Psyllid ID: psy5619

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60------
Protein Sequence
MDECYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQNFGATRKIILGK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccHHHHHccccEEEEccccccccccccccccccEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHHccccccHHHHHccccEEEEEccccccccccccccccccEEEccc
Coil and Loop (DISEMBL)
mdecykhpefrgpflgpkpseenkrfftEDQLRAGEGmiglqagtnklasqsgqnfgatrkiilgk
Flexible Loop (DISEMBL)
mdecykhpefrgpflgpkpseeNKRFFTEDQLRAGEGMIGLQAGTnklasqsgqnfgatrkiilgk
Low Complexity Region (SEG)
MDECYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQNFGATRKIILGK
Disordered region (IsUnstruct)
******************************************************************
Disordered Region (DISOPRED)
*********FRGPFLGPKPS****************GMIGLQAGTNKLASQSGQNFGATRKII***
Disordered Region (DISEMBL)
MDECYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQNFGATRKIILGK
Disordered Region (DISPRO)
***CYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQNFGATRKIILG*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDECYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQNFGATRKIILGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	66	2.2.26 [Sep-21-2011]
P14318	184	Muscle-specific protein 2	yes	N/A	0.939	0.336	0.677	3e-19
Q24799	190	Myophilin OS=Echinococcus	N/A	N/A	0.909	0.315	0.566	3e-13
P19966	200	Transgelin OS=Gallus gall	yes	N/A	0.696	0.23	0.543	6e-07
Q5E9F5	199	Transgelin-2 OS=Bos tauru	yes	N/A	0.772	0.256	0.480	3e-06
Q5XFX0	199	Transgelin-2 OS=Rattus no	yes	N/A	0.772	0.256	0.480	2e-05
Q9WVA4	199	Transgelin-2 OS=Mus muscu	yes	N/A	0.772	0.256	0.480	2e-05
P37802	199	Transgelin-2 OS=Homo sapi	yes	N/A	0.772	0.256	0.480	2e-05
Q5R6R2	199	Transgelin-3 OS=Pongo abe	no	N/A	0.863	0.286	0.437	3e-05
P37805	199	Transgelin-3 OS=Rattus no	no	N/A	0.863	0.286	0.437	3e-05
Q9R1Q8	199	Transgelin-3 OS=Mus muscu	no	N/A	0.863	0.286	0.437	3e-05

>sp|P14318|MP20_DROME Muscle-specific protein 20 OS=Drosophila melanogaster GN=Mp20 PE=2 SV=2

 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 42/62 (67%), Positives = 55/62 (88%)

Query: 5   YKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQNFGATRKIIL 64
           YKH +F+GPFLGPKP++E KR FTE+QL+AG+ ++GLQAG+NK A+Q+GQN GA RKI+L
Sbjct: 123 YKHADFKGPFLGPKPADECKRDFTEEQLKAGQTIVGLQAGSNKGATQAGQNLGAGRKILL 182

Query: 65  GK 66
           GK
Sbjct: 183 GK 184

Drosophila melanogaster (taxid: 7227)

>sp|Q24799|MYPH_ECHGR Myophilin OS=Echinococcus granulosus PE=2 SV=1

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 42/60 (70%)

Query: 4   CYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQNFGATRKII 63
           C  HPE+ GP LGPK + ENKR FTE QLR G+ ++ LQ G+NK ASQ+G N G  R I+
Sbjct: 130 CQTHPEYSGPVLGPKLATENKREFTEQQLREGQNVVSLQYGSNKGASQAGINMGKQRMIM 189

Echinococcus granulosus (taxid: 6210)

>sp|P19966|TAGL_CHICK Transgelin OS=Gallus gallus GN=TAGLN PE=1 SV=3

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/46 (54%), Positives = 36/46 (78%)

Query: 18  KPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQNFGATRKII 63
           K ++E+KR F+E QL+ G+ +IGLQ GTNK ASQ+G ++G  R+II
Sbjct: 154 KKAQEHKREFSESQLKEGKNIIGLQMGTNKGASQAGMSYGRPRQII 199

Actin cross-linking/gelling protein.

