protein; Provisional

Probab=96.49  E-value=0.0031  Score=59.22  Aligned_cols=33  Identities=12%  Similarity=0.302  Sum_probs=30.2

Q ss_pred             CCccCCCCCCcEEEEecCCeEEEEeCCCCCHHH
Q psy555           57 DFCQDDLADDDMMILDNGEQVFLWLGSKCSEVE   89 (142)
Q Consensus        57 ~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~e   89 (142)
                      +++.+.|.++.|||||.|..||+|+|+.+++.-
T Consensus      1435 rLS~ErLesdGIYLLDNGe~IyLWVG~~V~PqL 1467 (1560)
T PTZ00395       1435 PSSAEKIYSNGIYLLDACTHFYLYFGFHSDANF 1467 (1560)
T ss_pred             cchHHHhcCCcEEEEECCCEEEEEECCCCCHHH
Confidence            688899999999999999999999999998653

>KOG1985|consensus

Probab=96.15  E-value=0.0035  Score=56.12  Aligned_cols=31  Identities=26%  Similarity=0.706  Sum_probs=29.0

Q ss_pred             CCccCCCCCCcEEEEecCCeEEEEeCCCCCH
Q psy555           57 DFCQDDLADDDMMILDNGEQVFLWLGSKCSE   87 (142)
Q Consensus        57 ~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~   87 (142)
                      +++.+.|++..+|++|+|..+|+|+|+.|.+
T Consensus       764 ~ltae~l~~~GlyL~D~g~~lfl~vg~~a~P  794 (887)
T KOG1985|consen  764 NLTAELLSRRGLYLMDTGTTLFLWVGSNADP  794 (887)
T ss_pred             chHHHHhccCceEEEecCcEEEEEEcCCCCc
Confidence            6889999999999999999999999999874

>PLN00162 transport protein sec23; Provisional

Probab=93.69  E-value=0.45  Score=43.06  Aligned_cols=44  Identities=23%  Similarity=0.246  Sum_probs=33.3

Q ss_pred             cceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCC
Q psy555           34 LARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSK   84 (142)
Q Consensus        34 ~~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~   84 (142)
                      .|+|  |..+.+ +-  .+.|  .++.++|.++.+|+||++..|+||.|..
T Consensus       620 ~P~L--~sy~~~-~~--P~pv--~Ld~~si~~d~ilLLD~~f~vvi~~G~~  663 (761)
T PLN00162        620 QPTL--ISYSFN-GP--PEPV--LLDVASIAADRILLLDSYFSVVIFHGST  663 (761)
T ss_pred             CCeE--EEecCC-CC--Ccce--ecchhhccCCceEEEeCCCEEEEEecCc
Confidence            6889  666532 21  1123  6888899999999999999999999964

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	142
3fg6_A	371	Structure Of The C-terminus Of Adseverin Length = 3		3e-08
3fg7_A	398	The Crystal Structure Of Villin Domain 6 Length = 3		2e-07
2llf_A	107	Sixth Gelsolin-like Domain Of Villin In 5 Mm Cacl2		7e-06
1nph_A	329	Gelsolin Domains 4-6 In Active, Actin Free Conforma		1e-04
1p8x_A	344	The Calcium-activated C-terminal Half Of Gelsolin L		2e-04
1h1v_G	331	Gelsolin G4-G6ACTIN COMPLEX Length = 331		2e-04

>pdb|3FG6|A Chain A, Structure Of The C-terminus Of Adseverin Length = 371

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Query: 36  RLFGFRCSNEKGYFTVSEKCTDFCQXXXXXXXXXXXXNGEQVFLWLGSKCSEVEVKLAYK 95
           RL+G  CSN+ G F + E   +F Q              EQ+F+W+G   +EVE K + K
Sbjct: 271 RLYG--CSNKTGRFVIEEIPGEFTQDDLAEDDVMLLDAWEQIFIWIGKDANEVEKKESLK 328
Query: 96  SALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHK 138
           SA +Y++   +   +R   + +  +G E   FT  F  W   K
Sbjct: 329 SAKMYLETDPSGRDKR-TPIVIIKQGHEPPTFTGWFLGWDSSK 370

>pdb|3FG7|A Chain A, The Crystal Structure Of Villin Domain 6 Length = 398

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 40  FRCSNEKGYFTVSEKCTDFCQXXXXXXXXXXXXNGEQVFLWLGSKCSEVEVKLAYKSALV 99
           F CSN+ G F  +E   DF Q              +QVF W+G   +E E K A  +A  
Sbjct: 286 FECSNKTGRFLATE-IPDFNQDDLEEDDVFLLDVWDQVFFWIGKHANEEEKKAAATTAQE 344
Query: 100 YIQ-HLRAKEPERPRKLFLTLKGKESRRFTKCFHAWS 135
           Y++ H   ++PE P  + +  +G E   FT  F AW 
Sbjct: 345 YLKTHPSGRDPETP--IIVVKQGHEPPTFTGWFLAWD 379

>pdb|2LLF|A Chain A, Sixth Gelsolin-like Domain Of Villin In 5 Mm Cacl2 Length = 107

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 40  FRCSNEKGYFTVSEKCTDFCQXXXXXXXXXXXXNGEQVFLWLGSKCSEVEVKLAYKSALV 99
           F CSN+ G F  +E   DF Q              +Q+F W+G   +E E + A ++A  
Sbjct: 4   FECSNKTGRFLATE-IVDFTQDDLDENDVYLLDTWDQIFFWIGKGANESEKEAAAETAQE 62
Query: 100 YIQ-HLRAKEPERPRKLFLTLKGKESRRFTKCFHAWS 135
           Y++ H  +++ + P  + +  +G E   FT  F AW 
Sbjct: 63  YLRSHPGSRDLDTP--IIVVKQGFEPPTFTGWFMAWD 97

>pdb|1NPH|A Chain A, Gelsolin Domains 4-6 In Active, Actin Free Conformation Identifies Sites Of Regulatory Calcium Ions Length = 329

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 7/124 (5%)
Query: 14  GTFQSYASSINKRNQGKVSNLARLFGFRCSNEKGYFTVSEKCTDFCQXXXXXXXXXXXXN 73
           G   SY +S   +++   ++  RLF   CSN  G F + E   +  Q             
Sbjct: 206 GGKTSYRTSPRLKDKKMDAHPPRLFA--CSNRIGRFVIEEVPGELMQEDLATDDVMLLDT 263
Query: 74  GEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERPRKLFLTL--KGKESRRFTKCF 131
            +QVF+W+G    E E   A  SA  YI+   A    R R+  +T+  +G E   F   F
Sbjct: 264 WDQVFVWVGKDSQEEEKTEALTSAKRYIETDPAN---RDRRTPITVVRQGFEPPSFVGWF 320
Query: 132 HAWS 135
             W 
Sbjct: 321 LGWD 324

>pdb|1P8X|A Chain A, The Calcium-activated C-terminal Half Of Gelsolin Length = 344

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 7/124 (5%)
Query: 14  GTFQSYASSINKRNQGKVSNLARLFGFRCSNEKGYFTVSEKCTDFCQXXXXXXXXXXXXN 73
           G   +Y +S   +++   ++  RLF   CSN+ G F + E   +  Q             
Sbjct: 208 GGKAAYRTSPRLKDKKMDAHPPRLFA--CSNKIGRFVIEEVPGELMQEDLATDDVMLLDT 265
Query: 74  GEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERPRKLFLTL--KGKESRRFTKCF 131
            +QVF+W+G    E E   A  SA  YI+   A    R R+  +T+  +G E   F   F
Sbjct: 266 WDQVFVWVGKDSQEEEKTEALTSAKRYIETDPAN---RDRRTPITVVKQGFEPPSFVGWF 322
Query: 132 HAWS 135
             W 
Sbjct: 323 LGWD 326

>pdb|1H1V|G Chain G, Gelsolin G4-G6ACTIN COMPLEX Length = 331

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 7/124 (5%)
Query: 14  GTFQSYASSINKRNQGKVSNLARLFGFRCSNEKGYFTVSEKCTDFCQXXXXXXXXXXXXN 73
           G   +Y +S   +++   ++  RLF   CSN+ G F + E   +  Q             
Sbjct: 208 GGKAAYRTSPRLKDKKMDAHPPRLFA--CSNKIGRFVIEEVPGELMQEDLATDDVMLLDT 265
Query: 74  GEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERPRKLFLTL--KGKESRRFTKCF 131
            +QVF+W+G    E E   A  SA  YI+   A    R R+  +T+  +G E   F   F
Sbjct: 266 WDQVFVWVGKDSQEEEKTEALTSAKRYIETDPAN---RDRRTPITVVKQGFEPPSFVGWF 322
Query: 132 HAWS 135
             W 
Sbjct: 323 LGWD 326

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	142
1d0n_A	729	Horse plasma gelsolin; mixed alpha-beta structure,	8e-28
1d0n_A	729	Horse plasma gelsolin; mixed alpha-beta structure,	6e-10
1d0n_A	729	Horse plasma gelsolin; mixed alpha-beta structure,	1e-06
1d0n_A	729	Horse plasma gelsolin; mixed alpha-beta structure,	5e-04
3fg6_A	371	Adseverin, scinderin; C-terminus of adseverin, act	1e-27
2fh1_A	344	Gelsolin; calcium, contractIle protein; 1.55A {Hom	3e-27
3fg7_A	398	Villin-1; actin binding protein, gelsolin, actin c	5e-26
3fg7_A	398	Villin-1; actin binding protein, gelsolin, actin c	4e-05
1j72_A	347	Macrophage capping protein; actin, human, CAP G, G	1e-12
1j72_A	347	Macrophage capping protein; actin, human, CAP G, G	2e-06
1kcq_A	104	Gelsolin, brevin, ADF, AGEL; alpha-beta structure,	5e-06
1svq_A	114	Severin; actin-binding; NMR {Dictyostelium discoid	2e-04

>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* Length = 729

 Score =  106 bits (265), Expect = 8e-28
 Identities = 37/116 (31%), Positives = 52/116 (44%), Gaps = 1/116 (0%)

Query: 25  KRNQGKVSNLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSK 84
            R + K  +      F CSN+ G F + E   +F Q+DLA DD+M+LD  +QVF+W+G  
Sbjct: 602 PRLKDKKMDAHPPRLFACSNKIGRFVIEEVPGEFMQEDLATDDVMLLDTWDQVFVWVGKD 661

Query: 85  CSEVEVKLAYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKKP 140
             + E   A  SA  YI    A    R   + +  +G E   F   F  W      
Sbjct: 662 SQDEEKTEALTSAKRYIDTDPAHRD-RRTPITVVKQGFEPPSFVGWFLGWDDSYWS 716

>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* Length = 729

 Score = 54.9 bits (131), Expect = 6e-10
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 11/102 (10%)

Query: 40  FRCSNEKGYFTVSEKCTD--FCQDDLADDDMMILDNGE--QVFLWLGSKCSEVEVKLAYK 95
           ++ SN  G   VS    +  F Q  L  +D  ILD+G+  ++F+W G + +  E K A K
Sbjct: 248 YKVSNGAGPMVVSLVADENPFAQGALRSEDCFILDHGKDGKIFVWKGKQANMEERKAALK 307

Query: 96  SALVYIQHLRAKEPERPRKLFLT--LKGKESRRFTKCFHAWS 135
           +A  +I  +     + P++  ++   +G E+  F + F  W 
Sbjct: 308 TASDFISKM-----DYPKQTQVSVLPEGGETPLFRQFFKNWR 344

>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* Length = 729

 Score = 46.1 bits (108), Expect = 1e-06
 Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 4/103 (3%)

Query: 40  FRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALV 99
            R    KG   V         +   + D  ILD G  ++ W GSK +  E   A + +  
Sbjct: 134 QRLLQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIYQWCGSKSNRFERLKATQVS-- 191

Query: 100 YIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKKPPE 142
             + +R  E     ++ +  +G E     +         +  E
Sbjct: 192 --KGIRDNERSGRAQVSVFEEGAEPEAMLQVLGPKPTLPEATE 232

>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* Length = 729

 Score = 38.0 bits (87), Expect = 5e-04
 Identities = 23/123 (18%), Positives = 39/123 (31%), Gaps = 14/123 (11%)

Query: 10  CWSKGTFQSYASSINKRNQGKVSNLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMM 69
            +       Y    ++          RLF  R ++  G     E         L  +D  
Sbjct: 485 LFGGKPMIVYKGGTSREGGQTAPASTRLFQVR-ASSSGATRAVEIIPKAGA--LNSNDAF 541

Query: 70  ILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTK 129
           +L      +LW+G+  SE E   A +      + LRA+  +         +G E   F +
Sbjct: 542 VLKTPSAAYLWVGAGASEAEKTGAQELL----RVLRAQPVQ-------VAEGSEPDSFWE 590

