Psyllid ID: psy559

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370------
MVSRMCSNFLAASKVYDKQSVRTMAFVMPKLKEVYTKAKYGGRNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSIRRNGVAIKGNIETGSLDSLWTLKLCRLILRVIAMMILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINEDKIHTPDLGGTATSIDVVQNIIKLVQTNDLRHHVNL
cccHHHHHHHHHHccccHHHHHHHHHcccccHHcccccccccEEEEEEEcccccHHHHHHHHHHHHHHccccEEEEEEEccccccccccHHHHHHHHHHccEEEEcccccccccccccHHHHHHHHHHHcccccccccccccccEEEEEccccccccccEEEEcccEEEEEEEccHHHHHHHHHHHHHHHHHccccEEEEEEccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccEEEcccccHHHHHHHHHHHHcccccccccccccccEEEccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccccccccc
cHHHHHHHHHHHHcHcccHHHHHHHccccccccccccHHccccEEEEEEccccccHHHHHHHHHHHHHccccEEEEEEEEcccccccccHHHHHHHHHHcccEEEccccccccccccEEEEEEEEEEEEEccccccccccccccEEEEEEcccccccccEEEccccEEEEEEEEcHHHHHHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHHHHccccEEEEEEHHHHHHHHHHcHHHccEEEEcHHHHHHHHHHHHHHHccHHHcccEEEccccEEEccccccccHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcccccccc
MVSRMCSNFLAASKVYDKQSVRTMAFVMPKLKEVYTKakyggrnavtmlpgggigpELMSYVKEVFRyagvpvdfetvqidpksdsnddLEYAITSIRRngvaikgnietgsldslWTLKLCRLILRVIAMMILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVakeypeiehndmiidntcmqlvsnpkqfdvmvmpNLYGAITSNVICGLIggaglisgknygdhyavfepgtrntgtaiagknianpIAMLNASVDMLEHLGHMKHASIIKLAIEKTinedkihtpdlggtatSIDVVQNIIKLVQtndlrhhvnl
mvsrmcsnflaaskvydkqsvrTMAFVMPKLKEvytkakyggrnaVTMLPGGGIGPELMSYVKEVFRYAGVPVDFEtvqidpksdsnddLEYAITSirrngvaikgnietgsldslwTLKLCRLILRVIAMMILSVRCRQQGIDIVIVRQNTEGEYAMLEhesvdgvvESMKIITAANSYRLSKYAFEYAKKfgrkkvttvhkanimkisdglflEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINEDKIHTPDLGGTATSIDVVQNIIKLvqtndlrhhvnl
MVSRMCSNFLAASKVYDKQSVRTMAFVMPKLKEVYTKAKYGGRNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSIRRNGVAIKGNIETGSLDSLWTLKLCRLILRVIAMMILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINEDKIHTPDLGGTATSIDVVQNIIKLVQTNDLRHHVNL
******SNFLAASKVYDKQSVRTMAFVMPKLKEVYTKAKYGGRNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQID*******DLEYAITSIRRNGVAIKGNIETGSLDSLWTLKLCRLILRVIAMMILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINEDKIHTPDLGGTATSIDVVQNIIKLVQTND*******
*******************************************NAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSIRRNGVAIKGNIETGSLDSLWTLKLCRLILRVIAMMILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINEDKIHTPDLGGTATSIDVVQNIIKLVQT*********
MVSRMCSNFLAASKVYDKQSVRTMAFVMPKLKEVYTKAKYGGRNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSIRRNGVAIKGNIETGSLDSLWTLKLCRLILRVIAMMILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINEDKIHTPDLGGTATSIDVVQNIIKLVQTNDLRHHVNL
*******************************KEVYTKAKYGGRNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSIRRNGVAIKGNIETGSLDSLWTLKLCRLILRVIAMMILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINEDKIHTPDLGGTATSIDVVQNIIKLVQTNDL******
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SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVSRMCSNFLAASKVYDKQSVRTMAFVMPKLKEVYTKAKYGGRNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSIRRNGVAIKGNIETGSLDSLWTLKLCRLILRVIAMMILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINEDKIHTPDLGGTATSIDVVQNIIKLVQTNDLRHHVNL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query376 2.2.26 [Sep-21-2011]
P70404393 Isocitrate dehydrogenase yes N/A 0.901 0.862 0.514 1e-100
P41564355 Isocitrate dehydrogenase N/A N/A 0.851 0.901 0.542 1e-100
Q58CP0392 Isocitrate dehydrogenase yes N/A 0.851 0.816 0.542 1e-100
P51553393 Isocitrate dehydrogenase yes N/A 0.851 0.814 0.539 1e-100
P41565393 Isocitrate dehydrogenase yes N/A 0.851 0.814 0.542 1e-100
Q8BPC6396 Probable isocitrate dehyd no N/A 0.893 0.848 0.489 1e-87
Q4QQT5395 Probable isocitrate dehyd no N/A 0.859 0.817 0.5 8e-87
O43837385 Isocitrate dehydrogenase no N/A 0.864 0.844 0.486 9e-81
O77784385 Isocitrate dehydrogenase no N/A 0.851 0.831 0.481 1e-79
Q28479385 Isocitrate dehydrogenase N/A N/A 0.851 0.831 0.484 1e-79
>sp|P70404|IDHG1_MOUSE Isocitrate dehydrogenase [NAD] subunit gamma 1, mitochondrial OS=Mus musculus GN=Idh3g PE=1 SV=1 Back     alignment and function desciption
 Score =  366 bits (940), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/371 (51%), Positives = 251/371 (67%), Gaps = 32/371 (8%)

Query: 12  ASKVYDKQSVRTMAFVMPKLKEVYTKAKYGGRNAVTMLPGGGIGPELMSYVKEVFRYAGV 71
           A+ V  ++S+ +   + P        AKYGGR+ VTM+PG GIGPELM +VK VFR+A V
Sbjct: 30  AAHVAPRRSISSQQTIPPS-------AKYGGRHTVTMIPGDGIGPELMLHVKSVFRHACV 82

Query: 72  PVDFETVQIDPKSDSNDDLEYAITSIRRNGVAIKGNIETG----------------SLDS 115
           PVDFE V +   +D  +D+  AI +IRRN VA+KGNIET                 SLD 
Sbjct: 83  PVDFEEVHVSSNADE-EDIRNAIMAIRRNRVALKGNIETNHNLPPSHKSRNNILRTSLDL 141

Query: 116 LWTLKLCRLILRVIAMMILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIIT 175
              +  C+ +  V+         R + IDI+IVR+NTEGEY+ LEHESV GVVES+KIIT
Sbjct: 142 YANVIHCKSLPGVVT--------RHKDIDILIVRENTEGEYSSLEHESVAGVVESLKIIT 193

Query: 176 AANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMII 235
            A S R+++YAF+ A++ GRKKVT VHKANIMK+ DGLFL+  R+VA  YP+I  + MI+
Sbjct: 194 KAKSLRIAEYAFKLAQESGRKKVTAVHKANIMKLGDGLFLQCCREVAAHYPQITFDSMIV 253

Query: 236 DNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNT 295
           DNT MQLVS P+QFDVMVMPNLYG I +NV  GL+GG GL++G NYG  YAVFE  TRNT
Sbjct: 254 DNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYGHVYAVFETATRNT 313

Query: 296 GTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINEDKIHTPDLGGTATSI 355
           G +IA KNIANP A L AS  ML+HL    +A+ I+ A+  +++ + +HTPD+GG  T+ 
Sbjct: 314 GKSIANKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNENMHTPDIGGQGTTS 373

Query: 356 DVVQNIIKLVQ 366
             +Q+II+ ++
Sbjct: 374 QAIQDIIRHIR 384

Mus musculus (taxid: 10090)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 1
>sp|P41564|IDH3G_MACFA Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial (Fragment) OS=Macaca fascicularis GN=IDH3G PE=2 SV=1 Back     alignment and function description
>sp|Q58CP0|IDH3G_BOVIN Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial OS=Bos taurus GN=IDH3G PE=2 SV=1 Back     alignment and function description
>sp|P51553|IDH3G_HUMAN Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial OS=Homo sapiens GN=IDH3G PE=1 SV=1 Back     alignment and function description
>sp|P41565|IDHG1_RAT Isocitrate dehydrogenase [NAD] subunit gamma 1, mitochondrial OS=Rattus norvegicus GN=Idh3g PE=2 SV=2 Back     alignment and function description
>sp|Q8BPC6|IDHG2_MOUSE Probable isocitrate dehydrogenase [NAD] gamma 2, mitochondrial OS=Mus musculus PE=1 SV=1 Back     alignment and function description
>sp|Q4QQT5|IDHG2_RAT Probable isocitrate dehydrogenase [NAD] gamma 2, mitochondrial OS=Rattus norvegicus PE=2 SV=1 Back     alignment and function description
>sp|O43837|IDH3B_HUMAN Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial OS=Homo sapiens GN=IDH3B PE=1 SV=2 Back     alignment and function description
>sp|O77784|IDH3B_BOVIN Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial OS=Bos taurus GN=IDH3B PE=2 SV=2 Back     alignment and function description
>sp|Q28479|IDH3B_MACFA Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial OS=Macaca fascicularis GN=IDH3B PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query376
189237290360 PREDICTED: similar to isocitrate dehydro 0.877 0.916 0.713 1e-138
270007569384 hypothetical protein TcasGA2_TC014166 [T 0.890 0.872 0.706 1e-137
332375801387 unknown [Dendroctonus ponderosae] 0.882 0.857 0.690 1e-136
347967349384 AGAP002192-PA [Anopheles gambiae str. PE 0.938 0.919 0.636 1e-134
347967347393 AGAP002192-PB [Anopheles gambiae str. PE 0.938 0.898 0.636 1e-134
194743780402 GF16768 [Drosophila ananassae] gi|190627 0.869 0.813 0.672 1e-133
157127515393 isocitrate dehydrogenase [Aedes aegypti] 0.904 0.865 0.66 1e-132
170047197387 isocitrate dehydrogenase [Culex quinquef 0.877 0.852 0.681 1e-132
157127521384 isocitrate dehydrogenase [Aedes aegypti] 0.877 0.859 0.672 1e-132
193587197386 PREDICTED: isocitrate dehydrogenase [NAD 0.880 0.857 0.680 1e-132
>gi|189237290|ref|XP_974070.2| PREDICTED: similar to isocitrate dehydrogenase [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 244/342 (71%), Positives = 282/342 (82%), Gaps = 12/342 (3%)