Gallus gallus (taxid: 9031)

>sp|Q5E9F5|TAGL2_BOVIN Transgelin-2 OS=Bos taurus GN=TAGLN2 PE=2 SV=3

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 38/52 (73%), Gaps = 1/52 (1%)

Query: 13  PFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQN-FGATRKII 63
           P   PK S+EN R+F+++QL+ G+ +IGLQ GTN+ ASQ+G   +G  R+I+
Sbjct: 148 PNWFPKKSKENPRYFSDNQLQEGKNVIGLQMGTNRGASQAGMTGYGMPRQIL 199

Bos taurus (taxid: 9913)

>sp|Q5XFX0|TAGL2_RAT Transgelin-2 OS=Rattus norvegicus GN=Tagln2 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 37/52 (71%), Gaps = 1/52 (1%)

Query: 13  PFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQN-FGATRKII 63
           P   PK S+EN R F+++QL+ G+ +IGLQ GTN+ ASQ+G   +G  R+I+
Sbjct: 148 PNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNRGASQAGMTGYGMPRQIL 199

Rattus norvegicus (taxid: 10116)

>sp|Q9WVA4|TAGL2_MOUSE Transgelin-2 OS=Mus musculus GN=Tagln2 PE=1 SV=4

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 37/52 (71%), Gaps = 1/52 (1%)

Query: 13  PFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQN-FGATRKII 63
           P   PK S+EN R F+++QL+ G+ +IGLQ GTN+ ASQ+G   +G  R+I+
Sbjct: 148 PNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNRGASQAGMTGYGMPRQIL 199

Mus musculus (taxid: 10090)

>sp|P37802|TAGL2_HUMAN Transgelin-2 OS=Homo sapiens GN=TAGLN2 PE=1 SV=3

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 37/52 (71%), Gaps = 1/52 (1%)

Query: 13  PFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQN-FGATRKII 63
           P   PK S+EN R F+++QL+ G+ +IGLQ GTN+ ASQ+G   +G  R+I+
Sbjct: 148 PNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNRGASQAGMTGYGMPRQIL 199

Homo sapiens (taxid: 9606)

>sp|Q5R6R2|TAGL3_PONAB Transgelin-3 OS=Pongo abelii GN=TAGLN3 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 7/64 (10%)

Query: 2   DECYKHPEFRG-PFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQN-FGAT 59
           D CY     RG P    + +++N+R F+E+QLR G+ +IGLQ G+NK ASQ+G   +G  
Sbjct: 141 DGCY-----RGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGSNKGASQAGMTGYGMP 195

Query: 60  RKII 63
           R+I+
Sbjct: 196 RQIM 199

Pongo abelii (taxid: 9601)

>sp|P37805|TAGL3_RAT Transgelin-3 OS=Rattus norvegicus GN=Tagln3 PE=1 SV=2

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 7/64 (10%)

Query: 2   DECYKHPEFRG-PFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQN-FGAT 59
           D CY     RG P    + +++N+R F+E+QLR G+ +IGLQ G+NK ASQ+G   +G  
Sbjct: 141 DGCY-----RGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGSNKGASQAGMTGYGMP 195

Query: 60  RKII 63
           R+I+
Sbjct: 196 RQIM 199

Rattus norvegicus (taxid: 10116)

>sp|Q9R1Q8|TAGL3_MOUSE Transgelin-3 OS=Mus musculus GN=Tagln3 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 7/64 (10%)

Query: 2   DECYKHPEFRG-PFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQN-FGAT 59
           D CY     RG P    + +++N+R F+E+QLR G+ +IGLQ G+NK ASQ+G   +G  
Sbjct: 141 DGCY-----RGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGSNKGASQAGMTGYGMP 195

Query: 60  RKII 63
           R+I+
Sbjct: 196 RQIM 199

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	66
383866289	1543	PREDICTED: LOW QUALITY PROTEIN: mitogen-	0.939	0.040	0.822	2e-24
307168035	1419	Mitogen-activated protein kinase kinase	0.924	0.042	0.836	4e-24
307208770	203	Muscle-specific protein 20 [Harpegnathos	0.939	0.305	0.838	1e-23
380024140	1525	PREDICTED: mitogen-activated protein kin	0.924	0.04	0.819	1e-23
114051920	182	muscular protein 20 [Bombyx mori] gi|951	0.939	0.340	0.854	2e-23
328783588	1501	PREDICTED: mitogen-activated protein kin	0.924	0.040	0.819	2e-23
340726457	1549	PREDICTED: mitogen-activated protein kin	0.924	0.039	0.803	4e-23
157118476	241	calponin/transgelin [Aedes aegypti] gi|1	0.954	0.261	0.793	4e-23
170044936	202	calponin/transgelin [Culex quinquefascia	0.954	0.311	0.793	4e-23
347964432	182	AGAP000748-PA [Anopheles gambiae str. PE	0.954	0.346	0.793	5e-23

>gi|383866289|ref|XP_003708603.1| PREDICTED: LOW QUALITY PROTEIN: mitogen-activated protein kinase kinase kinase 15-like [Megachile rotundata]

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/62 (82%), Positives = 60/62 (96%)

Query: 5   YKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQNFGATRKIIL 64
           Y+HPE+RGP+LGPKP+EENKR FTE+QLRAGEG+IGLQAGTNK A+Q+GQNFGATRKI+L
Sbjct: 197 YRHPEWRGPWLGPKPAEENKRHFTEEQLRAGEGLIGLQAGTNKGATQAGQNFGATRKILL 256