Query: 130 CFH 132
              
Sbjct: 591 ALG 593

>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} Length = 371

 Score =  104 bits (259), Expect = 1e-27
 Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 1/99 (1%)

Query: 40  FRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALV 99
           + CSN+ G F + E   +F QDDLA+DD+M+LD  EQ+F+W+G   +EVE K + KSA +
Sbjct: 273 YGCSNKTGRFVIEEIPGEFTQDDLAEDDVMLLDAWEQIFIWIGKDANEVEKKESLKSAKM 332

Query: 100 YIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHK 138
           Y++   +    +   + +  +G E   FT  F  W   K
Sbjct: 333 YLETDPSGRD-KRTPIVIIKQGHEPPTFTGWFLGWDSSK 370

>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A Length = 344

 Score =  102 bits (255), Expect = 3e-27
 Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 14  GTFQSYASSINKRNQGKVSNLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDN 73
           G   +Y +S   R + K  +      F CSN+ G F + E   +  Q+DLA DD+M+LD 
Sbjct: 208 GGKAAYRTS--PRLKDKKMDAHPPRLFACSNKIGRFVIEEVPGELMQEDLATDDVMLLDT 265

Query: 74  GEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHA 133
            +QVF+W+G    E E   A  SA  YI+   A    R   + +  +G E   F   F  
Sbjct: 266 WDQVFVWVGKDSQEEEKTEALTSAKRYIETDPANRD-RRTPITVVKQGFEPPSFVGWFLG 324

Query: 134 W 134
           W
Sbjct: 325 W 325

>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} Length = 398

 Score =  100 bits (249), Expect = 5e-26
 Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 2/102 (1%)

Query: 40  FRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALV 99
           F CSN+ G F  +E   DF QDDL +DD+ +LD  +QVF W+G   +E E K A  +A  
Sbjct: 286 FECSNKTGRFLATE-IPDFNQDDLEEDDVFLLDVWDQVFFWIGKHANEEEKKAAATTAQE 344

Query: 100 YIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKKPP 141
           Y++   +        + +  +G E   FT  F AW   K   
Sbjct: 345 YLKTHPSGRDPE-TPIIVVKQGHEPPTFTGWFLAWDPFKWSG 385

>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} Length = 398

 Score = 41.0 bits (95), Expect = 4e-05
 Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 5/99 (5%)

Query: 36  RLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYK 95
           RLF  + +                 + L  +D+ +L      +LW G  CS  E ++A  
Sbjct: 180 RLFQVQGTGANN---TKAFEVPARANFLNSNDVFVLKTQSCCYLWCGKGCSGDEREMAKM 236

Query: 96  SA--LVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFH 132
            A  +   +     E + P   ++ L GK     TK   
Sbjct: 237 VADTISRTEKQVVVEGQEPANFWMALGGKAPYANTKRLQ 275

>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A Length = 347

 Score = 62.6 bits (151), Expect = 1e-12
 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 11/101 (10%)

Query: 40  FRCSNEKGYFTVS--EKCTDFCQDDLADDDMMILDNGE--QVFLWLGSKCSEVEVKLAYK 95
           ++ S+  G   ++     + F  + L  DD  +LDNG   ++++W G K +E E + A +
Sbjct: 251 YKVSDATGQMNLTKVADSSPFALELLISDDCFVLDNGLCGKIYIWKGRKANEKERQAALQ 310

Query: 96  SALVYIQHLRAKEPERPR--KLFLTLKGKESRRFTKCFHAW 134
            A  +I  +     +     ++ +  +G+ES  F + F  W
Sbjct: 311 VAEGFISRM-----QYAPNTQVEILPQGRESPIFKQFFKDW 346

>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A Length = 347

 Score = 44.9 bits (105), Expect = 2e-06
 Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 4/92 (4%)

Query: 40  FRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALV 99
            R    KG   +         D     D  ILD G+ +F W G K + +E       A  
Sbjct: 136 QRLYQVKGKKNIRATERALNWDSFNTGDCFILDLGQNIFAWCGGKSNILERNK----ARD 191

Query: 100 YIQHLRAKEPERPRKLFLTLKGKESRRFTKCF 131
               +R  E +   ++ +   G+E     +  
Sbjct: 192 LALAIRDSERQGKAQVEIVTDGEEPAEMIQVL 223

>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1 Length = 104

 Score = 41.7 bits (98), Expect = 5e-06
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 9/96 (9%)

Query: 36  RLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYK 95
           RLF  +    KG   V         +   + D  ILD G  +  W GS  +  E   A +
Sbjct: 4   RLF--QV---KGRRVVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQ 58

Query: 96  SALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCF 131
            +    + +R  E     ++ ++ +G E     +  
Sbjct: 59  VS----KGIRDNERSGRARVHVSEEGTEPEAMLQVL 90

>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A Length = 114

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 17/87 (19%), Positives = 26/87 (29%), Gaps = 5/87 (5%)

Query: 46  KGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLR 105
            G               L   D  +LD G  ++ + GSK S  E   A + A    + + 
Sbjct: 19  SGDKNAKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSSPQEKNKAAEVA----RAID 74

Query: 106 AKEPERPRKLFLTL-KGKESRRFTKCF 131
           A+    P+              F K  
Sbjct: 75  AERKGLPKVEVFCETDSDIPAEFWKLL 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	142
3fg7_A	398	Villin-1; actin binding protein, gelsolin, actin c	100.0
3fg6_A	371	Adseverin, scinderin; C-terminus of adseverin, act	100.0
2fh1_A	344	Gelsolin; calcium, contractIle protein; 1.55A {Hom	100.0
1d0n_A	729	Horse plasma gelsolin; mixed alpha-beta structure,	99.97
1j72_A	347	Macrophage capping protein; actin, human, CAP G, G	99.97
1d0n_A	729	Horse plasma gelsolin; mixed alpha-beta structure,	99.95
1kcq_A	104	Gelsolin, brevin, ADF, AGEL; alpha-beta structure,	99.92
1svq_A	114	Severin; actin-binding; NMR {Dictyostelium discoid	99.89
1j72_A	347	Macrophage capping protein; actin, human, CAP G, G	99.76
2fh1_A	344	Gelsolin; calcium, contractIle protein; 1.55A {Hom	99.73
3fg6_A	371	Adseverin, scinderin; C-terminus of adseverin, act	99.69
3fg7_A	398	Villin-1; actin binding protein, gelsolin, actin c	99.62
3cip_G	128	Gelsolin; actin, dictyostelium discoideum, actin-a	98.82
2ff3_A	150	Gelsolin; protein-protein complex, structural prot	98.8
1t44_G	147	Chimera of gelsolin domain 1 and C-terminal domain	98.74
2vik_A	126	Villin 14T; actin-binding protein, capping protein	98.67
3tu5_B	297	Gelsolin, protein cordon-BLeu, thymosin beta-4; un	98.39
3eh2_A	766	Protein transport protein SEC24C; copii-coat prote	97.22
3efo_B	770	SEC24 related gene family, member D; copii, coat p	96.98
1pcx_A	810	Protein transport protein SEC24; 2.50A {Saccharomy	96.87
3eh1_A	751	Protein transport protein SEC24B; copii coat prote	96.46
2nut_A	769	Protein transport protein SEC23A; human copii SEC2	96.14
1m2o_A	768	SEC23, protein transport protein SEC23, SEC23P; zi	96.03
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	95.94

>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A

Probab=100.00  E-value=1.3e-33  Score=232.04  Aligned_cols=128  Identities=34%  Similarity=0.570  Sum_probs=96.9

Q ss_pred             ccccc-CcccCcccccccccCCCCccCcceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCCC
Q psy555            8 AYCWS-KGTFQSYASSINKRNQGKVSNLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCS   86 (142)
Q Consensus         8 ~~FW~-lGg~~~~~~~~~~~~~~~~~~~~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~   86 (142)
                      .+||. |||+.+|++.....++ .....+||  |+|++++|.+.++|| .+|+|+||+++||||||++.+||||+|++|+
T Consensus       256 ~~Fw~~LGg~~~~~~~~~~~~~-~~~~~~rL--f~~s~~~G~~~v~EV-~~f~Q~dL~~~dv~ILD~g~~IfVW~G~~as  331 (398)
T 3fg7_A          256 ANFWMALGGKAPYANTKRLQEE-NLVITPRL--FECSNKTGRFLATEI-PDFNQDDLEEDDVFLLDVWDQVFFWIGKHAN  331 (398)
T ss_dssp             -----------------------CCCCCCEE--EEEECTTSSCEEEEC-TTCCGGGCCTTSEEEEECSSCEEEEECTTCC
T ss_pred             hhHHHHhCCCccCCChhhhccc-hhcccCee--EEEEcCCCCEEEEEe-cccCHHHCCCCCEEEEeCCCEEEEEECCCCC
Confidence            56999 9999999876543332 22458999  999999999999998 5899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCceEEEecCCCCChhhHhhhcCCCCCCCC
Q psy555           87 EVEVKLAYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKKP  140 (142)
Q Consensus        87 ~~ek~~a~~~A~~y~~~~~~~~~~~~~~i~~v~eG~Ep~~Fk~~F~~W~~~~~~  140 (142)
                      ..||+.|+.+|++|++..+. .+++.++|.+|.||.||..|+++|++|+..+++
T Consensus       332 ~~Er~~Al~~A~~yi~~~~~-~r~~~tpi~~V~eG~Ep~~Fk~~F~~Wd~~~~~  384 (398)
T 3fg7_A          332 EEEKKAAATTAQEYLKTHPS-GRDPETPIIVVKQGHEPPTFTGWFLAWDPFKWS  384 (398)
T ss_dssp             HHHHHHHHHHHHHHHHHSSS-SCCTTCCEEEEETTCCCHHHHTTSSCCCTTCC-
T ss_pred             HHHHHHHHHHHHHHHHhCcc-cCCCCCCEEEEcCCCCCHHHHHhhhcCChhhhc
Confidence            99999999999999998644 233469999999999999999999999999875

>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}

Probab=100.00  E-value=4.9e-34  Score=232.78  Aligned_cols=128  Identities=34%  Similarity=0.594  Sum_probs=106.6

Q ss_pred             ccccc-CcccCcccccccccCCCCccCcceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCCC
Q psy555            8 AYCWS-KGTFQSYASSINKRNQGKVSNLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCS   86 (142)
Q Consensus         8 ~~FW~-lGg~~~~~~~~~~~~~~~~~~~~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~   86 (142)
                      .+||. |||+++|++.....++. ...++||  |+|++++|.+.++||..+|+|+||++++|||||++.+||||+|++|+
T Consensus       243 ~~Fw~~LGg~~~~~~~~~~~~~~-~~~~~rL--f~~s~~~G~~~v~ev~~~f~Q~dL~~~dv~ILD~~~~IfVW~G~~as  319 (371)
T 3fg6_A          243 EEFWNSLGGKKDYQTSPLLETQA-EDHPPRL--YGCSNKTGRFVIEEIPGEFTQDDLAEDDVMLLDAWEQIFIWIGKDAN  319 (371)
T ss_dssp             HHHHHHTTSCCCCBCCTTTSSCC-CSSCCEE--EEEECTTSSCEEEECCSSCCGGGSCTTSEEEEECSSCEEEEECTTCC
T ss_pred             HHHHHHcCCCcccCcchhhcccc-cccCcEE--EEEEcCCCcEEEEEecccccHhHCCCCCEEEEeCCCEEEEEECCCCC
Confidence            46999 99999998765433321 2357999  99999999999999955899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCceEEEecCCCCChhhHhhhcCCCCCCC
Q psy555           87 EVEVKLAYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKK  139 (142)
Q Consensus        87 ~~ek~~a~~~A~~y~~~~~~~~~~~~~~i~~v~eG~Ep~~Fk~~F~~W~~~~~  139 (142)
                      ..||+.|+.+|++|++..+. +++..++|.+|.||.||..|+++|++|++.+|
T Consensus       320 ~~Er~~A~~~A~~yi~~~~~-~r~~~t~i~~v~eG~Ep~~Fk~~F~~W~~~~~  371 (371)
T 3fg6_A          320 EVEKKESLKSAKMYLETDPS-GRDKRTPIVIIKQGHEPPTFTGWFLGWDSSKW  371 (371)
T ss_dssp             HHHHHHHHHHHTTCC-----------CCEEEEETTCCCHHHHTTSSSCCTTCC
T ss_pred             HHHHHHHHHHHHHHHHhCcc-CCCCCCCEEEecCCCCCHHHHhhhccCCcccC
Confidence            99999999999999998643 23357999999999999999999999999875

>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A

Probab=100.00  E-value=2.3e-33  Score=226.61  Aligned_cols=130  Identities=32%  Similarity=0.492  Sum_probs=108.5