Query: 38  AKYGGRNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSI 97
           A YGGR+ VTMLPGGGIGPELM YVKEVF+YAG PVDFE V I    D N DL+YA+TSI
Sbjct: 22  AMYGGRHHVTMLPGGGIGPELMGYVKEVFKYAGAPVDFEVVDI---GDENSDLDYALTSI 78

Query: 98  RRNGVAIKGNIETGSLDSLWTLKLCRLILRVIAMMILSVRC--------RQQGIDIVIVR 149
           +RNGVAIKGNIET S +S   +     I   + + +  + C        RQ+ IDIVI+R
Sbjct: 79  KRNGVAIKGNIETKS-ESASVVSRNVAIRNELDLYVNILHCKSYPGVPARQKDIDIVIIR 137

Query: 150 QNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKI 209
           QNTEGEYAMLEHESVDGVVESMK++T +NS R++++AFEYAKK GRK+VTT+HKANIMK+
Sbjct: 138 QNTEGEYAMLEHESVDGVVESMKVVTESNSDRVARFAFEYAKKNGRKRVTTIHKANIMKL 197

Query: 210 SDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGL 269
           SDGLFLE SR+VAK+YPEIEHNDMIIDN CMQLVS P QFDVM+M NLYG+I SNV+CGL
Sbjct: 198 SDGLFLETSRRVAKDYPEIEHNDMIIDNCCMQLVSKPHQFDVMIMTNLYGSIVSNVVCGL 257

Query: 270 IGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASI 329
           IGGAGL+SGKNYGDHYA+FEPGTRNTGTAIAGKNIANPIAML+ASVDML HLGH++HA +
Sbjct: 258 IGGAGLLSGKNYGDHYAIFEPGTRNTGTAIAGKNIANPIAMLSASVDMLNHLGHVQHAEL 317

Query: 330 IKLAIEKTINEDKIHTPDLGGTATSIDVVQNIIKLVQTNDLR 371
           I+ AIEKTI EDKIHTPDLGG+A S DVVQ II  +   D+R
Sbjct: 318 IQRAIEKTICEDKIHTPDLGGSARSTDVVQRIIDHILQADIR 359

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|270007569|gb|EFA04017.1| hypothetical protein TcasGA2_TC014166 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|332375801|gb|AEE63041.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|347967349|ref|XP_307994.5| AGAP002192-PA [Anopheles gambiae str. PEST] gi|333466337|gb|EAA03807.5| AGAP002192-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|347967347|ref|XP_003436054.1| AGAP002192-PB [Anopheles gambiae str. PEST] gi|333466338|gb|EGK96207.1| AGAP002192-PB [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|194743780|ref|XP_001954378.1| GF16768 [Drosophila ananassae] gi|190627415|gb|EDV42939.1| GF16768 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|157127515|ref|XP_001655018.1| isocitrate dehydrogenase [Aedes aegypti] gi|108872943|gb|EAT37168.1| AAEL010814-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|170047197|ref|XP_001851118.1| isocitrate dehydrogenase [Culex quinquefasciatus] gi|167869688|gb|EDS33071.1| isocitrate dehydrogenase [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|157127521|ref|XP_001655021.1| isocitrate dehydrogenase [Aedes aegypti] gi|108872946|gb|EAT37171.1| AAEL010814-PC [Aedes aegypti] Back     alignment and taxonomy information
>gi|193587197|ref|XP_001949717.1| PREDICTED: isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [Acyrthosiphon pisum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query376
FB|FBgn0039358402 CG5028 [Drosophila melanogaste 0.869 0.813 0.651 8.5e-120
ZFIN|ZDB-GENE-050417-435391 idh3g "isocitrate dehydrogenas 0.875 0.841 0.554 6.1e-94
WB|WBGene00009440396 idhg-1 [Caenorhabditis elegans 0.965 0.916 0.494 2.1e-91
UNIPROTKB|Q58CP0392 IDH3G "Isocitrate dehydrogenas 0.869 0.834 0.559 9.3e-91
UNIPROTKB|Q58D96388 IDH3G "Isocitrate dehydrogenas 0.869 0.842 0.559 9.3e-91
UNIPROTKB|P41564355 IDH3G "Isocitrate dehydrogenas 0.869 0.921 0.559 9.3e-91
UNIPROTKB|P51553393 IDH3G "Isocitrate dehydrogenas 0.869 0.832 0.556 1.2e-90
MGI|MGI:1099463393 Idh3g "isocitrate dehydrogenas 0.869 0.832 0.559 1.5e-90
RGD|2863393 Idh3g "isocitrate dehydrogenas 0.869 0.832 0.559 1.5e-90
UNIPROTKB|Q5XIJ3393 Idh3g "Isocitrate dehydrogenas 0.869 0.832 0.559 1.5e-90
FB|FBgn0039358 CG5028 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1179 (420.1 bits), Expect = 8.5e-120, P = 8.5e-120
 Identities = 219/336 (65%), Positives = 276/336 (82%)

Query:    38 AKYGGRNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSI 97
             A+YGGR+AVTMLPGGGIGPELM YV+E+FRY G P+DFE + IDP ++ NDDL+YAITSI
Sbjct:    52 AQYGGRHAVTMLPGGGIGPELMGYVREIFRYCGAPIDFEVIDIDPSTEGNDDLDYAITSI 111

Query:    98 RRNGVAIKGNIETGSLDSLWTLKLCRLILRVIAMMILSVRC--------RQQGIDIVIVR 149
             +RNGVA+KGNIET S  SL  +     I   + + +  V C        R   ID+V++R
Sbjct:   112 KRNGVALKGNIETKS-QSLTEVSRNVAIRNELDLYVNVVHCKSYPGIPARHHDIDVVLIR 170

Query:   150 QNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKI 209
             QNT+GEYAMLEHESV G+VESMK++T  N+ R+++YAFE+A++  RKKVTT+HKANIMK+
Sbjct:   171 QNTDGEYAMLEHESVPGIVESMKVVTVENAERVARYAFEFARQNNRKKVTTIHKANIMKL 230

Query:   210 SDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGL 269
             SDGLFLE++ +V K+YPE+EHN+MIIDNTCMQ VSNP QFDVM M NLYG I SNV+CGL
Sbjct:   231 SDGLFLEVANRVHKDYPELEHNNMIIDNTCMQSVSNPHQFDVMNMTNLYGTIVSNVLCGL 290

Query:   270 IGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASI 329
             +GGAGLISG+NYGDHYA+FEPGTRNTGTAIAGKNIANP+AM++AS+DML HLGH +HA++
Sbjct:   291 MGGAGLISGRNYGDHYAIFEPGTRNTGTAIAGKNIANPVAMISASIDMLNHLGHKEHANV 350

Query:   330 IKLAIEKTINEDKIHTPDLGGTATSIDVVQNIIKLV 365
             I+ A+ +TI  D I TPD+GGT +S DVV+NI+K++
Sbjct:   351 IQEAVYQTIVNDAIRTPDIGGTNSSTDVVENILKIL 386
GO:0004449 "isocitrate dehydrogenase (NAD+) activity" evidence=ISS
GO:0005759 "mitochondrial matrix" evidence=ISS
GO:0005739 "mitochondrion" evidence=ISS
GO:0006099 "tricarboxylic acid cycle" evidence=ISS
GO:0051287 "NAD binding" evidence=IEA
GO:0000287 "magnesium ion binding" evidence=IEA
GO:0005875 "microtubule associated complex" evidence=IDA
ZFIN|ZDB-GENE-050417-435 idh3g "isocitrate dehydrogenase 3 (NAD+) gamma" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
WB|WBGene00009440 idhg-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q58CP0 IDH3G "Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q58D96 IDH3G "Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P41564 IDH3G "Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
UNIPROTKB|P51553 IDH3G "Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1099463 Idh3g "isocitrate dehydrogenase 3 (NAD+), gamma" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|2863 Idh3g "isocitrate dehydrogenase 3 (NAD), gamma" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5XIJ3 Idh3g "Isocitrate dehydrogenase 3 (NAD), gamma" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q58CP0IDH3G_BOVIN1, ., 1, ., 1, ., 4, 10.54200.85100.8163yesN/A
O29627LEU3_ARCFU1, ., 1, ., 1, ., 8, 50.37870.83510.9631yesN/A
P70404IDHG1_MOUSE1, ., 1, ., 1, ., 4, 10.51480.90150.8625yesN/A
Q92IR7IDH_RICCN1, ., 1, ., 1, ., 4, 20.37380.81380.6335yesN/A
Q1RJU4IDH_RICBR1, ., 1, ., 1, ., 4, 20.37890.80050.6231yesN/A
Q68XA5IDH_RICTY1, ., 1, ., 1, ., 4, 20.37460.79780.6211yesN/A
O13696IDH1_SCHPO1, ., 1, ., 1, ., 4, 10.43510.88290.9325yesN/A
P41564IDH3G_MACFA1, ., 1, ., 1, ., 4, 10.54200.85100.9014N/AN/A
P41565IDHG1_RAT1, ., 1, ., 1, ., 4, 10.54200.85100.8142yesN/A
P28834IDH1_YEAST1, ., 1, ., 1, ., 4, 10.43320.87230.9111yesN/A
Q4UKR1IDH_RICFE1, ., 1, ., 1, ., 4, 20.38210.80050.6231yesN/A
P33197IDH_THET81, ., 1, ., 1, ., 4, 20.33050.87230.6612yesN/A
Q8LFC0IDH1_ARATH1, ., 1, ., 1, ., 4, 10.45920.85100.8719yesN/A
P50455LEU3_SULTO1, ., 1, ., 1, ., 8, 50.34030.82970.9258yesN/A
P51553IDH3G_HUMAN1, ., 1, ., 1, ., 4, 10.53910.85100.8142yesN/A
Q54B68IDHB_DICDI1, ., 1, ., 1, ., 4, 10.43880.85900.8972yesN/A
Q9UXB2LEU3_SULSO1, ., 1, ., 1, ., 8, 50.30260.82710.9255yesN/A
O94229IDH1_KLULA1, ., 1, ., 1, ., 4, 10.43530.89620.9335yesN/A
Q9ZDR0IDH_RICPR1, ., 1, ., 1, ., 4, 20.38090.79780.6211yesN/A
Q58130LEU3_METJA1, ., 1, ., 1, ., 8, 30.34420.82970.9369yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.1.10.921

