Psyllid ID: psy5620

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--
Protein Sequence
MTIFALGRTCYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQNFGATRKIILGK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHccccccccccccccccccccccHHHHHccccEEEEccccccccccccccccccEEEEccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHcccccccccccccccccccccccHHHHHccccEEEEEccccccccccccccccccEEEccc
Coil and Loop (DISEMBL)
mtifalgrtcykhpefrgpflgpkpseenkrfftEDQLRAGEGmiglqagtnklasqsgqnfgatrkiilgk
Flexible Loop (DISEMBL)
mtifalgrtcykhpefrgpflgpkpsEENKRFFTEDQLRAGEGMIGLQAGTnklasqsgqnfgatrkiilgk
Low Complexity Region (SEG)
MTIFALGRTCYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQNFGATRKIILGK
Disordered region (IsUnstruct)
**IFALGRTCYKHPEF********************************************************
Disordered Region (DISOPRED)
MTIFALGRTCYKHPEFRGPFLGPKPSE****************MIGLQAGTNKLASQS*QNFGATRKII***
Disordered Region (DISEMBL)
MTIFALGRTCYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQNFGATRKIILGK
Disordered Region (DISPRO)
MTIFALGRTCYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQNFGATRKIILG*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTIFALGRTCYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQNFGATRKIILGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	72	2.2.26 [Sep-21-2011]
P14318	184	Muscle-specific protein 2	yes	N/A	0.986	0.385	0.690	2e-23
Q24799	190	Myophilin OS=Echinococcus	N/A	N/A	0.944	0.357	0.602	1e-17
P19966	200	Transgelin OS=Gallus gall	yes	N/A	0.944	0.34	0.436	7e-07
Q5E9F5	199	Transgelin-2 OS=Bos tauru	yes	N/A	0.708	0.256	0.480	3e-06
Q9R1Q8	199	Transgelin-3 OS=Mus muscu	yes	N/A	0.944	0.341	0.402	5e-06
Q5R6R2	199	Transgelin-3 OS=Pongo abe	yes	N/A	0.944	0.341	0.402	6e-06
Q3ZBY2	199	Transgelin-3 OS=Bos tauru	no	N/A	0.944	0.341	0.402	6e-06
P37805	199	Transgelin-3 OS=Rattus no	yes	N/A	0.944	0.341	0.402	6e-06
Q4R5J4	199	Transgelin-3 OS=Macaca fa	N/A	N/A	0.944	0.341	0.402	6e-06
Q9UI15	199	Transgelin-3 OS=Homo sapi	yes	N/A	0.944	0.341	0.402	6e-06

>sp|P14318|MP20_DROME Muscle-specific protein 20 OS=Drosophila melanogaster GN=Mp20 PE=2 SV=2

 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/71 (69%), Positives = 62/71 (87%)

Query: 2   TIFALGRTCYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQN 61
           TIFALGR  YKH +F+GPFLGPKP++E KR FTE+QL+AG+ ++GLQAG+NK A+Q+GQN
Sbjct: 114 TIFALGRATYKHADFKGPFLGPKPADECKRDFTEEQLKAGQTIVGLQAGSNKGATQAGQN 173

Query: 62  FGATRKIILGK 72
            GA RKI+LGK
Sbjct: 174 LGAGRKILLGK 184

Drosophila melanogaster (taxid: 7227)

>sp|Q24799|MYPH_ECHGR Myophilin OS=Echinococcus granulosus PE=2 SV=1

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/68 (60%), Positives = 50/68 (73%)

Query: 2   TIFALGRTCYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQN 61
           T+FALGRTC  HPE+ GP LGPK + ENKR FTE QLR G+ ++ LQ G+NK ASQ+G N
Sbjct: 122 TLFALGRTCQTHPEYSGPVLGPKLATENKREFTEQQLREGQNVVSLQYGSNKGASQAGIN 181

Query: 62  FGATRKII 69
            G  R I+
Sbjct: 182 MGKQRMIM 189

Echinococcus granulosus (taxid: 6210)

>sp|P19966|TAGL_CHICK Transgelin OS=Gallus gallus GN=TAGLN PE=1 SV=3

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 2   TIFALGRTCYKHPE--FRG-PFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQS 58
           T+ ALG       +  + G P    K ++E+KR F+E QL+ G+ +IGLQ GTNK ASQ+
Sbjct: 129 TLVALGSLAVTKNDGHYHGDPNWFMKKAQEHKREFSESQLKEGKNIIGLQMGTNKGASQA 188

Query: 59  GQNFGATRKII 69
           G ++G  R+II
Sbjct: 189 GMSYGRPRQII 199

Actin cross-linking/gelling protein.

Gallus gallus (taxid: 9031)

>sp|Q5E9F5|TAGL2_BOVIN Transgelin-2 OS=Bos taurus GN=TAGLN2 PE=2 SV=3

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 38/52 (73%), Gaps = 1/52 (1%)

Query: 19  PFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQN-FGATRKII 69
           P   PK S+EN R+F+++QL+ G+ +IGLQ GTN+ ASQ+G   +G  R+I+
Sbjct: 148 PNWFPKKSKENPRYFSDNQLQEGKNVIGLQMGTNRGASQAGMTGYGMPRQIL 199

Bos taurus (taxid: 9913)

>sp|Q9R1Q8|TAGL3_MOUSE Transgelin-3 OS=Mus musculus GN=Tagln3 PE=1 SV=1

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 4/72 (5%)

Query: 2   TIFALGRTCYKHPE--FRG-PFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQS 58
           T+ ALG       +  +RG P    + +++N+R F+E+QLR G+ +IGLQ G+NK ASQ+
Sbjct: 128 TLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGSNKGASQA 187

Query: 59  GQN-FGATRKII 69
           G   +G  R+I+
Sbjct: 188 GMTGYGMPRQIM 199

Mus musculus (taxid: 10090)

>sp|Q5R6R2|TAGL3_PONAB Transgelin-3 OS=Pongo abelii GN=TAGLN3 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 4/72 (5%)