Q ss_pred             ccccc-CcccCcccccccccCCCCccCcceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCCC
Q psy555            8 AYCWS-KGTFQSYASSINKRNQGKVSNLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCS   86 (142)
Q Consensus         8 ~~FW~-lGg~~~~~~~~~~~~~~~~~~~~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~   86 (142)
                      .+||. |||+.+|++......+......+||  |+|++++|.+.++||..+|+|+||++++|||||++.+||||+|++|+
T Consensus       201 ~~Fw~~LGg~~~y~~~~~~~~~~~~~~~~rL--f~~s~~~G~~~v~ev~~~f~q~dL~~~dv~iLD~g~~IfVW~G~~as  278 (344)
T 2fh1_A          201 DGFWEALGGKAAYRTSPRLKDKKMDAHPPRL--FACSNKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQ  278 (344)
T ss_dssp             HHHHHHTTSCCCCBCCHHHHCSCC--CCCEE--EEEECTTSSCEEEEECSSCCGGGSCTTSEEEEECSSCEEEEECTTCC
T ss_pred             HHHHHhcCCCCccccccccccccccccCCEE--EEEEcCCCCEEEEEccCCcCHhHCCCCCEEEEeCCCEEEEEECCCCC
Confidence            47999 9999999875433212111368999  99999999999999955999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCceEEEecCCCCChhhHhhhcCCCCCCCC
Q psy555           87 EVEVKLAYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKKP  140 (142)
Q Consensus        87 ~~ek~~a~~~A~~y~~~~~~~~~~~~~~i~~v~eG~Ep~~Fk~~F~~W~~~~~~  140 (142)
                      ..||+.|+.+|++|++..+. ++++.++|.+|.||.||..|+++|++|++.+++
T Consensus       279 ~~er~~A~~~A~~y~~~~~~-~r~~~t~i~~V~eG~Ep~~Fk~~F~~W~~~~~~  331 (344)
T 2fh1_A          279 EEEKTEALTSAKRYIETDPA-NRDRRTPITVVKQGFEPPSFVGWFLGWDDDYWS  331 (344)
T ss_dssp             HHHHHHHHHHHHHHHHTC--------CCEEEEETTCCCHHHHTTSSSCCTTCC-
T ss_pred             HHHHHHHHHHHHHHHHhCcc-CCCCCCcEEEEcCCCCCHHHHHHHhhcChhhcC
Confidence            99999999999999997533 233579999999999999999999999999874

>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*

Probab=99.97  E-value=6.6e-31  Score=229.44  Aligned_cols=130  Identities=32%  Similarity=0.504  Sum_probs=112.8

Q ss_pred             ccccc-CcccCcccccccccCCCCccCcceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCCC
Q psy555            8 AYCWS-KGTFQSYASSINKRNQGKVSNLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCS   86 (142)
Q Consensus         8 ~~FW~-lGg~~~~~~~~~~~~~~~~~~~~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~   86 (142)
                      ++||. |||+.+|++....+.+......+||  |+|++++|.+.++||..+|+|+||+++||||||++++||||+|++|+
T Consensus       586 ~~FW~~LGg~~~y~~~~~~~~~~~~~~~~rL--f~~s~~~G~~~v~ev~~~f~Q~dL~~~dv~iLD~~~eifvWiG~~a~  663 (729)
T 1d0n_A          586 DSFWEALGGKATYRTSPRLKDKKMDAHPPRL--FACSNKIGRFVIEEVPGEFMQEDLATDDVMLLDTWDQVFVWVGKDSQ  663 (729)
T ss_dssp             HHHHHTTTSCCCCCCCCCCSTTHHHHSCCEE--EEEECTTTCCEEEECCSSCCGGGCCTTSEEEEECSSCEEEEECTTSC
T ss_pred             HHHHHhcCCCCccCcccccccccccccCCeE--EEEEcCCCcEEEEEecCcccHhHCCCCCEEEEeCCCEEEEEECCCCC
Confidence            57999 9999999886543122112458999  99999999999999955999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCceEEEecCCCCChhhHhhhcCCCCCCCC
Q psy555           87 EVEVKLAYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKKP  140 (142)
Q Consensus        87 ~~ek~~a~~~A~~y~~~~~~~~~~~~~~i~~v~eG~Ep~~Fk~~F~~W~~~~~~  140 (142)
                      ..||+.|+.+|++|++..+. ++++.++|.+|.+|.||..|+++|++|++.+++
T Consensus       664 ~~er~~al~~A~~Y~~~~~~-~r~~~~pi~~V~~G~Ep~~F~~~F~~Wd~~~~~  716 (729)
T 1d0n_A          664 DEEKTEALTSAKRYIDTDPA-HRDRRTPITVVKQGFEPPSFVGWFLGWDDSYWS  716 (729)
T ss_dssp             HHHHSSHHHHHHHHHHHCTT-CCCTTCCEEEEETTCCCHHHHTTCTTCCGGGGT
T ss_pred             HHHHHHHHHHHHHHHHhCcc-cCCCCCcEEEEeCCCCCHHHHhhhhhcCccccC
Confidence            99999999999999998544 233469999999999999999999999998763

>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A

Probab=99.97  E-value=4.5e-30  Score=207.29  Aligned_cols=122  Identities=23%  Similarity=0.419  Sum_probs=105.0

Q ss_pred             ccccc-CcccCcccccccccCC----CCccCcceeeeeEEEccCCCeEEEEee--cCCccCCCCCCcEEEEecC--CeEE
Q psy555            8 AYCWS-KGTFQSYASSINKRNQ----GKVSNLARLFGFRCSNEKGYFTVSEKC--TDFCQDDLADDDMMILDNG--EQVF   78 (142)
Q Consensus         8 ~~FW~-lGg~~~~~~~~~~~~~----~~~~~~~rL~~f~v~~~~g~l~v~ev~--~~~~q~~L~s~~vfILD~g--~~Iy   78 (142)
                      .+||. |||+.+|+.... .++    ......+||  |+|++.+|.+.++||.  .+|+|++|++++|||||++  ++||
T Consensus       217 ~~Fw~~LGg~~~~~~~~~-~~d~~~~~~~~~~~rL--y~vs~~~G~~~v~ev~~~~~~~q~~L~s~dv~ILD~g~~~~Iy  293 (347)
T 1j72_A          217 AEMIQVLGPKPALKEGNP-EEDLTADKANAQAAAL--YKVSDATGQMNLTKVADSSPFALELLISDDCFVLDNGLCGKIY  293 (347)
T ss_dssp             HHHHHHHCSCCCCBCSCC-SSCCTTSSSSSCCCEE--EEEECTTSSCEEEEEECSSSBCGGGCCTTSEEEEECGGGSEEE
T ss_pred             HHHHHHhCCCcccccCCc-chhhhhhhhcccCCEE--EEEECCCCCEEEEeeccCCCCCHHHcCCCCEEEEecCCCcEEE
Confidence            37999 999988866532 111    111257899  9999999999999985  3899999999999999999  8999


Q ss_pred             EEeCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEecCCCCChhhHhhhcCCC
Q psy555           79 LWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWS  135 (142)
Q Consensus        79 vW~G~~a~~~ek~~a~~~A~~y~~~~~~~~~~~~~~i~~v~eG~Ep~~Fk~~F~~W~  135 (142)
                      ||+|++|+..||+.|+++|++|++..+   ++.+++|++|.||.||..|+++|.+|+
T Consensus       294 VW~G~~a~~~er~~A~~~A~~y~~~~~---rp~~~~i~~v~eG~Ep~~Fk~~F~~W~  347 (347)
T 1j72_A          294 IWKGRKANEKERQAALQVAEGFISRMQ---YAPNTQVEILPQGRESPIFKQFFKDWK  347 (347)
T ss_dssp             EEECTTCCHHHHHHHHHHHHHHHHHHT---CCTTCEEEEEETTCCCTTTCCBSTTCC
T ss_pred             EEeCCCCCHHHHHHHHHHHHHHHHhcC---CCCCCeEEEEcCCCCCHHHHHHhhcCC
Confidence            999999999999999999999999753   334799999999999999999999996

>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*

Probab=99.95  E-value=9.1e-28  Score=209.69  Aligned_cols=124  Identities=25%  Similarity=0.427  Sum_probs=106.2

Q ss_pred             cccc-CcccCcccccccc--cCCCCccCcceeeeeEEEccCCCeEEEEeec--CCccCCCCCCcEEEEecCC-e-EEEEe
Q psy555            9 YCWS-KGTFQSYASSINK--RNQGKVSNLARLFGFRCSNEKGYFTVSEKCT--DFCQDDLADDDMMILDNGE-Q-VFLWL   81 (142)
Q Consensus         9 ~FW~-lGg~~~~~~~~~~--~~~~~~~~~~rL~~f~v~~~~g~l~v~ev~~--~~~q~~L~s~~vfILD~g~-~-IyvW~   81 (142)
                      +||. |||+.+|+.....  ..+......+||  |+|++++|.+.+++|..  +|+|++|++++|||||+++ + ||||+
T Consensus       216 eFw~~LGg~~~~~~~~~~~~~~~~~~~~~~rL--y~vs~~~G~l~~~ev~~~~~~~q~~L~~~dv~ILD~g~~~~ifVW~  293 (729)
T 1d0n_A          216 AMLQVLGPKPTLPEATEDTVKEDAANRKLAKL--YKVSNGAGPMVVSLVADENPFAQGALRSEDCFILDHGKDGKIFVWK  293 (729)
T ss_dssp             HHHHHHCSCCCCCCCCGGGSCCCCCCCCCCEE--EEEECSSSSCEEEEEESSSSBCGGGCCTTSEEEEEEGGGTEEEEEE
T ss_pred             HHHHHcCCCcccCCCCcchhhhhhccccCcEE--EEEECCCCCEEEEEeccCCCCCHHHcCCCCEEEEecCCccEEEEEE
Confidence            7999 9999888764321  111122457899  99999999999999953  8999999999999999995 4 99999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEecCCCCChhhHhhhcCCCCC
Q psy555           82 GSKCSEVEVKLAYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFH  137 (142)
Q Consensus        82 G~~a~~~ek~~a~~~A~~y~~~~~~~~~~~~~~i~~v~eG~Ep~~Fk~~F~~W~~~  137 (142)
                      |++|+..||+.||.+|++|++..+   ++.+++|++|.||.||..|+++|.+|++.
T Consensus       294 Gk~a~~~er~~A~~~A~~y~~~~~---~p~~t~i~~V~eG~Ep~~Fk~~F~~W~~~  346 (729)
T 1d0n_A          294 GKQANMEERKAALKTASDFISKMD---YPKQTQVSVLPEGGETPLFRQFFKNWRDP  346 (729)
T ss_dssp             CTTSCHHHHTTHHHHHHHHHHHTT---CCTTCEEEEEETTCCCHHHHTTBTTCCCT
T ss_pred             CCCCCHHHHHHHHHHHHHHHhhcc---CCCCCeEEEEeCCCCCHHHHHHHhcCCCc
Confidence            999999999999999999999853   23579999999999999999999999985

>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1

Probab=99.92  E-value=2.4e-24  Score=146.95  Aligned_cols=92  Identities=17%  Similarity=0.274  Sum_probs=81.9

Q ss_pred             cceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCc
Q psy555           34 LARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERPR  113 (142)
Q Consensus        34 ~~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~~~~~~~~~~  113 (142)
                      .+||  |||.+. +++++.||  ++++++|+++||||||+++.||||+|++|+..||.+|+++|+.+....    +...+
T Consensus         2 ~~rL--~~v~g~-~~~~~~eV--~~~~~sLns~d~FILd~g~~iyvW~G~~s~~~Ek~~A~~~a~~i~~~e----r~~~~   72 (104)
T 1kcq_A            2 VQRL--FQVKGR-RVVRATEV--PVSWESFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKGIRDNE----RSGRA   72 (104)
T ss_dssp             CCEE--EEEEES-SSEEEEEE--CSSGGGCCTTSEEEEECSSEEEEEECTTCCHHHHHHHHHHHHHHHHHT----STTCS
T ss_pred             CcEE--EEEECC-CcEEEEEe--cCCHHHcCCCCeEEEeCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhhc----cCCCC
Confidence            5799  999985 79999999  999999999999999999999999999999999999999998764331    12258


Q ss_pred             eEEEecCCCCChhhHhhhcCC
Q psy555          114 KLFLTLKGKESRRFTKCFHAW  134 (142)
Q Consensus       114 ~i~~v~eG~Ep~~Fk~~F~~W  134 (142)
                      +|.+|.||.||..|+..|.+=
T Consensus        73 ~i~~v~eG~E~~~Fw~~LGg~   93 (104)
T 1kcq_A           73 RVHVSEEGTEPEAMLQVLGPK   93 (104)
T ss_dssp             EEEEEETTCCCHHHHHHHCSC
T ss_pred             cEEEEeCCCCCHHHHHHcCCC
Confidence            999999999999999999864