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query376
TIGR00175333 TIGR00175, mito_nad_idh, isocitrate dehydrogenase, 1e-161
PLN00123360 PLN00123, PLN00123, isocitrate dehydrogenase (NAD+ 1e-103
PLN00118372 PLN00118, PLN00118, isocitrate dehydrogenase (NAD+ 1e-101
COG0473348 COG0473, LeuB, Isocitrate/isopropylmalate dehydrog 2e-95
PRK08997334 PRK08997, PRK08997, isocitrate dehydrogenase; Prov 2e-88
PRK09222 482 PRK09222, PRK09222, isocitrate dehydrogenase; Vali 1e-87
PRK14025330 PRK14025, PRK14025, multifunctional 3-isopropylmal 2e-75
pfam00180349 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehy 2e-69
TIGR02924 473 TIGR02924, ICDH_alpha, isocitrate dehydrogenase 5e-68
TIGR02088322 TIGR02088, LEU3_arch, isopropylmalate/isohomocitra 1e-67
PRK00772358 PRK00772, PRK00772, 3-isopropylmalate dehydrogenas 3e-45
COG0538407 COG0538, Icd, Isocitrate dehydrogenases [Energy pr 1e-40
TIGR02089352 TIGR02089, TTC, tartrate dehydrogenase 3e-40
PRK08194352 PRK08194, PRK08194, tartrate dehydrogenase; Provis 6e-39
PRK03437344 PRK03437, PRK03437, 3-isopropylmalate dehydrogenas 5e-38
TIGR00169346 TIGR00169, leuB, 3-isopropylmalate dehydrogenase 2e-34
TIGR00183416 TIGR00183, prok_nadp_idh, isocitrate dehydrogenase 2e-31
PRK06451412 PRK06451, PRK06451, isocitrate dehydrogenase; Vali 8e-28
PLN02329409 PLN02329, PLN02329, 3-isopropylmalate dehydrogenas 6e-27
PRK07006409 PRK07006, PRK07006, isocitrate dehydrogenase; Revi 3e-25
PRK07362474 PRK07362, PRK07362, isocitrate dehydrogenase; Vali 4e-11
PRK07362474 PRK07362, PRK07362, isocitrate dehydrogenase; Vali 3e-08
>gnl|CDD|232856 TIGR00175, mito_nad_idh, isocitrate dehydrogenase, NAD-dependent, mitochondrial type Back     alignment and domain information 
 Score =  454 bits (1169), Expect = e-161
 Identities = 182/337 (54%), Positives = 234/337 (69%), Gaps = 20/337 (5%)

Query: 41  GGRNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSN-DDLEYAITSIRR 99
           GG+  VT++PG GIGPE+   VK++FR A VP++FE + + P++D   +  + A+ SI+R
Sbjct: 1   GGKYTVTLIPGDGIGPEISGSVKKIFRAANVPIEFEEIDVSPQTDGKTEIPDEAVESIKR 60

Query: 100 NGVAIKGNIET----GSLDSLWTLKLCRLILR---------VIAMMILSVRCRQQGIDIV 146
           N VA+KG +ET    G   SL       + LR         V    +   + R + +DIV
Sbjct: 61  NKVALKGPLETPIGKGGHRSL------NVALRKELDLYANVVHCKSLPGFKTRHEDVDIV 114

Query: 147 IVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANI 206
           I+R+NTEGEY+ LEHESV GVVES+K+IT   S R+++YAFEYA+K GRKKVT VHKANI
Sbjct: 115 IIRENTEGEYSGLEHESVPGVVESLKVITRDKSERIARYAFEYARKNGRKKVTAVHKANI 174

Query: 207 MKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVI 266
           MK++DGLFL + R+VAKEYP+I    MI+DNTCMQLVS P QFDVMVMPNLYG I SN+ 
Sbjct: 175 MKLADGLFLNVCREVAKEYPDITFESMIVDNTCMQLVSRPSQFDVMVMPNLYGNILSNLG 234

Query: 267 CGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKH 326
            GL+GG GL+ G N G  YAVFEPG R+TG  IAG+NIANP A++ +SV ML HLG  +H
Sbjct: 235 AGLVGGPGLVPGANIGRDYAVFEPGVRHTGPDIAGQNIANPTALILSSVMMLNHLGLKEH 294

Query: 327 ASIIKLAIEKTINEDKIHTPDLGGTATSIDVVQNIIK 363
           A  I+ A+  TI E K  T DLGGTAT+ D  + +IK
Sbjct: 295 ADRIQKAVLSTIAEGKNRTKDLGGTATTSDFTEAVIK 331

Several NAD- or NADP-dependent dehydrogenases, including 3-isopropylmalate dehydrogenase, tartrate dehydrogenase, and the multimeric forms of isocitrate dehydrogenase, share a nucleotide binding domain unrelated to that of lactate dehydrogenase and its homologs. These enzymes dehydrogenate their substates at a H-C-OH site adjacent to a H-C-COOH site; the latter carbon, now adjacent to a carbonyl group, readily decarboxylates. Mitochondrial NAD-dependent isocitrate dehydrogenases (IDH) resemble prokaryotic NADP-dependent IDH and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent IDH. The mitochondrial NAD-dependent isocitrate dehydrogenase is believed to be an alpha(2)-beta-gamma heterotetramer. All subunits are homologous and found by this model. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1 [Energy metabolism, TCA cycle]. Length = 333
>gnl|CDD|215065 PLN00123, PLN00123, isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>gnl|CDD|215062 PLN00118, PLN00118, isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>gnl|CDD|223549 COG0473, LeuB, Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|181606 PRK08997, PRK08997, isocitrate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|236416 PRK09222, PRK09222, isocitrate dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|184462 PRK14025, PRK14025, multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|215773 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrogenase Back     alignment and domain information
>gnl|CDD|234062 TIGR02924, ICDH_alpha, isocitrate dehydrogenase Back     alignment and domain information
>gnl|CDD|233717 TIGR02088, LEU3_arch, isopropylmalate/isohomocitrate dehydrogenases Back     alignment and domain information
>gnl|CDD|234832 PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|223612 COG0538, Icd, Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|233718 TIGR02089, TTC, tartrate dehydrogenase Back     alignment and domain information
>gnl|CDD|181281 PRK08194, PRK08194, tartrate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|179579 PRK03437, PRK03437, 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|232853 TIGR00169, leuB, 3-isopropylmalate dehydrogenase Back     alignment and domain information
>gnl|CDD|232862 TIGR00183, prok_nadp_idh, isocitrate dehydrogenase, NADP-dependent, prokaryotic type Back     alignment and domain information
>gnl|CDD|235803 PRK06451, PRK06451, isocitrate dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|215188 PLN02329, PLN02329, 3-isopropylmalate dehydrogenase Back     alignment and domain information
>gnl|CDD|180792 PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed Back     alignment and domain information
>gnl|CDD|180944 PRK07362, PRK07362, isocitrate dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|180944 PRK07362, PRK07362, isocitrate dehydrogenase; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 376
COG0473348 LeuB Isocitrate/isopropylmalate dehydrogenase [Ami 100.0
PRK08997334 isocitrate dehydrogenase; Provisional 100.0
PLN00123360 isocitrate dehydrogenase (NAD+) 100.0
PLN00118372 isocitrate dehydrogenase (NAD+) 100.0
PRK14025330 multifunctional 3-isopropylmalate dehydrogenase/D- 100.0
PRK08194352 tartrate dehydrogenase; Provisional 100.0
TIGR00175333 mito_nad_idh isocitrate dehydrogenase, NAD-depende 100.0
KOG0785|consensus365 100.0
TIGR02089352 TTC tartrate dehydrogenase. Tartrate dehydrogenase 100.0
PRK09222 482 isocitrate dehydrogenase; Validated 100.0
TIGR02924 473 ICDH_alpha isocitrate dehydrogenase. This family o 100.0
PRK03437344 3-isopropylmalate dehydrogenase; Provisional 100.0
PLN02329409 3-isopropylmalate dehydrogenase 100.0
TIGR00169349 leuB 3-isopropylmalate dehydrogenase. This model w 100.0
PRK00772358 3-isopropylmalate dehydrogenase; Provisional 100.0
PRK06451412 isocitrate dehydrogenase; Validated 100.0
TIGR02088322 LEU3_arch isopropylmalate/isohomocitrate dehydroge 100.0
PRK07006409 isocitrate dehydrogenase; Reviewed 100.0
KOG0784|consensus375 100.0
TIGR00183416 prok_nadp_idh isocitrate dehydrogenase, NADP-depen 100.0
PRK07362474 isocitrate dehydrogenase; Validated 100.0
PF00180348 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; 100.0
PRK08299402 isocitrate dehydrogenase; Validated 100.0
PLN00103410 isocitrate dehydrogenase (NADP+); Provisional 100.0
TIGR00127409 nadp_idh_euk isocitrate dehydrogenase, NADP-depend 100.0
PTZ00435413 isocitrate dehydrogenase; Provisional 100.0
KOG0786|consensus363 100.0
PLN03065483 isocitrate dehydrogenase (NADP+); Provisional 100.0
COG0538407 Icd Isocitrate dehydrogenases [Energy production a 100.0
PLN00096393 isocitrate dehydrogenase (NADP+); Provisional 100.0
KOG1526|consensus422 99.98
PF03971735 IDH: Monomeric isocitrate dehydrogenase; InterPro: 97.13
TIGR00178741 monomer_idh isocitrate dehydrogenase, NADP-depende 96.84
COG2838744 Icd Monomeric isocitrate dehydrogenase [Energy pro 96.39
PRK03371326 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 94.41
PRK03743332 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 94.17
PRK02746345 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 94.11
PRK01909329 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 94.02
PF04166298 PdxA: Pyridoxal phosphate biosynthetic protein Pdx 93.25
PRK00232332 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 91.55
COG1995332 PdxA Pyridoxal phosphate biosynthesis protein [Coe 91.42
PRK05312336 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 90.81
TIGR00557320 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. 90.79
PRK03946307 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 90.62
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.7e-114  Score=842.96  Aligned_cols=324  Identities=40%  Similarity=0.622  Sum_probs=307.3