Query: 2   TIFALGRTCYKHPE--FRG-PFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQS 58
           T+ ALG       +  +RG P    + +++N+R F+E+QLR G+ +IGLQ G+NK ASQ+
Sbjct: 128 TLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGSNKGASQA 187

Query: 59  GQN-FGATRKII 69
           G   +G  R+I+
Sbjct: 188 GMTGYGMPRQIM 199

Pongo abelii (taxid: 9601)

>sp|Q3ZBY2|TAGL3_BOVIN Transgelin-3 OS=Bos taurus GN=TAGLN3 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 4/72 (5%)

Query: 2   TIFALGRTCYKHPE--FRG-PFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQS 58
           T+ ALG       +  +RG P    + +++N+R F+E+QLR G+ +IGLQ G+NK ASQ+
Sbjct: 128 TLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGSNKGASQA 187

Query: 59  GQN-FGATRKII 69
           G   +G  R+I+
Sbjct: 188 GMTGYGMPRQIM 199

Bos taurus (taxid: 9913)

>sp|P37805|TAGL3_RAT Transgelin-3 OS=Rattus norvegicus GN=Tagln3 PE=1 SV=2

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 4/72 (5%)

Query: 2   TIFALGRTCYKHPE--FRG-PFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQS 58
           T+ ALG       +  +RG P    + +++N+R F+E+QLR G+ +IGLQ G+NK ASQ+
Sbjct: 128 TLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGSNKGASQA 187

Query: 59  GQN-FGATRKII 69
           G   +G  R+I+
Sbjct: 188 GMTGYGMPRQIM 199

Rattus norvegicus (taxid: 10116)

>sp|Q4R5J4|TAGL3_MACFA Transgelin-3 OS=Macaca fascicularis GN=TAGLN3 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 4/72 (5%)

Query: 2   TIFALGRTCYKHPE--FRG-PFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQS 58
           T+ ALG       +  +RG P    + +++N+R F+E+QLR G+ +IGLQ G+NK ASQ+
Sbjct: 128 TLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGSNKGASQA 187

Query: 59  GQN-FGATRKII 69
           G   +G  R+I+
Sbjct: 188 GMTGYGMPRQIM 199

Macaca fascicularis (taxid: 9541)

>sp|Q9UI15|TAGL3_HUMAN Transgelin-3 OS=Homo sapiens GN=TAGLN3 PE=1 SV=2

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 4/72 (5%)

Query: 2   TIFALGRTCYKHPE--FRG-PFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQS 58
           T+ ALG       +  +RG P    + +++N+R F+E+QLR G+ +IGLQ G+NK ASQ+
Sbjct: 128 TLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGSNKGASQA 187

Query: 59  GQN-FGATRKII 69
           G   +G  R+I+
Sbjct: 188 GMTGYGMPRQIM 199

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
383866289	1543	PREDICTED: LOW QUALITY PROTEIN: mitogen-	0.986	0.046	0.816	3e-29
307168035	1419	Mitogen-activated protein kinase kinase	0.972	0.049	0.828	7e-29
380024140	1525	PREDICTED: mitogen-activated protein kin	0.972	0.045	0.814	2e-28
328783588	1501	PREDICTED: mitogen-activated protein kin	0.972	0.046	0.814	3e-28
114051920	182	muscular protein 20 [Bombyx mori] gi|951	0.986	0.390	0.845	5e-28
242012525	182	Muscle-specific protein, putative [Pedic	1.0	0.395	0.833	5e-28
307208770	203	Muscle-specific protein 20 [Harpegnathos	0.986	0.349	0.830	6e-28
340726457	1549	PREDICTED: mitogen-activated protein kin	0.972	0.045	0.8	7e-28
350397243	1514	PREDICTED: LOW QUALITY PROTEIN: mitogen-	0.972	0.046	0.8	1e-27
357605644	130	muscular protein 20 [Danaus plexippus]	0.986	0.546	0.816	2e-27

>gi|383866289|ref|XP_003708603.1| PREDICTED: LOW QUALITY PROTEIN: mitogen-activated protein kinase kinase kinase 15-like [Megachile rotundata]

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 58/71 (81%), Positives = 68/71 (95%)

Query: 2   TIFALGRTCYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQN 61
           TIFA+GRT Y+HPE+RGP+LGPKP+EENKR FTE+QLRAGEG+IGLQAGTNK A+Q+GQN
Sbjct: 188 TIFAIGRTTYRHPEWRGPWLGPKPAEENKRHFTEEQLRAGEGLIGLQAGTNKGATQAGQN 247

Query: 62  FGATRKIILGK 72
           FGATRKI+LGK
Sbjct: 248 FGATRKILLGK 258

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307168035|gb|EFN61359.1| Mitogen-activated protein kinase kinase kinase 15 [Camponotus floridanus]

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 58/70 (82%), Positives = 67/70 (95%)

Query: 2   TIFALGRTCYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQN 61
           TIFA+GRT YKHPE+RGP+LGPKP+EENKR FTE+QLRAGEG+IGLQAGTNK A+Q+GQN
Sbjct: 76  TIFAIGRTTYKHPEWRGPWLGPKPAEENKRSFTEEQLRAGEGLIGLQAGTNKGATQAGQN 135

Query: 62  FGATRKIILG 71
           FGATRKI+LG
Sbjct: 136 FGATRKILLG 145

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380024140|ref|XP_003695864.1| PREDICTED: mitogen-activated protein kinase kinase kinase 15-like [Apis florea]

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/70 (81%), Positives = 66/70 (94%)

Query: 2   TIFALGRTCYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQN 61
           TIFA+GRT YKHPE+RGP+LGP+P+EENKR FTE+QLRAGEG IGLQAGTNK A+Q+GQN
Sbjct: 177 TIFAIGRTTYKHPEWRGPWLGPRPAEENKRHFTEEQLRAGEGYIGLQAGTNKGATQAGQN 236