Query: 65  GK 66
           GK
Sbjct: 257 GK 258

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307168035|gb|EFN61359.1| Mitogen-activated protein kinase kinase kinase 15 [Camponotus floridanus]

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 51/61 (83%), Positives = 59/61 (96%)

Query: 5   YKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQNFGATRKIIL 64
           YKHPE+RGP+LGPKP+EENKR FTE+QLRAGEG+IGLQAGTNK A+Q+GQNFGATRKI+L
Sbjct: 85  YKHPEWRGPWLGPKPAEENKRSFTEEQLRAGEGLIGLQAGTNKGATQAGQNFGATRKILL 144

Query: 65  G 65
           G
Sbjct: 145 G 145

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307208770|gb|EFN86047.1| Muscle-specific protein 20 [Harpegnathos saltator]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/62 (83%), Positives = 60/62 (96%)

Query: 5   YKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQNFGATRKIIL 64
           YKHPE+RGP+LGPKP+EENKR FTE+QLRAGEG+IGLQAGTNK A+Q+GQNFGATRKI+L
Sbjct: 142 YKHPEWRGPWLGPKPAEENKRAFTEEQLRAGEGLIGLQAGTNKGATQAGQNFGATRKILL 201

Query: 65  GK 66
           GK
Sbjct: 202 GK 203

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380024140|ref|XP_003695864.1| PREDICTED: mitogen-activated protein kinase kinase kinase 15-like [Apis florea]

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/61 (81%), Positives = 58/61 (95%)

Query: 5   YKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQNFGATRKIIL 64
           YKHPE+RGP+LGP+P+EENKR FTE+QLRAGEG IGLQAGTNK A+Q+GQNFGATRKI+L
Sbjct: 186 YKHPEWRGPWLGPRPAEENKRHFTEEQLRAGEGYIGLQAGTNKGATQAGQNFGATRKILL 245

Query: 65  G 65
           G
Sbjct: 246 G 246

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114051920|ref|NP_001040437.1| muscular protein 20 [Bombyx mori] gi|95102890|gb|ABF51386.1| muscular protein 20 [Bombyx mori]

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/62 (85%), Positives = 58/62 (93%)

Query: 5   YKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQNFGATRKIIL 64
           YKHPE+RGPFLGPKP+EENKR F+ED LRAGE +IGLQAGTNK ASQSGQNFGA+RKIIL
Sbjct: 121 YKHPEWRGPFLGPKPAEENKRAFSEDVLRAGESVIGLQAGTNKWASQSGQNFGASRKIIL 180

Query: 65  GK 66
           GK
Sbjct: 181 GK 182

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783588|ref|XP_003250315.1| PREDICTED: mitogen-activated protein kinase kinase kinase 15-like [Apis mellifera]

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/61 (81%), Positives = 58/61 (95%)

Query: 5   YKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQNFGATRKIIL 64
           YKHPE+RGP+LGP+P+EENKR FTE+QLRAGEG IGLQAGTNK A+Q+GQNFGATRKI+L
Sbjct: 161 YKHPEWRGPWLGPRPAEENKRHFTEEQLRAGEGYIGLQAGTNKGATQAGQNFGATRKILL 220

Query: 65  G 65
           G
Sbjct: 221 G 221

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340726457|ref|XP_003401574.1| PREDICTED: mitogen-activated protein kinase kinase kinase 15-like [Bombus terrestris]

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 49/61 (80%), Positives = 58/61 (95%)

Query: 5   YKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQNFGATRKIIL 64
           Y+HPE+RGP+LGP+P+EENKR FTE+QLRAGEG IGLQAGTNK A+Q+GQNFGATRKI+L
Sbjct: 198 YRHPEWRGPWLGPRPAEENKRNFTEEQLRAGEGYIGLQAGTNKGATQAGQNFGATRKILL 257

Query: 65  G 65
           G
Sbjct: 258 G 258

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157118476|ref|XP_001659125.1| calponin/transgelin [Aedes aegypti] gi|108875707|gb|EAT39932.1| AAEL008315-PA [Aedes aegypti]

 Score =  111 bits (278), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 50/63 (79%), Positives = 60/63 (95%)

Query: 4   CYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQNFGATRKII 63
           CY+HPEFRGP+LGP+PSEEN+R FTE+QLRAGEG+IGLQAG+NK A+Q+G NFGATRKI+
Sbjct: 179 CYRHPEFRGPYLGPRPSEENRREFTEEQLRAGEGLIGLQAGSNKGATQAGLNFGATRKIL 238

Query: 64  LGK 66
           LGK
Sbjct: 239 LGK 241

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170044936|ref|XP_001850084.1| calponin/transgelin [Culex quinquefasciatus] gi|167868019|gb|EDS31402.1| calponin/transgelin [Culex quinquefasciatus]