Q ss_pred             CeeeEEEEcCCCCCHHHHHHHHHHHHHcC---CCeeEEEEEccccCCCCCC---hHHHHHHHHhcCeEEEcccccCCCC-
Q psy559           42 GRNAVTMLPGGGIGPELMSYVKEVFRYAG---VPVDFETVQIDPKSDSNDD---LEYAITSIRRNGVAIKGNIETGSLD-  114 (376)
Q Consensus        42 ~~~~I~vipGDGIGpEV~~aa~~Vl~a~~---~~ie~~~~~~g~~~~~~~~---~~~~~~~~~~~dail~G~i~~p~~~-  114 (376)
                      +.++|++|||||||||||+++++||++++   ++|+|+++++|..++++++   |+++++.|+++|++||||+++|.+. 
T Consensus         2 ~~~~IavipGDGIGpEv~~~a~kVl~a~~~~~~~~e~~~~~~G~~~~~~~G~~lpeetl~~~~~~DaiL~Gavg~P~~~~   81 (348)
T COG0473           2 KTYTIAVIPGDGIGPEVMAAALKVLEAAAEFGLDFEFEEAEVGGEAYDKHGEPLPEETLESLKKADAILFGAVGGPKWDP   81 (348)
T ss_pred             CceEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCceEEEEehhhHHHHHHcCCCCCHHHHHHHHhCCEEEEcccCCCCCCC
Confidence            57999999999999999999999999986   8999999999998887654   9999999999999999999999442 


Q ss_pred             -----chhhHHHhhhhcccEee-----cccccccCC-CCccEEEEccCCcceeeccccc-ccCc-eEEEeEeecHHHHHH
Q psy559          115 -----SLWTLKLCRLILRVIAM-----MILSVRCRQ-QGIDIVIVRQNTEGEYAMLEHE-SVDG-VVESMKIITAANSYR  181 (376)
Q Consensus       115 -----~~~~~~LR~~~ldLyan-----~~pg~~~~~-~~iDivivREnteG~Y~g~e~~-~~~~-va~~~~~~Tr~~~eR  181 (376)
                           ++.+++|| |+||||||     .+|+++++. +++|||||||||||+|+|.++. ..++ +++++++|||.++||
T Consensus        82 ~~~~~~~~ll~lR-k~l~lyANlRP~k~~~~~k~~~~~~~D~viVREnTeG~Y~G~~~~~~~~~eva~~~~~~Tr~~~eR  160 (348)
T COG0473          82 LPRPERGLLLALR-KELDLYANLRPAKSLPGLKSPLVKGVDIVIVRENTEGLYFGEEGRILGGGEVAIDTKVITRKGSER  160 (348)
T ss_pred             CCCcccchHHHHH-HhcCceeeeeecccCCCCCCccCCCccEEEEeeCCCccccCCCccccCCCeEEEEEEeccHHHHHH
Confidence                 34599999 99999999     789999877 6999999999999999999884 3344 899999999999999


Q ss_pred             HHHHHHHHHHhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHHHHHHHHhCCCCccEEecCCcchhh
Q psy559          182 LSKYAFEYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAI  261 (376)
Q Consensus       182 iar~AFe~A~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDI  261 (376)
                      |+|+|||+|++|++||||+|||+|||++||+||+++|+||+++||||+++|+|||+++||||++|++||||||+||||||
T Consensus       161 I~r~AFe~A~~R~~kkvTsv~KaNVl~~s~~lwrev~~eva~~yPdv~~~~~~VD~aam~lV~~P~~FDViVt~NlFGDI  240 (348)
T COG0473         161 IARFAFELARKRGRKKVTSVHKANVLKLSDGLWREVVEEVAKEYPDVELDHMYVDAAAMQLVRNPEQFDVIVTSNLFGDI  240 (348)
T ss_pred             HHHHHHHHHHhhCCCceEEEehhhhhhhhhHHHHHHHHHHhhcCCCcchhHHhHHHHHHHHhhCccccCEEEEccchhHH
Confidence            99999999999988999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhhcCCcccccccccCCC--ceeeccCCCCccccccCCCccchhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Q psy559          262 TSNVICGLIGGAGLISGKNYGDH--YAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTIN  339 (376)
Q Consensus       262 LSDlaa~l~GglGl~psanig~~--~a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~lg~~~~A~~I~~AV~~~l~  339 (376)
                      |||+||+++|||||+||+|+|++  ++|||| +|||||||||||||||+|+|||++|||+|+|..++|++|++||+++|+
T Consensus       241 LSD~aa~l~GslGl~PSAnig~~~~~~lfEP-vHGSAPDIAGkgiANPiA~IlS~aMML~~~g~~~~A~~Ie~Av~~vl~  319 (348)
T COG0473         241 LSDEAAALTGSLGLAPSANLGDERGPALFEP-VHGSAPDIAGKGIANPIATILSAAMMLRHLGEKEAADAIENAVEKVLA  319 (348)
T ss_pred             HHhHHHHhcCccccCccCccCCCCCCceeec-CCCCcccccCCCccChHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            99999999999999999999997  999999 999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCCCCCCCCCCHHHHHHHHHHHHhh
Q psy559          340 EDKIHTPDLGGTATSIDVVQNIIKLVQT  367 (376)
Q Consensus       340 ~~~~~T~DlgG~~sT~e~~daV~~~l~~  367 (376)
                      +++++|+||||+++|.||+|+|+++|+.
T Consensus       320 ~~g~~T~Dlgg~~~T~e~~d~I~~~l~~  347 (348)
T COG0473         320 EGGIRTPDLGGNATTSEVGDAIAKALAS  347 (348)
T ss_pred             cCCCCCcccCCCccHHHHHHHHHHHHhc
Confidence            7669999999999999999999999864

>PRK08997 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>PLN00123 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>PLN00118 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional Back     alignment and domain information
>PRK08194 tartrate dehydrogenase; Provisional Back     alignment and domain information
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type Back     alignment and domain information
>KOG0785|consensus Back     alignment and domain information
>TIGR02089 TTC tartrate dehydrogenase Back     alignment and domain information
>PRK09222 isocitrate dehydrogenase; Validated Back     alignment and domain information
>TIGR02924 ICDH_alpha isocitrate dehydrogenase Back     alignment and domain information
>PRK03437 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>PLN02329 3-isopropylmalate dehydrogenase Back     alignment and domain information
>TIGR00169 leuB 3-isopropylmalate dehydrogenase Back     alignment and domain information
>PRK00772 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>PRK06451 isocitrate dehydrogenase; Validated Back     alignment and domain information
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases Back     alignment and domain information
>PRK07006 isocitrate dehydrogenase; Reviewed Back     alignment and domain information
>KOG0784|consensus Back     alignment and domain information
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type Back     alignment and domain information
>PRK07362 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate Back     alignment and domain information
>PRK08299 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type Back     alignment and domain information
>PTZ00435 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>KOG0786|consensus Back     alignment and domain information
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>KOG1526|consensus Back     alignment and domain information
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1 Back     alignment and domain information
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type Back     alignment and domain information
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion] Back     alignment and domain information
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional Back     alignment and domain information
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated Back     alignment and domain information
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional Back     alignment and domain information
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated Back     alignment and domain information
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) Back     alignment and domain information
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed Back     alignment and domain information
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism] Back     alignment and domain information
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional Back     alignment and domain information
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase Back     alignment and domain information
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query376
3blw_A349 Yeast Isocitrate Dehydrogenase With Citrate And Amp 5e-79
3blv_A354 Yeast Isocitrate Dehydrogenase With Citrate Bound I 1e-76
3blw_B354 Yeast Isocitrate Dehydrogenase With Citrate And Amp 4e-54
3blv_B354 Yeast Isocitrate Dehydrogenase With Citrate Bound I 1e-50
2d1c_A 496 Crystal Structure Of Tt0538 Protein From Thermus Th 6e-47
1x0l_A333 Crystal Structure Of Tetrameric Homoisocitrate Dehy 8e-42
3asj_A334 Crystal Structure Of Homoisocitrate Dehydrogenase I 9e-42
1wpw_A336 Crystal Structure Of Ipmdh From Sulfolobus Tokodaii 5e-40
3ah3_A334 Crystal Structure Of Lr5-1, 3-Isopropylmalate Dehyd 2e-39
3ty3_A366 Crystal Structure Of Homoisocitrate Dehydrogenase F 5e-35
3u1h_A390 Crystal Structure Of Ipmdh From The Last Common Anc 2e-29
1gc8_A345 The Crystal Structure Of Thermus Thermophilus 3-Iso 7e-28
1vlc_A366 Crystal Structure Of 3-isopropylmalate Dehydrogenas 1e-27
3fmx_X364 Crystal Structure Of Tartrate Dehydrogenase From Ps 1e-27
1v5b_A366 The Structure Of The Mutant, S225a And E251l, Of 3- 2e-27
1wal_A345 3-Isopropylmalate Dehydrogenase (Ipmdh) Mutant (M21 3e-27
2ayq_A366 3-Isopropylmalate Dehydrogenase From The Moderate F 3e-27
1ipd_A345 Three-Dimensional Structure Of A Highly Thermostabl 3e-27
1osj_A345 Structure Of 3-isopropylmalate Dehydrogenase Length 3e-27
1g2u_A345 The Structure Of The Mutant, A172v, Of 3-Isopropylm 3e-27
1osi_A345 Structure Of 3-Isopropylmalate Dehydrogenase Length 3e-27
2y3z_A359 Structure Of Isopropylmalate Dehydrogenase From The 4e-27
1gc9_A345 The Crystal Structure Of Thermus Thermophilus 3-Iso 5e-27
1dpz_A349 Stucture Of Modified 3-Isopropylmalate Dehydrogenas 6e-27
1dr0_A346 Structure Of Modified 3-isopropylmalate Dehydrogena 6e-27
1dr8_A344 Structure Of Modified 3-Isopropylmalate Dehydrogena 6e-27
1v53_A366 The Crystal Structure Of 3-Isopropylmalate Dehydrog 6e-27
1cm7_A363 3-Isopropylmalate Dehydrogenase From Escherichia Co 9e-27
1cnz_A363 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmon 2e-26
1v94_A435 Crystal Structure Of Isocitrate Dehydrogenase From 2e-25
3r8w_A405 Structure Of 3-Isopropylmalate Dehydrogenase Isofor 3e-25
1idm_A343 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chime 3e-25
2dht_A409 Crystal Structure Of Isocitrate Dehydrogenase From 4e-25
3flk_A364 Crystal Structure Of Tartrate Dehydrogenase From Ps 8e-25
3vkz_A375 3-Isopropylmalate Dehydrogenase From Shewanella One 2e-24
3vml_A375 Chimera 3-Isopropylmalate Dehydrogenase Between She 3e-24
1w0d_A337 The High Resolution Structure Of Mycobacterium Tube 4e-24
3vmk_A375 3-Isopropylmalate Dehydrogenase From Shewanella Ben 6e-24
1xac_A345 Chimera Isopropylmalate Dehydrogenase Between Bacil 7e-24
2iv0_A412 Thermal Stability Of Isocitrate Dehydrogenase From 2e-23
1iso_A416 Isocitrate Dehydrogenase: Structure Of An Engineere 2e-22
2d4v_A429 Crystal Structure Of Nad Dependent Isocitrate Dehyd 2e-21
1a05_A358 Crystal Structure Of The Complex Of 3-Isopropylmala 5e-21
1cw7_A416 Low Temperature Structure Of Wild-Type Idh Complexe 1e-20
1grp_A416 Regulatory And Catalytic Mechanisms In Escherichia 4e-20
1bl5_A414 Isocitrate Dehydrogenase From E. Coli Single Turnov 4e-20
1p8f_A416 A Four Location Model To Explain The Stereospecific 5e-20
1hj6_A416 Isocitrate Dehydrogenase S113e Mutant Complexed Wit 9e-20
4ajb_A416 3d Structure Of E. Coli Isocitrate Dehydrogenase K1 9e-20
1gro_A416 Regulatory And Catalytic Mechanisms In Escherichia 9e-20
6icd_A416 Regulation Of An Enzyme By Phosphorylation At The A 9e-20
4icd_A416 Regulation Of Isocitrate Dehydrogenase By Phosphory 9e-20
1hqs_A423 Crystal Structure Of Isocitrate Dehydrogenase From 1e-19
3dms_A427 1.65a Crystal Structure Of Isocitrate Dehydrogenase 1e-19
1idd_A416 Isocitrate Dehydrogenase Y160f Mutant Apo Enzyme Le 1e-19
4iwh_A363 Crystal Structure Of A 3-isopropylmalate Dehydrogen 2e-19
1cw1_A416 Crystal Structure Of Isocitrate Dehydrogenase Mutan 3e-19
3udu_A361 Crystal Structure Of Putative 3-Isopropylmalate Deh 3e-19
3udo_A361 Crystal Structure Of Putative Isopropylamlate Dehyd 2e-16
>pdb|3BLW|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound In The Regulatory Subunits Length = 349 Back     alignment and structure 
Iteration: 1