>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A

Probab=99.89  E-value=9.8e-23  Score=141.16  Aligned_cols=94  Identities=22%  Similarity=0.205  Sum_probs=81.1

Q ss_pred             CcceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy555           33 NLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERP  112 (142)
Q Consensus        33 ~~~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~~~~~~~~~  112 (142)
                      ..+||  |||++. .++++.||  +++.++|+++||||||++..||||+|++|+..||.+|+++|+.+ ...+.    ..
T Consensus        11 ~~~rL--~~v~G~-~~~~~~eV--~~~~ssLns~D~FILd~g~~iyvW~G~~ss~~Ek~~A~~~a~~i-~~er~----g~   80 (114)
T 1svq_A           11 YKPRL--LHISGD-KNAKVAEV--PLATSSLNSGDCFLLDAGLTIYQFNGSKSSPQEKNKAAEVARAI-DAERK----GL   80 (114)
T ss_dssp             CCEEE--EEEECT-TSCEEEEE--CCCSSSCCTTSEEEEEETTEEEECCCTTCCHHHHHHHHHHHHHH-HHHHT----TC
T ss_pred             CCcEE--EEEECC-CcEEEEEe--cCCHHHcCCCCeEEEecCCEEEEEeCCCCCHHHHHHHHHHHHHh-hhccC----CC
Confidence            47899  999975 68999998  99999999999999999999999999999999999999999986 43211    13


Q ss_pred             ceEEEecCCC--CChhhHhhhcCCCC
Q psy555          113 RKLFLTLKGK--ESRRFTKCFHAWSF  136 (142)
Q Consensus       113 ~~i~~v~eG~--Ep~~Fk~~F~~W~~  136 (142)
                      ++|.+|.||.  ||..||..|.+=..
T Consensus        81 ~~i~vv~eg~~~E~~~Fw~~LGg~~~  106 (114)
T 1svq_A           81 PKVEVFCETDSDIPAEFWKLLGGKGA  106 (114)
T ss_dssp             SEEEECCCCTTCCCHHHHHHHTC---
T ss_pred             ccEEEEeCCCcCCcHHHHHHcCCCCC
Confidence            7899999999  99999999986443

>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A

Probab=99.76  E-value=6.1e-18  Score=136.28  Aligned_cols=94  Identities=21%  Similarity=0.367  Sum_probs=81.1

Q ss_pred             CcceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy555           33 NLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERP  112 (142)
Q Consensus        33 ~~~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~~~~~~~~~  112 (142)
                      ..+||  |||.+. +++++.||  +++.++|+++||||||++..||+|+|++|+..||.+|+.+|+.+ +..   .+...
T Consensus       134 ~~~rL--~~v~G~-~~v~~~eV--~~~~~sLns~d~FIL~~~~~iy~W~G~~s~~~Er~~A~~~a~~i-~~~---~~~g~  204 (347)
T 1j72_A          134 VVQRL--YQVKGK-KNIRATER--ALNWDSFNTGDCFILDLGQNIFAWCGGKSNILERNKARDLALAI-RDS---ERQGK  204 (347)
T ss_dssp             EEEEE--EEEECS-SSCEEEEE--CSSGGGCBTTSEEEEEETTEEEEEECTTCCHHHHHHHHHHHHHH-HTT---SCCSS
T ss_pred             CCcEE--EEEECC-CceEEEEE--eeeHHHcCCCceEEEecCCEEEEEECCCCCHHHHHHHHHHHHHH-Hhh---ccCCC
Confidence            35899  999875 58899998  99999999999999999999999999999999999999999864 421   11224


Q ss_pred             ceEEEecCCCCChhhHhhhcCCC
Q psy555          113 RKLFLTLKGKESRRFTKCFHAWS  135 (142)
Q Consensus       113 ~~i~~v~eG~Ep~~Fk~~F~~W~  135 (142)
                      +.+.+|.||.||..|+++|.+-.
T Consensus       205 ~~v~~v~EG~E~~~Fw~~LGg~~  227 (347)
T 1j72_A          205 AQVEIVTDGEEPAEMIQVLGPKP  227 (347)
T ss_dssp             CEEEEEETTCCCHHHHHHHCSCC
T ss_pred             ceEEEEeCCCCHHHHHHHhCCCc
Confidence            78999999999999999997643

>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A

Probab=99.73  E-value=2.6e-17  Score=132.63  Aligned_cols=86  Identities=22%  Similarity=0.285  Sum_probs=77.1

Q ss_pred             CcceeeeeEEEc-cCCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy555           33 NLARLFGFRCSN-EKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPER  111 (142)
Q Consensus        33 ~~~rL~~f~v~~-~~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~~~~~~~~  111 (142)
                      ..+||  |||+. ..+++++.||  +++.++|+|+||||||++..||||+|++|+..||.+|+.+|+.+           
T Consensus       123 ~~~rL--~~v~g~~~~~~~~~eV--~~~~ssLns~d~FIL~~~~~iyvW~G~~s~~~er~~A~~~a~~l-----------  187 (344)
T 2fh1_A          123 ASTRL--FQVRANSAGATRAVEV--LPKAGALNSNDAFVLKTPSAAYLWVGTGASEAEKTGAQELLRVL-----------  187 (344)
T ss_dssp             CSSEE--EEEEECTTCCEEEEEE--CCSGGGCBTTSEEEEECSSCEEEEECTTCCHHHHHHHHHHHHHT-----------
T ss_pred             CCceE--EEEECCCCCceEEEEe--cCchhhcCCCceEEEecCCEEEEEECCCCCHHHHHHHHHHHHHh-----------
Confidence            46899  99985 4468999999  99999999999999999999999999999999999999999764           


Q ss_pred             CceEEEecCCCCChhhHhhhcC
Q psy555          112 PRKLFLTLKGKESRRFTKCFHA  133 (142)
Q Consensus       112 ~~~i~~v~eG~Ep~~Fk~~F~~  133 (142)
                      ..++.+|.||.||.+|+..|.+
T Consensus       188 ~~~i~~v~EG~E~~~Fw~~LGg  209 (344)
T 2fh1_A          188 RAQPVQVAEGSEPDGFWEALGG  209 (344)
T ss_dssp             TCCCEEEETTCCCHHHHHHTTS
T ss_pred             CCCcEEEeCCCCcHHHHHhcCC
Confidence            1457899999999999999975

>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}

Probab=99.69  E-value=1.9e-16  Score=128.99  Aligned_cols=87  Identities=23%  Similarity=0.313  Sum_probs=75.1

Q ss_pred             CcceeeeeEEEccC-CCeEEEEeecCCccCCCCCCcEEEEecC-CeEEEEeCCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy555           33 NLARLFGFRCSNEK-GYFTVSEKCTDFCQDDLADDDMMILDNG-EQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPE  110 (142)
Q Consensus        33 ~~~rL~~f~v~~~~-g~l~v~ev~~~~~q~~L~s~~vfILD~g-~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~~~~~~~  110 (142)
                      ..+||  |||.... ..+++.||  +++.++|+|+||||||++ +.||+|+|++|+..||.+|+.+|+.+ +        
T Consensus       164 ~~~rL--~~vrg~~~~~vr~~EV--~~~~ssLns~d~FILd~~~~~iyvW~G~~ss~~Er~~A~~~a~~i-~--------  230 (371)
T 3fg6_A          164 PPTRL--FQVRRNLASITRIVEV--DVDANSLNSNDVFVLKLPQNSGYIWVGKGASQEEEKGAEYVASVL-K--------  230 (371)
T ss_dssp             -CCEE--EEEECCSSSCCEEEEE--CSSGGGCBTTSEEEEECTTSEEEEEECTTCCHHHHHHHHHHHHHT-T--------
T ss_pred             CccEE--EEEeccCCCceEEEEe--cCCHHHccCCCeEEEEcCCCeEEEEECCCCCHHHHHHHHHHHHHh-c--------
Confidence            46899  9998653 47899998  999999999999999999 99999999999999999999999763 2        


Q ss_pred             CCceEEEecCCCCChhhHhhhcCC
Q psy555          111 RPRKLFLTLKGKESRRFTKCFHAW  134 (142)
Q Consensus       111 ~~~~i~~v~eG~Ep~~Fk~~F~~W  134 (142)
                        ..+.+|.||.||.+|+..|.+=
T Consensus       231 --~~~~~v~EG~Ep~~Fw~~LGg~  252 (371)
T 3fg6_A          231 --CKTLRIQEGEEPEEFWNSLGGK  252 (371)
T ss_dssp             --CEEEEEETTCCCHHHHHHTTSC
T ss_pred             --CCeEEEeCCCCCHHHHHHcCCC
Confidence              1136789999999999999764

>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A

Probab=99.62  E-value=2.7e-17  Score=135.09  Aligned_cols=87  Identities=21%  Similarity=0.300  Sum_probs=0.0

Q ss_pred             CcceeeeeEEEccCC-CeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy555           33 NLARLFGFRCSNEKG-YFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPER  111 (142)
Q Consensus        33 ~~~rL~~f~v~~~~g-~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~~~~~~~~  111 (142)
                      ..+||  |||.+... +.++.||  +++.++|+|+||||||+++.||+|+|++|+..||.+|+.+|+.+ +.        
T Consensus       177 ~~~rL--f~VrG~~~~~~ra~EV--~~s~sSLns~d~FILd~~~~iyvW~G~~ss~~Er~~A~~va~~i-~~--------  243 (398)
T 3fg7_A          177 PSTRL--FQVQGTGANNTKAFEV--PARANFLNSNDVFVLKTQSCCYLWCGKGCSGDEREMAKMVADTI-SR--------  243 (398)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcEE--EEEECCCCCceEEEEe--cCCHHHccCCceEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHh-cC--------
Confidence            46899  99986542 5788888  89999999999999999999999999999999999999999864 21        


Q ss_pred             CceEEEecCCCCChhhHhhhcC
Q psy555          112 PRKLFLTLKGKESRRFTKCFHA  133 (142)
Q Consensus       112 ~~~i~~v~eG~Ep~~Fk~~F~~  133 (142)
                       ..+.+|.||.||.+|+..+.+
T Consensus       244 -~~~~~v~EG~Ep~~Fw~~LGg  264 (398)
T 3fg7_A          244 -TEKQVVVEGQEPANFWMALGG  264 (398)
T ss_dssp             ----------------------
T ss_pred             -CcEEEEeCCCCchhHHHHhCC
Confidence             456789999999999998875

>3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl histidine, ATP-binding, cytoskeleton, nucleotide-BIN phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP: d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A* 1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S* 1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S* 3a5o_S*

Probab=98.82  E-value=3.3e-08  Score=69.30  Aligned_cols=89  Identities=20%  Similarity=0.238  Sum_probs=64.2

Q ss_pred             ceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEec------C---CeEEEEeCCCCCHHHHHHHHHHHHHHHHhhc
Q psy555           35 ARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDN------G---EQVFLWLGSKCSEVEVKLAYKSALVYIQHLR  105 (142)
Q Consensus        35 ~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~------g---~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~~  105 (142)
                      +.|-+||+.+.    ....+ .+-..-.+.++||||+=.      +   ..||.|+|++|+.+|+..|...|.+.-....
T Consensus        18 ~gl~vWrIe~~----~~~~v-p~~~~G~Fy~gd~YIvl~ty~~~~g~~~~~i~~W~G~~ss~de~g~Aa~~aveLd~~lg   92 (128)
T 3cip_G           18 PGLQIWRVEKF----DLVPV-PTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLN   92 (128)
T ss_dssp             SEEEEEEEETT----EEEEC-CGGGTTEEETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCeEEEEEeCC----EEEEC-ChHHcCeecCCCeEEEEEEEecCCCceEEEEEEEcCCCCCcchHHHHHHHHHHHHHHcC
Confidence            33434888632    33333 123456788999999722      2   3699999999999999999888888655532


Q ss_pred             CCCCCCCceEEEecCCCCChhhHhhhcC
Q psy555          106 AKEPERPRKLFLTLKGKESRRFTKCFHA  133 (142)
Q Consensus       106 ~~~~~~~~~i~~v~eG~Ep~~Fk~~F~~  133 (142)
                        +   .+...++.||+||..|.++|.+
T Consensus        93 --g---~~vq~R~~QG~E~~~Fl~~F~~  115 (128)
T 3cip_G           93 --G---RAVQHREVQGFESATFLGYFKS  115 (128)
T ss_dssp             --T---CEEEEEEETTCCCHHHHTTCTT
T ss_pred             --C---CceEEEeECCCCCHHHHHHhCC
Confidence              1   2456789999999999999974