 Score =  111 bits (278), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 50/63 (79%), Positives = 60/63 (95%)

Query: 4   CYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQNFGATRKII 63
           CY+HPEFRGP+LGP+PSEEN+R FTE+QLRAGEG+IGLQAG+NK A+Q+G NFGATRKI+
Sbjct: 140 CYRHPEFRGPYLGPRPSEENRREFTEEQLRAGEGLIGLQAGSNKGATQAGLNFGATRKIL 199

Query: 64  LGK 66
           LGK
Sbjct: 200 LGK 202

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347964432|ref|XP_311283.5| AGAP000748-PA [Anopheles gambiae str. PEST] gi|347964434|ref|XP_003437090.1| AGAP000748-PB [Anopheles gambiae str. PEST] gi|333467529|gb|EAA06856.5| AGAP000748-PA [Anopheles gambiae str. PEST] gi|333467530|gb|EGK96593.1| AGAP000748-PB [Anopheles gambiae str. PEST]

 Score =  111 bits (278), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 50/63 (79%), Positives = 60/63 (95%)

Query: 4   CYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQNFGATRKII 63
           CYKHPEFRGP+LGP+P+EEN+R FTE+QLRAGEG+IGLQAG+NK A+Q+G NFGATRKI+
Sbjct: 120 CYKHPEFRGPYLGPRPAEENRREFTEEQLRAGEGLIGLQAGSNKGATQAGLNFGATRKIL 179

Query: 64  LGK 66
           LGK
Sbjct: 180 LGK 182

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	66
FB|FBgn0002789	184	Mp20 "Muscle protein 20" [Dros	0.939	0.336	0.677	1.9e-19
FB|FBgn0038774	169	CG5023 [Drosophila melanogaste	0.833	0.325	0.589	6.4e-12
FB|FBgn0035499	188	Chd64 "Chd64" [Drosophila mela	0.833	0.292	0.527	5.2e-10
ZFIN|ZDB-GENE-020802-2	201	tagln2 "transgelin 2" [Danio r	0.818	0.268	0.5	4.7e-09
UNIPROTKB|P19966	200	TAGLN "Transgelin" [Gallus gal	0.696	0.23	0.543	2e-08
UNIPROTKB|Q5E9F5	199	TAGLN2 "Transgelin-2" [Bos tau	0.818	0.271	0.482	4.2e-08
UNIPROTKB|E1C7W7	199	TAGLN3 "Uncharacterized protei	0.878	0.291	0.460	5.3e-08
WB|WBGene00000777	192	cpn-1 [Caenorhabditis elegans	0.696	0.239	0.521	6.8e-08
UNIPROTKB|F1P6P2	199	TAGLN2 "Uncharacterized protei	0.818	0.271	0.482	2e-07
UNIPROTKB|P37802	199	TAGLN2 "Transgelin-2" [Homo sa	0.818	0.271	0.482	2e-07

FB|FBgn0002789 Mp20 "Muscle protein 20" [Drosophila melanogaster (taxid:7227)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 42/62 (67%), Positives = 55/62 (88%)

Query:     5 YKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQNFGATRKIIL 64
             YKH +F+GPFLGPKP++E KR FTE+QL+AG+ ++GLQAG+NK A+Q+GQN GA RKI+L
Sbjct:   123 YKHADFKGPFLGPKPADECKRDFTEEQLKAGQTIVGLQAGSNKGATQAGQNLGAGRKILL 182

Query:    65 GK 66
             GK
Sbjct:   183 GK 184

GO:0005509 "calcium ion binding" evidence=ISS

GO:0043292 "contractile fiber" evidence=NAS

GO:0003779 "actin binding" evidence=ISS

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0007155 "cell adhesion" evidence=IMP

GO:0007520 "myoblast fusion" evidence=IMP

FB|FBgn0038774 CG5023 [Drosophila melanogaster (taxid:7227)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 33/56 (58%), Positives = 41/56 (73%)

Query:     6 KHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQN-FGATR 60
             KHPE+ GP LGPK +++N+R FTE+QLRA EG + LQ G NK ASQ+G    G TR
Sbjct:   112 KHPEYTGPTLGPKMADKNERSFTEEQLRAHEGELNLQMGFNKGASQAGHGGMGNTR 167

GO:0003779 "actin binding" evidence=ISS

GO:0031032 "actomyosin structure organization" evidence=IEA

FB|FBgn0035499 Chd64 "Chd64" [Drosophila melanogaster (taxid:7227)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 29/55 (52%), Positives = 39/55 (70%)