 Score =  291 bits (744), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 146/337 (43%), Positives = 221/337 (65%), Gaps = 9/337 (2%)
Query: 39  KYGGRNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLEYAITSIR 98
           KYGGR  VT++PG G+G E+   V+ +F    +P+D+ET+ I  ++D  + +  A+ S++
Sbjct: 13  KYGGRFTVTLIPGDGVGKEITDSVRTIFEAENIPIDWETINIK-QTDHKEGVYEAVESLK 71
Query: 99  RNGVAIKGNIET-------GSLDSLWTLKLCRLILRVIAMMILSVRCRQQGIDIVIVRQN 151
           RN + +KG   T       GSL+     +L       +   +  V+ R   ID++++R+N
Sbjct: 72  RNKIGLKGLWHTPADQTGHGSLNVALRKQLDIYANVALFKSLKGVKTRIPDIDLIVIREN 131
Query: 152 TEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKVTTVHKANIMKISD 211
           TEGE++ LEHESV GVVES+K++T   + R++++AF++AKK+ RK VT VHKANIMK+ D
Sbjct: 132 TEGEFSGLEHESVPGVVESLKVMTRPKTERIARFAFDFAKKYNRKSVTAVHKANIMKLGD 191
Query: 212 GLFLEISRKVA-KEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLI 270
           GLF  I  ++  KEYP+I+ + +I+DN  MQ V+ P QFDV+V P++YG I  N+   LI
Sbjct: 192 GLFRNIITEIGQKEYPDIDVSSIIVDNASMQAVAKPHQFDVLVTPSMYGTILGNIGAALI 251
Query: 271 GGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASII 330
           GG GL++G N+G  YAVFEPG+R+ G  I G+N+ANP AM+ +S  ML HLG  ++A+ I
Sbjct: 252 GGPGLVAGANFGRDYAVFEPGSRHVGLDIKGQNVANPTAMILSSTLMLNHLGLNEYATRI 311
Query: 331 KLAIEKTINEDKIHTPDLGGTATSIDVVQNIIKLVQT 367
             A+ +TI E K  T D+GG++++ D    II  + T
Sbjct: 312 SKAVHETIAEGKHTTRDIGGSSSTTDFTNEIINKLST 348
>pdb|3BLV|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate Bound In The Regulatory Subunits Length = 354 Back     alignment and structure
>pdb|3BLW|B Chain B, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound In The Regulatory Subunits Length = 354 Back     alignment and structure
>pdb|3BLV|B Chain B, Yeast Isocitrate Dehydrogenase With Citrate Bound In The Regulatory Subunits Length = 354 Back     alignment and structure
>pdb|2D1C|A Chain A, Crystal Structure Of Tt0538 Protein From Thermus Thermophilus Hb8 Length = 496 Back     alignment and structure
>pdb|1X0L|A Chain A, Crystal Structure Of Tetrameric Homoisocitrate Dehydrogenase From An Extreme Thermophile, Thermus Thermophilus Length = 333 Back     alignment and structure
>pdb|3ASJ|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase In Complex With A Designed Inhibitor Length = 334 Back     alignment and structure
>pdb|1WPW|A Chain A, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii Length = 336 Back     alignment and structure
>pdb|3AH3|A Chain A, Crystal Structure Of Lr5-1, 3-Isopropylmalate Dehydrogenase Created By Directed Evolution Length = 334 Back     alignment and structure
>pdb|3TY3|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine Length = 366 Back     alignment and structure
>pdb|3U1H|A Chain A, Crystal Structure Of Ipmdh From The Last Common Ancestor Of Bacillus Length = 390 Back     alignment and structure
>pdb|1GC8|A Chain A, The Crystal Structure Of Thermus Thermophilus 3-Isopropylmalate Dehydrogenase Mutated At 172th From Ala To Phe Length = 345 Back     alignment and structure
>pdb|1VLC|A Chain A, Crystal Structure Of 3-isopropylmalate Dehydrogenase (tm0556) From Thermotoga Maritima At 1.90 A Resolution Length = 366 Back     alignment and structure
>pdb|1V5B|A Chain A, The Structure Of The Mutant, S225a And E251l, Of 3- Isopropylmalate Dehydrogenase From Bacillus Coagulans Length = 366 Back     alignment and structure
>pdb|1WAL|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) Mutant (M219a)from Thermus Thermophilus Length = 345 Back     alignment and structure
>pdb|2AYQ|A Chain A, 3-Isopropylmalate Dehydrogenase From The Moderate Facultative Thermophile, Bacillus Coagulans Length = 366 Back     alignment and structure
>pdb|1IPD|A Chain A, Three-Dimensional Structure Of A Highly Thermostable Enzyme, 3- Isopropylmalate Dehydrogenase Of Thermus Thermophilus At 2.2 Angstroms Resolution Length = 345 Back     alignment and structure
>pdb|1OSJ|A Chain A, Structure Of 3-isopropylmalate Dehydrogenase Length = 345 Back     alignment and structure
>pdb|1G2U|A Chain A, The Structure Of The Mutant, A172v, Of 3-Isopropylmalate Dehydrogenase From Thermus Thermophilus Hb8 : Its Thermostability And Structure Length = 345 Back     alignment and structure
>pdb|1OSI|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase Length = 345 Back     alignment and structure
>pdb|2Y3Z|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus Thermophilus - Apo Enzyme Length = 359 Back     alignment and structure
>pdb|1GC9|A Chain A, The Crystal Structure Of Thermus Thermophilus 3-Isopropylmalate Dehydrogenase Mutated At 172th From Ala To Gly Length = 345 Back     alignment and structure
>pdb|1DPZ|A Chain A, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At The C- Terminus, Hd711 Length = 349 Back     alignment and structure
>pdb|1DR0|A Chain A, Structure Of Modified 3-isopropylmalate Dehydrogenase At The C- Terminus, Hd708 Length = 346 Back     alignment and structure
>pdb|1DR8|A Chain A, Structure Of Modified 3-Isopropylmalate Dehydrogenase At The C- Terminus, Hd177 Length = 344 Back     alignment and structure
>pdb|1V53|A Chain A, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase From Bacillus Coagulans Length = 366 Back     alignment and structure
>pdb|1CM7|A Chain A, 3-Isopropylmalate Dehydrogenase From Escherichia Coli Length = 363 Back     alignment and structure
>pdb|1CNZ|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella Typhimurium Length = 363 Back     alignment and structure
>pdb|1V94|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From Aeropyrum Pernix Length = 435 Back     alignment and structure
>pdb|3R8W|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2 From Arabidopsis Thaliana At 2.2 Angstrom Resolution Length = 405 Back     alignment and structure
>pdb|1IDM|A Chain A, 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chimera Length = 343 Back     alignment and structure
>pdb|2DHT|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From Sulfolobus Tokodaii Strain7 Length = 409 Back     alignment and structure
>pdb|3FLK|A Chain A, Crystal Structure Of Tartrate Dehydrogenase From Pseudomonas Complex With Nadh, Oxalate And Metal Ion Length = 364 Back     alignment and structure
>pdb|3VKZ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 At Atmospheric Pressure Length = 375 Back     alignment and structure
>pdb|3VML|A Chain A, Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella Oneidensis Mr-1 (O) And Shewanella Benthica Db21 Mt-2 (M) From N-Terminal: 20% O Middle 70% M Residual 10% O Length = 375 Back     alignment and structure
>pdb|1W0D|A Chain A, The High Resolution Structure Of Mycobacterium Tuberculosis Leub (Rv2995c) Length = 337 Back     alignment and structure
>pdb|3VMK|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica Db21 Mt-2 Length = 375 Back     alignment and structure
>pdb|1XAC|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus Subtilis (M) And Thermus Thermophilus (T) From N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated At S82r. Low Temperature (100k) Structure. Length = 345 Back     alignment and structure
>pdb|2IV0|A Chain A, Thermal Stability Of Isocitrate Dehydrogenase From Archaeoglobus Fulgidus Studied By Crystal Structure Analysis And Engineering Of Chimers Length = 412 Back     alignment and structure
>pdb|1ISO|A Chain A, Isocitrate Dehydrogenase: Structure Of An Engineered Nadp+--> Nad+ Specificity-Reversal Mutant Length = 416 Back     alignment and structure
>pdb|2D4V|A Chain A, Crystal Structure Of Nad Dependent Isocitrate Dehydrogenase From Acidithiobacillus Thiooxidans Length = 429 Back     alignment and structure
>pdb|1A05|A Chain A, Crystal Structure Of The Complex Of 3-Isopropylmalate Dehydrogenase From Thiobacillus Ferrooxidans With 3- Isopropylmalate Length = 358 Back     alignment and structure
>pdb|1CW7|A Chain A, Low Temperature Structure Of Wild-Type Idh Complexed With Mg- Isocitrate Length = 416 Back     alignment and structure
>pdb|1GRP|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli Isocitrate Dehydrogenase: Multiple Roles For N115 Length = 416 Back     alignment and structure
>pdb|1BL5|A Chain A, Isocitrate Dehydrogenase From E. Coli Single Turnover Laue Structure Of Rate-limited Product Complex, 10 Msec Time Resolution Length = 414 Back     alignment and structure
>pdb|1P8F|A Chain A, A Four Location Model To Explain The Stereospecificity Of Proteins. Length = 416 Back     alignment and structure
>pdb|1HJ6|A Chain A, Isocitrate Dehydrogenase S113e Mutant Complexed With Isopropylmalate, Nadp+ And Magnesium (Flash-Cooled) Length = 416 Back     alignment and structure
>pdb|4AJB|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m Mutant In Complex With Isocitrate, Magnesium(Ii) And Thionadp Length = 416 Back     alignment and structure
>pdb|1GRO|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli Isocitrate Dehydrogenase: Multiple Roles For N115 Length = 416 Back     alignment and structure
>pdb|6ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active Site Length = 416 Back     alignment and structure
>pdb|4ICD|A Chain A, Regulation Of Isocitrate Dehydrogenase By Phosphorylation Involves No Long-Range Conformational Change In The Free Enzyme Length = 416 Back     alignment and structure
>pdb|1HQS|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From Bacillus Subtilis Length = 423 Back     alignment and structure
>pdb|3DMS|A Chain A, 1.65a Crystal Structure Of Isocitrate Dehydrogenase From Burkholderia Pseudomallei Length = 427 Back     alignment and structure
>pdb|1IDD|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Apo Enzyme Length = 416 Back     alignment and structure
>pdb|4IWH|A Chain A, Crystal Structure Of A 3-isopropylmalate Dehydrogenase From Burkholderia Pseudomallei Length = 363 Back     alignment and structure
>pdb|1CW1|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase Mutant K230m Bound To Isocitrate And Mn2+ Length = 416 Back     alignment and structure
>pdb|3UDU|A Chain A, Crystal Structure Of Putative 3-Isopropylmalate Dehydrogenase From Campylobacter Jejuni Length = 361 Back     alignment and structure
>pdb|3UDO|A Chain A, Crystal Structure Of Putative Isopropylamlate Dehydrogenase From Campylobacter Jejuni Length = 361 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query376
3blx_A349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 1e-152
3blx_B354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 1e-147
2d1c_A 496 Isocitrate dehydrogenase; structural genomics, NPP 1e-146
1wpw_A336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 1e-129
1x0l_A333 Homoisocitrate dehydrogenase; oxidoreductase, deca 1e-122
3ty4_A366 Probable homoisocitrate dehydrogenase; B-hydroxyac 1e-108
2iv0_A412 Isocitrate dehydrogenase; oxidoreductase, tricarbo 1e-100
1tyo_A435 Isocitrate dehydrogenase; enzyme-ethenonadp comple 1e-100
2e0c_A409 409AA long hypothetical NADP-dependent isocitrate 6e-99
3dms_A427 Isocitrate dehydrogenase [NADP]; struc genomics, s 4e-97
1hqs_A423 Isocitrate dehydrogenase; glyoxylate bypass, bsidh 3e-87
2d4v_A429 Isocitrate dehydrogenase; alpha and beta protein, 9e-84
3flk_A364 Tartrate dehydrogenase/decarboxylase; cytoplasm, l 1e-69
1w0d_A337 3-isopropylmalate dehydrogenase; oxidoreductase, l 4e-55
2y3z_A359 3-isopropylmalate dehydrogenase; oxidoreductase, L 1e-43
3udu_A361 3-isopropylmalate dehydrogenase; structural genomi 2e-41
1a05_A358 IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxid 3e-41
1vlc_A366 3-isopropylmalate dehydrogenase; TM0556, structura 2e-40
3vmk_A375 3-isopropylmalate dehydrogenase; oxidoreductase, d 2e-39
1cnz_A363 IPMDH, IMDH, protein (3-isopropylmalate dehydrogen 2e-39
3r8w_A405 3-isopropylmalate dehydrogenase 2, chloroplastic; 4e-39
3u1h_A390 3-isopropylmalate dehydrogenase; oxidored; 2.80A { 5e-39
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
1zor_A399 Isocitrate dehydrogenase; wild type enzyme, CIS-pr 2e-04
2uxq_A402 Isocitrate dehydrogenase native; psychrophilic, co 4e-04
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Length = 349 Back     alignment and structure
 Score =  431 bits (1111), Expect = e-152
 Identities = 146/350 (41%), Positives = 218/350 (62%), Gaps = 21/350 (6%)

Query: 32  KEVYTKAKYGGRNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSNDDLE 91
            E     KYGGR  VT++PG G+G E+   V+ +F    +P+D+ET+ I       + + 
Sbjct: 6   AERTLPKKYGGRFTVTLIPGDGVGKEITDSVRTIFEAENIPIDWETINIKQTDHK-EGVY 64

Query: 92  YAITSIRRNGVAIKGNIET----GSLDSLWTLKLCRLILR---------VIAMMILSVRC 138
            A+ S++RN + +KG   T        SL       + LR          +   +  V+ 
Sbjct: 65  EAVESLKRNKIGLKGLWHTPADQTGHGSL------NVALRKQLDIYANVALFKSLKGVKT 118

Query: 139 RQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAKKFGRKKV 198
           R   ID++++R+NTEGE++ LEHESV GVVES+K++T   + R++++AF++AKK+ RK V
Sbjct: 119 RIPDIDLIVIRENTEGEFSGLEHESVPGVVESLKVMTRPKTERIARFAFDFAKKYNRKSV 178

Query: 199 TTVHKANIMKISDGLFLEISRKVA-KEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNL 257
           T VHKANIMK+ DGLF  I  ++  KEYP+I+ + +I+DN  MQ V+ P QFDV+V P++
Sbjct: 179 TAVHKANIMKLGDGLFRNIITEIGQKEYPDIDVSSIIVDNASMQAVAKPHQFDVLVTPSM 238

Query: 258 YGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDM 317
           YG I  N+   LIGG GL++G N+G  YAVFEPG+R+ G  I G+N+ANP AM+ +S  M
Sbjct: 239 YGTILGNIGAALIGGPGLVAGANFGRDYAVFEPGSRHVGLDIKGQNVANPTAMILSSTLM 298