Query: 62  FGATRKIILG 71
           FGATRKI+LG
Sbjct: 237 FGATRKILLG 246

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783588|ref|XP_003250315.1| PREDICTED: mitogen-activated protein kinase kinase kinase 15-like [Apis mellifera]

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 57/70 (81%), Positives = 66/70 (94%)

Query: 2   TIFALGRTCYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQN 61
           TIFA+GRT YKHPE+RGP+LGP+P+EENKR FTE+QLRAGEG IGLQAGTNK A+Q+GQN
Sbjct: 152 TIFAIGRTTYKHPEWRGPWLGPRPAEENKRHFTEEQLRAGEGYIGLQAGTNKGATQAGQN 211

Query: 62  FGATRKIILG 71
           FGATRKI+LG
Sbjct: 212 FGATRKILLG 221

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114051920|ref|NP_001040437.1| muscular protein 20 [Bombyx mori] gi|95102890|gb|ABF51386.1| muscular protein 20 [Bombyx mori]

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 60/71 (84%), Positives = 66/71 (92%)

Query: 2   TIFALGRTCYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQN 61
           TIFA+GRT YKHPE+RGPFLGPKP+EENKR F+ED LRAGE +IGLQAGTNK ASQSGQN
Sbjct: 112 TIFAIGRTAYKHPEWRGPFLGPKPAEENKRAFSEDVLRAGESVIGLQAGTNKWASQSGQN 171

Query: 62  FGATRKIILGK 72
           FGA+RKIILGK
Sbjct: 172 FGASRKIILGK 182

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242012525|ref|XP_002426983.1| Muscle-specific protein, putative [Pediculus humanus corporis] gi|212511212|gb|EEB14245.1| Muscle-specific protein, putative [Pediculus humanus corporis]

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 60/72 (83%), Positives = 68/72 (94%)

Query: 1   MTIFALGRTCYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQ 60
           MTIFALGRT YKHPE+RGPFLGP+PSEENKR F+E+QLRAGE +IGLQAGTN+ A+QSGQ
Sbjct: 111 MTIFALGRTAYKHPEWRGPFLGPRPSEENKRDFSEEQLRAGEAIIGLQAGTNRGANQSGQ 170

Query: 61  NFGATRKIILGK 72
           NFGATRKI+LGK
Sbjct: 171 NFGATRKILLGK 182

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307208770|gb|EFN86047.1| Muscle-specific protein 20 [Harpegnathos saltator]

 Score =  127 bits (320), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 68/71 (95%)

Query: 2   TIFALGRTCYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQN 61
           TIFA+GRT YKHPE+RGP+LGPKP+EENKR FTE+QLRAGEG+IGLQAGTNK A+Q+GQN
Sbjct: 133 TIFAIGRTTYKHPEWRGPWLGPKPAEENKRAFTEEQLRAGEGLIGLQAGTNKGATQAGQN 192

Query: 62  FGATRKIILGK 72
           FGATRKI+LGK
Sbjct: 193 FGATRKILLGK 203

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340726457|ref|XP_003401574.1| PREDICTED: mitogen-activated protein kinase kinase kinase 15-like [Bombus terrestris]

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 56/70 (80%), Positives = 66/70 (94%)

Query: 2   TIFALGRTCYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQN 61
           TIFA+GRT Y+HPE+RGP+LGP+P+EENKR FTE+QLRAGEG IGLQAGTNK A+Q+GQN
Sbjct: 189 TIFAIGRTTYRHPEWRGPWLGPRPAEENKRNFTEEQLRAGEGYIGLQAGTNKGATQAGQN 248

Query: 62  FGATRKIILG 71
           FGATRKI+LG
Sbjct: 249 FGATRKILLG 258

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350397243|ref|XP_003484818.1| PREDICTED: LOW QUALITY PROTEIN: mitogen-activated protein kinase kinase kinase 15-like [Bombus impatiens]

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/70 (80%), Positives = 66/70 (94%)

Query: 2   TIFALGRTCYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQN 61
           TIFA+GRT Y+HPE+RGP+LGP+P+EENKR FTE+QLRAGEG IGLQAGTNK A+Q+GQN
Sbjct: 154 TIFAIGRTTYRHPEWRGPWLGPRPAEENKRNFTEEQLRAGEGYIGLQAGTNKGATQAGQN 213

Query: 62  FGATRKIILG 71
           FGATRKI+LG
Sbjct: 214 FGATRKILLG 223

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357605644|gb|EHJ64717.1| muscular protein 20 [Danaus plexippus]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/71 (81%), Positives = 67/71 (94%)

Query: 2   TIFALGRTCYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQN 61
           TIFA+GRT +KHPE+RGP+LGPKP+EEN+R F+ED LRAGE +IGLQAGTNKLASQSGQN
Sbjct: 60  TIFAIGRTTHKHPEWRGPWLGPKPAEENRREFSEDVLRAGESVIGLQAGTNKLASQSGQN 119

Query: 62  FGATRKIILGK 72
           FGA+RKIILGK
Sbjct: 120 FGASRKIILGK 130

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
FB|FBgn0002789	184	Mp20 "Muscle protein 20" [Dros	0.986	0.385	0.690	6.1e-23
FB|FBgn0038774	169	CG5023 [Drosophila melanogaste	0.916	0.390	0.552	1.8e-14
FB|FBgn0035499	188	Chd64 "Chd64" [Drosophila mela	0.819	0.313	0.516	2.5e-10
ZFIN|ZDB-GENE-020802-2	201	tagln2 "transgelin 2" [Danio r	0.958	0.343	0.438	6.6e-10
UNIPROTKB|P19966	200	TAGLN "Transgelin" [Gallus gal	0.944	0.34	0.436	1.6e-08
UNIPROTKB|E1C7W7	199	TAGLN3 "Uncharacterized protei	0.944	0.341	0.416	4.2e-08
UNIPROTKB|Q5E9F5	199	TAGLN2 "Transgelin-2" [Bos tau	0.75	0.271	0.482	4.2e-08
UNIPROTKB|Q3ZBY2	199	TAGLN3 "Transgelin-3" [Bos tau	0.944	0.341	0.402	6.8e-08
UNIPROTKB|E2RE61	199	TAGLN3 "Uncharacterized protei	0.944	0.341	0.402	6.8e-08
UNIPROTKB|C9J5W6	115	TAGLN3 "Transgelin-3" [Homo sa	0.944	0.591	0.402	6.8e-08

FB|FBgn0002789 Mp20 "Muscle protein 20" [Drosophila melanogaster (taxid:7227)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 49/71 (69%), Positives = 62/71 (87%)

Query:     2 TIFALGRTCYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQN 61
             TIFALGR  YKH +F+GPFLGPKP++E KR FTE+QL+AG+ ++GLQAG+NK A+Q+GQN
Sbjct:   114 TIFALGRATYKHADFKGPFLGPKPADECKRDFTEEQLKAGQTIVGLQAGSNKGATQAGQN 173

Query:    62 FGATRKIILGK 72
              GA RKI+LGK
Sbjct:   174 LGAGRKILLGK 184

GO:0005509 "calcium ion binding" evidence=ISS

GO:0043292 "contractile fiber" evidence=NAS

GO:0003779 "actin binding" evidence=ISS

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0007155 "cell adhesion" evidence=IMP

GO:0007520 "myoblast fusion" evidence=IMP

FB|FBgn0038774 CG5023 [Drosophila melanogaster (taxid:7227)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 37/67 (55%), Positives = 49/67 (73%)

Query:     1 MTIFALGRTCYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQ 60
             ++++ALGR   KHPE+ GP LGPK +++N+R FTE+QLRA EG + LQ G NK ASQ+G 
Sbjct:   101 LSLYALGRITQKHPEYTGPTLGPKMADKNERSFTEEQLRAHEGELNLQMGFNKGASQAGH 160

Query:    61 N-FGATR 66
                G TR
Sbjct:   161 GGMGNTR 167

GO:0003779 "actin binding" evidence=ISS

GO:0031032 "actomyosin structure organization" evidence=IEA

FB|FBgn0035499 Chd64 "Chd64" [Drosophila melanogaster (taxid:7227)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 32/62 (51%), Positives = 43/62 (69%)

Query:     5 ALGRTCYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQNFGA 64
             +LGR   K   F  P +GPK +++N R F+++QLRAG  +I LQ G+NK A+QSG NFG 
Sbjct:   128 SLGR---KASNFNKPSIGPKEADKNVRNFSDEQLRAGANVISLQYGSNKGATQSGINFGN 184

Query:    65 TR 66
             TR
Sbjct:   185 TR 186

GO:0005865 "striated muscle thin filament" evidence=ISS

GO:0006939 "smooth muscle contraction" evidence=ISS

GO:0003779 "actin binding" evidence=ISS

GO:0035626 "juvenile hormone mediated signaling pathway" evidence=IMP

GO:0070594 "juvenile hormone response element binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-020802-2 tagln2 "transgelin 2" [Danio rerio (taxid:7955)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 32/73 (43%), Positives = 48/73 (65%)

Query:     1 MTIFALGRTCYKHPE--FRG-PFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQ 57
             MT+ +LG       +  +RG P   PK S+EN+R F+E+Q++ G+ +IGLQ GTNK ASQ
Sbjct:   126 MTLLSLGSLAVTKDDGCYRGDPAWFPKKSQENRREFSEEQMKEGQSVIGLQMGTNKGASQ 185

Query:    58 SGQN-FGATRKII 69
             +G   +G  R+I+
Sbjct:   186 AGMTGYGRPRQIL 198

GO:0007517 "muscle organ development" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IMP

GO:0003779 "actin binding" evidence=ISS

GO:0015629 "actin cytoskeleton" evidence=IMP

GO:0000902 "cell morphogenesis" evidence=IMP

UNIPROTKB|P19966 TAGLN "Transgelin" [Gallus gallus (taxid:9031)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 31/71 (43%), Positives = 45/71 (63%)

Query:     2 TIFALGRTCYKHPE--FRG-PFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQS 58
             T+ ALG       +  + G P    K ++E+KR F+E QL+ G+ +IGLQ GTNK ASQ+
Sbjct:   129 TLVALGSLAVTKNDGHYHGDPNWFMKKAQEHKREFSESQLKEGKNIIGLQMGTNKGASQA 188

Query:    59 GQNFGATRKII 69
             G ++G  R+II
Sbjct:   189 GMSYGRPRQII 199

GO:0007517 "muscle organ development" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|E1C7W7 TAGLN3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 30/72 (41%), Positives = 46/72 (63%)

Query:     2 TIFALGRTCYKHPE--FRG-PFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQS 58
             T+ ALG       +  ++G P    + +++N+R F+E+QLR G+ +IGLQ G+NK ASQS
Sbjct:   128 TLMALGSLAVTKDDGCYKGDPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGSNKGASQS 187

Query:    59 GQN-FGATRKII 69
             G   +G  R+II
Sbjct:   188 GMTGYGMPRQII 199

GO:0007517 "muscle organ development" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q5E9F5 TAGLN2 "Transgelin-2" [Bos taurus (taxid:9913)]

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 27/56 (48%), Positives = 40/56 (71%)

Query:    16 FRG-PFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQN-FGATRKII 69
             F G P   PK S+EN R+F+++QL+ G+ +IGLQ GTN+ ASQ+G   +G  R+I+
Sbjct:   144 FSGDPNWFPKKSKENPRYFSDNQLQEGKNVIGLQMGTNRGASQAGMTGYGMPRQIL 199

GO:0031965 "nuclear membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007517 "muscle organ development" evidence=IEA

UNIPROTKB|Q3ZBY2 TAGLN3 "Transgelin-3" [Bos taurus (taxid:9913)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 29/72 (40%), Positives = 46/72 (63%)

Query:     2 TIFALGRTCYKHPE--FRG-PFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQS 58
             T+ ALG       +  +RG P    + +++N+R F+E+QLR G+ +IGLQ G+NK ASQ+
Sbjct:   128 TLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGSNKGASQA 187

Query:    59 GQN-FGATRKII 69
             G   +G  R+I+
Sbjct:   188 GMTGYGMPRQIM 199

GO:0005634 "nucleus" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0007517 "muscle organ development" evidence=IEA

UNIPROTKB|E2RE61 TAGLN3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 29/72 (40%), Positives = 46/72 (63%)

Query:     2 TIFALGRTCYKHPE--FRG-PFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQS 58
             T+ ALG       +  +RG P    + +++N+R F+E+QLR G+ +IGLQ G+NK ASQ+
Sbjct:   128 TLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGSNKGASQA 187

Query:    59 GQN-FGATRKII 69
             G   +G  R+I+
Sbjct:   188 GMTGYGMPRQIM 199

GO:0005634 "nucleus" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0007517 "muscle organ development" evidence=IEA

UNIPROTKB|C9J5W6 TAGLN3 "Transgelin-3" [Homo sapiens (taxid:9606)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 29/72 (40%), Positives = 46/72 (63%)

Query:     2 TIFALGRTCYKHPE--FRG-PFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQS 58
             T+ ALG       +  +RG P    + +++N+R F+E+QLR G+ +IGLQ G+NK ASQ+
Sbjct:    44 TLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGSNKGASQA 103

Query:    59 GQN-FGATRKII 69
             G   +G  R+I+
Sbjct:   104 GMTGYGMPRQIM 115

GO:0007517 "muscle organ development" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P14318	MP20_DROME	No assigned EC number	0.6901	0.9861	0.3858	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	72
COG5199	178	COG5199, SCP1, Calponin [Cytoskeleton]	6e-08
pfam00402	26	pfam00402, Calponin, Calponin family repeat	0.002

>gnl|CDD|227526 COG5199, SCP1, Calponin [Cytoskeleton]

 Score = 46.5 bits (110), Expect = 6e-08
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 2   TIFALGRTCYKHPEFRGPFLGPKPSEENKRFFT-EDQLRAGEGMIGLQAGTNKLASQSGQ 60
            +++L R   K   F GPFLGP  + +  R F+ ++ L   +G I LQ G + L+ QS +
Sbjct: 108 CLYSLSRYAQKERMFSGPFLGPHLATKKPRVFSSQEVLDRSKGAIHLQYGYSDLSEQSTE 167

Length = 178

>gnl|CDD|109460 pfam00402, Calponin, Calponin family repeat

 Score = 32.0 bits (73), Expect = 0.002
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 45 IGLQAGTNKLASQSGQN-FGATRKII 69
          + LQ GTNK ASQ G   +G  R+I 
Sbjct: 1  LSLQMGTNKGASQKGMTAYGLPRQIY 26

Length = 26

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	72
KOG2046|consensus	193		99.93
PF00402	26	Calponin: Calponin family repeat; InterPro: IPR000	99.74
COG5199	178	SCP1 Calponin [Cytoskeleton]	99.3

>KOG2046|consensus

Probab=99.93  E-value=1.6e-26  Score=159.75  Aligned_cols=71  Identities=46%  Similarity=0.718  Sum_probs=67.6

Q ss_pred             ChhhhHhHHHhhCCCCCCCccCccCCccccCcccHHHHhcccCeeeeccccccccccCCCC-CCCccccccC
Q psy5620           1 MTIFALGRTCYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQN-FGATRKIILG   71 (72)
Q Consensus         1 ~tL~aLg~~a~~~~~~~gp~~g~K~a~kn~R~fteeqlk~g~~~i~lq~Gtnk~asQ~gm~-~g~~r~~~~~   71 (72)
                      .||+||+++|+++..+.+|.||||+|++++|+|+++++++|+++|+|||||||||||+||+ ||++||+++-
T Consensus       120 vtL~aLa~~a~~~~~~~~~~~g~k~a~kq~r~f~~~~lk~g~~vi~LQmGtnk~asq~g~~~~G~~R~l~dp  191 (193)
T KOG2046|consen  120 VTLLALARKAQKKGLFSGPGIGPKLAEKQPREFTDEQLKAGQNVIGLQMGTNKGASQAGMTAYGTRRHLYDP  191 (193)
T ss_pred             HHHHHHHHHHhhccccCCCCcCCchhhcCcccCCHHHHhcccceEEEeeeccchhhcccccccccccccCCC
Confidence            3899999999999877899999999999999999999999999999999999999999999 9999988764

>PF00402 Calponin: Calponin family repeat; InterPro: IPR000557 Calponin [, ] is a thin filament-associated protein that is implicated in the regulation and modulation of smooth muscle contraction

Probab=99.74  E-value=5.5e-19  Score=87.90  Aligned_cols=25  Identities=68%  Similarity=0.890  Sum_probs=23.9

Q ss_pred             eeeccccccccccCCCC-CCCccccc
Q psy5620          45 IGLQAGTNKLASQSGQN-FGATRKII   69 (72)
Q Consensus        45 i~lq~Gtnk~asQ~gm~-~g~~r~~~   69 (72)
                      |+|||||||||||+||+ ||++|||+
T Consensus         1 i~LQ~GtNk~aSQ~Gmt~~G~~R~i~   26 (26)
T PF00402_consen    1 IGLQMGTNKGASQSGMTAFGTPRHIY   26 (26)
T ss_pred             CcccccccccccccCCccCCCCcccC
Confidence            79999999999999998 99999985

It is capable of binding to actin, calmodulin, troponin C and tropomyosin. The interaction of calponin with actin inhibits the actomyosin MgATPase activity. Calponin is a basic protein of approximately 34 Kd. Multiple isoforms are found in smooth muscles. Calponin contains three repeats of a well conserved 26 amino acid domain. Such a domain is also found in vertebrate smooth muscle protein (SM22 or transgelin), and a number of other proteins whose physiological role is not yet established, including Drosophila synchronous flight muscle protein SM20, Caenorhabditis elegans unc-87 protein [], rat neuronal protein NP25 [], and an Onchocerca volvulus antigen [].

>COG5199 SCP1 Calponin [Cytoskeleton]

Probab=99.30  E-value=3.2e-12  Score=86.84  Aligned_cols=68  Identities=32%  Similarity=0.597  Sum_probs=62.9

Q ss_pred             ChhhhHhHHHhhCCCCCCCccCccCCccccCcc-cHHHHhcccCeeeeccccccccccCCCC--CCCcccc
Q psy5620           1 MTIFALGRTCYKHPEFRGPFLGPKPSEENKRFF-TEDQLRAGEGMIGLQAGTNKLASQSGQN--FGATRKI   68 (72)
Q Consensus         1 ~tL~aLg~~a~~~~~~~gp~~g~K~a~kn~R~f-teeqlk~g~~~i~lq~Gtnk~asQ~gm~--~g~~r~~   68 (72)
                      .||++|+|.|++.-.+.+|.|||+.|+|.+|.| ..+++..+++.+.||||+-+.++|++=.  ++.+|++
T Consensus       107 ~~l~slSRya~K~~~~~~p~lGP~LatKkprvfS~q~~l~~~~g~~~lqyGy~d~~~q~tek~a~~~rrD~  177 (178)
T COG5199         107 ICLYSLSRYAQKERMFSGPFLGPHLATKKPRVFSSQEVLDRSKGAIHLQYGYSDLSEQSTEKGASNVRRDL  177 (178)
T ss_pred             HHHHHHHHHHHHhcCCCCCccCccccccCCcccccHHHHhhcccceEeeecccccchhcccccccceecCC
Confidence            489999999999767899999999999999999 8999999999999999999999999864  8888875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	72
1wyn_A	146	Calponin-2; CH domain, F-actin binding, all alpha	4e-10
2rr8_A	190	Iqgap1 protein; F-actin binding protein, protein b	9e-07
3i6x_A	193	P195, RAS GTPase-activating-like protein iqgap1; a	1e-06
1p2x_A	159	RNG2 protein, RAS GTPase-activating-like protein;	1e-05
1p5s_A	203	RAS GTPase-activating-like protein RNG2; alpha-hel	6e-05
1wym_A	155	Transgelin-2; CH domain, F-actin binding, all heli	6e-04

>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 146

 Score = 51.0 bits (122), Expect = 4e-10
 Identities = 8/34 (23%), Positives = 13/34 (38%)

Query: 2   TIFALGRTCYKHPEFRGPFLGPKPSEENKRFFTE 35
           ++ AL           G  +G K SE+ +R    
Sbjct: 111 SLLALAGKAKTKGLQSGVDIGVKYSEKQERSGPS 144

>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens} Length = 190

 Score = 42.6 bits (100), Expect = 9e-07
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 10/51 (19%)

Query: 2   TIFALGRTCYKHPEFRGPFLGPKPSE-ENKRFFTEDQLRAGEGMI---GLQ 48
            I AL    +K        L P+  +   K  FTE+++   +  +   G+Q
Sbjct: 131 CIHALSLYLFKLG------LAPQIQDLYGKVDFTEEEINNMKTELEKYGIQ 175

>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens} Length = 193

 Score = 42.3 bits (99), Expect = 1e-06
 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 7/45 (15%)

Query: 2   TIFALGRTCYKHPEFRGPFLGPKPSE-ENKRFFTEDQLRAGEGMI 45
            I AL    +K        L P+  +   K  FTE+++   +  +
Sbjct: 153 CIHALSLYLFKLG------LAPQIQDLYGKVDFTEEEINNMKTEL 191

>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 159

 Score = 39.8 bits (93), Expect = 1e-05
 Identities = 6/44 (13%), Positives = 11/44 (25%), Gaps = 5/44 (11%)

Query: 2   TIFALGRTCYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMI 45
            I AL                P    +    FT++ +      +
Sbjct: 108 CIHALSYFLSMQD-----LAPPLIKSDENLSFTDEDVSIIVRRL 146

>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 203

 Score = 37.6 bits (87), Expect = 6e-05
 Identities = 6/41 (14%), Positives = 10/41 (24%), Gaps = 5/41 (12%)

Query: 2   TIFALGRTCYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGE 42
            I AL                P    +    FT++ +    
Sbjct: 152 CIHALSYFLSMQD-----LAPPLIKSDENLSFTDEDVSIIV 187

>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} Length = 155

 Score = 35.0 bits (80), Expect = 6e-04
 Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 3/31 (9%)

Query: 2   TIFALGRTCYKHPE--FRG-PFLGPKPSEEN 29
           T+  LG       +  F G P   PK S+E+
Sbjct: 120 TLMNLGGLAVARDDGLFSGDPNWFPKKSKES 150

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	72
2rr8_A	190	Iqgap1 protein; F-actin binding protein, protein b	99.18
1wyn_A	146	Calponin-2; CH domain, F-actin binding, all alpha	98.97
1p5s_A	203	RAS GTPase-activating-like protein RNG2; alpha-hel	98.47
1p2x_A	159	RNG2 protein, RAS GTPase-activating-like protein;	98.38
1wym_A	155	Transgelin-2; CH domain, F-actin binding, all heli	97.99
1wyp_A	136	Calponin 1; CH domain, F-actin binding, all-alpha,	97.58
1ujo_A	144	Transgelin; CH domain, actin binding, structural g	97.37
3i6x_A	193	P195, RAS GTPase-activating-like protein iqgap1; a	96.5

>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens}

Probab=99.18  E-value=9e-12  Score=84.47  Aligned_cols=49  Identities=24%  Similarity=0.247  Sum_probs=43.7

Q ss_pred             ChhhhHhHHHhhCCCCCCCccCccCCcc-ccCcccHHHHhcccCe---eeecccccccc
Q psy5620           1 MTIFALGRTCYKHPEFRGPFLGPKPSEE-NKRFFTEDQLRAGEGM---IGLQAGTNKLA   55 (72)
Q Consensus         1 ~tL~aLg~~a~~~~~~~gp~~g~K~a~k-n~R~fteeqlk~g~~~---i~lq~Gtnk~a   55 (72)
                      .||+||++.|++++      +||+.+++ ++|+|+||+|++++.+   ||||||++...
T Consensus       130 ~cL~aL~~~a~~~g------~~P~~~~~~~~r~Fteeql~~~~~~l~~~glqm~~f~~~  182 (190)
T 2rr8_A          130 YCIHALSLYLFKLG------LAPQIQDLYGKVDFTEEEINNMKTELEKYGIQMPAFSKI  182 (190)
T ss_dssp             HHHHHHHHHHHHSS------CCCCCCCCTTSSCCCHHHHHHHHHHHHHSCCCCCCGGGC
T ss_pred             HHHHHHHHHHHHCC------CCCCccccccCCCCCHHHHHHHHHHHHhhccCCCcchhH
Confidence            39999999999985      57888887 9999999999999999   99999988653

>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=98.97  E-value=2.2e-10  Score=74.89  Aligned_cols=36  Identities=22%  Similarity=0.189  Sum_probs=33.2

Q ss_pred             ChhhhHhHHHhhCCCCCCCccCccCCccccCcccHH
Q psy5620           1 MTIFALGRTCYKHPEFRGPFLGPKPSEENKRFFTED   36 (72)
Q Consensus         1 ~tL~aLg~~a~~~~~~~gp~~g~K~a~kn~R~ftee   36 (72)
                      .||+||++.|++++.+.||.||||+|++|+|+|||+
T Consensus       110 ~cL~aL~~~a~~~g~~~~p~~g~k~a~~~~r~f~e~  145 (146)
T 1wyn_A          110 VSLLALAGKAKTKGLQSGVDIGVKYSEKQERSGPSS  145 (146)
T ss_dssp             HHHHHHHHHHGGGTSCCCSCCCCCCCCCCCCCSSCC
T ss_pred             HHHHHHHHHHHhCCCCCCCccceeccccCCCCCCCC
Confidence            389999999999976689999999999999999985

>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=98.47  E-value=6.6e-08  Score=66.14  Aligned_cols=44  Identities=20%  Similarity=0.163  Sum_probs=38.0

Q ss_pred             hhhhHhHHHhhCCCCCCCccCccCCcc-ccCcccHHHHhcccCeeeeccccccccccCCCC
Q psy5620           2 TIFALGRTCYKHPEFRGPFLGPKPSEE-NKRFFTEDQLRAGEGMIGLQAGTNKLASQSGQN   61 (72)
Q Consensus         2 tL~aLg~~a~~~~~~~gp~~g~K~a~k-n~R~fteeqlk~g~~~i~lq~Gtnk~asQ~gm~   61 (72)
                      ||+||++.+++++      ++|+..+. ++|+|+||+|++          +|+.++|+||+
T Consensus       152 ~L~aL~~~a~~~g------~~p~l~~l~~~~~Fseeql~~----------~n~~l~q~G~~  196 (203)
T 1p5s_A          152 CIHALSYFLSMQD------LAPPLIKSDENLSFTDEDVSI----------IVRRLRQSNVI  196 (203)
T ss_dssp             HHHHHHHHHHHTT------SSCCCCCCCTTCCCCHHHHHH----------HHHHHHHCCCC
T ss_pred             HHHHHHHHHhhcC------CCCchhhhcccCCCCHHHHHH----------HHHHHHHcCCC
Confidence            8999999999885      35666664 889999999999          79999999976

>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=98.38  E-value=1.4e-07  Score=62.20  Aligned_cols=42  Identities=17%  Similarity=0.135  Sum_probs=35.5

Q ss_pred             hhhhHhHHHhhCCCCCCCccCccCCcc-ccCcccHHHHhcccCee---eecc
Q psy5620           2 TIFALGRTCYKHPEFRGPFLGPKPSEE-NKRFFTEDQLRAGEGMI---GLQA   49 (72)
Q Consensus         2 tL~aLg~~a~~~~~~~gp~~g~K~a~k-n~R~fteeqlk~g~~~i---~lq~   49 (72)
                      ||+||++.+.+++      +||+.++. ++|+|++|||++++..+   |+||
T Consensus       108 ~L~aL~~~~~~~g------~~p~~~~~~~~~~fseeql~~~~~~l~~~g~~~  153 (159)
T 1p2x_A          108 CIHALSYFLSMQD------LAPPLIKSDENLSFTDEDVSIIVRRLRQSNVIL  153 (159)
T ss_dssp             HHHHHHHHHHTTT------SSCCCCCCCTTCCCCHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHhhCC------CCCCchhhhccCCCCHHHHHHHHHHHHHcCCCC
Confidence            8999999998875      46777655 89999999999999888   6665

>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}

Probab=97.99  E-value=3.5e-06  Score=55.24  Aligned_cols=30  Identities=33%  Similarity=0.489  Sum_probs=25.7

Q ss_pred             ChhhhHhHHHhhCCCCCCCccC-----ccCCccccCc
Q psy5620           1 MTIFALGRTCYKHPEFRGPFLG-----PKPSEENKRF   32 (72)
Q Consensus         1 ~tL~aLg~~a~~~~~~~gp~~g-----~K~a~kn~R~   32 (72)
                      .||+||++.|++++.  ||.+|     ||+|++|+|+
T Consensus       119 ~cL~aL~~~a~~~~~--gp~~g~p~~~~k~a~~n~r~  153 (155)
T 1wym_A          119 RTLMNLGGLAVARDD--GLFSGDPNWFPKKSKESGPS  153 (155)
T ss_dssp             HHHHHHHHHHTTCSS--SCCCSCSSSSCCCCCCCCSS
T ss_pred             HHHHHHHHHHHHCCC--CCcCCCCCCCCcccccCCCC
Confidence            389999999999863  66666     9999999997

>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=97.58  E-value=2.8e-05  Score=49.88  Aligned_cols=26  Identities=15%  Similarity=0.127  Sum_probs=23.9

Q ss_pred             ChhhhHhHHHhhCCCCCCCccCccCCcc
Q psy5620           1 MTIFALGRTCYKHPEFRGPFLGPKPSEE   28 (72)
Q Consensus         1 ~tL~aLg~~a~~~~~~~gp~~g~K~a~k   28 (72)
                      .||+||++.|++++  .||.||||+|++
T Consensus       110 ~cL~aL~~~a~~~g--~~p~~g~k~a~~  135 (136)
T 1wyp_A          110 STLLALASMAKTKG--NKVNVGVSGPSS  135 (136)
T ss_dssp             HHHHHHHHHHHHHT--CCCCCCCCSCCC
T ss_pred             HHHHHHHHHHHHCC--CCCcCccccccc
Confidence            38999999999987  799999999986

>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1

Probab=97.37  E-value=9.1e-05  Score=47.89  Aligned_cols=28  Identities=29%  Similarity=0.395  Sum_probs=24.9

Q ss_pred             ChhhhHhHHHhhCC--CCCC-CccCccCCcc
Q psy5620           1 MTIFALGRTCYKHP--EFRG-PFLGPKPSEE   28 (72)
Q Consensus         1 ~tL~aLg~~a~~~~--~~~g-p~~g~K~a~k   28 (72)
                      .||+||++.|.+++  .|.| |.||||++..
T Consensus       112 ~cL~aL~~~a~~~~~~~~~g~P~~~~k~~~~  142 (144)
T 1ujo_A          112 RTLMALGSLAVTKNDGNYRGDPNWFMKSGPS  142 (144)
T ss_dssp             HHHHHHHHHHHHHCSSCCSSCSTTTCSSSCC
T ss_pred             HHHHHHHHHHHHcCCCCcCCCCCCCcccCCC
Confidence            38999999999876  7999 9999999875

>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}

Probab=96.50  E-value=0.0019  Score=43.64  Aligned_cols=37  Identities=24%  Similarity=0.251  Sum_probs=28.7

Q ss_pred             ChhhhHhHHHhhCCCCCCCccCccCCccccCcccHHHHhccc
Q psy5620           1 MTIFALGRTCYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGE   42 (72)
Q Consensus         1 ~tL~aLg~~a~~~~~~~gp~~g~K~a~kn~R~fteeqlk~g~   42 (72)
                      .||+||++.+.+++ + .|.|....   ++++|++|++++.+
T Consensus       152 ~cL~aL~~~a~~~G-~-~P~i~~l~---g~~~Ft~eei~~~~  188 (193)
T 3i6x_A          152 YCIHALSLYLFKLG-L-APQIQDLY---GKVDFTEEEINNMK  188 (193)
T ss_dssp             HHHHHHHHHHHHTT-S-SCCCCCCT---TTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHhhCC-C-CCCccccc---CCCCcCHHHHHHHH
Confidence            39999999999985 2 36555433   58999999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	72
d1p2xa_	159	a.40.1.1 (A:) Ras GTPase-activating-like protein r	6e-06

>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 159

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Ras GTPase-activating-like protein rng2
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.2 bits (91), Expect = 6e-06
 Identities = 6/42 (14%), Positives = 10/42 (23%), Gaps = 5/42 (11%)

Query: 1   MTIFALGRTCYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGE 42
             I AL                P    +    FT++ +    
Sbjct: 107 YCIHALSYFLSMQD-----LAPPLIKSDENLSFTDEDVSIIV 143

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	72
d1p2xa_	159	Ras GTPase-activating-like protein rng2 {Fission y	96.9
d1ujoa_	144	Transgelin {Mouse (Mus musculus) [TaxId: 10090]}	93.95

>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Ras GTPase-activating-like protein rng2
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.90  E-value=0.00025  Score=44.49  Aligned_cols=39  Identities=15%  Similarity=0.198  Sum_probs=31.4

Q ss_pred             hhhhHhHHHhhCCCCCCCccCccCCccccCcccHHHHhcccCee
Q psy5620           2 TIFALGRTCYKHPEFRGPFLGPKPSEENKRFFTEDQLRAGEGMI   45 (72)
Q Consensus         2 tL~aLg~~a~~~~~~~gp~~g~K~a~kn~R~fteeqlk~g~~~i   45 (72)
                      ||++|++.+++++ +.+|.++    .+++++|++|+|++.+..+
T Consensus       108 ~l~~l~~~~~~~~-~~~p~~~----~~~k~~f~ee~L~~~~~~l  146 (159)
T d1p2xa_         108 CIHALSYFLSMQD-LAPPLIK----SDENLSFTDEDVSIIVRRL  146 (159)
T ss_dssp             HHHHHHHHHHTTT-SSCCCCC----CCTTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC-CCCCccC----ccccCCCCHHHHHHHHHHH
Confidence            8999999999884 6666654    4567899999999877655

>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Transgelin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.95  E-value=0.016  Score=35.83  Aligned_cols=28  Identities=29%  Similarity=0.387  Sum_probs=22.7

Q ss_pred             ChhhhHhHHHhhC--CCCCC-CccCccCCcc
Q psy5620           1 MTIFALGRTCYKH--PEFRG-PFLGPKPSEE   28 (72)
Q Consensus         1 ~tL~aLg~~a~~~--~~~~g-p~~g~K~a~k   28 (72)
                      .||++|++.|+++  +.|.| |.+.||.+..
T Consensus       112 ~cL~~L~r~a~~~~~~~~~g~P~~~pk~~ps  142 (144)
T d1ujoa_         112 RTLMALGSLAVTKNDGNYRGDPNWFMKSGPS  142 (144)
T ss_dssp             HHHHHHHHHHHHHCSSCCSSCSTTTCSSSCC
T ss_pred             HHHHHHHHHHHHccCCCCCCCCCcCCCCCCC
Confidence            3899999999885  45777 8999998754