Query:     6 KHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQNFGATR 60
             K   F  P +GPK +++N R F+++QLRAG  +I LQ G+NK A+QSG NFG TR
Sbjct:   132 KASNFNKPSIGPKEADKNVRNFSDEQLRAGANVISLQYGSNKGATQSGINFGNTR 186

GO:0005865 "striated muscle thin filament" evidence=ISS

GO:0006939 "smooth muscle contraction" evidence=ISS

GO:0003779 "actin binding" evidence=ISS

GO:0035626 "juvenile hormone mediated signaling pathway" evidence=IMP

GO:0070594 "juvenile hormone response element binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-020802-2 tagln2 "transgelin 2" [Danio rerio (taxid:7955)]

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 28/56 (50%), Positives = 41/56 (73%)

Query:    10 FRG-PFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQN-FGATRKII 63
             +RG P   PK S+EN+R F+E+Q++ G+ +IGLQ GTNK ASQ+G   +G  R+I+
Sbjct:   143 YRGDPAWFPKKSQENRREFSEEQMKEGQSVIGLQMGTNKGASQAGMTGYGRPRQIL 198

GO:0007517 "muscle organ development" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IMP

GO:0003779 "actin binding" evidence=ISS

GO:0015629 "actin cytoskeleton" evidence=IMP

GO:0000902 "cell morphogenesis" evidence=IMP

UNIPROTKB|P19966 TAGLN "Transgelin" [Gallus gallus (taxid:9031)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 25/46 (54%), Positives = 36/46 (78%)

Query:    18 KPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQNFGATRKII 63
             K ++E+KR F+E QL+ G+ +IGLQ GTNK ASQ+G ++G  R+II
Sbjct:   154 KKAQEHKREFSESQLKEGKNIIGLQMGTNKGASQAGMSYGRPRQII 199

GO:0007517 "muscle organ development" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q5E9F5 TAGLN2 "Transgelin-2" [Bos taurus (taxid:9913)]

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 27/56 (48%), Positives = 40/56 (71%)

Query:    10 FRG-PFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQN-FGATRKII 63
             F G P   PK S+EN R+F+++QL+ G+ +IGLQ GTN+ ASQ+G   +G  R+I+
Sbjct:   144 FSGDPNWFPKKSKENPRYFSDNQLQEGKNVIGLQMGTNRGASQAGMTGYGMPRQIL 199

GO:0031965 "nuclear membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007517 "muscle organ development" evidence=IEA

UNIPROTKB|E1C7W7 TAGLN3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 29/63 (46%), Positives = 41/63 (65%)

Query:     2 DECYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQN-FGATR 60
             D CYK      P    + +++N+R F+E+QLR G+ +IGLQ G+NK ASQSG   +G  R
Sbjct:   141 DGCYKGD----PSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGSNKGASQSGMTGYGMPR 196

Query:    61 KII 63
             +II
Sbjct:   197 QII 199

GO:0007517 "muscle organ development" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

WB|WBGene00000777 cpn-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 24/46 (52%), Positives = 35/46 (76%)

Query:    15 LGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQNFGATR 60
             LGPK ++ ++R +T++QL+AG  +IGLQ G+NK A+ SG N G TR
Sbjct:   145 LGPKEAQGDRREWTDEQLKAGHNVIGLQMGSNKGATASGLNMGNTR 190

GO:0007067 "mitosis" evidence=IMP

UNIPROTKB|F1P6P2 TAGLN2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 119 (46.9 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 27/56 (48%), Positives = 39/56 (69%)

Query:    10 FRG-PFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQN-FGATRKII 63
             F G P   PK S+EN R F+++QL+ G+ +IGLQ GTN+ ASQ+G   +G  R+I+
Sbjct:   144 FSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNRGASQAGMTGYGMPRQIL 199

GO:0031965 "nuclear membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007517 "muscle organ development" evidence=IEA

UNIPROTKB|P37802 TAGLN2 "Transgelin-2" [Homo sapiens (taxid:9606)]

 Score = 119 (46.9 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 27/56 (48%), Positives = 39/56 (69%)

Query:    10 FRG-PFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQN-FGATRKII 63
             F G P   PK S+EN R F+++QL+ G+ +IGLQ GTN+ ASQ+G   +G  R+I+
Sbjct:   144 FSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNRGASQAGMTGYGMPRQIL 199

GO:0007517 "muscle organ development" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P14318	MP20_DROME	No assigned EC number	0.6774	0.9393	0.3369	yes	N/A
P19966	TAGL_CHICK	No assigned EC number	0.5434	0.6969	0.23	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	66
COG5199	178	COG5199, SCP1, Calponin [Cytoskeleton]	5e-06
pfam00402	26	pfam00402, Calponin, Calponin family repeat	7e-04

>gnl|CDD|227526 COG5199, SCP1, Calponin [Cytoskeleton]

 Score = 41.1 bits (96), Expect = 5e-06
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 6   KHPEFRGPFLGPKPSEENKRFFT-EDQLRAGEGMIGLQAGTNKLASQSGQ 54
           +   F GPFLGP  + +  R F+ ++ L   +G I LQ G + L+ QS +
Sbjct: 119 ERM-FSGPFLGPHLATKKPRVFSSQEVLDRSKGAIHLQYGYSDLSEQSTE 167

Length = 178

>gnl|CDD|109460 pfam00402, Calponin, Calponin family repeat

 Score = 32.8 bits (75), Expect = 7e-04
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 39 IGLQAGTNKLASQSGQN-FGATRKII 63
          + LQ GTNK ASQ G   +G  R+I 
Sbjct: 1  LSLQMGTNKGASQKGMTAYGLPRQIY 26

Length = 26

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	66
KOG2046|consensus	193		99.85
PF00402	26	Calponin: Calponin family repeat; InterPro: IPR000	99.72
COG5199	178	SCP1 Calponin [Cytoskeleton]	98.55

>KOG2046|consensus

Probab=99.85  E-value=5.8e-22  Score=138.50  Aligned_cols=63  Identities=46%  Similarity=0.714  Sum_probs=57.6

Q ss_pred             cccccCCCCCCCccCccCCccccccCcHHHHhcccCeeeecccccccccccCCC-CCccccccc
Q psy5619           2 DECYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQN-FGATRKIIL   64 (66)
Q Consensus         2 ~~~~~~~~~~gp~~G~K~a~k~~R~fteeql~~g~~ii~LQ~GtNk~ASQ~Gmt-~G~~R~i~~   64 (66)
                      |+|+++--+.+|.||||+|++++|+|++++|++|+++|+|||||||||||+||+ ||++|++++
T Consensus       127 ~~a~~~~~~~~~~~g~k~a~kq~r~f~~~~lk~g~~vi~LQmGtnk~asq~g~~~~G~~R~l~d  190 (193)
T KOG2046|consen  127 RKAQKKGLFSGPGIGPKLAEKQPREFTDEQLKAGQNVIGLQMGTNKGASQAGMTAYGTRRHLYD  190 (193)
T ss_pred             HHHhhccccCCCCcCCchhhcCcccCCHHHHhcccceEEEeeeccchhhcccccccccccccCC
Confidence            456666446789999999999999999999999999999999999999999999 999998875

>PF00402 Calponin: Calponin family repeat; InterPro: IPR000557 Calponin [, ] is a thin filament-associated protein that is implicated in the regulation and modulation of smooth muscle contraction

Probab=99.72  E-value=1.7e-18  Score=87.99  Aligned_cols=25  Identities=68%  Similarity=0.890  Sum_probs=23.9

Q ss_pred             eeecccccccccccCCC-CCcccccc
Q psy5619          39 IGLQAGTNKLASQSGQN-FGATRKII   63 (66)
Q Consensus        39 i~LQ~GtNk~ASQ~Gmt-~G~~R~i~   63 (66)
                      |+|||||||||||+||| ||++|||+
T Consensus         1 i~LQ~GtNk~aSQ~Gmt~~G~~R~i~   26 (26)
T PF00402_consen    1 IGLQMGTNKGASQSGMTAFGTPRHIY   26 (26)
T ss_pred             CcccccccccccccCCccCCCCcccC
Confidence            79999999999999998 99999985

It is capable of binding to actin, calmodulin, troponin C and tropomyosin. The interaction of calponin with actin inhibits the actomyosin MgATPase activity. Calponin is a basic protein of approximately 34 Kd. Multiple isoforms are found in smooth muscles. Calponin contains three repeats of a well conserved 26 amino acid domain. Such a domain is also found in vertebrate smooth muscle protein (SM22 or transgelin), and a number of other proteins whose physiological role is not yet established, including Drosophila synchronous flight muscle protein SM20, Caenorhabditis elegans unc-87 protein [], rat neuronal protein NP25 [], and an Onchocerca volvulus antigen [].

>COG5199 SCP1 Calponin [Cytoskeleton]

Probab=98.55  E-value=4.9e-08  Score=67.62  Aligned_cols=61  Identities=33%  Similarity=0.550  Sum_probs=53.6

Q ss_pred             cccccCCCCCCCccCccCCccccccC-cHHHHhcccCeeeecccccccccccCCC--CCccccc
Q psy5619           2 DECYKHPEFRGPFLGPKPSEENKRFF-TEDQLRAGEGMIGLQAGTNKLASQSGQN--FGATRKI   62 (66)
Q Consensus         2 ~~~~~~~~~~gp~~G~K~a~k~~R~f-teeql~~g~~ii~LQ~GtNk~ASQ~Gmt--~G~~R~i   62 (66)
                      |-|++.--|.+|.+||+.|+|.+|.| ..++|..+++.|.||||.-+.++|++=-  ++.+|.+
T Consensus       114 Rya~K~~~~~~p~lGP~LatKkprvfS~q~~l~~~~g~~~lqyGy~d~~~q~tek~a~~~rrD~  177 (178)
T COG5199         114 RYAQKERMFSGPFLGPHLATKKPRVFSSQEVLDRSKGAIHLQYGYSDLSEQSTEKGASNVRRDL  177 (178)
T ss_pred             HHHHHhcCCCCCccCccccccCCcccccHHHHhhcccceEeeecccccchhcccccccceecCC
Confidence            44666646789999999999999999 8899999999999999999999999875  7777765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	66
1wyn_A	146	Calponin-2; CH domain, F-actin binding, all alpha	9e-06

>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 146

 Score = 39.5 bits (92), Expect = 9e-06
 Identities = 6/26 (23%), Positives = 9/26 (34%)

Query: 4   CYKHPEFRGPFLGPKPSEENKRFFTE 29
                   G  +G K SE+ +R    
Sbjct: 119 AKTKGLQSGVDIGVKYSEKQERSGPS 144

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	66
2rr8_A	190	Iqgap1 protein; F-actin binding protein, protein b	98.54
1wyn_A	146	Calponin-2; CH domain, F-actin binding, all alpha	97.82
1p5s_A	203	RAS GTPase-activating-like protein RNG2; alpha-hel	97.1
1p2x_A	159	RNG2 protein, RAS GTPase-activating-like protein;	96.88
1wym_A	155	Transgelin-2; CH domain, F-actin binding, all heli	95.07
1ujo_A	144	Transgelin; CH domain, actin binding, structural g	83.18

>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens}

Probab=98.54  E-value=1.5e-08  Score=68.70  Aligned_cols=35  Identities=23%  Similarity=0.258  Sum_probs=31.7

Q ss_pred             cCccCCcc-ccccCcHHHHhcccCe---eeecccccccc
Q psy5619          15 LGPKPSEE-NKRFFTEDQLRAGEGM---IGLQAGTNKLA   49 (66)
Q Consensus        15 ~G~K~a~k-~~R~fteeql~~g~~i---i~LQ~GtNk~A   49 (66)
                      +||+.+++ ++|+||||||++|+.+   ||||||++...
T Consensus       144 ~~P~~~~~~~~r~Fteeql~~~~~~l~~~glqm~~f~~~  182 (190)
T 2rr8_A          144 LAPQIQDLYGKVDFTEEEINNMKTELEKYGIQMPAFSKI  182 (190)
T ss_dssp             CCCCCCCCTTSSCCCHHHHHHHHHHHHHSCCCCCCGGGC
T ss_pred             CCCCccccccCCCCCHHHHHHHHHHHHhhccCCCcchhH
Confidence            68888887 9999999999999999   99999998653

>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=97.82  E-value=4.4e-06  Score=54.47  Aligned_cols=28  Identities=21%  Similarity=0.190  Sum_probs=23.8

Q ss_pred             cccccCCCC-CCCccCccCCccccccCcHH
Q psy5619           2 DECYKHPEF-RGPFLGPKPSEENKRFFTED   30 (66)
Q Consensus         2 ~~~~~~~~~-~gp~~G~K~a~k~~R~ftee   30 (66)
                      +.|+++ ++ .||.||||+|++|+|+|||+
T Consensus       117 ~~a~~~-g~~~~p~~g~k~a~~~~r~f~e~  145 (146)
T 1wyn_A          117 GKAKTK-GLQSGVDIGVKYSEKQERSGPSS  145 (146)
T ss_dssp             HHHGGG-TSCCCSCCCCCCCCCCCCCSSCC
T ss_pred             HHHHhC-CCCCCCccceeccccCCCCCCCC
Confidence            456666 55 89999999999999999975

>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=97.10  E-value=0.00011  Score=50.13  Aligned_cols=32  Identities=19%  Similarity=0.225  Sum_probs=27.1

Q ss_pred             cCccCCcc-ccccCcHHHHhcccCeeeecccccccccccCCCC
Q psy5619          15 LGPKPSEE-NKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQNF   56 (66)
Q Consensus        15 ~G~K~a~k-~~R~fteeql~~g~~ii~LQ~GtNk~ASQ~Gmt~   56 (66)
                      ++|+..+. ++|+|+||+|++          +|+.++|+||++
T Consensus       165 ~~p~l~~l~~~~~Fseeql~~----------~n~~l~q~G~~~  197 (203)
T 1p5s_A          165 LAPPLIKSDENLSFTDEDVSI----------IVRRLRQSNVIL  197 (203)
T ss_dssp             SSCCCCCCCTTCCCCHHHHHH----------HHHHHHHCCCCC
T ss_pred             CCCchhhhcccCCCCHHHHHH----------HHHHHHHcCCCC
Confidence            46777764 889999999999          799999999973

>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=96.88  E-value=0.00023  Score=46.79  Aligned_cols=30  Identities=13%  Similarity=0.150  Sum_probs=24.5

Q ss_pred             cCccCCcc-ccccCcHHHHhcccCee---eeccc
Q psy5619          15 LGPKPSEE-NKRFFTEDQLRAGEGMI---GLQAG   44 (66)
Q Consensus        15 ~G~K~a~k-~~R~fteeql~~g~~ii---~LQ~G   44 (66)
                      +||+.++. ++|+||+|||++++..+   |+||.
T Consensus       121 ~~p~~~~~~~~~~fseeql~~~~~~l~~~g~~~~  154 (159)
T 1p2x_A          121 LAPPLIKSDENLSFTDEDVSIIVRRLRQSNVILP  154 (159)
T ss_dssp             SSCCCCCCCTTCCCCHHHHHHHHHHHHHCCCCCC
T ss_pred             CCCCchhhhccCCCCHHHHHHHHHHHHHcCCCCC
Confidence            57777755 89999999999999988   66643

>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}

Probab=95.07  E-value=0.0083  Score=39.08  Aligned_cols=23  Identities=30%  Similarity=0.352  Sum_probs=18.0

Q ss_pred             cccccCCCCCCCccC-----ccCCcccccc
Q psy5619           2 DECYKHPEFRGPFLG-----PKPSEENKRF   26 (66)
Q Consensus         2 ~~~~~~~~~~gp~~G-----~K~a~k~~R~   26 (66)
                      +.|+++ ++ ||.+|     ||+|++|+|+
T Consensus       126 ~~a~~~-~~-gp~~g~p~~~~k~a~~n~r~  153 (155)
T 1wym_A          126 GLAVAR-DD-GLFSGDPNWFPKKSKESGPS  153 (155)
T ss_dssp             HHHTTC-SS-SCCCSCSSSSCCCCCCCCSS
T ss_pred             HHHHHC-CC-CCcCCCCCCCCcccccCCCC
Confidence            456777 45 77776     9999999997

>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1

Probab=83.18  E-value=0.3  Score=31.19  Aligned_cols=21  Identities=19%  Similarity=0.226  Sum_probs=16.1

Q ss_pred             cccccCC--CCCC-CccCccCCcc
Q psy5619           2 DECYKHP--EFRG-PFLGPKPSEE   22 (66)
Q Consensus         2 ~~~~~~~--~~~g-p~~G~K~a~k   22 (66)
                      +.|++++  .|.| |.||||++..
T Consensus       119 ~~a~~~~~~~~~g~P~~~~k~~~~  142 (144)
T 1ujo_A          119 SLAVTKNDGNYRGDPNWFMKSGPS  142 (144)
T ss_dssp             HHHHHHCSSCCSSCSTTTCSSSCC
T ss_pred             HHHHHcCCCCcCCCCCCCcccCCC
Confidence            3455554  8999 9999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	66
d1p2xa_	159	a.40.1.1 (A:) Ras GTPase-activating-like protein r	0.003

>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 159

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Ras GTPase-activating-like protein rng2
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 31.5 bits (71), Expect = 0.003
 Identities = 3/27 (11%), Positives = 7/27 (25%)

Query: 10  FRGPFLGPKPSEENKRFFTEDQLRAGE 36
                  P    +    FT++ +    
Sbjct: 117 SMQDLAPPLIKSDENLSFTDEDVSIIV 143

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	66
d1p2xa_	159	Ras GTPase-activating-like protein rng2 {Fission y	88.48

>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Ras GTPase-activating-like protein rng2
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=88.48  E-value=0.062  Score=33.03  Aligned_cols=33  Identities=9%  Similarity=0.137  Sum_probs=24.5

Q ss_pred             cccccCCCCCCCccCccCCccccccCcHHHHhcccCee
Q psy5619           2 DECYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMI   39 (66)
Q Consensus         2 ~~~~~~~~~~gp~~G~K~a~k~~R~fteeql~~g~~ii   39 (66)
                      |.|+++ ++.+|.++    .++++.|++|+|++.+..+
T Consensus       114 ~~~~~~-~~~~p~~~----~~~k~~f~ee~L~~~~~~l  146 (159)
T d1p2xa_         114 YFLSMQ-DLAPPLIK----SDENLSFTDEDVSIIVRRL  146 (159)
T ss_dssp             HHHHTT-TSSCCCCC----CCTTCCCCHHHHHHHHHHH
T ss_pred             HHHHHc-CCCCCccC----ccccCCCCHHHHHHHHHHH
Confidence            456766 77766654    5678899999999877665