Query: 318 LEHLGHMKHASIIKLAIEKTINEDKIHTPDLGGTATSIDVVQNIIKLVQT 367
           L HLG  ++A+ I  A+ +TI E K  T D+GG++++ D    II  + T
Sbjct: 299 LNHLGLNEYATRISKAVHETIAEGKHTTRDIGGSSSTTDFTNEIINKLST 348
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Length = 354 Back     alignment and structure
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus} Length = 496 Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Length = 336 Back     alignment and structure
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Length = 333 Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} PDB: 3ty3_A Length = 366 Back     alignment and structure
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Length = 412 Back     alignment and structure
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Length = 435 Back     alignment and structure
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Length = 409 Back     alignment and structure
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A 8icd_A* 6icd_A ... Length = 427 Back     alignment and structure
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Length = 423 Back     alignment and structure
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Length = 429 Back     alignment and structure
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X* Length = 364 Back     alignment and structure
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A Length = 337 Back     alignment and structure
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A Length = 359 Back     alignment and structure
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} PDB: 3udo_A Length = 361 Back     alignment and structure
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1 Length = 358 Back     alignment and structure
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1 Length = 366 Back     alignment and structure
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A* Length = 375 Back     alignment and structure
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A Length = 363 Back     alignment and structure
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana} Length = 405 Back     alignment and structure
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A Length = 390 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima} Length = 399 Back     alignment and structure
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Length = 402 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query376
1x0l_A333 Homoisocitrate dehydrogenase; oxidoreductase, deca 100.0
3blx_A349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 100.0
3blx_B354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 100.0
3ty4_A366 Probable homoisocitrate dehydrogenase; B-hydroxyac 100.0
3flk_A364 Tartrate dehydrogenase/decarboxylase; cytoplasm, l 100.0
3udu_A361 3-isopropylmalate dehydrogenase; structural genomi 100.0
2y3z_A359 3-isopropylmalate dehydrogenase; oxidoreductase, L 100.0
3u1h_A390 3-isopropylmalate dehydrogenase; oxidored; 2.80A { 100.0
1vlc_A366 3-isopropylmalate dehydrogenase; TM0556, structura 100.0
1wpw_A336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 100.0
3vmk_A375 3-isopropylmalate dehydrogenase; oxidoreductase, d 100.0
2d1c_A 496 Isocitrate dehydrogenase; structural genomics, NPP 100.0
1cnz_A363 IPMDH, IMDH, protein (3-isopropylmalate dehydrogen 100.0
3r8w_A405 3-isopropylmalate dehydrogenase 2, chloroplastic; 100.0
1w0d_A337 3-isopropylmalate dehydrogenase; oxidoreductase, l 100.0
3dms_A427 Isocitrate dehydrogenase [NADP]; struc genomics, s 100.0
1a05_A358 IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxid 100.0
2e0c_A409 409AA long hypothetical NADP-dependent isocitrate 100.0
2iv0_A412 Isocitrate dehydrogenase; oxidoreductase, tricarbo 100.0
1tyo_A435 Isocitrate dehydrogenase; enzyme-ethenonadp comple 100.0
2d4v_A429 Isocitrate dehydrogenase; alpha and beta protein, 100.0
1hqs_A423 Isocitrate dehydrogenase; glyoxylate bypass, bsidh 100.0
3us8_A427 Isocitrate dehydrogenase [NADP]; PSI-biology, stru 100.0
2uxq_A402 Isocitrate dehydrogenase native; psychrophilic, co 100.0
1lwd_A413 Isocitrate dehydrogenase; tricarboxylic acid cycle 100.0
1zor_A399 Isocitrate dehydrogenase; wild type enzyme, CIS-pr 100.0
4aoy_A402 Isocitrate dehydrogenase [NADP]; oxidoreductase, t 100.0
2qfy_A427 Isocitrate dehydrogenase [NADP]; rossmann fold, ox 100.0
2b0t_A738 NADP isocitrate dehydrogenase; monomeric, IDH, oxi 97.26
1itw_A741 Isocitrate dehydrogenase; greece KEY motif, oxidor 97.25
3lxy_A334 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA 96.44
2hi1_A330 4-hydroxythreonine-4-phosphate dehydrogenase 2; py 94.34
4aty_A349 Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; o 92.41
1yxo_A328 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA 92.12
3tsn_A367 4-hydroxythreonine-4-phosphate dehydrogenase; stru 89.74
1vi1_A345 Fatty acid/phospholipid synthesis protein PLSX; st 87.08
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 83.27
2af4_C333 Phosphate acetyltransferase; PTA dimer with one CO 81.19
1u7n_A336 Fatty acid/phospholipid synthesis protein PLSX; st 80.6
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Back     alignment and structure
Probab=100.00  E-value=8.9e-111  Score=825.59  Aligned_cols=320  Identities=32%  Similarity=0.497  Sum_probs=306.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEEEEEccccCCCC---CChHHHHHHHHhcCeEEEcccccCCCC----c
Q psy559           43 RNAVTMLPGGGIGPELMSYVKEVFRYAGVPVDFETVQIDPKSDSN---DDLEYAITSIRRNGVAIKGNIETGSLD----S  115 (376)
Q Consensus        43 ~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~g~~~~~~---~~~~~~~~~~~~~dail~G~i~~p~~~----~  115 (376)
                      .++|++|||||||||||+++++||++++++++|+++++|.+++++   ..|++++++|+++|++||||+++|.++    +
T Consensus         1 ~~~I~vipGDGIGpEv~~~a~~vl~a~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gav~~P~~~~~~~~   80 (333)
T 1x0l_A            1 AYRICLIEGDGIGHEVIPAARRVLEATGLPLEFVEAEAGWETFERRGTSVPEETVEKILSCHATLFGAATSPTRKVPGFF   80 (333)
T ss_dssp             CEEEEEEEESTTHHHHHHHHHHHHHTTTCCEEEEEECCSHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCCSSCCTTCC
T ss_pred             CcEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEecchHHHHhhCCcCcHHHHHHHHHCCEEEECCccCCCCCCcCcc
Confidence            379999999999999999999999999999999999999988754   349999999999999999999999632    4


Q ss_pred             hhhHHHhhhhcccEee-----cccccccCCCCccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHHHHH
Q psy559          116 LWTLKLCRLILRVIAM-----MILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYA  190 (376)
Q Consensus       116 ~~~~~LR~~~ldLyan-----~~pg~~~~~~~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A  190 (376)
                      +.+++|| |+||||||     ++| ++++++++|+|||||||||+|+|.+++ .+++++++++|||+++|||+|+||+||
T Consensus        81 s~~l~lR-~~ldlyan~RP~~~~p-~~s~~~~vD~vivREnteg~Y~g~~~~-~~~~a~~~~~~T~~~~eRiar~AF~~A  157 (333)
T 1x0l_A           81 GAIRYLR-RRLDLYANVRPAKSRP-VPGSRPGVDLVIVRENTEGLYVEQERR-YLDVAIADAVISKKASERIGRAALRIA  157 (333)
T ss_dssp             CHHHHHH-HHTTCCEEEEEEECCS-STTCCSSCEEEEEEECGGGTCCCCEEE-ETTEEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred             ChhHHHH-HHcCCEEEEEEEeecc-CCCCCCCCCEEEEecCccceecccccc-CCCeEEEEEEecHHHHHHHHHHHHHHH
Confidence            5699999 99999999     789 999999999999999999999999877 578999999999999999999999999


Q ss_pred             HhCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHHHHHHHHhCCCCccEEecCCcchhhHhhhhhhhc
Q psy559          191 KKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLI  270 (376)
Q Consensus       191 ~~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~  270 (376)
                      ++|+|||||+|||+|||++|||||+++|+||+++||+|+++|++||++|||||++|++||||||+|||||||||++|+++
T Consensus       158 ~~r~rkkvt~v~KaNvlk~t~glf~~~~~eva~eyp~I~~~~~~vD~~~m~lv~~P~~FDVivt~NlfGDIlSD~aa~l~  237 (333)
T 1x0l_A          158 EGRPRKTLHIAHKANVLPLTQGLFLDTVKEVAKDFPLVNVQDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGLV  237 (333)
T ss_dssp             HTSTTCEEEEEECTTTCTTHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHT
T ss_pred             HhcCCCeEEEEecCccchhhhHHHHHHHHHHHHHCCCceEEEEEHHHHHHHHhhCcccceEEEEcCccchhHhHHHHhhc
Confidence            99988999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccccccCCCceeeccCCCCccccccCCCccchhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q psy559          271 GGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGHMKHASIIKLAIEKTINEDKIHTPDLGG  350 (376)
Q Consensus       271 GglGl~psanig~~~a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~lg~~~~A~~I~~AV~~~l~~~~~~T~DlgG  350 (376)
                      ||+||+||+|+|++.+|||| +|||||||||||+|||+|+|||++|||+|||++++|++|++||.+++++| ++|+||||
T Consensus       238 GslGl~psanig~~~a~fEp-~HGSAPdiaGk~iANP~A~IlS~ammL~~lg~~~~A~~Ie~Av~~~l~~g-~~T~DlgG  315 (333)
T 1x0l_A          238 GGLGLAPSGNIGDTTAVFEP-VHGSAPDIAGKGIANPTAAILSAAMMLDYLGEKEAAKRVEKAVDLVLERG-PRTPDLGG  315 (333)
T ss_dssp             TCSTTCEEEEECSSCEEEEE-SSCCCGGGTTSSCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-CCCGGGTC
T ss_pred             CCcccceeeEECCCceEEeC-CCCChhhhcCCCCcCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcC-CccCccCC
Confidence            99999999999999999999 99999999999999999999999999999999999999999999999987 99999999


Q ss_pred             CCCHHHHHHHHHHHHhh
Q psy559          351 TATSIDVVQNIIKLVQT  367 (376)
Q Consensus       351 ~~sT~e~~daV~~~l~~  367 (376)
                      ++||+||+|+|+++|+.
T Consensus       316 ~~~T~e~~daV~~~l~~  332 (333)
T 1x0l_A          316 DATTEAFTEAVVEALKS  332 (333)
T ss_dssp             CCCHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHhh
Confidence            99999999999999954
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Back     alignment and structure
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A Back     alignment and structure
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X* Back     alignment and structure
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A Back     alignment and structure
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A Back     alignment and structure
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A Back     alignment and structure
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1 Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Back     alignment and structure
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A* Back     alignment and structure
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus} Back     alignment and structure
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A Back     alignment and structure
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana} Back     alignment and structure
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A Back     alignment and structure
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ... Back     alignment and structure
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1 Back     alignment and structure
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Back     alignment and structure
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Back     alignment and structure
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Back     alignment and structure
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Back     alignment and structure
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Back     alignment and structure
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti} Back     alignment and structure
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Back     alignment and structure
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A* Back     alignment and structure
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima} Back     alignment and structure
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A Back     alignment and structure
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Back     alignment and structure
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A* Back     alignment and structure
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A* Back     alignment and structure
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A Back     alignment and structure
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium} Back     alignment and structure
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400} Back     alignment and structure
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa} Back     alignment and structure
>3tsn_A 4-hydroxythreonine-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: UNL; 2.63A {Campylobacter jejuni subsp} Back     alignment and structure
>1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, unknown function; HET: MSE; 2.95A {Bacillus subtilis} SCOP: c.77.1.4 Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>2af4_C Phosphate acetyltransferase; PTA dimer with one COA ligand bound PER monomer, acyltransferase; HET: COA; 2.15A {Methanosarcina thermophila} SCOP: c.77.1.5 PDB: 1qzt_A* 2af3_C* Back     alignment and structure
>1u7n_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, enterococcus faecalis V583, PSI, protein structure initiative; HET: MSE; 2.26A {Enterococcus faecalis} SCOP: c.77.1.4 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 376
d1vlca_362 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 1e-66
d1hqsa_423 c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Baci 7e-64
d1g2ua_345 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 1e-63
d1cnza_363 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 4e-63
d1pb1a_416 c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Esch 2e-61
d1v53a1356 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase 2e-59
d1w0da_337 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 5e-57
d1a05a_357 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 9e-57
d1wpwa_336 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 5e-54
d1lwda_413 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 9e-52
d1t0la_414 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 7e-50
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Length = 362 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: 3-isopropylmalate dehydrogenase, IPMDH
species: Thermotoga maritima [TaxId: 2336]

 Score =  213 bits (542), Expect = 1e-66
 Identities = 98/364 (26%), Positives = 159/364 (43%), Gaps = 39/364 (10%)

Query: 37  KAKYGGRNA-VTMLPGGGIGPELMSYVKEVFRYAGVP--VDFETVQIDPKSDSNDDL--- 90
           K  +   +  + +LPG GIGPE++    +V           FE V      D+ D     
Sbjct: 1   KIHHHHHHMKIAVLPGDGIGPEVVREALKVLEVVEKKTGKTFEKVFGHIGGDAIDRFGEP 60

Query: 91  --EYAITSIRRNGVAIKGNIETGSLDSLWT---------------------LKLCRLILR 127
             E              G++     D L                       ++  ++   
Sbjct: 61  LPEETKKICLEADAIFLGSVGGPKWDDLPPEKRPEIGGLLALRKMLNLYANIRPIKVYRS 120