>2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 PDB: 2ff6_G*

Probab=98.80  E-value=3.8e-08  Score=70.71  Aligned_cols=90  Identities=21%  Similarity=0.265  Sum_probs=64.7

Q ss_pred             cceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEec------C---CeEEEEeCCCCCHHHHHHHHHHHHHHHHhh
Q psy555           34 LARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDN------G---EQVFLWLGSKCSEVEVKLAYKSALVYIQHL  104 (142)
Q Consensus        34 ~~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~------g---~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~  104 (142)
                      .+.|-+||+.+    +....+ .+-..-.+.++||||+=.      +   ..||.|+|++|+.+|+..|...|.+.-...
T Consensus        36 ~~gl~VWrIe~----~~~v~v-p~~~~G~FysgD~YIVl~ty~~~~g~~~~~IyfW~G~~ss~de~gaAA~~aveLd~~l  110 (150)
T 2ff3_A           36 EPGLQIWRVEK----FDLVPV-PTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYL  110 (150)
T ss_dssp             SSEEEEEEEET----TEEEEC-CGGGTTEEETTSEEEEEEEEECTTSSEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCeEEEEEeC----CEEEEC-ChHHcCeecCCCeEEEEEEEecCCCceEEEEEEEeCCCCCchhHHHHHHHHHHHHHHc
Confidence            33444488863    233343 123456789999999621      2   369999999999999999988888866553


Q ss_pred             cCCCCCCCceEEEecCCCCChhhHhhhcC
Q psy555          105 RAKEPERPRKLFLTLKGKESRRFTKCFHA  133 (142)
Q Consensus       105 ~~~~~~~~~~i~~v~eG~Ep~~Fk~~F~~  133 (142)
                      .  +   .+...++.||.||..|.++|.+
T Consensus       111 g--g---~~vQ~Re~QG~Ep~~Fl~lFkg  134 (150)
T 2ff3_A          111 N--G---RAVQHREVQGFESATFLGYFKS  134 (150)
T ss_dssp             T--T---CCEEEEEETTCCCHHHHHTCTT
T ss_pred             C--C---CceEEEeECCCCCHHHHHHhcC
Confidence            2  1   2456789999999999999973

>1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1

Probab=98.74  E-value=9e-08  Score=68.54  Aligned_cols=88  Identities=20%  Similarity=0.237  Sum_probs=63.7

Q ss_pred             ceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEec------C---CeEEEEeCCCCCHHHHHHHHHHHHHHHHhhc
Q psy555           35 ARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDN------G---EQVFLWLGSKCSEVEVKLAYKSALVYIQHLR  105 (142)
Q Consensus        35 ~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~------g---~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~~  105 (142)
                      +.|-+||+.+.    ....+ .+-..-.+.++||||+=.      +   ..||.|+|++|+.+++-.|...|.+.-....
T Consensus        15 ~gl~VWrIe~~----~~~~v-p~~~~G~Fy~gd~YIvl~ty~~~~g~~~~~i~~W~G~~ss~de~g~Aa~~aveLd~~lg   89 (147)
T 1t44_G           15 PGLQIWRVEKF----DLVPV-PTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLN   89 (147)
T ss_dssp             SEEEEEEEETT----EEEEC-CGGGTTEEETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCeEEEEEeCC----EEEEC-ChHHcCeecCCCeEEEEEEEecCCCceEEEEEEEeCCCCChhHHHHHHHHHHHHHHHcC
Confidence            33433888632    33333 123456789999999722      2   3699999999999999999888888655432


Q ss_pred             CCCCCCCceEEEecCCCCChhhHhhhc
Q psy555          106 AKEPERPRKLFLTLKGKESRRFTKCFH  132 (142)
Q Consensus       106 ~~~~~~~~~i~~v~eG~Ep~~Fk~~F~  132 (142)
                        +   .+...++.||+||..|.++|.
T Consensus        90 --g---~~vq~R~~QG~Ep~~Fl~~F~  111 (147)
T 1t44_G           90 --G---RAVQHREVQGFESATFLGYFK  111 (147)
T ss_dssp             --T---CCEEEEEETTCCCHHHHTTCT
T ss_pred             --C---CceEEEEECCCCCHHHHHHhC
Confidence              1   255678999999999999997

>2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding protein, cytoskeletal protein; NMR {Gallus gallus} SCOP: d.109.1.1 PDB: 2vil_A

Probab=98.67  E-value=6.7e-08  Score=67.54  Aligned_cols=71  Identities=20%  Similarity=0.236  Sum_probs=56.3

Q ss_pred             CccCCCCCCcEEEEec--------CCeEEEEeCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEecCCCCChhhHh
Q psy555           58 FCQDDLADDDMMILDN--------GEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTK  129 (142)
Q Consensus        58 ~~q~~L~s~~vfILD~--------g~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~~~~~~~~~~~i~~v~eG~Ep~~Fk~  129 (142)
                      -..-.+.++||||+=.        ...||.|+|++|+.+|+-.|...|.+.-....  +   .+...++.||+||..|.+
T Consensus        34 ~~~G~Fy~gd~YIvl~t~~~~g~~~~~i~~W~G~~ss~de~g~Aa~~aveLd~~lg--g---~~vq~R~~QG~E~~~Fl~  108 (126)
T 2vik_A           34 KSYGNFYEGDCYVLLSTRKTGSGFSYNIHYWLGKNSSQDEQGAAAIYTTQMDEYLG--S---VAVQHREVQGHESETFRA  108 (126)
T ss_dssp             TTTTCCCSSSCEEEEEEEECSSSEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTT--S---CSCEEEEETTTSHHHHHH
T ss_pred             hhcCeeCCCCeEEEEEeccCCCceeEEEEEEeCCCCCchhHHHHHHHHHHHHHHcC--C---CccEEEEECCCCCHHHHH
Confidence            4456789999999822        24699999999999999999888888655432  1   244678999999999999


Q ss_pred             hhcC
Q psy555          130 CFHA  133 (142)
Q Consensus       130 ~F~~  133 (142)
                      +|.+
T Consensus       109 ~F~~  112 (126)
T 2vik_A          109 YFKQ  112 (126)
T ss_dssp             HCSS
T ss_pred             HcCC
Confidence            9974

>3tu5_B Gelsolin, protein cordon-BLeu, thymosin beta-4; unusual hairpin conformation in the D-loop, structural prote binding protein complex; HET: ATP; 3.00A {Homo sapiens}

Probab=98.39  E-value=1.3e-06  Score=69.11  Aligned_cols=90  Identities=22%  Similarity=0.266  Sum_probs=64.8

Q ss_pred             cceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEe------cC---CeEEEEeCCCCCHHHHHHHHHHHHHHHHhh
Q psy555           34 LARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILD------NG---EQVFLWLGSKCSEVEVKLAYKSALVYIQHL  104 (142)
Q Consensus        34 ~~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD------~g---~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~  104 (142)
                      .+-|-+||+.    ++.+..| ..-..-.+.+.||||+=      .+   ..||.|+|+.|+.+|+-.|...|.+.-...
T Consensus        32 ~~Gl~iWrIe----~~~~~~v-~~~~~G~Fy~gd~Yivl~t~~~~~g~~~~~i~~W~G~~ss~de~g~aa~~av~Ld~~l  106 (297)
T 3tu5_B           32 EPGLQIWRVE----KFDLVPV-PTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYL  106 (297)
T ss_dssp             SSEEEEEEEE----TTEEEEC-CGGGTTEEETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             CCceEEEEEc----CCEEEEC-CHHHcCeecCCCeEEEeEeEECCCCceeEEEEEEeCCCCChhHHHHHHHHHHHHHHHc
Confidence            3434448885    3444444 23445668899999872      22   369999999999999999998888855543


Q ss_pred             cCCCCCCCceEEEecCCCCChhhHhhhcC
Q psy555          105 RAKEPERPRKLFLTLKGKESRRFTKCFHA  133 (142)
Q Consensus       105 ~~~~~~~~~~i~~v~eG~Ep~~Fk~~F~~  133 (142)
                      .  +   ...-.++.||+||..|.++|.+
T Consensus       107 g--g---~~vq~Re~Qg~Es~~Fl~~F~~  130 (297)
T 3tu5_B          107 N--G---RAVQHREVQGFESATFLGYFKS  130 (297)
T ss_dssp             T--T---CCEEEEEETTCCCHHHHTTCTT
T ss_pred             C--C---CceEEEEeCCcCCHHHHHHhcc
Confidence            2  1   2445689999999999999974

>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}

Probab=97.22  E-value=0.0015  Score=57.47  Aligned_cols=52  Identities=23%  Similarity=0.473  Sum_probs=37.6

Q ss_pred             cceeeeeEEEcc-CCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCCCHH
Q psy555           34 LARLFGFRCSNE-KGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEV   88 (142)
Q Consensus        34 ~~rL~~f~v~~~-~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~   88 (142)
                      .|+|  |.+++- .......+- .+++.+.|.++.+|+||+|..||+|+|+.+++.
T Consensus       620 yP~L--~~~h~~~~~~~~~P~~-v~ls~~~l~~~giyLlD~g~~i~lw~G~~v~~~  672 (766)
T 3eh2_A          620 YPRL--LPLTKSPVESTTEPPA-VRASEERLSNGDIYLLENGLNLFLWVGASVQQG  672 (766)
T ss_dssp             SCEE--EECSSCCCSCC--CCC-BCSSGGGCCTTCEEEEECSSEEEEEECTTCCHH
T ss_pred             hheE--EEeecCCcccccCCCC-cCCcHHHcCCCcEEEEEcCcEEEEEecCCCCHH
Confidence            6889  877521 111112111 268999999999999999999999999998764

>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B

Probab=96.98  E-value=0.0023  Score=56.35  Aligned_cols=53  Identities=19%  Similarity=0.381  Sum_probs=37.8

Q ss_pred             cceeeeeEEEccCCCe-EEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCCCHHH
Q psy555           34 LARLFGFRCSNEKGYF-TVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVE   89 (142)
Q Consensus        34 ~~rL~~f~v~~~~g~l-~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~e   89 (142)
                      .|+|  |.+.+-.... ...+ ..+++.+.|.++.+|+||+|..||+|+|+.+++.-
T Consensus       624 yP~L--~~~h~l~~~~~~~P~-~v~ls~~~l~~~giyLLD~g~~i~lw~G~~v~~~l  677 (770)
T 3efo_B          624 YPQL--LPIHTLDVKSTMLPA-AVRCSESRLSEEGIFLLANGLHMFLWLGVSSPPEL  677 (770)
T ss_dssp             SCEE--EECTTCCSSSCSCCC-CCCSSGGGCCTTCEEEEECSSEEEEEECTTCCHHH
T ss_pred             ccce--EEEeccccccccCCC-CcCCcHHHcCCCcEEEEECCcEEEEEecCCCCHHH
Confidence            6889  8774211110 1111 12688999999999999999999999999987643

>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A

Probab=96.87  E-value=0.0025  Score=56.36  Aligned_cols=32  Identities=22%  Similarity=0.598  Sum_probs=29.5

Q ss_pred             CCccCCCCCCcEEEEecCCeEEEEeCCCCCHH
Q psy555           57 DFCQDDLADDDMMILDNGEQVFLWLGSKCSEV   88 (142)
Q Consensus        57 ~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~   88 (142)
                      +++.+.|+++.+||||+|..||+|+|+.++++
T Consensus       672 ~Ls~~~l~~~g~yLld~G~~i~lwvg~~~~~~  703 (810)
T 1pcx_A          672 NATSSLFERYGLYLIDNGNELFLWMGGDAVPA  703 (810)
T ss_dssp             CSSTTSCCTTCEEEEECSSEEEEEECTTCCHH
T ss_pred             cCCHHHhCcCCEEEEECCCEEEEEeCCCCCHH
Confidence            78999999999999999999999999998754

>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B

Probab=96.46  E-value=0.0015  Score=57.31  Aligned_cols=32  Identities=19%  Similarity=0.705  Sum_probs=28.9

Q ss_pred             CCccCCCCCCcEEEEecCCeEEEEeCCCCCHH
Q psy555           57 DFCQDDLADDDMMILDNGEQVFLWLGSKCSEV   88 (142)
Q Consensus        57 ~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~   88 (142)
                      +++.+.|.++.+|+||+|..||+|+|+.++++
T Consensus       630 ~ls~~~l~~~giyLlD~g~~i~lw~G~~v~~~  661 (751)
T 3eh1_A          630 KLSAEKLTREGAFLMDCGSVFYIWVGKGCDNN  661 (751)
T ss_dssp             CSSGGGCCTTSEEEEECSSEEEEEECTTCCHH
T ss_pred             cCCHHHcccCCEEEEECCCEEEEEECCCCCHH
Confidence            46888999999999999999999999998753

>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A

Probab=96.14  E-value=0.015  Score=51.17  Aligned_cols=86  Identities=15%  Similarity=0.209  Sum_probs=54.6

Q ss_pred             cceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCCCH--------HH----HHH----HHHHH
Q psy555           34 LARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSE--------VE----VKL----AYKSA   97 (142)
Q Consensus        34 ~~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~--------~e----k~~----a~~~A   97 (142)
                      .|+|  |.++.. |.  .+.+  +++.+.|.++.+||||+|..||||+|+.+..        .+    .+.    ....|
T Consensus       624 yP~L--~~~~~~-~~--P~~v--~ls~~~l~~~gi~LLD~g~~i~i~~G~~v~~w~~~~~~~~p~~~~~~~~l~~p~~~a  696 (769)
T 2nut_A          624 QPIL--YAYSFS-GP--PEPV--LLDSSSILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDA  696 (769)
T ss_dssp             SCEE--EEECSS-SS--CEEC--CSSGGGCCTTCEEEEECSSEEEEEECHHHHHHHHHTTTTSGGGHHHHHHHHHHHHHH
T ss_pred             cCEE--EeccCC-CC--CCce--eCCHHHccCCCEEEEECCCEEEEEECCcchHHHhCCCCCCchhhhHHHHHHhHHHHH
Confidence            5899  877643 32  2233  8999999999999999999999999976532        01    112    23355


Q ss_pred             HHHHHhhcCCCCCCCceEEEecCC-CCChhhHhhh
Q psy555           98 LVYIQHLRAKEPERPRKLFLTLKG-KESRRFTKCF  131 (142)
Q Consensus        98 ~~y~~~~~~~~~~~~~~i~~v~eG-~Ep~~Fk~~F  131 (142)
                      ++++.. +.  |  ...+.++.|| ++..-|.+..
T Consensus       697 ~~i~~~-R~--p--~Pr~i~~~~g~sqaRfl~skl  726 (769)
T 2nut_A          697 QEILHS-RF--P--MPRYIDTEHGGSQARFLLSKV  726 (769)
T ss_dssp             HHHHHH-SS--S--CCEEEEEETTCSTTHHHHHHC
T ss_pred             HHHHhc-CC--C--CCeEEEEcCCCcHHHHHHHhc
Confidence            555443 12  1  2356677776 4555555544

>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*

Probab=96.03  E-value=0.023  Score=49.95  Aligned_cols=46  Identities=13%  Similarity=0.111  Sum_probs=36.5

Q ss_pred             cceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCCC
Q psy555           34 LARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCS   86 (142)
Q Consensus        34 ~~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~   86 (142)
                      .|+|  |.++.. |.  .+.+  +++.+.|.++.+||||+|..||||+|..++
T Consensus       626 yP~L--~~~~~~-~~--P~~v--~Ls~~~l~~~gi~LLD~g~~i~i~~G~~v~  671 (768)
T 1m2o_A          626 QPTL--TSFSME-DD--PQPV--LLDSISVKPNTILLLDTFFFILIYHGEQIA  671 (768)
T ss_dssp             SCEE--EEECSS-SC--CEEC--CSBGGGCCTTCEEEEECSSEEEEEECHHHH
T ss_pred             CCeE--EEecCC-CC--Ccce--eCcHHHcCCCCEEEEECCCEEEEEECCcch
Confidence            6899  877643 32  2233  799999999999999999999999998553

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1

Probab=95.94  E-value=0.02  Score=51.38  Aligned_cols=31  Identities=23%  Similarity=0.617  Sum_probs=28.9

Q ss_pred             CCccCCCCCCcEEEEecCCeEEEEeCCCCCH
Q psy555           57 DFCQDDLADDDMMILDNGEQVFLWLGSKCSE   87 (142)
Q Consensus        57 ~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~   87 (142)
                      +++.+.|+++.+||||+|..||+|+|+.+++
T Consensus       788 ~Ls~~~l~~~g~yLld~G~~i~lWvG~~~~p  818 (926)
T 1m2v_B          788 NATSSLFERYGLYLIDNGNELFLWMGGDAVP  818 (926)
T ss_dssp             CSCSTTCCTTCEEEEECSSEEEEEECTTCCS
T ss_pred             cCcHHHhccCCEEEEECCCEEEEEecCCCCH
Confidence            7899999999999999999999999998773

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	142
d2fh1a3	113	d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapien	2e-25
d1d0na3	121	d.109.1.1 (A:263-383) Gelsolin {Horse (Equus cabal	3e-18
d1j72a3	107	d.109.1.1 (A:241-347) Macrophage capping protein C	3e-17
d1j72a2	116	d.109.1.1 (A:125-240) Macrophage capping protein C	1e-12
d1kcqa_	104	d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [Tax	5e-11
d2fh1a2	96	d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapien	2e-10
d1svya_	102	d.109.1.1 (A:) Severin, domain 2 {Dictyostelium di	1e-09

>d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Gelsolin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.3 bits (226), Expect = 2e-25
 Identities = 37/100 (37%), Positives = 50/100 (50%), Gaps = 3/100 (3%)

Query: 35  ARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAY 94
            RLF   CSN+ G F + E   +  Q+DLA DD+M+LD  +QVF+W+G    E E   A 
Sbjct: 12  PRLF--ACSNKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEKTEAL 69

Query: 95  KSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAW 134
            SA  YI+   A    R   + +  +G E   F   F  W
Sbjct: 70  TSAKRYIETDPANRD-RRTPITVVKQGFEPPSFVGWFLGW 108

>d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} Length = 121

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Gelsolin
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 72.7 bits (178), Expect = 3e-18
 Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 9/107 (8%)

Query: 32  SNLARLFGFRCSNEKGYFTVSEKCTD--FCQDDLADDDMMILDNGE--QVFLWLGSKCSE 87
             LA+L+  + SN  G   VS    +  F Q  L  +D  ILD+G+  ++F+W G + + 
Sbjct: 6   RKLAKLY--KVSNGAGPMVVSLVADENPFAQGALRSEDCFILDHGKDGKIFVWKGKQANM 63

Query: 88  VEVKLAYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAW 134
            E K A K+A  +I      +  +  ++ +  +G E+  F + F  W
Sbjct: 64  EERKAALKTASDFISK---MDYPKQTQVSVLPEGGETPLFRQFFKNW 107

>d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Macrophage capping protein Cap G
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.0 bits (171), Expect = 3e-17
 Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 9/107 (8%)

Query: 32  SNLARLFGFRCSNEKGYFTVSE--KCTDFCQDDLADDDMMILDN--GEQVFLWLGSKCSE 87
           +  A L+  + S+  G   +++    + F  + L  DD  +LDN    ++++W G K +E
Sbjct: 5   AQAAALY--KVSDATGQMNLTKVADSSPFALELLISDDCFVLDNGLCGKIYIWKGRKANE 62

Query: 88  VEVKLAYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAW 134
            E + A + A  +I      +     ++ +  +G+ES  F + F  W
Sbjct: 63  KERQAALQVAEGFISR---MQYAPNTQVEILPQGRESPIFKQFFKDW 106

>d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Macrophage capping protein Cap G
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (141), Expect = 1e-12
 Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 9/100 (9%)

Query: 36  RLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYK 95
           RL+  +    KG   +         D     D  ILD G+ +F W G K + +E   A  
Sbjct: 13  RLY--QV---KGKKNIRATERALNWDSFNTGDCFILDLGQNIFAWCGGKSNILERNKARD 67

Query: 96  SALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWS 135
            A      +R  E +   ++ +   G+E     +      
Sbjct: 68  LA----LAIRDSERQGKAQVEIVTDGEEPAEMIQVLGPKP 103

>d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Gelsolin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (129), Expect = 5e-11
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 9/96 (9%)

Query: 36  RLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYK 95
           RLF  +    KG   V         +   + D  ILD G  +  W GS  +  E   A +
Sbjct: 4   RLF--QV---KGRRVVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQ 58

Query: 96  SALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCF 131
            +    + +R  E     ++ ++ +G E     +  
Sbjct: 59  VS----KGIRDNERSGRARVHVSEEGTEPEAMLQVL 90

>d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Gelsolin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (124), Expect = 2e-10
 Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 4/89 (4%)

Query: 36  RLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYK 95
           RLF  +        T + +        L  +D  +L      +LW+G+  SE E   A +
Sbjct: 5   RLF--QVRANSAGATRAVEV-LPKAGALNSNDAFVLKTPSAAYLWVGTGASEAEKTGAQE 61

Query: 96  SALVYIQHL-RAKEPERPRKLFLTLKGKE 123
              V      +  E   P   +  L GK 
Sbjct: 62  LLRVLRAQPVQVAEGSEPDGFWEALGGKA 90

>d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} Length = 102

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Severin, domain 2
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 49.9 bits (119), Expect = 1e-09
 Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 10/97 (10%)

Query: 36  RLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYK 95
           RL     S +K                L   D  +LD G  ++ + GSK S  E   A +
Sbjct: 5   RLL--HISGDK---NAKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSSPQEKNKAAE 59

Query: 96  SALVYIQHLRAKEPERPRKLFLTLK-GKESRRFTKCF 131
            A    + + A+    P+              F K  
Sbjct: 60  VA----RAIDAERKGLPKVEVFCETDSDIPAEFWKLL 92

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	142
d2fh1a3	113	Gelsolin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1d0na3	121	Gelsolin {Horse (Equus caballus) [TaxId: 9796]}	99.96
d1j72a3	107	Macrophage capping protein Cap G {Human (Homo sapi	99.96
d1kcqa_	104	Gelsolin {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1svya_	102	Severin, domain 2 {Dictyostelium discoideum [TaxId	99.93
d1j72a2	116	Macrophage capping protein Cap G {Human (Homo sapi	99.93
d2fh1a2	96	Gelsolin {Human (Homo sapiens) [TaxId: 9606]}	99.91
d2fh1a1	121	Gelsolin {Human (Homo sapiens) [TaxId: 9606]}	98.92
d1j72a1	114	Macrophage capping protein Cap G {Human (Homo sapi	98.89
d3cipg1	124	Gelsolin {Human (Homo sapiens) [TaxId: 9606]}	98.82
d2vika_	126	Villin, domain 1 (res. 1-126) {Chicken (Gallus gal	98.76
d1pd0a4	173	Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T	97.93
d2qtva4	142	Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T	93.77

>d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Gelsolin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-34  Score=194.93  Aligned_cols=105  Identities=35%  Similarity=0.550  Sum_probs=92.3

Q ss_pred             cCcceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy555           32 SNLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPER  111 (142)
Q Consensus        32 ~~~~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~~~~~~~~  111 (142)
                      ..+|||  |||++.+|.+.+++|..+|+|+||++++|||||+|++||||+|++|+..+|..|+.+|++|+...... ++.
T Consensus         9 ~~~prL--f~~~~~~g~~~~~ev~~~~~q~dL~s~dvfILD~g~~ifvW~G~~a~~~er~~a~~~A~~~~~~~~~~-r~~   85 (113)
T d2fh1a3           9 AHPPRL--FACSNKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEKTEALTSAKRYIETDPAN-RDR   85 (113)
T ss_dssp             -CCCEE--EEEECTTSSCEEEEECSSCCGGGSCTTSEEEEECSSCEEEEECTTCCHHHHHHHHHHHHHHHHTC-------
T ss_pred             CCCCEE--EEEEcCCCCEEEEEEccCCCHHHCCCCceEEEECCCEEEEEeCCCCCHHHHHHHHHHHHHHHhhcccc-CCC
Confidence            458999  99999999999999866899999999999999999999999999999999999999999999865432 334


Q ss_pred             CceEEEecCCCCChhhHhhhcCCCCCCC
Q psy555          112 PRKLFLTLKGKESRRFTKCFHAWSFHKK  139 (142)
Q Consensus       112 ~~~i~~v~eG~Ep~~Fk~~F~~W~~~~~  139 (142)
                      .++|++|.||.||..|+++|++|++++|
T Consensus        86 ~~~i~~v~eG~Ep~~F~~~F~~Wd~~~~  113 (113)
T d2fh1a3          86 RTPITVVKQGFEPPSFVGWFLGWDDDYW  113 (113)
T ss_dssp             -CCEEEEETTCCCHHHHTTSSSCCTTCC
T ss_pred             CCcEEEEeCCCCCHHHhcccCCCCCCCC
Confidence            6899999999999999999999999875

>d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Gelsolin
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.96  E-value=6.6e-30  Score=177.27  Aligned_cols=103  Identities=29%  Similarity=0.513  Sum_probs=92.2

Q ss_pred             cCcceeeeeEEEccCCCeEEEEeec--CCccCCCCCCcEEEEecCCe--EEEEeCCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy555           32 SNLARLFGFRCSNEKGYFTVSEKCT--DFCQDDLADDDMMILDNGEQ--VFLWLGSKCSEVEVKLAYKSALVYIQHLRAK  107 (142)
Q Consensus        32 ~~~~rL~~f~v~~~~g~l~v~ev~~--~~~q~~L~s~~vfILD~g~~--IyvW~G~~a~~~ek~~a~~~A~~y~~~~~~~  107 (142)
                      .+.+||  |||++.+|.+.+.+|..  |++|++|++++|||||++.+  ||||+|++|+..||..|+.+|++|+.+..  
T Consensus         6 ~~~~rL--y~vs~~~G~~~~~~v~~~~p~~~s~L~s~dvfILD~~~e~~IyvW~G~~ss~~ek~~A~~~A~~~~~~~~--   81 (121)
T d1d0na3           6 RKLAKL--YKVSNGAGPMVVSLVADENPFAQGALRSEDCFILDHGKDGKIFVWKGKQANMEERKAALKTASDFISKMD--   81 (121)
T ss_dssp             CCCCEE--EEEECSSSSCEEEEEESSSSBCGGGCCTTSEEEEEEGGGTEEEEEECTTSCHHHHTTHHHHHHHHHHHTT--
T ss_pred             ccCCEE--EEEECCCCCEEEEEEccCCCcCHHHCCCCCEEEEeeCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHhhc--
Confidence            457899  99999999999999863  79999999999999999864  99999999999999999999999998742  


Q ss_pred             CCCCCceEEEecCCCCChhhHhhhcCCCCCCC
Q psy555          108 EPERPRKLFLTLKGKESRRFTKCFHAWSFHKK  139 (142)
Q Consensus       108 ~~~~~~~i~~v~eG~Ep~~Fk~~F~~W~~~~~  139 (142)
                       ++..++|++|.||.||..|+++|.+|++.+.
T Consensus        82 -~~~~~~v~~v~eG~Ep~~F~~~F~~W~~~~~  112 (121)
T d1d0na3          82 -YPKQTQVSVLPEGGETPLFRQFFKNWRDPDQ  112 (121)
T ss_dssp             -CCTTCEEEEEETTCCCHHHHTTBTTCCCTTC
T ss_pred             -CCCCCeEEEEcCCCCCHHHhhhccCCCCCcc
Confidence             3347999999999999999999999987643

>d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Macrophage capping protein Cap G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.6e-29  Score=171.54  Aligned_cols=99  Identities=26%  Similarity=0.538  Sum_probs=89.6

Q ss_pred             cCcceeeeeEEEccCCCeEEEEee--cCCccCCCCCCcEEEEecC--CeEEEEeCCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy555           32 SNLARLFGFRCSNEKGYFTVSEKC--TDFCQDDLADDDMMILDNG--EQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAK  107 (142)
Q Consensus        32 ~~~~rL~~f~v~~~~g~l~v~ev~--~~~~q~~L~s~~vfILD~g--~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~~~~  107 (142)
                      ...+||  |||++.+|.+.+++|.  .|++|++|++++|||||++  .+||||+|++|+..||..|+.+|++|++..+. 
T Consensus         5 ~~~~~L--y~vs~~~G~~~~~~v~~~~p~~~~~L~s~dvfILD~~~~~~iyvW~G~~s~~~ek~~a~~~A~~~~~~~~~-   81 (107)
T d1j72a3           5 AQAAAL--YKVSDATGQMNLTKVADSSPFALELLISDDCFVLDNGLCGKIYIWKGRKANEKERQAALQVAEGFISRMQY-   81 (107)
T ss_dssp             SCCCEE--EEEECTTSSCEEEEEECSSSBCGGGCCTTSEEEEECGGGSEEEEEECTTCCHHHHHHHHHHHHHHHHHHTC-
T ss_pred             CCCCEE--EEEECCCCCEEEEEEecCCccCHHHCCCCCEEEEeccCCCEEEEEECCCCCHHHHHHHHHHHHHHHHhcCC-
Confidence            457899  9999999999999985  3799999999999999997  46999999999999999999999999987532 


Q ss_pred             CCCCCceEEEecCCCCChhhHhhhcCCC
Q psy555          108 EPERPRKLFLTLKGKESRRFTKCFHAWS  135 (142)
Q Consensus       108 ~~~~~~~i~~v~eG~Ep~~Fk~~F~~W~  135 (142)
                        +.+++|.+|.||.||..|+++|++|.
T Consensus        82 --~~~~~v~~v~eG~Ep~~F~~~F~~W~  107 (107)
T d1j72a3          82 --APNTQVEILPQGRESPIFKQFFKDWK  107 (107)
T ss_dssp             --CTTCEEEEEETTCCCTTTCCBSTTCC
T ss_pred             --CCCCcEEEEeCCCCCHHHHhhCcCCC
Confidence              34699999999999999999999994

>d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Gelsolin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.3e-25  Score=151.66  Aligned_cols=97  Identities=16%  Similarity=0.244  Sum_probs=85.3

Q ss_pred             cceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCc
Q psy555           34 LARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERPR  113 (142)
Q Consensus        34 ~~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~~~~~~~~~~  113 (142)
                      ..||  |||++. +.+.+.||  ++++++|++++|||||++++||||+|++|+..||..|+.+|+.+....    +...+
T Consensus         2 ~~RL--y~v~G~-~~i~~~eV--~~~~~~L~s~dvfILd~~~~iyvW~G~~s~~~ek~~a~~~a~~l~~~~----~~~~~   72 (104)
T d1kcqa_           2 VQRL--FQVKGR-RVVRATEV--PVSWESFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKGIRDNE----RSGRA   72 (104)
T ss_dssp             CCEE--EEEEES-SSEEEEEE--CSSGGGCCTTSEEEEECSSEEEEEECTTCCHHHHHHHHHHHHHHHHHT----STTCS
T ss_pred             eeEE--EEEECC-CcEEEEEe--CCCHHHcCCCCeEEEEcCCeEEEEECCcCCHHHHHHHHHHHHHHHhcC----CCCCc
Confidence            3689  999874 68899998  999999999999999999999999999999999999999998866552    22358


Q ss_pred             eEEEecCCCCChhhHhhhcCCCCCCC
Q psy555          114 KLFLTLKGKESRRFTKCFHAWSFHKK  139 (142)
Q Consensus       114 ~i~~v~eG~Ep~~Fk~~F~~W~~~~~  139 (142)
                      +|.+|.||.||.+|+.+|.+++..+.
T Consensus        73 ~i~~v~eG~E~~~F~~~lGg~~~~~~   98 (104)
T d1kcqa_          73 RVHVSEEGTEPEAMLQVLGPKPALPA   98 (104)
T ss_dssp             EEEEEETTCCCHHHHHHHCSCCCCCC
T ss_pred             eEEEEeCCCChHHHHHHhCCCCCCCC
Confidence            89999999999999999998876543

>d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Severin, domain 2
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.93  E-value=6.8e-26  Score=152.27  Aligned_cols=98  Identities=20%  Similarity=0.181  Sum_probs=85.4

Q ss_pred             CcceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy555           33 NLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERP  112 (142)
Q Consensus        33 ~~~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~~~~~~~~~  112 (142)
                      .+|||  |||++ ++.+.+.||  ++++++|+++||||||++++||||+|++|+..||..|+++|+.|....+   ....
T Consensus         2 ~~pRL--~~v~G-~~~~~~~ev--~~~~~~L~s~dvfILd~~~~iyvW~G~~s~~~er~~a~~~A~~~~~~~~---~~~~   73 (102)
T d1svya_           2 YKPRL--LHISG-DKNAKVAEV--PLATSSLNSGDCFLLDAGLTIYQFNGSKSSPQEKNKAAEVARAIDAERK---GLPK   73 (102)
T ss_dssp             CSCEE--EEEEC-TTSCEEEEE--CSSGGGCBTTSEEEEECSSEEEEEECTTCCHHHHHHHHHHHHHHHHHTT---TCSE
T ss_pred             CCcEE--EEEEC-CCceEEEEe--cCCHHHcCCCCeEEEEcCCEEEEEECCCCCHHHHHHHHHHHHHHHhccC---CCCC
Confidence            36999  99986 468999998  9999999999999999999999999999999999999999988765432   2235


Q ss_pred             ceEEEecCCCCChhhHhhhcCCCCCC
Q psy555          113 RKLFLTLKGKESRRFTKCFHAWSFHK  138 (142)
Q Consensus       113 ~~i~~v~eG~Ep~~Fk~~F~~W~~~~  138 (142)
                      ++|..+.||.||.+|+.+|.+.....
T Consensus        74 ~~i~~~~eg~E~~~F~~~~Ggk~~~~   99 (102)
T d1svya_          74 VEVFCETDSDIPAEFWKLLGGKGAIA   99 (102)
T ss_dssp             EEEEETTCSCCCHHHHHHTTSCCCCB
T ss_pred             ceEEEecCCCCCHHHHHHcCCCCCCC
Confidence            78888999999999999999876643

>d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Macrophage capping protein Cap G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.9e-25  Score=151.96  Aligned_cols=98  Identities=20%  Similarity=0.319  Sum_probs=86.8

Q ss_pred             cCcceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy555           32 SNLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPER  111 (142)
Q Consensus        32 ~~~~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~~~~~~~~  111 (142)
                      ...+||  |||++. +.+.+.+|  ++++++|++++|||||++++||||+|++|+..||..|+.+|+.|....    +..
T Consensus         9 ~~~~rL--~~v~G~-~~~~~~eV--~~~~~sL~s~dvfILd~~~~iyvW~G~~ss~~ek~~a~~~a~~~~~~~----~~~   79 (116)
T d1j72a2           9 VVVQRL--YQVKGK-KNIRATER--ALNWDSFNTGDCFILDLGQNIFAWCGGKSNILERNKARDLALAIRDSE----RQG   79 (116)
T ss_dssp             CEEEEE--EEEECS-SSCEEEEE--CSSGGGCBTTSEEEEEETTEEEEEECTTCCHHHHHHHHHHHHHHHTTS----CCS
T ss_pred             CCCcEE--EEEECC-CceEEEEe--CCCHHHcCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHhcc----CCC
Confidence            357899  999875 58899998  999999999999999999999999999999999999999999987652    223


Q ss_pred             CceEEEecCCCCChhhHhhhcCCCCCC
Q psy555          112 PRKLFLTLKGKESRRFTKCFHAWSFHK  138 (142)
Q Consensus       112 ~~~i~~v~eG~Ep~~Fk~~F~~W~~~~  138 (142)
                      .++|++|.||.||.+|+.+|.++...+
T Consensus        80 ~~~v~~v~eG~E~~~F~~~lGg~~~~~  106 (116)
T d1j72a2          80 KAQVEIVTDGEEPAEMIQVLGPKPALK  106 (116)
T ss_dssp             SCEEEEEETTCCCHHHHHHHCSCCCCB
T ss_pred             CCcEEEEECCCChHHHHHHhCCCCCCC
Confidence            589999999999999999999887654

>d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Gelsolin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.1e-24  Score=143.03  Aligned_cols=91  Identities=21%  Similarity=0.254  Sum_probs=79.3

Q ss_pred             CcceeeeeEEEc-cCCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy555           33 NLARLFGFRCSN-EKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPER  111 (142)
Q Consensus        33 ~~~rL~~f~v~~-~~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~~~~~~~~  111 (142)
                      ..+||  |||.. ..+.+++.||  ++++++|+++||||||+++.||||+|++|+..||..|+++|+.|           
T Consensus         2 ~~~RL--f~v~g~~~~~~~~~EV--~~~~ssLns~d~fILd~~~~iyvW~G~~s~~~er~~a~~~a~~~-----------   66 (96)
T d2fh1a2           2 ASTRL--FQVRANSAGATRAVEV--LPKAGALNSNDAFVLKTPSAAYLWVGTGASEAEKTGAQELLRVL-----------   66 (96)
T ss_dssp             CSSEE--EEEEECTTCCEEEEEE--CCSGGGCBTTSEEEEECSSCEEEEECTTCCHHHHHHHHHHHHHT-----------
T ss_pred             CCcEE--EEEECCCCCeEEEEEe--CCCHHHhCCCCeEEEECCCEEEEEECCCCCHHHHHHHHHHHHHh-----------
Confidence            36899  99974 4456788888  99999999999999999999999999999999999999999764           


Q ss_pred             CceEEEecCCCCChhhHhhhcCCCCCC
Q psy555          112 PRKLFLTLKGKESRRFTKCFHAWSFHK  138 (142)
Q Consensus       112 ~~~i~~v~eG~Ep~~Fk~~F~~W~~~~  138 (142)
                      .+++.+|.||.||.+||..+.+..+..
T Consensus        67 ~~~~~~v~EG~E~~~Fw~~LGGk~~Y~   93 (96)
T d2fh1a2          67 RAQPVQVAEGSEPDGFWEALGGKAAYR   93 (96)
T ss_dssp             TCCCEEEETTCCCHHHHHHTTSCCCCB
T ss_pred             cCCeEEEECCCCCHHHHHHcCCCccCC
Confidence            145678999999999999999876643

>d2fh1a1 d.109.1.1 (A:412-532) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Gelsolin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=4.3e-09  Score=71.51  Aligned_cols=88  Identities=15%  Similarity=0.208  Sum_probs=64.0

Q ss_pred             cceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEe-----cC---CeEEEEeCCCCCHHHHHHHHHHHHHHHHhhc
Q psy555           34 LARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILD-----NG---EQVFLWLGSKCSEVEVKLAYKSALVYIQHLR  105 (142)
Q Consensus        34 ~~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD-----~g---~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~~  105 (142)
                      ...+  ||+.+.    ...++ .+-.+..|.+.+|||+-     .+   ..||.|+|++|+.+++..|...|.++-....
T Consensus         8 ~~~V--WrI~~~----~~~~v-p~~~~G~Fy~gd~Yiv~~~y~~~g~~~~~iy~W~G~~ss~~e~~~aa~~a~eld~~l~   80 (121)
T d2fh1a1           8 QKQI--WRIEGS----NKVPV-DPATYGQFYGGDSYIILYNYRHGGRQGQIIYNWQGAQSTQDEVAASAILTAQLDEELG   80 (121)
T ss_dssp             EEEE--EEEETT----EEEEC-CGGGTTEEETTSEEEEEEEEEETTEEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             cEEE--EEEeCC----EEeEC-CcccccEEeCCCeEEEEEEEEcCCCceEEEEEEECCCCCHHHHHHHHHHHHHHHHHcC
Confidence            3456  888532    23333 13455668999999993     33   3599999999999999999989988655432


Q ss_pred             CCCCCCCceEEEecCCCCChhhHhhhcC
Q psy555          106 AKEPERPRKLFLTLKGKESRRFTKCFHA  133 (142)
Q Consensus       106 ~~~~~~~~~i~~v~eG~Ep~~Fk~~F~~  133 (142)
                        .   .+...++.||.||..|.++|.+
T Consensus        81 --g---~~vq~R~~QG~Ep~~Fl~~F~g  103 (121)
T d2fh1a1          81 --G---TPVQSRVVQGKEPAHLMSLFGG  103 (121)
T ss_dssp             --S---CSEEEEEETTCCCHHHHGGGTT
T ss_pred             --C---CceEEeccCCCCCHHHHHHhCC
Confidence              1   2344589999999999999963

>d1j72a1 d.109.1.1 (A:11-124) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Macrophage capping protein Cap G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=8.3e-09  Score=69.35  Aligned_cols=90  Identities=18%  Similarity=0.161  Sum_probs=65.2

Q ss_pred             cceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEecC-----CeEEEEeCCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy555           34 LARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNG-----EQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKE  108 (142)
Q Consensus        34 ~~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~g-----~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~~~~~  108 (142)
                      .|.|-+||+.+.    ...++ .+-..-.+.+.||||+-..     ..||.|+|++|+.+++-.|...|.+.-....  +
T Consensus         8 ~~Gl~VWrIe~~----~~~~v-~~~~~G~Fy~gd~Yivl~~y~~~~~~i~fW~G~~ss~de~g~aa~~~veLd~~l~--g   80 (114)
T d1j72a1           8 DPGLHVWRVEKL----KPVPV-AQENQGVFFSGDSYLVLHNGPEEVSHLHLWIGQQSSRDEQGACAVLAVQLDDYLG--G   80 (114)
T ss_dssp             SSEEEEEEECSS----SEEEC-CTTTTTEEETTSEEEEEEECSSSCEEEEEEECTTSCHHHHHHHHHHHHHHHHHTT--T
T ss_pred             cCCeEEEEEcCC----EEEEC-ChHHcCeeeCCCEEEEEEecCCcceEEEEEEcCCCCHHHHHHHHHHHHHHHHHhC--C
Confidence            344444887532    22233 2334556889999999442     3799999999999999988888888665532  1


Q ss_pred             CCCCceEEEecCCCCChhhHhhhcC
Q psy555          109 PERPRKLFLTLKGKESRRFTKCFHA  133 (142)
Q Consensus       109 ~~~~~~i~~v~eG~Ep~~Fk~~F~~  133 (142)
                         .+...++.||+||..|.++|.+
T Consensus        81 ---~~vq~R~~Qg~E~~~Fl~lF~~  102 (114)
T d1j72a1          81 ---RPVQHREVQGNESDLFMSYFPR  102 (114)
T ss_dssp             ---CSEEEEEETTSCCHHHHTTCSS
T ss_pred             ---CccEEEEECCCCCHHHHHHhCC
Confidence               3566799999999999999974

>d3cipg1 d.109.1.1 (G:2-125) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Gelsolin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1e-08  Score=69.85  Aligned_cols=85  Identities=22%  Similarity=0.303  Sum_probs=64.6

Q ss_pred             eEEEccCCCeEEEEeecCCccCCCCCCcEEEE-----e-cC---CeEEEEeCCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy555           40 FRCSNEKGYFTVSEKCTDFCQDDLADDDMMIL-----D-NG---EQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPE  110 (142)
Q Consensus        40 f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfIL-----D-~g---~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~~~~~~~  110 (142)
                      ||+.+    +...+| .+-....+.+.||||+     + .+   ..||.|.|++|+.+++..|...|.++-....  +  
T Consensus        19 WrIe~----~~~~~v-p~~~~G~Fy~gd~YIil~ty~~~~g~~~~~iy~W~G~~ss~~e~~~aa~~aveLd~~l~--g--   89 (124)
T d3cipg1          19 WRVEK----FDLVPV-PTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLN--G--   89 (124)
T ss_dssp             EEEET----TEEEEC-CGGGTTEEETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTT--T--
T ss_pred             EEEeC----CEEEEC-CHHHccEEeCCCEEEEEEEEEcCCCCEeEEEEEEECCCCChhHHHHHHHHHHHHHHHcC--C--
Confidence            88863    233344 2345667899999998     3 33   3699999999999999999999988666532  1  


Q ss_pred             CCceEEEecCCCCChhhHhhhcCC
Q psy555          111 RPRKLFLTLKGKESRRFTKCFHAW  134 (142)
Q Consensus       111 ~~~~i~~v~eG~Ep~~Fk~~F~~W  134 (142)
                       .+...++.||+||..|.++|.+.
T Consensus        90 -~~vq~R~~Qg~Ep~~Fl~lF~~~  112 (124)
T d3cipg1          90 -RAVQHREVQGFESATFLGYFKSG  112 (124)
T ss_dssp             -CEEEEEEETTCCCHHHHTTCTTC
T ss_pred             -CccEEEEecCCCCHHHHHHhCCC
Confidence             25567899999999999999865

>d2vika_ d.109.1.1 (A:) Villin, domain 1 (res. 1-126) {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Villin, domain 1 (res. 1-126)
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.76  E-value=1e-08  Score=70.07  Aligned_cols=89  Identities=18%  Similarity=0.201  Sum_probs=65.1

Q ss_pred             ceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEec-----C---CeEEEEeCCCCCHHHHHHHHHHHHHHHHhhcC
Q psy555           35 ARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDN-----G---EQVFLWLGSKCSEVEVKLAYKSALVYIQHLRA  106 (142)
Q Consensus        35 ~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~-----g---~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~~~  106 (142)
                      |.|-+|++.+.. ..   ++ .+-....+.++||||+-.     +   ..||.|+|++|+.+++..|...|.+.-...+ 
T Consensus        16 ~gl~VWrIe~~~-~~---~v-p~~~~G~Fysgd~Yivl~ty~~~~~~~~~iy~W~G~~ss~~e~~~aa~~a~eLd~~l~-   89 (126)
T d2vika_          16 PGIQIWRIENME-MV---PV-PTKSYGNFYEGDCYVLLSTRKTGSGFSYNIHYWLGKNSSQDEQGAAAIYTTQMDEYLG-   89 (126)
T ss_dssp             CEEEEEECGGGS-CC---EE-CTTTTTCCCSSSCEEEEEEEECSSSEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTT-
T ss_pred             CCEEEEEEeCCE-EE---EC-ChHHcCEEeCCCEEEEEEEEEcCCCcEEEEEEEecCCCCHHHHHHHHHHHHHHHHHcC-
Confidence            444338775322 22   23 234566799999999843     2   3699999999999999999999998765532 


Q ss_pred             CCCCCCceEEEecCCCCChhhHhhhcC
Q psy555          107 KEPERPRKLFLTLKGKESRRFTKCFHA  133 (142)
Q Consensus       107 ~~~~~~~~i~~v~eG~Ep~~Fk~~F~~  133 (142)
                       +   .+...++.||+||..|.++|.+
T Consensus        90 -g---~~vq~R~~Qg~Ep~~Fl~lF~g  112 (126)
T d2vika_          90 -S---VAVQHREVQGHESETFRAYFKQ  112 (126)
T ss_dssp             -S---CSCEEEEETTTSHHHHHHHCSS
T ss_pred             -C---CcEEEEEEcCcCCHHHHHHcCC
Confidence             1   2455789999999999999974

>d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: C-terminal, gelsolin-like domain of Sec23/24
family: C-terminal, gelsolin-like domain of Sec23/24
domain: Sec24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.93  E-value=3.5e-06  Score=59.69  Aligned_cols=32  Identities=22%  Similarity=0.598  Sum_probs=30.0

Q ss_pred             CCccCCCCCCcEEEEecCCeEEEEeCCCCCHH
Q psy555           57 DFCQDDLADDDMMILDNGEQVFLWLGSKCSEV   88 (142)
Q Consensus        57 ~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~   88 (142)
                      +++.+.|.++.||+||+|..+|+|+|+.+++.
T Consensus        35 ~lS~e~l~~~G~YLld~G~~~~LwvG~~v~p~   66 (173)
T d1pd0a4          35 NATSSLFERYGLYLIDNGNELFLWMGGDAVPA   66 (173)
T ss_dssp             CSSGGGCCTTCEEEEECSSCEEEEECTTCCHH
T ss_pred             cchHHHccCCCEEEEECCCEEEEEECCCCCHH
Confidence            79999999999999999999999999998764

>d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: C-terminal, gelsolin-like domain of Sec23/24
family: C-terminal, gelsolin-like domain of Sec23/24
domain: Sec23
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.77  E-value=0.17  Score=33.92  Aligned_cols=82  Identities=15%  Similarity=0.118  Sum_probs=51.3

Q ss_pred             ceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCCCH----------------HHHHHHHHHHH
Q psy555           35 ARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSE----------------VEVKLAYKSAL   98 (142)
Q Consensus        35 ~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~----------------~ek~~a~~~A~   98 (142)
                      |.|  +..+-++ .  .+.|  .+...+|.++.+.|||++..|.||.|.....                +.-.....-|+
T Consensus         1 PtL--~sy~~~~-~--p~pV--lLDs~Si~~D~ILLLDtfF~V~I~~G~~Ia~Wrkagy~~~pey~~fk~lLeap~~dA~   73 (142)
T d2qtva4           1 PTL--TSFSMED-D--PQPV--LLDSISVKPNTILLLDTFFFILIYHGEQIAQWRKAGYQDDPQYADFKALLEEPKLEAA   73 (142)
T ss_dssp             CEE--EEECSSS-C--CEEC--CSBGGGCCTTCEEEEECSSEEEEEECHHHHHHHHHTGGGSTTTTHHHHHHHHHHHHHH
T ss_pred             Cce--EEecCCC-C--Ccee--ecchhhcCCCeEEEEcCCCEEEEEeCcHHHHHHHcCCccChhHHHHHHHHHhHHHHHH
Confidence            456  5554332 2  3445  7999999999999999999999999965321                12233445555


Q ss_pred             HHHHhhcCCCCCCCceEEEecCCCCChhhH
Q psy555           99 VYIQHLRAKEPERPRKLFLTLKGKESRRFT  128 (142)
Q Consensus        99 ~y~~~~~~~~~~~~~~i~~v~eG~Ep~~Fk  128 (142)
                      +++.. ++    .-..+.+..+|.--.-|.
T Consensus        74 ~ll~~-Rf----P~Pr~i~~~qggSQARfL   98 (142)
T d2qtva4          74 ELLVD-RF----PLPRFIDTEAGGSQARFL   98 (142)
T ss_dssp             HHHTT-CS----SCCEEEEEETTCGGGHHH
T ss_pred             HHHHc-cC----CCCeEEEecCCCcHHHHH
Confidence            55443 22    134567777776555443