Query: 128 VIAMMILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAF 187
           ++ +  L  +    G+D+V VR+ + G Y        +       I       R+++ AF
Sbjct: 121 LVHVSPLKEKVIGSGVDLVTVRELSYGVYYGQPRGLDEEKGFDTMIYDRKTVERIARTAF 180

Query: 188 EYAKKFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPK 247
           E AK   RKKVT+V KAN++  S  L+ ++  +VA+EYP++E   + +DN  MQL+  P 
Sbjct: 181 EIAKN-RRKKVTSVDKANVLY-SSMLWRKVVNEVAREYPDVELTHIYVDNAAMQLILKPS 238

Query: 248 QFDVMVMPNLYGAITSNVICGLIGGAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANP 307
           QFDV++  N++G I S+    L G  GL+   ++GD       G   +   IAGKNIANP
Sbjct: 239 QFDVILTTNMFGDILSDESAALPGSLGLLPSASFGDKNLYEPAG--GSAPDIAGKNIANP 296

Query: 308 IAMLNASVDMLEH-LGHMKHASIIKLAIEKTINEDKIHTPDLG----GTATSIDVVQNII 362
           IA + +   MLEH  G ++ A  I+ A+E  I E+   T D+        ++  +   I 
Sbjct: 297 IAQILSLAMMLEHSFGMVEEARKIERAVELVI-EEGYRTRDIAEDPEKAVSTSQMGDLIC 355

Query: 363 KLVQ 366
           K ++
Sbjct: 356 KKLE 359
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Length = 423 Back     information, alignment and structure
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermus thermophilus [TaxId: 274]} Length = 345 Back     information, alignment and structure
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} Length = 363 Back     information, alignment and structure
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Length = 416 Back     information, alignment and structure
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} Length = 356 Back     information, alignment and structure
>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Mycobacterium tuberculosis [TaxId: 1773]} Length = 337 Back     information, alignment and structure
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} Length = 357 Back     information, alignment and structure
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Length = 336 Back     information, alignment and structure
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 413 Back     information, alignment and structure
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 414 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query376
d1wpwa_336 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus 100.0
d1g2ua_345 3-isopropylmalate dehydrogenase, IPMDH {Thermus th 100.0
d1vlca_362 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga 100.0
d1cnza_363 3-isopropylmalate dehydrogenase, IPMDH {Salmonella 100.0
d1hqsa_423 Isocitrate dehydrogenase, ICDH {Bacillus subtilis 100.0
d1w0da_337 3-isopropylmalate dehydrogenase, IPMDH {Mycobacter 100.0
d1pb1a_416 Isocitrate dehydrogenase, ICDH {Escherichia coli [ 100.0
d1v53a1356 3-isopropylmalate dehydrogenase, IPMDH {Bacillus c 100.0
d1a05a_357 3-isopropylmalate dehydrogenase, IPMDH {Thiobacill 100.0
d1lwda_413 NADP-dependent isocitrate dehydrogenase {Pig (Sus 100.0
d1t0la_414 NADP-dependent isocitrate dehydrogenase {Human (Ho 100.0
d1itwa_740 Monomeric isocitrate dehydrogenase {Azotobacter vi 98.33
d1ptma_329 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 98.3
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: 3-isopropylmalate dehydrogenase, IPMDH
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=100.00  E-value=4.3e-102  Score=765.36  Aligned_cols=315  Identities=36%  Similarity=0.534  Sum_probs=300.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHHHHHc----CCCeeEEEEEccccCCCCC---ChHHHHHHHHhcCeEEEcccccCCCCch
Q psy559           44 NAVTMLPGGGIGPELMSYVKEVFRYA----GVPVDFETVQIDPKSDSND---DLEYAITSIRRNGVAIKGNIETGSLDSL  116 (376)
Q Consensus        44 ~~I~vipGDGIGpEV~~aa~~Vl~a~----~~~ie~~~~~~g~~~~~~~---~~~~~~~~~~~~dail~G~i~~p~~~~~  116 (376)
                      |+|++|||||||||||+++++||+++    +++++|+++++|..+++++   .|+++++.|+++|++||||+++|.  .+
T Consensus         2 y~I~vipGDGIGpEv~~~~~~Vl~a~~~~~~~~ie~~~~~~G~~~~~~~G~~lp~~~~~~~~~~da~l~G~~~~~~--~~   79 (336)
T d1wpwa_           2 FTVALIQGDGIGPEIVSKSKRILAKINELYSLPIEYIEVEAGDRALARYGEALPKDSLKIIDKADIILKGPVGESA--AD   79 (336)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHHHHHHHHHTTCCEEEEEECCSHHHHHHSSSSSCHHHHHHHHTCSEEEECCCCTTH--HH
T ss_pred             CEEEEECCCcchHHHHHHHHHHHHHHHHhcCCCEEEEEEeccHHHHHHhCCcCCHHHHHHHHhcCeeEeccccccc--cc
Confidence            89999999999999999999999986    6999999999999887554   389999999999999999998873  35


Q ss_pred             hhHHHhhhhcccEee-----cccccccCCCCccEEEEccCCcceeecccccccCceEEEeEeecHHHHHHHHHHHHHHHH
Q psy559          117 WTLKLCRLILRVIAM-----MILSVRCRQQGIDIVIVRQNTEGEYAMLEHESVDGVVESMKIITAANSYRLSKYAFEYAK  191 (376)
Q Consensus       117 ~~~~LR~~~ldLyan-----~~pg~~~~~~~iDivivREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~  191 (376)
                      .++.|| ++||||+|     ++||++++++++|++||||||||+|+|.+++..++++++++++||.++|||+|+||+||+
T Consensus        80 ~~l~LR-~~ldlyanvRP~~~~pg~~~~~~~iDivIvREnteG~Y~G~~~~~~~~~~~~~~~~tr~~~eRI~r~AFe~A~  158 (336)
T d1wpwa_          80 VVVKLR-QIYDMYANIRPAKSIPGIDTKYGNVDILIVRENTEDLYKGFEHIVSDGVAVGMKIITRFASERIAKVGLNFAL  158 (336)
T ss_dssp             HHHHHH-HTTTCCEEEEEEECCTTTCCSCSCCEEEEEEECSSBTTTCCEEEEETTEEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred             chHHHh-hhccceeeeeeeeccCCCccccCCccEEEEehhhcCcccCcccccccccceeEEEEeeechhhhhhhhHHHHH
Confidence            689999 99999999     889999999999999999999999999999989999999999999999999999999999


Q ss_pred             hCCCCcEEEEecCCccccchHHHHHHHHHHHhhCCCeeeeeeeHHHHHHHHHhCCCCccEEecCCcchhhHhhhhhhhcC
Q psy559          192 KFGRKKVTTVHKANIMKISDGLFLEISRKVAKEYPEIEHNDMIIDNTCMQLVSNPKQFDVMVMPNLYGAITSNVICGLIG  271 (376)
Q Consensus       192 ~r~rk~Vt~v~KaNvl~~sdglf~~~~~eva~eyP~I~~e~~~vD~~~~~Lv~~P~~fdViV~~NlfGDILSDlaa~l~G  271 (376)
                      +| +||||++||+|+|+.++++|+++++++  .||+|++++++||+++|+||++|++||||||+|||||||||++++++|
T Consensus       159 ~r-~~kvt~v~Kanvl~~~~g~f~~~~~~v--~~~~i~~~~~~vD~~~~~lv~~P~~fdViv~~Nl~GDIlSDl~a~l~G  235 (336)
T d1wpwa_         159 RR-RKKVTCVHKANVMRITDGLFAEACRSV--LKGKVEYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAG  235 (336)
T ss_dssp             TT-TSEEEEEECTTTCTTHHHHHHHHHHHH--HTTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHT
T ss_pred             hc-CCeEEEEeccceeeeecccceeEEEEe--eeeeEEEeehhhhhhHHhhccCCccceEEEehhHHHHhhhHHHHHhhC
Confidence            86 789999999999999999999999998  589999999999999999999999999999999999999999999999


Q ss_pred             CcccccccccCCCceeeccCCCCccccccCCCccchhHHHHHHHHHHHHcCc-------HHHHHHHHHHHHHHHHcCCCC
Q psy559          272 GAGLISGKNYGDHYAVFEPGTRNTGTAIAGKNIANPIAMLNASVDMLEHLGH-------MKHASIIKLAIEKTINEDKIH  344 (376)
Q Consensus       272 glGl~psanig~~~a~FEp~~HGsApdiaGk~iANP~a~IlS~amML~~lg~-------~~~A~~I~~AV~~~l~~~~~~  344 (376)
                      |+||+||+|+|+++++||| +|||||||+|||+|||+|+|||++|||+|||.       .++|++|++||.+++++++++
T Consensus       236 ~lGl~ps~nig~~~a~fEp-~HGsApdiaGk~iaNP~A~Ils~ammL~~lg~~~~~~~~~~~a~~ie~Av~~v~~~~~~~  314 (336)
T d1wpwa_         236 SLGIAPSANIGDKKALFEP-VHGAAFDIAGKNIGNPTAFLLSVSMMYERMYELSNDDRYIKASRALENAIYLVYKERKAL  314 (336)
T ss_dssp             CGGGCEEEEECSSCEEEEE-SSCCCTTTTTSSCCCTHHHHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred             CceeccccccCCCceeccc-ccccccccCCCCCCChHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHhcCCcc
Confidence            9999999999999999999 99999999999999999999999999999974       478999999999999988999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHH
Q psy559          345 TPDLGGTATSIDVVQNIIKLV  365 (376)
Q Consensus       345 T~DlgG~~sT~e~~daV~~~l  365 (376)
                      |+||||++||+||+|+|+++|
T Consensus       315 T~DlGG~~tT~e~~davi~~L  335 (336)
T d1wpwa_         315 TPDVGGNATTDDLINEIYNKL  335 (336)
T ss_dssp             CGGGTCCCCHHHHHHHHHHSC
T ss_pred             CcccCCCccHHHHHHHHHHhc
Confidence            999999999999999999876
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} Back     information, alignment and structure
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} Back     information, alignment and structure
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1ptma_ c.77.1.3 (A:) 4-hydroxythreonine-4-phosphate dehydrogenase PdxA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure