Psyllid ID: psy5692

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MLPVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVEEEEEKKKKN
Secondary Structure (PSIPRED)
cccEEEEEEEEEEEEEcEEEEccEEEEEEcccccccccEEEEEEEEccEEEEEccccccEEEEcccccEEEEEEEEEEcccEEEEEEHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEEEEcccEEEEccEEEEEEEccHHHHHHEEEEEEEcccccEccccccccEEEEEccccEEEEEEEEEEccEEEEEEEEEEEccccccc
Coil and Loop (DISEMBL)
MLPVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYlntdtggkyvvlssgdLYVQIRLSITGNLSVKKMKVEEEEEKKKKN
Flexible Loop (DISEMBL)
MLPVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLsitgnlsvkkmkveeeeekkkkn
Low Complexity Region (SEG)
MLPVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSvkkmkveeeeekkkkN
Disordered region (IsUnstruct)
****VKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLS****************
Disordered Region (DISOPRED)
MLPVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMK***********
Disordered Region (DISEMBL)
MLPVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKK*************
Disordered Region (DISPRO)
MLPVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVEEEEE*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLPVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVEEEEEKKKKN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	98	2.2.26 [Sep-21-2011]
O60469	2012	Down syndrome cell adhesi	yes	N/A	0.653	0.031	0.333	1e-05
Q8VHZ8	2013	Down syndrome cell adhesi	yes	N/A	0.653	0.031	0.318	2e-05
Q9ERC8	2013	Down syndrome cell adhesi	yes	N/A	0.653	0.031	0.318	2e-05
Q9VS29	2074	Down syndrome cell adhesi	no	N/A	0.693	0.032	0.328	7e-05
Q4VA61	2053	Down syndrome cell adhesi	no	N/A	0.642	0.030	0.338	0.0002
Q8TD84	2053	Down syndrome cell adhesi	no	N/A	0.591	0.028	0.359	0.0006

>sp|O60469|DSCAM_HUMAN Down syndrome cell adhesion molecule OS=Homo sapiens GN=DSCAM PE=1 SV=2

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 4   VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV 63
           V+++ Y + V  +   + GN AV +C IPS +  YI V SW +D V++     +G ++++
Sbjct: 121 VLREPYTVRVE-DQKTMRGNVAVFKCIIPSSVEAYITVVSWEKDTVSLV----SGSRFLI 175

Query: 64  LSSGDLYVQ 72
            S+G LY++
Sbjct: 176 TSTGALYIK 184

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38.
Homo sapiens (taxid: 9606)

>sp|Q8VHZ8|DSCAM_RAT Down syndrome cell adhesion molecule homolog OS=Rattus norvegicus GN=Dscam PE=1 SV=1

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 4   VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV 63
           V+++ Y + V  +   + GN AV +C IPS +  Y+ V SW +D V++     +G ++++
Sbjct: 121 VLREPYTVRVE-DQKTMRGNVAVFKCIIPSSVEAYVTVVSWEKDTVSLV----SGSRFLI 175

Query: 64  LSSGDLYVQ 72
            S+G LY++
Sbjct: 176 TSTGALYIK 184

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38 (By similarity). Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC.

Rattus norvegicus (taxid: 10116)

>sp|Q9ERC8|DSCAM_MOUSE Down syndrome cell adhesion molecule homolog OS=Mus musculus GN=Dscam PE=1 SV=1

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 4   VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV 63
           V+++ Y + V  +   + GN AV +C IPS +  Y+ V SW +D V++     +G ++++
Sbjct: 121 VLREPYTVRVE-DQKTMRGNVAVFKCIIPSSVEAYVTVVSWEKDTVSLV----SGSRFLI 175

Query: 64  LSSGDLYVQ 72
            S+G LY++
Sbjct: 176 TSTGALYIK 184

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38.

Mus musculus (taxid: 10090)

>sp|Q9VS29|DSCL_DROME Down syndrome cell adhesion molecule-like protein Dscam2 OS=Drosophila melanogaster GN=Dscam2 PE=2 SV=3

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 2/70 (2%)

Query: 4   VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYV 62
           VV Q Y+++V    +   G TA+LRC +P+++ E + V SW+ +  + IY +    GK+ 
Sbjct: 128 VVAQAYKVDVEV-LSAARGCTAILRCVVPTFVKELVRVVSWVHEPAIYIYPSLQGDGKFH 186

Query: 63  VLSSGDLYVQ 72
           +L +G+L + 
Sbjct: 187 LLPTGELLIH 196

Cell adhesion molecule.

Drosophila melanogaster (taxid: 7227)

>sp|Q4VA61|DSCL1_MOUSE Down syndrome cell adhesion molecule-like protein 1 homolog OS=Mus musculus GN=Dscaml1 PE=1 SV=2

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 5/68 (7%)

Query: 4   VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV 63
           V ++ Y + V  +   + GN AV +C IPS + EY+ V SW +D V+I        ++ +
Sbjct: 122 VFREPYTVRVE-DQRSMRGNVAVFKCLIPSSVQEYVSVVSWEKDTVSI----TPENRFFI 176

Query: 64  LSSGDLYV 71
            S G LY+
Sbjct: 177 TSHGGLYI 184

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Promotes both isoneuronal self-avoidance for creating an orderly neurite arborization in retinal rod bipolar cells and heteroneuronal self-avoidance to maintain mosaic spacing between AII amacrine cells.

Mus musculus (taxid: 10090)

>sp|Q8TD84|DSCL1_HUMAN Down syndrome cell adhesion molecule-like protein 1 OS=Homo sapiens GN=DSCAML1 PE=1 SV=2

 Score = 42.7 bits (99), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 6/64 (9%)

Query: 4   VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI-----YLNTDTG 58
           V ++ Y + V  +   + GN AV +C IPS + EY+ V SW +D V+I     +  T  G
Sbjct: 122 VFREPYTVRVE-DQRSMRGNVAVFKCLIPSSVQEYVSVVSWEKDTVSIIPEHRFFITYHG 180

Query: 59  GKYV 62
           G Y+
Sbjct: 181 GLYI 184

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Promotes both isoneuronal self-avoidance for creating an orderly neurite arborization in retinal rod bipolar cells and heteroneuronal self-avoidance to maintain mosaic spacing between AII amacrine cells.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
270009929	621	hypothetical protein TcasGA2_TC009253 [T	0.683	0.107	0.666	2e-19
189238865	1918	PREDICTED: similar to AGAP007092-PA [Tri	0.683	0.034	0.666	2e-19
221330976	1918	down syndrome cell adhesion molecule 4,	0.683	0.034	0.594	2e-16
442630978	1935	down syndrome cell adhesion molecule 4,	0.683	0.034	0.594	2e-16
221330980	1874	down syndrome cell adhesion molecule 4,	0.683	0.035	0.594	2e-16
157136612	1694	down syndrome cell adhesion molecule [Ae	0.683	0.039	0.594	2e-16
115646214	506	IP05371p [Drosophila melanogaster]	0.683	0.132	0.594	3e-16
195137168	111	GI21921 [Drosophila mojavensis] gi|19390	0.683	0.603	0.536	2e-14
195491267	1815	GE20723 [Drosophila yakuba] gi|194179590	0.530	0.028	0.622	1e-13
195135330	1816	GI16778 [Drosophila mojavensis] gi|19391	0.530	0.028	0.622	1e-13

>gi|270009929|gb|EFA06377.1| hypothetical protein TcasGA2_TC009253 [Tribolium castaneum]

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/69 (66%), Positives = 62/69 (89%), Gaps = 2/69 (2%)

Query: 4   VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYV 62
           VVKQKY++ V+ E+ VI GNTAVL+C+IP+Y++EY++VTSW+QD+ +NIY NTD GGKYV
Sbjct: 129 VVKQKYDVQVHDEY-VIAGNTAVLKCKIPNYVAEYVMVTSWVQDETINIYPNTDIGGKYV 187

Query: 63  VLSSGDLYV 71
           VLS+GDLY+
Sbjct: 188 VLSNGDLYI 196

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189238865|ref|XP_972891.2| PREDICTED: similar to AGAP007092-PA [Tribolium castaneum]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/69 (66%), Positives = 62/69 (89%), Gaps = 2/69 (2%)

Query: 4   VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYV 62
           VVKQKY++ V+ E+ VI GNTAVL+C+IP+Y++EY++VTSW+QD+ +NIY NTD GGKYV
Sbjct: 129 VVKQKYDVQVHDEY-VIAGNTAVLKCKIPNYVAEYVMVTSWVQDETINIYPNTDIGGKYV 187

Query: 63  VLSSGDLYV 71
           VLS+GDLY+
Sbjct: 188 VLSNGDLYI 196

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|221330976|ref|NP_001137908.1| down syndrome cell adhesion molecule 4, isoform D [Drosophila melanogaster] gi|221330978|ref|NP_001036596.2| down syndrome cell adhesion molecule 4, isoform E [Drosophila melanogaster] gi|220902513|gb|ACL83263.1| down syndrome cell adhesion molecule 4, isoform D [Drosophila melanogaster] gi|220902514|gb|ABI31245.2| down syndrome cell adhesion molecule 4, isoform E [Drosophila melanogaster]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/69 (59%), Positives = 58/69 (84%), Gaps = 2/69 (2%)

Query: 4   VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD-DVNIYLNTDTGGKYV 62
           VV QKY + V+ E+ V+ GNTAVL+CQ+PSYMSE+++VT+W+QD  +++Y NTD GGKY 
Sbjct: 124 VVNQKYAVQVHDEY-VMTGNTAVLKCQVPSYMSEFVLVTAWVQDTGMHLYPNTDIGGKYT 182

Query: 63  VLSSGDLYV 71
           VLS+G+LY+
Sbjct: 183 VLSNGELYI 191

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442630978|ref|NP_001261571.1| down syndrome cell adhesion molecule 4, isoform I [Drosophila melanogaster] gi|442630980|ref|NP_001261572.1| down syndrome cell adhesion molecule 4, isoform J [Drosophila melanogaster] gi|440215478|gb|AGB94266.1| down syndrome cell adhesion molecule 4, isoform I [Drosophila melanogaster] gi|440215479|gb|AGB94267.1| down syndrome cell adhesion molecule 4, isoform J [Drosophila melanogaster]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/69 (59%), Positives = 58/69 (84%), Gaps = 2/69 (2%)

Query: 4   VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD-DVNIYLNTDTGGKYV 62
           VV QKY + V+ E+ V+ GNTAVL+CQ+PSYMSE+++VT+W+QD  +++Y NTD GGKY 
Sbjct: 124 VVNQKYAVQVHDEY-VMTGNTAVLKCQVPSYMSEFVLVTAWVQDTGMHLYPNTDIGGKYT 182

Query: 63  VLSSGDLYV 71
           VLS+G+LY+
Sbjct: 183 VLSNGELYI 191

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|221330980|ref|NP_001137909.1| down syndrome cell adhesion molecule 4, isoform H [Drosophila melanogaster] gi|220902515|gb|ACL83264.1| down syndrome cell adhesion molecule 4, isoform H [Drosophila melanogaster]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/69 (59%), Positives = 58/69 (84%), Gaps = 2/69 (2%)

Query: 4   VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD-DVNIYLNTDTGGKYV 62
           VV QKY + V+ E+ V+ GNTAVL+CQ+PSYMSE+++VT+W+QD  +++Y NTD GGKY 
Sbjct: 124 VVNQKYAVQVHDEY-VMTGNTAVLKCQVPSYMSEFVLVTAWVQDTGMHLYPNTDIGGKYT 182

Query: 63  VLSSGDLYV 71
           VLS+G+LY+
Sbjct: 183 VLSNGELYI 191

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157136612|ref|XP_001663789.1| down syndrome cell adhesion molecule [Aedes aegypti] gi|108880975|gb|EAT45200.1| AAEL003498-PA [Aedes aegypti]

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/69 (59%), Positives = 58/69 (84%), Gaps = 2/69 (2%)

Query: 4   VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD-DVNIYLNTDTGGKYV 62
           VV QKY + V+ E+ V+ GNTAVL+CQ+PSY+ +Y++VT+W+QD  V++Y NTD GGKY+
Sbjct: 37  VVNQKYNVQVHDEY-VMTGNTAVLKCQVPSYIQDYVVVTAWVQDTGVHLYPNTDIGGKYI 95

Query: 63  VLSSGDLYV 71
           VLS+GDLY+
Sbjct: 96  VLSNGDLYI 104

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|115646214|gb|ABJ16979.1| IP05371p [Drosophila melanogaster]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/69 (59%), Positives = 58/69 (84%), Gaps = 2/69 (2%)

Query: 4   VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD-DVNIYLNTDTGGKYV 62
           VV QKY + V+ E+ V+ GNTAVL+CQ+PSYMSE+++VT+W+QD  +++Y NTD GGKY 
Sbjct: 50  VVNQKYAVQVHDEY-VMTGNTAVLKCQVPSYMSEFVLVTAWVQDTGMHLYPNTDIGGKYT 108

Query: 63  VLSSGDLYV 71
           VLS+G+LY+
Sbjct: 109 VLSNGELYI 117

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195137168|ref|XP_002012542.1| GI21921 [Drosophila mojavensis] gi|193906528|gb|EDW05395.1| GI21921 [Drosophila mojavensis]

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/69 (53%), Positives = 56/69 (81%), Gaps = 2/69 (2%)

Query: 4  VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD-DVNIYLNTDTGGKYV 62
            + +Y + V+ E+ V+ GNTAVL+CQ+PSYMSE+++VT+W+QD  +++Y NTD GGKY 
Sbjct: 21 TCQPEYTVQVHDEY-VMTGNTAVLKCQVPSYMSEFVLVTAWVQDTGMHLYPNTDIGGKYT 79

Query: 63 VLSSGDLYV 71
          VLS+G+LY+
Sbjct: 80 VLSNGELYI 88

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195491267|ref|XP_002093489.1| GE20723 [Drosophila yakuba] gi|194179590|gb|EDW93201.1| GE20723 [Drosophila yakuba]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 47/53 (88%), Gaps = 1/53 (1%)

Query: 20 ILGNTAVLRCQIPSYMSEYIIVTSWIQD-DVNIYLNTDTGGKYVVLSSGDLYV 71
          + GNTAVL+CQ+PSYMSE+++VT+W+QD  +++Y NTD GGKY VLS+G+LY+
Sbjct: 1  MTGNTAVLKCQVPSYMSEFVLVTAWVQDTGMHLYPNTDIGGKYTVLSNGELYI 53

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195135330|ref|XP_002012087.1| GI16778 [Drosophila mojavensis] gi|193918351|gb|EDW17218.1| GI16778 [Drosophila mojavensis]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 47/53 (88%), Gaps = 1/53 (1%)

Query: 20 ILGNTAVLRCQIPSYMSEYIIVTSWIQD-DVNIYLNTDTGGKYVVLSSGDLYV 71
          + GNTAVL+CQ+PSYMSE+++VT+W+QD  +++Y NTD GGKY VLS+G+LY+
Sbjct: 1  MTGNTAVLKCQVPSYMSEFVLVTAWVQDTGMHLYPNTDIGGKYTVLSNGELYI 53

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
FB|FBgn0263219	1918	Dscam4 "Down syndrome cell adh	0.683	0.034	0.594	3.1e-17
FB|FBgn0033159	2037	Dscam "Down syndrome cell adhe	0.693	0.033	0.457	5.7e-10
FB|FBgn0261046	2046	Dscam3 "Down syndrome cell adh	0.693	0.033	0.394	2e-07
UNIPROTKB|O60469	2012	DSCAM "Down syndrome cell adhe	0.653	0.031	0.333	2.1e-05
MGI|MGI:1196281	2013	Dscam "Down syndrome cell adhe	0.653	0.031	0.318	2.7e-05
RGD|619992	2013	Dscam "Down syndrome cell adhe	0.653	0.031	0.318	2.7e-05
UNIPROTKB|F1NY98	1994	DSCAM "Uncharacterized protein	0.642	0.031	0.338	4.3e-05
ZFIN|ZDB-GENE-050310-7	2024	dscama "Down syndrome cell adh	0.642	0.031	0.323	0.00024
MGI|MGI:2150309	2053	Dscaml1 "Down syndrome cell ad	0.642	0.030	0.338	0.00032
RGD|1304887	2111	Dscaml1 "Down syndrome cell ad	0.642	0.029	0.338	0.00033

FB|FBgn0263219 Dscam4 "Down syndrome cell adhesion molecule 4" [Drosophila melanogaster (taxid:7227)]

 Score = 227 (85.0 bits), Expect = 3.1e-17, P = 3.1e-17
 Identities = 41/69 (59%), Positives = 58/69 (84%)

Query:     4 VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYV 62
             VV QKY + V+ E+ V+ GNTAVL+CQ+PSYMSE+++VT+W+QD  +++Y NTD GGKY 
Sbjct:   124 VVNQKYAVQVHDEY-VMTGNTAVLKCQVPSYMSEFVLVTAWVQDTGMHLYPNTDIGGKYT 182

Query:    63 VLSSGDLYV 71
             VLS+G+LY+
Sbjct:   183 VLSNGELYI 191

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0007155 "cell adhesion" evidence=ISS

GO:0042802 "identical protein binding" evidence=ISS

FB|FBgn0033159 Dscam "Down syndrome cell adhesion molecule" [Drosophila melanogaster (taxid:7227)]

 Score = 159 (61.0 bits), Expect = 5.7e-10, P = 5.7e-10
 Identities = 32/70 (45%), Positives = 49/70 (70%)

Query:     4 VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDT-GGKYV 62
             VV Q YE  +  E+ VI GN AVL+C IPS++++++ V SWI D+ N+   +D   GKY+
Sbjct:   136 VVNQFYEAEIMTEY-VIRGNAAVLKCSIPSFVADFVRVESWIDDEGNVLSFSDNYDGKYL 194

Query:    63 VLSSGDLYVQ 72
             VL SG+L+++
Sbjct:   195 VLPSGELHIR 204

GO:0005887 "integral to plasma membrane" evidence=ISM;ISS

GO:0007411 "axon guidance" evidence=IGI;IMP;TAS

GO:0008046 "axon guidance receptor activity" evidence=IMP;NAS

GO:0007422 "peripheral nervous system development" evidence=IMP

GO:0016319 "mushroom body development" evidence=IMP

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0006909 "phagocytosis" evidence=IMP

GO:0051635 "bacterial cell surface binding" evidence=IDA

GO:0048666 "neuron development" evidence=IMP

GO:0030424 "axon" evidence=IDA

GO:0070593 "dendrite self-avoidance" evidence=IMP;IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0042802 "identical protein binding" evidence=IPI

GO:0021551 "central nervous system morphogenesis" evidence=IMP

GO:0048846 "axon extension involved in axon guidance" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

FB|FBgn0261046 Dscam3 "Down syndrome cell adhesion molecule 3" [Drosophila melanogaster (taxid:7227)]

 Score = 135 (52.6 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 28/71 (39%), Positives = 49/71 (69%)

Query:     4 VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQ-DDVNIYLNTDTGGKYV 62
             VV++++ ++V     V LGN+A+++C IP Y+  Y+ V SW + +++ +   +D  G+YV
Sbjct:   135 VVRRQFHVHVE-NTEVYLGNSALIKCAIPEYVRPYVRVASWHRGEEILLPDLSDVAGRYV 193

Query:    63 VLS-SGDLYVQ 72
             VL+ SGDLYV+
Sbjct:   194 VLAASGDLYVR 204

GO:0007155 "cell adhesion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0007156 "homophilic cell adhesion" evidence=IC

GO:0042802 "identical protein binding" evidence=IPI

GO:0005887 "integral to plasma membrane" evidence=ISM

UNIPROTKB|O60469 DSCAM "Down syndrome cell adhesion molecule" [Homo sapiens (taxid:9606)]

 Score = 116 (45.9 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 23/69 (33%), Positives = 42/69 (60%)

Query:     4 VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV 63
             V+++ Y + V  +   + GN AV +C IPS +  YI V SW +D V++     +G ++++
Sbjct:   121 VLREPYTVRVE-DQKTMRGNVAVFKCIIPSSVEAYITVVSWEKDTVSLV----SGSRFLI 175

Query:    64 LSSGDLYVQ 72
              S+G LY++
Sbjct:   176 TSTGALYIK 184

GO:0007155 "cell adhesion" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0042327 "positive regulation of phosphorylation" evidence=IDA

GO:0007162 "negative regulation of cell adhesion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS;TAS

GO:0030426 "growth cone" evidence=ISS

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=IDA

GO:0070593 "dendrite self-avoidance" evidence=ISS

GO:0030424 "axon" evidence=ISS

GO:0016020 "membrane" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0007399 "nervous system development" evidence=TAS

MGI|MGI:1196281 Dscam "Down syndrome cell adhesion molecule" [Mus musculus (taxid:10090)]

 Score = 115 (45.5 bits), Expect = 2.7e-05, P = 2.7e-05
 Identities = 22/69 (31%), Positives = 42/69 (60%)

Query:     4 VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV 63
             V+++ Y + V  +   + GN AV +C IPS +  Y+ V SW +D V++     +G ++++
Sbjct:   121 VLREPYTVRVE-DQKTMRGNVAVFKCIIPSSVEAYVTVVSWEKDTVSLV----SGSRFLI 175

Query:    64 LSSGDLYVQ 72
              S+G LY++
Sbjct:   176 TSTGALYIK 184

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IMP

GO:0007399 "nervous system development" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030424 "axon" evidence=IDA

GO:0030426 "growth cone" evidence=IDA

GO:0042327 "positive regulation of phosphorylation" evidence=ISO

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=ISO;IDA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IMP

GO:0070593 "dendrite self-avoidance" evidence=IMP

RGD|619992 Dscam "Down syndrome cell adhesion molecule" [Rattus norvegicus (taxid:10116)]

 Score = 115 (45.5 bits), Expect = 2.7e-05, P = 2.7e-05
 Identities = 22/69 (31%), Positives = 42/69 (60%)

Query:     4 VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV 63
             V+++ Y + V  +   + GN AV +C IPS +  Y+ V SW +D V++     +G ++++
Sbjct:   121 VLREPYTVRVE-DQKTMRGNVAVFKCIIPSSVEAYVTVVSWEKDTVSLV----SGSRFLI 175

Query:    64 LSSGDLYVQ 72
              S+G LY++
Sbjct:   176 TSTGALYIK 184

GO:0005886 "plasma membrane" evidence=ISO;ISS

GO:0007155 "cell adhesion" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=ISO;ISS

GO:0007626 "locomotory behavior" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030424 "axon" evidence=ISO;ISS

GO:0030426 "growth cone" evidence=ISO;ISS

GO:0042327 "positive regulation of phosphorylation" evidence=ISO;ISS

GO:0048813 "dendrite morphogenesis" evidence=ISO

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=ISO;IMP

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=ISO

GO:0070593 "dendrite self-avoidance" evidence=ISO;ISS

UNIPROTKB|F1NY98 DSCAM "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 113 (44.8 bits), Expect = 4.3e-05, P = 4.3e-05
 Identities = 23/68 (33%), Positives = 41/68 (60%)

Query:     4 VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV 63
             V+++ Y + V  +   + GN AV +C IPS +  YI V SW +D V++     +G ++++
Sbjct:   107 VLREPYTVRVE-DQKAMRGNVAVFKCIIPSSVEAYITVVSWEKDTVSLV----SGPRFLI 161

Query:    64 LSSGDLYV 71
              S+G LY+
Sbjct:   162 TSTGALYI 169

GO:0005886 "plasma membrane" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0042327 "positive regulation of phosphorylation" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=IEA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IEA

GO:0070593 "dendrite self-avoidance" evidence=IEA

ZFIN|ZDB-GENE-050310-7 dscama "Down syndrome cell adhesion molecule a" [Danio rerio (taxid:7955)]

 Score = 106 (42.4 bits), Expect = 0.00024, P = 0.00024
 Identities = 22/68 (32%), Positives = 40/68 (58%)

Query:     4 VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV 63
             V+++ Y + V  +   + G+ AV +C IPS +  YI V SW +D V +     +G ++++
Sbjct:   121 VLREPYTVRVA-DQTAMRGSVAVFKCIIPSSVENYITVVSWERDTVPLV----SGARFLI 175

Query:    64 LSSGDLYV 71
              S+G LY+
Sbjct:   176 TSTGALYI 183

GO:0005887 "integral to plasma membrane" evidence=IDA

GO:0042074 "cell migration involved in gastrulation" evidence=IMP

MGI|MGI:2150309 Dscaml1 "Down syndrome cell adhesion molecule like 1" [Mus musculus (taxid:10090)]

 Score = 105 (42.0 bits), Expect = 0.00032, P = 0.00032
 Identities = 23/68 (33%), Positives = 38/68 (55%)

Query:     4 VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV 63
             V ++ Y + V  + ++  GN AV +C IPS + EY+ V SW +D V+I        ++ +
Sbjct:   122 VFREPYTVRVEDQRSM-RGNVAVFKCLIPSSVQEYVSVVSWEKDTVSI----TPENRFFI 176

Query:    64 LSSGDLYV 71
              S G LY+
Sbjct:   177 TSHGGLYI 184

GO:0005886 "plasma membrane" evidence=ISA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=ISO;ISA

GO:0007162 "negative regulation of cell adhesion" evidence=IMP

GO:0007399 "nervous system development" evidence=IEA

GO:0007420 "brain development" evidence=ISO

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016338 "calcium-independent cell-cell adhesion" evidence=ISA

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0048704 "embryonic skeletal system morphogenesis" evidence=ISO

GO:0070593 "dendrite self-avoidance" evidence=IMP

RGD|1304887 Dscaml1 "Down syndrome cell adhesion molecule-like 1" [Rattus norvegicus (taxid:10116)]

 Score = 105 (42.0 bits), Expect = 0.00033, P = 0.00033
 Identities = 23/68 (33%), Positives = 38/68 (55%)

Query:     4 VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV 63
             V ++ Y + V  + ++  GN AV +C IPS + EY+ V SW +D V+I        ++ +
Sbjct:   180 VFREPYTVRVEDQRSM-RGNVAVFKCLIPSSVQEYVSVVSWEKDTVSI----TPENRFFI 234

Query:    64 LSSGDLYV 71
              S G LY+
Sbjct:   235 TSHGGLYI 242

GO:0007156 "homophilic cell adhesion" evidence=IEA;ISO

GO:0007162 "negative regulation of cell adhesion" evidence=IEA;ISO

GO:0007420 "brain development" evidence=IEA;ISO

GO:0009986 "cell surface" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0048704 "embryonic skeletal system morphogenesis" evidence=IEA;ISO

GO:0070593 "dendrite self-avoidance" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	98
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.44
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	98.35
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.19
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	98.01
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	97.88
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	97.83
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	97.74
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	97.66
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	97.63
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	97.54
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	97.52
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	97.5
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	97.5
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	97.47
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	97.29
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	97.28
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	97.26
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	97.24
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	97.22
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	97.21
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	97.18
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	97.16
smart00409	86	IG Immunoglobulin.	97.12
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	97.12
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	97.06
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	97.05
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	97.04
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	97.03
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	96.99
KOG4221|consensus	1381		96.97
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	96.97
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	96.95
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	96.95
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	96.9
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	96.88
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	96.87
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	96.87
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	96.83
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	96.82
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	96.82
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	96.82
smart00408	63	IGc2 Immunoglobulin C-2 Type.	96.69
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	96.65
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	96.65
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	96.63
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	96.63
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	96.61
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	96.59
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	96.56
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	96.54
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	96.5
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	96.49
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	96.46
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	96.43
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	96.36
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	96.36
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	96.31
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	96.26
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	96.24
PF00047	64	ig: Immunoglobulin domain The Prosite family only	96.22
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	96.21
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	96.18
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	96.08
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	96.06
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	96.03
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	96.02
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	95.92
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	95.88
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	95.87
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	95.86
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	95.78
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	95.72
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	95.63
KOG3513|consensus	1051		95.6
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	95.5
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	95.45
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	95.4
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	95.38
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	95.29
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	95.22
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	95.06
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	94.91
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	94.88
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	94.68
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	94.49
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	94.39
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	94.25
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	94.24
PHA02785	326	IL-beta-binding protein; Provisional	94.15
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	94.12
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	93.9
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	93.83
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	93.82
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	93.79
PHA02826	227	IL-1 receptor-like protein; Provisional	93.74
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	93.56
smart00406	81	IGv Immunoglobulin V-Type.	93.53
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	93.44
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	93.17
KOG4222|consensus	1281		93.08
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	93.07
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	92.93
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	92.87
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	92.78
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	92.73
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	92.16
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	92.14
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	91.97
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	91.91
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	91.66
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	91.55
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	91.19
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	91.1
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	91.07
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	91.06
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	90.99
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	90.92
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	90.6
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	90.24
PHA02785	326	IL-beta-binding protein; Provisional	90.2
KOG4221|consensus	1381		90.15
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	90.01
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	89.9
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	89.47
cd05770	93	IgC_beta2m Class I major histocompatibility comple	89.32
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	89.25
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	89.15
PHA02826	227	IL-1 receptor-like protein; Provisional	88.9
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	88.36
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	88.12
KOG3513|consensus	1051		87.69
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	86.19
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	85.85
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	85.56
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	85.27
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	85.01
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	83.94
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	83.8
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	83.29
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	83.27
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	82.35
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	82.3
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	81.55
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	81.14
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	81.08
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	80.27
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	80.2

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.44  E-value=5e-07  Score=61.51  Aligned_cols=58  Identities=19%  Similarity=0.320  Sum_probs=46.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGN   80 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n   80 (98)
                      .|..|.+++|.|..|..--+  -..+|+.++..+..   .++|+.+.++|.|||++|+..|..
T Consensus        14 ~V~eG~~~~L~C~pP~g~P~--P~i~W~~~~~~~i~---~~~Ri~~~~~GnL~fs~v~~~D~g   71 (95)
T cd05845          14 EVEEGDSVVLPCNPPKSAVP--LRIYWMNSDLLHIT---QDERVSMGQNGNLYFANVEEQDSH   71 (95)
T ss_pred             EEecCCCEEEEecCCCCCCC--CEEEEECCCCcccc---ccccEEECCCceEEEEEEehhhCC
Confidence            56789999999997655444  34689987744333   479999999999999999999985

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=98.35  E-value=7.6e-07  Score=56.31  Aligned_cols=58  Identities=10%  Similarity=0.158  Sum_probs=44.9

Q ss_pred             cCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          22 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      |.+|+|.|.+..+-.   ...+|.+++..+.+    ++||.++++|.|.|++++.+|.-  .-.|..
T Consensus         1 G~~~~l~C~~~g~P~---p~v~W~k~~~~l~~----~~r~~~~~~g~L~I~~v~~~D~G--~Y~C~A   58 (73)
T cd05852           1 GGRVIIECKPKAAPK---PKFSWSKGTELLVN----NSRISIWDDGSLEILNITKLDEG--SYTCFA   58 (73)
T ss_pred             CCeEEEEEecceeCC---CEEEEEeCCEeccc----CCCEEEcCCCEEEECcCChhHCE--EEEEEE
Confidence            789999999875543   25689999865544    57999999999999999987763  355544

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.19  E-value=3.6e-06  Score=57.40  Aligned_cols=66  Identities=20%  Similarity=0.390  Sum_probs=47.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .|..|..|+|.|..|...-.  ...+|..++..+... +...+++..++|.|||.+|+.+|..  .-.|-.
T Consensus        14 ~v~eG~~~~L~C~pP~g~P~--p~~~W~k~~~~~~~~-~d~r~~~~~~~G~L~fs~v~~~D~g--~Y~C~A   79 (96)
T cd05727          14 KVKEGWGVVLFCDPPPHYPD--LSYRWLLNEFPNFIP-EDGRRFVSQTNGNLYIAKVEASDRG--NYSCFV   79 (96)
T ss_pred             eeeeCCcEEEeeCCCCCCCC--CEEEEEECCcccccc-cCCCeEEeCCCCcEEEeecCHhhCc--eeEEEE
Confidence            57889999999998877665  567999998433221 1234555557999999999999873  344543

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=98.01  E-value=1e-05  Score=53.94  Aligned_cols=64  Identities=20%  Similarity=0.252  Sum_probs=47.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeeehHH
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVEEE   91 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~~~   91 (98)
                      .|..|++|.|.|..++.    ..-.+|.+++..|.++   .+||.+ ..|.|.|+|++..|.  -+-.|-.+|.
T Consensus         7 ~v~~G~~v~L~C~~~~~----~~~i~W~~ng~~i~~~---~~r~~~-~~~~L~I~nv~~~Ds--G~Y~C~a~e~   70 (87)
T cd05873           7 TFKLGNNAELKCSPKSN----LARVVWKFDGKVLTPE---SAKYLL-YRDGLLIFNASEADA--GRYQCLSVEK   70 (87)
T ss_pred             EEECCCCEEEEEECCCC----CCeEEEEECCEECCCC---CceEEE-ECCcEEEeCCCHHHC--EEEEEEEEec
Confidence            67899999999996542    2457899999877552   368865 568899999988875  4455555443

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=97.88  E-value=4.6e-05  Score=47.33  Aligned_cols=64  Identities=22%  Similarity=0.333  Sum_probs=46.0

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+..|.+|.|.|.++..-.  .-...|.+++..+.+   .++++.+.++|.|.|++++.+|.  ..-.|..
T Consensus         7 ~~~~G~~v~l~C~~~~g~p--~p~i~W~k~g~~~~~---~~~~~~~~~~~~L~I~~~~~~D~--G~Y~C~a   70 (86)
T cd05724           7 QVAVGEMAVLECSPPRGHP--EPTVSWRKDGQPLNL---DNERVRIVDDGNLLIAEARKSDE--GTYKCVA   70 (86)
T ss_pred             EEeCCCCEEEEEECCCCCC--CCEEEEEECCEECCC---CCCCEEEccCCEEEEeECCcccC--EEEEEEE
Confidence            5678999999998742211  124569999876654   35788888999999999998774  3445544

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=97.83  E-value=3.6e-05  Score=47.64  Aligned_cols=59  Identities=20%  Similarity=0.320  Sum_probs=43.9

Q ss_pred             ecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          21 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        21 rGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .|.++.|.|.+...-.-   ..+|.+++..+.+    +.++.+.++|.|.|.+++.+|.-  .-.|..
T Consensus         1 eG~~v~l~C~~~g~P~p---~i~W~k~g~~~~~----~~~~~~~~~~~L~I~~v~~~D~G--~Y~C~A   59 (74)
T cd05745           1 EGQTVDFLCEAQGYPQP---VIAWTKGGSQLSV----DRRHLVLSSGTLRISRVALHDQG--QYECQA   59 (74)
T ss_pred             CCCeEEEEeECCEecCC---EEEEEECCEECCC----CCCeEEccCCeEEEeeCCHHhCE--EEEEEE
Confidence            38999999998543332   5789999876533    56888999999999999987743  344543

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=97.74  E-value=5.6e-05  Score=46.52  Aligned_cols=58  Identities=10%  Similarity=0.138  Sum_probs=43.5

Q ss_pred             cCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          22 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      |.++.|.|.+-..-   ....+|.+++..+.+    ++++.++++|.|.|+++..+|.-  .-+|..
T Consensus         1 G~~v~L~C~~~g~P---~p~v~W~k~~~~~~~----~~~~~~~~~~~L~i~~v~~~D~G--~Y~C~a   58 (73)
T cd04969           1 GGDVIIECKPKAAP---KPTISWSKGTELLTN----SSRICIWPDGSLEILNVTKSDEG--KYTCFA   58 (73)
T ss_pred             CCeEEEEEeeeEcC---CCEEEEEECCEEccc----CCCEEECCCCeEEEccCChhHCE--EEEEEE
Confidence            78999999863221   235789999977755    67999999999999999887754  345544

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=97.66  E-value=6e-05  Score=50.24  Aligned_cols=61  Identities=21%  Similarity=0.322  Sum_probs=46.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      -|+.|++++|.|...|    ..+...|.++...|-+    ++|+.+.++| |+|+.++..|.-  .--|.-+
T Consensus         7 tv~~g~~v~L~C~~~s----~~A~v~W~~ng~~l~~----~~r~~~~~~G-LlI~~~~~~dsG--~Y~C~s~   67 (85)
T cd05872           7 TVAPGADVVLPCQLRS----NLASPVWLFNGTPLNA----QFSYRVGTDG-LLILVTSPEHSG--TYRCYSE   67 (85)
T ss_pred             EEecCCCEEEECCCCC----CCccEEEEECCcccCC----CcceEEeCCC-CEEEECCHhhCE--EEEEEEe
Confidence            6789999999999664    3558899999977644    6899999998 669999877654  3344433

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=97.63  E-value=0.00019  Score=45.87  Aligned_cols=62  Identities=15%  Similarity=0.299  Sum_probs=43.8

Q ss_pred             cCeEEEEccCCCCccceeEEeEEccCC-ee-eecC--cCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          22 GNTAVLRCQIPSYMSEYIIVTSWIQDD-VN-IYLN--TDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd-~~-I~p~--~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      |.++.|.|.+...-.-   ...|.+++ .. +++.  ....+||.+.++|.|.|.+++.+|.  ..-.|..
T Consensus         1 G~~v~L~C~~~g~P~p---~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~--G~Y~C~a   66 (90)
T cd05726           1 GRTVTFQCEATGNPQP---AIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDV--GYYICQT   66 (90)
T ss_pred             CCEEEEEEECCccCCC---EEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhC--EEEEEEE
Confidence            7899999998654333   35699987 32 3332  2346899999999999999998775  3455543

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.54  E-value=0.0001  Score=49.12  Aligned_cols=60  Identities=12%  Similarity=0.187  Sum_probs=42.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-eeeecCc---CCCceEEEcc----CccEEEEeEeeecCC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNT---DTGGKYVVLS----SGDLYVQIRLSITGN   80 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-~~I~p~~---~~dgKY~vlp----sGeL~Ir~v~~~~~n   80 (98)
                      .|..|.+|+|+|.+...   ......|..++ ..++-..   -.++||.+..    ++.|.|+||+.+|+=
T Consensus         8 tv~~G~tv~L~C~v~g~---~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G   75 (95)
T cd05882           8 TVAVGGTVTLKCGVKEH---DNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEG   75 (95)
T ss_pred             EEecCCcEEEEEEEeCC---CCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCE
Confidence            67899999999997542   23447999988 3333211   1367887652    468999999999863

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=97.52  E-value=0.00057  Score=43.95  Aligned_cols=70  Identities=16%  Similarity=0.196  Sum_probs=48.6

Q ss_pred             eeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeec---CCcceeeeeeh
Q psy5692          14 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSIT---GNLSVKKMKVE   89 (98)
Q Consensus        14 ~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~---~n~~~~~~~~~   89 (98)
                      .+. .+..|++++|.|.+.+.-   .-...|.+|+..|.+.  .+.++.++++|.|.|.+++.+.   .....-.|...
T Consensus         7 ~~~-~~~~g~~v~l~C~v~g~P---~p~i~W~k~g~~l~~~--~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~   79 (95)
T cd05722           7 SDI-VAVRGGPVVLNCSAEGEP---PPKIEWKKDGVLLNLV--SDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQ   79 (95)
T ss_pred             CCe-EEcCCCCEEEeeecccCC---CCEEEEEECCeECccc--cCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEE
Confidence            444 677899999999986553   2345999998766432  3467889999999999986432   33334555543

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=97.50  E-value=0.00017  Score=45.92  Aligned_cols=66  Identities=17%  Similarity=0.278  Sum_probs=46.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeeehH
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVEE   90 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~~   90 (98)
                      .+..|.++.|.|.+.+   .. .-..|.+++..+.+.....+++.+.++ .|.|.+++.+|.  ..-.|...+
T Consensus         7 ~v~~g~~v~L~C~~~~---p~-~~i~W~k~~~~~~~~~~~~~~~~~~~~-~L~I~~~~~~D~--G~Y~C~a~~   72 (89)
T cd04979           7 TVVEGNSVFLECSPKS---NL-ASVVWLFQGGPLQRKEEPEERLLVTED-GLLIRSVSPADA--GVYTCQSVE   72 (89)
T ss_pred             EEECCCcEEEEEeCCC---CC-ceEEEEECCcccccccCcCceEEEcCC-CEEEccCCHHHC--EEEEEEEec
Confidence            4678999999999764   22 346999999665442223468877765 599999998765  566676643

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=97.50  E-value=0.00035  Score=47.78  Aligned_cols=59  Identities=20%  Similarity=0.434  Sum_probs=45.0

Q ss_pred             ceeecCeEEEEcc-CCCCccceeEEeEEccCC-----eee--e-cC-------cCCCceEEEccCccEEEEeEeeecCC
Q psy5692          18 NVILGNTAVLRCQ-IPSYMSEYIIVTSWIQDD-----VNI--Y-LN-------TDTGGKYVVLSSGDLYVQIRLSITGN   80 (98)
Q Consensus        18 ~VirGNtAVLkC~-IPs~V~d~V~V~SW~~Dd-----~~I--~-p~-------~~~dgKY~vlpsGeL~Ir~v~~~~~n   80 (98)
                      .|+.|..++|.|. .|    +-+...+|.+..     ..|  | |.       ....||+.+.++|.|.|++++.+|.-
T Consensus         9 ~~~~G~~V~L~v~~~p----~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G   83 (105)
T cd05774           9 QVAEGENVLLLVHNLP----ENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTG   83 (105)
T ss_pred             cccCCCCEEEEecCCC----CCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCE
Confidence            7889999999998 35    566677999973     222  2 21       12579999999999999999888764

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=97.47  E-value=0.00022  Score=47.20  Aligned_cols=55  Identities=24%  Similarity=0.330  Sum_probs=39.6

Q ss_pred             CeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEE----ccCccEEEEeEeeecC
Q psy5692          23 NTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV----LSSGDLYVQIRLSITG   79 (98)
Q Consensus        23 NtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~v----lpsGeL~Ir~v~~~~~   79 (98)
                      .+|+|.|.++.. -+.-....|.+|+..|.. ...+++|.+    ..+|.|.|+|++..|.
T Consensus         1 ~~~~l~C~v~~d-~~l~~~~~W~~dg~~i~~-~~~~~~~~~~~~~~~~~~L~I~nv~~~ds   59 (85)
T cd05853           1 ESIVLPCQVSHD-HSLDIVFTWSFNGHLIDF-QKDGDHFERVGGQDSAGDLMIRSIQLKHA   59 (85)
T ss_pred             CcEEEEEEeccC-CCCCcEEEEEECCEECcc-cCCCccEEEeccCCCCCcEEEecCCHHHC
Confidence            378999997531 122344699999988843 234668888    4789999999998875

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.29  E-value=0.00061  Score=44.89  Aligned_cols=67  Identities=12%  Similarity=0.176  Sum_probs=44.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-eeeecC---cCCCceEEEc----cCccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLN---TDTGGKYVVL----SSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-~~I~p~---~~~dgKY~vl----psGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .|..|.+|.|.|.+...-...   .+|...+ ..|+..   ...++||.+.    .++.|.|++++.+|.  ..=.|.+.
T Consensus         8 ~v~eG~~v~L~C~~~~~p~~~---v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~Ds--G~Y~C~~~   82 (95)
T cd07701           8 TVVEGGTANLTCRVDQNDNTS---LQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDE--GQYTCSLF   82 (95)
T ss_pred             EEecCCcEEEEEEEecCCceE---EEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccC--EEEEEEeE
Confidence            677999999999875442222   5798654 444422   1246899874    236799999999886  55666554

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=97.28  E-value=0.00057  Score=45.26  Aligned_cols=67  Identities=12%  Similarity=0.201  Sum_probs=47.6

Q ss_pred             EEeeeeceeecCeEEEEccCCCCccceeEEeEEccCC-eeeecCcCCCceEEEccCc---cEEEEeEeeecCCcceeeee
Q psy5692          12 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYVVLSSG---DLYVQIRLSITGNLSVKKMK   87 (98)
Q Consensus        12 ~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-~~I~p~~~~dgKY~vlpsG---eL~Ir~v~~~~~n~~~~~~~   87 (98)
                      ...+. .+..|.+|.|.|.+...-.    ...|..++ ..+.+    ++||.+.++|   .|.|+++..+|.  ..=.|.
T Consensus         6 ~~~~~-~v~~G~~v~l~C~~~G~P~----~v~W~k~~g~~~~~----~~r~~~~~~g~~~~L~I~~v~~~D~--G~Y~C~   74 (92)
T cd05866           6 SLSKV-ELSVGESKFFTCTAIGEPE----SIDWYNPQGEKIVS----SQRVVVQKEGVRSRLTIYNANIEDA--GIYRCQ   74 (92)
T ss_pred             Eecce-EEcCCCeEEEEEEEEEeCC----eEEEEeCCCeEecC----CCCEEEEeCCCeeEEEEecCChHHC--EEEEEE
Confidence            34454 6778999999999753321    45799765 55544    5789998888   799999988875  445555


Q ss_pred             eh
Q psy5692          88 VE   89 (98)
Q Consensus        88 ~~   89 (98)
                      ..
T Consensus        75 A~   76 (92)
T cd05866          75 AT   76 (92)
T ss_pred             EE
Confidence            43

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=97.26  E-value=0.00083  Score=42.22  Aligned_cols=55  Identities=16%  Similarity=0.301  Sum_probs=40.6

Q ss_pred             cCeEEEEccCCCCccceeEEeEEccCC-----eee---------ecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692          22 GNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI---------YLNTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I---------~p~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      |-+++|.|.++.   .-+.-..|.+.+     ..+         .+.....||+.+.++|.|.|++++.+|.
T Consensus         1 G~~VtL~c~~~~---~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~Ds   69 (92)
T cd05741           1 GESVTLPVSNLP---ENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDS   69 (92)
T ss_pred             CCcEEEEcccCC---CCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhc
Confidence            778999999875   344567787765     111         1223457899999999999999998885

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=97.24  E-value=0.0015  Score=42.39  Aligned_cols=76  Identities=12%  Similarity=0.114  Sum_probs=50.6

Q ss_pred             ceEEEEeeeeceeecCeEEEEccCCCCccceeEEeEEccCC--eeeecC-cCCCceEEEcc---CccEEEEeEeeecCCc
Q psy5692           8 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VNIYLN-TDTGGKYVVLS---SGDLYVQIRLSITGNL   81 (98)
Q Consensus         8 ~Yev~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd--~~I~p~-~~~dgKY~vlp---sGeL~Ir~v~~~~~n~   81 (98)
                      |.-....+. .+..|.+|+|.|.+...-.   -..+|.+.+  ..+.+. ...++||.+.+   .+.|.|++++.+|.  
T Consensus         3 p~i~~~~~~-~~~~G~~v~l~C~~~G~P~---p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~--   76 (98)
T cd05870           3 PHIIQLKNE-TTVENGAATLSCKAEGEPI---PEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDS--   76 (98)
T ss_pred             CEEEeeccE-EEcCCCcEEEEEecccCCC---CeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCC--
Confidence            334455666 8889999999999854432   247898854  333221 12467999875   35799999998875  


Q ss_pred             ceeeeeeh
Q psy5692          82 SVKKMKVE   89 (98)
Q Consensus        82 ~~~~~~~~   89 (98)
                      ..-.|...
T Consensus        77 G~Y~C~A~   84 (98)
T cd05870          77 GRYDCEAA   84 (98)
T ss_pred             EEEEEEEe
Confidence            35566543

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=97.22  E-value=0.0005  Score=44.66  Aligned_cols=66  Identities=17%  Similarity=0.185  Sum_probs=45.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccC-------ccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS-------GDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlps-------GeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      ++..|.+|.|.|.+-.+  .......|..++..|-+.  .++||.+..+       +.|.|.+++.+|. ...-.|..
T Consensus        12 ~~~~G~~v~L~C~~~g~--P~P~~v~W~~~~~~i~~~--~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~-~G~Y~C~A   84 (98)
T cd05758          12 YAILGDKGRVECFIFST--PPPDRIVWTWKENELESG--SSGRYTVETDPSPGGVLSTLTISNTQESDF-QTSYNCTA   84 (98)
T ss_pred             EEeCCCcEEEEEEEccc--CCCCEeEEEECCEEccCC--CCCCEEEEEecCCCceEEEEEECCcccccc-ceeEEEEE
Confidence            56799999999998533  223457899888766432  2479988765       3799999997651 23445543

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=97.21  E-value=0.00065  Score=43.55  Aligned_cols=62  Identities=13%  Similarity=0.189  Sum_probs=45.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccC---ccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS---GDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlps---GeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+..|.++.|.|.+-.+-.   -..+|.+++..+.+    +.||.+.++   +.|.|.+++.+|.-  .-+|..
T Consensus        14 ~~~~G~~~~L~C~~~g~P~---p~v~W~k~g~~l~~----~~~~~~~~~~~~~~L~i~~~~~~D~G--~Y~C~a   78 (92)
T cd05747          14 TVSEGESARFSCDVDGEPA---PTVTWMREGQIIVS----SQRHQITSTEYKSTFEISKVQMSDEG--NYTVVV   78 (92)
T ss_pred             EEeCCCcEEEEEEEeecCC---CEEEEEECCEECCC----CCcEEEEEcCCeeEEEECCCCcccCE--eEEEEE
Confidence            6779999999998754433   24899999876643    568888764   58999999887764  355544

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=97.18  E-value=0.00046  Score=42.21  Aligned_cols=55  Identities=15%  Similarity=0.210  Sum_probs=40.2

Q ss_pred             EEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          25 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      +.|.|.+...-.-   ..+|.+|+..|.+    +++|.+.++|.|.|.+++.+|.  -.-.|..
T Consensus         1 v~L~C~~~g~P~p---~i~W~k~g~~~~~----~~~~~~~~~~~L~I~~~~~~D~--G~Y~C~a   55 (69)
T cd05746           1 VQIPCSAQGDPEP---TITWNKDGVQVTE----SGKFHISPEGYLAIRDVGVADQ--GRYECVA   55 (69)
T ss_pred             CEeEecceEeCCC---EEEEEECCEECCC----CCCEEECCCCEEEECcCChhhC--EEEEEEE
Confidence            3689987544333   3689999876654    5899999999999999998875  2344543

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=97.16  E-value=0.00042  Score=43.02  Aligned_cols=57  Identities=16%  Similarity=0.201  Sum_probs=40.2

Q ss_pred             EEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          25 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      |+|.|.+..+-   .-..+|++++..|-+.  .+++|.++++|.|.|++++..|.  ..-.|..
T Consensus         1 a~l~C~~~G~P---~p~v~W~k~~~~~~~~--~~~~~~~~~~g~L~i~~~~~~D~--G~Y~C~a   57 (74)
T cd05738           1 ATMLCAASGNP---DPEITWFKDFLPVDTT--SNGRIKQLRSGALQIENSEESDQ--GKYECVA   57 (74)
T ss_pred             CEEEEEEeEec---CCEEEEEECCEECccC--CCCCEEEcCCcEEEECCCChhhC--EEEEEEE
Confidence            68999864221   2367999998665321  36899999999999999987665  3444544

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>smart00409 IG Immunoglobulin

Probab=97.12  E-value=0.0013  Score=38.12  Aligned_cols=63  Identities=14%  Similarity=0.211  Sum_probs=46.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccC-CeeeecCcCCCceEEEccC---ccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQD-DVNIYLNTDTGGKYVVLSS---GDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~D-d~~I~p~~~~dgKY~vlps---GeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .+..|.++.|.|.+..+   -....+|.++ ...+.+    ++++...+.   +.|.|++++..|+.  .-.|.+.
T Consensus         5 ~~~~g~~~~l~C~~~~~---~~~~~~W~~~~~~~v~~----~~~~~~~~~~~~~~l~i~~~~~~d~G--~Y~C~v~   71 (86)
T smart00409        5 TVKEGESVTLSCEVSGS---PPPEVTWYKQGGKLLAE----SGRFSVSRSGSNSTLTISNVTPEDSG--TYTCAAT   71 (86)
T ss_pred             EEeCCCeEEEEEEEccC---CCCeEEEEECCCEEcCC----CCcEEEEEcCCeeEEEEEeeccccCe--EEEEEEE
Confidence            56789999999998865   3456778887 555543    567777665   68999999988873  4556554

>smart00410 IG_like Immunoglobulin like

Probab=97.12  E-value=0.0013  Score=38.12  Aligned_cols=63  Identities=14%  Similarity=0.211  Sum_probs=46.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccC-CeeeecCcCCCceEEEccC---ccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQD-DVNIYLNTDTGGKYVVLSS---GDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~D-d~~I~p~~~~dgKY~vlps---GeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .+..|.++.|.|.+..+   -....+|.++ ...+.+    ++++...+.   +.|.|++++..|+.  .-.|.+.
T Consensus         5 ~~~~g~~~~l~C~~~~~---~~~~~~W~~~~~~~v~~----~~~~~~~~~~~~~~l~i~~~~~~d~G--~Y~C~v~   71 (86)
T smart00410        5 TVKEGESVTLSCEVSGS---PPPEVTWYKQGGKLLAE----SGRFSVSRSGSNSTLTISNVTPEDSG--TYTCAAT   71 (86)
T ss_pred             EEeCCCeEEEEEEEccC---CCCeEEEEECCCEEcCC----CCcEEEEEcCCeeEEEEEeeccccCe--EEEEEEE
Confidence            56789999999998865   3456778887 555543    567777665   68999999988873  4556554

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=97.06  E-value=0.00076  Score=42.68  Aligned_cols=54  Identities=13%  Similarity=0.086  Sum_probs=39.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      .+..|.+|.|.|.+...-.   -..+|.+++..+.+    .+++. ++.|.|.|.+++.+|.
T Consensus        12 ~~~~g~~v~l~C~~~g~P~---p~v~W~k~~~~~~~----~~~~~-~~~~~L~i~~v~~~D~   65 (88)
T cd04968          12 YALKGQNVTLECFALGNPV---PQIKWRKVDGSMPS----SAEIS-MSGAVLKIPNIQFEDE   65 (88)
T ss_pred             EEeCCCcEEEEEEeeEeCC---CEEEEEECCCcCCC----ccEEE-EeCCEEEECCCCcccC
Confidence            5668999999999753322   35789998865544    23333 6889999999998874

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=97.05  E-value=0.0009  Score=41.21  Aligned_cols=56  Identities=7%  Similarity=0.207  Sum_probs=40.6

Q ss_pred             eEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          24 TAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        24 tAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .++|.|.+-..-.   -..+|++++..+.|    +.+|.+.+.|.|.|.+++.+|.-  .-.|..
T Consensus         1 ~v~l~C~~~G~P~---p~v~W~k~g~~~~~----~~~~~~~~~~~l~i~~v~~~D~G--~Y~C~A   56 (71)
T cd05723           1 DVIFECEVTGKPT---PTVKWVKNGDMVIP----SDYFKIVKEHNLQVLGLVKSDEG--FYQCIA   56 (71)
T ss_pred             CEEEEEEEEEeCC---CEEEEEECCeECCC----CCCEEEEecCCEEEEcCCcccCE--EEEEEE
Confidence            3789998743322   34699999976655    46888899999999999887743  345544

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=97.04  E-value=0.0025  Score=38.82  Aligned_cols=58  Identities=22%  Similarity=0.293  Sum_probs=40.8

Q ss_pred             cCeEEEEccCCCCccceeEEeEEccCC-eeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          22 GNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd-~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      |.++.|.|.+...-.   ....|..++ ..+ +   .+.++.+.++|.|.|.++..+|.  -+-.|..
T Consensus         1 G~~~~l~C~~~g~P~---p~v~W~~~~~~~~-~---~~~~~~~~~~~~L~i~~~~~~D~--G~Y~C~a   59 (74)
T cd05764           1 GQRATLRCKARGDPE---PAIHWISPDGKLI-S---NSSRTLVYDNGTLDILITTVKDT--GSFTCIA   59 (74)
T ss_pred             CCeEEEEEEccCcCC---CEEEEEeCCCEEe-c---CCCeEEEecCCEEEEEECChhhC--EEEEEEE
Confidence            678999999754332   267999755 544 3   25789999999999999876553  3455544

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=97.03  E-value=0.0011  Score=42.00  Aligned_cols=70  Identities=11%  Similarity=0.123  Sum_probs=47.1

Q ss_pred             EeeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCc-CCCceEEEccC---ccEEEEeEeeecCCcceeeeee
Q psy5692          13 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT-DTGGKYVVLSS---GDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        13 V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~-~~dgKY~vlps---GeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      ..+. -+..|.+|.|.|.+..+-..   ..+|.+++..+.... ..+|+|.+.++   +.|.|++++.+|.  ..-.|..
T Consensus         8 ~~~~-~~~~g~~v~l~C~~~g~p~p---~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~--G~Y~C~a   81 (96)
T cd05732           8 LENQ-TAVELEQITLTCEAEGDPIP---EITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDA--GRYDCEA   81 (96)
T ss_pred             cCce-eEecCCcEEEEEEEeEcCCC---cEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcC--EEeEEEE
Confidence            3455 77899999999998644222   467999885543321 13678888653   5899999987765  3445543

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=96.99  E-value=0.0021  Score=39.88  Aligned_cols=66  Identities=18%  Similarity=0.229  Sum_probs=44.7

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEE-ccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV-LSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~v-lpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      -|-.|+++.|.|.+..+-.   ...+|++++..|-+.... ++|.. ...+.|.|.+++.+|.  ..-.|.++
T Consensus         5 ~v~~G~~~~L~C~~~g~P~---p~i~W~k~g~~l~~~~~~-~~~~~~~~~~~l~i~~~~~~D~--G~Y~C~a~   71 (85)
T cd05857           5 AVPAANTVKFRCPAAGNPT---PTMRWLKNGKEFKQEHRI-GGYKVRNQHWSLIMESVVPSDK--GNYTCVVE   71 (85)
T ss_pred             EcCCCCEEEEEEEcCCCCC---CEEEEEECCEECCCCCce-eeeEEeCCceEEEEccCCcccC--EEEEEEEE
Confidence            4668999999999875532   357999999776543221 23333 3466799999988775  45566654

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>KOG4221|consensus

Probab=96.97  E-value=0.00078  Score=63.20  Aligned_cols=65  Identities=18%  Similarity=0.414  Sum_probs=54.6

Q ss_pred             ceEEEEeeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCC
Q psy5692           8 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGN   80 (98)
Q Consensus         8 ~Yev~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n   80 (98)
                      .+..+.++. .+..|++|.|+|.|-+   +=+...-|.+++..| |   .|+|+.+||||-|.|.++|.-|+-
T Consensus       142 ~f~~~~~~~-t~~~g~ta~f~c~vn~---e~~p~i~w~kn~~pl-~---~~~r~i~lpsG~L~I~~~qp~d~g  206 (1381)
T KOG4221|consen  142 DFALQPEST-TLLYGQTALFSCEVNA---EPVPTIMWLKNDQPL-P---LDSRVIVLPSGALEISGLQPSDTG  206 (1381)
T ss_pred             ccccCccce-eEecCCcEEEEEEEcC---ccCceeEEecccccc-c---CCCcEEEcCCCcEEecccccCCCc
Confidence            477788888 9999999999999864   556678899999754 3   467999999999999999987763

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=96.97  E-value=0.0012  Score=41.99  Aligned_cols=64  Identities=11%  Similarity=0.183  Sum_probs=46.3

Q ss_pred             eeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          14 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        14 ~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+. .+..|.+|.|.|.+..+-.   ...+|.+++..|.+    ++++.+ .+|.|.|.+++.+|..  .-+|..
T Consensus         7 ~~~-~~~~G~~~~l~C~~~g~p~---p~v~W~k~g~~~~~----~~~~~~-~~~~L~i~~~~~~D~G--~Y~C~a   70 (85)
T cd05728           7 SDT-EADIGSSLRWECKASGNPR---PAYRWLKNGQPLAS----ENRIEV-EAGDLRITKLSLSDSG--MYQCVA   70 (85)
T ss_pred             Ccc-EEcCCCcEEEEEEeeEeCC---CEEEEEECCEECCC----CCeEEE-eCCEEEEeeCCHHHCE--EEEEEE
Confidence            444 6779999999999854432   25889999876533    457665 5889999999988753  455544

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=96.95  E-value=0.0013  Score=40.71  Aligned_cols=61  Identities=23%  Similarity=0.274  Sum_probs=42.3

Q ss_pred             cCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          22 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      |.++.|.|.+...-.   -..+|..++..|.+. ..+++|. ..+|.|.|++++.+|.  .+-.|...
T Consensus         1 G~~v~l~C~~~G~P~---p~i~W~k~g~~i~~~-~~~~~~~-~~~~~L~I~~~~~~D~--G~Y~C~a~   61 (76)
T cd05867           1 GETARLDCQVEGIPT---PNITWSINGAPIEGT-DPDPRRH-VSSGALILTDVQPSDT--AVYQCEAR   61 (76)
T ss_pred             CCeEEEEEEeeEeCC---CeEEEEECCEECCCC-CCCceEE-eeCCEEEECCCChhhC--EEEEEEEE
Confidence            789999999753322   256999998766542 2244665 4789999999998875  35556543

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=96.95  E-value=0.0018  Score=42.71  Aligned_cols=66  Identities=14%  Similarity=0.183  Sum_probs=43.5

Q ss_pred             ceeecCeEEEEccCCCC----ccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSY----MSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~----V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      +|..|+++.|+|.+...    -.+.  ...|.+++..+......+.|+.. ..|.|.|.+++.+|.-  +=.|.+
T Consensus        10 ~v~~G~~~~L~C~~~g~~~~~~p~~--~v~Wyk~~~~~~~~~~~~~r~~~-~~~~L~I~~~~~~DsG--~Y~C~~   79 (94)
T cd05756          10 YVLEGEPVVIKCPLFYSYIAQSPGL--NLTWYKSDGKTPIPTEERSRMHQ-QKDLLWFLPAALEDSG--LYTCVV   79 (94)
T ss_pred             EEecCCCeEEECCCCCcccccCCCc--eEEEEEcCCCCcccccccceeee-cCCeEEEccCCcccCe--EEEEEE
Confidence            78899999999986642    1233  27899998443211223456544 4688999999988863  455544

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=96.90  E-value=0.0018  Score=42.49  Aligned_cols=66  Identities=14%  Similarity=0.158  Sum_probs=42.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC--eeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeeehH
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVEE   90 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd--~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~~   90 (98)
                      +++.|++|.|.|. ++.  ... ..+|.+++  .........+++|... .|.|.|++++.+|.  .+-.|...+
T Consensus         7 ~~~eG~~v~L~C~-~~~--p~p-~v~Wykq~~g~~~~~~~~~~~r~~~~-~~~L~I~~~~~~Ds--G~Y~C~a~~   74 (91)
T cd05871           7 YGVENNSTFLECL-PKS--PQA-SVKWLFQRGGDQRKEEVKTEERLIHT-ERGLLLRSLQRSDA--GVYTCTAVE   74 (91)
T ss_pred             EEecCCcEEEEEE-CCC--CCc-eEEEEEECCCCCccccccccccEEEe-cCeEEEeeCChhHC--EEEEEEEEc
Confidence            5789999999999 442  333 35898754  1111111135788764 46699999988775  666776653

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=96.88  E-value=0.01  Score=36.90  Aligned_cols=69  Identities=19%  Similarity=0.297  Sum_probs=46.7

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecC-cCCCceEEEccCccEEEEeEee---ecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-TDTGGKYVVLSSGDLYVQIRLS---ITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~-~~~dgKY~vlpsGeL~Ir~v~~---~~~n~~~~~~~~~   89 (98)
                      .+..|.++.|.|.+..+-..   ...|++++..+.+. .+.+.++.++++|.|++..+..   ....+..-.|...
T Consensus        12 ~v~~G~~~~l~C~~~g~P~p---~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~   84 (100)
T cd07693          12 IVSKGDPATLNCKAEGRPTP---TIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAH   84 (100)
T ss_pred             EEcCCCeEEEEeeCCcCCCC---EEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEE
Confidence            56789999999998765433   56899999766442 2235567788999988766532   2344556666554

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=96.87  E-value=0.0011  Score=41.67  Aligned_cols=59  Identities=12%  Similarity=0.253  Sum_probs=42.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMK   87 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~   87 (98)
                      .+..|-++.|.|.+...    ..-..|..++..|.+    +++|.+. .+.|.|.+++.+|.  ..-.|.
T Consensus         5 ~~~~G~~v~l~C~~~~~----~~~v~W~k~g~~l~~----~~~~~~~-~~~L~I~~~~~~Ds--G~Y~C~   63 (79)
T cd04973           5 SAHPGDLLQLRCRLRDD----VQSINWTKDGVQLGE----NNRTRIT-GEEVQIKDAVPRDS--GLYACV   63 (79)
T ss_pred             EecCCCCEEEEEEecCC----CceEEEeeCCcCCCC----CceEEEe-CCEEEECCCChhhC--EEEEEE
Confidence            46689999999998753    235789999866633    5677764 56799999988764  444444

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=96.87  E-value=0.0017  Score=40.89  Aligned_cols=54  Identities=22%  Similarity=0.359  Sum_probs=36.0

Q ss_pred             eEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceE----EEccCccEEEEeEeeecC
Q psy5692          24 TAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKY----VVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        24 tAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY----~vlpsGeL~Ir~v~~~~~   79 (98)
                      ++.|.|.+...-.--+ .+.|..++..|... ..+++|    ....+|.|.|++++..|.
T Consensus         2 ~~~L~C~~~g~P~p~i-~~~W~~~g~~i~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~   59 (85)
T cd04970           2 SITLQCHASHDPTLDL-TFTWSFNGVPIDFD-KDGGHYRRVGGKDSNGDLMIRNAQLKHA   59 (85)
T ss_pred             cEEEEEEEecCCCCCe-EEEEEECCeEeecc-CCCccEEEEecccccceEEEccCCHHhC
Confidence            5899999864433223 36899998766432 223443    334689999999998765

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=96.83  E-value=0.0025  Score=41.07  Aligned_cols=63  Identities=21%  Similarity=0.189  Sum_probs=45.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc---CccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS---SGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp---sGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .|..|.++.|.|.+..+   =.-..+|++++..|.+   .++||.+..   .+.|.|++++.+|.  ..-.|..
T Consensus         6 ~v~~G~~v~l~c~~~G~---P~P~v~W~k~~~~i~~---~~~r~~~~~~~~~~~L~I~~~~~~D~--G~Y~c~a   71 (86)
T cd05894           6 VVVAGNKLRLDVPISGE---PAPTVTWSRGDKAFTE---TEGRVRVESYKDLSSFVIEGAEREDE--GVYTITV   71 (86)
T ss_pred             EEEcCCEEEEEeeEeec---CCCeEEEEECCEECcc---CCCeEEEEEcCCeEEEEECCCccCcC--EEEEEEE
Confidence            56799999999987433   2347789999977754   256887764   36799999998885  3444543

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.82  E-value=0.0016  Score=40.43  Aligned_cols=64  Identities=13%  Similarity=0.250  Sum_probs=47.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEc---cCccEEEEeEeeecCCcceeeeeehH
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL---SSGDLYVQIRLSITGNLSVKKMKVEE   90 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vl---psGeL~Ir~v~~~~~n~~~~~~~~~~   90 (98)
                      .+..|.++.|.|.+... ..  ....|.+++..|..    +++|.+.   .+..|.|.+++..|.  ..-+|.++.
T Consensus        11 ~v~~G~~~~l~c~~~~~-p~--~~v~W~~~~~~l~~----~~~~~~~~~~~~~~L~I~~v~~~D~--G~Y~C~~~n   77 (90)
T PF07679_consen   11 TVKEGESVTLECEVSGN-PP--PTVTWYKNGRPLTS----SQRYQIESDGGSSSLTIKNVTREDA--GTYTCVASN   77 (90)
T ss_dssp             EEETTSEEEEEEEEEES-SS--SEEEEEETTEEEES----SSSEEEEEETTEEEEEESSESGGGS--EEEEEEEEE
T ss_pred             EEeCCCEEEEEEEEEeC-CC--Ccccccccccceee----eeeeeeecccceeEEccCCCChhhC--EEEEEEEEE
Confidence            67789999999998644 12  25569999987765    5677665   477899999998776  466666643

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=96.82  E-value=0.0017  Score=39.36  Aligned_cols=54  Identities=11%  Similarity=0.202  Sum_probs=38.9

Q ss_pred             EEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          25 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      |.|.|.+...-.-   ...|.+++..+ |    .+++.+.+++.|.|++++.+|.-  .-.|..
T Consensus         1 v~l~C~~~g~P~p---~v~W~k~~~~~-~----~~~~~~~~~~~L~I~~v~~~D~G--~Y~C~a   54 (69)
T cd05725           1 VEFQCEVGGDPVP---TVLWRKEDGEL-P----KGRAEILDDKSLKIRNVTAGDEG--SYTCEA   54 (69)
T ss_pred             CEEEEECccCCCC---EEEEEECCccC-C----CCcEEEeeCCEEEECcCChhHCE--EEEEEE
Confidence            5799998544332   47999997544 2    57899999999999999988753  344443

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=96.82  E-value=0.0027  Score=40.86  Aligned_cols=68  Identities=10%  Similarity=0.061  Sum_probs=46.4

Q ss_pred             EEEEeeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          10 EINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        10 ev~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+...+. .+..|.++.|.|.+...-.-   ..+|.+++..+.+    +.++.+ ..+.|.|++++.+|.-  .-.|..
T Consensus         5 ~~~~~~~-~~~~G~~v~l~C~~~G~P~P---~v~W~k~~~~~~~----~~~~~~-~~~~L~I~~v~~~D~G--~Y~C~A   72 (88)
T cd05851           5 NVKFKDT-YALKGQNVTLECFALGNPVP---VIRWRKILEPMPA----TAEISM-SGAVLKIFNIQPEDEG--TYECEA   72 (88)
T ss_pred             EEccccE-EEeCCCcEEEEEEecccCCC---EEEEEECCcCCCC----CCEEec-CCCEEEECcCChhhCE--EEEEEE
Confidence            3455566 78899999999998544333   5899999855422    334443 4668999999887764  344543

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=96.69  E-value=0.007  Score=33.54  Aligned_cols=58  Identities=12%  Similarity=0.142  Sum_probs=39.2

Q ss_pred             ecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          21 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        21 rGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .|.++.|.|..+++...   ..+|.++...+.     +......+++.|.|.+++..|.  ..-.|.+
T Consensus         1 ~g~~~~l~C~~~~~~~~---~v~W~~~~~~~~-----~~~~~~~~~~~L~i~~~~~~d~--G~Y~C~~   58 (63)
T smart00408        1 EGQSVTLTCPAEGDPVP---NITWLKDGKPLP-----ESNRLSASGSTLTIKSVSLEDS--GEYTCVA   58 (63)
T ss_pred             CCceEEEEeeCccCCCC---eEEEEECCEECC-----CCCEEecCCcEEEEeeCCcccC--EEEEEEE
Confidence            38899999996544332   468999875553     2344455788999999987664  3455544

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=96.65  E-value=0.0048  Score=39.98  Aligned_cols=62  Identities=13%  Similarity=0.203  Sum_probs=42.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-eeeecCcCCCceEEEccCc----cEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYVVLSSG----DLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-~~I~p~~~~dgKY~vlpsG----eL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .+..|.++.|.|.+..+ .   ...+|...+ ..+.+    .+++.+..+|    .|.|++++.+|.  -.-+|...
T Consensus        11 ~v~~G~~~~l~C~~~G~-p---~~i~W~~~~~~~~~~----~~~~~~~~~~~~~~~L~I~~v~~~D~--G~Y~C~A~   77 (92)
T cd04977          11 EISVGESKFFLCQVIGE-P---KDISWFSPNGEKLVT----QQQISVVQNDDVRSTLTIYNANIEDA--GIYKCVAT   77 (92)
T ss_pred             EECCCCeEEEEEEeEee-C---CeEEEECCCCCEecc----CCCEEEEeCCCCEEEEEEecCCcccC--EEEEEEEE
Confidence            57789999999998655 2   257899744 55544    3455555444    799999998875  35666554

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=96.65  E-value=0.0046  Score=41.75  Aligned_cols=59  Identities=12%  Similarity=0.289  Sum_probs=40.7

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-eeeecCc---CCCceEEEcc-Ccc---EEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNT---DTGGKYVVLS-SGD---LYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-~~I~p~~---~~dgKY~vlp-sGe---L~Ir~v~~~~~   79 (98)
                      -|..|.+|.|.|.+.+.-..+   ..|..-+ ..|+-..   -.+.||.+.. +|.   |.|++++.+|+
T Consensus         8 tv~~G~ta~L~C~v~~~~~~~---v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~   74 (95)
T cd05881           8 TVVEGEVAIISCRVKNNDDSV---IQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDE   74 (95)
T ss_pred             EEcCCCcEEEEEEEccCCccE---EEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccC
Confidence            456899999999998665333   3576555 4443211   1478998875 554   89999999886

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=96.63  E-value=0.0076  Score=36.82  Aligned_cols=62  Identities=18%  Similarity=0.256  Sum_probs=41.2

Q ss_pred             cCeEEEEccCCCCccceeEEeEEccCC----eeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          22 GNTAVLRCQIPSYMSEYIIVTSWIQDD----VNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd----~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      |.++.|.|.+...-..   ..+|.++.    ..+.......+++.+...|.|.|.+++.+|.  .+-.|..
T Consensus         1 G~~v~l~C~~~g~P~p---~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~--G~Y~C~a   66 (81)
T cd05765           1 GETASFHCDVTGRPPP---EITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDA--GLYTCTA   66 (81)
T ss_pred             CCcEEEEeeccccCCC---cEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccC--EEEEEEE
Confidence            7899999998654433   46898863    1121212234678888889999999998874  3444543

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=96.63  E-value=0.0031  Score=40.50  Aligned_cols=62  Identities=23%  Similarity=0.325  Sum_probs=42.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccC-c---cEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS-G---DLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlps-G---eL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+..|.++.|.|.+..+-.-   -.+|++++..+.+    +++|.+..+ |   .|.|.+++.+|.-  .-.|..
T Consensus        12 ~v~~G~~v~L~C~v~G~P~p---~v~W~k~g~~l~~----~~~~~~~~~~~~~~~L~I~~v~~~D~G--~Y~C~a   77 (92)
T cd05737          12 TIMEGKTLNLTCTVFGDPDP---EVSWLKNDQALAL----SDHYNVKVEQGKYASLTIKGVSSEDSG--KYGIVV   77 (92)
T ss_pred             EEeCCCcEEEEEEEEecCCC---eEEEEECCEECcc----CCCEEEEEcCCCEEEEEEccCChhhCE--EEEEEE
Confidence            35689999999997544322   3679999876644    456766533 3   6999999988753  344544

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=96.61  E-value=0.0028  Score=39.44  Aligned_cols=60  Identities=20%  Similarity=0.252  Sum_probs=40.1

Q ss_pred             EEEEccCCCCccceeEEeEEccCCeeeec----CcCCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          25 AVLRCQIPSYMSEYIIVTSWIQDDVNIYL----NTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I~p----~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      ++|.|.+..+-..   ..+|.+++....|    ....++|+.+.++|.|+|++++.+|  +..-.|...
T Consensus         1 v~l~C~~~G~P~P---~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D--~G~Y~C~a~   64 (79)
T cd05734           1 VTLNCSAEGYPPP---TIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEED--SGYYLCKVS   64 (79)
T ss_pred             CEeEeeCeEeCCC---EEEEEECCCccccccccccccCCCEEEecCCeEEECcCCccc--CEEEEEEEE
Confidence            5799987644333   4689987522212    1125789999999999999998765  345566543

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=96.59  E-value=0.0062  Score=40.01  Aligned_cols=58  Identities=17%  Similarity=0.173  Sum_probs=41.6

Q ss_pred             eecCeEEEEccCCCCccceeEEeEEccCC-eee-ecC-----------cCCCceEEEcc-CccEEEEeEeeecC
Q psy5692          20 ILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNI-YLN-----------TDTGGKYVVLS-SGDLYVQIRLSITG   79 (98)
Q Consensus        20 irGNtAVLkC~IPs~V~d~V~V~SW~~Dd-~~I-~p~-----------~~~dgKY~vlp-sGeL~Ir~v~~~~~   79 (98)
                      +.|.+++|.|.++.  .+-....+|.+.. ..+ .+.           ....+|+.+.+ ++.|.|++++.+|.
T Consensus         2 ~~G~sVtL~c~~~~--~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~Ds   73 (97)
T cd05775           2 ILGGSVTLPLNIPD--GTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDA   73 (97)
T ss_pred             ccCCeEEEeCCCCC--CcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHC
Confidence            47999999999874  3566789999865 222 221           12236788877 59999999998885

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=96.56  E-value=0.005  Score=39.30  Aligned_cols=62  Identities=16%  Similarity=0.250  Sum_probs=43.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCc-cEEEEeEeeecCCcceeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG-DLYVQIRLSITGNLSVKKMK   87 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG-eL~Ir~v~~~~~n~~~~~~~   87 (98)
                      .+..|.+|.|.|.+..+-.   ....|.+++..+.+   .+.+|....+| .|.|.++..+|.  ..-.|.
T Consensus        14 ~~~~G~~v~L~C~~~g~P~---p~v~W~k~g~~~~~---~~~~~~~~~~~~~L~I~~v~~~D~--G~Y~C~   76 (95)
T cd05730          14 TANLGQSVTLACDADGFPE---PTMTWTKDGEPIES---GEEKYSFNEDGSEMTILDVDKLDE--AEYTCI   76 (95)
T ss_pred             EEeCCCCEEEEEeccEeCC---CEEEEEECCEECcC---CCCEEEEeCCCCEEEECCCChhhC--EEEEEE
Confidence            3568999999999865433   24679999876644   24688777665 599999987773  344443

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=96.54  E-value=0.0065  Score=38.95  Aligned_cols=68  Identities=13%  Similarity=0.247  Sum_probs=45.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-eeeecCc---CCCceEEEcc----CccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNT---DTGGKYVVLS----SGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-~~I~p~~---~~dgKY~vlp----sGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .|..|.+|.|.|.+...  .. ....|..-+ ..|+...   ..++||.+..    ++.|.|++++.+|.  ..=.|.+.
T Consensus         8 ~v~~G~~v~L~C~~~~~--~~-~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~Ds--G~Y~C~~~   82 (95)
T cd05717           8 TVVEGGTATLKCRVKNN--DN-SSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDE--GRYTCSLY   82 (95)
T ss_pred             EEcCCCCEEEEEEECCC--CC-ceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccC--EEEEEEEe
Confidence            56789999999997543  22 357797544 4443221   1357998853    35699999999886  56667654


Q ss_pred             H
Q psy5692          90 E   90 (98)
Q Consensus        90 ~   90 (98)
                      .
T Consensus        83 ~   83 (95)
T cd05717          83 T   83 (95)
T ss_pred             c
Confidence            3

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=96.50  E-value=0.0039  Score=40.71  Aligned_cols=60  Identities=7%  Similarity=0.045  Sum_probs=44.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc-CccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS-SGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp-sGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      -|..|.++.|.|.+...    ....+|.+++..+.+     +++.+.+ .+.|.|.+++.+|.  ..-.|..
T Consensus        14 ~v~~g~~v~l~C~a~g~----~p~i~W~kng~~l~~-----~~~~~~~~~~~L~I~~v~~~D~--G~Y~C~a   74 (91)
T cd05740          14 PPEDNQPVTLTCEAEGQ----ATYIWWVNNGSLLVP-----PRLQLSNDNRTLTFNNVTRSDT--GHYQCEA   74 (91)
T ss_pred             ccccCCcEEEEEEeCCC----CCEEEEEECCEECCC-----CCEEEeCCCCEEEECcCChhhC--EEEEEEE
Confidence            45679999999998755    455689999866533     5676664 47999999988775  5555554

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=96.49  E-value=0.0052  Score=41.71  Aligned_cols=57  Identities=18%  Similarity=0.269  Sum_probs=39.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccC-------ccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS-------GDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlps-------GeL~Ir~v~~~~   78 (98)
                      ++.+|-+|.|.|.+-|+-.--..+|+|...  .|.++  ..+||.+..+       =+|.|+++...|
T Consensus        12 ~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~--~i~~~--~~~r~~I~~~~~~~g~~S~L~I~~~~~~d   75 (98)
T cd05898          12 YAVRGERGKVKCFIGSTPPPDRIAWAWKEN--VLESG--TSERYTVERTSTGSGVLSTLTINNIMEAD   75 (98)
T ss_pred             EEeCCCcEEEEEEEccCCCCcEEEEEEccc--cccCC--CCCCEEEEEEccCCCcEEEEEECCCcccc
Confidence            788999999999996666655567788765  33232  2579988532       368898885433

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=96.46  E-value=0.0064  Score=36.84  Aligned_cols=61  Identities=16%  Similarity=0.178  Sum_probs=41.4

Q ss_pred             cCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          22 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      |.++.|.|.+...-.   -..+|..++..|.+...  ........|.|.|++++.+|.  ..-.|...
T Consensus         1 G~~~~l~C~~~g~P~---p~i~W~~~g~~~~~~~~--~~~~~~~~~~L~i~~v~~~D~--G~Y~C~A~   61 (76)
T cd04978           1 GETGRLDCEAEGIPQ---PTITWRLNGVPIEELPP--DPRRRVDGGTLILSNVQPNDT--AVYQCNAS   61 (76)
T ss_pred             CCeEEEEEEceeeCC---CEEEEEECCEECCCCCC--cceEEccCCEEEECCCChhhC--EEEEEEEE
Confidence            789999998753322   24789999876654221  134556789999999998765  45666543

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=96.43  E-value=0.0044  Score=41.00  Aligned_cols=57  Identities=11%  Similarity=0.068  Sum_probs=40.3

Q ss_pred             ceeecCeEEEEccCCCCccc--eeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSE--YIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d--~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      .+..|.++.|+|.....-.+  ----..|.+|...|-.    +.+. +...|.|.|++++.+|.
T Consensus         6 ~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~----~~~~-~~~~~~L~I~~v~~~Ds   64 (92)
T cd05757           6 ILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEG----DRKR-FVKGSKLLIQNVTEEDA   64 (92)
T ss_pred             EEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCC----CccE-EecCCEEEEeeCChhhC
Confidence            67789999999986533222  1225689999976632    2333 33899999999998885

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=96.36  E-value=0.0088  Score=36.69  Aligned_cols=58  Identities=12%  Similarity=0.143  Sum_probs=38.9

Q ss_pred             EEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc-CccEEEEeEeeecCCcceeeeee
Q psy5692          25 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS-SGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp-sGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      |.|.|.+..+-.-   ..+|.+++..+.|. ..+.++.+.+ .|.|.|.+++.+|.  ..-.|..
T Consensus         1 a~l~C~~~G~P~P---~v~W~k~~~~~~~~-~~~~~~~~~~~~~~L~I~~~~~~D~--G~Y~C~A   59 (75)
T cd05763           1 ARLECAATGHPTP---QIAWQKDGGTDFPA-ARERRMHVMPEDDVFFIVDVKIEDT--GVYSCTA   59 (75)
T ss_pred             CEeEeecccccCC---EEEEEeCCCccCCc-ccccceEEecCCCEEEEeeCCcccC--EEEEEEE
Confidence            6899987543332   47999998544442 2356888876 47899999998874  3445543

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=96.36  E-value=0.004  Score=38.83  Aligned_cols=58  Identities=12%  Similarity=0.180  Sum_probs=39.9

Q ss_pred             cCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccC---ccEEEEeEeeecCCcceeeeee
Q psy5692          22 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS---GDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlps---GeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      |.++.|.|.+..+-.   -...|..++..+.    .+.||.+..+   |.|.|+++..+|.  ..-.|..
T Consensus         1 G~~v~l~C~~~g~P~---p~v~W~~~~~~~~----~~~~~~~~~~~~~~~L~I~~v~~~D~--G~Y~C~a   61 (78)
T cd05743           1 GETVEFTCVATGVPT---PIINWRLNWGHVP----DSARVSITSEGGYGTLTIRDVKESDQ--GAYTCEA   61 (78)
T ss_pred             CCEEEEEEEEEEecC---CEEEEEECCeECC----CCCCEEEEECCCEEEEEECCCChHHC--EEEEEEE
Confidence            789999999844332   2567999886552    2467777653   6799999998884  2455544

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=96.31  E-value=0.007  Score=39.91  Aligned_cols=55  Identities=18%  Similarity=0.240  Sum_probs=41.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc---CccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS---SGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp---sGeL~Ir~v~~~~~   79 (98)
                      .|..|.++.|.|.+..   +---...|.+|+..|-+    +.+|.+..   ++.|.|++++.+|.
T Consensus        11 ~v~~G~~v~l~C~~~G---~p~p~v~W~kdg~~l~~----~~~~~~~~~~~~s~L~I~~~~~~D~   68 (98)
T cd05762          11 KVRAGESVELFCKVTG---TQPITCTWMKFRKQIQE----GEGIKIENTENSSKLTITEGQQEHC   68 (98)
T ss_pred             EEECCCEEEEEEEEcc---cCCCceEEEECCEEecC----CCcEEEEecCCeeEEEECCCChhhC
Confidence            6779999999999853   33345899999977743    45677663   67799999988876

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=96.26  E-value=0.01  Score=38.57  Aligned_cols=72  Identities=13%  Similarity=0.172  Sum_probs=43.1

Q ss_pred             eeceEEEEeeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEee-ecCCccee
Q psy5692           6 KQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLS-ITGNLSVK   84 (98)
Q Consensus         6 ~Q~Yev~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~-~~~n~~~~   84 (98)
                      .||-.+.+...   ..|++|.|.|.+...-.   ...+|.+++..|...  .+.+|. +.+|.|+|.++.. .|  .-.-
T Consensus         6 ~~P~~~~~~~~---~~g~~v~l~C~a~g~P~---p~i~W~~~g~~l~~~--~~~~~~-~~~g~L~I~~~~~~~D--~G~Y   74 (94)
T cd05850           6 EQPSSLLFPEG---SPEEKVTLGCRARASPP---ATYRWKMNGTEIKFA--PESRYT-LVAGNLVINNPQKARD--AGSY   74 (94)
T ss_pred             ECCCCEEecCC---CCCCeEEEEeEceeCCC---CEEEEEECCEECccC--CCceEE-EECCeEEEccCCccCc--CEEE
Confidence            34545544321   24789999999843322   257999998766321  234554 4689999988643 33  3334


Q ss_pred             eeee
Q psy5692          85 KMKV   88 (98)
Q Consensus        85 ~~~~   88 (98)
                      +|..
T Consensus        75 ~C~A   78 (94)
T cd05850          75 QCLA   78 (94)
T ss_pred             EEEE
Confidence            5543

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=96.24  E-value=0.012  Score=38.58  Aligned_cols=59  Identities=15%  Similarity=0.277  Sum_probs=38.8

Q ss_pred             ecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEe-eecCCcceeeeee
Q psy5692          21 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRL-SITGNLSVKKMKV   88 (98)
Q Consensus        21 rGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~-~~~~n~~~~~~~~   88 (98)
                      .|+++.|.|.+-..-   .-..+|.+++..|.+   .+++|. +++|.|.|+++. .+|.  -.-.|..
T Consensus        18 ~~~~v~l~C~a~G~P---~P~i~W~k~~~~i~~---~~~~~~-~~~g~L~I~~~~~~~D~--G~Y~C~A   77 (93)
T cd05849          18 TEGKVSVNCRARANP---FPIYKWRKNNLDIDL---TNDRYS-MVGGNLVINNPDKYKDA--GRYVCIV   77 (93)
T ss_pred             cCCeEEEeCcCccCC---CCEEEEEECCEEccC---CCCeEE-EECCEEEECcCCcCCCC--EEEEEEE
Confidence            367899999974332   226899999866633   245774 578999999874 3443  3344543

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=96.22  E-value=0.0031  Score=37.09  Aligned_cols=52  Identities=12%  Similarity=0.183  Sum_probs=33.4

Q ss_pred             cCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCcc-----EEEEeEeeecC
Q psy5692          22 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD-----LYVQIRLSITG   79 (98)
Q Consensus        22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGe-----L~Ir~v~~~~~   79 (98)
                      |.++.|.|.+  .-...-.-.+|.+++....+    .......+++.     |+|++++.+|+
T Consensus         1 G~~v~L~C~~--~~~~~~~~~~W~~~~~~~~~----~~~~~~~~~~~~~~~~L~i~~v~~~d~   57 (64)
T PF00047_consen    1 GSSVTLTCSV--SSGPPPTTVTWSKNGQSLPE----GSTTNRSTNSVSSTSRLTISNVTPEDS   57 (64)
T ss_dssp             TSEEEEEEEE--EESSSTSEEEEEETTTTTSE----EEEEEEEETTTEEEEEEEESSCTGGGT
T ss_pred             CCeEEEEeec--CCCCCCcEEEEEECCccccC----cceeEeecccceeeeEEEEccCCHHHC
Confidence            8899999998  11234446789999833211    12333334333     99999998875

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=96.21  E-value=0.014  Score=37.56  Aligned_cols=66  Identities=18%  Similarity=0.297  Sum_probs=41.3

Q ss_pred             cCeEEEEccCCCCccceeEEeEEccCC--ee--eecCc---------CCCceEEEcc------CccEEEEeEeeecCCcc
Q psy5692          22 GNTAVLRCQIPSYMSEYIIVTSWIQDD--VN--IYLNT---------DTGGKYVVLS------SGDLYVQIRLSITGNLS   82 (98)
Q Consensus        22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd--~~--I~p~~---------~~dgKY~vlp------sGeL~Ir~v~~~~~n~~   82 (98)
                      |.+|+|.|.+++....-..-.+|.+.+  ..  +|...         +..||..+..      +..|.|++++..|..  
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G--   78 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEG--   78 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCE--
Confidence            788999999854433334457798876  22  22211         1236887642      246999999999873  


Q ss_pred             eeeeeeh
Q psy5692          83 VKKMKVE   89 (98)
Q Consensus        83 ~~~~~~~   89 (98)
                      .=.|.+.
T Consensus        79 ~Y~C~v~   85 (100)
T cd05713          79 LYTCFFQ   85 (100)
T ss_pred             EEEEEEe
Confidence            4555554

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=96.18  E-value=0.008  Score=36.84  Aligned_cols=58  Identities=14%  Similarity=0.243  Sum_probs=41.4

Q ss_pred             EEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCcc-EEEEeEeeecCCcceeeeeeh
Q psy5692          25 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD-LYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGe-L~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      |.|.|.+...-.-   ...|.+++..|.+.  ..+++.+.++|. |.|++++.+|.  ..-.|..+
T Consensus         1 ~~L~C~v~g~P~p---~v~W~k~~~~l~~~--~~~~~~~~~~~~~l~I~~~~~~D~--G~Y~C~a~   59 (76)
T cd05736           1 ASLRCHAEGIPLP---RLTWLKNGMDITPK--LSKQLTLIANGSELHISNVRYEDT--GAYTCIAK   59 (76)
T ss_pred             CEeEeEeeecCCC---EEEEEECCEECCCC--CCccEEEeCCCCEEEECcCCcccC--EEEEEEEE
Confidence            6899998654332   46999998777553  346888888874 99999987765  35666554

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=96.08  E-value=0.013  Score=38.10  Aligned_cols=61  Identities=13%  Similarity=0.232  Sum_probs=40.3

Q ss_pred             ecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEe-eecCCcceeeeeeh
Q psy5692          21 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRL-SITGNLSVKKMKVE   89 (98)
Q Consensus        21 rGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~-~~~~n~~~~~~~~~   89 (98)
                      .|+++.|.|.+-..-.-   ..+|++++..|.+.  .+.+|. .++|.|.|+++. .+|.  ..-.|...
T Consensus        18 ~g~~v~l~C~~~G~P~P---~i~W~k~g~~l~~~--~~~~~~-~~~g~L~i~~~~~~~D~--G~Y~C~A~   79 (94)
T cd05848          18 DEKKVILNCEARGNPVP---TYRWLRNGTEIDTE--SDYRYS-LIDGNLIISNPSEVKDS--GRYQCLAT   79 (94)
T ss_pred             CCCEEEEEEEeeecCCC---EEEEEECCeECccC--CCceEE-eeCCeEEEccCCccCcC--EEEEEEEE
Confidence            58999999998544322   57799998766432  234554 468999999974 3443  34566543

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=96.06  E-value=0.011  Score=38.15  Aligned_cols=52  Identities=21%  Similarity=0.358  Sum_probs=34.8

Q ss_pred             cCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc--Ccc-----EEEEeEeeecC
Q psy5692          22 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS--SGD-----LYVQIRLSITG   79 (98)
Q Consensus        22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp--sGe-----L~Ir~v~~~~~   79 (98)
                      |-++.|.|.+-..   ---...|.+++..|.+   ..+||.+..  .|.     |.|.++..+|.
T Consensus         1 g~~~~l~C~~~g~---p~~~i~W~k~~~~i~~---~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~   59 (88)
T cd05735           1 GQKKEMSCTAHGE---KPIIVRWEKEDRIINP---EMSRYLVSTKEVGDEVISTLQILPTVREDS   59 (88)
T ss_pred             CCeEEEEEEEECC---CCCEEEEeeCCEECCC---CCCcEEEEEecCCCcEEEEEEECCCCcccC
Confidence            6789999997533   2237899999976654   246898763  444     66666555553

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=96.03  E-value=0.0073  Score=38.40  Aligned_cols=49  Identities=14%  Similarity=0.263  Sum_probs=35.0

Q ss_pred             EEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccC--c--cEEEEeEeeecC
Q psy5692          25 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS--G--DLYVQIRLSITG   79 (98)
Q Consensus        25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlps--G--eL~Ir~v~~~~~   79 (98)
                      +.|.|.+-.+-+.   ...|.+++..|.+   .++||.+.++  |  .|.|++++.+|.
T Consensus         1 v~l~C~v~G~P~P---~i~W~k~~~~i~~---~~~r~~~~~~~~g~~~L~I~~~~~~D~   53 (75)
T cd05892           1 VKLECQISAIPPP---KIFWKRNNEMVQY---NTDRISLYQDNSGRVTLLIKNVNKKDA   53 (75)
T ss_pred             CEEEEEEEecCCC---eEEEEECCEECcC---CCCeEEEEEcCCCcEEEEECCCChhhC
Confidence            4688987433233   5789999977643   2468888764  3  699999999886

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=96.02  E-value=0.0099  Score=37.93  Aligned_cols=61  Identities=13%  Similarity=0.178  Sum_probs=40.0

Q ss_pred             eecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEee-ecCCcceeeeee
Q psy5692          20 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLS-ITGNLSVKKMKV   88 (98)
Q Consensus        20 irGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~-~~~n~~~~~~~~   88 (98)
                      +.|++|.|.|.+-.   +-...++|.++...|...  .+.+|. +.+|.|.|+++.. +|.  -.-.|.+
T Consensus        17 ~~~~~~~l~C~~~g---~p~p~i~W~k~~~~l~~~--~~~~~~-~~~~~L~i~~~~~~~d~--G~Y~C~a   78 (91)
T cd04967          17 SDEGKVSLNCRARG---SPPPTYRWLMNGTEIDDE--PDSRYS-LVGGNLVISNPSKAKDA--GRYQCLA   78 (91)
T ss_pred             CCCCEEEEEEeeeE---cCCCEEEEEECCEECCCC--CCCCEE-EECCEEEEecCCccCCC--EEEEEEE
Confidence            46789999999732   223479999998766321  244554 4689999998864 442  3445544

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=95.92  E-value=0.023  Score=36.04  Aligned_cols=63  Identities=13%  Similarity=0.199  Sum_probs=41.3

Q ss_pred             eEEEEccCCCCccceeEEeEEccCCe----e--ee-cC------cCCCceEEEcc----CccEEEEeEeeecCCcceeee
Q psy5692          24 TAVLRCQIPSYMSEYIIVTSWIQDDV----N--IY-LN------TDTGGKYVVLS----SGDLYVQIRLSITGNLSVKKM   86 (98)
Q Consensus        24 tAVLkC~IPs~V~d~V~V~SW~~Dd~----~--I~-p~------~~~dgKY~vlp----sGeL~Ir~v~~~~~n~~~~~~   86 (98)
                      +|+|.|.+++.-.....-..|.+.+.    .  ++ +.      ....||....+    ++.|.|++++..|+  ..=.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~--G~Y~C   79 (98)
T cd05718           2 SVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDE--GNYIC   79 (98)
T ss_pred             CEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccC--EEEEE
Confidence            68999998766544566789999762    1  12 11      12256665553    57899999999887  44555


Q ss_pred             ee
Q psy5692          87 KV   88 (98)
Q Consensus        87 ~~   88 (98)
                      .+
T Consensus        80 ~v   81 (98)
T cd05718          80 EF   81 (98)
T ss_pred             EE
Confidence            44

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=95.88  E-value=0.011  Score=36.89  Aligned_cols=49  Identities=10%  Similarity=0.194  Sum_probs=35.2

Q ss_pred             EEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCc----cEEEEeEeeecC
Q psy5692          25 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG----DLYVQIRLSITG   79 (98)
Q Consensus        25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG----eL~Ir~v~~~~~   79 (98)
                      +.|.|.+..+-..   ...|.+|+..|..   ...||.+..++    .|.|++++.+|.
T Consensus         1 v~L~C~v~G~P~P---~v~W~k~~~~i~~---~~~r~~~~~~~~~~~~L~I~~~~~~D~   53 (75)
T cd05744           1 VRLECRVSAIPPP---QIFWKKNNEMLTY---NTDRISLYQDNCGRICLLIQNANKEDA   53 (75)
T ss_pred             CEEEEEEeecCCC---eEEEEECCEECCC---CCCcEEEEEcCCCeEEEEECCCCcccC
Confidence            3688988655554   4679999976643   24588887654    399999998886

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=95.87  E-value=0.019  Score=36.52  Aligned_cols=66  Identities=20%  Similarity=0.173  Sum_probs=44.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .+..|.+|.|.|.+-.+   -.-..+|..++..+..+ .........+++.|.|.++..+|  ...-.|..+
T Consensus        11 ~v~~G~~v~l~C~~~G~---P~p~v~W~~~g~~~~~~-~~~~~~~~~~~~~L~I~~v~~~D--~g~Y~C~A~   76 (90)
T cd04972          11 VVYEGGTATIRCTAEGS---PLPKVEWIIAGLIVIQT-RTDTLETTVDIYNLQLSNITSET--QTTVTCTAE   76 (90)
T ss_pred             EEcCCCcEEEEEEEEEc---CCCeEEEEECCEEccCC-ccEEEEecCCEEEEEEecCCccc--CEEEEEEEE
Confidence            35689999999998643   34578999999655321 11112223467799999999988  566777654

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=95.86  E-value=0.021  Score=36.86  Aligned_cols=59  Identities=17%  Similarity=0.187  Sum_probs=40.4

Q ss_pred             ceee-cCeEEEEccCCCCccceeEEeEEccCCeeeecC-cCCCceEEEcc---CccEEEEeEeeecC
Q psy5692          18 NVIL-GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-TDTGGKYVVLS---SGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~Vir-GNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~-~~~dgKY~vlp---sGeL~Ir~v~~~~~   79 (98)
                      .+.+ |.++.|.|.+...-.   -..+|..++..|.+. ....|+|.+..   .+.|.|++++.+|.
T Consensus        12 ~~~~~g~~v~l~C~~~G~P~---P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~   75 (97)
T cd05869          12 TAMELEEQITLTCEASGDPI---PSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDA   75 (97)
T ss_pred             eEEEcCCCEEEEEEeeEeCC---CEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcC
Confidence            4455 699999999754322   257899987655332 22467887754   36899999987764

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=95.78  E-value=0.018  Score=36.93  Aligned_cols=60  Identities=20%  Similarity=0.273  Sum_probs=38.5

Q ss_pred             eEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEE---c-cCccEEEEeEeeecCCcceeeee
Q psy5692          24 TAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV---L-SSGDLYVQIRLSITGNLSVKKMK   87 (98)
Q Consensus        24 tAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~v---l-psGeL~Ir~v~~~~~n~~~~~~~   87 (98)
                      ++.|.|.+...-.--+. +.|.+|+..|-. ...+++|..   . -.|.|.|.+++..|.  ..-+|.
T Consensus         2 ~~~L~C~a~g~P~p~~~-v~W~~~g~~i~~-~~~~~~~~~~~~~~~~~~L~I~~v~~~D~--G~YtC~   65 (85)
T cd05854           2 NLTLQCHASHDPTMDLT-FTWSLDDFPIDL-DKPNGHYRRMEVKETIGDLVIVNAQLSHA--GTYTCT   65 (85)
T ss_pred             cEEEEEEEecCCCCCeE-EEEEECCeEccc-cCCCCcEEEEEecceEeEEEEccCChhhC--eEEEEE
Confidence            58899997544333233 579999976632 223566633   2 368999999999875  344443

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=95.72  E-value=0.017  Score=37.43  Aligned_cols=62  Identities=24%  Similarity=0.383  Sum_probs=40.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEE-ccCc---cEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV-LSSG---DLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~v-lpsG---eL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+..|.+|.|.|.+..+-.-   -..|++++..+.+    +++|.+ ..+|   .|.|.+++.+|..  .-.|..
T Consensus        12 ~v~eG~~v~L~C~v~g~P~p---~i~W~k~~~~~~~----~~~~~~~~~~~~~~~L~I~~~~~~D~G--~Y~C~a   77 (92)
T cd05891          12 TIMEGKTLNLTCTVFGNPDP---EVIWFKNDQDIEL----SEHYSVKLEQGKYASLTIKGVTSEDSG--KYSINV   77 (92)
T ss_pred             EEcCCCEEEEEEEEEEeCCC---eEEEEECCEECCC----CCCEEEEEcCCCEEEEEECCCChhhCE--EEEEEE
Confidence            45789999999987433222   2699999865533    455654 3343   6999999887753  445544

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=95.63  E-value=0.023  Score=37.01  Aligned_cols=67  Identities=12%  Similarity=0.099  Sum_probs=42.8

Q ss_pred             ecCeEEEEccCCCCc---cceeEEeEEccCC------eeee-cC-------cCCCceEEEcc----CccEEEEeEeeecC
Q psy5692          21 LGNTAVLRCQIPSYM---SEYIIVTSWIQDD------VNIY-LN-------TDTGGKYVVLS----SGDLYVQIRLSITG   79 (98)
Q Consensus        21 rGNtAVLkC~IPs~V---~d~V~V~SW~~Dd------~~I~-p~-------~~~dgKY~vlp----sGeL~Ir~v~~~~~   79 (98)
                      +|.+|+|.|.+++..   .....-..|.+.+      ..++ ..       .+..||+.+.+    +..|.|++++.+|.
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            699999999875442   1344557788753      1111 11       12457888854    34799999999884


Q ss_pred             Ccceeeeeeh
Q psy5692          80 NLSVKKMKVE   89 (98)
Q Consensus        80 n~~~~~~~~~   89 (98)
                        ..=.|.+-
T Consensus        81 --G~Y~C~v~   88 (106)
T cd05877          81 --GRYRCEVI   88 (106)
T ss_pred             --EEEEEEEE
Confidence              66666654

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>KOG3513|consensus

Probab=95.60  E-value=0.019  Score=53.26  Aligned_cols=56  Identities=18%  Similarity=0.317  Sum_probs=45.0

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGN   80 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n   80 (98)
                      +|..|.+++|.|..-.   -=..+.+|..++. +..   .+|||.++++|.|-|+|++..|+-
T Consensus       437 ~a~~g~~v~i~C~~~a---sP~p~~~W~k~~~-~~~---~~~r~~i~edGtL~I~n~t~~DaG  492 (1051)
T KOG3513|consen  437 MAVVGGTVTIDCKPFA---SPKPKVSWLKGGE-KLL---QSGRIRILEDGTLEISNVTRSDAG  492 (1051)
T ss_pred             EEEeCCeEEEeeccCC---CCcceEEEEcCCc-ccc---cCceEEECCCCcEEecccCcccCc
Confidence            5779999999999421   2245789999997 333   489999999999999999998863

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=95.50  E-value=0.014  Score=36.91  Aligned_cols=48  Identities=10%  Similarity=0.180  Sum_probs=35.0

Q ss_pred             EEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCc----cEEEEeEeeecC
Q psy5692          26 VLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG----DLYVQIRLSITG   79 (98)
Q Consensus        26 VLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG----eL~Ir~v~~~~~   79 (98)
                      .|.|.+.-+-..   ...|.+|+..|.+   ..+||.+...+    .|.|.+++.+|.
T Consensus         2 ~l~C~v~G~P~P---~v~W~k~~~~l~~---~~~~~~~~~~~~~~~~L~I~~v~~~D~   53 (75)
T cd05893           2 RLECRVSGVPHP---QIFWKKENESLTH---NTDRVSMHQDNCGYICLLIQGATKEDA   53 (75)
T ss_pred             EEEEEEeEecCC---EEEEEECCEECCC---CCCeEEEEEcCCCEEEEEECCCCHHHC
Confidence            688887544444   5679999976643   35788887654    599999998886

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=95.45  E-value=0.025  Score=35.31  Aligned_cols=49  Identities=22%  Similarity=0.301  Sum_probs=34.3

Q ss_pred             EEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc-CccEEEEeEeeecC
Q psy5692          25 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS-SGDLYVQIRLSITG   79 (98)
Q Consensus        25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp-sGeL~Ir~v~~~~~   79 (98)
                      ++|.|.+..+-.   -..+|++++..|.+   ..++|.+.. .|.|.|.+++.+|.
T Consensus         1 v~L~C~~~g~P~---p~v~W~k~g~~l~~---~~~~~~~~~~~~~L~I~~~~~~D~   50 (77)
T cd05760           1 VTLRCHIDGHPR---PTYQWFRDGTPLSD---GQGNYSVSSKERTLTLRSAGPDDS   50 (77)
T ss_pred             CEEEEEeeecCC---CcEEEEECCEECCC---CCccEEEeCCCCEEEEeeCCcccC
Confidence            479998754432   35799999876644   245676654 46899999998774

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=95.40  E-value=0.016  Score=35.13  Aligned_cols=60  Identities=12%  Similarity=0.109  Sum_probs=37.5

Q ss_pred             ecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          21 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        21 rGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .|.++.|.|.+..+-..   ..+|.+++..+.+.   .........+.|.|.+++.+|.  ..-.|..
T Consensus         8 ~G~~v~L~C~~~g~p~p---~i~W~k~~~~~~~~---~~~~~~~~~~~L~i~~v~~~D~--G~Y~C~a   67 (82)
T cd05856           8 VGSSVRLKCVASGNPRP---DITWLKDNKPLTPT---EIGESRKKKWTLSLKNLKPEDS--GKYTCHV   67 (82)
T ss_pred             CCCeEEEEEEeeEeCCC---cEEEEECCcCCcCC---ccceecCceEEEEEccCChhhC--EEEEEEE
Confidence            69999999997544332   36799998655442   1112222346788888887774  3455544

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=95.38  E-value=0.034  Score=35.35  Aligned_cols=67  Identities=15%  Similarity=0.214  Sum_probs=42.5

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCC-----eeeec-C-------cCCCceEEEccCc-----cEEEEeEeeecCC
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYL-N-------TDTGGKYVVLSSG-----DLYVQIRLSITGN   80 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I~p-~-------~~~dgKY~vlpsG-----eL~Ir~v~~~~~n   80 (98)
                      |..|.+|.|.|.+++....  ....|.+..     ..|.. .       ....+|+.+..++     -|.|++++.+|. 
T Consensus         3 v~~G~~v~L~C~~~~~~~~--~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~-   79 (105)
T cd00099           3 VSEGESVTLSCTYSGSFSS--YYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDS-   79 (105)
T ss_pred             ecCCCCEEEEEEEeCCcCc--ceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHC-
Confidence            5689999999998765223  244676642     22221 1       1245788876543     788999998875 


Q ss_pred             cceeeeeeh
Q psy5692          81 LSVKKMKVE   89 (98)
Q Consensus        81 ~~~~~~~~~   89 (98)
                       ..=.|.+.
T Consensus        80 -G~Y~C~v~   87 (105)
T cd00099          80 -AVYYCAVS   87 (105)
T ss_pred             -EEEEEEEe
Confidence             55556554

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=95.29  E-value=0.039  Score=36.53  Aligned_cols=65  Identities=14%  Similarity=0.200  Sum_probs=43.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEcc-CCeeeecCcCCCceEEEccC----ccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQ-DDVNIYLNTDTGGKYVVLSS----GDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~-Dd~~I~p~~~~dgKY~vlps----GeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .+..|.+|.|.|.+...-.  .-...|.. ++..+.+   .+.||.+..+    +.|.|++++.+|.  ..-+|...
T Consensus        11 ~v~~G~~v~l~C~v~G~P~--~p~i~W~~~~g~~l~~---~~~r~~v~~~~~~~~~L~I~~v~~~D~--G~YtC~A~   80 (96)
T cd05865          11 EISVGESKFFLCQVAGEAK--DKDISWFSPNGEKLTP---NQQRISVVRNDDYSSTLTIYNANIDDA--GIYKCVVS   80 (96)
T ss_pred             EECCCCeEEEEEEEeCCCC--CCEEEEECCCCcCccc---cCCeEEEEeCCCCceEEEEeccChhhC--EEEEEEEE
Confidence            5678999999998743221  23667997 5555433   2457776533    6799999999884  44555543

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=95.22  E-value=0.03  Score=34.38  Aligned_cols=60  Identities=20%  Similarity=0.245  Sum_probs=36.8

Q ss_pred             EEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc---CccEEEEeEeeecCCcceeeeee
Q psy5692          25 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS---SGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp---sGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+|+|.+++--.  .....|++++..|.+....+.+|.+..   .+.|.|.+++.+|.  ..=.|.+
T Consensus         1 ~~L~C~a~~~~p--~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds--G~Y~C~a   63 (76)
T cd05895           1 LVLRCETVSEYP--SLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADN--GEYKCMV   63 (76)
T ss_pred             CEEEEecccCCC--CCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccC--EEEEEEE
Confidence            379998642211  124679999876644333445665543   47799999987664  4455544

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=95.06  E-value=0.015  Score=36.49  Aligned_cols=67  Identities=16%  Similarity=0.234  Sum_probs=44.0

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eeee----------cCcCCCceEEEccCcc-----EEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIY----------LNTDTGGKYVVLSSGD-----LYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I~----------p~~~~dgKY~vlpsGe-----L~Ir~v~~~   77 (98)
                      .+..|.+|.|.|.++ . -+......|.+.+     ..|+          +.....+|+.+..++.     |.|+|++..
T Consensus        12 ~~~~G~~v~L~C~~~-~-~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~   89 (114)
T PF07686_consen   12 TVQEGESVTLPCSYS-S-SSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPS   89 (114)
T ss_dssp             EEETTSEEEEEEEEE-S-SSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGG
T ss_pred             EEecCCCEEEEEEEe-C-CCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcC
Confidence            455899999999988 3 3455566777632     2332          1123467888887777     999999887


Q ss_pred             cCCcceeeeee
Q psy5692          78 TGNLSVKKMKV   88 (98)
Q Consensus        78 ~~n~~~~~~~~   88 (98)
                      |.  ..=.|.+
T Consensus        90 Ds--G~Y~C~v   98 (114)
T PF07686_consen   90 DS--GTYFCQV   98 (114)
T ss_dssp             GE--EEEEEEE
T ss_pred             cC--EEEEEEE
Confidence            74  3444444

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=94.91  E-value=0.065  Score=31.68  Aligned_cols=37  Identities=16%  Similarity=0.323  Sum_probs=26.8

Q ss_pred             EeeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeec
Q psy5692          13 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYL   53 (98)
Q Consensus        13 V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p   53 (98)
                      .+.. .+..|-++.|.|.+++.-.  . ...|.+++..+.+
T Consensus         6 ~~~~-~v~~g~~~~l~C~~~~~p~--~-~~~w~~~~~~~~~   42 (80)
T PF13895_consen    6 SSPQ-SVEEGDSVTLTCSVSGNPP--P-QVQWYKNGSPINS   42 (80)
T ss_dssp             EESS-EEETTSEEEEEEEEESSSS--S-EEEEEETTEEEEE
T ss_pred             ccce-EEeCCCcEEEEEEEEcccc--e-eeeeeeeeeeeee
Confidence            3445 7789999999999884433  2 3789998866643

...

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=94.88  E-value=0.071  Score=32.20  Aligned_cols=66  Identities=20%  Similarity=0.237  Sum_probs=38.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEE-ccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV-LSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~v-lpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .+-.|.++.|.|.+-.+-.   ....|.+++..+.+... -..+.. .+...|.|.++..+|.-  .-.|.+.
T Consensus         5 ~~~~G~~~~l~C~~~~~p~---~~v~W~k~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g--~Y~C~~~   71 (85)
T cd05729           5 AVPAGSTVRLKCPASGNPR---PTITWLKDGKPFKKEHR-IGGYKVRKKKWTLILESVVPSDSG--KYTCIVE   71 (85)
T ss_pred             EecCCCcEEEEEEcCCCCC---CeEEEEECCEECcccCc-eeEEEccCcEEEEEEeECCcccCE--EEEEEEE
Confidence            3457999999999765532   24699999865543110 011111 23346888887766543  3455543

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=94.68  E-value=0.11  Score=35.96  Aligned_cols=70  Identities=13%  Similarity=0.106  Sum_probs=41.7

Q ss_pred             eceeecCeEEEEccCCCCccc-eeEEeEEccCC------eeee-cC---------cCCCceEEEc-----cCccEEEEeE
Q psy5692          17 HNVILGNTAVLRCQIPSYMSE-YIIVTSWIQDD------VNIY-LN---------TDTGGKYVVL-----SSGDLYVQIR   74 (98)
Q Consensus        17 ~~VirGNtAVLkC~IPs~V~d-~V~V~SW~~Dd------~~I~-p~---------~~~dgKY~vl-----psGeL~Ir~v   74 (98)
                      -.+..|-+|.|.|...+...+ -..-..|.+.+      ..|+ +.         ....||....     -++.|.|+|+
T Consensus         8 v~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv   87 (116)
T cd05879           8 VYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNL   87 (116)
T ss_pred             EEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccC
Confidence            367799999999999765422 23567894421      1122 11         1122566543     2455999999


Q ss_pred             eeecCCcceeeeee
Q psy5692          75 LSITGNLSVKKMKV   88 (98)
Q Consensus        75 ~~~~~n~~~~~~~~   88 (98)
                      +..|.  ..-.|++
T Consensus        88 ~~sD~--G~Y~C~v   99 (116)
T cd05879          88 DYTDN--GTFTCDV   99 (116)
T ss_pred             CcccC--EEEEEEE
Confidence            98886  4445554

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=94.49  E-value=0.099  Score=33.45  Aligned_cols=53  Identities=17%  Similarity=0.166  Sum_probs=32.0

Q ss_pred             cCeEEEEccCCCCccceeEEeEEccCC----eeeecCcCCCceEEEcc----------CccEEEEeEeeecC
Q psy5692          22 GNTAVLRCQIPSYMSEYIIVTSWIQDD----VNIYLNTDTGGKYVVLS----------SGDLYVQIRLSITG   79 (98)
Q Consensus        22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd----~~I~p~~~~dgKY~vlp----------sGeL~Ir~v~~~~~   79 (98)
                      |.+|.|.|.+-+.-..   -.+|++++    ..+.|.  ......+++          .+-|+|.+|+.+|+
T Consensus         1 G~~v~l~C~v~g~P~P---~i~W~k~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   67 (90)
T cd04974           1 GSDVEFHCKVYSDAQP---HIQWLKHVEVNGSKYGPD--GLPYVTVLKVAGINTTDNESEVLYLRNVSFDDA   67 (90)
T ss_pred             CCcEEEEEEEeCCCCC---eEEEEEecccCCceeCCC--CCceEEEEEecCCcccccccceEEEeccccccC
Confidence            7899999998655433   37899873    223221  111122222          35689999988775

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=94.39  E-value=0.053  Score=36.36  Aligned_cols=56  Identities=18%  Similarity=0.148  Sum_probs=39.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccC--------ccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS--------GDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlps--------GeL~Ir~v~~~~~   79 (98)
                      .|..|.++.|.|.+-.|-.  .-...|.+|+..|-.    ++++.+.+.        +.|.|+.+..+|.
T Consensus        14 ~v~~G~~v~L~c~v~g~~P--~p~v~W~Kdg~~i~~----~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~   77 (101)
T cd04975          14 FVNLGENLNLVVEVEAYPP--PPHINWTYDNRTLTN----KLTEIVTSENESEYRYVSELKLVRLKESEA   77 (101)
T ss_pred             EEECCCCEEEEEEEEecCC--CCccEEEeCCeeCCC----CcceeEEEeccCcceEEEEEEEeecCHhhC
Confidence            4558999999999765221  236789999977632    455555543        6799999988875

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=94.25  E-value=0.19  Score=32.49  Aligned_cols=56  Identities=13%  Similarity=0.127  Sum_probs=34.7

Q ss_pred             cCeEEEEccCCCCccceeEEeEEccCC----eee---ecC------cCCCceEEEc-c---CccEEEEeEeeecC
Q psy5692          22 GNTAVLRCQIPSYMSEYIIVTSWIQDD----VNI---YLN------TDTGGKYVVL-S---SGDLYVQIRLSITG   79 (98)
Q Consensus        22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd----~~I---~p~------~~~dgKY~vl-p---sGeL~Ir~v~~~~~   79 (98)
                      |.+|+|.|..++- . -+...+|.+.+    ..|   ++.      .+..+|..+. |   +..|.|+|++.+|.
T Consensus         1 G~~vtL~C~~~~~-~-~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~   73 (97)
T cd05846           1 GGNVTLSCNLTLP-E-EVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDE   73 (97)
T ss_pred             CCcEEEEEEeCCC-C-eeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeee
Confidence            7899999986543 2 35678898753    122   121      1224455552 3   45599999999885

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=94.24  E-value=0.17  Score=33.80  Aligned_cols=71  Identities=14%  Similarity=0.248  Sum_probs=41.5

Q ss_pred             ceeecCeEEEEccCCCCcc-ceeEEeEEccCC------eee--ecCcC----CCceE----EEc--c---CccEEEEeEe
Q psy5692          18 NVILGNTAVLRCQIPSYMS-EYIIVTSWIQDD------VNI--YLNTD----TGGKY----VVL--S---SGDLYVQIRL   75 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~-d~V~V~SW~~Dd------~~I--~p~~~----~dgKY----~vl--p---sGeL~Ir~v~   75 (98)
                      .|..|.+|.|.|.+++.-. .-.....|.+..      ..+  |....    ..++|    ...  +   +..|.|.+++
T Consensus         9 ~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   88 (116)
T cd05715           9 YAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHNLQ   88 (116)
T ss_pred             EEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEeeCC
Confidence            5678999999998854321 112357886432      122  21111    23344    332  2   2459999999


Q ss_pred             eecCCcceeeeeehH
Q psy5692          76 SITGNLSVKKMKVEE   90 (98)
Q Consensus        76 ~~~~n~~~~~~~~~~   90 (98)
                      .+|.  .+=.|.+..
T Consensus        89 ~~D~--G~Y~C~v~~  101 (116)
T cd05715          89 FTDN--GTYTCDVKN  101 (116)
T ss_pred             cccC--EEEEEEEEe
Confidence            9986  666776653

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>PHA02785 IL-beta-binding protein; Provisional

Probab=94.15  E-value=0.069  Score=42.26  Aligned_cols=67  Identities=12%  Similarity=0.176  Sum_probs=45.2

Q ss_pred             eecCeEEEEccCCCCccceeEEeEEccCCeeeecC-cCCCceEEEcc-----------CccEEEEeEeeecCCcceeeee
Q psy5692          20 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-TDTGGKYVVLS-----------SGDLYVQIRLSITGNLSVKKMK   87 (98)
Q Consensus        20 irGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~-~~~dgKY~vlp-----------sGeL~Ir~v~~~~~n~~~~~~~   87 (98)
                      ..|.++.|.|....+-...-....|..|+..|-.. ...+|++.+..           +|.|.|.+|+.+|.  ..-.|.
T Consensus       233 ~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~--G~Y~C~  310 (326)
T PHA02785        233 SIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDA--TTFTCM  310 (326)
T ss_pred             cCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcC--eeeEEE
Confidence            46999999999854433332467999998766322 12356665533           57899999999885  555664


Q ss_pred             e
Q psy5692          88 V   88 (98)
Q Consensus        88 ~   88 (98)
                      .
T Consensus       311 A  311 (326)
T PHA02785        311 A  311 (326)
T ss_pred             E
Confidence            4

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=94.12  E-value=0.15  Score=34.27  Aligned_cols=59  Identities=14%  Similarity=0.164  Sum_probs=36.9

Q ss_pred             ecCeEEEEccCCCCccc-------eeEEeEEccCC----eeee--c------CcCCCceEEEcc------CccEEEEeEe
Q psy5692          21 LGNTAVLRCQIPSYMSE-------YIIVTSWIQDD----VNIY--L------NTDTGGKYVVLS------SGDLYVQIRL   75 (98)
Q Consensus        21 rGNtAVLkC~IPs~V~d-------~V~V~SW~~Dd----~~I~--p------~~~~dgKY~vlp------sGeL~Ir~v~   75 (98)
                      .|.+|+|.|.++....+       ......|.+.+    ..++  -      .....||+.+.+      +..|.|+|++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            48899999999654432       23455677642    2222  1      123457888742      3459999999


Q ss_pred             eecC
Q psy5692          76 SITG   79 (98)
Q Consensus        76 ~~~~   79 (98)
                      ..|.
T Consensus        81 ~sD~   84 (110)
T cd05878          81 SSDS   84 (110)
T ss_pred             hhhC
Confidence            8884

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=93.90  E-value=0.068  Score=32.71  Aligned_cols=54  Identities=13%  Similarity=0.077  Sum_probs=35.5

Q ss_pred             EEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          26 VLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        26 VLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      +|.|.+-.+-..   ..+|.+++..+.+    +......+.|.|.|++++.+|.  ..-.|..
T Consensus         2 ~L~C~~~G~P~P---~v~W~k~~~~~~~----~~~~~~~~~~~L~I~~v~~~D~--G~Y~C~a   55 (71)
T cd05876           2 VLECIAEGLPTP---EVHWDRIDGPLSP----NRTKKLNNNKTLQLDNVLESDD--GEYVCTA   55 (71)
T ss_pred             EEEEEeeEecCC---eEEEEECCcCCCC----CceeEEcCCCEEEEcccCHHhC--EEEEEEE
Confidence            688987544333   6799999865533    2223346789999999998774  2455544

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=93.83  E-value=0.18  Score=32.48  Aligned_cols=67  Identities=18%  Similarity=0.309  Sum_probs=41.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC------eeeecCc----CCCceEEEcc-----CccEEEEeEeeecCCcc
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIYLNT----DTGGKYVVLS-----SGDLYVQIRLSITGNLS   82 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd------~~I~p~~----~~dgKY~vlp-----sGeL~Ir~v~~~~~n~~   82 (98)
                      .|..|.+|.|.|.++.. ...  ...|.+..      ..++...    ...+||.+..     +-.|.|++++.+|.  .
T Consensus         9 ~~~~G~~v~L~C~~~~~-~~~--~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds--G   83 (109)
T cd04983           9 SVQEGENVTLNCNYSTS-TFY--YLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDS--A   83 (109)
T ss_pred             EEcCCCCEEEEEEECCC-Ccc--EEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHC--E
Confidence            45689999999998754 222  34587642      2233211    2468997754     33688888877774  4


Q ss_pred             eeeeeeh
Q psy5692          83 VKKMKVE   89 (98)
Q Consensus        83 ~~~~~~~   89 (98)
                      .=.|.+.
T Consensus        84 ~Y~C~~~   90 (109)
T cd04983          84 VYFCALS   90 (109)
T ss_pred             EEEEEEe
Confidence            4555543

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=93.82  E-value=0.13  Score=33.00  Aligned_cols=67  Identities=13%  Similarity=0.174  Sum_probs=41.5

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCC-----eeee----cCcCCCceEEEcc---Cc--cEEEEeEeeecCCccee
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIY----LNTDTGGKYVVLS---SG--DLYVQIRLSITGNLSVK   84 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I~----p~~~~dgKY~vlp---sG--eL~Ir~v~~~~~n~~~~   84 (98)
                      |-.|.++.|.|.++..-.+  ....|.+-+     ..|.    ......||+.+..   +|  -|.|++++.+|.  +.=
T Consensus         4 ~~~G~~vtl~C~~~~~~~~--~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~Ds--G~Y   79 (98)
T cd05716           4 GELGGSVTIPCPYPPKNRS--YEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDA--GWY   79 (98)
T ss_pred             EEeCCeEEEEeeCCCCCCC--cEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHC--EEE
Confidence            5689999999997654222  344788775     1121    1123468888753   23  488889988885  444


Q ss_pred             eeeeh
Q psy5692          85 KMKVE   89 (98)
Q Consensus        85 ~~~~~   89 (98)
                      -|.+.
T Consensus        80 ~C~~~   84 (98)
T cd05716          80 WCGVG   84 (98)
T ss_pred             EEEcc
Confidence            55443

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=93.79  E-value=0.25  Score=31.50  Aligned_cols=56  Identities=9%  Similarity=0.186  Sum_probs=37.0

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      -+..|.+++|.|...+.-.  .....|.+++..|..           .++.|.|+++   .+.+..-.|...
T Consensus        11 ~v~~G~~V~L~C~~~~~p~--~~~~~W~kng~~l~~-----------~~~~l~i~~~---~~dsG~Y~C~a~   66 (78)
T cd05752          11 TIFQGEKVTLTCNGFNSPE--QNSTQWYHNGKLLET-----------TTNSYRIRAA---NNDSGEYRCQTQ   66 (78)
T ss_pred             EeeCCCCEEEEEeCCCCCC--CccEEEEECCEEeec-----------cCCeEEEeec---ccCCEEeEEECC
Confidence            5678999999999876532  122599999866521           2456777777   344455666543

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=93.74  E-value=0.11  Score=39.79  Aligned_cols=57  Identities=11%  Similarity=0.182  Sum_probs=39.9

Q ss_pred             eeecCeEEEEccCCCCcc-ce-eEEeEEccCCeeeecCcCCCceEEEccC-ccEEEEeEeeecC
Q psy5692          19 VILGNTAVLRCQIPSYMS-EY-IIVTSWIQDDVNIYLNTDTGGKYVVLSS-GDLYVQIRLSITG   79 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~-d~-V~V~SW~~Dd~~I~p~~~~dgKY~vlps-GeL~Ir~v~~~~~   79 (98)
                      +..|.++.|.|....-.. .+ --..+|.+|...|.+    ++++.+.++ |.|.|.+|+.+|.
T Consensus       141 ~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~----~~r~~~~~~~~~L~I~~V~~~Ds  200 (227)
T PHA02826        141 FNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLY----TDRIQLRNNNSTLVIKSATHDDS  200 (227)
T ss_pred             EecCCCEEEEeeCCCCccccCCCceEEEEECCEECCC----CCCEEEeCCCCEEEECcCCHHhC
Confidence            457999999998642110 01 125689999977754    457777665 4799999998875

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=93.56  E-value=0.11  Score=33.01  Aligned_cols=53  Identities=17%  Similarity=0.173  Sum_probs=32.6

Q ss_pred             cCeEEEEccCCCCccceeEEeEEccCC----eeeecCcCCCceEEEccC----------ccEEEEeEeeecC
Q psy5692          22 GNTAVLRCQIPSYMSEYIIVTSWIQDD----VNIYLNTDTGGKYVVLSS----------GDLYVQIRLSITG   79 (98)
Q Consensus        22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd----~~I~p~~~~dgKY~vlps----------GeL~Ir~v~~~~~   79 (98)
                      |++|.|.|.+.+.-..   ..+|+++.    ..+.|.  ......+++.          +.|.|++++.+|+
T Consensus         1 G~~v~L~C~~~g~P~P---~i~W~k~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   67 (90)
T cd05858           1 GSTVEFVCKVYSDAQP---HIQWLKHVEKNGSKYGPD--GLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDA   67 (90)
T ss_pred             CCeEEEEEEEecCCCC---EEEEEEecccCCcEeCCC--CCeeEEEeccCCceecCCceeEEEEccCCHHHC
Confidence            7899999998655443   57898853    223221  0112223322          4699999988875

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>smart00406 IGv Immunoglobulin V-Type

Probab=93.53  E-value=0.14  Score=30.56  Aligned_cols=55  Identities=11%  Similarity=0.155  Sum_probs=32.6

Q ss_pred             eEEEEccCCCCccceeEEeEEccCC-----eeeecCc---------CCCceEEEccC-----ccEEEEeEeeecC
Q psy5692          24 TAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYLNT---------DTGGKYVVLSS-----GDLYVQIRLSITG   79 (98)
Q Consensus        24 tAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I~p~~---------~~dgKY~vlps-----GeL~Ir~v~~~~~   79 (98)
                      +|.|.|.+.+.-.. .....|.+..     ..|....         ...+|+.+...     ..|.|++++.+|.
T Consensus         1 ~v~l~C~~~~~~~~-~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~   74 (81)
T smart00406        1 SVTLSCKASGFTFS-SYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDT   74 (81)
T ss_pred             CEEEEEEEeccccc-eeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHC
Confidence            57899997654433 3457787643     2222111         24578877643     3477888887764

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=93.44  E-value=0.084  Score=33.65  Aligned_cols=47  Identities=13%  Similarity=0.163  Sum_probs=33.5

Q ss_pred             EEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692          26 VLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        26 VLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      -|.|.+-.+-.--   .+|.+|+..|.+   ..++|.+. .+.|.|.+++.+|+
T Consensus         2 ~l~c~v~g~P~P~---v~W~kdg~~l~~---~~~~~~~~-~~~L~I~~v~~~D~   48 (72)
T cd07702           2 RLTPKVKAFPAPE---VIWLKDGLPAAE---KCSRYHVD-GYSLVIKDVTEEDA   48 (72)
T ss_pred             eEEeeEEEcCCCe---EEEEECCEECCC---CCcEEEeC-CCEEEECcCCHHHC
Confidence            3778875555433   499999976643   34678764 46899999998886

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=93.17  E-value=0.16  Score=34.02  Aligned_cols=67  Identities=18%  Similarity=0.165  Sum_probs=39.8

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCC-eee---------ecCcCCCceEEEc----cCcc--EEEEeEeeecCCcc
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNI---------YLNTDTGGKYVVL----SSGD--LYVQIRLSITGNLS   82 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-~~I---------~p~~~~dgKY~vl----psGe--L~Ir~v~~~~~n~~   82 (98)
                      +-.|.+|+|.|..+..   -..-.+|..++ ..+         +......+|+.+.    .+|.  |-|++++.+|  ++
T Consensus         4 ~~~G~~VtL~C~~s~~---~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sD--sg   78 (94)
T cd07690           4 GKKGDTAELPCTASQK---KSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIED--SD   78 (94)
T ss_pred             eeCCCCEEEEEEeCCC---CCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHH--CE
Confidence            3479999999997743   34556798655 321         1111223333333    2454  9999998887  35


Q ss_pred             eeeeeehH
Q psy5692          83 VKKMKVEE   90 (98)
Q Consensus        83 ~~~~~~~~   90 (98)
                      .=-|.++.
T Consensus        79 tY~C~v~~   86 (94)
T cd07690          79 TYICEVED   86 (94)
T ss_pred             EEEEEECC
Confidence            55566543

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>KOG4222|consensus

Probab=93.08  E-value=0.13  Score=48.69  Aligned_cols=73  Identities=18%  Similarity=0.294  Sum_probs=56.1

Q ss_pred             ceeeeceEEEEeeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCC
Q psy5692           3 PVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGN   80 (98)
Q Consensus         3 AVV~Q~Yev~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n   80 (98)
                      ||++..|.++-.+. .+..|+.|+|-|.=|.--.  ....||..|+..+-  ...-.++..-..|-|+|.||++.|+-
T Consensus       128 avlrddfrv~prd~-~~a~ge~avlEcgpP~ghp--eptvSw~Kdg~pl~--~~~~~~~~lisgG~LlIsnvrksD~G  200 (1281)
T KOG4222|consen  128 AVLRDDFRVSPRDV-QAAVGEEAVLECGPPRGHP--EPTVSWVKDGKPLD--HYDVPIIALISGGNLLISNVRKSDEG  200 (1281)
T ss_pred             EEechhcccCcccc-cccccceeEEeccCCCCCC--CCcceeecCCCccc--cccceeEEEecCCcEEEeccccCCCc
Confidence            67788888888887 8999999999999543333  35789999994432  11235677778999999999999863

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=93.07  E-value=0.17  Score=31.51  Aligned_cols=60  Identities=15%  Similarity=0.223  Sum_probs=37.2

Q ss_pred             cCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          22 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      |-.+.|.|.+..+-   .-..+|.+++..|.+.. .+..+ ....+.|.|.+++..|+  ..-.|..
T Consensus         1 g~~~~l~C~a~G~P---~P~i~W~k~g~~i~~~~-~~~~~-~~~~~~l~i~~v~~~D~--G~Y~C~A   60 (76)
T cd05868           1 GEDGTLICRANGNP---KPSISWLTNGVPIEIAP-TDPSR-KVDGDTIIFSKVQERSS--AVYQCNA   60 (76)
T ss_pred             CCCEEEEEEeeEeC---CCeEEEEECCEEccccC-CCceE-EecCCEEEECCCCHhhC--EEEEEEE
Confidence            67899999974332   23589999987764321 12222 23445788888887764  4445543

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=92.93  E-value=0.34  Score=31.15  Aligned_cols=61  Identities=20%  Similarity=0.222  Sum_probs=37.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----e-eeecCc----CCCceEEEccCcc---EEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----V-NIYLNT----DTGGKYVVLSSGD---LYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~-~I~p~~----~~dgKY~vlpsGe---L~Ir~v~~~~~   79 (98)
                      .|..|.+|.|.|.+.+...++ .-..|.+-.     . .++...    ...+||.+..++.   |.|++++..|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~-~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Ds   75 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISG-NYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDE   75 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCC-CCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhC
Confidence            366899999999975442122 224565432     1 222211    1246899876655   88999987775

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=92.87  E-value=0.45  Score=30.99  Aligned_cols=59  Identities=22%  Similarity=0.326  Sum_probs=36.3

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCC------eeeecCcC----CCceEEEccCc---cEEEEeEeeecC
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIYLNTD----TGGKYVVLSSG---DLYVQIRLSITG   79 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd------~~I~p~~~----~dgKY~vlpsG---eL~Ir~v~~~~~   79 (98)
                      |-.|.++.|.|.++.....  .-.+|.+-.      ..++....    ..+||.+.+++   .|.|++++.+|.
T Consensus        12 v~~G~~v~L~C~~~~~~~~--~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Ds   83 (106)
T cd04980          12 VSPGESATISCKASQSVSS--NYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDA   83 (106)
T ss_pred             ECCCCCEEEEEEECCCCCC--CcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHC
Confidence            3479999999997654312  246687542      23333211    23688886544   488888887763

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=92.78  E-value=0.26  Score=33.33  Aligned_cols=69  Identities=16%  Similarity=0.334  Sum_probs=39.9

Q ss_pred             ceeecCeEEEEccCCCC--ccceeEEeEEcc---C-C--eee-ecCc----CCC----ceEEEc-----cCccEEEEeEe
Q psy5692          18 NVILGNTAVLRCQIPSY--MSEYIIVTSWIQ---D-D--VNI-YLNT----DTG----GKYVVL-----SSGDLYVQIRL   75 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~--V~d~V~V~SW~~---D-d--~~I-~p~~----~~d----gKY~vl-----psGeL~Ir~v~   75 (98)
                      .|++|.+|.|.|.+.+.  ..+.. ...|.+   + .  ..+ +-..    ..+    +|+...     .+..|+|++++
T Consensus         9 ~~~~G~~v~L~C~~s~~~~~~~~~-~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v~   87 (115)
T cd05880           9 EAVNGTDVRLKCTFSSSAPIGDTL-VITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQLQ   87 (115)
T ss_pred             EEEcCCCEEEEEEEEeCCCCCCcE-EEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeCC
Confidence            46799999999997432  23333 355853   1 1  223 2211    123    344332     24559999999


Q ss_pred             eecCCcceeeeeeh
Q psy5692          76 SITGNLSVKKMKVE   89 (98)
Q Consensus        76 ~~~~n~~~~~~~~~   89 (98)
                      .+|.  ..=.|.+.
T Consensus        88 ~~D~--G~Y~C~v~   99 (115)
T cd05880          88 PTDN--GTYTCQVK   99 (115)
T ss_pred             hhhC--EEEEEEEE
Confidence            9987  66666654

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=92.73  E-value=0.32  Score=32.54  Aligned_cols=61  Identities=15%  Similarity=0.130  Sum_probs=40.6

Q ss_pred             ecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEc--c-----CccEEEEeEee-ecCCcceeeeeeh
Q psy5692          21 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL--S-----SGDLYVQIRLS-ITGNLSVKKMKVE   89 (98)
Q Consensus        21 rGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vl--p-----sGeL~Ir~v~~-~~~n~~~~~~~~~   89 (98)
                      .|.+|.|.|.+-.   +--...+|..|+..|.+   .+.||.+.  +     .+.|.|+++.. +|..  .-.|...
T Consensus        22 ~g~~v~L~C~a~G---~P~p~i~W~k~g~~l~~---~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G--~Y~C~A~   90 (109)
T cd05773          22 GSSDANLVCQAQG---VPRVQFRWAKNGVPLDL---GNPRYEETTEHTGTVHTSILTIINVSAALDYA--LFTCTAH   90 (109)
T ss_pred             CCCEEEEEEECcc---cCCCEEEEEECCEECCC---CCCeEEEEeeccCccceeEEEECcCCccCCCE--EEEEEEE
Confidence            5799999999743   22346899999877643   24577643  3     25688988863 5543  5677653

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=92.16  E-value=0.23  Score=32.28  Aligned_cols=66  Identities=12%  Similarity=0.129  Sum_probs=35.2

Q ss_pred             ecCeEEEEccCCCCc---cceeEEeEEccC-----C-eeeecCc--------CCCceEEEc----cCccEEEEeEeeecC
Q psy5692          21 LGNTAVLRCQIPSYM---SEYIIVTSWIQD-----D-VNIYLNT--------DTGGKYVVL----SSGDLYVQIRLSITG   79 (98)
Q Consensus        21 rGNtAVLkC~IPs~V---~d~V~V~SW~~D-----d-~~I~p~~--------~~dgKY~vl----psGeL~Ir~v~~~~~   79 (98)
                      +|.+|+|.|.+++.-   ..-.....|.+.     . ..++-..        ...+|....    -+..|.|++++..|.
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            699999999986542   122345566654     1 2232211        112333321    256688888887774


Q ss_pred             Ccceeeeee
Q psy5692          80 NLSVKKMKV   88 (98)
Q Consensus        80 n~~~~~~~~   88 (98)
                        ..=.|.+
T Consensus        81 --G~Y~C~v   87 (106)
T cd05714          81 --GRYRCEV   87 (106)
T ss_pred             --EEEEEEE
Confidence              3344444

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=92.14  E-value=0.3  Score=30.12  Aligned_cols=46  Identities=13%  Similarity=0.177  Sum_probs=30.4

Q ss_pred             cCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEe
Q psy5692          22 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRL   75 (98)
Q Consensus        22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~   75 (98)
                      |.++.|.|..-..-.-   ...|..++..|.+    +.++.+ ..+.|.|.+++
T Consensus         1 G~~v~L~C~a~G~P~P---~v~W~k~g~~l~~----~~~~~~-~~~~L~i~~~~   46 (69)
T cd05739           1 GGSVNLTCVAVGAPMP---YVKWMKGGEELTK----EDEMPV-GRNVLELTNIY   46 (69)
T ss_pred             CCeEEEEEEeeecCCC---EEEEEECCEECCC----ccceec-CccEEEEeccc
Confidence            7889999997433333   3559999966643    234433 45579999875

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=91.97  E-value=0.31  Score=31.82  Aligned_cols=52  Identities=12%  Similarity=0.105  Sum_probs=30.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeee---ecCcCCCceEEEccCccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI---YLNTDTGGKYVVLSSGDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I---~p~~~~dgKY~vlpsGeL~Ir~v~~~   77 (98)
                      .|.+|.+++|+|+.+.   ++. .-.|.+++..-   +......+++..    +++|..++..
T Consensus        11 vV~~G~~VTL~C~~~~---~~~-~f~l~k~g~~~~~~~~~~~~~~~~~a----~f~I~~~~~~   65 (94)
T cd05711          11 VVPSGENVTLQCHSDI---RFD-RFILYKEGRSKPVLHLYEKHHGGFQA----SFPLGPVTPA   65 (94)
T ss_pred             ccCCCCeEEEEEecCC---CCC-EEEEEECCCCCCceecccccCCeEEE----EEEecCCCcc
Confidence            5779999999998663   232 35898887321   111112244444    5666665543

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=91.91  E-value=0.36  Score=32.47  Aligned_cols=69  Identities=13%  Similarity=0.145  Sum_probs=40.0

Q ss_pred             ceeecCeEEEEccCCCC--c-cceeEEeEEccCC-e----ee-e---cC----cCCCceEEEc--c-C--ccEEEEeEee
Q psy5692          18 NVILGNTAVLRCQIPSY--M-SEYIIVTSWIQDD-V----NI-Y---LN----TDTGGKYVVL--S-S--GDLYVQIRLS   76 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~--V-~d~V~V~SW~~Dd-~----~I-~---p~----~~~dgKY~vl--p-s--GeL~Ir~v~~   76 (98)
                      .+..|.+++|.|..+..  . .+-.....|.+.+ .    .+ +   ..    ....|||.++  + .  ..|.|++++.
T Consensus        10 ~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l~~   89 (119)
T cd05712          10 SVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDAQP   89 (119)
T ss_pred             EEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccCCh
Confidence            45689999999965322  1 1112335788765 2    11 1   11    1234798884  2 2  3599999998


Q ss_pred             ecCCcceeeeee
Q psy5692          77 ITGNLSVKKMKV   88 (98)
Q Consensus        77 ~~~n~~~~~~~~   88 (98)
                      .|.  +.=-|.+
T Consensus        90 ~Ds--g~Y~C~~   99 (119)
T cd05712          90 EDS--GKYFFRV   99 (119)
T ss_pred             hhC--eEEEEEE
Confidence            884  4444444

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=91.66  E-value=0.4  Score=30.58  Aligned_cols=51  Identities=18%  Similarity=0.197  Sum_probs=32.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      .|..|.+.+|+|..+.-..  ..-..|.+++..+.. ..        -++.|+|.++..+|.
T Consensus        10 ~V~~G~~vtL~C~~~~~~~--~~~~~w~k~g~~~~~-~~--------~~~~l~I~~~~~~ds   60 (83)
T cd05753          10 VVFEGEPLVLRCHGWKNKP--VYKVTYYRDGKAKKY-SH--------SNSNLSIPQATLSDS   60 (83)
T ss_pred             eecCCCCEEEEeeCCCCCc--ceEEEEEECCeEccc-cC--------CCceEEECccCHHHC
Confidence            5789999999999643211  234679998854421 11        145677777766553

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=91.55  E-value=0.84  Score=28.25  Aligned_cols=59  Identities=12%  Similarity=0.142  Sum_probs=36.6

Q ss_pred             EEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEE-ccCccEEEEeEee--ecCCcceeeeee
Q psy5692          25 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV-LSSGDLYVQIRLS--ITGNLSVKKMKV   88 (98)
Q Consensus        25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~v-lpsGeL~Ir~v~~--~~~n~~~~~~~~   88 (98)
                      ++|.|.+-..-  . -..+|.+|+..|-+.  .++++.+ .++|.|.|+++..  ....+..-.|..
T Consensus         1 i~l~C~~~G~P--~-P~v~W~k~g~~l~~~--~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A   62 (77)
T cd05733           1 IVIKCEAKGNP--P-PTFSWTRNGTHFDPE--KDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYA   62 (77)
T ss_pred             CEEEeeCcccC--C-CeEEEEECCeECCCC--CCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEE
Confidence            46889864321  2 247899998766442  3456666 4689999999854  122334455544

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=91.19  E-value=0.75  Score=30.17  Aligned_cols=56  Identities=16%  Similarity=0.292  Sum_probs=35.2

Q ss_pred             eEEEEccCCCCccceeEEeEEccCC-e----ee---ecCc------CCCceEEEc-----cCccEEEEeEeeecC
Q psy5692          24 TAVLRCQIPSYMSEYIIVTSWIQDD-V----NI---YLNT------DTGGKYVVL-----SSGDLYVQIRLSITG   79 (98)
Q Consensus        24 tAVLkC~IPs~V~d~V~V~SW~~Dd-~----~I---~p~~------~~dgKY~vl-----psGeL~Ir~v~~~~~   79 (98)
                      +|+|.|.+++...+-..-..|.+.. .    .|   ++..      +..||....     -++.|.|+|++.+|.
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~   76 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADE   76 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccc
Confidence            5899999976554556678898853 1    22   2211      122444433     277899999998874

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=91.10  E-value=0.42  Score=31.35  Aligned_cols=64  Identities=17%  Similarity=0.213  Sum_probs=39.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eeee-cC--------cCCCceEEEcc----CccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIY-LN--------TDTGGKYVVLS----SGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I~-p~--------~~~dgKY~vlp----sGeL~Ir~v~~~~~   79 (98)
                      .|-.|.+|.|.|.+..  .  .....|.+..     ..|+ -.        ....+||.+.-    +-.|.|++++.+|.
T Consensus         9 ~v~~G~~v~l~C~~~~--~--~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Ds   84 (110)
T cd05899           9 IKGRGQSVTLRCSQTS--G--HDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDS   84 (110)
T ss_pred             EEcCCCcEEEEEEECC--C--CCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhC
Confidence            4558999999999875  2  2456787753     2222 11        11247888753    23599999988774


Q ss_pred             Ccceeeee
Q psy5692          80 NLSVKKMK   87 (98)
Q Consensus        80 n~~~~~~~   87 (98)
                        ++=-|.
T Consensus        85 --g~Y~Ca   90 (110)
T cd05899          85 --AVYLCA   90 (110)
T ss_pred             --EEEEEE
Confidence              444443

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=91.07  E-value=0.23  Score=30.58  Aligned_cols=53  Identities=11%  Similarity=0.094  Sum_probs=35.6

Q ss_pred             EEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          26 VLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        26 VLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .|.|.+..+-.-   ...|++|+..|.+    +.+| ..+.+.|.|.+++.+|.  ..-.|..
T Consensus         2 ~l~c~v~g~P~p---~v~W~k~g~~l~~----~~~~-~~~~~~L~I~~v~~~D~--G~YtC~a   54 (71)
T cd04976           2 RLPVKVKAYPPP---EIQWYKNGKLISE----KNRT-KKSGHSLTIKDVTEEDA--GNYTVVL   54 (71)
T ss_pred             EEEeEEEEeCCC---EEEEEECCEECCC----CCEE-EcCCCEEEECcCCHHHC--EEEEEEE
Confidence            477887554433   3599999977744    3455 45788999999988875  3344443

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=91.06  E-value=0.9  Score=30.31  Aligned_cols=43  Identities=14%  Similarity=0.339  Sum_probs=28.6

Q ss_pred             eecCeEEEEccCCCC-ccceeEEeEEccCC-eeee-----cCcCCCceEEE
Q psy5692          20 ILGNTAVLRCQIPSY-MSEYIIVTSWIQDD-VNIY-----LNTDTGGKYVV   63 (98)
Q Consensus        20 irGNtAVLkC~IPs~-V~d~V~V~SW~~Dd-~~I~-----p~~~~dgKY~v   63 (98)
                      ..|..|+|.|.+..| -..-+ ..+|.+|+ ..+-     +..+.||-|.+
T Consensus        12 ~~~~~~tLtC~v~gf~yP~~i-~v~W~r~~~~~~~~~~~~~~~~~dgty~~   61 (96)
T cd07696          12 LLTKSVKLTCLVTNLTSPEGV-NVTWTRGSGEPVKASIQPPESHNNATLSV   61 (96)
T ss_pred             ccCCCeEEEEEEeCCCCCCCc-EEEEEECCeEeeeEEecccccCCCCCEEE
Confidence            468899999999988 44444 67899986 3321     12234666665

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=90.99  E-value=0.23  Score=30.98  Aligned_cols=53  Identities=13%  Similarity=0.119  Sum_probs=35.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      .+..|.++.|.|.....  +-.....|.+++..+ |.     + ....+|.|.|.+++.+|.
T Consensus        12 ~v~~G~~v~L~C~~~~~--~~~~~i~W~~~~~~~-~~-----~-~~~~~~~L~I~~v~~~Ds   64 (85)
T cd05754          12 EVRPGADVSFICRAKSK--SPAYTLVWTRVGGGL-PS-----R-AMDFNGILTIRNVQLSDA   64 (85)
T ss_pred             EEcCCCCEEEEEEcCCC--CCCcEEEEEECCCcC-CC-----c-ccccCCEEEECCCCHHHC
Confidence            45689999999997431  112446899987433 31     1 123468899999988775

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=90.92  E-value=0.76  Score=30.33  Aligned_cols=43  Identities=14%  Similarity=0.326  Sum_probs=29.6

Q ss_pred             eecCeEEEEccCCCCccceeEEeEEccCCeeeecC-------cCCCceEEE
Q psy5692          20 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-------TDTGGKYVV   63 (98)
Q Consensus        20 irGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~-------~~~dgKY~v   63 (98)
                      ..|+.++|.|.+..|--.-+. .+|.+|+..+...       .+.||.|.+
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~-v~W~~~g~~~~~~~~~~~~~~~~dgTy~~   61 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEIT-VKWFKNGQEETEGVVSTELIPNGDWTYQI   61 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCE-EEEEECCeecCCCceecceEECCCCcEEE
Confidence            358899999999877665544 5799998654332       134666766

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=90.60  E-value=0.27  Score=29.07  Aligned_cols=53  Identities=11%  Similarity=0.080  Sum_probs=33.3

Q ss_pred             EEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEE-ccCccEEEEeEeeecCCcceeeee
Q psy5692          25 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV-LSSGDLYVQIRLSITGNLSVKKMK   87 (98)
Q Consensus        25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~v-lpsGeL~Ir~v~~~~~n~~~~~~~   87 (98)
                      +.|.|.+..+-.-   ..+|.+++..+.+     ++... ...+.|.|.+++.+|.  ..-.|.
T Consensus         1 v~l~C~~~g~P~p---~v~W~k~~~~~~~-----~~~~~~~~~~~L~i~~v~~~D~--G~Y~C~   54 (71)
T cd05731           1 LLLECIAEGLPTP---EISWIKIGGELPA-----DRTKFENFNKTLKIDNVSEEDD--GEYRCT   54 (71)
T ss_pred             CEEEEEeeEecCC---eEEEEECCeECCC-----CceeEecCCCEEEECCCCHHHC--EEEEEE
Confidence            3688987654433   3799999865532     23333 3467899999988773  234444

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=90.24  E-value=0.45  Score=31.69  Aligned_cols=55  Identities=13%  Similarity=0.137  Sum_probs=38.7

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc---------CccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS---------SGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp---------sGeL~Ir~v~~~~~   79 (98)
                      .+..|-.+.|.|.+-.+-.-   ...|++|+..|..+    .+..+..         .+.|.|.+++.+|.
T Consensus        14 ~~~~~~~~~l~~~v~g~P~P---~v~W~kdg~~l~~~----~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~   77 (101)
T cd05859          14 FANLHEVKEFVVEVEAYPPP---QIRWLKDNRTLIEN----LTEITTSEHNVQETRYVSKLKLIRAKEEDS   77 (101)
T ss_pred             EEecCCcEEEEEEEEEeCCC---ceEEEECCEECcCC----cceEEeccccccceeeccEEEEeeCCHHHC
Confidence            56688999999999665544   57899999777432    2222221         35799999888874

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>PHA02785 IL-beta-binding protein; Provisional

Probab=90.20  E-value=0.52  Score=37.31  Aligned_cols=56  Identities=9%  Similarity=0.105  Sum_probs=40.4

Q ss_pred             ceeecCeEEEEccCC-CCcccee-EEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIP-SYMSEYI-IVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IP-s~V~d~V-~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      .+..|.+|.|.|..+ .|.+... ....|..++. +     .++|+..+++|.|.|.|++.+|+
T Consensus       132 ~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-----~~~r~~~~~~~~L~i~~v~~~d~  189 (326)
T PHA02785        132 IVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-----RNKRLKQRTPGIITIEDVRKNDA  189 (326)
T ss_pred             eecccCcEEEECCChhhcccCCCCceEEEccCCc-c-----CCcceEecCCCeEEEeecChhhC
Confidence            456889999999743 3333222 4678976542 1     35799999999999999998876

>KOG4221|consensus

Probab=90.15  E-value=0.28  Score=46.85  Aligned_cols=69  Identities=19%  Similarity=0.346  Sum_probs=50.1

Q ss_pred             eEEEEeeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCc
Q psy5692           9 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNL   81 (98)
Q Consensus         9 Yev~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~   81 (98)
                      +.+-++-+ -+|+|.+++|-|. +-+.........|-.|...+  +..+|.+-..||+|.|||.++..-..|.
T Consensus        42 ~~f~~ep~-d~~~~~svlLecs-~~~~~~~~~~i~wkkDg~~l--~e~~d~~~~~LsNgSl~i~~v~~~kh~~  110 (1381)
T KOG4221|consen   42 LQFLLEPS-DAMEGSSVLLECS-AYAAGGTSVKIEWKKDGSQL--NEVYDDRRQLLSNGSLYISSVLASKHNK  110 (1381)
T ss_pred             ceEEeccc-ccccccceEEecc-ccccCCCCeeEEEccCchhh--hhhhhhHHhhccCCceeEeeeccccccc
Confidence            33444444 4599999999999 55555467778899998433  2235688899999999999998865554

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=90.01  E-value=0.23  Score=31.96  Aligned_cols=33  Identities=24%  Similarity=0.248  Sum_probs=23.1

Q ss_pred             EeeeeceeecCeEEEEccCCCCccceeEEeEEccCCe
Q psy5692          13 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDV   49 (98)
Q Consensus        13 V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~   49 (98)
                      ++-+..|..|.+++|+|.-+....    ...|++++.
T Consensus         7 a~p~~vV~~G~~VtL~C~~~~~~~----~f~l~k~g~   39 (91)
T cd05751           7 AEPSSVVPLGKPVTLRCQGPYGAV----EYRLYREGS   39 (91)
T ss_pred             ecCCCccCCCCcEEEEEecCCCCC----EEEEEECCC
Confidence            333347889999999999874433    347887763

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=89.90  E-value=1.5  Score=27.45  Aligned_cols=60  Identities=8%  Similarity=0.127  Sum_probs=38.3

Q ss_pred             EEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEE-ccCccEEEEeEeee--cCCcceeeeeeh
Q psy5692          25 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV-LSSGDLYVQIRLSI--TGNLSVKKMKVE   89 (98)
Q Consensus        25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~v-lpsGeL~Ir~v~~~--~~n~~~~~~~~~   89 (98)
                      .+|.|.+-.+-   .-...|.+++..|..  ..+++|.+ .++|.|.|.++...  +.....-+|...
T Consensus         1 ~~l~C~~~G~P---~P~v~W~k~g~~~~~--~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~   63 (77)
T cd05875           1 IIIECEAKGNP---VPTFQWTRNGKFFNV--AKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFAR   63 (77)
T ss_pred             CEEEEeccccC---CCEEEEEECCEEccC--cCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEE
Confidence            36889875442   334689999865422  23677877 47999999987532  122356677654

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=89.47  E-value=0.8  Score=27.28  Aligned_cols=59  Identities=15%  Similarity=0.257  Sum_probs=35.4

Q ss_pred             EEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEE---ccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          26 VLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV---LSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        26 VLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~v---lpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      +|.|.+..+-..  ....|++++..|..+... ..+.+   ...+.|.|.++..+|.  ..-.|..+
T Consensus         2 ~l~C~~~g~~P~--p~~~W~k~g~~l~~~~~~-~~~~~~~~~~~~~L~I~~~~~~D~--G~Y~C~a~   63 (75)
T cd05750           2 VLKCEATSEYPS--LRFKWFKDGKELNRKNKP-RNIKIRNKKKNSELQINKAKLADS--GEYTCVVE   63 (75)
T ss_pred             EEEEEccCCCCC--ceEEEEcCCeeccccCCc-ceEEEEecCceEEEEEccCCcccC--eEEEEEEE
Confidence            689998752222  355899998766442211 11222   2357899999988775  34555543

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=89.32  E-value=1.6  Score=29.18  Aligned_cols=58  Identities=19%  Similarity=0.254  Sum_probs=37.5

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCCeeeec------CcCCCceEEEc------c-CccEEEEeEeee
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYL------NTDTGGKYVVL------S-SGDLYVQIRLSI   77 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p------~~~~dgKY~vl------p-sGeL~Ir~v~~~   77 (98)
                      +-.|+.++|.|.+-.|----+ -.+|.+|+..+..      ..+.||.|.+.      | +|+.|-..|+-+
T Consensus        12 ~~~g~~~~L~C~a~gFyP~~i-~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~   82 (93)
T cd05770          12 AENGKPNVLNCYVTGFHPPDI-EIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN   82 (93)
T ss_pred             CcCCCceEEEEEEEEEeCCCC-EEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence            346788899999976554444 4579999855421      11457888862      2 577777666553

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=89.25  E-value=0.43  Score=32.17  Aligned_cols=30  Identities=13%  Similarity=0.422  Sum_probs=23.7

Q ss_pred             ecCeEEEEccCCCCccceeEEeEEccCCeee
Q psy5692          21 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI   51 (98)
Q Consensus        21 rGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I   51 (98)
                      .|+.|+|.|.+-.|--.-++| +|.+|...+
T Consensus        15 ~~~~~tL~C~a~gFyP~~I~v-~W~kng~~~   44 (96)
T cd07697          15 KQGQGIYLCLLENFFPDVIQV-HWREGNSPS   44 (96)
T ss_pred             cCCCEEEEEEEEEEeCCCeEE-EEEECCEEC
Confidence            578999999998777776554 799998554

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=89.15  E-value=1.5  Score=28.78  Aligned_cols=60  Identities=12%  Similarity=0.207  Sum_probs=36.3

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCC------eeeecCc---------CCCceEEEccC-----ccEEEEeEeeec
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIYLNT---------DTGGKYVVLSS-----GDLYVQIRLSIT   78 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd------~~I~p~~---------~~dgKY~vlps-----GeL~Ir~v~~~~   78 (98)
                      +-.|.++.|.|.++.. ..--...+|.+..      ..++...         ...+||.+..+     ..|-|++++.+|
T Consensus        10 ~~~G~~v~l~C~~~~~-~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~D   88 (116)
T cd04982          10 REESKSVTISCKVSGI-DFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEKED   88 (116)
T ss_pred             eCCCCCEEEEEEEeCC-CccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCHHH
Confidence            3479999999998642 1112367787752      1122211         12578887633     358888888866


Q ss_pred             C
Q psy5692          79 G   79 (98)
Q Consensus        79 ~   79 (98)
                      .
T Consensus        89 s   89 (116)
T cd04982          89 S   89 (116)
T ss_pred             C
Confidence            3

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=88.90  E-value=0.76  Score=35.15  Aligned_cols=59  Identities=17%  Similarity=0.331  Sum_probs=34.4

Q ss_pred             ceeecCeEEEEccC---CC-------CccceeEEeEEccCCee-eecCc-CC-------CceEEEccCccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQI---PS-------YMSEYIIVTSWIQDDVN-IYLNT-DT-------GGKYVVLSSGDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~I---Ps-------~V~d~V~V~SW~~Dd~~-I~p~~-~~-------dgKY~vlpsGeL~Ir~v~~~~   78 (98)
                      .|..|.+|+|+|.+   |+       |+.+|  -..|.+++.. ++... ..       ..++. .++|.|.|++++.+|
T Consensus        33 ~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~--~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~-~r~~~L~I~~v~~~D  109 (227)
T PHA02826         33 YAKFGDPMVLLCTGKHYKKSIFFDKTFITSY--NVTWSKTDSLAFVRDSGARTKIKKITHNEIG-DRSENLWIGNVINID  109 (227)
T ss_pred             EecCCCCEEEEccccccccccccccccCCCc--cEEEEeCCeEEEEEcCCCcccccccccccee-cCCCeEEECCCChHH
Confidence            67899999999995   21       12222  3449988832 22211 00       12221 246788888887776


Q ss_pred             C
Q psy5692          79 G   79 (98)
Q Consensus        79 ~   79 (98)
                      .
T Consensus       110 s  110 (227)
T PHA02826        110 E  110 (227)
T ss_pred             C
Confidence            5

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=88.36  E-value=1.3  Score=30.47  Aligned_cols=67  Identities=13%  Similarity=0.157  Sum_probs=41.8

Q ss_pred             ecCeEEEEccCCCCccce---------eEEeEEccCC----eeeec--------CcCCCceEEEcc------CccEEEEe
Q psy5692          21 LGNTAVLRCQIPSYMSEY---------IIVTSWIQDD----VNIYL--------NTDTGGKYVVLS------SGDLYVQI   73 (98)
Q Consensus        21 rGNtAVLkC~IPs~V~d~---------V~V~SW~~Dd----~~I~p--------~~~~dgKY~vlp------sGeL~Ir~   73 (98)
                      .|.+++|.|.+.....+-         .....|.+-.    ..++-        ..+..+|+.+..      +.-|.|+|
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            489999999987444321         2345577531    22221        123456888742      67799999


Q ss_pred             EeeecCCcceeeeeeh
Q psy5692          74 RLSITGNLSVKKMKVE   89 (98)
Q Consensus        74 v~~~~~n~~~~~~~~~   89 (98)
                      ++..|.  +.=.|.+.
T Consensus        81 l~~sDs--G~Y~C~V~   94 (112)
T cd05900          81 LRSNDS--GTYRCEVM   94 (112)
T ss_pred             cccccC--EEEEEEEe
Confidence            999885  56666654

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=88.12  E-value=0.99  Score=27.24  Aligned_cols=56  Identities=14%  Similarity=0.234  Sum_probs=37.4

Q ss_pred             EEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc---CccEEEEeEeeecCCcceeeeeeh
Q psy5692          25 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS---SGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp---sGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      ..|.|.+-..-.-   ...|.+++..|.+    ++++.+..   .+.|.|.+++..|.-  .-+|..+
T Consensus         2 ~~l~c~~~G~P~p---~v~W~k~g~~l~~----~~~~~~~~~~~~~~L~I~~~~~~D~G--~Y~C~a~   60 (74)
T cd05748           2 VRLEVPISGRPTP---TVTWSKDGKPLKL----SGRVQIETTASSTSLVIKNAERSDSG--KYTLTLK   60 (74)
T ss_pred             EEEEeeEeeeCCC---eEEEEECCEEcCC----CCeEEEEECCCeEEEEECCCCcCcCE--EEEEEEE
Confidence            5688877433222   4789999976633    56777764   457999999877754  4566554

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>KOG3513|consensus

Probab=87.69  E-value=0.93  Score=42.54  Aligned_cols=59  Identities=17%  Similarity=0.314  Sum_probs=45.0

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCC
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGN   80 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n   80 (98)
                      |..|-.++|.|.=|..--+  ...+|+..++.-+.. ....|+.+..+|.||+.+|..+|..
T Consensus       148 v~eG~~~~L~C~pP~~~P~--l~~~W~~~~~~~~~~-~~~~r~~~~~~G~Lyfs~V~~~D~~  206 (1051)
T KOG3513|consen  148 VEEGDGVVLPCNPPAHFPP--LRYYWMLNEFPHFVQ-IDNRRVFSQENGNLYFSNVETSDFG  206 (1051)
T ss_pred             EEeCCceEEeCCCCCCCCC--ccEEehhccCCcccc-cCcceeEecccceEEEeecchhhcC
Confidence            4578899999996666655  677999998332331 1235888899999999999999984

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=86.19  E-value=2.9  Score=28.08  Aligned_cols=54  Identities=22%  Similarity=0.333  Sum_probs=35.1

Q ss_pred             eEEEEccCCCCccceeEEeEEccCC----eee--ecCc-------CCCceEEEcc----CccEEEEeEeeecC
Q psy5692          24 TAVLRCQIPSYMSEYIIVTSWIQDD----VNI--YLNT-------DTGGKYVVLS----SGDLYVQIRLSITG   79 (98)
Q Consensus        24 tAVLkC~IPs~V~d~V~V~SW~~Dd----~~I--~p~~-------~~dgKY~vlp----sGeL~Ir~v~~~~~   79 (98)
                      .+.|.|..|.  ...+.-++|.+-+    ..|  |...       ...||-..+.    ++.|.|+||+.+|.
T Consensus         2 ~vtL~C~~~~--~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~   72 (96)
T cd05889           2 KMKLECVYPK--TGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDV   72 (96)
T ss_pred             CEEEEeEcCC--CCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccC
Confidence            5789999885  4568888898853    133  3111       2235555542    58899999988875

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=85.85  E-value=4  Score=25.13  Aligned_cols=61  Identities=10%  Similarity=0.044  Sum_probs=32.5

Q ss_pred             EEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEe----Eee-ecCCcceeeeeehH
Q psy5692          25 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQI----RLS-ITGNLSVKKMKVEE   90 (98)
Q Consensus        25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~----v~~-~~~n~~~~~~~~~~   90 (98)
                      +.|.|.+..|-..  ...+|.+++..|..   ....-.++|+|.++..-    +.. ...+...-.|.++-
T Consensus         2 ~~L~C~v~g~~P~--~~v~W~~~g~~l~~---~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n   67 (82)
T cd05759           2 YNLTCRARGAKPA--AEIIWFRDGEVLDG---ATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARN   67 (82)
T ss_pred             EEEEEEEeCccCC--CEEEEEECCEEccC---ceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcC
Confidence            5799998755222  36899999876532   11122344555432211    112 22344677787753

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=85.56  E-value=4.6  Score=25.14  Aligned_cols=59  Identities=17%  Similarity=0.265  Sum_probs=36.6

Q ss_pred             EEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc-CccEEEEeEeeecC--Ccceeeeeeh
Q psy5692          26 VLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS-SGDLYVQIRLSITG--NLSVKKMKVE   89 (98)
Q Consensus        26 VLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp-sGeL~Ir~v~~~~~--n~~~~~~~~~   89 (98)
                      .|.|.+-..  .. -..+|.+++..+.+  ..++++.+.+ +|.|.|+.+...+.  ....-.|...
T Consensus         2 ~l~C~a~G~--P~-P~i~W~k~g~~l~~--~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~   63 (77)
T cd05874           2 VIQCEAKGK--PP-PSFSWTRNGTHFDI--DKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTAR   63 (77)
T ss_pred             EEEeeCccc--CC-CeEEEEECCeECCC--cCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEE
Confidence            578876322  22 23599999865522  2345677665 79999988876642  3456666543

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=85.27  E-value=2.1  Score=28.26  Aligned_cols=58  Identities=17%  Similarity=0.251  Sum_probs=35.0

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCC-----eeeec---C--cCCCceEEEc--cC-c--cEEEEeEeeec
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYL---N--TDTGGKYVVL--SS-G--DLYVQIRLSIT   78 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I~p---~--~~~dgKY~vl--ps-G--eL~Ir~v~~~~   78 (98)
                      |-.|.++.|.|.+++....  .-..|.+-.     ..|+-   .  ....+||.+.  ++ +  .|-|.+++.+|
T Consensus        11 ~~~G~~v~L~C~~~~~~~~--~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~D   83 (116)
T cd07706          11 VQVGEEVTLNCRYETSWTN--YYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLED   83 (116)
T ss_pred             EcCCCCEEEEEEEeCCCCc--eEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHH
Confidence            4589999999997643322  456677642     22221   1  1235789885  22 2  47777877665

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd00098 IgC Immunoglobulin Constant domain

Probab=85.01  E-value=3.1  Score=25.85  Aligned_cols=30  Identities=20%  Similarity=0.615  Sum_probs=21.5

Q ss_pred             ecCeEEEEccCCCCccceeEEeEEccCCeee
Q psy5692          21 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI   51 (98)
Q Consensus        21 rGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I   51 (98)
                      .|+.+.|.|.+..|--+ ..-.+|.+|+..+
T Consensus        12 ~~~~~~L~C~a~g~~P~-~~~i~W~~~g~~~   41 (95)
T cd00098          12 LGGSVTLTCLATGFYPP-DITVTWLKNGKEL   41 (95)
T ss_pred             cCCCeEEEEEEeeEECC-CcEEEEEECCEEC
Confidence            68999999998733211 2357899998655

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=83.94  E-value=1  Score=28.05  Aligned_cols=64  Identities=13%  Similarity=0.057  Sum_probs=33.8

Q ss_pred             cCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEE-Ec---cCccEEEEeEeeecCCcceeeeee
Q psy5692          22 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYV-VL---SSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~-vl---psGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      |.++.|.|.+...-. -..-..|......+........+.. ..   ..+.|.|++++..|.  ..=.|..
T Consensus         1 Ge~~~L~C~~~g~~~-~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~Ds--G~Y~C~a   68 (84)
T cd05742           1 GETLVLNCTVLTELN-EGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDS--GTYTCAA   68 (84)
T ss_pred             CCeEEEEEEEEeCCC-ccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhC--EEEEEEE
Confidence            778999999864311 2234678765532211000011111 11   246899999987764  4444544

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=83.80  E-value=3.2  Score=27.80  Aligned_cols=31  Identities=26%  Similarity=0.557  Sum_probs=23.2

Q ss_pred             eecCeEEEEccCCCCccceeEEeEEccCCeee
Q psy5692          20 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI   51 (98)
Q Consensus        20 irGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I   51 (98)
                      ..|..|.|.|.+..|--.- ...+|.+|+..+
T Consensus        14 ~~~~~~tL~C~a~gFyP~~-i~v~W~k~g~~~   44 (102)
T cd05768          14 SLQETATLTCLVKGFSPSD-IFVKWLQNGQPL   44 (102)
T ss_pred             CcCCceEEEEEEeeEeCCC-CEEEEEECCEEC
Confidence            4578999999998765543 456899998544

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=83.29  E-value=3.8  Score=27.57  Aligned_cols=54  Identities=19%  Similarity=0.234  Sum_probs=35.3

Q ss_pred             eEEEEccCCCCccceeEEeEEccCC----eee--ec---C----cCCCceEEEc----cCccEEEEeEeeecC
Q psy5692          24 TAVLRCQIPSYMSEYIIVTSWIQDD----VNI--YL---N----TDTGGKYVVL----SSGDLYVQIRLSITG   79 (98)
Q Consensus        24 tAVLkC~IPs~V~d~V~V~SW~~Dd----~~I--~p---~----~~~dgKY~vl----psGeL~Ir~v~~~~~   79 (98)
                      .+.|.|.++.  .+.+.-.+|.+.+    ..|  |.   +    ....||-...    -++.|.|+|++.+|.
T Consensus         2 ~vtL~C~~~~--~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~   72 (96)
T cd05887           2 NVTLKCRIQV--NETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDI   72 (96)
T ss_pred             CEEEEEEecC--CCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCcccc
Confidence            5899999874  3467788897642    233  21   1    1234555552    378999999999886

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=83.27  E-value=2.4  Score=27.84  Aligned_cols=59  Identities=15%  Similarity=0.154  Sum_probs=33.5

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCCee---------eecC-cC--------CCceEEE--ccCc---cEEEEeEe
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVN---------IYLN-TD--------TGGKYVV--LSSG---DLYVQIRL   75 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~---------I~p~-~~--------~dgKY~v--lpsG---eL~Ir~v~   75 (98)
                      |-.|.+|.|.|.+...-  ......|.+-...         ++-+ ..        ..+||.+  .+++   -|.|.+++
T Consensus         3 v~~G~~vtL~C~~~~~~--~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   80 (107)
T cd07700           3 VQTNNTVKLSCEAKGIS--ENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVK   80 (107)
T ss_pred             EcCCCCEEEEEEEecCC--CCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCC
Confidence            44799999999965321  2236678765411         1111 10        1357765  3333   38888887


Q ss_pred             eecC
Q psy5692          76 SITG   79 (98)
Q Consensus        76 ~~~~   79 (98)
                      .+|.
T Consensus        81 ~~Ds   84 (107)
T cd07700          81 PEDS   84 (107)
T ss_pred             HHHC
Confidence            7763

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=82.35  E-value=2.3  Score=29.11  Aligned_cols=44  Identities=27%  Similarity=0.484  Sum_probs=30.0

Q ss_pred             eecCeEEEEccCCCCc-cceeEEeEEccCCe--ee--ecCcCCCceEEEc
Q psy5692          20 ILGNTAVLRCQIPSYM-SEYIIVTSWIQDDV--NI--YLNTDTGGKYVVL   64 (98)
Q Consensus        20 irGNtAVLkC~IPs~V-~d~V~V~SW~~Dd~--~I--~p~~~~dgKY~vl   64 (98)
                      +.|.+|.|.|.|..|- -+-+ ..+|.+|+.  ..  .|..+.||.|.+.
T Consensus        17 ~~~~~atLtClV~~f~~P~~i-~V~W~~~g~~~~~~t~~~~~~dgTys~~   65 (99)
T cd04986          17 LLGSSASLTCTLSGLRDPEGA-VFTWTPSGGKEAVQTSAESDQCGCYSVS   65 (99)
T ss_pred             CcCCccEEEEEEeccCCCCCe-EEEEEECCccCcEEcCcccCCCCCEEEE
Confidence            3678999999999776 5445 589999962  11  1233557777763

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=82.30  E-value=5.6  Score=27.21  Aligned_cols=33  Identities=12%  Similarity=0.426  Sum_probs=24.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI   51 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I   51 (98)
                      ..+.|..++|.|.+..|--.-+ ...|.+|+..+
T Consensus        17 ~~~~g~~~tL~C~a~gF~P~~i-~v~W~kng~~~   49 (111)
T cd05772          17 RANPGQSVNFTCSAHGFSPRDI-TVKWLKNGNEL   49 (111)
T ss_pred             ccCCCCCEEEEEEEeeEeCCCC-EEEEEECCEEC
Confidence            4557888999999986654433 45799998665

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=81.55  E-value=3.6  Score=27.22  Aligned_cols=30  Identities=20%  Similarity=0.492  Sum_probs=23.9

Q ss_pred             ecCeEEEEccCCCCccceeEEeEEccCCeee
Q psy5692          21 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI   51 (98)
Q Consensus        21 rGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I   51 (98)
                      .|+.+.|.|.+..|-..-+. .+|.+|+..+
T Consensus        16 ~~~~~~L~C~~~gfyP~~i~-v~W~~~g~~~   45 (100)
T cd07699          16 KSGKATLVCLINDFYPGFAT-VQWKVDGATV   45 (100)
T ss_pred             cCCCcEEEEEEEeEECCCCE-EEEEECCEEC
Confidence            57889999999887765554 7899998655

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=81.14  E-value=8.7  Score=24.09  Aligned_cols=61  Identities=11%  Similarity=0.075  Sum_probs=33.5

Q ss_pred             EEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEE-EEe---Eeee-cCCcceeeeeehHH
Q psy5692          25 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLY-VQI---RLSI-TGNLSVKKMKVEEE   91 (98)
Q Consensus        25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~-Ir~---v~~~-~~n~~~~~~~~~~~   91 (98)
                      +.|.|.+..+--.  .-.+|.+++..|..    .......|+|.+| +..   +... .+|.+...|.++-+
T Consensus         2 ~~L~C~~~~~~P~--~~v~W~~~~~~l~~----~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~   67 (82)
T cd05761           2 VELTCTSSGSKPA--ATIRWFKGDKELKG----VKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHP   67 (82)
T ss_pred             EEEEEEecCcCcC--CeEEEEECCEEccC----ceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeCh
Confidence            6899998655333  38899999866632    1133333333332 221   1222 23447788877643

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=81.08  E-value=4.7  Score=26.53  Aligned_cols=58  Identities=19%  Similarity=0.248  Sum_probs=33.4

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCC-e-------eeecCc--------C--CCceEEEcc---CccEEEEeEeee
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD-V-------NIYLNT--------D--TGGKYVVLS---SGDLYVQIRLSI   77 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-~-------~I~p~~--------~--~dgKY~vlp---sGeL~Ir~v~~~   77 (98)
                      |-.|.++.|.|.+... ..  ....|.+-+ .       .++-..        +  ..+||.+..   +..|.|.+++.+
T Consensus         3 v~~G~~vtL~C~~~~~-~~--~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~s   79 (104)
T cd05720           3 AELGQKVELKCEVLNS-SP--TGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKE   79 (104)
T ss_pred             ccCCCeEEEEEEecCC-CC--CcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHH
Confidence            4579999999986433 22  235676654 2       111111        0  145777643   234888888876


Q ss_pred             cC
Q psy5692          78 TG   79 (98)
Q Consensus        78 ~~   79 (98)
                      |.
T Consensus        80 Ds   81 (104)
T cd05720          80 NE   81 (104)
T ss_pred             HC
Confidence            64

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=80.27  E-value=10  Score=24.19  Aligned_cols=25  Identities=24%  Similarity=0.452  Sum_probs=19.9

Q ss_pred             EEEEccCCCCccceeEEeEEccCCeee
Q psy5692          25 AVLRCQIPSYMSEYIIVTSWIQDDVNI   51 (98)
Q Consensus        25 AVLkC~IPs~V~d~V~V~SW~~Dd~~I   51 (98)
                      +.|.|.+..|--. . ..+|.+++..|
T Consensus         2 ~~LtC~a~g~~P~-~-~ItW~k~g~~l   26 (83)
T cd07705           2 AKLRCTSSGSKPA-A-NIKWRKGDQEL   26 (83)
T ss_pred             EEEEEEecCccCC-C-EeEEEECCEEC
Confidence            6899999877555 3 77999998665

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=80.20  E-value=5  Score=26.71  Aligned_cols=42  Identities=14%  Similarity=0.388  Sum_probs=27.9

Q ss_pred             ecCeEEEEccCCCCccceeEEeEEccCCeeeec-------CcCCCceEEE
Q psy5692          21 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYL-------NTDTGGKYVV   63 (98)
Q Consensus        21 rGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p-------~~~~dgKY~v   63 (98)
                      .|..++|.|++..|--.-|. ..|.+|+..+..       ..+.||.|.+
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~-v~W~~~g~~~~~~~~~~~~~~~~Dgty~~   62 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLN-VTWLKNGVPVTDGVSETRYYPRQDLSFQK   62 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCE-EEEEECCeEccCceEEeeeEeCCCCcEEE
Confidence            35568999999877665554 479999855422       1235677776

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	98
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		6e-12
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		6e-12
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		8e-12
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		8e-10

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 50/70 (71%), Gaps = 2/70 (2%)
Query: 4   VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD-DVNIYLNTDTGGKYV 62
           VV Q YE +VN EH VI GN+AV++C IPS++++++ V SW  D + N +   +  GKY+
Sbjct: 107 VVAQYYEADVNKEH-VIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYL 165
Query: 63  VLSSGDLYVQ 72
           VL SG+L+++
Sbjct: 166 VLPSGELHIR 175

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 50/70 (71%), Gaps = 2/70 (2%)
Query: 4   VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD-DVNIYLNTDTGGKYV 62
           VV Q YE +VN EH VI GN+AV++C IPS++++++ V SW  D + N +   +  GKY+
Sbjct: 101 VVAQYYEADVNKEH-VIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYL 159
Query: 63  VLSSGDLYVQ 72
           VL SG+L+++
Sbjct: 160 VLPSGELHIR 169

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 50/70 (71%), Gaps = 2/70 (2%)
Query: 4   VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD-DVNIYLNTDTGGKYV 62
           VV Q YE +VN EH VI GN+AV++C IPS++++++ V SW  D + N +   +  GKY+
Sbjct: 136 VVAQYYEADVNKEH-VIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYL 194
Query: 63  VLSSGDLYVQ 72
           VL SG+L+++
Sbjct: 195 VLPSGELHIR 204

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 49/72 (68%), Gaps = 4/72 (5%)
Query: 4   VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLN--TDTGGK 60
           VV Q YE   + E+ VI GN+ V++C+IPSY+++++ V  W+  +  N Y N   +T GK
Sbjct: 101 VVIQSYESEADNEY-VIRGNSVVMKCEIPSYVADFVFVDLWLDSEGRNYYPNNAAETDGK 159
Query: 61  YVVLSSGDLYVQ 72
           Y+VL SG+L+++
Sbjct: 160 YLVLPSGELHIR 171

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	98
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	6e-10
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-08
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	4e-07
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	9e-07
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	6e-06
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-04

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 53.0 bits (127), Expect = 6e-10
 Identities = 23/55 (41%), Positives = 40/55 (72%), Gaps = 1/55 (1%)

Query: 19  VILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYVVLSSGDLYVQ 72
           VI GN+AV++C IPS++++++ V SW  D+  N +   +  GKY+VL SG+L+++
Sbjct: 115 VIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIR 169

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 48.4 bits (115), Expect = 3e-08
 Identities = 23/55 (41%), Positives = 40/55 (72%), Gaps = 1/55 (1%)

Query: 19  VILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYVVLSSGDLYVQ 72
           VI GN+AV++C IPS++++++ V SW  D+  N +   +  GKY+VL SG+L+++
Sbjct: 150 VIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIR 204

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 45.2 bits (107), Expect = 4e-07
 Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 19  VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQ 72
           +  G   +  C  P +         W+ ++   ++  D G ++V  ++G+LY+ 
Sbjct: 113 ITEGWGVMFTCSPPPHYPALSY--RWLLNEFPNFIPAD-GRRFVSQTTGNLYIA 163

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 44.1 bits (104), Expect = 9e-07
 Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 4   VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV 63
              + ++       +V  G   VL C  P +  E     +WI ++   Y +     ++V 
Sbjct: 99  AYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSY--AWIFNEYPSYQD---NRRFVS 153

Query: 64  LSSGDLYVQ 72
             +G+LY+ 
Sbjct: 154 QETGNLYIA 162

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 41.8 bits (98), Expect = 6e-06
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLY 70
          V  G   VL C  P +  + +    W+ ++  +++  D   ++V  ++G+LY
Sbjct: 20 VKEGKGMVLLCDPPYHFPDDLSYR-WLLNEFPVFITMD-KRRFVSQTNGNLY 69

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 37.6 bits (87), Expect = 2e-04
 Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 5/57 (8%)

Query: 19  VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDT---GGKYVVLSSGDLYVQ 72
            I G    L C +P+   + +I  +W +       N D      +      G+LY  
Sbjct: 112 PIEGRPFQLDCVLPNAYPKPLI--TWKKRLSGADPNADVTDFDRRITAGPDGNLYFT 166

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	98
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	98.88
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	98.19
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	98.19
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	97.94
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	97.8
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	97.77
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	97.7
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	97.69
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	97.69
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	97.67
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	97.67
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	97.65
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	97.62
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	97.6
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	97.59
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	97.59
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	97.56
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	97.54
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	97.53
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	97.49
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	97.45
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	97.43
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	97.41
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	97.39
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	97.38
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	97.37
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	97.35
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	97.33
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	97.33
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	97.29
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	97.28
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	97.27
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	97.24
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	97.22
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	97.21
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	97.2
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	97.2
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	97.2
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	97.19
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	97.16
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	97.16
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	97.15
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	97.14
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	97.11
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	97.1
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	97.1
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	97.09
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	97.09
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	97.07
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	97.07
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	97.06
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	97.05
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	97.05
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	97.03
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	97.03
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	97.02
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	96.98
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	96.95
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	96.94
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	96.89
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	96.87
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	96.87
3khq_A	133	B-cell antigen receptor complex-associated protei	96.87
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	96.87
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	96.87
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	96.86
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	96.82
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	96.8
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	96.76
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	96.75
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	96.74
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	96.73
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	96.73
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	96.73
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	96.71
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	96.67
2pkd_A	111	SLAM family member 5; signaling lymphocyte activat	96.65
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	96.65
3noi_A	120	Natural cytotoxicity triggering receptor 3; immune	96.64
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	96.6
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	96.56
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	96.55
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	96.54
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	96.52
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	96.49
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	96.49
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	96.48
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	96.47
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	96.46
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	96.46
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	96.45
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	96.45
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	96.44
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	96.44
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	96.43
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	96.42
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	96.42
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	96.42
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	96.41
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	96.4
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	96.4
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	96.4
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	96.38
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	96.34
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	96.34
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	96.33
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	96.33
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	96.33
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	96.32
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	96.3
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	96.3
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	96.29
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	96.29
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	96.24
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	96.23
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	96.21
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	96.21
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	96.21
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	96.2
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	96.19
1xt5_A	135	Variable region-containing chitin-binding protein	96.16
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	96.16
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	96.15
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	96.11
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	96.1
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	96.1
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	96.09
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	96.06
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	96.05
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	96.04
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	96.03
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	96.03
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	96.03
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	96.02
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	96.02
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	96.01
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	96.01
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	96.01
1nko_A	132	Sialic acid binding IG-like lectin 7; immunoglobul	96.01
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	96.0
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	95.92
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	95.9
1qfo_A	119	Protein (sialoadhesin); immunoglobulin superfamily	95.87
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	95.86
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	95.86
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	95.85
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	95.85
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	95.84
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	95.83
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	95.82
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	95.79
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	95.78
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	95.78
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	95.77
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	95.76
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	95.75
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	95.74
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	95.74
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	95.73
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	95.72
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	95.71
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	95.7
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	95.7
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	95.7
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	95.7
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	95.69
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	95.68
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	95.67
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	95.67
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	95.67
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	95.66
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	95.66
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	95.65
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	95.64
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	95.64
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	95.63
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	95.62
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	95.59
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	95.55
2ens_A	96	Advanced glycosylation END product-specific recept	95.54
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	95.52
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	95.51
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	95.51
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	95.5
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	95.48
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	95.48
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	95.46
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	95.44
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	95.44
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	95.43
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	95.42
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	95.41
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	95.4
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	95.4
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	95.4
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	95.4
3ux9_B	256	SCFV antibody; five helices, long loop connecting	95.39
1fo0_B	112	Protein (BM3.3 T cell receptor beta-chain); class	95.39
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	95.39
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	95.37
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	95.36
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	95.34
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	95.31
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	95.3
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	95.3
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	95.29
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	95.29
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	95.28
2otu_A	115	FV light chain variable domain; antibody FV polygl	95.24
1u3h_A	110	T-cell receptor alpha-chain; complex, immune syste	94.24
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	95.23
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	95.22
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	95.22
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	95.19
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	95.18
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	95.16
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	95.13
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	95.13
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	95.13
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	95.12
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	95.11
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	95.1
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	95.09
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	95.06
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	95.06
2qhl_A	111	Novel immune-type receptor 10; immunoglobulin vari	95.06
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	95.05
3sob_L	237	Antibody light chain; beta propeller, protein bind	95.03
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	95.02
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	95.0
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	95.0
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	94.99
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	94.98
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	94.97
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	94.95
3umt_A	256	SCFV heavy chain and light chain; stability engine	94.94
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	94.9
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	94.9
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	94.88
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	94.87
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	94.87
1oaq_L	120	Light chain; antibody, allergy, IGE, conformationa	94.86
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	94.85
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	94.83
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	94.82
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	94.82
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	94.81
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	94.8
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	94.79
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	94.79
2atp_B	115	T-cell surface glycoprotein CD8 beta chain; CD8AB,	94.79
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	94.78
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	94.77
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	94.75
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	94.73
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	94.72
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	94.72
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	94.71
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	94.71
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	94.7
3bj9_1	116	Immunoglobulin IOTA chain, immunoglobulin lambda-	94.69
1eeq_A	114	Kappa-4 immunoglobulin (light chain); protein stab	94.68
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	94.67
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	94.66
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	94.65
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	94.64
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	94.62
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	94.62
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	94.61
3umt_A	256	SCFV heavy chain and light chain; stability engine	94.6
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	94.6
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	94.59
2i24_N	121	NEW antigen receptor PBLA8; immunoglobulin fold, i	94.59
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	94.58
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	94.57
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	94.57
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	94.55
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	94.54
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	94.54
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	94.53
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	94.47
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	94.47
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	94.47
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	94.46
2pnd_A	119	V-SET and immunoglobulin domain containing 4; comp	94.42
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	94.41
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	94.4
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	94.4
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	94.39
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	94.39
3ux9_B	256	SCFV antibody; five helices, long loop connecting	94.39
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	94.38
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	94.37
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	94.36
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	94.33
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	94.32
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	94.32
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	94.31
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	94.31
2yz1_A	120	Tyrosine-protein phosphatase non-receptor type sub	94.29
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	94.29
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	94.27
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	94.23
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	94.22
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	94.21
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	94.2
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	94.2
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	94.19
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	94.18
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	94.18
1c5d_H	215	Monoclonal antibody against the main immunogenic t	94.16
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	94.14
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	94.12
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	94.06
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	94.05
3u6r_L	143	Antibody 1:7 (light chain); IG-like domain, neutra	94.04
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	94.02
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	93.98
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	93.97
2hp4_A	114	T-cell surface glycoprotein CD8 alpha chain; CO-re	93.97
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	93.97
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	93.93
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	93.9
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	93.86
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	93.85
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	93.81
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	93.8
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	93.79
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	93.77
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	93.76
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	93.75
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	93.74
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	93.74
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	93.74
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	93.72
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	93.71
1fo0_A	116	Protein (BM3.3 T cell receptor alpha-chain); class	93.7
2z35_A	112	T-cell receptor alpha-chain; immune receptor, immu	93.67
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	93.65
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	93.64
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	93.64
3t0v_A	123	Immunoglobulin variable lambda domain; immunoglobu	93.62
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	93.6
2h32_A	126	Immunoglobulin IOTA chain; beta sheets, V and C-ty	93.59
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	93.58
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	93.49
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	93.48
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	93.47
1p4b_L	135	Antibody variable light chain; FV antibody, antige	93.44
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	93.44
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	93.42
1tvd_A	116	T cell receptor, ES204 V delta; immunoreceptor, TC	93.37
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	93.33
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	93.31
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	93.29
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	93.2
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	93.17
2wzp_D	123	Camelid VHH5; baseplate, viral protein; 2.60A {Lam	93.12
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	93.11
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	93.11
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	93.1
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	93.09
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	93.09
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	93.07
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	93.02
3kg5_A	134	B-cell antigen receptor complex-associated protei	93.02
1dlf_L	113	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	92.99
1sjv_A	114	R9; camelids antibody, domain swapping, heavy chai	92.99
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	92.98
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	92.98
2bnu_A	203	TCR alpha chain, T-cell receptor alpha chain C reg	92.97
2nms_A	124	CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP4	92.96
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	92.92
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	92.92
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	92.89
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	92.88
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	92.88
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	92.86
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	92.83
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	92.82
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	92.81
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	92.75
3bdb_A	137	Novel immune-type receptor 11; immunoglobulin vari	92.73
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	92.72
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	92.68
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	92.68
1a2y_B	116	IGG1-kappa D1.3 FV (heavy chain); complex (immunog	92.65
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	92.59
3bp6_A	117	Programmed cell death protein 1; PD-1, PD-L2, comp	92.58
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	92.57
1j05_H	121	T84.66 antibody, anti-CEA MAB T84.66, heavy chain;	92.43
1hkf_A	122	NKP44, NK cell activating receptor; natural cytoto	92.38
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	92.34
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	92.32
3bia_X	116	T-cell immunoglobulin and mucin domain- containing	92.31
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	92.29
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	92.27
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	92.22
2ol3_A	142	BM3.3 T-cell receptor alpha-chain; T cell receptor	92.18
1kgc_D	206	T-cell receptor alpha chain; LC13 clone, immune sy	92.17
3rrq_A	129	Protein PD-1, programmed cell death protein 1; pro	92.16
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	92.12
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	92.11
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	92.08
2p45_B	123	Antibody CAB-RN05; seMet phasing, camelid single-d	92.03
2nw2_A	200	ELS4 TCR alpha chain; T cell receptor, immune syst	92.02
2oi9_C	121	V beta, T cell receptor beta chain; TCR, MHC, immu	92.01
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	91.98
2xt1_B	121	Camelid VHH 9; viral protein-immune system complex	91.96
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	91.94
1n4x_H	120	Immunoglobulin heavy chain variable region; immune	91.92
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	91.89
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	91.85
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	91.71
2yc1_A	117	Single chain antibody fragment 9004G; immune syste	91.71
1bii_B	119	Beta-2 microglobulin, MHC class I H-2DD; complex (	91.71
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	91.69
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	91.65
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	91.57
2eys_A	210	NKT15; natural killer T cell receptor, immune syst	91.56
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	91.54
1kxv_C	121	Camelid VHH domain CAB10; beta 8 alpha 8, beta bar	91.52
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	91.51
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	91.45
3oai_A	507	Maltose-binding periplasmic protein, myelin prote;	91.44
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	91.42
1lp9_E	194	T-cell receptor alpha chain; immunoregulatory comp	91.36
3c6l_A	185	TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus	90.69
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	91.29
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	91.28
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	91.24
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	91.19
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	91.18
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	91.15
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	91.14
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	91.13
3b9v_A	120	Heavy chain variable domain; antibody engineering,	91.0
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	90.94
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	90.87
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	90.86
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	90.82
1zvh_A	134	Immunoglobulin heavy chain antibody variable domai	90.78
3bik_B	134	Programmed cell death protein 1; CO-stimulation, r	90.78
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	90.78
2x1q_A	127	Gelsolin nanobody; contractIle protein; 1.06A {Lam	90.72
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	90.68
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	90.6
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	90.55
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	90.49
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	90.43
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	90.41
1xiw_D	122	Immunoglobulin heavy chain variable region; CD3-ep	90.4
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	90.4
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	90.38
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	90.37
3qjh_A	205	5C.C7 alpha chain; immunoglobulin domain, T cell r	90.32
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	90.32
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	90.3
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	90.11
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	90.07
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	90.05
1mfa_H	120	IGG1-lambda Se155-4 FAB (heavy chain); immunoglobu	89.99
3osk_A	130	Cytotoxic T-lymphocyte protein 4; beta sandwich, h	89.98
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	89.93
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	89.84
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	89.83
2q86_A	229	Valpha14 TCR; INKT cells, TCR, glycolipid recognit	89.78
1mqk_H	127	Antibody 7E2 FV fragment, heavy chain; membrane pr	89.72
1ymm_D	207	T cell receptor alpha chain; protein-protein compl	89.63
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	89.63
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	89.57
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	89.55
1kxt_B	127	Immunoglobulin VHH fragment; alpha 8 beta 8, beta	89.52
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	89.46
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	89.41
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	89.3
2ak4_D	211	SB27 T cell receptor alpha chain; bulged epitopes,	89.25
1oga_D	215	T-cell receptor alpha chain V region, beta-2-micro	89.25
3cx5_J	127	Heavy chain (VH) of FV-fragment; complex III, elec	89.17
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	89.12
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	89.1
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	89.06
1xed_A	117	Polymeric-immunoglobulin receptor; IG-like fold, i	88.97
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	88.91
1rjc_A	137	1D2L19, camelid heavy chain antibody; beta sandwic	88.87
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	88.8
1i3u_A	127	Antibody VHH LAMA domain; VHH fragment, immune sys	88.73
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	88.71
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	88.6
1nez_G	128	T-cell surface glycoprotein CD8 alpha chain; immun	88.57
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	88.43
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	88.36
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	88.32
1yc7_A	124	Anti-VSG immunoglobulin heavy chain variable domai	88.31
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	88.31
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	88.15
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	88.09
3dmm_C	166	T-cell surface glycoprotein CD8 alpha chain; T cel	88.04
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	87.95
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	87.8

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=98.88  E-value=4.6e-10  Score=90.71  Aligned_cols=77  Identities=42%  Similarity=0.723  Sum_probs=64.3

Q ss_pred             cceeeeceEEEEeeeeceeecCeEEEEccCCCCccceeEEeEEccCC-eeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692           2 LPVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus         2 rAVV~Q~Yev~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      ++++.+.|+...... .|+.|++|+|.|.+|++..+.+...+|++++ ..+.+....+|||.++++|.|+|++++.+|+
T Consensus       134 ~~~~~~~~~~~~~~~-~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~  211 (816)
T 3dmk_A          134 RAVVAQYYEADVNKE-HVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDG  211 (816)
T ss_dssp             EEECCCCCCCBCCCE-EEETTSCEEECCBCCHHHHTTEEEEEEEETTSCEECBSSCBTTTEEECTTSCEEESSCCGGGS
T ss_pred             EEEEccccEEEEecc-eEecCceEEEEECCCccccccEEEEEEEecCceEeccccCCCceEEEecCceEEEecCChhhc
Confidence            344556666666777 8999999999999998888888899999998 4444655678999999999999999999995

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=98.19  E-value=4.2e-06  Score=55.33  Aligned_cols=65  Identities=18%  Similarity=0.319  Sum_probs=48.0

Q ss_pred             EEEeeeeceeecCeEEEEcc-CCCCccceeEEeEEccCCe-----eee----------cCcCCCceEEEccCccEEEEeE
Q psy5692          11 INVNYEHNVILGNTAVLRCQ-IPSYMSEYIIVTSWIQDDV-----NIY----------LNTDTGGKYVVLSSGDLYVQIR   74 (98)
Q Consensus        11 v~V~d~~~VirGNtAVLkC~-IPs~V~d~V~V~SW~~Dd~-----~I~----------p~~~~dgKY~vlpsGeL~Ir~v   74 (98)
                      ++.... .|..|..|+|.|+ .|.   + ....+|.+.+.     .|.          +.....||+.++|+|.|.|+||
T Consensus         5 i~~~p~-~~~~G~~v~L~~~~~p~---~-~~~i~W~kg~~~~~~~~I~~y~~~~~~~~~~~~~~gR~~~~~ngSL~I~nv   79 (111)
T 2qsq_A            5 IESTPF-NVAEGKEVLLLVHNLPQ---H-LFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNI   79 (111)
T ss_dssp             EEEESS-EEETTSCEEEEEESCCS---S-EEEEEEEESSSCCGGGEEEEEETTTTEEEECTTCCSCEEECTTSCEEECSC
T ss_pred             EEeccc-eeccCCCEEEEEeCCCC---C-ceEEEEEeCCCCCCCcEEEEEECCCcceecCcccCCcEEEecCCcEEEccC
Confidence            334444 7889999999997 563   3 66789988762     221          2223579999999999999999


Q ss_pred             eeecCC
Q psy5692          75 LSITGN   80 (98)
Q Consensus        75 ~~~~~n   80 (98)
                      +.+|.-
T Consensus        80 t~~D~G   85 (111)
T 2qsq_A           80 IQNDAG   85 (111)
T ss_dssp             CGGGCE
T ss_pred             cccCCe
Confidence            988864

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=98.19  E-value=1e-06  Score=64.14  Aligned_cols=65  Identities=38%  Similarity=0.722  Sum_probs=54.2

Q ss_pred             eeeeceeecCeEEEEccCCCCccceeEEeEEccCCeee-ecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692          14 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI-YLNTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        14 ~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I-~p~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      ... .+..|.+++|.|.++.+-.+......|.+++..+ .+....++||.+.++|.|.|++++.+|.
T Consensus       111 ~~~-~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  176 (388)
T 2v5m_A          111 NKE-HVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDG  176 (388)
T ss_dssp             CCE-EEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEECTTSCEEESSCCGGGG
T ss_pred             cce-eeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEEccCCcEEEecCCcccc
Confidence            344 6789999999999998877777889999999444 4444568999999999999999999885

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=97.94  E-value=7.5e-06  Score=50.51  Aligned_cols=54  Identities=26%  Similarity=0.420  Sum_probs=44.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCcc---EEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGe---L~Ir~v~~~~~   79 (98)
                      .|..|.++.|.|.+...-..    ..|.+++..|.+    ++||.+..+|.   |.|++++.+|.
T Consensus        19 ~v~~G~~v~l~C~~~~~p~~----v~W~k~~~~l~~----~~~~~~~~~~~~~~L~I~~v~~~D~   75 (103)
T 2e7b_A           19 EVLEGGAATLRCVLSSVAAP----VKWCYGNNVLRP----GDKYSLRQEGAMLELVVRNLRPQDS   75 (103)
T ss_dssp             EEESSSCEEEEEECSSCCCS----CEEEESSSBCCC----SSSEEEEECSSEEEEEECSCCTTTC
T ss_pred             EEECCCcEEEEEEEeCCCCC----eEEEECCEECCC----CCcEEEEEcCCEEEEEEccCCcccC
Confidence            57789999999998755444    789999876643    57999999997   99999998775

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=97.80  E-value=2.6e-05  Score=52.86  Aligned_cols=60  Identities=17%  Similarity=0.180  Sum_probs=43.9

Q ss_pred             ceeecCeEEEEc-cCCCCccceeEEeEEccCCeeee------cCcCCCceEEEccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRC-QIPSYMSEYIIVTSWIQDDVNIY------LNTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC-~IPs~V~d~V~V~SW~~Dd~~I~------p~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      .++.|.+++|.| .+|.  ..-.....|.+++..|.      +....++||.++++|.|.|++++.+|.
T Consensus         7 ~~~~G~~v~L~c~~~~~--~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~   73 (176)
T 1hng_A            7 WGALGHGINLNIPNFQM--TDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDS   73 (176)
T ss_dssp             EEETTSCEEECCTTCCC--CTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGC
T ss_pred             EEEcCCcEEEcCCCCCc--ccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccC
Confidence            467999999999 4441  12344678999985443      111247899999999999999998875

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=97.77  E-value=1.6e-05  Score=49.98  Aligned_cols=57  Identities=12%  Similarity=0.132  Sum_probs=44.5

Q ss_pred             eeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCc---cEEEEeEeeecC
Q psy5692          14 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVQIRLSITG   79 (98)
Q Consensus        14 ~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG---eL~Ir~v~~~~~   79 (98)
                      .+. .|..|.+|.|.|.+...  .  ....|++|+..|.+    ++||.+..+|   .|.|++++.+|.
T Consensus        13 ~~~-~v~~G~~v~l~C~v~~~--~--~~v~W~k~g~~i~~----~~~~~i~~~g~~~~L~I~~v~~~D~   72 (93)
T 1waa_A           13 YGV-EVFVGETAHFEIELSEP--D--VHGQWKLKGQPLAA----SPDCEIIEDGKKHILILHNCQLGMT   72 (93)
T ss_dssp             CCE-EEETTSCEEEEEEESSS--S--CCCEEEETTEECCC----BTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             cce-EEeCCCCEEEEEEECCC--C--CeEEEEECCEECcC----CCCEEEEEECCEEEEEECCCChhhC
Confidence            344 67799999999998532  2  24789999987765    5789888877   699999998874

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=97.70  E-value=4.4e-05  Score=49.53  Aligned_cols=68  Identities=13%  Similarity=0.119  Sum_probs=48.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeee--e-cC------cCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI--Y-LN------TDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I--~-p~------~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+..|.+|+|.|.+... ..-.....|.+++..+  | +.      ....||+.+.+++.|.|++++.+|.  ..=.|.+
T Consensus        14 ~~~~G~~v~L~C~~~~~-~~~~~~v~W~k~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~--G~Y~C~v   90 (117)
T 3q0h_A           14 SAEKGGSIILQCHLSST-TAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVNDT--GEYFCIY   90 (117)
T ss_dssp             EEETTCCEEECEEEESC-CCEEEEEEEEETTEEEEEEETTTEEECCGGGTTTEEECSTTCEEECSCCGGGC--EEEEEEE
T ss_pred             EEecCCCEEEEEEecCC-CCCEEEEEEEeCCEEEEEEECCCCceeCccccCcEEeCCceEEEEeeCChhhC--EEEEEEE
Confidence            56789999999998654 3345578999987322  3 11      1236899888899999999998884  3344443

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.69  E-value=5.4e-05  Score=47.76  Aligned_cols=63  Identities=17%  Similarity=0.149  Sum_probs=47.7

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .|..|.++.|.|.+..+-.   ....|.+++..|..   .+++|.+..+|.|.|++++.+|.  ..-.|..
T Consensus        19 ~v~~G~~v~l~C~~~g~p~---p~i~W~k~g~~~~~---~~~~~~~~~~~~L~i~~v~~~D~--G~Y~C~a   81 (118)
T 2eo9_A           19 TVAVDGTFVLSCVATGSPV---PTILWRKDGVLVST---QDSRIKQLENGVLQIRYAKLGDT--GRYTCIA   81 (118)
T ss_dssp             EEETTCEEEEECBCCCSSC---CEEEEEESSSBCCT---TSTTEEEEETTEEEEESCCGGGC--CCEEEEE
T ss_pred             EEcCCCeEEEEEEEEecCC---CEEEEEECCEECcC---CCCeEEEccCCEEEEccCCcCCC--EEEEEEE
Confidence            5678999999999854333   34789999866643   46899999999999999998874  3344543

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=97.69  E-value=4.7e-05  Score=48.67  Aligned_cols=62  Identities=19%  Similarity=0.286  Sum_probs=43.0

Q ss_pred             ceeecCeEEEEccCCCCccc-eeEEeEEccCC-------eeee-c--------CcCCCceEEEccCc-------------
Q psy5692          18 NVILGNTAVLRCQIPSYMSE-YIIVTSWIQDD-------VNIY-L--------NTDTGGKYVVLSSG-------------   67 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d-~V~V~SW~~Dd-------~~I~-p--------~~~~dgKY~vlpsG-------------   67 (98)
                      .+..|.+|+|.|.+.+.... -.....|.+.+       ..+| +        .....||+.+.+++             
T Consensus        13 ~~~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~g~~~~~~~~~   92 (128)
T 3r0n_A           13 RGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQSTGQDTEAELQD   92 (128)
T ss_dssp             ECCTTSCEEECCEEESCCTTCEEEEEEEECTTSCGGGCEEEEEETTTEEECCSSSSCGGGEEESSCBCCCSTTCCCBCSB
T ss_pred             EEEcCCCEEEEEEeecCCCCCcEEEEEEEEeCCCCCCeeEEEEecccCcccccccccCCcEEEeccccccccccccCCCC
Confidence            56789999999998654433 55567899862       1222 1        01245899887765             


Q ss_pred             -cEEEEeEeeecC
Q psy5692          68 -DLYVQIRLSITG   79 (98)
Q Consensus        68 -eL~Ir~v~~~~~   79 (98)
                       .|.|++++.+|.
T Consensus        93 ~sL~I~~v~~~D~  105 (128)
T 3r0n_A           93 ATLALHGLTVEDE  105 (128)
T ss_dssp             CCEEECSCCGGGC
T ss_pred             eEEEEccCCchhC
Confidence             899999999885

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.67  E-value=2.1e-05  Score=49.79  Aligned_cols=53  Identities=25%  Similarity=0.451  Sum_probs=41.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCc---cEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG---eL~Ir~v~~~~~   79 (98)
                      .|..|.+|.|.|.+  .  .-.. ..|++|+..|.+    ++||.+..+|   .|.|++++.+|.
T Consensus        18 ~v~~G~~v~l~C~v--~--p~p~-v~W~k~g~~l~~----~~r~~i~~~~~~~~L~I~~v~~~D~   73 (100)
T 2yuz_A           18 TVNLGKEICLKCEI--S--ENIP-GKWTKNGLPVQE----SDRLKVVQKGRIHKLVIANALTEDE   73 (100)
T ss_dssp             EEETTSCCCEEEEC--S--SCCC-EEEEETTEECCC----CSSEEEEECSSEEEEEESSCCGGGC
T ss_pred             EEcCCCCEEEEEEe--C--CCCe-EEEEECCEECCC----CCcEEEEEeCCEEEEEECCCChhhC
Confidence            56789999999998  1  2222 469999987755    6799998887   599999998874

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.67  E-value=3.9e-05  Score=46.83  Aligned_cols=63  Identities=14%  Similarity=0.217  Sum_probs=47.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+..|.++.|.|.+...-.-   ...|.+++..+..   .+++|.+..+|.|.|++++.+|.  ..-.|.+
T Consensus        19 ~v~~G~~~~l~C~~~g~p~p---~v~W~~~~~~~~~---~~~~~~~~~~~~L~i~~v~~~d~--G~Y~C~a   81 (100)
T 2edj_A           19 TLAVDGTALLKCKATGDPLP---VISWLKEGFTFPG---RDPRATIQEQGTLQIKNLRISDT--GTYTCVA   81 (100)
T ss_dssp             EEESSSEEEECCEEECSSCC---EEEEEESSSEESS---SCSSCEECTTCCEEEESCCTTTC--CEEEEEE
T ss_pred             EEcCCCcEEEEEEEEEcCCC---EEEEEECCEECCC---CCCCEEEcCCCEEEEccCCcccC--EEEEEEE
Confidence            56789999999997543332   3789999866643   46789999999999999998774  3345544

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.65  E-value=2.9e-05  Score=51.86  Aligned_cols=64  Identities=19%  Similarity=0.317  Sum_probs=48.5

Q ss_pred             EEEeeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCc-------eEEEccCc---cEEEEeEeeecCC
Q psy5692          11 INVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGG-------KYVVLSSG---DLYVQIRLSITGN   80 (98)
Q Consensus        11 v~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dg-------KY~vlpsG---eL~Ir~v~~~~~n   80 (98)
                      ...+|. .|..|.+|+|.|.+..     ..-..|++|+..|.++. ..+       ||.+...|   .|.|++++.+|.=
T Consensus        13 ~~l~d~-~v~eG~~a~f~C~vs~-----~p~v~W~knG~~l~~~~-~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~G   85 (112)
T 2e6q_A           13 AGLEDV-QVYDGEDAVFSLDLST-----IIQGTWFLNGEELKSNE-PEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSG   85 (112)
T ss_dssp             ECCCCE-EEETTCEEEEEEEESS-----CCCCEEEESSCBCCSSC-CCTTSCTTSCEEEECCBTTEEEEEEESCCSTTCS
T ss_pred             cCCCCe-EEcCCCcEEEEEEECC-----CCeEEEEECCEECccCc-ccccccccccEEEEEeCCcEEEEEECCCCHHHCc
Confidence            334566 7889999999999874     22366999998886631 123       99999888   6999999988764


Q ss_pred             c
Q psy5692          81 L   81 (98)
Q Consensus        81 ~   81 (98)
                      .
T Consensus        86 ~   86 (112)
T 2e6q_A           86 A   86 (112)
T ss_dssp             E
T ss_pred             c
Confidence            3

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=97.62  E-value=2.8e-05  Score=48.74  Aligned_cols=63  Identities=19%  Similarity=0.298  Sum_probs=47.6

Q ss_pred             eeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCc---cEEEEeEeeecCCcceeeeee
Q psy5692          14 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        14 ~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG---eL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+. .+..|.++.|.|.+...     ....|.+++..|.+    ++||.+..+|   .|.|++++.+|.-  .-.|..
T Consensus        27 ~~~-~v~~G~~v~l~C~~~~~-----p~v~W~k~~~~l~~----~~~~~~~~~~~~~~L~I~~v~~~D~G--~Y~C~a   92 (113)
T 2edh_A           27 RNE-EATEGATAVLRCELSKM-----APVEWWKGHETLRD----GDRHSLRQDGARCELQIRGLVAEDAG--EYLCMC   92 (113)
T ss_dssp             CCC-EECTTSCEEEEEEESSC-----CCCEEEESSSBCCC----SSSEEEEEETTEEEEEECSCCSTTCE--EEEEEE
T ss_pred             Cce-EEeCCCeEEEEEEECCC-----CcEEEEECCEECCC----CCcEEEEECCCEEEEEECCCChhhCE--EEEEEe
Confidence            444 67889999999998653     23579999976644    5899999999   7999999987753  344443

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.60  E-value=4.7e-05  Score=46.83  Aligned_cols=54  Identities=19%  Similarity=0.239  Sum_probs=42.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCc---cEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG---eL~Ir~v~~~~~   79 (98)
                      .|..|.+++|.|.+. .-..   ...|.+++..|.+    +.||.+..+|   .|.|++++.+|.
T Consensus        19 ~v~~G~~v~l~C~~~-~p~~---~v~W~k~~~~l~~----~~~~~~~~~~~~~~L~I~~v~~~D~   75 (103)
T 2dku_A           19 QVEEKGTAVFTCKTE-HPAA---TVTWRKGLLELRA----SGKHQPSQEGLTLRLTISALEKADS   75 (103)
T ss_dssp             EEETTSEEEEEEECS-SCCS---CCEEEESSCBCCS----SSSEEEEEETTEEEEEEESCCTTTC
T ss_pred             EEeCCCcEEEEEEeC-CCCC---eEEEEeCCEECCC----CCeEEEEeCCCEEEEEECCCCcccC
Confidence            577899999999953 2222   4579999977654    5699998888   799999998775

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.59  E-value=1.8e-05  Score=50.20  Aligned_cols=59  Identities=12%  Similarity=0.200  Sum_probs=44.6

Q ss_pred             eeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCc---cEEEEeEeeecC
Q psy5692          14 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVQIRLSITG   79 (98)
Q Consensus        14 ~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG---eL~Ir~v~~~~~   79 (98)
                      .+. .|..|.+|.|.|.+...-..  ....|++|+..|.+    ++||.+..+|   .|.|++++.+|.
T Consensus        16 ~~~-~v~~G~~v~l~C~v~~~~~~--~~v~W~k~g~~i~~----~~r~~~~~~~~~~~L~I~~v~~~D~   77 (104)
T 2eny_A           16 KTM-EVLEGESCSFECVLSHESAS--DPAMWTVGGKTVGS----SSRFQATRQGRKYILVVREAAPSDA   77 (104)
T ss_dssp             CCE-EEESSCCEEEEEECSSCCCS--SCBCCBSSSSBCSB----CSSCEEEEETTEEEEEECSCCTTTC
T ss_pred             CCc-EEcCCCcEEEEEEEcCCCCC--ceeEEEECCEECCC----CCCEEEEEcCCEEEEEECCCCHHHC
Confidence            344 67799999999998644322  13569999977765    5689888777   599999998875

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=97.59  E-value=2e-05  Score=48.91  Aligned_cols=53  Identities=21%  Similarity=0.389  Sum_probs=42.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCcc---EEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGe---L~Ir~v~~~~~   79 (98)
                      .+..|.++.|.|.+...     ....|.+++..|.+    ++||.+..+|.   |.|++++.+|.
T Consensus        19 ~v~~G~~v~l~C~~~~~-----p~v~W~k~~~~~~~----~~~~~~~~~~~~~~L~I~~v~~~D~   74 (108)
T 2dm7_A           19 EASEGATATLQCELSKV-----APVEWKKGPETLRD----GGRYSLKQDGTRCELQIHDLSVADA   74 (108)
T ss_dssp             EEETTSCEEEEEEBSSS-----CCCEEESSSSBCCS----SSSCEEEEETTEEEEEESSCCTTTC
T ss_pred             EEeCCCcEEEEEEeCCC-----CeeEEEECCEECCC----CCCEEEEecCCEEEEEECCCCcccC
Confidence            57789999999998644     23579999876643    68999999998   99999998874

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=97.56  E-value=6.3e-05  Score=49.43  Aligned_cols=69  Identities=13%  Similarity=0.117  Sum_probs=46.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-eeeec-----------CcCCCceEEEc----------cCccEEEEeEe
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYL-----------NTDTGGKYVVL----------SSGDLYVQIRL   75 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-~~I~p-----------~~~~dgKY~vl----------psGeL~Ir~v~   75 (98)
                      .+..|.+|+|.|.+.....+.+....|.+++ ..+..           .....+++...          .+|.|.|++++
T Consensus        12 ~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~   91 (225)
T 4fmk_A           12 RGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRGLR   91 (225)
T ss_dssp             EEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECSCC
T ss_pred             EEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEccCC
Confidence            3568999999999877777777778999987 33211           11123444443          24679999999


Q ss_pred             eecCCcceeeeee
Q psy5692          76 SITGNLSVKKMKV   88 (98)
Q Consensus        76 ~~~~n~~~~~~~~   88 (98)
                      .+|+  ..-.|.+
T Consensus        92 ~~D~--G~Y~C~~  102 (225)
T 4fmk_A           92 VEDE--GNYTCEF  102 (225)
T ss_dssp             GGGC--EEEEEEE
T ss_pred             HHHC--cceEEEE
Confidence            8874  4455554

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.54  E-value=2.6e-05  Score=48.52  Aligned_cols=57  Identities=14%  Similarity=0.246  Sum_probs=44.2

Q ss_pred             eeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCc---cEEEEeEeeecC
Q psy5692          14 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVQIRLSITG   79 (98)
Q Consensus        14 ~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG---eL~Ir~v~~~~~   79 (98)
                      .+. .|..|.++.|.|.+...-.   . ..|++++..|.+    +++|.+..+|   .|.|++++.+|.
T Consensus        16 ~~~-~v~~G~~v~l~C~~~~~~~---~-v~W~k~g~~~~~----~~~~~~~~~~~~~~L~I~~v~~~D~   75 (106)
T 2dlt_A           16 ADL-TVKAAEQAVFKCEVSDEKV---T-GKWYKNGVEVRP----SKRITISHVGRFHKLVIDDVRPEDE   75 (106)
T ss_dssp             CCE-EEESSCCEECCCEESCSSC---E-EEEEESSCBCCC----CSSCEEEEETTEEEEEESSCCTTTC
T ss_pred             CCe-EEeCCCeEEEEEEEcCCCc---c-eEEEcCCEECcC----CCCEEEEEeCCEEEEEECCCCcCCC
Confidence            344 6789999999999864332   3 789999977654    5688888777   899999988775

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=97.53  E-value=9.1e-05  Score=46.15  Aligned_cols=61  Identities=16%  Similarity=0.102  Sum_probs=44.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCc---cEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG---eL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+..|.++.|.|.+.. -.  . -..|++|+..|.+    +++|.+...|   .|.|++++.+|.  ..-.|..
T Consensus         7 ~~~~G~~v~l~C~vs~-p~--p-~v~W~k~g~~l~~----~~~~~~~~~~~~~~L~I~~~~~~D~--G~Y~C~a   70 (84)
T 2lu7_A            7 RSTPGGDLELVVHLSG-PG--G-PVRWYKDGERLAS----QGRVQLEQAGARQVLRVQGARSGDA--GEYLCDA   70 (84)
T ss_dssp             EECTTSCEEEECCCSC-CS--T-TCEEEETTEECCC----CSSEEEEECSSCEEEEESSCSSTTC--EEEEEEC
T ss_pred             EEecCCCEEEEEEECC-CC--c-EEEEEECCEEccc----cccEEEeecCCeEEEEecCCCCccc--EEEEEEE
Confidence            4568999999999843 11  1 2479999988865    6788888776   499999988764  3445544

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=97.49  E-value=0.00014  Score=44.19  Aligned_cols=52  Identities=21%  Similarity=0.313  Sum_probs=40.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      .+..|.++.|.|.+..   +  ....|.+++..+.+    ++++.+ .+|.|.|.+++.+|.
T Consensus        12 ~v~~G~~~~l~C~~~~---~--p~v~W~k~g~~~~~----~~~~~~-~~~~L~i~~~~~~D~   63 (95)
T 4hwu_A           12 VVAPGESLELQCMLKD---A--AVISWTKDGVHLGP----NNRTVL-IGEYLQIKGATPRDS   63 (95)
T ss_dssp             EECTTSCEEEECCCCT---T--CEEEEEETTEEECC----CSSEEE-ETTEEEECSCCGGGC
T ss_pred             EECCCCEEEEEEEeCC---C--CEEEEEECCEECCC----CceEEE-eCCEEEECcCCcccC
Confidence            6789999999999864   1  35789999977744    467776 478999999988774

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=97.45  E-value=0.00014  Score=44.19  Aligned_cols=69  Identities=13%  Similarity=0.185  Sum_probs=47.1

Q ss_pred             eeeeceeecCeEEEEccCCCCccceeEEeEEccCCe-eeecCc---CCCceEEEc----cCccEEEEeEeeecCCcceee
Q psy5692          14 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDV-NIYLNT---DTGGKYVVL----SSGDLYVQIRLSITGNLSVKK   85 (98)
Q Consensus        14 ~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~-~I~p~~---~~dgKY~vl----psGeL~Ir~v~~~~~n~~~~~   85 (98)
                      .+. .|..|.+|+|.|.+...-   .....|.+++. .++...   ..++||.+.    .++.|.|++++.+|.  ..-.
T Consensus        14 ~~~-~v~~G~~v~L~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~--G~Y~   87 (108)
T 3m45_A           14 QNV-TVVEGGTAILTCRVDQND---NTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDE--GQYT   87 (108)
T ss_dssp             CCE-EEETTSCEEEEEEESSCS---SCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGC--EEEE
T ss_pred             Cee-EEEeCCcEEEEeEEcCCC---ccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHC--eEEE
Confidence            344 677999999999986543   23358999874 554322   146799886    467899999998874  3334


Q ss_pred             eee
Q psy5692          86 MKV   88 (98)
Q Consensus        86 ~~~   88 (98)
                      |.+
T Consensus        88 C~~   90 (108)
T 3m45_A           88 CSL   90 (108)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=97.43  E-value=4.6e-05  Score=46.69  Aligned_cols=54  Identities=20%  Similarity=0.304  Sum_probs=41.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCc---cEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG---eL~Ir~v~~~~~   79 (98)
                      .|..|.++.|.|.+ +.-.   ....|++++..|.+    +++|.+..+|   .|.|++++.+|.
T Consensus        19 ~v~~G~~v~l~C~~-~~p~---~~v~W~k~~~~l~~----~~~~~~~~~~~~~~L~I~~v~~~D~   75 (95)
T 2k1m_A           19 EVAAGSPAVFEAET-ERAG---VKVRWQRGGSDISA----SNKYGLATEGTRHTLTVREVGPADQ   75 (95)
T ss_dssp             EEETTSCEEEEEEC-SSSS---CCCEEECSSSEECS----STTCEEEEETTEEEEEESSCCTTCC
T ss_pred             EEeCCCcEEEEEEe-CCCC---CeEEEEECCEECCC----CCcEEEEEcCCEEEEEEcCCCcccC
Confidence            67799999999998 3222   24689999977755    4688888777   499999988764

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=97.41  E-value=0.00028  Score=45.07  Aligned_cols=63  Identities=13%  Similarity=0.238  Sum_probs=46.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCc----cEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG----DLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG----eL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .|..|.++.|.|.+...-..   ...|.+++..+.+   .++||.+..+|    .|.|++++.+|.  ..-.|.+
T Consensus        26 ~v~~G~~v~L~C~~~g~p~p---~v~W~k~~~~~~~---~~~~~~~~~~~~~~~~L~I~~v~~~D~--G~Y~C~a   92 (116)
T 2kkq_A           26 KVLEGDSVKLECQISAIPPP---KLFWKRNNEMVQF---NTDRISLYQDNTGRVTLLIKDVNKKDA--GWYTVSA   92 (116)
T ss_dssp             EEETTEEEEEEEEBCCBSCC---EEEEEETTEECCC---CBTTEEEEECTTCEEEEEEEEECGGGC--EEEEEEE
T ss_pred             EEeCCCcEEEEEEEeccCCC---EEEEEECCEECcC---CCCeEEEEeCCCCeEEEEECCCCcccC--EEEEEEE
Confidence            67789999999998654333   5789999976644   35788888765    699999998874  3344443

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=97.39  E-value=0.0001  Score=46.83  Aligned_cols=62  Identities=19%  Similarity=0.316  Sum_probs=45.0

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCc---cEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG---eL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .|..|.++.|.|.+ +.-.   ....|++++..|.+   .++||.+..+|   .|.|++++.+|.  ..-.|.+
T Consensus        27 ~v~~G~~v~L~C~~-~~p~---~~v~W~k~g~~l~~---~~~~~~~~~~~~~~~L~I~~v~~~D~--G~Y~C~a   91 (104)
T 1pd6_A           27 QVSKGHKIRLTVEL-ADHD---AEVKWLKNGQEIQM---SGSKYIFESIGAKRTLTISQCSLADD--AAYQCVV   91 (104)
T ss_dssp             EEETTSCEEEEEEC-SSSS---SCCEEEESSSEECC---CSSSSEEEEETTEEEEEECSCSSSSC--EEEEEEE
T ss_pred             EEecCCCEEEEEEE-cCCC---CEEEEEECCEECCC---CCCeEEEEecCCEEEEEECCCCcccC--EEEEEEE
Confidence            46789999999998 3221   12689999977755   23799988888   899999988775  3334444

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=97.38  E-value=0.00022  Score=43.74  Aligned_cols=62  Identities=13%  Similarity=0.239  Sum_probs=42.7

Q ss_pred             ceeecCeEEEEccC-CCCccce-eEEeEEccCC----eeeecCc-----CCCceEEEcc--------CccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQI-PSYMSEY-IIVTSWIQDD----VNIYLNT-----DTGGKYVVLS--------SGDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~I-Ps~V~d~-V~V~SW~~Dd----~~I~p~~-----~~dgKY~vlp--------sGeL~Ir~v~~~~   78 (98)
                      .+..|.+|+|.|.+ ++..... .....|.+++    ..+|...     ...+|+.+.+        ++.|.|++++.+|
T Consensus        11 ~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~~D   90 (118)
T 3udw_C           11 PGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVED   90 (118)
T ss_dssp             EEETTSCEEECCEEECCTTCCCEEEEEEEEETTCSBCSEEEETTTEEEETTCSSEEETTCCTTSCCCBCCEEECSCCGGG
T ss_pred             EEeeCCcEEEEEEeECCCCCCCceEEEEEEEcCCCceEEEEeCCCCCccCCcCcEEEecccccCCCCCcEEEEeecChHH
Confidence            45689999999998 5443333 5567899874    2222111     1267888877        7799999999887


Q ss_pred             C
Q psy5692          79 G   79 (98)
Q Consensus        79 ~   79 (98)
                      .
T Consensus        91 ~   91 (118)
T 3udw_C           91 E   91 (118)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=97.37  E-value=8.4e-05  Score=46.94  Aligned_cols=60  Identities=15%  Similarity=0.249  Sum_probs=44.0

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCc---cEEEEeEeeecCCcceeeeee
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG---eL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      ++.|.+++|.|.+..-  + .. ..|++|+..|.+    +++|.+..+|   .|.|++++.+|.  ..-.|..
T Consensus        18 ~~~g~~v~l~C~v~~p--~-~~-v~W~k~g~~i~~----~~~~~i~~~~~~~~L~I~~v~~~D~--G~Y~C~a   80 (91)
T 2lvc_A           18 AITSECVMLACEVDRE--D-AP-VRWYKDGQEVEE----SDFVVLENEGPHRRLVLPATQPSDG--GEFQCVA   80 (91)
T ss_dssp             CCTTCCEEEEEECSCT--T-SC-CEEEETTSCCCC----CSSCEEEEETTEEEEEESSCCGGGC--SEEEEEC
T ss_pred             EECCCcEEEEEEECCC--C-cE-EEEEECCEEeee----eeeeeEEecCCeEEEEeCCCChhhc--EEEEEEE
Confidence            3479999999998431  1 22 479999977755    5788888877   599999998874  3455554

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=97.35  E-value=0.00013  Score=44.06  Aligned_cols=63  Identities=13%  Similarity=0.192  Sum_probs=45.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCc---cEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG---eL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .|..|.++.|.|.+..+-.   ....|.+++..|.+   .+.+|.+..+|   .|.|++++.+|.  ..-.|..
T Consensus        16 ~v~~G~~v~l~C~~~g~p~---p~v~W~k~~~~~~~---~~~~~~~~~~~~~~~L~i~~~~~~D~--G~Y~C~a   81 (99)
T 1u2h_A           16 SVREGQDVIMSIRVQGEPK---PVVSWLRNRQPVRP---DQRRFAEEAEGGLCRLRILAAERGDA--GFYTCKA   81 (99)
T ss_dssp             EEETTCCEEEEEEEEEESC---CEEEEEETTEECCC---BTTEEEEECGGGEEEEEESSCCGGGC--EEEEEEE
T ss_pred             EecCCCEEEEEEEEEEcCC---CEEEEEECCEECCC---CCCEEEEECCCCEEEEEEccCCcCCC--EEEEEEE
Confidence            5778999999999743322   25789999977654   35678887777   499999988774  3344543

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=97.33  E-value=0.0003  Score=48.95  Aligned_cols=60  Identities=18%  Similarity=0.185  Sum_probs=43.3

Q ss_pred             ceeecCeEEEEcc-CCCCccceeEEeEEcc--CCeeee---cCc---CCCceEEEccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQ-IPSYMSEYIIVTSWIQ--DDVNIY---LNT---DTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~-IPs~V~d~V~V~SW~~--Dd~~I~---p~~---~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      .+..|.++.|.|. +|.  ..-.....|.+  ++..|.   +..   ..++||.++++|.|.|++++.+|.
T Consensus        10 ~g~~G~sv~L~~~~~~~--~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~Ds   78 (182)
T 1hnf_A           10 WGALGQDINLDIPSFQM--SDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQ   78 (182)
T ss_dssp             EEETTSCEEECCTTCCC--CSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGC
T ss_pred             EEecCCCEEEeCCcccc--cCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhC
Confidence            5679999999994 221  12356789999  775552   100   147899999999999999998775

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=97.33  E-value=0.00012  Score=47.80  Aligned_cols=62  Identities=19%  Similarity=0.287  Sum_probs=42.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeee-----ec---------CcCCCceEEEcc------CccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI-----YL---------NTDTGGKYVVLS------SGDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I-----~p---------~~~~dgKY~vlp------sGeL~Ir~v~~~   77 (98)
                      .|+.|.+|.|.|.+.....+-+....|.+++..+     +.         .....||+...+      ++.|.|++++.+
T Consensus        10 tv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~   89 (218)
T 4frw_A           10 TVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNAVQA   89 (218)
T ss_dssp             EEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESSCCGG
T ss_pred             EEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEeeccHH
Confidence            4678999999999977777777778999876211     10         112345665543      356999999988


Q ss_pred             cC
Q psy5692          78 TG   79 (98)
Q Consensus        78 ~~   79 (98)
                      |.
T Consensus        90 D~   91 (218)
T 4frw_A           90 DE   91 (218)
T ss_dssp             GC
T ss_pred             HC
Confidence            74

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.29  E-value=9.2e-05  Score=45.57  Aligned_cols=54  Identities=17%  Similarity=0.244  Sum_probs=41.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCcc---EEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGe---L~Ir~v~~~~~   79 (98)
                      .|..|.++.|.|.+...-..    ..|++++..|.+    +++|.+..+|.   |.|++++.+|.
T Consensus        21 ~v~~G~~v~l~C~~~~~p~~----v~W~k~g~~~~~----~~~~~~~~~~~~~~L~I~~~~~~D~   77 (104)
T 2e6p_A           21 TFTTSERVVLTCELSRVDFP----ATWYKDGQKVEE----SELLVVKMDGRKHRLILPEAKVQDS   77 (104)
T ss_dssp             EEESSSCEECCEECSSTTCC----CEEEETTEECCC----BTTBEEEEETTEEEEEESSCCTTTC
T ss_pred             EEeCCCcEEEEEEecCCCCc----cEEeeCCEECCC----CCCEEEEeCCCEEEEEECCCChhhC
Confidence            45689999999998655443    489999977644    46888877664   99999888774

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=97.28  E-value=0.00019  Score=44.29  Aligned_cols=56  Identities=13%  Similarity=0.294  Sum_probs=41.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccC---ccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS---GDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlps---GeL~Ir~v~~~~~   79 (98)
                      .|..|.++.|.|.+..  ..  ....|++++..|.+..  ..||.+..+   +.|.|++++.+|.
T Consensus        18 ~v~~G~~v~l~C~~~~--~~--~~v~W~k~g~~l~~~~--~~~~~~~~~~~~~~L~I~~~~~~D~   76 (103)
T 1x44_A           18 TAYCGERVELECEVSE--DD--ANVKWFKNGEEIIPGP--KSRYRIRVEGKKHILIIEGATKADA   76 (103)
T ss_dssp             EEETTEEEEEEEECSS--SS--CCCEEEETTEECCCST--TCSEEEEEETTEEEEEEEEECTTTC
T ss_pred             EEECCCCEEEEEEecC--CC--CeEEEEECCEECCCCC--ceEEEEEEcCCEEEEEECCCCcccC
Confidence            5678999999999843  22  4568999998775521  118888866   5799999998875

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=97.27  E-value=0.00039  Score=42.46  Aligned_cols=70  Identities=13%  Similarity=0.159  Sum_probs=44.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC--------eeeecCc-----CCCceEEEcc-----CccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--------VNIYLNT-----DTGGKYVVLS-----SGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd--------~~I~p~~-----~~dgKY~vlp-----sGeL~Ir~v~~~~~   79 (98)
                      .|..|.+|+|.|.+.+.-..-.....|.+.+        ..++...     ...+||.+..     ++.|.|++++.+|.
T Consensus         5 ~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~   84 (109)
T 2oyp_A            5 KVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLDDH   84 (109)
T ss_dssp             EECTTSCEEECCBCCCCTTCCCCCEEEESSSCCSSSCSSEEEEECSSSEEEESCTTEEECSCGGGTBCCEEECSCCGGGC
T ss_pred             EEEcCCCEEEEEEeECCCCCCeEEEEEEecCCCCCCceeEEEEcCCcCccccccceEEEccCccCCcEeEEEccCCChhC
Confidence            4668999999999865432222336898864        2223211     1367888754     36899999998875


Q ss_pred             Ccceeeeeeh
Q psy5692          80 NLSVKKMKVE   89 (98)
Q Consensus        80 n~~~~~~~~~   89 (98)
                        ..=.|.+.
T Consensus        85 --G~Y~C~v~   92 (109)
T 2oyp_A           85 --GTYCCRIQ   92 (109)
T ss_dssp             --EEEEEEEC
T ss_pred             --eEEEEEEE
Confidence              34455544

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=97.24  E-value=0.00026  Score=43.22  Aligned_cols=60  Identities=15%  Similarity=0.284  Sum_probs=44.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+..|.++.|.|.+...-    ....|.+++..|.+    ++|+.+. +|.|.|++++.+|.  ..-.|..
T Consensus        20 ~v~~G~~v~l~C~~~g~p----p~i~W~k~g~~~~~----~~~~~~~-~~~L~i~~~~~~D~--G~Y~C~a   79 (95)
T 2ckn_A           20 LVHPGDLLQLRCRLRDDV----QSINWLRDGVQLVE----SNRTRIT-GEEVEVRDSIPADS--GLYACVT   79 (95)
T ss_dssp             EECTTSCEEEECCEESSC----CEEEEEBTTBCCCC----CSSEEEC-SSEEEESSCCGGGS--EEEEEEE
T ss_pred             EEcCCCeEEEEEECCCCC----CceEEEECCEecCC----CCCEEEe-CCEEEECCCChHHC--EEEEEEe
Confidence            566899999999986542    25789998876644    5687765 88999999998774  3444543

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.21  E-value=5.5e-05  Score=46.64  Aligned_cols=58  Identities=12%  Similarity=0.253  Sum_probs=43.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCcc---EEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGe---L~Ir~v~~~~~   79 (98)
                      .|..|.++.|.|.+...-    ....|++++..|.++....+||.+..+|.   |.|++++.+|.
T Consensus        19 ~v~~G~~v~l~C~~~~~~----~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~   79 (101)
T 2edk_A           19 QVFVGDRVEMAVEVSEEG----AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDR   79 (101)
T ss_dssp             EEESSCCCBCCEEESCSS----CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGC
T ss_pred             EEcCCCCEEEEEEEeCCC----CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhC
Confidence            677999999999986432    34689999977755322223888887774   99999988775

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=97.20  E-value=0.00031  Score=45.44  Aligned_cols=69  Identities=17%  Similarity=0.275  Sum_probs=45.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----ee--eecCc-------CCCceEEEcc------CccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VN--IYLNT-------DTGGKYVVLS------SGDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~--I~p~~-------~~dgKY~vlp------sGeL~Ir~v~~~   77 (98)
                      .|+.|.+|+|.|.+++...+-+....|.+.+     ..  ++...       ...||..+.+      ++.|.|+|++.+
T Consensus        11 tv~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~   90 (123)
T 4gjt_B           11 TVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNAVQA   90 (123)
T ss_dssp             ECCTTSEEEECCEECCCTTCCEEEEEEEECCCSSCCCEEEEECSSSCCCBCGGGTTTEECCCSSCCTTBCCEEEESCCSS
T ss_pred             EEEcCCCEEEEEEEeCCccCceeEEEEEEcCCCCCcceeEEEEecCCcEeCccceeEEEEecCCCcCCEEEEEECCCChH
Confidence            4678999999999877766666777898753     11  11111       1246776643      346999999988


Q ss_pred             cCCcceeeeee
Q psy5692          78 TGNLSVKKMKV   88 (98)
Q Consensus        78 ~~n~~~~~~~~   88 (98)
                      |.  ..=.|.+
T Consensus        91 Ds--G~Y~C~v   99 (123)
T 4gjt_B           91 DE--GEYECRV   99 (123)
T ss_dssp             SC--SEEEEEE
T ss_pred             HC--EEEEEEE
Confidence            75  3444544

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=97.20  E-value=0.0004  Score=47.33  Aligned_cols=60  Identities=18%  Similarity=0.261  Sum_probs=42.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeee--e-cCc-----------CCCceEEEccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI--Y-LNT-----------DTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I--~-p~~-----------~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      .+..|.+|+|.|.++..  .-+....|.+++..|  + +..           ...+|+.++++|.|.|++++.+|.
T Consensus         9 ~~~~G~~v~L~C~~~~~--~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~   82 (193)
T 2if7_A            9 NGILGESVTLPLEFPAG--EKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDT   82 (193)
T ss_dssp             EEETTSCEEECCCCCCC--SCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGC
T ss_pred             EEEecCeEEEeccCCCc--ccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccC
Confidence            56789999999998632  123357899986333  2 211           012588888999999999998875

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=97.20  E-value=0.00043  Score=42.44  Aligned_cols=69  Identities=20%  Similarity=0.197  Sum_probs=45.8

Q ss_pred             ceeecCeEEEEccCCCCccc-eeEEeEEccCC-------eee--ec--------CcCCCceEEEccC------ccEEEEe
Q psy5692          18 NVILGNTAVLRCQIPSYMSE-YIIVTSWIQDD-------VNI--YL--------NTDTGGKYVVLSS------GDLYVQI   73 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d-~V~V~SW~~Dd-------~~I--~p--------~~~~dgKY~vlps------GeL~Ir~   73 (98)
                      .+..|.+++|.|.+...-.+ ......|.+.+       ..+  |.        .....+|+.+.++      +.|.|++
T Consensus        16 ~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~   95 (126)
T 1eaj_A           16 EKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTN   95 (126)
T ss_dssp             EEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEECS
T ss_pred             EEEeCCCEEEEEEEecCCCCCCceEEEEEEeCCCcCCCceEEEEEeCCeeccccCccccCeeEEEcccccCCeEEEEECc
Confidence            46689999999998544332 22457888764       222  22        1234689998876      8899999


Q ss_pred             EeeecCCcceeeeee
Q psy5692          74 RLSITGNLSVKKMKV   88 (98)
Q Consensus        74 v~~~~~n~~~~~~~~   88 (98)
                      ++.+|.  ..-.|.+
T Consensus        96 v~~~D~--G~Y~C~v  108 (126)
T 1eaj_A           96 LQLSDI--GTYQCKV  108 (126)
T ss_dssp             CCGGGC--EEEEEEE
T ss_pred             CChHHC--eEEEEEE
Confidence            998874  3445544

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=97.19  E-value=0.00068  Score=44.94  Aligned_cols=70  Identities=16%  Similarity=0.235  Sum_probs=47.2

Q ss_pred             EeeeeceeecCeEEEEccCCCCccceeEEeEEccCCe-----ee----------ecCcCCCceEEEccCccEEEEeEeee
Q psy5692          13 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDV-----NI----------YLNTDTGGKYVVLSSGDLYVQIRLSI   77 (98)
Q Consensus        13 V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~-----~I----------~p~~~~dgKY~vlpsGeL~Ir~v~~~   77 (98)
                      .... .|..|.+++|.|...+.-   .....|.+++.     .|          .+.....||+.++++|.|.|++++.+
T Consensus         6 ~~~~-~v~~G~~v~L~C~~~~~~---~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~   81 (208)
T 3r4d_A            6 AVPP-QVAEDNNVLLLVHNLPLA---LGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMK   81 (208)
T ss_dssp             EESS-EEETTCCEEEEEECCCSS---CSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGG
T ss_pred             Cccc-eeecCCcEEEEEeCCCCC---ceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEcccccc
Confidence            3344 788999999999953322   23568988742     11          12223578999999999999999988


Q ss_pred             cCCcceeeeee
Q psy5692          78 TGNLSVKKMKV   88 (98)
Q Consensus        78 ~~n~~~~~~~~   88 (98)
                      |.  ..-.|.+
T Consensus        82 D~--G~Y~C~~   90 (208)
T 3r4d_A           82 DM--GVYTLDM   90 (208)
T ss_dssp             GC--EEEEEEE
T ss_pred             CC--eEEEEEE
Confidence            74  2344444

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.16  E-value=0.00012  Score=44.81  Aligned_cols=54  Identities=22%  Similarity=0.299  Sum_probs=41.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCc---cEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG---eL~Ir~v~~~~~   79 (98)
                      .|..|.++.|.|.+. .   -.....|++++..|.+    +++|.+..+|   .|.|++++.+|.
T Consensus        22 ~v~~G~~v~L~C~~~-~---p~~~v~W~k~g~~~~~----~~~~~~~~~~~~~~L~I~~~~~~D~   78 (102)
T 2eo1_A           22 QAEAGASATLSCEVA-Q---AQTEVTWYKDGKKLSS----SSKVRVEAVGCTRRLVVQQAGQAEA   78 (102)
T ss_dssp             EEETTCCEEECCBCS-C---SSSCCEEEETTEECCC----CSSEEEEEETTEEEEEETTCCTTTC
T ss_pred             EEeCCCcEEEEEEec-C---CCCceEEEECCEECCC----CCCEEEEEcCCEEEEEECCCCcccC
Confidence            566899999999975 1   1234689999977644    4688888776   799999988775

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=97.16  E-value=0.00016  Score=44.48  Aligned_cols=54  Identities=15%  Similarity=0.239  Sum_probs=40.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCcc---EEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGe---L~Ir~v~~~~~   79 (98)
                      .|..|.++.|.|.+. .  . .....|++++..|.+    +++|.+..+|.   |.|++++.+|.
T Consensus        19 ~v~~G~~v~l~C~~~-~--p-~~~v~W~k~g~~i~~----~~~~~~~~~~~~~~L~I~~~~~~D~   75 (100)
T 2yuv_A           19 QVDKGGRVRFVVELA-D--P-KLEVKWYKNGQEIRP----STKYIFEHKGCQRILFINNCQMTDD   75 (100)
T ss_dssp             EECTTEEEEEEEEES-C--T-TSCEEEEESSCBCCC----BTTEEEEEETTEEEEEEEEECTTTC
T ss_pred             EEcCCCcEEEEEEec-C--C-CceEEEEECCEECCC----CCCEEEEecCCEEEEEEcCCCcCcC
Confidence            355899999999975 2  1 123689999976654    46898887774   99999988774

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.15  E-value=0.00016  Score=44.38  Aligned_cols=54  Identities=24%  Similarity=0.348  Sum_probs=42.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCcc---EEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGe---L~Ir~v~~~~~   79 (98)
                      .|..|.++.|.|.+..--    ....|++++..|.+    +++|.+..+|.   |.|++++.+|.
T Consensus        19 ~v~~G~~v~l~C~~~~~~----~~v~W~k~g~~~~~----~~~~~~~~~~~~~~L~I~~v~~~D~   75 (103)
T 2edf_A           19 WVAPGEDVELRCELSRAG----TPVHWLKDRKAIRK----SQKYDVVCEGTMAMLVIRGASLKDA   75 (103)
T ss_dssp             EECTTSCEEECCEESSSS----CCCCEEESSCBCCC----SSSEEEEEETTEEEEEESSCCTTTC
T ss_pred             EEcCCCCEEEEEEEeCCC----CcEEEEECCEEccC----CCCEEEEECCCEEEEEECCCCcccC
Confidence            677999999999986311    13689999876644    56999988885   99999988874

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=97.11  E-value=0.00044  Score=41.92  Aligned_cols=55  Identities=22%  Similarity=0.292  Sum_probs=40.8

Q ss_pred             ceeecCeEEEEccCCCC-ccceeEEeEEccCCeeeecCcCCCceEEEc-cCc--cEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDDVNIYLNTDTGGKYVVL-SSG--DLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~-V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vl-psG--eL~Ir~v~~~~~   79 (98)
                      .|..|.++.|.|.+..+ -.   ....|.+++..|.+    +++|.+. .+|  .|.|++++..|.
T Consensus        12 ~v~~G~~v~l~C~~~g~~p~---~~v~W~~~~~~~~~----~~~~~~~~~~~~~~L~i~~v~~~D~   70 (97)
T 2bk8_A           12 VGEEGGHVKYVCKIENYDQS---TQVTWYFGVRQLEN----SEKYEITYEDGVAILYVKDITKLDD   70 (97)
T ss_dssp             EECTTCCEEEEEEEESCCTT---CEEEEEETTEECCS----SSSEEEEEETTEEEEEECSCCGGGC
T ss_pred             EEcCCCcEEEEEEEeccCCC---CEEEEEECCEECcC----CCCEEEEEcCCeEEEEEecCChhhC
Confidence            45689999999997643 22   25689999976643    5788774 566  899999887764

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=97.10  E-value=0.00029  Score=46.16  Aligned_cols=65  Identities=17%  Similarity=0.292  Sum_probs=49.0

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .+..|.++.|.|.+.++-..   ..+|.+++..+.+.  .+++|.+.++|.|.|.+++.+|.  ..-.|...
T Consensus       111 ~~~~g~~~~l~C~~~g~p~~---~v~W~~~~~~~~~~--~~~~~~~~~~~~L~i~~~~~~d~--G~Y~C~a~  175 (191)
T 1epf_A          111 EFKEGEDAVIVCDVVSSLPP---TIIWKHKGRDVILK--KDVRFIVLSNNYLQIRGIKKTDE--GTYRCEGR  175 (191)
T ss_dssp             ECCTTSCEEECCEEECSSCC---EEEEEETTEEGGGG--CCTTEEECTTSCEEETTCCGGGC--EEEEEEEE
T ss_pred             eecCCCeEEEEEEECCCCCC---EEEEEECCEEeecc--CCceEEEecCCeEEECCCChhhC--EEEEEEEE
Confidence            56789999999998654333   37899999766432  46799999999999999988774  34555543

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=97.10  E-value=0.00028  Score=44.49  Aligned_cols=64  Identities=11%  Similarity=0.233  Sum_probs=45.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCc---cEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG---eL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .|..|.++.|.|.+...-.-   ...|.+++..|.+.  .++||.+..+|   .|.|++++.+|.  ..-.|.+
T Consensus        16 ~v~~G~~~~l~C~~~g~P~p---~v~W~k~g~~i~~~--~~~~~~~~~~~~~~~L~I~~~~~~D~--G~Y~C~a   82 (100)
T 3knb_A           16 SIDEGKVLTVACAFTGEPTP---EVTWSCGGRKIHSQ--EQGRFHIENTDDLTTLIIMDVQKQDG--GLYTLSL   82 (100)
T ss_dssp             EEETTSEEEEEEEEEEESCC---EEEEEETTEECCTT--GGGTEEEEECSSEEEEEESSCCGGGC--EEEEEEE
T ss_pred             EEeCCCeEEEEEEEEEecCC---EEEEEECceEeeee--ccceeeeecccceEEEEEcCCCccCC--EEEEEEE
Confidence            56789999999997433222   35799999877542  35789888766   599999888763  3455554

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=97.09  E-value=0.00033  Score=45.52  Aligned_cols=64  Identities=13%  Similarity=0.255  Sum_probs=44.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .|..|.++.|.|.+...-.   ....|.+++..+.+.  .+++|.+.++|.|.|.+++..|.-  .-.|.+
T Consensus        13 ~v~~G~~v~l~C~~~~~p~---~~v~W~~~~~~~~~~--~~~~~~~~~~~~L~i~~~~~~d~G--~Y~C~~   76 (189)
T 2v5t_A           13 EFKQGEDAEVVCRVSSSPA---PAVSWLYHNEEVTTI--SDNRFAMLANNNLQILNINKSDEG--IYRCEG   76 (189)
T ss_dssp             EEETTSCEEECCEEECSSC---CEEEEEC-----CBC--CCTTEEECTTSCEEETTCCGGGCE--EEEEEE
T ss_pred             EEeCCCcEEEEEEEcCCCC---CEEEEEECCccceec--cCCeEEEecCCCEEEeeCCHhHCc--EEEEEE
Confidence            6778999999999864422   247899998665432  478999999999999999887753  445544

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=97.07  E-value=0.00049  Score=41.67  Aligned_cols=66  Identities=17%  Similarity=0.163  Sum_probs=43.0

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .|..|.++.|.|.+..+-.   ....|.+++..+.+.............+.|.|++++..|.  ..-.|.+
T Consensus        19 ~v~~G~~v~l~C~~~g~p~---p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~--G~Y~C~a   84 (100)
T 3caf_A           19 AVPAANTVKFRCPAGGNPM---PTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK--GNYTCVV   84 (100)
T ss_dssp             EECTTCCEEEECCEEEESC---CEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGC--EEEEEEE
T ss_pred             EecCCCEEEEEEEccccCC---CEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCC--EEEEEEE
Confidence            4568999999999743322   2368999997775533333233334566899999988774  3455554

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=97.07  E-value=0.00067  Score=46.37  Aligned_cols=60  Identities=15%  Similarity=0.143  Sum_probs=42.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccC-Ceeee---cC-------cCCCceEEE-ccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQD-DVNIY---LN-------TDTGGKYVV-LSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~D-d~~I~---p~-------~~~dgKY~v-lpsGeL~Ir~v~~~~~   79 (98)
                      .|+.|.+++|.|....  .+-.....|.+. +..|.   +.       ....||+.+ .++|.|.|++++..|.
T Consensus        10 ~v~~G~~vtL~c~~~~--~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~   81 (180)
T 2dru_A           10 NAITGSNVTLTILKHP--LASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDR   81 (180)
T ss_dssp             EEETTSCEEECCCSSC--CCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGC
T ss_pred             EEEeCCCEEEeCCCCC--CCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHC
Confidence            5789999999999732  222446799994 33332   11       122389999 7899999999998875

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=97.06  E-value=0.00025  Score=45.47  Aligned_cols=65  Identities=17%  Similarity=0.266  Sum_probs=46.2

Q ss_pred             eeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCc---cEEEEeEeeecCCcceeeeee
Q psy5692          14 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        14 ~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG---eL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+. .|..|.++.|.|.+...-.-   ...|++++..|.+    ++||.+..+|   .|.|++++.+|.  ..-.|..
T Consensus        21 ~~~-~v~~G~~~~l~C~~~G~P~p---~v~W~k~g~~l~~----~~~~~~~~~~~~~~L~I~~v~~~D~--G~Y~C~a   88 (107)
T 3knb_B           21 RPV-RVVSGAEAELKCVVLGEPPP---VVVWEKGGQQLAA----SERLSFPADGAEHGLLLTAALPTDA--GVYVCRA   88 (107)
T ss_dssp             CCE-EEETTSCEEEEEEEEEESCC---EEEEEETTEECCC----CSSEECCEETTEEEEEESSCCGGGC--EEEEEEE
T ss_pred             CcE-EEeCCCcEEEEEEEEEecCC---EEEEEECcccccc----eeeEEEeecCceEEEEEecCChhhC--EEEEEEE
Confidence            344 67789999999997432221   3589999987754    5788888766   499999988774  3445544

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=97.05  E-value=0.00033  Score=42.10  Aligned_cols=62  Identities=18%  Similarity=0.180  Sum_probs=44.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCc---cEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG---eL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+..|.++.|.|.+...-.   ....|.+++..|.+    +++|.+..++   .|.|++++.+|.  ..-.|.+
T Consensus        17 ~v~~G~~~~l~C~~~g~p~---p~v~W~~~g~~~~~----~~~~~~~~~~~~~~L~i~~~~~~d~--G~Y~C~a   81 (99)
T 3puc_A           17 TVSSDSVAKFAVKATGEPR---PTAIWTKDGKAITQ----GGKYKLSEDKGGFFLEIHKTDTSDS--GLYTCTV   81 (99)
T ss_dssp             EEESSSCEEEEEEEEEESC---CEEEEEETTEECCS----SSSEEEEEETTEEEEEECSCCGGGC--EEEEEEE
T ss_pred             EEeCCCcEEEEEEEEecCC---CEEEEEECCEECcC----CCCEEEEEeCCEEEEEECCCCcccC--EEEEEEE
Confidence            6778999999999753322   24589999876644    5789888766   599999988773  3444544

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens}

Probab=97.05  E-value=0.00088  Score=43.60  Aligned_cols=68  Identities=21%  Similarity=0.224  Sum_probs=46.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-eeee---------cCcCCCceEEEc-cCccEEEEeEeeecCCcceeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIY---------LNTDTGGKYVVL-SSGDLYVQIRLSITGNLSVKKM   86 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-~~I~---------p~~~~dgKY~vl-psGeL~Ir~v~~~~~n~~~~~~   86 (98)
                      .|+.|.+++|.|..+..  .-.....|.+.. ..|.         +.....||+.+. ++|.|.|+|++.+|.  ..=.|
T Consensus        15 ~~~~G~~VtL~c~~~~~--~~~~~i~W~~~~~~~i~~~~~~~~~~~~~~f~~R~~l~~~~~sL~I~nv~~~Ds--G~Y~c   90 (121)
T 2edo_A           15 TVVSGSNVTLNISESLP--ENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDN--STYIM   90 (121)
T ss_dssp             EEETTSCEEECCSSCCC--SSEEEEEEEEETTEEEEEECSSCEEECSCTTTTTCEECTTTCCEEESSCCGGGC--SEEEE
T ss_pred             EEEeCCCEEEeCCCCCC--CceeEEEEEcCCCCeEEEEECcCCeEeChhcCCcEEEeCCCceEEEeCCCHHHC--eEEEE
Confidence            57799999999997321  224567898875 2332         112345788887 899999999999886  34555


Q ss_pred             eeh
Q psy5692          87 KVE   89 (98)
Q Consensus        87 ~~~   89 (98)
                      .+.
T Consensus        91 ~v~   93 (121)
T 2edo_A           91 RVL   93 (121)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            553

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=97.03  E-value=0.00059  Score=50.61  Aligned_cols=57  Identities=25%  Similarity=0.422  Sum_probs=42.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      .|..|.+++|.|..|+...+  ...+|.+++..++.   .+.+++...+|.|+|++++..|.
T Consensus       113 ~v~~G~~~~l~C~~~~~~~~--~~~~W~~~~~~~~~---~~~~~~~~~~~~L~I~~v~~~D~  169 (384)
T 3kld_A          113 SVRRGQGMVLLCGPPPHSGE--LSYAWIFNEYPSYQ---DNRRFVSQETGNLYIAKVEKSDV  169 (384)
T ss_dssp             EEEETCCEEECCCCCSEESC--EEEEEEETTEECCC---SSSEEECTTTCCEEESSCCGGGC
T ss_pred             eEEcCCCeEEecCCCCCCCC--eEEEEEECCCCCEe---eccEEEEcCCCcEEEeecCHHHC
Confidence            56789999999987643322  46799999966543   34566667899999999988774

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=97.03  E-value=0.00024  Score=47.73  Aligned_cols=68  Identities=15%  Similarity=0.153  Sum_probs=46.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCe-----eeec----CcCCCceEE----------EccCccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDV-----NIYL----NTDTGGKYV----------VLSSGDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~-----~I~p----~~~~dgKY~----------vlpsGeL~Ir~v~~~~   78 (98)
                      .|..|.++.|.|.+...-.  .....|.+++.     .|.+    .....+|+.          +.++|.|.|++++..|
T Consensus        11 ~v~~G~~v~L~C~~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~~~D   88 (231)
T 2pet_A           11 EVMRGKSVILDCTPTGTHD--HYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVGD   88 (231)
T ss_dssp             EEETTCCEEECCCCBSCCS--EEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCCGGG
T ss_pred             EEEcCCCEEEecccCCCCC--ceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccCccc
Confidence            4668999999999865433  56789997652     2221    111245665          8888999999999887


Q ss_pred             CCcceeeeeeh
Q psy5692          79 GNLSVKKMKVE   89 (98)
Q Consensus        79 ~n~~~~~~~~~   89 (98)
                      .  ..-.|.+.
T Consensus        89 ~--G~Y~C~~~   97 (231)
T 2pet_A           89 E--RDYVCVVR   97 (231)
T ss_dssp             C--EEEEEEEE
T ss_pred             C--ceEEEEEE
Confidence            5  45666654

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=97.02  E-value=0.00056  Score=43.85  Aligned_cols=59  Identities=22%  Similarity=0.290  Sum_probs=42.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-eeeecC---cCCCceEEEcc----CccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLN---TDTGGKYVVLS----SGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-~~I~p~---~~~dgKY~vlp----sGeL~Ir~v~~~~~   79 (98)
                      .|..|.+++|.|.+...-.   ...+|..++ ..++..   ...++||.+..    ++.|.|++++.+|.
T Consensus        12 ~v~~G~~v~L~C~~~~~p~---~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~Ds   78 (124)
T 3rbg_A           12 TVEEGQTLTLKCVTSLRKN---SSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDE   78 (124)
T ss_dssp             EEETTSCEEEEEECCCCTT---CEEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEcCCCCEEEEeEEeccCC---CEEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCChHHC
Confidence            5668999999999865433   356898776 444421   12578888865    68999999998875

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=96.98  E-value=0.0016  Score=40.56  Aligned_cols=67  Identities=16%  Similarity=0.215  Sum_probs=44.6

Q ss_pred             ceeecCeEEEEccC-CCCccceeEEeEEccCC-eeee--c--------CcCCCceEEEc-cCccEEEEeEeeecCCccee
Q psy5692          18 NVILGNTAVLRCQI-PSYMSEYIIVTSWIQDD-VNIY--L--------NTDTGGKYVVL-SSGDLYVQIRLSITGNLSVK   84 (98)
Q Consensus        18 ~VirGNtAVLkC~I-Ps~V~d~V~V~SW~~Dd-~~I~--p--------~~~~dgKY~vl-psGeL~Ir~v~~~~~n~~~~   84 (98)
                      .|..|.+++|.|.+ ++.-   .....|.+++ ..|.  .        .....||+.+. .++.|.|++++.+|.  ..=
T Consensus        14 ~~~~G~~v~L~C~~~~~~~---~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~Ds--G~Y   88 (110)
T 2ptt_A           14 NAYTGSNVTLKIHKDPLGP---YRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALHISNVRKEDK--GTY   88 (110)
T ss_dssp             EEETTSCEEECSCSSCCCS---CSEEEEEESTTBEEEEEETTSCEEECSSTTTTTEEECTTTCCEEESSCCGGGC--EEE
T ss_pred             EEecCCcEEEeCCccCCCC---cCEEEEEecCCccEEEEECCCCceeeccccCCcEEEeCCCccEEECCCCcccC--eEE
Confidence            46789999999998 4322   2357899854 3232  1        11234799887 689999999998875  444


Q ss_pred             eeeeh
Q psy5692          85 KMKVE   89 (98)
Q Consensus        85 ~~~~~   89 (98)
                      .|.+.
T Consensus        89 ~C~v~   93 (110)
T 2ptt_A           89 YMRVL   93 (110)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55543

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=96.95  E-value=0.00056  Score=44.68  Aligned_cols=63  Identities=17%  Similarity=0.328  Sum_probs=45.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCcc-EEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD-LYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGe-L~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+..|.++.|.|.+.+.-.   ....|.+++..+.+   .+++|.+.++|. |.|++++.+|.-  .-.|.+
T Consensus        18 ~~~~G~~v~l~C~~~~~p~---~~i~W~~~~~~~~~---~~~~~~~~~~~~~L~i~~~~~~d~G--~Y~C~~   81 (192)
T 2iep_A           18 DALVEEVATFMCAVESYPQ---PEISWTRNKILIKL---FDTRYSIRENGQLLTILSVEDSDDG--IYCCTA   81 (192)
T ss_dssp             EEETTSCEEEECCEEEESC---CEEEEEETTEECCT---TCTTEEEEGGGTEEEESSCCGGGCE--EEEEEE
T ss_pred             eeeCCCcEEEEeeCCCCCC---CeEEEEECCEEccc---cCccEEEcCCccEEEEcCCCcccCe--EEEEEE
Confidence            4678999999999853222   25689999876644   468999888776 889998877653  345544

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=96.94  E-value=0.00057  Score=41.57  Aligned_cols=62  Identities=11%  Similarity=0.095  Sum_probs=43.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCc---cEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG---eL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+..|.++.|.|.+...-.   ....|.+++..|.+    +++|.+..+|   .|.|.+++.+|.  ..-.|..
T Consensus        19 ~v~~G~~v~l~C~~~g~p~---p~i~W~k~~~~~~~----~~~~~~~~~~~~~~L~i~~~~~~D~--G~Y~C~a   83 (103)
T 3qp3_A           19 RVPCGQNTRFILNVQSKPT---AEVKWYHNGVELQE----SSKIHYTNTSGVLTLEILDCHTDDS--GTYRAVC   83 (103)
T ss_dssp             EEETTCCEEEEEEEEEESC---CEEEEEETTEECCC----CSSEEEEEETTEEEEEECSCCGGGC--EEEEEEE
T ss_pred             EEeCCCeEEEEEEEEecCC---CEEEEEECCEECCC----CCCEEEEECCCEEEEEEcCCCcccC--EEEEEEE
Confidence            6779999999999743222   25689999977654    4688887655   499999887774  3344443

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.89  E-value=0.0012  Score=40.75  Aligned_cols=56  Identities=14%  Similarity=0.280  Sum_probs=41.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc--Cc--cEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS--SG--DLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp--sG--eL~Ir~v~~~~~   79 (98)
                      .|..|.++.|.|.+..+-.   ....|++++..|.+   .+++|.+..  +|  .|.|++++.+|.
T Consensus        19 ~v~~G~~v~l~C~~~g~p~---p~v~W~k~g~~~~~---~~~~~~~~~~~~~~~~L~i~~v~~~D~   78 (110)
T 2dm2_A           19 KIFEGMPVTFTCRVAGNPK---PKIYWFKDGKQISP---KSDHYTIQRDLDGTCSLHTTASTLDDD   78 (110)
T ss_dssp             EEETTCCEEEEEEBCCSSC---CEEEEECSSCBCCT---TCSSEEEEECTTCEEEEEESSCCTTTC
T ss_pred             EEeCCCeEEEEEEEEecCC---CEEEEEECCEECCC---CCCeEEEEECCCcEEEEEECCCChhhC
Confidence            5678999999999864433   24789999876654   356787765  45  599999888774

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=96.87  E-value=0.00047  Score=43.10  Aligned_cols=55  Identities=15%  Similarity=0.138  Sum_probs=40.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc---CccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS---SGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp---sGeL~Ir~v~~~~~   79 (98)
                      .|..|.++.|.|.+...-.   -...|++++..|..    +++|.+..   .+.|.|++++.+|.
T Consensus        18 ~v~~G~~v~l~C~~~g~p~---p~i~W~k~~~~~~~----~~~~~~~~~~~~~~L~I~~v~~~D~   75 (114)
T 2cqv_A           18 KVRAGESVELFGKVTGTQP---ITCTWMKFRKQIQE----SEHMKVENSENGSKLTILAARQEHC   75 (114)
T ss_dssp             EEETTCCEEEEEEEESSSS---CEEEEEESSSBCCC----SSSEEEEECSSEEEEEETTCCTTTC
T ss_pred             EEeCCCeEEEEEEEEcCCC---CEEEEEECCEECcC----CCCEEEEEcCCEEEEEECCCChhcC
Confidence            5678999999999854322   23569999976643    45887764   46799999887764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=96.87  E-value=0.00078  Score=50.64  Aligned_cols=57  Identities=23%  Similarity=0.446  Sum_probs=42.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      .|..|.+|+|.|.+.. -.-   ...|.+++..+......++||.+ ++|.|.|++|+.+|.
T Consensus       257 ~v~~G~~~~l~C~~~g-p~p---~i~W~~~~~~~~~~~~~~~r~~~-~~~~L~I~~v~~~D~  313 (361)
T 2xot_A          257 EAHLGDTLTIRCDTKQ-QGM---TKVWVSPSNEQVLSQGSNGSVSV-RNGDLFFKKVQVEDG  313 (361)
T ss_dssp             EEETTCCEEECCCCSS-TTC---EEEEECTTSCBCCSCCSSSSEEE-ETTEEEESSCCTTSC
T ss_pred             eecCCCeEEEEeEeeC-CCC---eEEEEeCCCeeEeecccCCceEe-ecCeEEEeecCcccC
Confidence            4678999999999854 222   24899987444343345679999 999999999998774

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=96.87  E-value=0.00046  Score=46.03  Aligned_cols=54  Identities=13%  Similarity=0.183  Sum_probs=40.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eeeecCcCCCceEEEccCcc---EEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYLNTDTGGKYVVLSSGD---LYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I~p~~~~dgKY~vlpsGe---L~Ir~v~~~~~   79 (98)
                      .|..|.++.|.|.+.+.     ....|.++.     ..|.   ..++||.+..+|.   |.|++++.+|.
T Consensus        28 ~v~~G~~v~L~C~~~~~-----~~v~W~r~~~g~~~~~l~---~~~~r~~~~~~~~~~~L~I~~~~~~Ds   89 (133)
T 3khq_A           28 AKKRSSMVKFHCYTNHS-----GALTWFRKRGSQQPQELV---SEEGRIVQTQNGSVYTLTIQNIQYEDN   89 (133)
T ss_dssp             EECTTCCEEEEEEESSS-----SCEEEEEECTTSCCEECC---CTTTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             EEeCCCeEEEEEEeCCC-----CEEEEEEeCCCCCCEEEE---EeCCCEEEEcCCCEEEEEECCCChHHC
Confidence            45689999999998765     456898873     1221   1468999988775   99999998874

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.87  E-value=0.00027  Score=43.88  Aligned_cols=54  Identities=11%  Similarity=0.137  Sum_probs=40.0

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCc---cEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG---eL~Ir~v~~~~~   79 (98)
                      .+..|.++.|.|.+. .   -.....|.+++..|.+    +++|.+.+.|   .|.|++++.+|.
T Consensus        24 ~~~~G~~v~L~C~~~-~---p~~~v~W~k~g~~~~~----~~~~~~~~~~~~~~L~I~~v~~~D~   80 (113)
T 2cpc_A           24 AAVRLERVVLTCELC-R---PWAEVRWTKDGEEVVE----SPALLLQKEDTVRRLVLPAVQLEDS   80 (113)
T ss_dssp             EEETTCCEEEEEEES-C---TTCCCEEEETTEECCC----BTTBEEEECSSEEEEEESSCCTTTC
T ss_pred             EEEcCCeEEEEEEec-C---CCCeEEEEECCEECcc----CCCEEEEECCCEEEEEECCCCcccC
Confidence            456899999999974 2   1234579999877644    4678887765   799999988774

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=96.87  E-value=0.0012  Score=39.83  Aligned_cols=64  Identities=11%  Similarity=0.135  Sum_probs=43.0

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCc--cEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG--DLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG--eL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+..|.++.|.|.+..+-.   ....|.+++..|.+.  ...++....+|  .|.|++++..|.  ..-.|.+
T Consensus        16 ~~~~G~~~~l~C~~~g~p~---p~v~W~~~g~~~~~~--~~~~~~~~~~~~~~L~i~~v~~~D~--G~Y~C~a   81 (100)
T 2kdg_A           16 SIDEGRFCRMDFKVSGLPA---PDVSWYLNGRTVQSD--DLHKMIVSEKGLHSLIFEVVRASDA--GAYACVA   81 (100)
T ss_dssp             EEETTCCEEEEEECEEESC---CEEEEEETTEEECCC--SSSCEEEETTTEEEEEESSCCGGGC--EEEEEEE
T ss_pred             EecCCCEEEEEEEEEeeCC---CEEEEEECCEECcCC--CcEEEEEcCCCeEEEEECCCCcccC--EEEEEEE
Confidence            5678999999999753322   257899999776542  23355555666  899999888764  2444443

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=96.86  E-value=0.00057  Score=43.97  Aligned_cols=47  Identities=17%  Similarity=0.182  Sum_probs=34.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeE-eeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIR-LSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v-~~~~~   79 (98)
                      .+++|.+++|.|.+...- .    .+|.+|+..|.+     +     .+|.|.|.+| +.+|.
T Consensus        10 v~~~G~~v~L~C~~~g~P-~----i~W~kdg~~l~~-----~-----~~~~L~I~~v~~~~Ds   57 (82)
T 3r08_E           10 VSISGTSVELTCPLDSDE-N----LKWEKNGQELPQ-----K-----HDKHLVLQDFSEVEDS   57 (82)
T ss_dssp             EEEETTEEEEECSSCCCS-S----CEEEETTEECTT-----C-----CSSCCBCCSCCTTTTC
T ss_pred             EEEcCCeEEEEEECCCCC-c----EEEEECCEECcC-----C-----CCCEEEECccCccCcC
Confidence            568999999999986554 2    799999877632     1     5678888885 54553

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.82  E-value=0.0012  Score=40.67  Aligned_cols=53  Identities=19%  Similarity=0.334  Sum_probs=40.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      .|..|.++.|.|.+...-    ....|++++..|.+    ++++.+. .+.|.|++++.+|.
T Consensus        14 ~v~~G~~v~L~C~~~g~p----p~i~W~k~g~~~~~----~~~~~~~-~~~L~i~~v~~~D~   66 (99)
T 2cr3_A           14 LVHPGDLLQLRCRLRDDV----QSINWLRDGVQLAE----SNRTRIT-GEEVEVQDSVPADS   66 (99)
T ss_dssp             CBCTTSCEEEECCCCSSC----CEEEEEESSSBCCC----CSSEEEC-SSEEEETTCCTTTC
T ss_pred             EEeCCCcEEEEEEecCCC----CeEEEEECCEECCC----CCcEEEE-CCEEEEccCCHHHC
Confidence            567899999999986542    26789999966543    4577775 78999999887764

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=96.80  E-value=0.0015  Score=39.89  Aligned_cols=62  Identities=10%  Similarity=0.188  Sum_probs=40.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEE-ccCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV-LSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~v-lpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+..|.++.|.|.+..+-..   ...|.+++..+.+    +.++.+ ..++.|.|.+++.+|.  ..-.|..
T Consensus        21 ~v~~G~~v~l~C~~~g~p~p---~i~W~~~~~~~~~----~~~~~~~~~~~~L~i~~v~~~D~--G~Y~C~a   83 (108)
T 3kvq_A           21 TTSIGESIEVSCTASGNPPP---QIMWFKDNETLVE----DSGIVLKDGNRNLTIRRVRKEDE--GLYTCQA   83 (108)
T ss_dssp             EEETTCCEEEECBCC----C---CEEEEESSSBCCC----BTTEEEETTTTEEEECSCCGGGC--EEEEEEE
T ss_pred             EEeCCCeEEEEEECcCcCCC---eEEEEECCeEccc----CCCeEEeCCCcEEEEeecCcccC--EEEEEEE
Confidence            56789999999997543322   3679999866543    233443 4578899999887773  3334443

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=96.76  E-value=0.00094  Score=43.19  Aligned_cols=62  Identities=19%  Similarity=0.290  Sum_probs=39.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCe--e--eecC---------cCCCceEEEccC------ccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDV--N--IYLN---------TDTGGKYVVLSS------GDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~--~--I~p~---------~~~dgKY~vlps------GeL~Ir~v~~~~   78 (98)
                      .+..|.+|+|.|.+.+....-.....|.+++.  .  +|..         ....||+.+.++      +.|.|++++.+|
T Consensus        17 ~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   96 (139)
T 1pko_A           17 RALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSD   96 (139)
T ss_dssp             EEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCGGG
T ss_pred             EEEeCCCEEEeeEccCCCCCCceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEccccccCCeEEEEEccCCHHH
Confidence            56789999999997533221123578988762  2  2221         123588888753      579999999887


Q ss_pred             C
Q psy5692          79 G   79 (98)
Q Consensus        79 ~   79 (98)
                      .
T Consensus        97 ~   97 (139)
T 1pko_A           97 E   97 (139)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=96.75  E-value=0.00086  Score=43.76  Aligned_cols=63  Identities=24%  Similarity=0.324  Sum_probs=47.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .+..|.++.|.|.+..+-..   ..+|.+++..+.+    ++++.+..+|.|.|.+++.+|.  ..-.|.+.
T Consensus       111 ~~~~g~~~~l~C~~~g~p~~---~v~W~~~~~~~~~----~~~~~~~~~~~L~i~~~~~~d~--G~Y~C~a~  173 (192)
T 2iep_A          111 KIIEGLKAVLPCTTMGNPKP---SVSWIKGDSALRE----NSRIAVLESGSLRIHNVQKEDA--GQYRCVAK  173 (192)
T ss_dssp             EEETTSCEEECCEEEEESCC---EEEEEETTEECCC----CSSEEECTTSCEEESSCCGGGC--EEEEEEEE
T ss_pred             EEeCCCcEEEEEEEeccCCc---eEEEEeCCEEccC----CCcEEEecCCcEEEecCChhhC--EEEEEEEE
Confidence            57789999999997443222   4789999976644    5789999999999999988763  34555543

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=96.74  E-value=0.0015  Score=42.45  Aligned_cols=62  Identities=24%  Similarity=0.268  Sum_probs=45.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCc---cEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG---eL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+..|.++.|.|.+...-   .....|.+++..+.+    +++|.+.++|   .|.|++++.+|.-  .-.|.+
T Consensus        18 ~v~~G~~v~l~C~~~~~p---~~~v~W~~~~~~~~~----~~~~~~~~~~~~~~L~i~~~~~~d~G--~Y~C~~   82 (197)
T 3lcy_A           18 TTKLGEAAQLSCQIVGRP---LPDIKWYRFGKELIQ----SRKYKMSSDGRTHTLTVMTEEQEDEG--VYTCIA   82 (197)
T ss_dssp             EEETTSEEEEEEEEEEES---CCEEEEEETTEEECC----CSSEEEEESSSEEEEEEECCSGGGCE--EEEEEE
T ss_pred             EEeCCCcEEEEEEEecCC---CCEEEEEECCEECCC----CccEEEEeCCCEEEEEEecCCccCCE--EEEEEE
Confidence            577999999999974322   225789999977644    5788888887   7999998877642  445544

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=96.73  E-value=0.0012  Score=43.23  Aligned_cols=69  Identities=14%  Similarity=0.232  Sum_probs=42.6

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCC--e--eeecC---------cCCCceEEEccC------ccEEEEeEeeecC
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V--NIYLN---------TDTGGKYVVLSS------GDLYVQIRLSITG   79 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd--~--~I~p~---------~~~dgKY~vlps------GeL~Ir~v~~~~~   79 (98)
                      +..|.+|+|.|.+++-...-.....|.+++  .  .+|..         ....+|..++.+      ..|.|+||+.+|.
T Consensus        17 g~vG~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~R~~~~~~~~~~g~~sL~I~~v~~~D~   96 (125)
T 4gos_A           17 GNIGEDGILSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQVIVGNASLRLKNVQLTDA   96 (125)
T ss_dssp             EETTSCEEEEEEECCCSCGGGCEEEEEETTCSSBSEEEETTEECCTTBCGGGTTCEEECTTTGGGTBCCEEESSCCGGGC
T ss_pred             EeCCCCEEEEEEEcCCcccCcEEEEEEEeccCceEEEEEeecccccccCccccceEEEecCCccCCeEEEEECCCChHHC
Confidence            447999999999853322222346798875  1  22211         123567777643      3699999999885


Q ss_pred             Ccceeeeeeh
Q psy5692          80 NLSVKKMKVE   89 (98)
Q Consensus        80 n~~~~~~~~~   89 (98)
                        ..=.|.+.
T Consensus        97 --G~Y~C~v~  104 (125)
T 4gos_A           97 --GTYKCYII  104 (125)
T ss_dssp             --EEEEEEEE
T ss_pred             --EEEEEEEE
Confidence              34555554

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=96.73  E-value=0.0037  Score=38.78  Aligned_cols=69  Identities=16%  Similarity=0.178  Sum_probs=43.9

Q ss_pred             ceeecCeEEEEccCCCC---ccceeEEeEEccCC-eee--e-cC--------cCCCceEEEc-cCccEEEEeEeeecCCc
Q psy5692          18 NVILGNTAVLRCQIPSY---MSEYIIVTSWIQDD-VNI--Y-LN--------TDTGGKYVVL-SSGDLYVQIRLSITGNL   81 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~---V~d~V~V~SW~~Dd-~~I--~-p~--------~~~dgKY~vl-psGeL~Ir~v~~~~~n~   81 (98)
                      .+..|.+|+|.|.+...   -.+. ....|.+++ ..+  + .+        ....||..+. .++.|.|++++.+|.  
T Consensus         5 ~~~~G~~v~L~C~~~~~~~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~--   81 (110)
T 1ncn_A            5 QAYFNETADLPCQFANSQNQSLSE-LVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDK--   81 (110)
T ss_dssp             EEETTSCEEEECCCCCTTCCCGGG-EEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGC--
T ss_pred             EEEeCCCEEEEeEeCCCCcCCCcc-EEEEEEeCCCccEEEEECCcccccccCcccCCcEEEECCCEEEEEcCCChHHC--
Confidence            35689999999998422   1222 257898876 212  2 11        1234677665 478999999999885  


Q ss_pred             ceeeeeeh
Q psy5692          82 SVKKMKVE   89 (98)
Q Consensus        82 ~~~~~~~~   89 (98)
                      ..=.|.+.
T Consensus        82 G~Y~C~v~   89 (110)
T 1ncn_A           82 GLYQCIIH   89 (110)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            44455543

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=96.67  E-value=0.001  Score=44.28  Aligned_cols=59  Identities=12%  Similarity=0.044  Sum_probs=39.9

Q ss_pred             ceeecCeEEEEccCCCCcc--ceeEEeEEccCCeeeecCcCCCceEEEccC------ccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMS--EYIIVTSWIQDDVNIYLNTDTGGKYVVLSS------GDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~--d~V~V~SW~~Dd~~I~p~~~~dgKY~vlps------GeL~Ir~v~~~~~   79 (98)
                      .|..|.+++|.|.+...-.  .--....|.+++..+.   ...+|+.++++      +.|.|++++.+|.
T Consensus        13 ~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~---~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~   79 (202)
T 3bp6_B           13 TVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTS---LQSERATLLEEQLPLGKALFHIPSVQVRDS   79 (202)
T ss_dssp             EEETTSCEEEEEEECTTC---CTTEEEEEEECC--CC---CBCSSCEECGGGGGGTEEEEEECSCCGGGC
T ss_pred             EEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCccc---ccCCceEEeeccccCCeeEEEECCCCHHHC
Confidence            4678999999999865421  1114578999542221   13578888765      7899999988775

>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule, IGV, immunoglobulin variable, IGC, immunoglobulin constant, signaling protein; 2.04A {Homo sapiens}

Probab=96.65  E-value=0.0044  Score=40.39  Aligned_cols=68  Identities=13%  Similarity=0.158  Sum_probs=47.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC--eeeecCc------------CCCceEEEcc-CccEEEEeEeeecCCcc
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VNIYLNT------------DTGGKYVVLS-SGDLYVQIRLSITGNLS   82 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd--~~I~p~~------------~~dgKY~vlp-sGeL~Ir~v~~~~~n~~   82 (98)
                      .++.|.+++|.|.++..  .-+....|.+..  ..+++..            ...+|..+.. +|.|.|+|++.+|.-  
T Consensus        10 ~~~~G~sVtL~c~~~~~--~~~~~i~W~~~~~ia~~~~~~~~~~~~~~~~~~~f~~Rl~l~~~~~SL~I~nl~~~DsG--   85 (111)
T 2pkd_A           10 NGILGESVTFPVNIQEP--RQVKIIAWTSKTSVAYVTPGDSETAPVVTVTHRNYYERIHALGPNYNLVISDLRMEDAG--   85 (111)
T ss_dssp             EEETTSCEEECCCCCTT--CCEEEEEEESSSEEEEEECCCSSSCCEEEECSGGGTTCEEECTTTCCEEECSCCGGGCE--
T ss_pred             EEEeCCCEEEeCccCCC--CeeeEEEEecCCEEEEEECCCCCCcceeEEeCCCcCCcEEEeCCCEEEEECCCCHHHCE--
Confidence            45689999999998742  345578888765  3333422            2347788874 899999999999864  


Q ss_pred             eeeeeeh
Q psy5692          83 VKKMKVE   89 (98)
Q Consensus        83 ~~~~~~~   89 (98)
                      .=+|.|.
T Consensus        86 ~Y~c~i~   92 (111)
T 2pkd_A           86 DYKADIN   92 (111)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            3455543

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=96.65  E-value=0.0035  Score=43.97  Aligned_cols=70  Identities=10%  Similarity=0.004  Sum_probs=41.1

Q ss_pred             EeeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEE---eEeeecCCcceeeeee
Q psy5692          13 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQ---IRLSITGNLSVKKMKV   88 (98)
Q Consensus        13 V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir---~v~~~~~n~~~~~~~~   88 (98)
                      -.+. .+..|.++.|.|.+..+-.-   ..+|.+++..+......++|+.+.++|.|.|.   +++.+|  +..-.|..
T Consensus       113 ~~~~-~v~~g~~~~l~C~~~G~P~P---~v~W~~~~~~~~~~~~~~~r~~~~~~g~l~il~i~~v~~~D--~G~YtC~A  185 (203)
T 4fa8_A          113 SERS-QFPDFSVLTVTCTVNAFPHP---HVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPW--HLPVTCVG  185 (203)
T ss_dssp             EEEC-CSSCSCCEEEEEEEEEESCC---EEEECCC------------CCEECTTSCEEEEEEEEECSSC--CCCEEEEE
T ss_pred             ceeE-EEcCCCEEEEEEEcCCCCCC---EEEEEECCeeecCcccccceEEEeCCCCEEEEEECCCCHHH--CEEEEEEE
Confidence            3444 67889999999997543332   35799887433222345789999999999886   555554  23455544

>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B*

Probab=96.64  E-value=0.0013  Score=42.15  Aligned_cols=69  Identities=19%  Similarity=0.307  Sum_probs=45.5

Q ss_pred             ceeecCeEEEEccCCCCc-cceeEEeEEccCC----eeeec-CcCCCceEEEccCc--------cEEEEeEeeecCCcce
Q psy5692          18 NVILGNTAVLRCQIPSYM-SEYIIVTSWIQDD----VNIYL-NTDTGGKYVVLSSG--------DLYVQIRLSITGNLSV   83 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V-~d~V~V~SW~~Dd----~~I~p-~~~~dgKY~vlpsG--------eL~Ir~v~~~~~n~~~   83 (98)
                      .|..|.+|.|.|.+.+.- .+-.....|.+..    ..++. .....||+.+.++.        .|.|++++.+|.  +.
T Consensus        18 ~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~g~~~~~~~~~~~~R~~~~~~~~~~~~~~~sL~I~~v~~~Ds--G~   95 (120)
T 3noi_A           18 RTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDA--SI   95 (120)
T ss_dssp             EEETTSCEEECCEECCCTTSCCCEEEEEEESSCSTTCBCCTTCTTTTTCEECCCHHHHHTTCBCCEEESSCCGGGC--EE
T ss_pred             EEEcCCCEEEEeeecCCCCCCceeEEEEEeccCCCCceecccccccCCcEEeecccccccCCcEEEEEecCChhhC--EE
Confidence            456899999999986543 2223457899874    33321 22356899886433        799999998884  44


Q ss_pred             eeeee
Q psy5692          84 KKMKV   88 (98)
Q Consensus        84 ~~~~~   88 (98)
                      =-|.+
T Consensus        96 Y~C~v  100 (120)
T 3noi_A           96 YVCRV  100 (120)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44544

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=96.60  E-value=0.002  Score=44.67  Aligned_cols=64  Identities=13%  Similarity=0.260  Sum_probs=44.7

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+..|.++.|.|.+..+-..   ...|.+++..+.+  ..+++|.+.++|.|.|.+++..|.-  .-.|.+
T Consensus       109 ~v~~G~~v~l~C~~~~~p~~---~v~W~~~~~~~~~--~~~~~~~~~~~~~L~i~~v~~~d~G--~Y~C~~  172 (291)
T 2wim_A          109 EFKQGEDAEVVCRVSSSPAP---AVSWLYHNEEVTT--ISDNRFAMLANNNLQILNINKSDEG--IYRCEG  172 (291)
T ss_dssp             EEETTSCEEECCCCBCSSCC---EEEEECC----CB--CCCSSEEECTTSCEEETTCCGGGCE--EEEEEE
T ss_pred             hhcCCCCEEEEEEEccCCCC---EEEEEECCccccc--cCCceEEEccCCCEEEEecchhhCE--EEEEEE
Confidence            46789999999998654322   3789999865533  2478999999999999999887753  344443

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=96.56  E-value=0.0026  Score=39.50  Aligned_cols=68  Identities=18%  Similarity=0.346  Sum_probs=43.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC--------eeeecC-----cCCCceEEEcc-----CccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--------VNIYLN-----TDTGGKYVVLS-----SGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd--------~~I~p~-----~~~dgKY~vlp-----sGeL~Ir~v~~~~~   79 (98)
                      .|..|.+|+|.|.+.+.-. .. ...|.+..        ..++..     ....+||.+..     ++.|.|++++.+|.
T Consensus         8 ~~~~G~~v~L~C~~~~~~~-~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~Ds   85 (116)
T 2or8_A            8 KGVVGHPVTLPCTYSTYRG-IT-TTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVESDS   85 (116)
T ss_dssp             EEETTSCEEECCBCCCTTC-CC-CEEEEESCCCSSSCTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCGGGC
T ss_pred             EEEeCCcEEEEEEeeCCCC-Cc-EEEEEEECCCCCCceEEEEEeCCcccCcCCCCeEEEecCCCCCeEEEEECCCCcccC
Confidence            4668999999999854211 22 36898875        223321     12368888742     46799999998774


Q ss_pred             Ccceeeeeeh
Q psy5692          80 NLSVKKMKVE   89 (98)
Q Consensus        80 n~~~~~~~~~   89 (98)
                        ..=.|.+.
T Consensus        86 --G~Y~C~v~   93 (116)
T 2or8_A           86 --GLYCCRVE   93 (116)
T ss_dssp             --EEEEEEEC
T ss_pred             --EEEEEEEE
Confidence              34445543

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=96.55  E-value=0.0021  Score=42.79  Aligned_cols=66  Identities=17%  Similarity=0.163  Sum_probs=45.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .|..|.++.|.|.+...-.   ....|.+++..+.+............++.|.|++++..|.-  .-.|.+
T Consensus        30 ~v~~G~~v~L~C~~~~~p~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G--~Y~C~~   95 (231)
T 3ojm_B           30 AVPAANTVKFRCPAGGNPM---PTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG--NYTCVV   95 (231)
T ss_dssp             EEETTSCEEEECCEEEESC---CEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCE--EEEEEE
T ss_pred             EEccCCCEEEEEecccCCC---CeEEEEECCccccccccccceeeecCcceEEEecCCcccCE--EEEEEE
Confidence            5779999999999754322   24789999977765443444455556778999988877643  444544

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=96.54  E-value=0.0016  Score=47.21  Aligned_cols=75  Identities=17%  Similarity=0.229  Sum_probs=52.4

Q ss_pred             EEEEeeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeee---cCCcceeee
Q psy5692          10 EINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSI---TGNLSVKKM   86 (98)
Q Consensus        10 ev~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~---~~n~~~~~~   86 (98)
                      ..+-.+. .|+.|.+++|.|.+...-  -.....|.+|+..+.+  ..++++.+.++|.|+|.++...   ...+..-.|
T Consensus        25 ~~~P~~~-~v~~G~~v~L~C~~~~~~--p~~~v~W~k~g~~~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~D~G~Y~C   99 (403)
T 3laf_A           25 VSEPSDA-VTMRGGNVLLNCSAESDR--GVPVIKWKKDGLILAL--GMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQC   99 (403)
T ss_dssp             EECCCCE-EECTTCCEEECCEEECTT--CCCEEEEEETTEECCT--TSCTTEEECTTSCEEECSCCCBTTBCSSCEEEEE
T ss_pred             EeCCCce-EEecCCcEEEEEEcCCCC--CCceEEEEECCEECcc--CCcccEEEecCCcEEEeeeeccCCCCCcceEEEE
Confidence            3344455 788999999999986431  1235789999977743  2468999999999999998432   223456667


Q ss_pred             eeh
Q psy5692          87 KVE   89 (98)
Q Consensus        87 ~~~   89 (98)
                      .+.
T Consensus       100 ~~~  102 (403)
T 3laf_A          100 EAS  102 (403)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            664

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=96.52  E-value=0.0011  Score=50.78  Aligned_cols=58  Identities=24%  Similarity=0.273  Sum_probs=43.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      .|..|.+++|.|.+. .-.   ...+|.+++..+......++|+.+.++|.|.|++++.+|.
T Consensus       352 ~v~~G~~v~L~C~~~-~p~---p~i~W~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~  409 (440)
T 3zyj_A          352 NVTEGMAAELKCRAS-TSL---TSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDT  409 (440)
T ss_dssp             EECTTSCCEECCEES-STT---SEEEEECTTSCEEESSSCCSSEEECTTCCEEESSCCSTTC
T ss_pred             eeccCceEEEEeecC-CCC---CceEEEeCCCceeeccCCCceEEEccCCeEEEccCChhhC
Confidence            566899999999973 222   2457998773333434456899999999999999998874

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=96.49  E-value=0.0015  Score=40.80  Aligned_cols=67  Identities=10%  Similarity=0.100  Sum_probs=41.0

Q ss_pred             ceeecCeEEEEccCCCCcc-ceeEEeEEccCCeeeecCcCCCceEEEc---------cCccEEEEeEeeecCCcceeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMS-EYIIVTSWIQDDVNIYLNTDTGGKYVVL---------SSGDLYVQIRLSITGNLSVKKMK   87 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~-d~V~V~SW~~Dd~~I~p~~~~dgKY~vl---------psGeL~Ir~v~~~~~n~~~~~~~   87 (98)
                      .|..|.+|+|.|.+...-. +. -...|++++..... ...+++|.+.         .++.|.|++++..|.  ..-.|.
T Consensus        15 ~v~~G~~v~L~C~~~g~p~~~~-p~v~W~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~--G~Y~C~   90 (108)
T 3cx2_A           15 EVTVGGSITFSARVAGASLLKP-PVVKWFKGKWVDLS-SKVGQHLQLHDSYDRASKVYLFELHITDAQPAFT--GSYRCE   90 (108)
T ss_dssp             EEETTCCEEEEEEEECC-CCSC-CEEEEEETTTEEGG-GGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGC--EEEEEE
T ss_pred             EEeCCCCEEEEEEECCCccCCC-cEEEEccCCccccc-ccCCceEEEeeEEecccccceEEEEEecCCCccC--EEEEEE
Confidence            4678999999999843221 11 24689998732211 1124466543         257899999998874  344454


Q ss_pred             e
Q psy5692          88 V   88 (98)
Q Consensus        88 ~   88 (98)
                      +
T Consensus        91 a   91 (108)
T 3cx2_A           91 V   91 (108)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=96.49  E-value=0.0025  Score=42.58  Aligned_cols=68  Identities=16%  Similarity=0.305  Sum_probs=43.0

Q ss_pred             ceeecCeEEEEccCC---CCccceeEEeEEccCCeee--ecC---------cCCCceEEEccC------ccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIP---SYMSEYIIVTSWIQDDVNI--YLN---------TDTGGKYVVLSS------GDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IP---s~V~d~V~V~SW~~Dd~~I--~p~---------~~~dgKY~vlps------GeL~Ir~v~~~   77 (98)
                      .|..|.+++|.|.++   ..-.+. ....|.+++..+  |..         ....+|+.++++      +.|.|++++.+
T Consensus        12 ~~~~G~~v~L~C~~~~~p~~~~~~-~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~   90 (222)
T 3sbw_C           12 VVEYGSNMTIECKFPVEKQLDLAA-LIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQ   90 (222)
T ss_dssp             EEETTSCEEEEEECCCCSSCCTTT-CEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSCCGG
T ss_pred             EEEcCCcEEEEeEecCCCCCCCcc-EEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCcccc
Confidence            456899999999973   222222 246899987333  221         112478888765      48999999888


Q ss_pred             cCCcceeeeee
Q psy5692          78 TGNLSVKKMKV   88 (98)
Q Consensus        78 ~~n~~~~~~~~   88 (98)
                      |.-  .-.|.+
T Consensus        91 D~G--~Y~C~~   99 (222)
T 3sbw_C           91 DAG--VYRCMI   99 (222)
T ss_dssp             GCE--EEEEEE
T ss_pred             cCe--EEEEEE
Confidence            753  344443

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=96.48  E-value=0.00091  Score=44.87  Aligned_cols=55  Identities=9%  Similarity=-0.113  Sum_probs=34.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc----CccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS----SGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp----sGeL~Ir~v~~~~~   79 (98)
                      .|..|.++.|.|.+...    .....|.+++..+.|.   +.++.+.+    .+.|.|++++.+|.
T Consensus       111 ~v~~G~~v~L~C~~~~~----~~~v~W~k~g~~~~~~---~~~~~~~~~~~~~~~L~i~~v~~~D~  169 (198)
T 1ugn_A          111 VVNSGGNVTLQCDSQVA----FDGFILCKEGEDEHPQ---CLNSQPHARGSSRAIFSVGPVSPSRR  169 (198)
T ss_dssp             EEETTCCEEEEEECSSC----CSEEEEEEC------C---EEEC------CCEEEEEECCCCTTSC
T ss_pred             ccCCCCcEEEEEecCCC----CcEEEEEECCCccCCc---cccccccCCCcceeEEEecccCcccC
Confidence            67899999999998765    2367899998666541   23444444    37899999887764

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=96.47  E-value=0.00037  Score=41.86  Aligned_cols=68  Identities=10%  Similarity=0.085  Sum_probs=40.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcC-CCceEEE------ccCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTD-TGGKYVV------LSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~-~dgKY~v------lpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+..|.++.|.|.+...-... ....|.+++..+..... ...+|..      ..++.|.|++++.+|.  ..-.|.+
T Consensus        21 ~v~~G~~v~L~C~~~~~~~~~-~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~--G~Y~C~a   95 (112)
T 3so5_A           21 SAIXGSDVSFTCSAASSSDSP-MTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSE--GXYQCVI   95 (112)
T ss_dssp             EECTTCCEEEEEEEEESCCCC-CEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGC--EEEEEEE
T ss_pred             EEECCCCEEEEEEEecCCCCC-EEEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccccC--CeEEEEE
Confidence            677899999999975332212 23589999976643110 0012211      1247899999988774  3334443

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=96.46  E-value=0.0026  Score=46.07  Aligned_cols=56  Identities=20%  Similarity=0.294  Sum_probs=43.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~   78 (98)
                      .+..|.++.|.|.++..-..  ....|.+++..+.+   .+.++.+.++|.|+|.+++..|
T Consensus       127 ~v~~G~~v~l~C~~~~~~p~--~~v~W~~~~~~~~~---~~~~~~~~~~~~l~i~~v~~~d  182 (404)
T 3p3y_A          127 VVQEGAPLTLQCNPPPGLPS--PVIFWMSSSMEPIT---QDKRVSQGHNGDLYFSNVMLQD  182 (404)
T ss_dssp             EEETTSCEEECCCCCCCSSC--CEEEEECTTSCBCC---CCSSEEECTTSCEEESSCCSGG
T ss_pred             EEccCCcEEEEeCCCCCCCC--CeEEEeCCCccccC---CCCcEEEcCCCcEEEEeeeecc
Confidence            56789999999998433222  36789999844333   4679999999999999999888

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=96.46  E-value=0.004  Score=42.07  Aligned_cols=66  Identities=17%  Similarity=0.177  Sum_probs=46.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .|..|.++.|.|.+...-.   ....|.+++..+.+.....+......++.|.|++++..|.-  .-.|.+
T Consensus        26 ~v~~G~~v~L~C~~~~~p~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G--~Y~C~~   91 (241)
T 3grw_A           26 AVPAANTVRFRCPAAGNPT---PSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRG--NYTCVV   91 (241)
T ss_dssp             EEETTSEEEEECCEECSSC---CEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCE--EEEEEE
T ss_pred             EEcCCCeEEEEEEecCCCC---ceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCE--EEEEEE
Confidence            4568999999999864422   26789999977766544455566667888999988877643  444443

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=96.45  E-value=0.0018  Score=42.26  Aligned_cols=67  Identities=16%  Similarity=0.309  Sum_probs=44.8

Q ss_pred             ceeecCeEEEEcc-CCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQ-IPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~-IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .|..|.++.|.|. ....-.  .....|.+++..+... ..+.++....+|.|.|++++.+|.  ..-.|.+.
T Consensus        19 ~v~~G~~v~L~C~~~~~~p~--~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~L~i~~v~~~d~--G~Y~C~~~   86 (201)
T 3s97_C           19 RVKEGKGMVLLCDPPYHFPD--DLSYRWLLNEFPVFIT-MDKRRFVSQTNGNLYIANVEASDK--GNYSCFVS   86 (201)
T ss_dssp             EEETTCCEEECCCCCSEESS--CCEEEEEESSTTCBCC-CSSSEEECTTTCCEEESSCCGGGC--EEEEEEEE
T ss_pred             EEECCCCEEEeccccccCCC--ceEEEEEECCceeeee-eCCCeEEEcCCCeEEECcCCcccC--eEEEEEEE
Confidence            5678999999999 332211  1356899998555321 124455666899999999988775  34556554

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=96.45  E-value=0.0022  Score=46.40  Aligned_cols=73  Identities=18%  Similarity=0.224  Sum_probs=49.8

Q ss_pred             eeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecC---cCCCceEEEccCccEEEEeEeeecCC-cceeeeeeh
Q psy5692          14 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN---TDTGGKYVVLSSGDLYVQIRLSITGN-LSVKKMKVE   89 (98)
Q Consensus        14 ~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~---~~~dgKY~vlpsGeL~Ir~v~~~~~n-~~~~~~~~~   89 (98)
                      .+. .+..|.++.|.|.++..-..  ...+|.+++....|.   ...++++.+.++|.|.|.+++.+|.- ...-.|.+.
T Consensus       108 ~~~-~~~~G~~v~l~C~~~~~~p~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~~~~Y~C~a~  184 (395)
T 1bih_A          108 HEK-TPIEGRPFQLDCVLPNAYPK--PLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAK  184 (395)
T ss_dssp             EEE-CCBTTEEEEECCCCCEEESC--CEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEE
T ss_pred             cce-eeeeCCcEEEEecCCCCCCC--CeEEEEecCCCcCcccccccccccEEEcCCCcEEEEEEeeccCCCceEEEEEEE
Confidence            344 77899999999998422212  467899985211222   22378999999999999999988764 225556553

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=96.44  E-value=0.003  Score=41.46  Aligned_cols=63  Identities=21%  Similarity=0.353  Sum_probs=44.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc--Cc--cEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS--SG--DLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp--sG--eL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+..|.++.|.|.+.+.-.   ...+|.+++..|.+   .+.+|.+..  +|  .|.|++++.+|.-  .-.|.+
T Consensus        15 ~v~~G~~v~l~C~~~~~p~---~~v~W~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~~~~~d~G--~Y~C~~   81 (197)
T 2j8h_A           15 NVRYQSNATLVCKVTGHPK---PIVKWYRQGKEIIA---DGLKYRIQEFKGGYHQLIIASVTDDDAT--VYQVRA   81 (197)
T ss_dssp             EEETTSCEEEEEEEECSSC---CEEEEEETTEECCC---CSSSEEEEEETTTEEEEEECSCCGGGCS--EEEEEE
T ss_pred             EEcCCCEEEEEEEEeecCC---CEEEEEECCEECcc---CCCcEEEEEcCCCEEEEEECcCCHHhCE--EEEEEE
Confidence            5778999999999854322   34789999977654   356777753  44  8999999887753  444544

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=96.44  E-value=0.003  Score=42.31  Aligned_cols=70  Identities=14%  Similarity=0.135  Sum_probs=47.2

Q ss_pred             ceeecCeEEEEccCCCCc--cceeEEeEEccCC--eeee--c-----CcCCCceEEEcc------CccEEEEeEeeecCC
Q psy5692          18 NVILGNTAVLRCQIPSYM--SEYIIVTSWIQDD--VNIY--L-----NTDTGGKYVVLS------SGDLYVQIRLSITGN   80 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V--~d~V~V~SW~~Dd--~~I~--p-----~~~~dgKY~vlp------sGeL~Ir~v~~~~~n   80 (98)
                      .|..|.+++|.|.+...-  ..-.....|.+++  ..++  .     .....+|+.+++      ++.|.|++++..|.-
T Consensus         6 ~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~G   85 (222)
T 4i0k_A            6 VALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTDEG   85 (222)
T ss_dssp             CCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGGCS
T ss_pred             EEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccccCE
Confidence            567999999999986431  2233577899876  2221  1     112468888887      788999999988753


Q ss_pred             cceeeeeeh
Q psy5692          81 LSVKKMKVE   89 (98)
Q Consensus        81 ~~~~~~~~~   89 (98)
                        .-.|.+.
T Consensus        86 --~Y~C~~~   92 (222)
T 4i0k_A           86 --SYTCFVS   92 (222)
T ss_dssp             --CEEEEEE
T ss_pred             --EEEEEEE
Confidence              4455543

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=96.43  E-value=0.0038  Score=41.66  Aligned_cols=67  Identities=24%  Similarity=0.336  Sum_probs=46.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCc----CCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT----DTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~----~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+..|.++.|.|.++.....  ...+|.+++..|....    ..++++.+..+|.|.|.+++.+|.-  .-.|.+
T Consensus       119 ~~~~g~~v~l~C~~~~g~p~--~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G--~Y~C~a  189 (217)
T 2vr9_A          119 RVAKGETALLECGPPKGIPE--PTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEG--NYKCIA  189 (217)
T ss_dssp             EECTTSCEEECCBCCCEESC--CEEEEEETTEEECCCCCC---CCCSEEEETTTEEEESSCCSTTCE--EEEEEE
T ss_pred             EEcCCCeEEEEEECCCCCCC--CeEEEEECCcCCCcccccccccCCcEEecCCCcEEEeeCCHHHCe--EEEEEE
Confidence            57789999999997322111  2378999997664221    2467888889999999998877653  345554

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=96.42  E-value=0.0013  Score=44.79  Aligned_cols=62  Identities=10%  Similarity=0.041  Sum_probs=42.1

Q ss_pred             ceeec--CeEEEEccCCCCccceeEEeEEccC--CeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILG--NTAVLRCQIPSYMSEYIIVTSWIQD--DVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirG--NtAVLkC~IPs~V~d~V~V~SW~~D--d~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .|..|  .+++|.|.+..-  .  .-.+|.++  +..+.+   .+.++...+.+.|.|++++.+|.-  .-.|..
T Consensus        18 ~v~eG~~~~v~L~C~~~~p--~--~~v~w~~~~~~g~~~~---~~~~~~~~~~~~l~I~~v~~~D~G--~Y~C~a   83 (213)
T 2x1w_L           18 YITENKNKTVVIPCLGSIS--N--LNVSLCARYPEKRFVP---DGNRISWDSKKGFTIPSYMISYAG--MVFCEA   83 (213)
T ss_dssp             EECCSTTCEEEECCCBSST--T--CCEEEEEETTTEEECC---CSSSCEEETTTEEEEEGGGTTTCS--EEEEEE
T ss_pred             EEecCCCccEEEeeccCCC--C--cEEEEEhhcCCCcccc---CCCcccccCCccEEEccCChhcCc--eEEEEE
Confidence            56789  999999998531  2  34567664  444444   245677778889999999888753  455554

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=96.42  E-value=0.001  Score=47.68  Aligned_cols=75  Identities=16%  Similarity=0.184  Sum_probs=48.7

Q ss_pred             eEEEEeeeeceeecCeEEEEccCCCCc----cceeEEeEEccCCeee-ecCcCCCceEEEccCccEEEEeEeeecCCcce
Q psy5692           9 YEINVNYEHNVILGNTAVLRCQIPSYM----SEYIIVTSWIQDDVNI-YLNTDTGGKYVVLSSGDLYVQIRLSITGNLSV   83 (98)
Q Consensus         9 Yev~V~d~~~VirGNtAVLkC~IPs~V----~d~V~V~SW~~Dd~~I-~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~   83 (98)
                      +...-.+. .|..|.++.|.|.+..+-    ..-.....|.+++..+ .+ ...+.++. ..+|.|.|.+++.+|.  ..
T Consensus        21 ~~~~~~~~-~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~-~~~~~~~~-~~~~~L~i~~v~~~D~--G~   95 (339)
T 3o4o_C           21 RGRHYKRE-FRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVP-GEEETRMW-AQDGALWLLPALQEDS--GT   95 (339)
T ss_dssp             EEECSCCE-EEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCS-CCSSSCEE-EETTEEEESSBCTTCC--EE
T ss_pred             hCcCceEE-EEECCccEEEEeccccccccccCCCCceEEEEECCCCcccC-ccccccEE-eeCCeEEECCCCcccC--EE
Confidence            33444555 889999999999986221    1223356899998553 33 22245665 5789999999988764  34


Q ss_pred             eeeee
Q psy5692          84 KKMKV   88 (98)
Q Consensus        84 ~~~~~   88 (98)
                      -.|.+
T Consensus        96 Y~C~~  100 (339)
T 3o4o_C           96 YVCTT  100 (339)
T ss_dssp             EECCE
T ss_pred             EEEEE
Confidence            44544

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=96.42  E-value=0.00048  Score=43.29  Aligned_cols=62  Identities=11%  Similarity=0.164  Sum_probs=44.7

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc---CccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS---SGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp---sGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .|..|.++.|.|.+...-.   ....|.+++..|.+    +++|.+..   ++.|.|++++..|.-  .-.|.+
T Consensus        25 ~v~~G~~v~L~C~~~g~p~---p~v~W~k~g~~l~~----~~~~~~~~~~~~~~L~I~~v~~~D~G--~Y~C~a   89 (106)
T 1nct_A           25 TVYEGESARFSCDTDGEPV---PTVTWLRKGQVLST----SARHQVTTTKYKSTFEISSVQASDEG--NYSVVV   89 (106)
T ss_dssp             EESSSSCEECCEEEECSSC---CBCCBCSSSSCCTT----CSSEEEEECSSEEEEEECCCCSSCCS--EEEECC
T ss_pred             EEeCCCcEEEEEEEEEcCC---CEEEEEECCEECCC----CCCEEEEECCCEEEEEECcCCchhCE--EEEEEE
Confidence            5678999999999743332   24689999866543    57888775   578999999887753  445544

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=96.41  E-value=0.0018  Score=44.92  Aligned_cols=64  Identities=17%  Similarity=0.293  Sum_probs=47.7

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+..|.++.|.|.+..+-..   ...|.+++..+.+  ..+.+|.+.++|.|.|.+++.+|.-  .-.|.+
T Consensus       111 ~~~~g~~v~l~C~~~~~p~~---~v~W~~~~~~~~~--~~~~~~~~~~~~~L~i~~~~~~d~G--~Y~C~a  174 (291)
T 1qz1_A          111 EFKEGEDAVIVCDVVSSLPP---TIIWKHKGRDVIL--KKDVRFIVLSNNYLQIRGIKKTDEG--TYRCEG  174 (291)
T ss_dssp             EEETTSCEEECCEEECSSCC---EEEEEETTSCSST--TCCTTEEECTTSCEEETTCCGGGCE--EEEEEE
T ss_pred             cccCCCeEEEEEEeccCCCC---EEEEEECCEEccc--CCCceEEEccCCcEEEccCccccCe--EEEEEE
Confidence            57789999999998654332   4789999866533  2467999999999999999887752  444543

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=96.40  E-value=0.0038  Score=48.99  Aligned_cols=59  Identities=19%  Similarity=0.299  Sum_probs=42.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCee-----e--ec--------CcCCCceEEEccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVN-----I--YL--------NTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~-----I--~p--------~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      .|..|.+++|.|...+.   -.....|.+++..     |  |.        .....||+.+.++|.|.|++++.+|.
T Consensus        10 ~v~~G~~v~L~C~~~~~---~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~gr~~~~~~~sL~I~~v~~~D~   83 (642)
T 1e07_A           10 NVAEGKEVLLLVHNLPQ---HLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDT   83 (642)
T ss_pred             cccccccEEEEEccCCC---CceEEEEECCcccCCcceEEEEEccccccccCccccCceeeccCCcEEECCCCcccC
Confidence            67899999999996443   2346889986521     2  11        11236799999999999999998875

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=96.40  E-value=0.0019  Score=40.68  Aligned_cols=65  Identities=17%  Similarity=0.297  Sum_probs=42.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----e-eeecC--cCCCceEEEccCc------cEEEEeEeeecCCcce
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----V-NIYLN--TDTGGKYVVLSSG------DLYVQIRLSITGNLSV   83 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~-~I~p~--~~~dgKY~vlpsG------eL~Ir~v~~~~~n~~~   83 (98)
                      .|..|.+|+|.|.+....    ....|.+.+     . .++-.  ....|||.+..++      .|.|++++.+|.  ..
T Consensus        12 ~v~~G~~v~L~C~~~~~~----~~v~W~r~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~Ds--G~   85 (113)
T 1h5b_A           12 SLHEGTDSALRCNFTTTM----RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDS--GT   85 (113)
T ss_dssp             EEETTCCEEEEEEESSCC----SEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGC--EE
T ss_pred             EEecCCcEEEEEEECCCC----ceEEEEEECCCCCeEEEEEECCCCccCCceEEEEccCCCCEEEEEECCCChhhC--EE
Confidence            456899999999986532    247898753     1 22211  1236899987655      899999998764  34


Q ss_pred             eeeee
Q psy5692          84 KKMKV   88 (98)
Q Consensus        84 ~~~~~   88 (98)
                      =.|.+
T Consensus        86 Y~C~~   90 (113)
T 1h5b_A           86 YFCAA   90 (113)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44443

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=96.40  E-value=0.0049  Score=43.18  Aligned_cols=66  Identities=24%  Similarity=0.281  Sum_probs=41.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC------eeeecCcC-------CCc-eEEEccCcc--EEEEeEeeecCCc
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIYLNTD-------TGG-KYVVLSSGD--LYVQIRLSITGNL   81 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd------~~I~p~~~-------~dg-KY~vlpsGe--L~Ir~v~~~~~n~   81 (98)
                      .|..|.+|+|.|.++..-..   ...|++..      ..++....       ..+ ||.+..++.  |.|++++.+|.  
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~---~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~~Ds--   86 (253)
T 3to4_D           12 LVPRGQAVNLRCILKNSQYP---WMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQG--   86 (253)
T ss_dssp             EEESSCCEEEEEECSCTTCC---CEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESCSSC--
T ss_pred             EEeCCCcEEEEEEeCCCCcc---eEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCChhhC--
Confidence            45689999999987755443   34888731      12221110       123 999887665  99999999885  


Q ss_pred             ceeeeee
Q psy5692          82 SVKKMKV   88 (98)
Q Consensus        82 ~~~~~~~   88 (98)
                      ..-.|.+
T Consensus        87 G~Y~C~~   93 (253)
T 3to4_D           87 RTLYCTS   93 (253)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEE
Confidence            3444443

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=96.38  E-value=0.0038  Score=43.69  Aligned_cols=58  Identities=16%  Similarity=0.235  Sum_probs=38.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-ecC-------cCC-CceEEEcc----CccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN-------TDT-GGKYVVLS----SGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~p~-------~~~-dgKY~vlp----sGeL~Ir~v~~~~~   79 (98)
                      .|..|.+++|.|.+.+   .. ....|.+..     ..+ +..       ... .+||.+..    ++.|.|++++.+|.
T Consensus        37 ~v~~G~~v~L~C~~~~---~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~  112 (268)
T 3pl6_D           37 VTEKGKYVELRCDPIS---GH-TALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRTERGDS  112 (268)
T ss_dssp             EEETTCCEEEEEBCBT---TC-CEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECSCCGGGC
T ss_pred             EecCCCCEEEEEEeCC---CC-ceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECCCCcccC
Confidence            4678999999999751   22 356898721     111 110       011 28999886    66799999998875

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=96.34  E-value=0.0011  Score=50.85  Aligned_cols=57  Identities=21%  Similarity=0.356  Sum_probs=43.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      .|..|.+++|.|.+.    ... ..+|.+++..+.+....++|+.+.++|.|.|++++.+|.
T Consensus       363 ~v~~G~~~~l~C~~~----p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~g~L~i~~v~~~D~  419 (452)
T 3zyi_A          363 NISEGRMAELKCRTP----PMS-SVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDT  419 (452)
T ss_dssp             ECCTTSCCEECCBCC----TTS-EEEEECTTSCEECSSCCCSSCEECTTSCEECSSCCTTCC
T ss_pred             cccCCCEEEEEEeCC----CCC-cEEEEeCCCcEeccCCCCCCEEECCCCeEEEeecCHHHC
Confidence            567899999999975    111 358999774443444456799999999999999988874

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.34  E-value=0.0018  Score=39.73  Aligned_cols=57  Identities=19%  Similarity=0.289  Sum_probs=39.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCc--cEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG--DLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG--eL~Ir~v~~~~~   79 (98)
                      .|..|.++.|.|.+..+-.   ....|.+++..|.+.  ...++....+|  .|.|++++.+|.
T Consensus        20 ~v~~G~~v~l~C~~~g~p~---p~v~W~~~g~~~~~~--~~~~~~~~~~~~~~L~i~~v~~~D~   78 (110)
T 2dm3_A           20 TVQEGKLCRMDCKVSGLPT---PDLSWQLDGKPVRPD--SAHKMLVRENGVHSLIIEPVTSRDA   78 (110)
T ss_dssp             EEESSSCBCCEEEEECSSC---CEEECBBSSSBCCCC--SSEEEEECTTSCEEEEESSCCGGGC
T ss_pred             EEeCCCEEEEEEEEEEcCC---CEEEEEECCEECCCC--CceEEEEecCCeEEEEEeeCCcccC
Confidence            5678999999999854332   257899998666442  12233444455  799999988775

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=96.33  E-value=0.0039  Score=42.95  Aligned_cols=69  Identities=10%  Similarity=0.266  Sum_probs=45.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCee-------eec-------CcCCCceEEEc-----cCccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVN-------IYL-------NTDTGGKYVVL-----SSGDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~-------I~p-------~~~~dgKY~vl-----psGeL~Ir~v~~~~   78 (98)
                      .|..|.+++|.|.+.+.-.+-.....|.+++..       ++.       .....+|+.+.     .++.|.|++++.+|
T Consensus        16 ~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D   95 (268)
T 3mj6_A           16 RVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKAD   95 (268)
T ss_dssp             EEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEECSCCGGG
T ss_pred             EEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEECCCCHhH
Confidence            567899999999986554455677889986521       111       11224777764     34899999999877


Q ss_pred             CCcceeeeee
Q psy5692          79 GNLSVKKMKV   88 (98)
Q Consensus        79 ~n~~~~~~~~   88 (98)
                      .  ..-.|.+
T Consensus        96 ~--G~Y~C~~  103 (268)
T 3mj6_A           96 E--GIYTCEI  103 (268)
T ss_dssp             C--EEEEEEE
T ss_pred             C--EEEEEEE
Confidence            4  3444544

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=96.33  E-value=0.0036  Score=41.40  Aligned_cols=55  Identities=18%  Similarity=0.341  Sum_probs=39.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc--Cc--cEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS--SG--DLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp--sG--eL~Ir~v~~~~~   79 (98)
                      .|..|.++.|.|.+..+-.   ....|++++..|..    +.+|.+..  +|  .|.|++++..|.
T Consensus        52 ~v~~G~~v~L~C~~~g~P~---p~v~W~k~g~~~~~----~~~~~~~~~~~~~~~L~I~~v~~~D~  110 (154)
T 1fhg_A           52 EVVEGSAARFDCKVEGYPD---PEVMWFKDDNPVKE----SRHFQIDYDEEGNCSLTISEVCGDDD  110 (154)
T ss_dssp             EEETTSCEEEEEEEEEESC---CEEEEEETTEECCC----SSSEEEEECTTCEEEEEESSCCGGGC
T ss_pred             EEeCCCeEEEEEEEEEecC---CEEEEEECCEECCC----CCcEEEEECCCCeEEEEECCCChhcC
Confidence            6789999999999743222   24789999976643    56777752  33  799998887763

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=96.33  E-value=0.0012  Score=44.02  Aligned_cols=62  Identities=6%  Similarity=0.043  Sum_probs=40.9

Q ss_pred             ceeecCeEEEEccCCCCcc-ceeEEeEEccCCeeeecC--------cCCCceEEE--ccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMS-EYIIVTSWIQDDVNIYLN--------TDTGGKYVV--LSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~-d~V~V~SW~~Dd~~I~p~--------~~~dgKY~v--lpsGeL~Ir~v~~~~~   79 (98)
                      .|..|.+++|.|.++.... ...-.+.|.+++..++..        ....+|..+  ..++.|.|++++.+|.
T Consensus         5 ~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~   77 (201)
T 1dr9_A            5 TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDE   77 (201)
T ss_dssp             EEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGC
T ss_pred             EEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhC
Confidence            4678999999999864422 234568999998544311        112345443  2467899999988774

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=96.32  E-value=0.0035  Score=41.41  Aligned_cols=55  Identities=11%  Similarity=0.169  Sum_probs=41.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccC-c---cEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS-G---DLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlps-G---eL~Ir~v~~~~~   79 (98)
                      .+..|.++.|.|.+..+-..   ...|.+++..|.+    +++|.+..+ |   .|.|.+++.+|.
T Consensus       128 ~v~~g~~~~l~C~~~g~p~p---~v~W~~~~~~~~~----~~~~~~~~~~~~~~~L~i~~~~~~d~  186 (212)
T 2r15_A          128 TIQEGKALNLTCNVWGDPPP---EVSWLKNEKALAQ----TDHCNLKFEAGRTAYFTINGVSTADS  186 (212)
T ss_dssp             EEETTCCEEEEEEEECSSCC---EEEEEETTEEECC----CSSEEEEEETTTEEEEEESSCCGGGC
T ss_pred             EEccCCeEEEEEEEcCCCCc---eEEEEECCeECcc----CCCEEEEEcCCCEEEEEEcCcchHHC
Confidence            66789999999998654333   3789999977754    467777654 4   799998887764

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=96.30  E-value=0.0031  Score=41.15  Aligned_cols=63  Identities=13%  Similarity=0.208  Sum_probs=45.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCc---cEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG---eL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .+..|.++.|.|.+..+-..   ..+|.+++..|.+    +.+|.+.++|   .|.|.+++.+|.-  .-.|.+.
T Consensus       114 ~~~~g~~~~l~C~~~g~p~~---~v~W~~~~~~~~~----~~~~~~~~~~~~~~L~i~~~~~~d~G--~Y~C~a~  179 (194)
T 2a38_A          114 TVRQGSQVRLQVRVTGIPTP---VVKFYRDGAEIQS----SLDFQISQEGDLYSLLIAEAYPEDSG--TYSVNAT  179 (194)
T ss_dssp             EECTTEEEEEEEEEEEESCC---EEEEEETTEECCC----SSSEEEEEETTEEEEEEEEECGGGCE--EEEEEEE
T ss_pred             EEcCCCEEEEEEEEEEecCC---eEEEEECCEECCC----CCcEEEEEcCCEEEEEECCCChhcCe--EEEEEEE
Confidence            56789999999998543222   3789999977644    5688888877   5999999887643  3556543

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.30  E-value=0.00085  Score=42.34  Aligned_cols=58  Identities=19%  Similarity=0.229  Sum_probs=41.3

Q ss_pred             eeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEc-cCc---cEEEEeEeeecC
Q psy5692          14 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL-SSG---DLYVQIRLSITG   79 (98)
Q Consensus        14 ~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vl-psG---eL~Ir~v~~~~~   79 (98)
                      .+. .|..|.+|.|.|.+...-..   ...|++++..|.+    +++|.+. .+|   .|.|++++.+|.
T Consensus        21 ~~~-~v~~G~~v~l~C~~~g~p~p---~v~W~k~g~~l~~----~~~~~~~~~~~~~~~L~I~~v~~~D~   82 (115)
T 2cr6_A           21 EDV-DVQEGSSATFRCRISPANYE---PVHWFLDKTPLHA----NELNEIDAQPGGYHVLTLRQLALKDS   82 (115)
T ss_dssp             CEE-EEETTSCEECCCEEESTTCC---SCEEEESSCEECC----SSSCCBCCBTTTBCCBEECSCCTTTC
T ss_pred             ccE-EEeCCCcEEEEEEEcCCCCC---ccEEEECCEECCC----CCcEEEEEcCCCEEEEEEcCCChhhC
Confidence            444 67899999999998533322   3579999977755    4566665 223   699999988774

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=96.29  E-value=0.0048  Score=41.63  Aligned_cols=45  Identities=18%  Similarity=0.254  Sum_probs=32.1

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEe-Eeeec
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQI-RLSIT   78 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~-v~~~~   78 (98)
                      ++.|.++.|.|.+.+ ...    ..|.+++..|.++          ++|.|.|++ ++.+|
T Consensus        11 ~~~G~~v~L~C~~~~-~~~----i~W~k~g~~l~~~----------~~~~L~I~~~~~~~D   56 (186)
T 1jbj_A           11 SISGTSVELTCPLDS-DEN----LKWEKNGQELPQK----------HDKHLVLQDFSEVED   56 (186)
T ss_dssp             EEETTEEEEECSSCC-CTT----CEEEETTEEECSC----------CCSEEEEESCCTTTS
T ss_pred             EeCCcEEEEEEeCCC-CCc----eEEEECCEECCCC----------CCCEEEECCCCcccc
Confidence            458999999999865 333    7899999776442          345677777 66555

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=96.29  E-value=0.0055  Score=40.78  Aligned_cols=69  Identities=16%  Similarity=0.210  Sum_probs=45.2

Q ss_pred             ceeecCeEEEEccCCCCcc----ceeEEeEEccCCe------eeecC-------cCCCceEEEccC-----ccEEEEeEe
Q psy5692          18 NVILGNTAVLRCQIPSYMS----EYIIVTSWIQDDV------NIYLN-------TDTGGKYVVLSS-----GDLYVQIRL   75 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~----d~V~V~SW~~Dd~------~I~p~-------~~~dgKY~vlps-----GeL~Ir~v~   75 (98)
                      .|..|.+++|.|.+.....    .-.....|.+++.      .++..       ....||+.+..+     +.|.|++++
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~   90 (214)
T 2zg1_A           11 TVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDAR   90 (214)
T ss_dssp             EEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEECSCC
T ss_pred             EEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEEccCC
Confidence            5678999999999753211    1245688998863      23321       234689998763     479999999


Q ss_pred             eecCCcceeeeee
Q psy5692          76 SITGNLSVKKMKV   88 (98)
Q Consensus        76 ~~~~n~~~~~~~~   88 (98)
                      .+|.  ..-.|.+
T Consensus        91 ~~D~--G~Y~C~~  101 (214)
T 2zg1_A           91 MEDT--GSYFFRV  101 (214)
T ss_dssp             GGGC--EEEEEEE
T ss_pred             HhhC--ceEEEEE
Confidence            8775  3444544

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=96.24  E-value=0.0023  Score=41.82  Aligned_cols=66  Identities=14%  Similarity=0.257  Sum_probs=43.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-eeeecCc---CCCceEEEcc----CccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNT---DTGGKYVVLS----SGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-~~I~p~~---~~dgKY~vlp----sGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .|..|.+|+|.|.+.+.-.   ....|.+.+ ..|+...   ..++||.+..    ++.|.|++++..|.  ..-.|.+
T Consensus        49 ~v~~G~~v~L~C~~~~~~~---~~i~W~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~Ds--G~Y~C~~  122 (145)
T 1z9m_A           49 TVVAGGTVVLKCQVKDHED---SSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADE--GEYTCSI  122 (145)
T ss_dssp             EEETTSCEEEEEECSCCTT---CCEEEECTTCCEEEETTEECSCCTTEEEEEECSSEEEEEECSCCGGGC--EEEEEEE
T ss_pred             EEEcCCCEEEEEEEcCCCC---cEEEEECCCCcEEEECCceecccCCEEEecCCCCeEEEEECCCChhhC--EEEEEEE
Confidence            5779999999999865442   245798654 3343211   1357888765    67899999998875  2344443

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=96.23  E-value=0.0036  Score=37.51  Aligned_cols=62  Identities=15%  Similarity=0.163  Sum_probs=40.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEc--cCc--cEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL--SSG--DLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vl--psG--eL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .|..|.++.|.|.+..+-.   ....|.+++..|.+    ++++.+.  ..|  .|.|.+++.+|.  ..-.|..
T Consensus        16 ~v~~G~~v~l~C~~~g~p~---p~v~W~k~g~~~~~----~~~~~~~~~~~~~~~L~i~~v~~~D~--G~Y~C~a   81 (99)
T 1g1c_A           16 TVGQGSDAHFRVRVVGKPD---PECEWYKNGVKIER----SDRIYWYWPEDNVCELVIRDVTGEDS--ASIMVKA   81 (99)
T ss_dssp             EEETTSCEEEEEEEEEESC---CEEEEEETTEECCC----CSSEEEEEEETTEEEEEECSCCGGGC--EEEEEEE
T ss_pred             EEcCCCcEEEEEEEEEeCC---CEEEEEECCEECCC----CCCEEEEEcCCCEEEEEECCCCcCCC--EEEEEEE
Confidence            6778999999999743322   24689999977654    3444443  233  699999988774  3444543

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=96.21  E-value=0.0037  Score=40.80  Aligned_cols=64  Identities=16%  Similarity=0.212  Sum_probs=44.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEcc-CCeeeecCcCCCceEEEc----cCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQ-DDVNIYLNTDTGGKYVVL----SSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~-Dd~~I~p~~~~dgKY~vl----psGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .|..|.++.|.|.+...-.  .....|.+ ++..+.+   .+++|.+.    .++.|.|++++.+|.-  .-.|.+
T Consensus        13 ~v~~G~~v~l~C~~~~~~~--~~~v~W~~~~g~~~~~---~~~~~~~~~~~~~~~~L~i~~~~~~d~G--~Y~C~~   81 (191)
T 1epf_A           13 EISVGESKFFLCQVAGDAK--DKDISWFSPNGEKLSP---NQQRISVVWNDDDSSTLTIYNANIDDAG--IYKCVV   81 (191)
T ss_dssp             EEETTCCEEEEEEECCCSC--CCEEEEECTTSCEECC---BSSSEEEEEEETTEEEEEECSCCGGGCE--EEEEEE
T ss_pred             EEcCCCCEEEEEECCCCCC--CceEEEEeCCCccccC---CCCeEEEEECCCCceEEEEccCCcccCE--EEEEEE
Confidence            5779999999999875431  23467999 5566654   35788775    3588999998877642  344544

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=96.21  E-value=0.0061  Score=39.89  Aligned_cols=69  Identities=17%  Similarity=0.125  Sum_probs=43.6

Q ss_pred             ceeecCeEEEEccCCCCccce-eEEeEEccCC----------------eeeec-CcCCCceEEEcc------CccEEEEe
Q psy5692          18 NVILGNTAVLRCQIPSYMSEY-IIVTSWIQDD----------------VNIYL-NTDTGGKYVVLS------SGDLYVQI   73 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~-V~V~SW~~Dd----------------~~I~p-~~~~dgKY~vlp------sGeL~Ir~   73 (98)
                      .|..|.+++|.|.+...-... .....|.+++                ..+.. .....+|+.+..      ++.|.|++
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~   90 (214)
T 3jz7_A           11 EKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTN   90 (214)
T ss_dssp             EEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCEEECS
T ss_pred             EEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccEEEcc
Confidence            567899999999986543321 2356787732                11111 112367888875      68899999


Q ss_pred             EeeecCCcceeeeee
Q psy5692          74 RLSITGNLSVKKMKV   88 (98)
Q Consensus        74 v~~~~~n~~~~~~~~   88 (98)
                      ++.+|.  ..-.|.+
T Consensus        91 v~~~D~--G~Y~C~~  103 (214)
T 3jz7_A           91 LQLSDI--GTYQCKV  103 (214)
T ss_dssp             CCGGGC--EEEEEEE
T ss_pred             CChhhC--eEEEEEE
Confidence            988774  3444544

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=96.20  E-value=0.0033  Score=39.52  Aligned_cols=65  Identities=17%  Similarity=0.276  Sum_probs=41.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC--e---eeecCcCCCceEEEc-----cCccEEEEeEeeecCCcceeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NIYLNTDTGGKYVVL-----SSGDLYVQIRLSITGNLSVKKMK   87 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd--~---~I~p~~~~dgKY~vl-----psGeL~Ir~v~~~~~n~~~~~~~   87 (98)
                      .|..|.+|.|.|.+...... .....|.++.  .   .+.   ..++||.+.     .+..|.|++++.+|.  +.=-|.
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds--G~Y~C~   84 (108)
T 2coq_A           11 TKETGESLTINCVLRDTACA-LDSTNWYRTKLGSTKEQTI---SIGGRYSETVDEGSNSASLTIRDLRVEDS--GTYKCK   84 (108)
T ss_dssp             EECTTCCEEEEEEECCSSEE-EEEEEEEEEETTCCCEEEC---CCBTTEEEEEETTTTEEEEEECSCCGGGC--EEEEEE
T ss_pred             EEcCCCCEEEEeEeCCCcCC-CCEEEEEEcCCCCCcEEEE---EeCCceEEEEcCCCCEEEEEECCCCcccC--EEEEEE
Confidence            45589999999998644312 2456899874  1   121   136799763     245699999998764  344444


Q ss_pred             e
Q psy5692          88 V   88 (98)
Q Consensus        88 ~   88 (98)
                      +
T Consensus        85 ~   85 (108)
T 2coq_A           85 A   85 (108)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=96.19  E-value=0.0035  Score=42.43  Aligned_cols=58  Identities=9%  Similarity=0.017  Sum_probs=41.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecC--------cCCCceEEEc-cCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN--------TDTGGKYVVL-SSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~--------~~~dgKY~vl-psGeL~Ir~v~~~~~   79 (98)
                      .++.|.+++|.|.+..   . .....|.+++..|...        ....+|+.+. ++|.|.|++++.+|.
T Consensus         6 ~~~~G~~VtL~c~~~~---~-~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~Ds   72 (171)
T 1ccz_A            6 YGVVYGNVTFHVPSNV---P-LKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDE   72 (171)
T ss_dssp             EEETTCCEEECCCCSS---C-CSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGC
T ss_pred             EEEcCCCEEEcCCCCC---C-cceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhC
Confidence            6789999999999732   2 4567899988444311        1134677775 789999999998764

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=96.16  E-value=0.0013  Score=41.83  Aligned_cols=70  Identities=20%  Similarity=0.210  Sum_probs=43.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-e----eeecC---------------------cCCCceEEEcc--CccE
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-V----NIYLN---------------------TDTGGKYVVLS--SGDL   69 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-~----~I~p~---------------------~~~dgKY~vlp--sGeL   69 (98)
                      .|..|.+++|.|.+..-...-.....|.+++ .    .|+..                     .+..+|+.+..  ++.|
T Consensus        15 ~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~sL   94 (135)
T 1xt5_A           15 EVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTL   94 (135)
T ss_dssp             EEETTSCEEECCEEEEETCCSCCEEEEEEESSSSSEEEEEEEEECCCCTTCCCCTTSEEEEECGGGTTTEEESCTTSCCE
T ss_pred             EEeCCCCEEEeeEeecCCCCCccEEEEEeeCCCCCceEEEEeccccccccccccccccccccChhhcCcEEEecCCCCeE
Confidence            4568999999998732111122357898875 2    12210                     11237888764  5789


Q ss_pred             EEEeEeeecCCcceeeeeeh
Q psy5692          70 YVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        70 ~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .|++++.+|.  ..=.|.+.
T Consensus        95 ~I~~v~~~D~--G~Y~C~v~  112 (135)
T 1xt5_A           95 RLTHVHPQDG--GRYWCQVA  112 (135)
T ss_dssp             EECSCCGGGC--EEEEEEEE
T ss_pred             EECCCChhhC--cEEEEEEE
Confidence            9999998874  45556554

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=96.16  E-value=0.0049  Score=40.58  Aligned_cols=65  Identities=14%  Similarity=0.235  Sum_probs=45.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEcc--CCeeeecCcCCCceEEEccCc---cEEEEeEe-eecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQ--DDVNIYLNTDTGGKYVVLSSG---DLYVQIRL-SITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~--Dd~~I~p~~~~dgKY~vlpsG---eL~Ir~v~-~~~~n~~~~~~~~   88 (98)
                      .+..|.++.|.|.+..+-..   ..+|.+  ++..+ +....+++|.+..++   .|.|.+++ .+|.  ..-.|.+
T Consensus       103 ~~~~g~~v~l~C~~~g~p~p---~i~W~~~~~g~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~--G~Y~C~a  173 (190)
T 2wv3_A          103 NKNEGQDAMMYCKSVGYPHP---EWMWRKKENGVFE-EISNSSGRFFIINKENYTELNIVNLQITEDP--GEYECNA  173 (190)
T ss_dssp             EEETTSCEEEEEEEECSSCC---EEEEEEEETTEEE-ECCCTTSCEEEEECSSEEEEEECSCCTTTSC--EEEEEEE
T ss_pred             eeeCCCcEEEEEEeCccCCC---ceEEEEcCCCcee-eeecCCCeEEEecCCCeeEEEEEeccccCCC--EEEEEEE
Confidence            67799999999998544332   558999  44444 333467899998765   59999998 5664  2355554

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=96.15  E-value=0.0016  Score=44.12  Aligned_cols=70  Identities=20%  Similarity=0.190  Sum_probs=45.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCee-----eec---------------------CcCCCceEEEcc--CccE
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVN-----IYL---------------------NTDTGGKYVVLS--SGDL   69 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~-----I~p---------------------~~~~dgKY~vlp--sGeL   69 (98)
                      .|..|.+++|.|.+......-.....|.+++..     ++.                     ..+..||+.+..  ++.|
T Consensus        13 ~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~L   92 (250)
T 2fbo_J           13 EVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTL   92 (250)
T ss_dssp             EECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCTTSCCE
T ss_pred             EEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccCCcceE
Confidence            466899999999875322122445789988722     222                     023467887776  5789


Q ss_pred             EEEeEeeecCCcceeeeeeh
Q psy5692          70 YVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        70 ~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .|++++.+|.  ..-.|.+.
T Consensus        93 ~I~~v~~~D~--G~Y~C~~~  110 (250)
T 2fbo_J           93 RLTHVHPQDG--GRYWCQVA  110 (250)
T ss_dssp             EECSCCGGGC--EEEEEEEE
T ss_pred             EEeeCChhhC--eEEEEEec
Confidence            9999998875  44455543

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=96.11  E-value=0.004  Score=41.78  Aligned_cols=66  Identities=15%  Similarity=0.254  Sum_probs=43.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC------eeeec----CcCCCceEEEccCc---cEEEEeEeeecCCccee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIYL----NTDTGGKYVVLSSG---DLYVQIRLSITGNLSVK   84 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd------~~I~p----~~~~dgKY~vlpsG---eL~Ir~v~~~~~n~~~~   84 (98)
                      .|..|.+++|.|.+...-..   ...|++++      ..++.    .....+||.+..+|   .|.|++++.+|.  ..-
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~---~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~--G~Y   85 (210)
T 1lk3_L           11 TVSPGEKLTISCKASESVTS---RMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDT--AIY   85 (210)
T ss_dssp             EECTTSCEEEEEEESSCCTT---CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC--EEE
T ss_pred             EEcCCCCEEEEeeCCCccCC---CEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHC--eEE
Confidence            45689999999998654433   37898742      11221    11235899987654   899999998875  344


Q ss_pred             eeee
Q psy5692          85 KMKV   88 (98)
Q Consensus        85 ~~~~   88 (98)
                      .|.+
T Consensus        86 ~C~~   89 (210)
T 1lk3_L           86 FCQQ   89 (210)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4444

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=96.10  E-value=0.0058  Score=42.72  Aligned_cols=56  Identities=14%  Similarity=0.119  Sum_probs=42.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEc-cCCeeeecCcCCCceEEEccCccEEEEeEeeecCC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWI-QDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGN   80 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~-~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n   80 (98)
                      .+..|.++.|.|.+..  .. ....+|. .++..|.    .+.+|.+.++|.|.|.+++..|.-
T Consensus       102 ~~~~g~~v~l~C~~~~--p~-~~~v~W~~~~g~~l~----~~~~~~~~~~~~L~i~~v~~~d~G  158 (290)
T 2o26_X          102 FGKEDSDALVRCPLTD--PQ-VSQYSLIECDGKSLP----TDLTFVPNPKAGITIKNVKRAYHR  158 (290)
T ss_dssp             EEETTSCEEECCCBSC--CS-CEEEEEEETTSCCCC----TTCEEEEETTTEEEEESCCGGGTT
T ss_pred             EEecCCeEEEeCcCCC--CC-CceEEEEeCCCcCCC----CCCceeeCCCCCEEEecccHHHCC
Confidence            5668999999999863  12 3667894 5556553    368999999999999999888754

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=96.09  E-value=0.0043  Score=40.87  Aligned_cols=62  Identities=18%  Similarity=0.249  Sum_probs=42.1

Q ss_pred             ceeecCeEEEEccC-CCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQI-PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~I-Ps~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+..|.++.|.|.+ ..+-..   ...|.+++..|..   .+.+ ....+|.|.|.+++.+|.  ..-.|.+
T Consensus       122 ~~~~g~~~~l~C~~~~~~p~~---~v~W~~~~~~l~~---~~~~-~~~~~~~L~i~~~~~~d~--G~Y~C~a  184 (212)
T 2v9r_A          122 MVAVGEPAVMECQPPRGHPEP---TISWKKDGSPLDD---KDER-ITIRGGKLMITYTRKSDA--GKYVCVG  184 (212)
T ss_dssp             EEETTSCEEEECBCCCEESCC---EEEEEETTEEECT---TSTT-EEEETTEEEESSCCGGGC--EEEEEEE
T ss_pred             EecCCCcEEEEEecCCCCCCC---EEEEEECCccCCC---Ccce-EEccCCeEEEeeCCHhhC--eeEEEEE
Confidence            56789999999997 322222   4789999977744   2334 445688999999887765  3444544

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=96.06  E-value=0.0036  Score=47.88  Aligned_cols=64  Identities=8%  Similarity=0.048  Sum_probs=47.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEcc-CCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQ-DDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~-Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .+..|.++.|.|.++..-   ....+|++ |+..|.    .+++|.+.++|.|.|.+++..|.- ..-.|.+.
T Consensus       125 ~v~~G~~v~l~C~~~~~~---~~~v~W~~~~g~~l~----~~~~~~~~~~~~L~i~~~~~~d~G-~~Y~C~a~  189 (524)
T 2ec8_A          125 YGKEDNDTLVRCPLTDPE---VTNYSLKGCQGKPLP----KDLRFIPDPKAGIMIKSVKRAYHR-LCLHCSVD  189 (524)
T ss_dssp             CEETTSCEEECCCBSCCC---CSCEEEECSSSCCCC----SSCEEEEETTTEEEEESCCGGGTT-CEEEEEEC
T ss_pred             EEEcCCeEEEECcCCCCc---cceEEEEccCCcCcC----CCCceeECCCccEEEeccchhhCC-ceEEEEEE
Confidence            678899999999986422   35668988 555553    367999999999999999987764 13455543

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=96.05  E-value=0.0033  Score=42.03  Aligned_cols=66  Identities=17%  Similarity=0.194  Sum_probs=42.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC--e---e-eec----CcCCCceEEEccCc---cEEEEeEeeecCCccee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---N-IYL----NTDTGGKYVVLSSG---DLYVQIRLSITGNLSVK   84 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd--~---~-I~p----~~~~dgKY~vlpsG---eL~Ir~v~~~~~n~~~~   84 (98)
                      .|..|.++.|.|.+...-..   ..+|.++.  .   . ++.    .....+||.+..+|   .|.|++++.+|.  ..-
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~---~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~--G~Y   86 (213)
T 3d9a_L           12 SVTPGNSVSLSCRASQSIGN---NLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF--GMY   86 (213)
T ss_dssp             EECTTCCEEEEEEESSCCTT---CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC--EEE
T ss_pred             EEeCCCcEEEEEECCCCCCC---CEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhC--EEE
Confidence            45689999999998655433   37898743  1   1 111    11234799988654   799999998875  344


Q ss_pred             eeee
Q psy5692          85 KMKV   88 (98)
Q Consensus        85 ~~~~   88 (98)
                      .|.+
T Consensus        87 ~C~~   90 (213)
T 3d9a_L           87 FCQQ   90 (213)
T ss_dssp             EEEE
T ss_pred             EEee
Confidence            4544

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=96.04  E-value=0.0096  Score=41.94  Aligned_cols=67  Identities=15%  Similarity=0.183  Sum_probs=42.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC----eee--e-c------CcCCCceEEEc----cCccEEEEeEeeecCC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD----VNI--Y-L------NTDTGGKYVVL----SSGDLYVQIRLSITGN   80 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd----~~I--~-p------~~~~dgKY~vl----psGeL~Ir~v~~~~~n   80 (98)
                      .|+.|.+|+|.|.++..  +-....+|.+++    ..+  + +      .....+|..+.    .++.|.|++++.+|. 
T Consensus        10 tv~~G~~v~L~C~v~~~--~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~-   86 (308)
T 4fom_A           10 TAVWGKNVSLKCLIEVN--ETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDS-   86 (308)
T ss_dssp             EEETTSCEEECCBCCCS--SCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGC-
T ss_pred             EEEcCCcEEEEEEecCC--CCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHC-
Confidence            46789999999998532  334557898764    111  1 1      12245676663    346799999998874 


Q ss_pred             cceeeeee
Q psy5692          81 LSVKKMKV   88 (98)
Q Consensus        81 ~~~~~~~~   88 (98)
                       ..-.|.+
T Consensus        87 -G~Y~C~a   93 (308)
T 4fom_A           87 -GKYICKA   93 (308)
T ss_dssp             -EEEEEEE
T ss_pred             -EEEEEEE
Confidence             3444544

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=96.03  E-value=0.006  Score=44.24  Aligned_cols=65  Identities=18%  Similarity=0.329  Sum_probs=47.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+..|.++.|.|.+..+-.   ....|.+++..+.+ ...+.++.+.++|.|.|.+++.+|.  ..-.|.+
T Consensus       132 ~~~~G~~v~l~C~~~~~p~---~~v~W~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~d~--G~Y~C~~  196 (403)
T 3laf_A          132 TAFMGDTVLLKCEVIGDPM---PTIHWQKNQQDLNP-IPGDSRVVVLPSGALQISRLQPGDS--GVYRCSA  196 (403)
T ss_dssp             EEETTSCEEECCCEECSSC---CEEEEEESSSBCCC-CTTCCSEEECTTSCEEECSCCGGGC--EEEEEEE
T ss_pred             EEEcCCeEEEEEEEcccCC---CeEEEEECCEeccc-cCCceEEEEcCCceEEEcccccccC--EEEEEEE
Confidence            5678999999999854322   26789999866643 3356788999999999999988774  3445544

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=96.03  E-value=0.0046  Score=41.67  Aligned_cols=66  Identities=17%  Similarity=0.211  Sum_probs=44.0

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccC---ccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS---GDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlps---GeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .+..|.++.|.|.+..+-.-   ..+|.+++..|.+ ....+++.++.+   +.|.|.+++.+|.  ..-.|.+.
T Consensus       119 ~~~~g~~v~l~C~~~g~p~p---~v~W~~~g~~l~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~--G~Y~C~a~  187 (212)
T 2yd6_A          119 VVERTRTATMLCAASGNPDP---EITWFKDFLPVDT-SNNNGRIKQLRSESIGALQIEQSEESDQ--GKYECVAT  187 (212)
T ss_dssp             EEETTSCEEEEEEEECSSCC---EEEEEETTEEC-------CCEEEEEETTEEEEEECSCCGGGC--EEEEEEEE
T ss_pred             eEecCCCEEEEEEecCCCCC---eEEEEECCccccC-cCCCceEEEEecCCeEEEEEcCCCcccC--EEEEEEEE
Confidence            56679999999998644322   3789999977644 223578877764   8899999887764  34555543

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=96.03  E-value=0.008  Score=39.68  Aligned_cols=53  Identities=11%  Similarity=0.116  Sum_probs=41.1

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccC-ccEEEEeEeeecC
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS-GDLYVQIRLSITG   79 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlps-GeL~Ir~v~~~~~   79 (98)
                      +..|.++.|.|.+...-    ...+|.+++..+.+    ++++.+.++ +.|.|++++.+|.
T Consensus       122 ~~~g~~v~l~C~~~~~p----p~i~W~~~g~~l~~----~~~~~~~~~~~~L~i~~v~~~d~  175 (208)
T 3r4d_A          122 VKELDSVTLTCLSNDIG----ANIQWLFNSQSLQL----TERMTLSQNNSILRIDPIKREDA  175 (208)
T ss_dssp             CCTTCCEEEEEECSCTT----CEEEEEETTEECCC----CSSEEEETTTTEEEESSCCGGGC
T ss_pred             EeeCCCEEEEEECCCCC----CceEEEECCEeCCC----CCCeEEcCCCCEEEEeccCHHhC
Confidence            67899999999986532    26789999876643    568887764 8899999888773

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=96.02  E-value=0.0067  Score=37.73  Aligned_cols=71  Identities=13%  Similarity=0.120  Sum_probs=44.1

Q ss_pred             ceeecCeEEEEccCCCC-ccceeEEeEEccCCe------eee-c---------CcCCCceEEEcc-----CccEEEEeEe
Q psy5692          18 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDDV------NIY-L---------NTDTGGKYVVLS-----SGDLYVQIRL   75 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~-V~d~V~V~SW~~Dd~------~I~-p---------~~~~dgKY~vlp-----sGeL~Ir~v~   75 (98)
                      .|..|.+|+|.|.+.+. -..-.....|.+.+.      .++ .         .....||+.+..     ++.|.|++++
T Consensus        10 ~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   89 (124)
T 1neu_A           10 YGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNLD   89 (124)
T ss_dssp             EEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEECSCC
T ss_pred             EEEeCCeEEEEeEEeCCCCCCCceEEEEEEcCCCCCceEEEEEecCCeeccccCccccCcEEEecCCcCCeEEEEEccCC
Confidence            46689999999997432 111233467877541      122 1         122367888763     4789999999


Q ss_pred             eecCCcceeeeeehH
Q psy5692          76 SITGNLSVKKMKVEE   90 (98)
Q Consensus        76 ~~~~n~~~~~~~~~~   90 (98)
                      .+|.  ..-.|.+..
T Consensus        90 ~~D~--G~Y~C~v~~  102 (124)
T 1neu_A           90 YSDN--GTFTCDVKN  102 (124)
T ss_dssp             GGGC--EEEEEEEEC
T ss_pred             hhhC--EEEEEEEEc
Confidence            8874  445565543

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.02  E-value=0.0019  Score=39.04  Aligned_cols=62  Identities=18%  Similarity=0.214  Sum_probs=41.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+..|.++.|.|.+..+-.-   ...|.+++..|.+    +..+.....+.|.|++++.+|.  ..-.|..
T Consensus        22 ~v~~G~~v~l~C~~~g~p~p---~v~W~~~g~~~~~----~~~~~~~~~~~L~i~~v~~~D~--G~Y~C~a   83 (99)
T 2yr3_A           22 AVIEGQDFVLQCSVRGTPVP---RITWLLNGQPIQY----ARSTCEAGVAELHIQDALPEDH--GTYTCLA   83 (99)
T ss_dssp             EECTTCCEEEECEEEEESCC---CCEEEESSSBCSS----CCCEEETTEEEEEECSCCTTCC--BCEEEEE
T ss_pred             EEeCCCeEEEEEEEeeeCCC---eEEEEECCEECcc----cceEeeCCeEEEEECCCChhhC--EEEEEEE
Confidence            67899999999997433222   4689999866533    2344444567899999888773  3445543

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=96.01  E-value=0.011  Score=36.72  Aligned_cols=54  Identities=20%  Similarity=0.356  Sum_probs=37.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcC-CCceEEEccCccEEEEeE
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTD-TGGKYVVLSSGDLYVQIR   74 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~-~dgKY~vlpsGeL~Ir~v   74 (98)
                      .+..|.++.|.|.+..+-.-   ...|.+++..+.+..+ ...++...++|.|++..+
T Consensus        20 ~v~~G~~v~L~C~~~g~P~p---~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   74 (117)
T 2v9t_A           20 IVSKGEPATLNCKAEGRPTP---TIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRI   74 (117)
T ss_dssp             EECTTCCEEECCEEEEESCC---EEEEEETTEECCCTTTCSSCSEEECTTSCEEESSC
T ss_pred             EEcCCCcEEEEEECCccCCC---eEEEEECCEeccccCCCCcceeEEecCCcEEEEEE
Confidence            57799999999997433222   3789999976654322 234677788999888765

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=96.01  E-value=0.0036  Score=41.13  Aligned_cols=66  Identities=15%  Similarity=0.124  Sum_probs=42.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCe-eeec---------CcCCCceEEEc----cCcc--EEEEeEeeecCCc
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDV-NIYL---------NTDTGGKYVVL----SSGD--LYVQIRLSITGNL   81 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~-~I~p---------~~~~dgKY~vl----psGe--L~Ir~v~~~~~n~   81 (98)
                      .|..|.++.|.|.+...-   .....|.+++. .+..         .....+|+...    ++|.  |.|++++.+|.  
T Consensus         6 ~~~~G~~v~L~C~~~~~~---~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~--   80 (184)
T 2ny1_B            6 LGKKGDTVELTCTASQKK---SIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDS--   80 (184)
T ss_dssp             EEETTSCEEECCBCSSSS---CCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGC--
T ss_pred             EEeCCCCEEEEEEEcCCC---ceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHC--
Confidence            467899999999976322   23567999873 2221         12235677765    4455  99999988775  


Q ss_pred             ceeeeee
Q psy5692          82 SVKKMKV   88 (98)
Q Consensus        82 ~~~~~~~   88 (98)
                      ..-.|.+
T Consensus        81 G~Y~C~~   87 (184)
T 2ny1_B           81 DTYICEV   87 (184)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            2344443

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=96.01  E-value=0.004  Score=42.35  Aligned_cols=68  Identities=15%  Similarity=0.262  Sum_probs=39.7

Q ss_pred             ceeecCeEEEEccCCC-CccceeEEeEEccCC--eee--ecC---------cCCCceEEEcc------CccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPS-YMSEYIIVTSWIQDD--VNI--YLN---------TDTGGKYVVLS------SGDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs-~V~d~V~V~SW~~Dd--~~I--~p~---------~~~dgKY~vlp------sGeL~Ir~v~~~   77 (98)
                      .|..|.+|+|.|.+.+ .-.+.. ...|.+++  ..+  |..         ....+|...+.      ++.|.|++++.+
T Consensus        15 ~v~~G~~v~L~C~v~~~~~~~~~-~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~   93 (226)
T 4f80_A           15 LAMVGEDADLPCHLFPTMSAETM-ELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTAS   93 (226)
T ss_dssp             EEETTSCEEEEEEEESCCCCTTS-EEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCCGG
T ss_pred             EEEcCCcEEEEEEEECCCCCCce-EEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCchH
Confidence            3578999999998732 222222 35798876  211  210         11234555443      357999999888


Q ss_pred             cCCcceeeeee
Q psy5692          78 TGNLSVKKMKV   88 (98)
Q Consensus        78 ~~n~~~~~~~~   88 (98)
                      |.  ..-.|.+
T Consensus        94 D~--G~Y~C~a  102 (226)
T 4f80_A           94 DS--GKYLCYF  102 (226)
T ss_dssp             GC--EEEEEEE
T ss_pred             HC--eeEEEEE
Confidence            75  3444544

>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*

Probab=96.01  E-value=0.0085  Score=38.49  Aligned_cols=70  Identities=14%  Similarity=0.206  Sum_probs=44.5

Q ss_pred             ceeecCeEEEEccCCCCc----cceeEEeEEccCCe------eeecCc-------CCCceEEEccC-----ccEEEEeEe
Q psy5692          18 NVILGNTAVLRCQIPSYM----SEYIIVTSWIQDDV------NIYLNT-------DTGGKYVVLSS-----GDLYVQIRL   75 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V----~d~V~V~SW~~Dd~------~I~p~~-------~~dgKY~vlps-----GeL~Ir~v~   75 (98)
                      .|..|.+|+|.|.+.+..    ..-.....|.+...      .|+...       ...|||.+..+     ..|.|++++
T Consensus        17 ~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   96 (132)
T 1nko_A           17 TVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIRDAR   96 (132)
T ss_dssp             EEETTCCEEECEEEECCCCTTTTTSCCEEEEEEC-----CCSCSEESCTTCCCCGGGTTTEEECSCGGGTBCCEEECSCC
T ss_pred             EEcCCCeEEEEccccCCCccccCCCccEEEEEECCCCCCcccEEEeCCCccccccccCccEEEeCCCCCCceEEEEcccC
Confidence            567899999999975221    11124578998762      344321       23589998642     379999999


Q ss_pred             eecCCcceeeeeeh
Q psy5692          76 SITGNLSVKKMKVE   89 (98)
Q Consensus        76 ~~~~n~~~~~~~~~   89 (98)
                      .+|.  +.=-|.+.
T Consensus        97 ~~Ds--G~Y~C~v~  108 (132)
T 1nko_A           97 MSDA--GRYFFRME  108 (132)
T ss_dssp             GGGC--EEEEEEEE
T ss_pred             cccC--eeEEEEEE
Confidence            8875  45555554

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=96.00  E-value=0.0046  Score=42.82  Aligned_cols=66  Identities=15%  Similarity=0.183  Sum_probs=46.0

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCc-cEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG-DLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG-eL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+..|.++.|.|.+..+-.   ...+|.+++..|.+......+|.+..+| .|.|.+++.+|.-  .-.|.+
T Consensus       207 ~~~~g~~v~l~C~~~g~p~---p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G--~Y~C~a  273 (291)
T 1qz1_A          207 TANLGQSVTLVCDADGFPE---PTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEA--EYVCIA  273 (291)
T ss_dssp             ETTSCCCEEEEEEEEEESC---CEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCE--EEEEEE
T ss_pred             ccccCceEEEEEEEEEeCC---CcEEEEECCEECcCCCCCCcceEEcCCCcEEEEEecChhcCE--EEEEEE
Confidence            5678999999999753322   2488999998776644445688887654 6999999887743  445554

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=95.92  E-value=0.0055  Score=41.14  Aligned_cols=55  Identities=16%  Similarity=0.358  Sum_probs=38.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      .+..|.++.|.|.+.++-..   ..+|.+++..+.+   .+.+|. ..+|.|.|.+++.+|.
T Consensus       121 ~~~~g~~v~l~C~~~g~p~p---~i~W~~~~~~~~~---~~~~~~-~~~~~L~i~~v~~~d~  175 (212)
T 2yd1_A          121 VIEVGHTVLMTCKAIGNPTP---NIYWIKNQTKVDM---SNPRYS-LKDGFLQIENSREEDQ  175 (212)
T ss_dssp             EEETTCCEEECCEEECSSCC---EEEEEETTEECCT---TSTTEE-EETTEEEECSCCGGGC
T ss_pred             EeecCCeEEEEEEeccCCCC---eEEEEECCeEccc---CCCeEE-ccCCeEEEccCChhhC
Confidence            45679999999998554332   3789999977654   345664 4577888888776654

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=95.90  E-value=0.0064  Score=42.92  Aligned_cols=58  Identities=19%  Similarity=0.245  Sum_probs=43.7

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      .+..|.++.|.|.+...-.   ...+|.+++..+.++ ...+++....+|.|.|.+++..|.
T Consensus       119 ~v~~g~~v~l~C~~~g~p~---~~v~W~k~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~d~  176 (304)
T 2yd9_A          119 VVERTRTATMLCAASGNPD---PEITWFKDFLPVDPS-ASNGRIKQLRSGALQIESSEETDQ  176 (304)
T ss_dssp             EEETTSCEEECCEEECSSC---CEEEEEETTEECCGG-GGTTSEEECTTSCEEECSCCGGGC
T ss_pred             EEeCCCeEEEEEECccCCC---CeEEEEECCEECcCC-CCcceEEeCCCeEEEEccCCcccC
Confidence            4668999999999754432   257899999776542 234588888999999999887764

>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate binding, immune system; HET: SIA GAL GLC; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A* 1qfp_A 2bve_A* 1url_A*

Probab=95.87  E-value=0.013  Score=36.83  Aligned_cols=70  Identities=11%  Similarity=0.158  Sum_probs=44.0

Q ss_pred             ceeecCeEEEEccCCCCcc---ceeEEeEEccCCe----eeecC-------cCCCceEEEcc-----CccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMS---EYIIVTSWIQDDV----NIYLN-------TDTGGKYVVLS-----SGDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~---d~V~V~SW~~Dd~----~I~p~-------~~~dgKY~vlp-----sGeL~Ir~v~~~~   78 (98)
                      .|..|.+|+|.|.+.....   .-.....|.+...    .|+-.       ....||+.+..     +..|.|++++.+|
T Consensus        11 ~~~~G~~v~L~C~~~~~~~~~~~~~~~v~W~~~~~g~~~~v~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D   90 (119)
T 1qfo_A           11 QGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLKPED   90 (119)
T ss_dssp             EEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSCCGGG
T ss_pred             EEecCCcEEEEEEeeCCCccCCCCCeEEEEEEcCCCCCCEEEECCCCcccCccceeeEEEeCCCCCCEEEEEEccCCccc
Confidence            5679999999999742211   1123468988751    33321       12358998863     2469999999987


Q ss_pred             CCcceeeeeeh
Q psy5692          79 GNLSVKKMKVE   89 (98)
Q Consensus        79 ~n~~~~~~~~~   89 (98)
                      .  +.=.|.+.
T Consensus        91 s--g~Y~C~v~   99 (119)
T 1qfo_A           91 S--GTYNFRFE   99 (119)
T ss_dssp             C--EEEEEEEE
T ss_pred             C--ceEEEEEE
Confidence            5  45556554

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=95.86  E-value=0.0051  Score=41.20  Aligned_cols=53  Identities=8%  Similarity=0.078  Sum_probs=37.7

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      .|..|.+++|.|....-   .. ...|.+|+..+.+     .+.....+|.|.|.+++.+|.
T Consensus       109 ~v~~G~~v~L~C~~~~~---~~-~~~w~k~g~~~~~-----~~~~~~~~~~L~I~~v~~~d~  161 (188)
T 1oll_A          109 EVISGEKVTFYCRLDTA---TS-MFLLLKEGRSSHV-----QRGYGKVQAEFPLGPVTTAHR  161 (188)
T ss_dssp             EEETTCEEEEEEECSSS---CS-EEEEEEESSSCEE-----EEEECSSEEEEEEEECCGGGC
T ss_pred             ccccCCEEEEEEEcCCC---CC-EEEEEECCccccc-----cccCCCceeEEEECCCCcCCC
Confidence            57899999999997532   22 4689999855433     123335678999999988775

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=95.86  E-value=0.0085  Score=39.07  Aligned_cols=66  Identities=17%  Similarity=0.251  Sum_probs=44.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEcc---CCeeeecCcCCCceEEEccCc---cEEEEeEe-eecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQ---DDVNIYLNTDTGGKYVVLSSG---DLYVQIRL-SITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~---Dd~~I~p~~~~dgKY~vlpsG---eL~Ir~v~-~~~~n~~~~~~~~   88 (98)
                      .+..|.++.|.|.+..+-.  .....|.+   ++..+.+ ...++||.+.++|   .|.|++++ ..|.-  .-.|..
T Consensus        94 ~~~~g~~~~l~C~~~g~p~--~~~i~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G--~Y~C~a  166 (184)
T 3b5h_A           94 HINEGETAMLVCKSESVPP--VTDWAWYKITDSEDKALM-NGSESRFFVSSSQGRSELHIENLNMEADPG--QYRCNG  166 (184)
T ss_dssp             EECTTSCEEEEEECCCSSC--CCEEEEEECCSSSCEECC-TTGGGTEEEEEETTEEEEEECSCCTTTSSE--EEEEEE
T ss_pred             EEcCCCcEEEEEEECCCCC--CCeEEEEEcCCCCCEEee-cCCCCEEEEEecCCeeEEEEeeccccccCc--eEEEEE
Confidence            5778999999999865431  23458999   4433222 1235899998877   79999998 66643  445544

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=95.85  E-value=0.006  Score=42.63  Aligned_cols=62  Identities=11%  Similarity=0.154  Sum_probs=45.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccC-c---cEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS-G---DLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlps-G---eL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+..|.++.|.|.+..+-..   ...|.+++..|.+    +++|.+..+ |   .|.|++++.+|.  -.-.|.+
T Consensus       233 ~v~~g~~~~l~C~~~g~p~p---~i~W~~~g~~~~~----~~~~~~~~~~~~~~~L~i~~v~~~d~--G~Y~C~a  298 (317)
T 2y25_A          233 TIQEGKALNLTCNVWGDPPP---EVSWLKNEKALAS----DDHCNLKFEAGRTAYFTINGVSTADS--GKYGLVV  298 (317)
T ss_dssp             EEETTSBBCEEEEEECSSCC---EEEEEESSSEECC----CSSEEECCBTTTEEEEEEBSCCSTTC--EEEEEEE
T ss_pred             EEEcCCEEEEEEEEecCCCC---EEEEEECCEeCCC----CCcEEEEEcCCCEEEEEECCCCHHHC--EEEEEEE
Confidence            56789999999997543322   3789999977644    578888765 7   899999987764  3355554

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=95.85  E-value=0.012  Score=40.32  Aligned_cols=65  Identities=12%  Similarity=0.088  Sum_probs=39.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccC--------------CeeeecCcCCCceEEEccCc----cEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQD--------------DVNIYLNTDTGGKYVVLSSG----DLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~D--------------d~~I~p~~~~dgKY~vlpsG----eL~Ir~v~~~~~   79 (98)
                      .|..|.+|+|.|.. +.-   .....|++.              ...+....-.++||.+...+    .|.|++++.+|.
T Consensus        13 ~v~~G~~v~L~C~~-~~~---~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~   88 (245)
T 4ei6_B           13 IIDMGQMVTLNCDP-VSN---HLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALEDS   88 (245)
T ss_dssp             EEETTCCEEEEEEC-CTT---CCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSCCGGGC
T ss_pred             EecCCCCEEEEEEc-CCC---CCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCCCHhHC
Confidence            45689999999943 322   235689872              11111111012899987643    799999998875


Q ss_pred             Ccceeeeee
Q psy5692          80 NLSVKKMKV   88 (98)
Q Consensus        80 n~~~~~~~~   88 (98)
                        ..-.|.+
T Consensus        89 --G~Y~C~~   95 (245)
T 4ei6_B           89 --AVYFCAS   95 (245)
T ss_dssp             --EEEEEEE
T ss_pred             --EEEEEEE
Confidence              3444444

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=95.84  E-value=0.0047  Score=43.05  Aligned_cols=63  Identities=14%  Similarity=0.221  Sum_probs=42.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccC-ccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS-GDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlps-GeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+..|.++.|.|.+...-..  ...+|.+++..|.+    +++|.+... +.|.|++++.+|.  ..-.|.+
T Consensus       232 ~v~~G~~~~l~C~~~~~p~~--~~v~W~~~g~~~~~----~~~~~~~~~~~~L~I~~v~~~d~--G~Y~C~a  295 (312)
T 2y23_A          232 EVTGECNVLLKCKVANIKKE--THIVWYKDEREISV----DEKHDFKDGICTLLITEFSKKDA--GIYEVIL  295 (312)
T ss_dssp             EEETTTEEEEEEEEESCCSS--CEEEEEETTEEEEE----ECCC----CEEEEEECSCSGGGC--EEEEEEE
T ss_pred             EEeCCCEEEEEEEEcCCCCC--CEEEEeeCCEECCC----CCcEEEECCEEEEEECcCCHHHC--EEEEEEE
Confidence            67799999999998644322  13689999977765    466766643 6899999988774  3455554

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=95.83  E-value=0.0067  Score=41.86  Aligned_cols=53  Identities=25%  Similarity=0.223  Sum_probs=37.3

Q ss_pred             eecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeE-eeecC
Q psy5692          20 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIR-LSITG   79 (98)
Q Consensus        20 irGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v-~~~~~   79 (98)
                      +.|.++.|.|.-.+ ..    ...|.+++..|..  ..+++.+..++|.|.|.++ +..|.
T Consensus       126 ~~G~~v~L~C~g~p-~p----~i~W~k~~~~l~~--~~~~~~~~~~~~~L~I~~v~~~~D~  179 (204)
T 1sy6_A          126 ISGTTVILTCPQYP-GS----EILWQHNDKNIGG--DEDDKNIGSDEDHLSLKEFSELEQS  179 (204)
T ss_dssp             EETTEEEEECSCCC-SS----CEEEEETTEEESC--CTTCTTEEEETTEEEETTCCHHHHC
T ss_pred             ecCCcEEEEcCCCC-CC----ceEEEECCEECCC--ccCCceEecCCCEEEEeeCCccccC
Confidence            48999999998321 11    2589999976632  1245556667999999999 77663

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=95.82  E-value=0.0059  Score=42.49  Aligned_cols=61  Identities=18%  Similarity=0.184  Sum_probs=39.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eeeec----------CcCCCceEEEccCcc-----EEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYL----------NTDTGGKYVVLSSGD-----LYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I~p----------~~~~dgKY~vlpsGe-----L~Ir~v~~~   77 (98)
                      .|..|.+++|.|.++.+-... ....|.+..     ..+..          .....+||.+..++.     |.|++++.+
T Consensus        12 ~v~~G~~v~L~C~~~g~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~   90 (253)
T 3uzq_A           12 LVKPGASVRLSCTASGFNIKD-TYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSSLTSG   90 (253)
T ss_dssp             EECTTCCEEEEEEECSSCGGG-SCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eecCCCcEEEEEEeeCCcccC-ceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCCCCcc
Confidence            566899999999976542111 245787721     11110          112358999886554     999999988


Q ss_pred             cC
Q psy5692          78 TG   79 (98)
Q Consensus        78 ~~   79 (98)
                      |.
T Consensus        91 Ds   92 (253)
T 3uzq_A           91 DT   92 (253)
T ss_dssp             GC
T ss_pred             cC
Confidence            74

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}

Probab=95.79  E-value=0.0038  Score=39.25  Aligned_cols=69  Identities=17%  Similarity=0.272  Sum_probs=44.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC--------eeeecCc-----CCCceEEEcc-----CccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--------VNIYLNT-----DTGGKYVVLS-----SGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd--------~~I~p~~-----~~dgKY~vlp-----sGeL~Ir~v~~~~~   79 (98)
                      .+..|.+|+|.|.+.+...+ .....|.+..        ..||...     ...|||.+..     +..|.|++++.+|.
T Consensus         8 ~~~~G~~v~L~C~~~~~~~~-~~~v~W~~~~~~~~~~~~~~i~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~Ds   86 (115)
T 2or7_A            8 QGLAGHPVTLPCIYSTHLGG-IVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNVSLTIENTVVGDG   86 (115)
T ss_dssp             EEETTSCEEECCBCCHHHHC-SCCEEEEESCHHHHTTTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCGGGC
T ss_pred             EEEcCCCEEEEEEeecCCCC-CEEEEEECCCCCcCCCceEEEEeCCeEcccccCccEEEecCccCCeEEEEEccCCHHHC
Confidence            45689999999998643222 2346798873        3334221     1367888652     35799999998874


Q ss_pred             Ccceeeeeeh
Q psy5692          80 NLSVKKMKVE   89 (98)
Q Consensus        80 n~~~~~~~~~   89 (98)
                        ..=.|.++
T Consensus        87 --G~Y~C~v~   94 (115)
T 2or7_A           87 --GPYCCVVE   94 (115)
T ss_dssp             --EEEEEEEC
T ss_pred             --EEEEEEEE
Confidence              44555554

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=95.78  E-value=0.0018  Score=42.71  Aligned_cols=66  Identities=18%  Similarity=0.153  Sum_probs=41.8

Q ss_pred             ceeecCeEEEEccCC-CCccceeEEeEEccCCeeeecCcCCCceEEEcc--------CccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIP-SYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS--------SGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IP-s~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp--------sGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+..|.++.|.|.+. ..-.   ....|.+++..|.+......++.+.+        ++.|.|++++..|.-  .-.|.+
T Consensus        13 ~v~~G~~v~l~C~~~~~~p~---~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G--~Y~C~~   87 (195)
T 2c5d_C           13 TGARGLTGTLRCQLQVQGEP---PEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG--QYQCLV   87 (195)
T ss_dssp             EECTTCCEEEEEEEEEESSC---CCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE--EEEEEE
T ss_pred             EEecCCcEEEecccccCCCC---cEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc--EEEEEE
Confidence            677899999999976 3322   24789999977754211112333344        367999998877642  344544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=95.77  E-value=0.0031  Score=48.16  Aligned_cols=58  Identities=17%  Similarity=0.248  Sum_probs=40.0

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      .|..|.+++|.|.+...-   ....+|.+++..+.+ ....+||.+.++|.|.|++++.+|.
T Consensus       396 ~v~~G~~v~l~C~~~g~P---~p~i~W~~~~~~~~~-~~~~~~~~~~~~~~L~i~~v~~~d~  453 (477)
T 2id5_A          396 FVDEGHTVQFVCRADGDP---PPAILWLSPRKHLVS-AKSNGRLTVFPDGTLEVRYAQVQDN  453 (477)
T ss_dssp             EEETTCCEEECCCEEEES---CCEEEEECTTSCBC--------CEECTTSCEEESSCCSTTC
T ss_pred             EEeCCCeEEEEEeccccC---CCEEEEEECCccccc-cCCCceEEeCCCCEEEEeeCChHHC
Confidence            567899999999974222   234679999855432 2246899999999999999998874

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=95.76  E-value=0.0046  Score=38.70  Aligned_cols=66  Identities=14%  Similarity=0.158  Sum_probs=42.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----e-eeecCc----CCCceEEEccC---ccEEEEeEeeecCCccee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----V-NIYLNT----DTGGKYVVLSS---GDLYVQIRLSITGNLSVK   84 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~-~I~p~~----~~dgKY~vlps---GeL~Ir~v~~~~~n~~~~   84 (98)
                      .|..|.+|+|.|.+.+...   ....|.+..     . .++...    ...+||.+..+   ..|.|++++.+|.  ..=
T Consensus        12 ~v~~G~~v~L~C~~~~~~~---~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds--G~Y   86 (108)
T 1qfw_M           12 SMSVGERVTLSCKASETVD---SFVSWYQQKPEQSPKLLIFGASNRFSGVPDRFTGSGSATDFTLTISSVQAEDF--ADY   86 (108)
T ss_dssp             ECCTTCCEEEEEEESSCCC---SCEEEEEECTTSCCEEEECSSSCBCTTCCTTEECCBCSSEEEEEESSCCTTCC--SEE
T ss_pred             EEcCCCCEEEEeeeCCCCC---cEEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEEcCCCEEEEEECCCChhhC--EEE
Confidence            4668999999999865442   246898753     2 222211    13579988754   3699999998774  344


Q ss_pred             eeee
Q psy5692          85 KMKV   88 (98)
Q Consensus        85 ~~~~   88 (98)
                      -|.+
T Consensus        87 ~C~~   90 (108)
T 1qfw_M           87 HCGQ   90 (108)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4444

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=95.75  E-value=0.0037  Score=41.78  Aligned_cols=58  Identities=16%  Similarity=0.070  Sum_probs=37.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      .|..|.+++|.|..+.   . -....|.+++..+.+............+|.|.|.+++.+|.
T Consensus       110 ~v~~G~~v~L~C~~~~---~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  167 (196)
T 3p2t_A          110 LVTSGKSVTLLCQSRS---P-MDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHG  167 (196)
T ss_dssp             EECTTCCEEEEEEEEE---E-EEEEEEEETTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGC
T ss_pred             eecCCCeEEEEEecCC---C-CCEEEEEeCCCcccceeecccccccCcceEEEeCCCcccCC
Confidence            4778999999999753   2 23568999985553311000111234578899999887764

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=95.74  E-value=0.011  Score=38.93  Aligned_cols=53  Identities=11%  Similarity=0.146  Sum_probs=37.4

Q ss_pred             ecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCcc---EEEEeEeeecC
Q psy5692          21 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVQIRLSITG   79 (98)
Q Consensus        21 rGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGe---L~Ir~v~~~~~   79 (98)
                      .|.++.|.|.+..+-  -.....|.+++..|.+    +++|.+..+|.   |.|++++.+|.
T Consensus        16 ~~~~~~l~C~~~~~~--p~~~i~W~~~g~~i~~----~~~~~~~~~~~~~~L~i~~v~~~D~   71 (212)
T 2r15_A           16 TAEGIQLYSFVTYYV--EDLKVNWSHNGSAIRY----SDRVKTGVTGEQIWLQINEPTPNDK   71 (212)
T ss_dssp             CSSEEEEEEEBSSCC--SSCEEEEEETTEECCC----CSSEEEEEETTEEEEEEESCCGGGC
T ss_pred             cCceEEEEEEEeccC--CCceEEEEECCEEccC----CCeEEEEEeCCEEEEEECCCCcccC
Confidence            355667777766442  1335789999977755    57888877665   99999988775

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=95.74  E-value=0.0088  Score=41.66  Aligned_cols=60  Identities=10%  Similarity=0.148  Sum_probs=43.6

Q ss_pred             ceeecCeEEEEccCC-CCccceeEEeEEccCCeeeecCcCCCceEEEccCcc-----EEEEeEeeecCCcceeee
Q psy5692          18 NVILGNTAVLRCQIP-SYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD-----LYVQIRLSITGNLSVKKM   86 (98)
Q Consensus        18 ~VirGNtAVLkC~IP-s~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGe-----L~Ir~v~~~~~n~~~~~~   86 (98)
                      .+..|.++.|.|.+. ..-.   ...+|.+++..|.+    +++|.+..++.     |.|++++.+|.-  .-.|
T Consensus       118 ~v~~G~~v~l~C~~~~~~p~---~~v~W~~~~~~i~~----~~~~~~~~~~~~~~~~L~i~~~~~~d~G--~Y~C  183 (312)
T 2y23_A          118 EILEKGQVRFWMQAEKLSGN---AKVNYIFNEKEIFE----GPKYKMHIDRNTGIIEMFMEKLQDEDEG--TYTF  183 (312)
T ss_dssp             EECSSSCEEEEEEESCCCSS---CEEEEEETTEEECS----SSSCEEEEETTTTEEEEEESCCCGGGCE--EEEE
T ss_pred             EEeeCCCEEEEEEEEeCCCC---CEEEEEECCEECee----CCcEEEEEccCCCEEEEEEccCCcccCE--eEEE
Confidence            678999999999976 3332   34579999987755    47787776544     999998877652  4445

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=95.73  E-value=0.004  Score=41.70  Aligned_cols=66  Identities=17%  Similarity=0.259  Sum_probs=42.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC--e----eeecC----cCCCceEEEccCc---cEEEEeEeeecCCccee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V----NIYLN----TDTGGKYVVLSSG---DLYVQIRLSITGNLSVK   84 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd--~----~I~p~----~~~dgKY~vlpsG---eL~Ir~v~~~~~n~~~~   84 (98)
                      .|..|.+++|.|.+......   ...|+++.  .    .++..    ....+||.+..++   .|.|++++.+|.  ..-
T Consensus        10 ~v~~G~~v~L~C~~~~~~~~---~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~--G~Y   84 (212)
T 1nfd_E           10 SVTVGETVKITCSGDQLPKN---FAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDE--AAY   84 (212)
T ss_dssp             EEETTSCCCEEEEETTGGGS---CCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGC--SEE
T ss_pred             EEeCCCcEEEEEecCCCCCC---eEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccC--EEE
Confidence            45689999999997554433   37898752  1    11211    1235899887543   799999998775  334


Q ss_pred             eeee
Q psy5692          85 KMKV   88 (98)
Q Consensus        85 ~~~~   88 (98)
                      .|.+
T Consensus        85 ~C~~   88 (212)
T 1nfd_E           85 YCLS   88 (212)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=95.72  E-value=0.0076  Score=41.70  Aligned_cols=62  Identities=19%  Similarity=0.384  Sum_probs=43.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEc---cCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL---SSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vl---psGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+..|.++.|.|.+...-.   ....|.+++..|.+    +++|.+.   .++.|.|.+++..|.-  .-.|.+
T Consensus        16 ~~~~G~~v~l~C~~~g~p~---~~v~W~~~~~~~~~----~~~~~~~~~~~~~~L~i~~v~~~d~G--~Y~C~~   80 (284)
T 2rik_A           16 DLALGESGTFKCHVTGTAP---IKITWAKDNREIRP----GGNYKMTLVENTATLTVLKVTKGDAG--QYTCYA   80 (284)
T ss_dssp             EEETTCCEEEEEEEESSSC---CEEEEEETTEECCS----SSSEEEEEETTEEEEEESSCCGGGCE--EEEEEE
T ss_pred             EecCCCcEEEEEEEEcCCC---CEEEEEECCEECcC----CCcEEEEEcCCEEEEEEecCCcccCE--EEEEEE
Confidence            5778999999999864322   25789999977754    4566553   3578999998887753  444544

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=95.71  E-value=0.0041  Score=39.34  Aligned_cols=65  Identities=15%  Similarity=0.219  Sum_probs=41.0

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC--e---eeecCcCCCceEEEcc-----CccEEEEeEeeecCCcceeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NIYLNTDTGGKYVVLS-----SGDLYVQIRLSITGNLSVKKMK   87 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd--~---~I~p~~~~dgKY~vlp-----sGeL~Ir~v~~~~~n~~~~~~~   87 (98)
                      .|..|.++.|.|.+....... ....|.++.  .   .+.   ..++||.+..     ++.|.|++++.+|.  +.=-|.
T Consensus        11 ~~~~G~~v~L~C~~~~~~~~~-~~v~W~r~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~L~I~~v~~~Ds--G~Y~C~   84 (111)
T 2ywz_A           11 TKETGESLTIKCVLKDHSCGL-SSTTWYRTQLGSTNEKTI---SIGGRYDETVDKGSKSFSLRISDLRVEDS--GTYKCQ   84 (111)
T ss_dssp             EECTTCCEEEEEEEESCSSCC-CEEEEEEEETTCCCCEEC---CSBTTEEEEEETTTTEEEEEECSCCGGGC--EEEEEE
T ss_pred             EEccCCCEEEEeEECCCCCCC-CEEEEEEeCCCCCceEee---EeCCCEEEEEeCCCCEEEEEECCCChhcC--EEEEEE
Confidence            455899999999985432122 346899863  1   121   1367887642     45699999998764  444454


Q ss_pred             e
Q psy5692          88 V   88 (98)
Q Consensus        88 ~   88 (98)
                      +
T Consensus        85 ~   85 (111)
T 2ywz_A           85 A   85 (111)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=95.70  E-value=0.018  Score=39.81  Aligned_cols=63  Identities=16%  Similarity=0.268  Sum_probs=45.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc-CccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS-SGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp-sGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .+..|.++.|.|.+..+-.-   ..+|.+++..|.+    +.+|.+.. ++.|.|.+++.+|.  ..-.|.++
T Consensus       205 ~~~~g~~~~l~C~~~g~p~p---~v~W~~~g~~~~~----~~~~~~~~~~~~L~i~~~~~~d~--G~Y~C~a~  268 (291)
T 2wim_A          205 TAERGEEMTFSCRASGSPEP---AISWFRNGKLIEE----NEKYILKGSNTELTVRNIINSDG--GPYVCRAT  268 (291)
T ss_dssp             CSSSCCEEEEECBCCCBSCC---EEEEEETTEECCC----TTTEEECSTTCEEEEESCCSTTC--EEEEEEEE
T ss_pred             eecCCCeEEEEEEeecCCCC---eEEEEECCEECcC----CccEEEcCCccEEEEeeCCcccC--EEEEEEEE
Confidence            45689999999998755332   3789999977644    45777754 67899999887764  35556543

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=95.70  E-value=0.01  Score=41.05  Aligned_cols=63  Identities=19%  Similarity=0.296  Sum_probs=45.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCc---cEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG---eL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .+..|.++.|.|.+..+-.   ...+|.+++..|.+    +.+|.+.+.|   .|.|.+++.+|.  ..-.|.+.
T Consensus       203 ~~~~g~~v~l~C~~~g~p~---~~v~W~~~~~~~~~----~~~~~~~~~~~~~~L~i~~v~~~d~--G~Y~C~a~  268 (284)
T 2rik_A          203 ETLKGADVHLECELQGTPP---FQVSWHKDKRELRS----GKKYKIMSENFLTSIHILNVDSADI--GEYQCKAS  268 (284)
T ss_dssp             EECTTCCEEEEEECBSSSC---CEEEEEETTEEECB----TTTEEEEEETTEEEEEECSCCGGGC--EEEEEEEE
T ss_pred             eecCCCeEEEEEEEEecCC---CEEEEEECCEECcC----CCCEEEEEcCCEEEEEEcCCCcccC--EEEEEEEE
Confidence            4678999999999865433   34789999977754    5688887654   788999887764  34555543

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=95.70  E-value=0.012  Score=36.65  Aligned_cols=66  Identities=15%  Similarity=0.212  Sum_probs=42.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----e-eeecCc----CCCceEEEccCc---cEEEEeEeeecCCccee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----V-NIYLNT----DTGGKYVVLSSG---DLYVQIRLSITGNLSVK   84 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~-~I~p~~----~~dgKY~vlpsG---eL~Ir~v~~~~~n~~~~   84 (98)
                      .|..|.+|+|.|.+......   ...|.+..     . .++...    ...+||.+..++   .|.|++++.+|.  +.=
T Consensus        12 ~~~~G~~v~L~C~~~~~~~~---~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds--G~Y   86 (107)
T 1i8k_A           12 SVATGEKVTIRCMTSTDIDD---DMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDV--GDY   86 (107)
T ss_dssp             ECCTTCCEEEEEEESSCCTT---CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC--EEE
T ss_pred             EecCCCCEEEEEEECCCCCC---cEEEEEECCCCCCEEEEEecCccCCCCCCCEEEEccCCEEEEEECCCCHHHC--EEE
Confidence            45689999999998654422   35898753     1 233211    236799886543   699999998774  344


Q ss_pred             eeee
Q psy5692          85 KMKV   88 (98)
Q Consensus        85 ~~~~   88 (98)
                      -|.+
T Consensus        87 ~C~~   90 (107)
T 1i8k_A           87 YCLQ   90 (107)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=95.70  E-value=0.0038  Score=43.22  Aligned_cols=64  Identities=17%  Similarity=0.183  Sum_probs=46.0

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-eeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .+..|.++.|.|.+...-.  ....+|.+.+ ..+ +   .+.+|.+.++|.|.|.+++.+|.  ..-.|.+.
T Consensus       100 ~v~~g~~v~L~C~~~~~~~--~~~v~W~~~~~~~~-~---~~~~~~~~~~~~L~i~~v~~~d~--G~Y~C~a~  164 (289)
T 3ejj_X          100 TVVEGQEAVLPCLITDPAL--KDSVSLMREGGRQV-L---RKTVYFFSPWRGFIIRKAKVLDS--NTYVCKTM  164 (289)
T ss_dssp             EEETTSCEEECEEESCGGG--GGSEEEEEGGGEEC-C---TTCCEEEETTTEEEESSCCGGGC--EEEEEEEE
T ss_pred             EEecCCceEeEEEccCCCc--ceEEEEEecCCeec-C---CCccEEECCCCCEEEeecccccC--EEEEEEEE
Confidence            6778999999999864221  1226798655 544 3   36799999999999999988875  34566554

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=95.69  E-value=0.0049  Score=41.91  Aligned_cols=68  Identities=12%  Similarity=0.176  Sum_probs=43.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-ecC-----------cCCCceEEEccCcc-----EEEEeEe
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN-----------TDTGGKYVVLSSGD-----LYVQIRL   75 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~p~-----------~~~dgKY~vlpsGe-----L~Ir~v~   75 (98)
                      .|..|.+++|.|.+..+-... ....|++..     ..+ +-.           ....|||.+..++.     |.|++++
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   89 (221)
T 3m8o_H           11 LVQPGGSLKLSCAASGFTLSG-SNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNSLK   89 (221)
T ss_dssp             EECTTCCEEEEEEEESSCGGG-SEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECSCC
T ss_pred             EEcCCCCEEEEEEcccccccc-cEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECCCC
Confidence            566899999999986432222 356897642     111 111           12358999986553     9999999


Q ss_pred             eecCCcceeeeee
Q psy5692          76 SITGNLSVKKMKV   88 (98)
Q Consensus        76 ~~~~n~~~~~~~~   88 (98)
                      .+|.  ..-.|.+
T Consensus        90 ~~Ds--G~Y~C~~  100 (221)
T 3m8o_H           90 SDDT--AMYYCVI  100 (221)
T ss_dssp             GGGC--EEEEEEE
T ss_pred             HHHC--EEEEEEE
Confidence            8874  4445544

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=95.68  E-value=0.0047  Score=47.99  Aligned_cols=59  Identities=17%  Similarity=0.214  Sum_probs=42.6

Q ss_pred             ceeecCeEEEEccC-CCCccceeEEeEEccCCe--eeec------CcCCCceEEEccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQI-PSYMSEYIIVTSWIQDDV--NIYL------NTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~I-Ps~V~d~V~V~SW~~Dd~--~I~p------~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      .+..|.+++|.|.+ ++.-   ....+|.+++.  .++.      .....+|+.+.++|.|.|++++.+|.
T Consensus       377 ~~~~G~~v~L~C~~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~  444 (581)
T 3o3u_N          377 TARIGEPLVLKCKGAPKKP---PQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDE  444 (581)
T ss_dssp             EEETTSCEEECCTTCCSSS---SCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGC
T ss_pred             ceecCCcEEEeeeecCCCC---CceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccC
Confidence            67799999999998 3322   23578998863  2221      01236799999999999999998874

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=95.67  E-value=0.0083  Score=41.92  Aligned_cols=57  Identities=21%  Similarity=0.347  Sum_probs=41.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEc--cCc--cEEEEeEeeecCC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL--SSG--DLYVQIRLSITGN   80 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vl--psG--eL~Ir~v~~~~~n   80 (98)
                      .|..|.++.|.|.+...-.   ....|.+++..+.+   .+.+|.+.  ..|  .|.|++++.+|.-
T Consensus        15 ~v~~G~~v~l~C~~~g~p~---~~v~W~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~v~~~d~G   75 (305)
T 2nzi_A           15 NVRYQSNATLVCKVTGHPK---PIVKWYRQGKEIIA---DGLKYRIQEFKGGYHQLIIASVTDDDAT   75 (305)
T ss_dssp             EECTTCCEEEEEEEECSSC---CEEEEEETTEECCC---CSSSEEEEEETTTEEEEEESSCCGGGCS
T ss_pred             EEeCCCcEEEEEEEeCCCC---CeEEEEECCEEccc---CCCeEEEEECCCCEEEEEEccCChhhCe
Confidence            6778999999999743322   35789999977754   35677764  344  7999999887753

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=95.67  E-value=0.021  Score=40.29  Aligned_cols=69  Identities=14%  Similarity=0.218  Sum_probs=46.1

Q ss_pred             ceeecCeEEEEccCCCCccc-eeEEeEEccCC----eeee---------cCcCCCceEEEc----cCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSE-YIIVTSWIQDD----VNIY---------LNTDTGGKYVVL----SSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d-~V~V~SW~~Dd----~~I~---------p~~~~dgKY~vl----psGeL~Ir~v~~~~~   79 (98)
                      .|..|.+++|.|.+...-.+ -.....|.+++    ..+.         ......+|+.+.    .++.|.|++++..|.
T Consensus        25 ~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~  104 (331)
T 3u83_A           25 YGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDE  104 (331)
T ss_dssp             EEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCEEECSCCGGGC
T ss_pred             EEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceEEEcccCcccC
Confidence            67899999999998654222 45568899953    1111         012356888876    478899999988775


Q ss_pred             Ccceeeeee
Q psy5692          80 NLSVKKMKV   88 (98)
Q Consensus        80 n~~~~~~~~   88 (98)
                        ..-.|.+
T Consensus       105 --G~Y~C~~  111 (331)
T 3u83_A          105 --GVYICEF  111 (331)
T ss_dssp             --EEEEEEE
T ss_pred             --cEEEEEE
Confidence              3455553

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=95.67  E-value=0.013  Score=40.74  Aligned_cols=56  Identities=13%  Similarity=0.207  Sum_probs=40.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccC---c--cEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS---G--DLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlps---G--eL~Ir~v~~~~~   79 (98)
                      -|+.|.++.|.|.+...  .=-...+|++++..|.+    +.+|.+..+   |  .|.|++++.+|.
T Consensus        13 ~v~eg~~v~l~c~~~~~--~P~p~i~W~kng~~l~~----~~~~~~~~~~~~g~~~L~I~~v~~~D~   73 (207)
T 3rbs_A           13 EILEKGQVRFWMQAEKL--SGNAKVNYIFNEKEIFE----GPKYKMHIDRNTGIIEMFMEKLQDEDE   73 (207)
T ss_dssp             EECGGGCEEEEEECSCC--CSCCEEEEEETTEEECS----SSSCEEEECTTTCEEEEEESCCCGGGC
T ss_pred             EEEeCCeEEEEEEEecC--CCCCEEEEEECCEECcc----CCCEEEEEeCCCCEEEEEECCCChhhC
Confidence            57889999999987421  11134589999988866    456666544   3  599999988874

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=95.66  E-value=0.011  Score=40.60  Aligned_cols=65  Identities=12%  Similarity=0.021  Sum_probs=40.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-e-------cCcCCCceEEEccC----ccEEEEeEeeecCC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-Y-------LNTDTGGKYVVLSS----GDLYVQIRLSITGN   80 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~-------p~~~~dgKY~vlps----GeL~Ir~v~~~~~n   80 (98)
                      .|..|.+|+|.|.+..   .. ....|++..     ..+ +       ......+||.+..+    +.|.|++++.+|. 
T Consensus        13 ~v~~G~~v~L~C~~~~---~~-~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~-   87 (240)
T 3q5y_A           13 IKEKGGRSVLTCIPIS---GH-SNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDS-   87 (240)
T ss_dssp             EEETTCCEEEEEECCT---TC-CEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGC-
T ss_pred             eecCCCcEEEEEEeCC---CC-ceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCChhHC-
Confidence            4668999999999753   22 256898721     111 1       11123479988753    3599999998874 


Q ss_pred             cceeeeee
Q psy5692          81 LSVKKMKV   88 (98)
Q Consensus        81 ~~~~~~~~   88 (98)
                       ..-.|.+
T Consensus        88 -G~Y~C~~   94 (240)
T 3q5y_A           88 -AMYFCAS   94 (240)
T ss_dssp             -EEEEEEE
T ss_pred             -EEEEEEE
Confidence             3444444

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=95.66  E-value=0.0075  Score=40.46  Aligned_cols=56  Identities=20%  Similarity=0.285  Sum_probs=39.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc--Cc--cEEEEeEee-ecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS--SG--DLYVQIRLS-ITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp--sG--eL~Ir~v~~-~~~   79 (98)
                      .|..|.++.|.|.+...-..   ...|.+++..|..   .++||.+..  +|  .|.|.+++. .|.
T Consensus        17 ~v~~G~~v~l~C~~~g~p~~---~v~W~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~v~~~~d~   77 (212)
T 2yd1_A           17 GVRVGGVASFYCAARGDPPP---SIVWRKNGKKVSG---TQSRYTVLEQPGGISILRIEPVRAGRDD   77 (212)
T ss_dssp             EEETTSCEEEEEEEECSSCC---EEEEEETTEECCT---TSTTEEEEEETTTEEEEEESSCCTTTTC
T ss_pred             EEecCCEEEEEEEEccCCCC---eEEEEECCEECCC---CcceeEEEEcCCCeEEEEEEecCCCCcC
Confidence            57799999999997543322   6789999976643   367777753  43  688888876 543

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=95.65  E-value=0.0081  Score=40.66  Aligned_cols=68  Identities=16%  Similarity=0.071  Sum_probs=42.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----e-eeecC----cCCCceEEEcc---CccEEEEeEeeecCCccee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----V-NIYLN----TDTGGKYVVLS---SGDLYVQIRLSITGNLSVK   84 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~-~I~p~----~~~dgKY~vlp---sGeL~Ir~v~~~~~n~~~~   84 (98)
                      .|..|.+++|.|.+...-.... ..+|.+++     . .+|..    ....+||.+..   ++.|.|++++.+|.  ..-
T Consensus        30 ~v~~G~~v~L~C~~~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~--G~Y  106 (234)
T 2j6e_L           30 SGTPGQRVTISCSGSSSNIGSN-YVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDE--ADY  106 (234)
T ss_dssp             CBCTTCEEEEEEECCTTTTTTS-CCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTC--SEE
T ss_pred             EeeCCCcEEEEEEecCCCCCCC-eEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHC--EEE
Confidence            5779999999999864322211 26898753     1 22211    12357898874   34799999998775  344


Q ss_pred             eeee
Q psy5692          85 KMKV   88 (98)
Q Consensus        85 ~~~~   88 (98)
                      .|.+
T Consensus       107 ~C~~  110 (234)
T 2j6e_L          107 YCAT  110 (234)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4444

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=95.64  E-value=0.0052  Score=41.67  Aligned_cols=61  Identities=13%  Similarity=0.209  Sum_probs=39.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-e--cC---------cCCCceEEEcc-----CccEEEEeEe
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-Y--LN---------TDTGGKYVVLS-----SGDLYVQIRL   75 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~--p~---------~~~dgKY~vlp-----sGeL~Ir~v~   75 (98)
                      .|..|.+|+|.|.+..+-.. ....+|+++.     ..| +  ..         ....+||.+.+     ++.|.|++++
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   89 (222)
T 1q9r_B           11 LVQSGGSLRLSCATSGFTFT-DYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLR   89 (222)
T ss_dssp             EECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred             eEcCCCEEEEEEEecCccCC-CCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECcCC
Confidence            56789999999998543211 1345898753     111 1  11         12358999875     3489999999


Q ss_pred             eecC
Q psy5692          76 SITG   79 (98)
Q Consensus        76 ~~~~   79 (98)
                      .+|.
T Consensus        90 ~~D~   93 (222)
T 1q9r_B           90 AEDS   93 (222)
T ss_dssp             GGGC
T ss_pred             cccC
Confidence            8875

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=95.64  E-value=0.011  Score=42.58  Aligned_cols=56  Identities=14%  Similarity=0.149  Sum_probs=41.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      .+..|.++.|.|.+..+-.  ....+|.+++..+..   .+.+|... ++.|.|++++.+|.
T Consensus       139 ~~~~G~~v~L~C~~~g~p~--~~~i~W~k~~~~l~~---~~~~~~~~-~~~L~I~~v~~~D~  194 (329)
T 3oq3_B          139 GTHDKYGIDLYCGILYAKH--YNNITWYKNNQELII---DGTKYSQS-GQNLIIHNPELEDS  194 (329)
T ss_dssp             TSSTTTCEEEECCCCSCCC--CCEEEEEETTEECCC---SSSSEEEE-TTEEEECSCCGGGC
T ss_pred             EEeCCCcEEEEeccCCCCC--CceEEEEECCccCCC---CCceEecC-CCEEEEeecChhhC
Confidence            4567999999998764321  345789999976632   35688777 89999999887763

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=95.63  E-value=0.0064  Score=41.02  Aligned_cols=68  Identities=15%  Similarity=0.237  Sum_probs=42.7

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC--e---ee-ecC---------cCCCceEEEcc-----CccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NI-YLN---------TDTGGKYVVLS-----SGDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd--~---~I-~p~---------~~~dgKY~vlp-----sGeL~Ir~v~~~   77 (98)
                      .|..|.+|+|.|.+..+-... ....|.+++  .   .+ +-.         ....+||.+..     ++.|.|++++.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   89 (219)
T 1c1e_H           11 LKKPGETVKISCKASGYMFTN-YGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNLKNE   89 (219)
T ss_dssp             EECTTCCEEEEEEEESSCGGG-SEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSCCGG
T ss_pred             EecCCCcEEEEEEEeCccccc-ceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCCCcc
Confidence            456899999999986442111 346898763  1   11 111         12358999875     368999999988


Q ss_pred             cCCcceeeeee
Q psy5692          78 TGNLSVKKMKV   88 (98)
Q Consensus        78 ~~n~~~~~~~~   88 (98)
                      |.  ..-.|.+
T Consensus        90 D~--G~Y~C~~   98 (219)
T 1c1e_H           90 DM--ATYFCAR   98 (219)
T ss_dssp             GC--EEEEEEE
T ss_pred             cC--EEEEEEE
Confidence            75  3334444

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=95.62  E-value=0.019  Score=41.54  Aligned_cols=62  Identities=13%  Similarity=0.112  Sum_probs=43.8

Q ss_pred             eeeeceeecCeEEEEccCCCCccceeEEeEEccC--CeeeecC-cCCCceEEEcc---CccEEEEeEeeecC
Q psy5692          14 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD--DVNIYLN-TDTGGKYVVLS---SGDLYVQIRLSITG   79 (98)
Q Consensus        14 ~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~D--d~~I~p~-~~~dgKY~vlp---sGeL~Ir~v~~~~~   79 (98)
                      .+. .++.|.++.|.|.+...-.   ....|.++  +..|.+. ...++||.+..   +|.|.|++++.+|.
T Consensus         8 ~~~-~~~~G~~v~l~C~~~g~p~---p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~   75 (389)
T 2jll_A            8 KNE-TTYENGQVTLVCDAEGEPI---PEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDS   75 (389)
T ss_dssp             CCE-EEETTSEEEEEEEEECSSC---CEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGC
T ss_pred             Cce-EEeCCCeEEEEEEeecccC---CeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhC
Confidence            344 6788999999999754322   23589999  5666432 12378999874   57899999988765

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=95.55  E-value=0.0063  Score=39.89  Aligned_cols=66  Identities=9%  Similarity=0.054  Sum_probs=44.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeee--------cCcCCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIY--------LNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~--------p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .|..|.++.|.|.+...   -.....|.+++..+.        .....++|+.+.. +.|.|++++..|.-  .-.|.+.
T Consensus        12 ~v~~G~~v~L~C~~~~~---p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~L~i~~v~~~D~G--~Y~C~~~   85 (212)
T 1f97_A           12 QVPENESIKLTCTYSGF---SSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS-SGITFSSVTRKDNG--EYTCMVS   85 (212)
T ss_dssp             EEETTCCEEEECEEESC---SSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET-TEEEESCCCGGGCE--EEEEEEE
T ss_pred             EEEcCCCEEEEeEeCCC---CCcEEEEEECCCceeeEEecCCcccccccCcEEeec-eeEEEcccCcccCe--EEEEEEE
Confidence            46789999999998643   234678999873321        0122467887765 99999999887653  4455543

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.54  E-value=0.0066  Score=36.73  Aligned_cols=49  Identities=27%  Similarity=0.348  Sum_probs=33.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      .+..|.++.|.|.+...-.   ....|.+++..+...          +++.|.|.+++.+|.
T Consensus        21 ~v~~G~~v~l~C~~~g~p~---~~v~W~k~~~~~~~~----------~~~~L~i~~v~~~d~   69 (96)
T 2ens_A           21 AVAPGGTVTLTCEVPAQPS---PQIHWMKDGVPLPLP----------PSPVLILPEIGPQDQ   69 (96)
T ss_dssp             EECTTCEEEEECCCSSCSS---CCCCCEESSSBCSSC----------CCSEEEEESCCTTTC
T ss_pred             EEcCCCeEEEEEEEccCCC---CEEEEEECCEECcCC----------CCCEEEECCCCcccC
Confidence            5789999999999854333   245899988665331          246777777766653

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=95.52  E-value=0.0085  Score=41.65  Aligned_cols=62  Identities=18%  Similarity=0.214  Sum_probs=41.4

Q ss_pred             ceeecCeEEEEccCCCCccc--eeEEeEEccCC------eeeec----CcCCCceEEEccCc---cEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSE--YIIVTSWIQDD------VNIYL----NTDTGGKYVVLSSG---DLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d--~V~V~SW~~Dd------~~I~p----~~~~dgKY~vlpsG---eL~Ir~v~~~~~   79 (98)
                      .|..|.+++|.|.+......  -.....|.+++      ..+|.    .....+||.+..+|   .|.|++++.+|.
T Consensus        45 ~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~  121 (252)
T 3bkj_L           45 PVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRVEAEDL  121 (252)
T ss_dssp             EECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCCCcccC
Confidence            46799999999998644311  12346898753      12221    11235899988765   799999998875

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=95.51  E-value=0.0064  Score=42.80  Aligned_cols=68  Identities=15%  Similarity=0.205  Sum_probs=42.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-ecC---------cCCCceEEEccCcc-----EEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN---------TDTGGKYVVLSSGD-----LYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~p~---------~~~dgKY~vlpsGe-----L~Ir~v~~~   77 (98)
                      .|..|.+++|.|.+..+-... ....|++..     ..+ +-.         ....|||.+..++.     |.|++++.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   89 (253)
T 3liz_H           11 LVQPGGSLKLSCAASGFTFSS-FAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSLKSE   89 (253)
T ss_dssp             EECTTCCEEEEEEEESSCGGG-SCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSCCGG
T ss_pred             EECCCCcEEEEEEeeCccccC-ceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCChh
Confidence            577899999999986432222 235787642     122 111         12358999986554     999999988


Q ss_pred             cCCcceeeeee
Q psy5692          78 TGNLSVKKMKV   88 (98)
Q Consensus        78 ~~n~~~~~~~~   88 (98)
                      |.  ..-.|.+
T Consensus        90 Ds--G~Y~C~~   98 (253)
T 3liz_H           90 DT--AMYYCTR   98 (253)
T ss_dssp             GC--EEEEEEE
T ss_pred             hC--EEEEEEE
Confidence            74  3444444

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=95.51  E-value=0.012  Score=40.41  Aligned_cols=59  Identities=15%  Similarity=0.297  Sum_probs=40.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-ecC----cCCCceEEEccCc---cEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN----TDTGGKYVVLSSG---DLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~p~----~~~dgKY~vlpsG---eL~Ir~v~~~~~   79 (98)
                      .|..|.+++|.|.+...-..   ...|.+++     ..| +..    ....+||.+.+++   .|.|++++.+|.
T Consensus        15 ~v~~G~~v~L~C~~~~~~~~---~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   86 (250)
T 3esu_F           15 SASLGDRVTISCRASQDIRN---YLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQEDI   86 (250)
T ss_dssp             EECTTCCEEEEEEESSCCTT---CEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EeeCCCcEEEEEEecccCCc---eEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhhC
Confidence            45689999999998665554   45798753     222 211    1236899876654   799999988774

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=95.50  E-value=0.0081  Score=40.64  Aligned_cols=66  Identities=11%  Similarity=0.150  Sum_probs=42.5

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCCeeeecCc--------------------CCCceEEEccCccEEEEeEeeec
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT--------------------DTGGKYVVLSSGDLYVQIRLSIT   78 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~--------------------~~dgKY~vlpsGeL~Ir~v~~~~   78 (98)
                      +..|.++.|.|.+...-..   ...|.+++..|....                    ...++.....++.|.|++++.+|
T Consensus       148 v~~g~~v~L~C~~~g~p~p---~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D  224 (250)
T 2fbo_J          148 VDEGNDITMTCPCTDCANA---NVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITD  224 (250)
T ss_dssp             CCTTCCEEECCCEESCTTC---EEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGG
T ss_pred             ecCCCcEEEEEEecCCCCC---eeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCccc
Confidence            4469999999998654444   678999986552211                    11233333356899999999887


Q ss_pred             CCcceeeeeeh
Q psy5692          79 GNLSVKKMKVE   89 (98)
Q Consensus        79 ~n~~~~~~~~~   89 (98)
                      .  ..-.|...
T Consensus       225 ~--G~Y~C~a~  233 (250)
T 2fbo_J          225 A--GRVWCELA  233 (250)
T ss_dssp             C--EEEEEEEE
T ss_pred             C--EEEEEEec
Confidence            4  34555543

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=95.48  E-value=0.0091  Score=37.08  Aligned_cols=66  Identities=15%  Similarity=0.173  Sum_probs=42.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC------eeeecC----cCCCceEEEccC---ccEEEEeEeeecCCccee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIYLN----TDTGGKYVVLSS---GDLYVQIRLSITGNLSVK   84 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd------~~I~p~----~~~dgKY~vlps---GeL~Ir~v~~~~~n~~~~   84 (98)
                      .|..|.+|.|.|.+.....   ....|.+.+      ..++..    ....+||.+..+   +.|.|++++.+|.  ..=
T Consensus        12 ~~~~G~~v~L~C~~~~~~~---~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds--G~Y   86 (108)
T 1jhl_L           12 VASPGETITINCRASKSIS---KSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDF--AMY   86 (108)
T ss_dssp             EECTTSCEEEEEEESSCCT---TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCC--SEE
T ss_pred             EEcCCCCEEEEeEECCCCC---ceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEecCCEEEEEECCCCHHHC--EEE
Confidence            4568999999999865542   246898753      123321    123579988653   4799999998774  334


Q ss_pred             eeee
Q psy5692          85 KMKV   88 (98)
Q Consensus        85 ~~~~   88 (98)
                      .|.+
T Consensus        87 ~C~~   90 (108)
T 1jhl_L           87 ICQQ   90 (108)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=95.48  E-value=0.012  Score=39.65  Aligned_cols=47  Identities=11%  Similarity=0.145  Sum_probs=34.3

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      +..|.++.|.|.+|.      -..+|++|+..|.+...        .++.|.|.+++..|.
T Consensus       119 ~~~G~~v~l~C~~p~------p~i~W~k~g~~i~~~~~--------~~~~L~i~~v~~~D~  165 (186)
T 1jbj_A          119 SRGDGSVLLTCGLTD------KTIKWLKDGSIISPLNA--------TKNTWNLGNNAKDPR  165 (186)
T ss_dssp             CSSSCEEEEECSSSC------SCEEEEETTEECCCSSC--------CSSCCEEEETTSCCE
T ss_pred             cCCCCeEEEEeeCCC------CeEEEEECCEECcccCC--------CcceEEECCCCcCcC
Confidence            348999999999963      24689999977744211        577888888877663

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=95.46  E-value=0.012  Score=38.12  Aligned_cols=63  Identities=16%  Similarity=0.167  Sum_probs=42.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc-----CccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS-----SGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp-----sGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .+..|.++.|.|.+...-.   ....|.+++..+.+    +.++.+..     ++.|.|++++.+|.-  .-.|.+.
T Consensus        13 ~v~~G~~v~l~C~~~~~p~---~~v~W~k~~~~~~~----~~~~~~~~~~~~~~~~L~i~~~~~~d~G--~Y~C~~~   80 (182)
T 1rhf_A           13 TVSQGQPVKLNCSVEGMEE---PDIQWVKDGAVVQN----LDQLYIPVSEQHWIGFLSLKSVERSDAG--RYWCQVE   80 (182)
T ss_dssp             EEETTCCEEEEEEEESCSS---CCEEEEETTEECCS----SEEEEEEEETTEEEEEEEESSCCGGGCE--EEEEEES
T ss_pred             EEeCCCcEEEEEEEeCCCC---CeEEEEECCeecCC----CCceEEEecCCCceEEEEEeecCcccCe--EEEEEEE
Confidence            5678999999999864222   24689999877654    34444433     367999998887653  4555554

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=95.44  E-value=0.0076  Score=37.72  Aligned_cols=66  Identities=14%  Similarity=0.171  Sum_probs=42.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----e-eeecC----cCCCceEEEcc---CccEEEEeEeeecCCccee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----V-NIYLN----TDTGGKYVVLS---SGDLYVQIRLSITGNLSVK   84 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~-~I~p~----~~~dgKY~vlp---sGeL~Ir~v~~~~~n~~~~   84 (98)
                      .|..|.+|+|.|.+......   ...|.+.+     . .++..    ....+||.+..   ++.|.|++++.+|.  ..=
T Consensus        14 ~v~~G~~v~L~C~~~~~~~~---~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~Ds--G~Y   88 (109)
T 2q20_A           14 SASVGDRVTITCQASQDISN---YLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDI--ATY   88 (109)
T ss_dssp             EECTTCCEEEEEEESSCCTT---CEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC--EEE
T ss_pred             EecCCCcEEEEEeeccCCCC---cEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEeccCCEEEEEECCCChhhC--EEE
Confidence            45689999999998654422   35798763     1 22221    12367998864   34699999998774  444


Q ss_pred             eeee
Q psy5692          85 KMKV   88 (98)
Q Consensus        85 ~~~~   88 (98)
                      -|.+
T Consensus        89 ~C~~   92 (109)
T 2q20_A           89 YCQQ   92 (109)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4544

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=95.44  E-value=0.0065  Score=41.89  Aligned_cols=69  Identities=16%  Similarity=0.224  Sum_probs=43.7

Q ss_pred             ceeecCeEEEEccCCCCccc--eeEEeEEccCC--e----eeec----CcCCCceEEEccCc---cEEEEeEeeecCCcc
Q psy5692          18 NVILGNTAVLRCQIPSYMSE--YIIVTSWIQDD--V----NIYL----NTDTGGKYVVLSSG---DLYVQIRLSITGNLS   82 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d--~V~V~SW~~Dd--~----~I~p----~~~~dgKY~vlpsG---eL~Ir~v~~~~~n~~   82 (98)
                      .|..|.+|+|.|.+...-..  --....|.++.  .    .+|.    .....+||.+..+|   .|.|++++.+|.  .
T Consensus        49 ~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~--G  126 (254)
T 2c1o_A           49 SVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDL--G  126 (254)
T ss_dssp             EECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC--S
T ss_pred             EecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccC--E
Confidence            56789999999998644310  01347898642  1    1221    12235899988655   799999998886  3


Q ss_pred             eeeeee
Q psy5692          83 VKKMKV   88 (98)
Q Consensus        83 ~~~~~~   88 (98)
                      .-.|.+
T Consensus       127 ~Y~C~a  132 (254)
T 2c1o_A          127 IYYCVQ  132 (254)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            444444

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=95.43  E-value=0.013  Score=38.54  Aligned_cols=32  Identities=22%  Similarity=0.439  Sum_probs=24.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI   51 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I   51 (98)
                      .|..|.++.|.|.+...-...  ...|.+++..+
T Consensus        18 ~v~~G~~v~L~C~~~~~p~~~--~~~W~~~~~~~   49 (175)
T 1fnl_A           18 SVLEKDSVTLKCQGAYSPEDN--STQWFHNESLI   49 (175)
T ss_dssp             EEETTCCEEEEEECCCBTTBC--CCEEEETTEEE
T ss_pred             eeeCCCcEEEEeeCCCCCCCc--ceEEEECCEEc
Confidence            578999999999987654332  56899988555

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=95.42  E-value=0.01  Score=41.29  Aligned_cols=68  Identities=10%  Similarity=0.148  Sum_probs=41.7

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-e---------cCcCCCceEEEccCc-----cEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-Y---------LNTDTGGKYVVLSSG-----DLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~---------p~~~~dgKY~vlpsG-----eL~Ir~v~~~   77 (98)
                      .|..|.+++|.|.+..+-.. .....|.+..     ..| +         ......+||.+..++     .|.|++++.+
T Consensus        17 ~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   95 (256)
T 3juy_B           17 VKKPGASVKVSCQASGYRFS-HFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSA   95 (256)
T ss_dssp             EECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eecCCCeEEEEEEeeccccc-CceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEEEEEECCCCcc
Confidence            56789999999998653111 1235787532     111 1         112245899998543     3999999988


Q ss_pred             cCCcceeeeee
Q psy5692          78 TGNLSVKKMKV   88 (98)
Q Consensus        78 ~~n~~~~~~~~   88 (98)
                      |.  ..-.|.+
T Consensus        96 Ds--G~Y~C~~  104 (256)
T 3juy_B           96 DT--AVYYCAR  104 (256)
T ss_dssp             GC--EEEEEEE
T ss_pred             cC--EEEEEeE
Confidence            74  4444544

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=95.41  E-value=0.0051  Score=39.22  Aligned_cols=65  Identities=17%  Similarity=0.241  Sum_probs=41.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC--e---eeecCcCCCceEEEc-----cCccEEEEeEeeecCCcceeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NIYLNTDTGGKYVVL-----SSGDLYVQIRLSITGNLSVKKMK   87 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd--~---~I~p~~~~dgKY~vl-----psGeL~Ir~v~~~~~n~~~~~~~   87 (98)
                      .|..|.+|.|.|.+.+..... ....|.++.  .   .++   ..++||.+.     .+..|.|++++.+|.  +.=-|.
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~-~~v~W~r~~~g~~~~~~~---~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds--G~Y~C~   84 (113)
T 1sq2_N           11 TKETGESLTINCVLRDASYAL-GSTCWYRKKSGEGNEESI---SKGGRYVETVNSGSKSFSLRINDLTVEDG--GTYRCG   84 (113)
T ss_dssp             EECTTCCEEEEEEECSCSSCC-CCEEEEEEETTSCCCEEC---CCBTTEEEEEETTTTEEEEEECSCCGGGC--EEEEEE
T ss_pred             EEecCCCEEEEEEECCCcCCC-CEEEEEEeCCCCCceEeE---EeCCCEEEEEeCCCCEEEEEECCCChhhC--EEEEEE
Confidence            345899999999986443221 346798863  1   122   135799774     244699999998764  444454


Q ss_pred             e
Q psy5692          88 V   88 (98)
Q Consensus        88 ~   88 (98)
                      +
T Consensus        85 ~   85 (113)
T 1sq2_N           85 L   85 (113)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=95.40  E-value=0.011  Score=42.73  Aligned_cols=65  Identities=15%  Similarity=0.090  Sum_probs=43.9

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEcc-CCeeeecCcCCCceEEEccCccEEEEeEeeecC----Ccceeeeeeh
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQ-DDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG----NLSVKKMKVE   89 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~-Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~----n~~~~~~~~~   89 (98)
                      +..|.+++|.|.+...-.   ...+|.+ |...|.+   ..+.+.+.++|.|.|.+++.+|.    ++..-.|...
T Consensus        16 ~~~G~~v~l~C~~~g~p~---p~v~W~k~~g~~~~~---~~~~~~~~~~~~L~i~~~~~~d~~~~~d~G~Y~C~a~   85 (388)
T 2v5m_A           16 FSNSTGAEIECKASGNPM---PEIIWIRSDGTAVGD---VPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLAR   85 (388)
T ss_dssp             EETTTCEEEECEEEEESC---CEEEEEETTSCBCCC---BTTTBEECSTTEEEECCCCGGGCCHHHHEEEEEEEEE
T ss_pred             EEcCccEEEEEECCCCCC---CEEEEEcCCCCcccc---CCCceEEcCCceEEecccChhhccccccCceEEEEEE
Confidence            447999999999743221   2568999 5565533   24566778999999999998872    2345555543

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.40  E-value=0.0088  Score=37.46  Aligned_cols=54  Identities=9%  Similarity=0.073  Sum_probs=36.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc---CccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS---SGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp---sGeL~Ir~v~~~~~   79 (98)
                      .+..|.++.|.|.+...-.   -...|.+++..|.     ++++.+..   ++.|.|++++.+|.
T Consensus        35 ~v~~G~~~~l~C~~~g~P~---p~i~W~k~g~~l~-----~~~~~~~~~~~~~~L~i~~~~~~D~   91 (118)
T 2e7c_A           35 IRKVGEQLNLVVPFQGKPR---PQVVWTKGGAPLD-----TSRVHVRTSDFDTVFFVRQAARSDS   91 (118)
T ss_dssp             EEESSSCEEEEEEEEEESC---CEEEEEETTEECC-----CSSCEEEECSSEEEEEESSCCTTTC
T ss_pred             EEECCCEEEEEEEEccCCC---CEEEEEECCEECC-----CCcEEEEECCCeEEEEECCCChhcC
Confidence            5678999999998743222   2468999997662     24555543   23399999888774

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=95.40  E-value=0.008  Score=41.25  Aligned_cols=66  Identities=12%  Similarity=0.132  Sum_probs=41.0

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccC----C--eeeecC---------cCCCceEEEcc----CccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQD----D--VNIYLN---------TDTGGKYVVLS----SGDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~D----d--~~I~p~---------~~~dgKY~vlp----sGeL~Ir~v~~~~   78 (98)
                      .|..|.+|+|.|.+...-   .....|++.    .  ..++..         ....+||.+..    ++.|.|++++.+|
T Consensus        12 ~v~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D   88 (246)
T 4dzb_B           12 ISKSGTSVKIECRSLDFQ---ATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPED   88 (246)
T ss_dssp             EEETTSCEEEEEEESSSC---CCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECSCCGGG
T ss_pred             EEeCCCcEEEEeEecCCC---ceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECCCCHHH
Confidence            466899999999876552   234578872    1  111111         11238999875    3369999999887


Q ss_pred             CCcceeeeee
Q psy5692          79 GNLSVKKMKV   88 (98)
Q Consensus        79 ~n~~~~~~~~   88 (98)
                      .  ..-.|.+
T Consensus        89 ~--G~Y~C~~   96 (246)
T 4dzb_B           89 S--SFYICSA   96 (246)
T ss_dssp             C--EEEEEEE
T ss_pred             C--EEEEEEE
Confidence            4  3444444

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=95.40  E-value=0.025  Score=43.53  Aligned_cols=62  Identities=15%  Similarity=0.195  Sum_probs=43.7

Q ss_pred             ceeecCeEEEEccCCCCccceeEEe-EEcc--CCe--eeecC-----cCCCceEEEc---cCcc--EEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVT-SWIQ--DDV--NIYLN-----TDTGGKYVVL---SSGD--LYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~-SW~~--Dd~--~I~p~-----~~~dgKY~vl---psGe--L~Ir~v~~~~~   79 (98)
                      .+..|.++.|.|.+...-...+..| +|.+  ++.  .+..+     ...++|+.+.   .+|.  |.|.+++.+|.
T Consensus       342 ~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~  418 (585)
T 2ocw_A          342 KGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDA  418 (585)
T ss_pred             EEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhC
Confidence            4678999999999976655555544 8998  664  44332     2246788887   4576  99999887764

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=95.39  E-value=0.007  Score=41.90  Aligned_cols=61  Identities=15%  Similarity=0.232  Sum_probs=40.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC--e---e---eecC-------cCCCceEEEccCcc-----EEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---N---IYLN-------TDTGGKYVVLSSGD-----LYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd--~---~---I~p~-------~~~dgKY~vlpsGe-----L~Ir~v~~~   77 (98)
                      .|..|.++.|.|.+..+-.+ .....|.+++  .   .   ++..       ....+||.+..++.     |.|++++.+
T Consensus       145 ~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~  223 (256)
T 3ux9_B          145 LVQPGGSLRLSCAASGFTFS-SYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAE  223 (256)
T ss_dssp             EECTTCCEEEEEEEESSCGG-GSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EEcCCCeEEEEEEEeCCccc-ccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChh
Confidence            56789999999998644322 2356888752  1   1   1111       12346999876554     999999988


Q ss_pred             cC
Q psy5692          78 TG   79 (98)
Q Consensus        78 ~~   79 (98)
                      |.
T Consensus       224 Ds  225 (256)
T 3ux9_B          224 DT  225 (256)
T ss_dssp             GC
T ss_pred             hC
Confidence            75

>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*

Probab=95.39  E-value=0.034  Score=35.11  Aligned_cols=67  Identities=22%  Similarity=0.284  Sum_probs=41.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-ecCcC-------C-CceEEEccCc--cEEEEeEeeecCCc
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLNTD-------T-GGKYVVLSSG--DLYVQIRLSITGNL   81 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~p~~~-------~-dgKY~vlpsG--eL~Ir~v~~~~~n~   81 (98)
                      .|..|.+|.|.|.+.+.-.   ....|.+..     ..| +-...       . ++||.+..++  -|.|++++.+|.  
T Consensus        12 ~v~~G~~vtL~C~~~~~~~---~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~L~I~~~~~~Ds--   86 (112)
T 1fo0_B           12 LVPRGQAVNLRCILKNSQY---PWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQG--   86 (112)
T ss_dssp             ECCTTCCEEEEEEESCTTC---CEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESCCSC--
T ss_pred             EEecCCcEEEEEEeCCCCC---ceEEEEEECCCCCCEEEEEEeCCCceecCccccCCEEEEcCCCCeEEEcCCCHhHC--
Confidence            3458999999999754422   236898743     122 22111       1 2888886322  699999998764  


Q ss_pred             ceeeeeeh
Q psy5692          82 SVKKMKVE   89 (98)
Q Consensus        82 ~~~~~~~~   89 (98)
                      +.=-|.+.
T Consensus        87 g~Y~C~~~   94 (112)
T 1fo0_B           87 RTLYCTCS   94 (112)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            45555543

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=95.39  E-value=0.0097  Score=38.42  Aligned_cols=63  Identities=16%  Similarity=0.268  Sum_probs=44.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc-CccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS-SGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp-sGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .+..|.++.|.|.+..+-..   ..+|.+++..|.+    +++|.+.. ++.|.|.+++.+|.  ..-.|.+.
T Consensus       109 ~~~~g~~v~l~C~~~g~p~~---~v~W~~~g~~~~~----~~~~~~~~~~~~L~i~~~~~~d~--G~Y~C~a~  172 (189)
T 2v5t_A          109 TAERGEEMTFSCRASGSPEP---AISWFRNGKLIEE----NEKYILKGSNTELTVRNIINSDG--GPYVCRAT  172 (189)
T ss_dssp             ETTSCCCEEEECEEEEESCC---EEEEEETTEECCC----SSSEEEETTTTEEEECSCCGGGC--EEEEEEEE
T ss_pred             cccCCCcEEEEEEEccCCCC---eEEEEECCEECcC----CCcEEEecCCCEEEEcCCChhhC--eeEEEEEE
Confidence            45679999999998543222   3689999876643    46777764 67899999888773  34556543

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=95.37  E-value=0.0022  Score=44.46  Aligned_cols=64  Identities=11%  Similarity=0.062  Sum_probs=44.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-eeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .+..|.++.|.|.+..  ...-...+|.+++ ..+ +   .+.+|.+.++|.|.|++++.+|.-  .-.|.+.
T Consensus       100 ~v~~g~~v~l~C~~~~--~~~~~~v~W~~~~~~~~-~---~~~~~~~~~~~~L~i~~~~~~d~G--~Y~C~a~  164 (292)
T 4dkd_C          100 VVFEDQDALLPCLLTD--PVLEAGVSLVRVRGRPL-M---RHTNYSFSPWHGFTIHRAKFIQSQ--DYQCSAL  164 (292)
T ss_dssp             EEETTSCEECCEEESS--GGGGSSEEEEEGGGCCC-C---SSCCEECCSSSCCEETTCCGGGCS--EEEEEEC
T ss_pred             EEcCCCcEEEeeeCCC--CCcceeEEEEecCCCcc-c---cCCcccccCCceEEECCCCHHHCe--EEEEEEE
Confidence            5778999999999864  1221356798886 443 3   367888889999999998877643  3444443

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=95.36  E-value=0.006  Score=40.81  Aligned_cols=61  Identities=15%  Similarity=0.145  Sum_probs=39.5

Q ss_pred             ceeecCeEEEEccCCCCcc-ceeEEeEEccCC--ee----eec----CcCCCceEEEccCc---cEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMS-EYIIVTSWIQDD--VN----IYL----NTDTGGKYVVLSSG---DLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~-d~V~V~SW~~Dd--~~----I~p----~~~~dgKY~vlpsG---eL~Ir~v~~~~~   79 (98)
                      .|..|.+|+|.|.+...-. +-. ..+|.+++  ..    +|.    .....+||.+..+|   .|.|++++.+|.
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   85 (212)
T 1q0x_L           11 TTSPGETVTLTCRSSTGAVTTSN-YANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDE   85 (212)
T ss_dssp             EECTTCCEEEEEEESSSCCCGGG-CCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             eecCCCCEEEEEEecccccCCCC-eEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCC
Confidence            4668999999999754321 011 37898863  11    111    11235799887644   799999998875

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=95.34  E-value=0.0076  Score=43.57  Aligned_cols=66  Identities=17%  Similarity=0.126  Sum_probs=44.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .|..|.++.|.|.+...  .-.....|.+++..|.++.  ........+|.|.|.+++..|.-  .-.|.+.
T Consensus        17 ~v~~G~~v~l~C~~~~~--~p~~~v~W~k~g~~~~~~~--~~~~~~~~~~~L~i~~~~~~D~G--~Y~C~a~   82 (395)
T 1bih_A           17 LFRENNPTVLECIIEGN--DQGVKYSWKKDGKSYNWQE--HNAALRKDEGSLVFLRPQASDEG--HYQCFAE   82 (395)
T ss_dssp             EEETTSCEEECCCEESC--CSSCEEEEEESSSBCCTTT--TTEEECTTSCCEEESSCCGGGCE--EEEEEEE
T ss_pred             EEeCCCEEEEEEEEecC--CCCceEEEEECCcCccccc--ceEEEecCCceEEEecCCCCCCc--EEEEEEE
Confidence            55689999999998651  1234568999997665432  13334457899999998777653  4555543

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=95.31  E-value=0.014  Score=44.92  Aligned_cols=69  Identities=13%  Similarity=0.213  Sum_probs=45.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCe-----eeecC-----cCCCceEEEcc---Cc--cEEEEeEeeecCCcc
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDV-----NIYLN-----TDTGGKYVVLS---SG--DLYVQIRLSITGNLS   82 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~-----~I~p~-----~~~dgKY~vlp---sG--eL~Ir~v~~~~~n~~   82 (98)
                      .|..|.++.|.|.++..-..-.....|.+++.     .|.++     .+.+||+.+..   +|  .|.|.+++.+|.  .
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~--G   88 (585)
T 2ocw_A           11 NSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDS--G   88 (585)
T ss_pred             EEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCcccC--E
Confidence            56789999999998765432233578999973     23221     22467888863   44  499999988775  3


Q ss_pred             eeeeee
Q psy5692          83 VKKMKV   88 (98)
Q Consensus        83 ~~~~~~   88 (98)
                      .-.|.+
T Consensus        89 ~Y~C~~   94 (585)
T 2ocw_A           89 RYKCGL   94 (585)
T ss_pred             EEEEEc
Confidence            455554

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=95.30  E-value=0.0058  Score=42.52  Aligned_cols=55  Identities=16%  Similarity=0.261  Sum_probs=38.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCc--cEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG--DLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG--eL~Ir~v~~~~~   79 (98)
                      .|..|.++.|.|.+...- . .....|++|+..|.+    +++|.. .+|  .|.|++++.+|.
T Consensus       127 ~v~~g~~v~l~C~v~g~~-P-~p~i~W~k~g~~l~~----~~~~~~-~~~~~~L~I~~v~~~D~  183 (207)
T 3rbs_A          127 EVTGECNVLLKCKVANIK-K-ETHIVWYKDEREISV----DEKHDF-KDGICTLLITEFSKKDA  183 (207)
T ss_dssp             EEETTTEEEEEEEEESCC-T-TCEEEEEETTEEECC----CCCCCC-SSEEEEEEETTCCGGGC
T ss_pred             EEcCCCcEEEEEEEeCCC-C-CCEEEEEECCEECCC----CCceEc-CCCEEEEEECCCCcccC
Confidence            677999999999964320 0 224689999988765    345533 333  599999988774

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=95.30  E-value=0.013  Score=42.43  Aligned_cols=58  Identities=16%  Similarity=0.406  Sum_probs=40.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEc-cCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL-SSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vl-psGeL~Ir~v~~~~~   79 (98)
                      .+..|.++.|.|.++..-..  ....|.+++..+..  ..++++.+. .+|.|.|.+++..|.
T Consensus       112 ~v~~G~~v~l~C~~~~~~p~--~~i~W~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~d~  170 (382)
T 1cs6_A          112 KITEGWGVMFTCSPPPHYPA--LSYRWLLNEFPNFI--PADGRRFVSQTTGNLYIAKTEASDL  170 (382)
T ss_dssp             EEETTSCEEECCCCCSEESC--CEEEEEESSTTCBC--CCCSSEEECTTTCCEEESSCCGGGC
T ss_pred             EEecCCcEEEEeCCCCCCCC--cEEEEEECCCcccc--ccCceEEEecCceEEEEEeeCcccC
Confidence            46789999999996543222  34689999844321  135666554 579999999887764

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=95.29  E-value=0.0049  Score=41.31  Aligned_cols=55  Identities=9%  Similarity=-0.064  Sum_probs=33.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~   78 (98)
                      .|..|.+++|.|..+...    ....|.+++..+...  ..+......+|.|.|++++..|
T Consensus        14 ~v~~G~~v~L~C~~~~~~----~~~~w~k~g~~~~~~--~~~~~~~~~~~~L~I~~v~~~D   68 (188)
T 1oll_A           14 MVPKEKQVTICCQGNYGA----VEYQLHFEGSLFAVD--RPKPPERINKVKFYIPDMNSRM   68 (188)
T ss_dssp             EEETTCCEEEEEECCTTC----CEEEEEETTEEEEEE--CCSSCTTCCEEEEEESSCCGGG
T ss_pred             cCCCCCCEEEEEecCCCC----CEEEEEECCCccccc--ccccCCCcceeEEEeCcCCccc
Confidence            578999999999986432    356899998554321  0111112245566666665544

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=95.29  E-value=0.004  Score=41.73  Aligned_cols=55  Identities=11%  Similarity=0.074  Sum_probs=33.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~   78 (98)
                      .|..|.+++|.|.+.....    ...|.+++..+.+...  .......+|.|.|++++..|
T Consensus        15 ~v~~G~~v~L~C~~~~~~~----~~~W~k~g~~~~~~~~--~~~~~~~~~~L~i~~v~~~D   69 (196)
T 2d3v_A           15 VISRGNSVTIRCQGTLEAQ----EYRLVKEGSPEPWDTQ--NPLEPKNKARFSIPSMTEHH   69 (196)
T ss_dssp             EEETTCCEEEEEECCTTCC----EEEEEETTCSSCSEEE--CCCSSTTEEEEEESSCCGGG
T ss_pred             cccCCCeEEEEEeCCCCCc----EEEEEECCCCCCcccc--cccCCccccEEEeccCChhH
Confidence            6779999999999865432    6789999854432100  00111245667776666554

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=95.28  E-value=0.013  Score=39.03  Aligned_cols=59  Identities=17%  Similarity=0.270  Sum_probs=37.7

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccC---C--eee-ecC----cCCCceEEEcc---CccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQD---D--VNI-YLN----TDTGGKYVVLS---SGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~D---d--~~I-~p~----~~~dgKY~vlp---sGeL~Ir~v~~~~~   79 (98)
                      .|..|.+++|.|.+...-   .....|.+.   .  ..+ +-.    ....+||.+..   ++.|.|++++.+|.
T Consensus        11 ~v~~G~~v~L~C~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   82 (213)
T 3mj8_L           11 SVALGQKATITCSGDKLS---DVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDE   82 (213)
T ss_dssp             EEETTSCEEEEEECSSTT---TSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeCCCCEEEEEEcCCCC---CceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhC
Confidence            456899999999986322   235678772   2  222 211    11457888653   45699999988875

>2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A

Probab=95.24  E-value=0.013  Score=37.09  Aligned_cols=77  Identities=21%  Similarity=0.215  Sum_probs=45.8

Q ss_pred             cceeeeceEEEEeeeeceeecCeEEEEccCCCCccceeEEeEEccCC------eeeecCc--------CCCceEEEccC-
Q psy5692           2 LPVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIYLNT--------DTGGKYVVLSS-   66 (98)
Q Consensus         2 rAVV~Q~Yev~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd------~~I~p~~--------~~dgKY~vlps-   66 (98)
                      -++|.|+=.  +    .|..|.++.|.|.+.+....  ....|.+..      ..++-..        ...+||.+..+ 
T Consensus         2 ~~~v~qp~~--~----~~~~G~~v~L~C~~~~~~~~--~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~   73 (115)
T 2otu_A            2 QLVLTQSSS--A----SFSLGASAKLTCTLSSQHST--YTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSG   73 (115)
T ss_dssp             CCCEEECCC--E----ECCTTCCEEEEEEECGGGTT--CCEEEEEECTTSCCEEEEEECTTSCEEECTTCCTTEEEEEET
T ss_pred             CCeEEcCCC--E----EECCCCCEEEEEEecCCCCC--eEEEEEEeCCCCCceEEEEEecCCceecCcccCCCEEEEccC
Confidence            455666421  2    45589999999997643212  236787632      2233111        12578988653 


Q ss_pred             --ccEEEEeEeeecCCcceeeeee
Q psy5692          67 --GDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        67 --GeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                        .-|.|++++.+|.  +.=-|.+
T Consensus        74 ~~~~L~I~~~~~~Ds--g~Y~C~~   95 (115)
T 2otu_A           74 ADRYLSISNIQPEDE--AIYICGV   95 (115)
T ss_dssp             TEEEEEESSCCGGGC--EEEEEEE
T ss_pred             CEEEEEECCCChhHC--EEEEEEE
Confidence              3599999988774  4444544

>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*

Probab=94.24  E-value=0.0032  Score=39.70  Aligned_cols=67  Identities=16%  Similarity=0.179  Sum_probs=43.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCe------eeecC----cCCCceEEEcc-----CccEEEEeEeeecCCcc
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDV------NIYLN----TDTGGKYVVLS-----SGDLYVQIRLSITGNLS   82 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~------~I~p~----~~~dgKY~vlp-----sGeL~Ir~v~~~~~n~~   82 (98)
                      .|..|.+|+|.|.+...-   -....|.+.+.      .++-.    ...+|||.+..     ++.|.|++++.+|.  +
T Consensus        10 ~v~~G~~v~L~C~~~~~~---~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~Ds--G   84 (110)
T 1u3h_A           10 TVWEGETAILNCSYENSA---FDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDS--A   84 (110)
Confidence            466899999999986432   23578988641      12211    12468998864     35799999998874  3


Q ss_pred             eeeeeeh
Q psy5692          83 VKKMKVE   89 (98)
Q Consensus        83 ~~~~~~~   89 (98)
                      .=.|.+.
T Consensus        85 ~Y~C~~~   91 (110)
T 1u3h_A           85 TYFCAAS   91 (110)
Confidence            4445443

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=95.23  E-value=0.0076  Score=40.54  Aligned_cols=68  Identities=18%  Similarity=0.097  Sum_probs=42.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----e-eeecC----cCCCceEEEccCc---cEEEEeEeeecCCccee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----V-NIYLN----TDTGGKYVVLSSG---DLYVQIRLSITGNLSVK   84 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~-~I~p~----~~~dgKY~vlpsG---eL~Ir~v~~~~~n~~~~   84 (98)
                      .|..|.+++|.|.+.+.-.. ....+|.+++     . .+|..    ....+||.+..+|   .|.|++++.+|.  ..-
T Consensus        11 ~v~~G~~v~L~C~v~~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~--G~Y   87 (216)
T 2xzc_L           11 SAAPGQKVTISCSGSSSNIG-NNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDE--ADY   87 (216)
T ss_dssp             EECTTCCEEEEEECCTTTGG-GSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGC--EEE
T ss_pred             EecCCCeEEEEEEeecCCCC-CCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccC--EEE
Confidence            45689999999995322211 1247898743     1 12211    1235799887655   799999998875  344


Q ss_pred             eeee
Q psy5692          85 KMKV   88 (98)
Q Consensus        85 ~~~~   88 (98)
                      .|.+
T Consensus        88 ~C~~   91 (216)
T 2xzc_L           88 YCGT   91 (216)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4444

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=95.22  E-value=0.0065  Score=42.68  Aligned_cols=58  Identities=17%  Similarity=0.134  Sum_probs=37.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eeeecCcC---------CCceEEEcc----CccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYLNTD---------TGGKYVVLS----SGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I~p~~~---------~dgKY~vlp----sGeL~Ir~v~~~~~   79 (98)
                      .|..|.+|+|.|.+..   .. ....|++..     ..+....+         .++||.+..    ++.|.|++++.+|.
T Consensus        38 ~v~~G~~v~L~C~~~~---~~-~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~  113 (270)
T 3qib_D           38 VKGQGQKAKMRCIPEK---GH-PVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDS  113 (270)
T ss_dssp             EEETTSCEEEEEECCT---TC-CEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGC
T ss_pred             EEcCCCCEEEEEEecC---CC-ceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHC
Confidence            5678999999999743   22 357898722     11211110         012888864    55799999998874

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=95.22  E-value=0.0055  Score=42.38  Aligned_cols=65  Identities=15%  Similarity=0.327  Sum_probs=42.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eeee-cC--cCCCceEEEccC------ccEEEEeEeeecCCcce
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIY-LN--TDTGGKYVVLSS------GDLYVQIRLSITGNLSV   83 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I~-p~--~~~dgKY~vlps------GeL~Ir~v~~~~~n~~~   83 (98)
                      .|..|.+|+|.|.+.... .   ...|++..     ..|+ ..  ....+||.+..+      +.|.|++++.+|.  ..
T Consensus        12 ~v~~G~~v~L~C~~~~~~-~---~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~--G~   85 (207)
T 1ypz_E           12 SLHEGTDSALRCNFTTTM-R---SVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDS--GT   85 (207)
T ss_dssp             EEETTCCEEEEEEESSCC-S---EEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGC--EE
T ss_pred             EEccCCcEEEEEEEeCCC-e---EEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHC--EE
Confidence            456899999999986543 2   48998743     2221 10  113589998754      5799999998874  44


Q ss_pred             eeeee
Q psy5692          84 KKMKV   88 (98)
Q Consensus        84 ~~~~~   88 (98)
                      --|.+
T Consensus        86 Y~C~~   90 (207)
T 1ypz_E           86 YFCAA   90 (207)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44444

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=95.19  E-value=0.016  Score=36.19  Aligned_cols=68  Identities=16%  Similarity=0.182  Sum_probs=43.0

Q ss_pred             ceeecCeEEEEccCCCCcc--ceeEEeEEccCC-----e-eeecC----cCCCceEEEccCc---cEEEEeEeeecCCcc
Q psy5692          18 NVILGNTAVLRCQIPSYMS--EYIIVTSWIQDD-----V-NIYLN----TDTGGKYVVLSSG---DLYVQIRLSITGNLS   82 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~--d~V~V~SW~~Dd-----~-~I~p~----~~~dgKY~vlpsG---eL~Ir~v~~~~~n~~   82 (98)
                      .|..|.+++|.|.+.....  + -....|.+..     . .++..    ....+||.+.+++   .|.|++++.+|.  +
T Consensus        12 ~~~~G~~v~L~C~~~~~~~~~~-~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~Ds--G   88 (111)
T 1j05_L           12 AVSLGQRATMSCRAGESVDIFG-VGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDV--A   88 (111)
T ss_dssp             ECCTTSCEEEEEEESSCCEETT-EECEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC--E
T ss_pred             EEeCCCCEEEEeecCCCcccCC-CceEEEEEeCCCCCCEEEEEecCcCCCCCCCcEEEEccCCEEEEEECCCCcccC--E
Confidence            4558999999999865441  1 2347898753     1 23321    1235799987543   699999998774  3


Q ss_pred             eeeeee
Q psy5692          83 VKKMKV   88 (98)
Q Consensus        83 ~~~~~~   88 (98)
                      .=-|.+
T Consensus        89 ~Y~C~~   94 (111)
T 1j05_L           89 TYYCQQ   94 (111)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            444444

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=95.18  E-value=0.0094  Score=41.24  Aligned_cols=68  Identities=12%  Similarity=0.160  Sum_probs=42.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-ecC---------cCCCceEEEccCcc-----EEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN---------TDTGGKYVVLSSGD-----LYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~p~---------~~~dgKY~vlpsGe-----L~Ir~v~~~   77 (98)
                      .|..|.+++|.|.+..+-... ....|++..     ..| +-.         ....+||.+..++.     |.|++++.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~-~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   89 (230)
T 3n9g_H           11 VRKPGASTKVSCKASGYTFTH-YYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSLRSE   89 (230)
T ss_dssp             EECTTCCEEEEEEEESSCGGG-SCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EEcCCCCEEEEEEeecceecC-cEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCChh
Confidence            466899999999986432222 346787632     122 111         12358999986655     999999988


Q ss_pred             cCCcceeeeee
Q psy5692          78 TGNLSVKKMKV   88 (98)
Q Consensus        78 ~~n~~~~~~~~   88 (98)
                      |.  ..--|.+
T Consensus        90 Ds--G~Y~C~~   98 (230)
T 3n9g_H           90 DT--AVYYCAR   98 (230)
T ss_dssp             GC--EEEEEEE
T ss_pred             hC--EEEEEEE
Confidence            74  4444444

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=95.16  E-value=0.0041  Score=41.70  Aligned_cols=55  Identities=9%  Similarity=-0.098  Sum_probs=28.7

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc----CccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS----SGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp----sGeL~Ir~v~~~~~   79 (98)
                      .|..|.++.|.|.+...-    ....|.+++..+.+.   ......++    .+.|.|++++.+|+
T Consensus       110 ~v~~G~~v~L~C~~~~~p----~~~~W~k~g~~~~~~---~~~~~~~~~~~~~~~L~I~~v~~~D~  168 (196)
T 2d3v_A          110 VVTSGENVTLQCGSRLRF----DRFILTEEGDHKLSW---TLDSQLTPSGQFQALFPVGPVTPSHR  168 (196)
T ss_dssp             -------CEEEEEESSCC----SEEEEEEC---CCEE---EEECEECTTSCEEEEEECCCCBTTBC
T ss_pred             cccCCCcEEEEEEcCCCC----CEEEEEccCCccccc---ccccccccCCCceeEEEeeecCcccC
Confidence            578999999999986543    357899998665431   01112333    26888888887764

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=95.13  E-value=0.0036  Score=42.27  Aligned_cols=56  Identities=11%  Similarity=-0.072  Sum_probs=34.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEE-ccCccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV-LSSGDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~v-lpsGeL~Ir~v~~~~   78 (98)
                      .|..|.+++|.|..+.   . .....|.+++..+.+.. ...++.. ..+|.|.|.+++..|
T Consensus        18 ~v~~G~~v~L~C~~~~---~-~~~~~w~k~g~~~~~~~-~~~~~~~~~~~~~l~I~~v~~~D   74 (201)
T 1nkr_A           18 LVKSEETVILQCWSDV---M-FEHFLLHREGMFNDTLR-LIGEHHDGVSKANFSISRMTQDL   74 (201)
T ss_dssp             EEETTCCEEEEEEESS---C-CSEEEEEEESSSCEEEE-EECEEETTEEEEEEEESSCCGGG
T ss_pred             ccCCCCcEEEEEeccC---C-CCEEEEEECCCcCCcce-eeeecCCCCceEEEEeccCCccc
Confidence            5779999999999753   1 23578999885443311 0111111 245778887777665

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=95.13  E-value=0.0066  Score=36.62  Aligned_cols=60  Identities=12%  Similarity=0.026  Sum_probs=39.4

Q ss_pred             ceeecCeEEEEccCCC-CccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPS-YMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs-~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+..|.++.|.|.+.+ .-   .....|.+++....+    +  .....+|.|.|++++.+|.  ..-.|..
T Consensus        21 ~v~~G~~v~l~C~~~~~~p---~~~v~W~k~~~~~~~----~--~~~~~~~~L~i~~v~~~D~--G~Y~C~a   81 (98)
T 1gl4_B           21 SVRPGADVTFICTAKSKSP---AYTLVWTRLHNGKLP----S--RAMDFNGILTIRNVQPSDA--GTYVCTG   81 (98)
T ss_dssp             EECTTCCEEEEEEEEESSS---CCEEEEEEGGGBCCC----T--TEEEETTEEEECSCCGGGC--EEEEEEE
T ss_pred             EEecCCCEEEEEeCCCCCC---CcEEEEEeCCCCCCC----c--eeecCCCEEEEeCCChhhC--EEEEEEe
Confidence            5679999999999752 22   235689988633323    1  2344688999999988773  3444443

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=95.12  E-value=0.0097  Score=43.30  Aligned_cols=66  Identities=14%  Similarity=0.029  Sum_probs=43.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCee-eec---------CcCCCceEEEcc------CccEEEEeEeeecCCc
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVN-IYL---------NTDTGGKYVVLS------SGDLYVQIRLSITGNL   81 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~-I~p---------~~~~dgKY~vlp------sGeL~Ir~v~~~~~n~   81 (98)
                      .|..|.++.|.|.++..   -.....|.+++.. +..         .....+|+.+..      ++.|.|++++.+|.  
T Consensus         5 ~~~~G~~v~L~C~~~~~---p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~--   79 (363)
T 1wio_A            5 LGKKGDTVELTCTASQK---KSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDS--   79 (363)
T ss_dssp             EEETTSCEEECCCCTTC---SSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGC--
T ss_pred             EEeCCCeEEEEEEecCC---CceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHC--
Confidence            46689999999997532   2334689999832 311         123467888764      66799999988774  


Q ss_pred             ceeeeee
Q psy5692          82 SVKKMKV   88 (98)
Q Consensus        82 ~~~~~~~   88 (98)
                      ..-.|.+
T Consensus        80 G~Y~C~~   86 (363)
T 1wio_A           80 DTYICEV   86 (363)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            3445544

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=95.11  E-value=0.015  Score=34.78  Aligned_cols=32  Identities=19%  Similarity=0.432  Sum_probs=23.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIY   52 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~   52 (98)
                      .+..|.++.|.|.+..+-..   ...|.+++..+.
T Consensus        14 ~v~~G~~~~l~C~~~g~p~p---~i~W~~~~~~~~   45 (91)
T 3bfo_A           14 KLMPGSTLVLQCVAVGSPIP---HYQWFKNELPLT   45 (91)
T ss_dssp             EECTTSCEEEECEEECSSCC---EEEEEETTEECT
T ss_pred             EecCCCcEEEEEEeccCCCC---EEEEEcCCeeCC
Confidence            57789999999997543332   568999986653

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=95.10  E-value=0.0045  Score=38.70  Aligned_cols=61  Identities=13%  Similarity=0.071  Sum_probs=35.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecC--cCCCce-EE----EccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN--TDTGGK-YV----VLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~--~~~dgK-Y~----vlpsGeL~Ir~v~~~~~   79 (98)
                      .+..|.++.|.|.+...-...+ -.+|.+++..+...  ...+.. +.    ...++.|.|.+++.+|.
T Consensus        19 ~v~~G~~v~L~C~~~g~p~~~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Ds   86 (122)
T 3s35_X           19 ELSVGEKLVLNCTARTELNVGI-DFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQ   86 (122)
T ss_dssp             EEEETCCEEEEEEEEECTTCCC-EEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGC
T ss_pred             EEecCCeEEEEEEEEcCCCCcE-EEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccC
Confidence            4678999999999753222222 34899987433210  011111 11    12456799999888774

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=95.09  E-value=0.0037  Score=44.44  Aligned_cols=66  Identities=15%  Similarity=0.131  Sum_probs=0.0

Q ss_pred             EeeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          13 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        13 V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      -.+. .|..|.++.|.|.+...-  -.....|.+++..|.+    ++||.+ .+|.|.|.+++.+|.-  .-.|.+
T Consensus        15 ~~~~-~v~~G~~v~l~C~~~~~~--p~~~v~W~k~g~~~~~----~~~~~~-~~~~L~i~~v~~~D~G--~Y~C~a   80 (334)
T 1ry7_B           15 QEQL-VFGSGDAVELSCPPPGGG--PMGPTVWVKDGTGLVP----SERVLV-GPQRLQVLNASHEDSG--AYSCRQ   80 (334)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             cCcE-EEecCCcEEEEeeCCCCC--CCcceEEEECCeeCCC----cccEEe-ccceEEEeecccccCE--EEEEEE
Confidence            3344 678999999999986331  1236789999876644    466665 6889999999888752  344544

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=95.06  E-value=0.007  Score=41.93  Aligned_cols=68  Identities=16%  Similarity=0.158  Sum_probs=42.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee---ecC-------cCCCceEEEcc-----CccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI---YLN-------TDTGGKYVVLS-----SGDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I---~p~-------~~~dgKY~vlp-----sGeL~Ir~v~~~   77 (98)
                      .|..|.+|+|.|.+..+-.+ .....|++++     ..|   ++.       ....+||.+..     ++.|.|++++.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   89 (227)
T 1mju_H           11 LVKPGASVKLSCKASGYTFT-NYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTSD   89 (227)
T ss_dssp             EECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EEcCCCCEEEEEEecCCccc-cceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCCCcc
Confidence            45689999999998544212 2356898753     111   110       11358999874     468999999988


Q ss_pred             cCCcceeeeee
Q psy5692          78 TGNLSVKKMKV   88 (98)
Q Consensus        78 ~~n~~~~~~~~   88 (98)
                      |.  ..-.|.+
T Consensus        90 D~--G~Y~C~~   98 (227)
T 1mju_H           90 DS--AVYYCAN   98 (227)
T ss_dssp             GC--EEEEEEE
T ss_pred             cC--EEEEEEE
Confidence            75  3344443

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=95.06  E-value=0.013  Score=39.41  Aligned_cols=68  Identities=13%  Similarity=0.014  Sum_probs=42.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC---e---eeecCc--------CCCceEEEccC-----ccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD---V---NIYLNT--------DTGGKYVVLSS-----GDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd---~---~I~p~~--------~~dgKY~vlps-----GeL~Ir~v~~~~   78 (98)
                      .|..|.+|.|.|.+...-... ....|++++   .   .++...        ...+||.+..+     +.|.|++++.+|
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~-~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D   89 (210)
T 3d9a_H           11 LVKPSQTLSLTCSVTGDSITS-DYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTED   89 (210)
T ss_dssp             EECTTSCEEEEEEEESSCGGG-SCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             EecCCCcEEEEEEEecccCCC-CcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCCccc
Confidence            467899999999986442111 346898752   1   122111        13589988752     289999999887


Q ss_pred             CCcceeeeee
Q psy5692          79 GNLSVKKMKV   88 (98)
Q Consensus        79 ~n~~~~~~~~   88 (98)
                      .  ..-.|.+
T Consensus        90 ~--G~Y~C~~   97 (210)
T 3d9a_H           90 T--ATYYCAN   97 (210)
T ss_dssp             C--EEEEEEE
T ss_pred             C--EEEEEEE
Confidence            5  3344443

>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A

Probab=95.06  E-value=0.033  Score=34.95  Aligned_cols=66  Identities=11%  Similarity=0.131  Sum_probs=41.2

Q ss_pred             ceeecCeEEEEccCC-CCccceeEEeEEccCC-----e-eee--cCc-------CC-CceEEEccCc---cEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIP-SYMSEYIIVTSWIQDD-----V-NIY--LNT-------DT-GGKYVVLSSG---DLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IP-s~V~d~V~V~SW~~Dd-----~-~I~--p~~-------~~-dgKY~vlpsG---eL~Ir~v~~~   77 (98)
                      .|..|.+|.|.|.+. .+-.   ....|.+..     . .++  ...       .. .+||.+..++   -|.|++++.+
T Consensus        10 ~~~~G~~v~L~C~~~~~~~~---~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~~~~~   86 (111)
T 2qhl_A           10 TVKRGENVTMECSMSKVKDK---DKLAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMTVNDQKFDLNIIGTRED   86 (111)
T ss_dssp             ECCTTCCEEECCBCTTCSCG---GGEEEEEECTTBCCEEEEEECSSSSCEEECTTCCCTTEEEEESSSBEEEEESSCCGG
T ss_pred             EEeCCCCEEEEEEccCCccc---ceEEEEEecCCCCCEEEEEEeccCCccccccCCCCCcEEEEEcCCeEEEEECCCChh
Confidence            355899999999986 4432   236887742     1 221  111       12 6899887543   5999999987


Q ss_pred             cCCcceeeeee
Q psy5692          78 TGNLSVKKMKV   88 (98)
Q Consensus        78 ~~n~~~~~~~~   88 (98)
                      |.  +.=-|.+
T Consensus        87 Ds--G~Y~C~~   95 (111)
T 2qhl_A           87 DG--GEYFCGE   95 (111)
T ss_dssp             GC--EEEEEEE
T ss_pred             HC--EEEEEEE
Confidence            74  4444444

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=95.05  E-value=0.024  Score=35.34  Aligned_cols=67  Identities=13%  Similarity=0.178  Sum_probs=42.3

Q ss_pred             ceeecCeEEEEcc-CCCCccceeEEeEEccCC----eeeecCc----CCCceEEEc--cC---ccEEEEeEeeecCCcce
Q psy5692          18 NVILGNTAVLRCQ-IPSYMSEYIIVTSWIQDD----VNIYLNT----DTGGKYVVL--SS---GDLYVQIRLSITGNLSV   83 (98)
Q Consensus        18 ~VirGNtAVLkC~-IPs~V~d~V~V~SW~~Dd----~~I~p~~----~~dgKY~vl--ps---GeL~Ir~v~~~~~n~~~   83 (98)
                      .|..|.+|.|.|. +......  ....|.+..    ..||...    ...+||.+.  ++   ..|.|++++.+|.  ..
T Consensus        11 ~v~~G~~v~L~C~v~~~~~~~--~~v~W~r~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~Ds--G~   86 (109)
T 1pew_A           11 SESPGKTVTISCTRSSGNIAS--NYVQWYQQRSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDE--AD   86 (109)
T ss_dssp             EECTTSCEEEEEEESSSCGGG--SCCEEEEC-CCCEEEEBTTTBCCTTCCTTEEEEEETTTTEEEEEECSCCGGGC--EE
T ss_pred             EEcCCCCEEEEEEeCCCCCCC--ccEEEEEECCCCcEEEEecCCcCCCCCCcEEEEeccCCCEEEEEECCCChhhC--EE
Confidence            4558999999999 7544322  347898765    2233211    135899886  43   3699999998774  44


Q ss_pred             eeeee
Q psy5692          84 KKMKV   88 (98)
Q Consensus        84 ~~~~~   88 (98)
                      =-|.+
T Consensus        87 Y~C~~   91 (109)
T 1pew_A           87 YYCQS   91 (109)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44544

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=95.03  E-value=0.011  Score=39.74  Aligned_cols=59  Identities=10%  Similarity=0.192  Sum_probs=40.0

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-ecC----cCCCceEEEcc---CccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN----TDTGGKYVVLS---SGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~p~----~~~dgKY~vlp---sGeL~Ir~v~~~~~   79 (98)
                      .|..|.+++|.|.+....   .....|.+++     ..+ +..    ...++||.+.+   ++.|.|++++.+|.
T Consensus        35 ~v~~G~~v~L~C~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~  106 (237)
T 3sob_L           35 SASVGDRVTITCRASQDV---STAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDF  106 (237)
T ss_dssp             EEETTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeCCCcEEEEEecCCCC---CceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChhhC
Confidence            677899999999987552   3456787732     222 211    12367998874   45699999998875

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=95.02  E-value=0.0065  Score=39.75  Aligned_cols=66  Identities=11%  Similarity=0.128  Sum_probs=44.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeee--------cCcCCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIY--------LNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~--------p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .+..|.++.|.|.++..-   .....|.+++..+.        ......+|+.+.. +.|.|++++..|.-  .-.|.+.
T Consensus        15 ~v~~G~~v~L~C~~~~~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~L~i~~~~~~d~G--~Y~C~~~   88 (209)
T 1nbq_A           15 RIPENNPVKLSCAYSGFS---SPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP-TGITFKSVTREDTG--TYTCMVS   88 (209)
T ss_dssp             CEETTCCCEEECEEESCS---SEEEEEEEEETTEEEESEETTEECTTTTTTCEEET-TEEECSCCCTTSCS--EEEEEEE
T ss_pred             EEEcCCCEEEEEEEeCCC---CcEEEEEEcCCceeEEEEecCccCccccCceEeec-cEEEEeeCCHHHCc--EEEEEEe
Confidence            467899999999987542   23468999873321        0123457777765 89999998887653  4556554

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=95.00  E-value=0.014  Score=41.36  Aligned_cols=69  Identities=10%  Similarity=0.166  Sum_probs=42.6

Q ss_pred             ceeecCeEEEEccC--CCCccceeEEeEEccCCe----eee-c----CcCCCceEEEc--------cCccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQI--PSYMSEYIIVTSWIQDDV----NIY-L----NTDTGGKYVVL--------SSGDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~I--Ps~V~d~V~V~SW~~Dd~----~I~-p----~~~~dgKY~vl--------psGeL~Ir~v~~~~   78 (98)
                      .++.|.+++|.|.+  |+.-...+...+|.+++.    .++ +    ....++|+.+.        .++.|.|++++.+|
T Consensus        11 ~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~~D   90 (313)
T 4fqp_A           11 PGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVED   90 (313)
T ss_dssp             CCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECSCCGGG
T ss_pred             EEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECcCChhh
Confidence            45689999999987  333334455578998862    111 1    11234566553        24679999999887


Q ss_pred             CCcceeeeee
Q psy5692          79 GNLSVKKMKV   88 (98)
Q Consensus        79 ~n~~~~~~~~   88 (98)
                      .  ..-.|.+
T Consensus        91 ~--G~Y~C~v   98 (313)
T 4fqp_A           91 E--GNYTCLF   98 (313)
T ss_dssp             C--EEEEEEE
T ss_pred             C--EEEEEEE
Confidence            4  3445544

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=95.00  E-value=0.025  Score=37.71  Aligned_cols=57  Identities=16%  Similarity=0.135  Sum_probs=36.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccC---C--e-eeecCc----CCCceEEEcc---CccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQD---D--V-NIYLNT----DTGGKYVVLS---SGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~D---d--~-~I~p~~----~~dgKY~vlp---sGeL~Ir~v~~~~~   79 (98)
                      .|..|.+++|.|.+.     -.....|.++   .  . .++...    ...+||.+..   ++.|.|++++.+|.
T Consensus        11 ~v~~G~~v~L~C~~~-----~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   80 (211)
T 3tv3_L           11 SGSPGQSITISCTGT-----SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDE   80 (211)
T ss_dssp             EECTTCEEEEEEECC-----CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGC
T ss_pred             EEcCCCCEEEEEEEC-----CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHC
Confidence            456899999999976     1234678873   2  1 222111    1357888653   45699999998874

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=94.99  E-value=0.012  Score=44.11  Aligned_cols=61  Identities=15%  Similarity=0.234  Sum_probs=40.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC--e----eeecC---------cCCCceEEEcc-----CccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V----NIYLN---------TDTGGKYVVLS-----SGDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd--~----~I~p~---------~~~dgKY~vlp-----sGeL~Ir~v~~~   77 (98)
                      .|..|.+|+|.|.++.+.... ....|++++  .    .++-.         ....+||.+..     ++.|.|++++.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   89 (444)
T 1igt_B           11 LVQPGGSLKLSCATSGFTFSD-YYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSRLKSE   89 (444)
T ss_dssp             EECTTCCEEEEEEEESSCGGG-SCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EEcCCCCEEEEEEcCCCccCC-ceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECCCCHH
Confidence            567999999999986543211 246898753  1    11211         11357999875     458999999988


Q ss_pred             cC
Q psy5692          78 TG   79 (98)
Q Consensus        78 ~~   79 (98)
                      |.
T Consensus        90 D~   91 (444)
T 1igt_B           90 DT   91 (444)
T ss_dssp             GC
T ss_pred             HC
Confidence            75

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=94.98  E-value=0.024  Score=40.21  Aligned_cols=59  Identities=15%  Similarity=0.290  Sum_probs=40.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-ecC----cCCCceEEEccCc---cEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN----TDTGGKYVVLSSG---DLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~p~----~~~dgKY~vlpsG---eL~Ir~v~~~~~   79 (98)
                      .|..|.+++|.|.+...-.   ....|.+++     ..+ +..    ...++||.+.++|   .|.|++++.+|.
T Consensus        23 ~v~~G~~v~L~C~~~~~p~---~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds   94 (276)
T 3auv_A           23 SASVGDRVTITCRASQDVS---TAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDF   94 (276)
T ss_dssp             ECCTTCCEEEEEEESSCCT---TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEcCCCCEEEEeEcCCCCC---CcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChhhC
Confidence            4779999999999864432   246788753     122 211    1246899998765   799999998774

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=94.97  E-value=0.016  Score=37.82  Aligned_cols=66  Identities=20%  Similarity=0.342  Sum_probs=44.3

Q ss_pred             ceeecCeEEEEccC-CCCccceeEEeEEccCCeeeecCcC-----CCceEEEc-cCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQI-PSYMSEYIIVTSWIQDDVNIYLNTD-----TGGKYVVL-SSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~I-Ps~V~d~V~V~SW~~Dd~~I~p~~~-----~dgKY~vl-psGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+..|.++.|.|.+ ..+-..   ..+|.+++..|.....     .+++|.+. .++.|.|++++.+|.-  .-.|.+
T Consensus       118 ~~~~g~~~~l~C~~~~~~p~~---~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G--~Y~C~a  190 (209)
T 1nbq_A          118 SATIGNRAVLTCSEQDGSPPS---EYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTG--EYSCEA  190 (209)
T ss_dssp             EEETTSCEEECCCCCSCBSCC---EEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCC--CEEEEE
T ss_pred             ceecCCEEEEEEeCCCCCCCc---eeEEEECCeeCCCccccceeeeccceEEcCCcceEEEEeccccCCe--EEEEEE
Confidence            46789999999996 333222   6789999866643221     13567665 5789999998887753  445544

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=94.95  E-value=0.021  Score=40.62  Aligned_cols=59  Identities=12%  Similarity=0.129  Sum_probs=39.7

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----e-eeecC---------cCCCceEEEcc----CccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----V-NIYLN---------TDTGGKYVVLS----SGDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~-~I~p~---------~~~dgKY~vlp----sGeL~Ir~v~~~~   78 (98)
                      .|..|.+|+|.|.+...   -.....|++++     . .++..         ....+||.+..    ++.|.|++++.+|
T Consensus        35 ~v~~G~~v~L~C~~~~~---~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D  111 (279)
T 2wbj_D           35 ISKSGTSVKIECRSLDF---QATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPED  111 (279)
T ss_dssp             EEETTSCEEEEEEESSS---CEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEESSCCGGG
T ss_pred             EecCCCeEEEEEEeCCC---CCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEEccCCccC
Confidence            57799999999998533   23557898763     1 11111         12368999874    3479999998877


Q ss_pred             C
Q psy5692          79 G   79 (98)
Q Consensus        79 ~   79 (98)
                      .
T Consensus       112 ~  112 (279)
T 2wbj_D          112 S  112 (279)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=94.94  E-value=0.025  Score=39.29  Aligned_cols=68  Identities=18%  Similarity=0.212  Sum_probs=42.0

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-ec---------CcCCCceEEEccCcc-----EEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YL---------NTDTGGKYVVLSSGD-----LYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~p---------~~~~dgKY~vlpsGe-----L~Ir~v~~~   77 (98)
                      .|..|.+++|.|.++.+-.. .....|++..     ..| +.         .....+||.+..++.     |.|++++.+
T Consensus        13 ~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~   91 (256)
T 3umt_A           13 LVKPGASVKISCKTSGYTFT-EYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLTSE   91 (256)
T ss_dssp             EECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             EEcCCCCEEEEEEEeccccc-ccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCCcc
Confidence            45689999999997643211 1245787532     111 11         112368999987555     999999988


Q ss_pred             cCCcceeeeee
Q psy5692          78 TGNLSVKKMKV   88 (98)
Q Consensus        78 ~~n~~~~~~~~   88 (98)
                      |.  ..-.|.+
T Consensus        92 Ds--G~Y~C~~  100 (256)
T 3umt_A           92 DS--AVYYCAR  100 (256)
T ss_dssp             GC--EEEEEEE
T ss_pred             cC--EEEEEEE
Confidence            73  3444444

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=94.90  E-value=0.014  Score=39.33  Aligned_cols=50  Identities=14%  Similarity=0.057  Sum_probs=33.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc----CccEEEEeEe
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS----SGDLYVQIRL   75 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp----sGeL~Ir~v~   75 (98)
                      .|..|.+++|.|.....   .. ...|.+|+..+.+.    ..+...+    ++.|.|.+|+
T Consensus       118 ~v~~G~~v~L~C~~~~~---~~-~~~w~k~g~~~~~~----~~~~~~~~~~~~~~L~i~~v~  171 (201)
T 1nkr_A          118 TVLAGENVTLSCSSRSS---YD-MYHLSREGEAHERR----LPAGPKVNGTFQADFPLGPAT  171 (201)
T ss_dssp             EECTTCEEEEEEEESSC---CS-EEEEEETTCSSCEE----EECEEEETTEEEEEEEEEECC
T ss_pred             ccCCCCeEEEEEeCCCC---Cc-eEEEEECCcccCcc----cccccccCCceEEEEEeCCcC
Confidence            57899999999997532   22 35699998555331    1222222    6789999987

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=94.90  E-value=0.017  Score=39.67  Aligned_cols=68  Identities=18%  Similarity=0.208  Sum_probs=43.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccC--C---eee---ec-------CcCCCceEEEccCc-----cEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQD--D---VNI---YL-------NTDTGGKYVVLSSG-----DLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~D--d---~~I---~p-------~~~~dgKY~vlpsG-----eL~Ir~v~~~   77 (98)
                      .+..|.++.|.|.+..+-... ....|.++  +   ..+   ++       .....+||.+..++     .|.|++++.+
T Consensus       142 ~v~~G~~v~L~C~~~~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~  220 (250)
T 3esu_F          142 LVKPGASVKISCKDSGYAFSS-SWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSV  220 (250)
T ss_dssp             EECTTCCEEEEEECCSTTGGG-SEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             EEcCCceEEEEEEecCCcccC-CEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcc
Confidence            567899999999986543222 34679876  2   111   10       11234899998665     5999999988


Q ss_pred             cCCcceeeeee
Q psy5692          78 TGNLSVKKMKV   88 (98)
Q Consensus        78 ~~n~~~~~~~~   88 (98)
                      |.  ..-.|.+
T Consensus       221 Ds--G~Y~C~~  229 (250)
T 3esu_F          221 DS--AVYFCAR  229 (250)
T ss_dssp             GC--EEEEEEE
T ss_pred             cC--EEEEEEE
Confidence            74  3444443

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=94.88  E-value=0.013  Score=40.37  Aligned_cols=68  Identities=12%  Similarity=0.161  Sum_probs=43.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-ecC---------cCCCceEEEccC-----ccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN---------TDTGGKYVVLSS-----GDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~p~---------~~~dgKY~vlps-----GeL~Ir~v~~~   77 (98)
                      .|..|.+|+|.|.+..+-... ....|++++     ..| +-.         ....+||.+..+     +.|.|++++.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~-~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   89 (223)
T 1dee_B           11 VVQPGKSLRLSCAASGFTFSG-YGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAE   89 (223)
T ss_dssp             EECTTCCEEEEEEEESSCGGG-SCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EEcCCCcEEEEEEecCcccCC-ceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCCHH
Confidence            567999999999986432211 346898753     122 211         124589998752     47999999988


Q ss_pred             cCCcceeeeee
Q psy5692          78 TGNLSVKKMKV   88 (98)
Q Consensus        78 ~~n~~~~~~~~   88 (98)
                      |.  ..-.|.+
T Consensus        90 D~--G~Y~C~~   98 (223)
T 1dee_B           90 DT--AVYYCAK   98 (223)
T ss_dssp             GC--EEEEEEE
T ss_pred             HC--EEEEEEE
Confidence            75  4444444

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=94.87  E-value=0.016  Score=41.85  Aligned_cols=61  Identities=13%  Similarity=0.192  Sum_probs=43.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+..|.++.|.|.+..+-.   ...+|.+++..|.+    +.|+.+ .+|.|.|.+++.+|.  ..-.|..
T Consensus       305 ~~~~g~~~~l~C~~~g~p~---p~v~W~~~g~~~~~----~~~~~~-~~~~L~i~~v~~~d~--G~Y~C~a  365 (382)
T 1cs6_A          305 EADIGSDLRWSCVASGKPR---PAVRWLRDGQPLAS----QNRIEV-SGGELRFSKLVLEDS--GMYQCVA  365 (382)
T ss_dssp             EEETTCCEEEECEEEEESC---CEEEEEETTEECCC----CSSEEE-ETTEEEESSCCGGGC--EEEEEEE
T ss_pred             EEcCCCeEEEEEEeeeecC---CEEEEEECCEECCC----CceEEE-ECCEEEECcCCcccC--EEEEEEE
Confidence            5678999999999743322   23689999977644    467766 578999999987774  3455554

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=94.87  E-value=0.0077  Score=44.84  Aligned_cols=57  Identities=12%  Similarity=0.095  Sum_probs=37.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~   78 (98)
                      .+..|.++.|.|.++.+-...-...+|.+|+..|.+..    .+....+|.|.|++++..|
T Consensus        97 ~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~----~~~~~~~~~L~i~~~~~~d  153 (450)
T 1z7z_I           97 WQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREP----AVGEPAEVTTTVLVRRDHH  153 (450)
T ss_dssp             EECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEE----CCTTTEEEEEEEECCSSCS
T ss_pred             eEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeeccc----ccccccceEEEEEeecccc
Confidence            57899999999998754433223578999997775532    1111234677777766654

>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*

Probab=94.86  E-value=0.021  Score=36.31  Aligned_cols=78  Identities=15%  Similarity=0.148  Sum_probs=46.2

Q ss_pred             ceeeeceEEEEeeeeceeecCeEEEEccCCCCccceeEEeEEccCC------eeeecC----cCCCceEEEccCc---cE
Q psy5692           3 PVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIYLN----TDTGGKYVVLSSG---DL   69 (98)
Q Consensus         3 AVV~Q~Yev~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd------~~I~p~----~~~dgKY~vlpsG---eL   69 (98)
                      ++|.|+=.  +    .|..|.++.|.|.+......--....|.+..      ..++-.    ....+||.+..++   -|
T Consensus         2 ~~v~q~~~--~----~~~~G~~v~L~C~~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L   75 (120)
T 1oaq_L            2 AVVTQESA--L----TTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAAL   75 (120)
T ss_dssp             CCEEECSE--E----EECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEE
T ss_pred             CcEEcCCc--E----EEcCCCCEEEEEEeCCCccCCCCEEEEEEeCCCCCCeEEEEEcCccCCCCCCceEEecCCCeEEE
Confidence            56677532  3    3458999999999865431001236897742      122221    1135789886433   69


Q ss_pred             EEEeEeeecCCcceeeeee
Q psy5692          70 YVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        70 ~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .|++++.+|.  +.=-|.+
T Consensus        76 ~I~~~~~~Ds--G~Y~C~~   92 (120)
T 1oaq_L           76 TITGAQTEDE--AIYFCAL   92 (120)
T ss_dssp             EEESCCGGGC--EEEEEEE
T ss_pred             EECCCChhhC--eEEEEEE
Confidence            9999998774  3334443

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=94.85  E-value=0.01  Score=38.95  Aligned_cols=51  Identities=14%  Similarity=0.218  Sum_probs=34.2

Q ss_pred             cCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692          22 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        22 GNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      |.++.|.|.+...-. -.....|.+++..|..    +.++.  .++.|.|.+++.+|.
T Consensus        18 G~~v~l~C~~~~~~~-~~~~v~W~~~~~~~~~----~~~~~--~~~~L~i~~~~~~d~   68 (190)
T 2wv3_A           18 LLPVTLQCNLTSSSH-TLMYSYWTKNGVELTA----TRKNA--SNMEYRINKPRAEDS   68 (190)
T ss_dssp             SSCEEEEEEEEECSS-CEEEEEEEETTEECTT----CCBCC--SEEEEEESSCCGGGC
T ss_pred             CceEEEEEEeccCCC-CceEEEEEECCEECcc----cceEe--ccEEEEEecCCcccC
Confidence            999999999764433 2346789999876643    12221  567788887776654

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=94.83  E-value=0.016  Score=41.30  Aligned_cols=59  Identities=17%  Similarity=0.218  Sum_probs=41.2

Q ss_pred             ceeecCeEEEEccCCCCc--cceeEEeEEccCCeeeecCcCCCceEEEccC-ccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYM--SEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS-GDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V--~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlps-GeL~Ir~v~~~~~   79 (98)
                      .+..|.++.|.|.++.+-  ..-....+|.+++..+.+   ..++|.+..+ |.|.|.+++..|.
T Consensus       131 ~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~---~~~~~~~~~~~~~L~i~~v~~~d~  192 (339)
T 3o4o_C          131 ILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDK---DNEKFLSVRGTTHLLVHDVALEDA  192 (339)
T ss_dssp             EEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCT---TCSSEEECTTSSEEEESSCCGGGC
T ss_pred             EEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCC---CCceeEEcCCcceEEEcccCHhhC
Confidence            567899999999953211  111234689999876644   3578888764 6899999887664

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=94.82  E-value=0.036  Score=38.61  Aligned_cols=57  Identities=16%  Similarity=0.211  Sum_probs=38.0

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEc-cCccEEEEeEeeecCC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL-SSGDLYVQIRLSITGN   80 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vl-psGeL~Ir~v~~~~~n   80 (98)
                      .|..|.++.|.|.+...-..  ....|.+++..|.+    +.+|.+. .++.|.|++++..|.-
T Consensus        17 ~v~~G~~v~l~C~~~~~~p~--~~v~W~~~~~~~~~----~~~~~~~~~~~~L~i~~~~~~d~G   74 (317)
T 2y25_A           17 EVTGECNVLLKCKVANIKKE--THIVWYKDEREISV----DEKHDFKDGICTLLITEFSKKDAG   74 (317)
T ss_dssp             EEETTTEEEEEEEEESCCTT--CEEEEEETTEEECC----SCC-----CCEEEEETTCCSTTCS
T ss_pred             EECCCCeEEEEEEEcCCCCC--CEEEEEECCeEcCC----CCcEEEECCeEEEEEccCCcccCe
Confidence            67799999999997543211  35689999977643    4566554 3468999888877653

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=94.82  E-value=0.022  Score=35.41  Aligned_cols=68  Identities=7%  Similarity=0.044  Sum_probs=43.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-ecCc----CCCceEEEc--c---CccEEEEeEeeecCCcc
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLNT----DTGGKYVVL--S---SGDLYVQIRLSITGNLS   82 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~p~~----~~dgKY~vl--p---sGeL~Ir~v~~~~~n~~   82 (98)
                      .|..|.+|.|.|.+.+....+  ...|.+.+     ..| +...    ...|||.+.  +   +..|.|++++.+|.  .
T Consensus        12 ~~~~G~~v~L~C~~~~~~~~~--~v~W~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Ds--G   87 (113)
T 1zox_A           12 SGQEQGSLTVQCRYTSGWKDY--KKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLRMSDA--G   87 (113)
T ss_dssp             EEETTSCEEEEEEECGGGTTS--CEEEEESSSGGGCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGGGC--E
T ss_pred             EEeCCCcEEEEeECCCCcccc--eEEEEeCCCCCCCeEEEEecCccccccCCCEEEEECCcCCEEEEEEccCCHHHC--E
Confidence            456899999999986433333  47898875     122 2211    135788886  2   23699999998774  4


Q ss_pred             eeeeeeh
Q psy5692          83 VKKMKVE   89 (98)
Q Consensus        83 ~~~~~~~   89 (98)
                      .=.|.+.
T Consensus        88 ~Y~C~v~   94 (113)
T 1zox_A           88 IYWCGIT   94 (113)
T ss_dssp             EEEEEEC
T ss_pred             EEEEeeE
Confidence            4455544

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=94.81  E-value=0.012  Score=40.42  Aligned_cols=61  Identities=13%  Similarity=0.219  Sum_probs=39.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-ecC---------cCCCceEEEcc-----CccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN---------TDTGGKYVVLS-----SGDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~p~---------~~~dgKY~vlp-----sGeL~Ir~v~~~   77 (98)
                      .|..|.+|+|.|.+..+-.. .....|++++     ..| +-.         ....+||.+..     ++.|.|++++.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   89 (225)
T 1op3_H           11 LVKAGGSLILSCGVSNFRIS-AHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVE   89 (225)
T ss_dssp             EEETTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EecCCCCEEEEEEecCcccC-CceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCChh
Confidence            56689999999998543211 2347898743     112 111         12468999874     468999999987


Q ss_pred             cC
Q psy5692          78 TG   79 (98)
Q Consensus        78 ~~   79 (98)
                      |.
T Consensus        90 D~   91 (225)
T 1op3_H           90 DT   91 (225)
T ss_dssp             GC
T ss_pred             hC
Confidence            74

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=94.80  E-value=0.013  Score=40.25  Aligned_cols=61  Identities=11%  Similarity=0.194  Sum_probs=39.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC------eeeec---------CcCCCceEEEccC-----ccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIYL---------NTDTGGKYVVLSS-----GDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd------~~I~p---------~~~~dgKY~vlps-----GeL~Ir~v~~~   77 (98)
                      .|..|.+++|.|.+...-.. -....|.+++      ..++-         .....+||.+..+     +.|.|++++.+
T Consensus        13 ~v~~G~~v~L~C~~~g~p~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~   91 (247)
T 2ghw_B           13 VVQPGKSLRLSCAASGFAFS-SYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAE   91 (247)
T ss_dssp             EECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EEecCCcEEEEEEeccccCC-CceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCCHH
Confidence            56799999999998644211 1236798742      11111         1124689998763     46999999988


Q ss_pred             cC
Q psy5692          78 TG   79 (98)
Q Consensus        78 ~~   79 (98)
                      |.
T Consensus        92 D~   93 (247)
T 2ghw_B           92 DT   93 (247)
T ss_dssp             GC
T ss_pred             HC
Confidence            74

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=94.79  E-value=0.0048  Score=43.48  Aligned_cols=66  Identities=12%  Similarity=0.108  Sum_probs=44.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .|..|.++.|.|.+...-..  ....|.+++..+......+.|+... +|.|.|.+++..|.-  .-.|.+
T Consensus        16 ~v~~G~~v~L~C~~~~~~~~--~~v~W~k~~~~~~~~~~~~~~~~~~-~~~L~i~~v~~~D~G--~Y~C~a   81 (315)
T 1itb_B           16 VSSANEIDVRPCPLNPNEHK--GTITWYKDDSKTPVSTEQASRIHQH-KEKLWFVPAKVEDSG--HYYCVV   81 (315)
T ss_dssp             EEETTSCCCCBCCCCSCCCS--SCCCEECTTSCSCSCCCTTSSSEEC-SSBEECTTCCGGGCS--CCEECC
T ss_pred             EEcCCCcEEEEeeccCcCCC--ceEEEEeCCCcCccccccCCcEecc-CCeEEECCCChhhCE--EEEEEE
Confidence            56789999999998654311  2678999984332223346677664 679999999888763  444443

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=94.79  E-value=0.0028  Score=40.84  Aligned_cols=66  Identities=6%  Similarity=0.067  Sum_probs=40.7

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecC------cCCCceEEEc------cCccEEEEeEeeecCCcceee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN------TDTGGKYVVL------SSGDLYVQIRLSITGNLSVKK   85 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~------~~~dgKY~vl------psGeL~Ir~v~~~~~n~~~~~   85 (98)
                      .+..|.++.|.|.+...-.-   ...|.+++..+...      ....+++.+.      .+|.|.|.+++.+|.  ..-.
T Consensus        32 ~v~~G~~v~L~C~~~g~P~p---~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~--G~Y~  106 (137)
T 3qr2_A           32 QRWVGGSVELHCEAVGSPVP---EIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDT--GTYE  106 (137)
T ss_dssp             EEETTSCEEEEEEEECSSCC---EEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECSCCGGGC--EEEE
T ss_pred             EEeCCCCEEEEEEEeeecCC---eEEEEECCCCccccceeecccCcccceEEecccccccceEEEECCCCcccC--EEEE
Confidence            67789999999997544332   46799876433110      0002344443      678999999987764  3444


Q ss_pred             eee
Q psy5692          86 MKV   88 (98)
Q Consensus        86 ~~~   88 (98)
                      |..
T Consensus       107 C~a  109 (137)
T 3qr2_A          107 CRA  109 (137)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC, immune system; HET: NAG; 2.40A {Mus musculus} SCOP: b.1.1.1 PDB: 3b9k_B*

Probab=94.79  E-value=0.026  Score=35.40  Aligned_cols=67  Identities=12%  Similarity=0.116  Sum_probs=41.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCe--------ee-ecC---------cCCCceEEEcc--C---ccEEEEeE
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDV--------NI-YLN---------TDTGGKYVVLS--S---GDLYVQIR   74 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~--------~I-~p~---------~~~dgKY~vlp--s---GeL~Ir~v   74 (98)
                      .|..|.+|.|.|.+.+....  ....|.+...        .| +-.         ....+||.+..  +   ..|.|+++
T Consensus         9 ~~~~G~~vtL~C~~~~~~~~--~~v~W~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~   86 (115)
T 2atp_B            9 LVQTNHTAKMSCEVKSISKL--TSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIMNV   86 (115)
T ss_dssp             EECTTSCEEEEEECCSSCCS--SEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEECSC
T ss_pred             EEcCCCcEEEEEEecCCCCc--ccEEEEEeCCCCCCCccEEEEEEeCCCCeEecCCCccCcEEEEEeCCCCEEEEEECCC
Confidence            45689999999998644322  3578877541        12 211         11258998864  3   36999999


Q ss_pred             eeecCCcceeeeee
Q psy5692          75 LSITGNLSVKKMKV   88 (98)
Q Consensus        75 ~~~~~n~~~~~~~~   88 (98)
                      +.+|.  +.=-|.+
T Consensus        87 ~~~Ds--G~Y~C~~   98 (115)
T 2atp_B           87 KPEDS--DFYFCAT   98 (115)
T ss_dssp             CGGGC--EEEEEEE
T ss_pred             CHHHC--EEEEEeE
Confidence            98774  4444544

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=94.78  E-value=0.018  Score=39.51  Aligned_cols=68  Identities=15%  Similarity=0.135  Sum_probs=42.7

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-ecC---------cCCCceEEEccC-----ccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN---------TDTGGKYVVLSS-----GDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~p~---------~~~dgKY~vlps-----GeL~Ir~v~~~   77 (98)
                      .|..|.+|+|.|.+..+-... ....|++..     ..| +-.         ....+||.+..+     +.|.|++++.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~-~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   89 (220)
T 2fbj_H           11 LVQPGGSLKLSCAASGFDFSK-YWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSE   89 (220)
T ss_dssp             EECTTCCEEEEEEEESSCGGG-SCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGG
T ss_pred             EecCCCcEEEEEEecCccCCC-ceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCChh
Confidence            566899999999985432111 246898753     112 211         124689998753     47999999988


Q ss_pred             cCCcceeeeee
Q psy5692          78 TGNLSVKKMKV   88 (98)
Q Consensus        78 ~~n~~~~~~~~   88 (98)
                      |.  ..-.|.+
T Consensus        90 Ds--G~Y~C~~   98 (220)
T 2fbj_H           90 DT--ALYYCAR   98 (220)
T ss_dssp             GC--EEEEEEE
T ss_pred             hC--EEEEEEE
Confidence            75  3444443

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=94.77  E-value=0.019  Score=38.31  Aligned_cols=58  Identities=19%  Similarity=0.234  Sum_probs=37.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eeeecCcCCCceEEEc-----cCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYLNTDTGGKYVVL-----SSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I~p~~~~dgKY~vl-----psGeL~Ir~v~~~~~   79 (98)
                      .|..|.++.|.|.+....... ....|.+..     ..+.   ..+|||.+.     .+..|.|++++.+|.
T Consensus        11 ~v~~G~svtL~C~~s~~~~~~-~~v~Wyrq~~g~~~~~li---~~~~R~~~~~~~~~~~~sL~I~~v~~~Ds   78 (126)
T 3moq_A           11 TKETGESLTINCVLRDASFEL-KDTGWYRTKLGSTNEQSI---SIGGRYVETVNKGSKSFSLRISDLRVEDS   78 (126)
T ss_dssp             EEETTCCEEEEEEEESCSSCC-CEEEEEEEETTCCCCEEC---CCBTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EEeCCCCEEEEEEeecCccCC-ceEEEEEeCCCCCceEEE---EeCCcEEEEEeCCCCEEEEEECcCChHhC
Confidence            455899999999986442111 245898852     1121   136888874     134699999998874

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=94.75  E-value=0.04  Score=35.46  Aligned_cols=66  Identities=11%  Similarity=0.181  Sum_probs=42.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----e-eeecC----cCCCceEEEcc---CccEEEEeEeeecCCccee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----V-NIYLN----TDTGGKYVVLS---SGDLYVQIRLSITGNLSVK   84 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~-~I~p~----~~~dgKY~vlp---sGeL~Ir~v~~~~~n~~~~   84 (98)
                      .|..|.+|+|.|.+......   ...|.+..     . .++..    ....+||.+.+   +..|.|++++.+|.  +.=
T Consensus        14 ~v~~G~~vtL~C~~~~~~~~---~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~Ds--G~Y   88 (119)
T 2e27_L           14 SASLGGKVTITCKANQDIKK---KIAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGSGSGRDYSFSISNLEPEDA--ATY   88 (119)
T ss_dssp             EEETTCCEEEEEEESSCCTT---CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGC--EEE
T ss_pred             EEeCCCCEEEEEEeCCCCCc---eEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEccCCEEEEEECCCChHHC--EEE
Confidence            45689999999998655432   36898753     2 23321    12357998865   34699999998764  444


Q ss_pred             eeee
Q psy5692          85 KMKV   88 (98)
Q Consensus        85 ~~~~   88 (98)
                      -|.+
T Consensus        89 ~C~~   92 (119)
T 2e27_L           89 YCLQ   92 (119)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4444

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.73  E-value=0.016  Score=37.43  Aligned_cols=67  Identities=16%  Similarity=0.221  Sum_probs=41.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC----eeeecCcC-CCceEEEcc--------CccEEEEeEeeecCCccee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD----VNIYLNTD-TGGKYVVLS--------SGDLYVQIRLSITGNLSVK   84 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd----~~I~p~~~-~dgKY~vlp--------sGeL~Ir~v~~~~~n~~~~   84 (98)
                      .|..|.+|+|.|.+.....  .....|.+..    ..|+.... ..+|+...+        +..|.|++++.+|.  ..=
T Consensus        19 ~v~~G~~v~L~C~~~~~~~--~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~Ds--G~Y   94 (136)
T 2d9c_A           19 SVAAGESATLRCAMTSLIP--VGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPADA--GTY   94 (136)
T ss_dssp             EEETTSCEEECCEESCCCS--CCCCEEEETTTSSCEEEEESSSCCCSSBCCSSCSSSSSCCBCCEEESSCCTTTC--EEE
T ss_pred             EEcCCCCEEEEEEEcCCCC--CceEEEEeecCCCeEEEEEcCCCcccceeeeeeeccCCCCEEEEEECCCCHHHC--EEE
Confidence            4568999999999865422  2357899875    23443211 114665432        56799999988764  444


Q ss_pred             eeee
Q psy5692          85 KMKV   88 (98)
Q Consensus        85 ~~~~   88 (98)
                      .|.+
T Consensus        95 ~C~~   98 (136)
T 2d9c_A           95 YCVK   98 (136)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=94.72  E-value=0.033  Score=34.94  Aligned_cols=66  Identities=15%  Similarity=0.176  Sum_probs=41.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----e-eeecC----cCCCceEEEccC---ccEEEEeEeeecCCccee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----V-NIYLN----TDTGGKYVVLSS---GDLYVQIRLSITGNLSVK   84 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~-~I~p~----~~~dgKY~vlps---GeL~Ir~v~~~~~n~~~~   84 (98)
                      .|..|.+++|.|.+.....   ....|.+..     . .++..    ....+||.+..+   ..|.|++++.+|.  +.=
T Consensus        15 ~~~~G~~v~L~C~~~~~~~---~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~Ds--G~Y   89 (111)
T 1i3g_L           15 STSVGDRVSITCKASQDVG---TAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSEDL--ADY   89 (111)
T ss_dssp             ECCTTCCEEEEEEESSCCT---TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC--SEE
T ss_pred             EEcCCCCEEEEEEeCCCCC---CCEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEcCCCEEEEEECCCCHHHC--EEE
Confidence            4568999999999865432   246888754     1 22321    123578988643   3699999998774  344


Q ss_pred             eeee
Q psy5692          85 KMKV   88 (98)
Q Consensus        85 ~~~~   88 (98)
                      -|.+
T Consensus        90 ~C~~   93 (111)
T 1i3g_L           90 FCQQ   93 (111)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=94.72  E-value=0.0084  Score=39.98  Aligned_cols=53  Identities=9%  Similarity=-0.008  Sum_probs=37.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      .|..|.++.|.|.....-    .-..|.+++..+.+.     .......+.|.|.+++.+|.
T Consensus       104 ~v~~G~~v~l~C~~~~~~----~~~~w~k~g~~~~~~-----~~~~~~~~~L~i~~v~~~D~  156 (184)
T 2gi7_A          104 AVSSGGDVTLQCQTRYGF----DQFALYKEGDPAPYK-----NPERWYRASFPIITVTAAHS  156 (184)
T ss_dssp             SSCCTTCEEEEEECSSCC----CEEEEEECCCCTTSC-----CCCEEEEESSSEEEETTCCS
T ss_pred             eecCCCcEEEEEEcCCCC----cEEEEEECCCcCcce-----ecCCCceEEEEEccCCccCC
Confidence            678899999999975332    256899998655331     11234678899999988775

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=94.71  E-value=0.015  Score=38.72  Aligned_cols=59  Identities=17%  Similarity=0.236  Sum_probs=39.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----e-eeecC----cCCCceEEEccC---ccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----V-NIYLN----TDTGGKYVVLSS---GDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~-~I~p~----~~~dgKY~vlps---GeL~Ir~v~~~~~   79 (98)
                      .|..|.+++|.|.+...-   .....|.+++     . .++..    ...++||.+.+.   +.|.|++++.+|.
T Consensus        12 ~v~~G~~v~L~C~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   83 (213)
T 3r06_A           12 PASLGDRVTINCQASQDI---SNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDI   83 (213)
T ss_dssp             EECTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EecCCCcEEEEEEeCCCc---CceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcccC
Confidence            566899999999986552   3346787632     1 22211    124679988753   4899999998875

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=94.71  E-value=0.023  Score=40.28  Aligned_cols=59  Identities=17%  Similarity=0.214  Sum_probs=37.7

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      .+..|.++.|.|.+...-.   ...+|.+++..+.+.....+......++.|.|.+++..|.
T Consensus       134 ~v~~g~~v~l~C~~~g~p~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  192 (334)
T 1ry7_B          134 AVPAANTVRFRCPAAGNPT---PSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDR  192 (334)
T ss_dssp             EEETTCCEEEECCCCCSSC---CEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGC
T ss_pred             EecCCCcEEEEEEccCCCC---CeEEEEECCEECcccccccceecccceEEEEECCCCcccC
Confidence            4568999999999865432   2478999987665432221212223456788888777664

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=94.70  E-value=0.03  Score=38.39  Aligned_cols=48  Identities=15%  Similarity=0.289  Sum_probs=32.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~   78 (98)
                      .|..|.++.|.|.+...-...  ...|.+++..|...           .+.|.|.+++.+|
T Consensus        18 ~v~~G~~v~L~C~~~~~p~~~--~v~W~k~g~~l~~~-----------~~~L~i~~v~~~D   65 (204)
T 3sgj_C           18 RVLEKDSVTLKCQGAYSPEDQ--STQWFHNESLISSQ-----------ASSYFIDAATVDD   65 (204)
T ss_dssp             EEETTCCEEEEEECCSSSSCC--CEEEEETTEEESCC-----------SSEEEESSCCGGG
T ss_pred             EEECCCCEEEEEcCCCCCCCc--EEEEEECCEEcccC-----------ccEEEEecccccC
Confidence            578999999999987654332  26899998666331           1566666665544

>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A

Probab=94.69  E-value=0.032  Score=34.94  Aligned_cols=68  Identities=12%  Similarity=0.090  Sum_probs=41.2

Q ss_pred             ceeecCeEEEEccCCCC-ccceeEEeEEccCC------eeeecC--------cCCCceEEEcc---Cc--cEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD------VNIYLN--------TDTGGKYVVLS---SG--DLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~-V~d~V~V~SW~~Dd------~~I~p~--------~~~dgKY~vlp---sG--eL~Ir~v~~~   77 (98)
                      .+..|.++.|.|.+.+. ..+. ....|.+..      ..++-.        ....+||.+..   ++  -|.|++++.+
T Consensus         9 ~~~~G~~v~L~C~~~~~~~~~~-~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~   87 (116)
T 3bj9_1            9 SSALGTTIRLTCTLRNDHDIGV-YSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPE   87 (116)
T ss_dssp             EEETTCCEEEEEEECSSSCGGG-CCEEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             EEcCCCcEEEEEEeecCccCCC-ceEEEEEeCCCCCcEEEEEEecCCCceeCccCCCcEEEEecCCCceEEEEECCCChh
Confidence            34589999999997643 1122 236897642      223311        11357888863   35  7999999987


Q ss_pred             cCCcceeeeee
Q psy5692          78 TGNLSVKKMKV   88 (98)
Q Consensus        78 ~~n~~~~~~~~   88 (98)
                      |.  +.=-|.+
T Consensus        88 Ds--G~Y~C~~   96 (116)
T 3bj9_1           88 DE--AMYYCAM   96 (116)
T ss_dssp             GC--EEEEEEE
T ss_pred             HC--EEEEEEE
Confidence            74  3444444

>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...

Probab=94.68  E-value=0.03  Score=35.20  Aligned_cols=68  Identities=19%  Similarity=0.265  Sum_probs=42.8

Q ss_pred             ceeecCeEEEEccCCCCcc----ceeEEeEEccCC------eeeecC----cCCCceEEEccCc---cEEEEeEeeecCC
Q psy5692          18 NVILGNTAVLRCQIPSYMS----EYIIVTSWIQDD------VNIYLN----TDTGGKYVVLSSG---DLYVQIRLSITGN   80 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~----d~V~V~SW~~Dd------~~I~p~----~~~dgKY~vlpsG---eL~Ir~v~~~~~n   80 (98)
                      .|..|.+|.|.|.+.....    +. ....|.+..      ..++..    ....+||.+.+++   .|.|++++.+|. 
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~~~~~-~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds-   89 (114)
T 1eeq_A           12 AVSLGERATINCKSSQSVLDSSNSK-NYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDV-   89 (114)
T ss_dssp             EECTTSCEEEEEEESSCCEETTTTE-ECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC-
T ss_pred             EEcCCCeEEEEEEcCCCccccccCC-ccEEEEEECCCCCCEEEEEecCccCCCCCCCEEEeecCCEEEEEECCCCcccC-
Confidence            4558999999999764432    11 346898753      223321    1236899987543   699999998774 


Q ss_pred             cceeeeee
Q psy5692          81 LSVKKMKV   88 (98)
Q Consensus        81 ~~~~~~~~   88 (98)
                       ..=-|.+
T Consensus        90 -G~Y~C~~   96 (114)
T 1eeq_A           90 -AVYYCQQ   96 (114)
T ss_dssp             -EEEEEEE
T ss_pred             -EEEEEEE
Confidence             3444443

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=94.67  E-value=0.013  Score=41.36  Aligned_cols=68  Identities=12%  Similarity=0.223  Sum_probs=43.0

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-ec---------CcCCCceEEEccCcc-----EEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YL---------NTDTGGKYVVLSSGD-----LYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~p---------~~~~dgKY~vlpsGe-----L~Ir~v~~~   77 (98)
                      .|..|.+++|.|.++.+-... ....|.+..     ..+ +-         .....|||.+..++.     |.|++++.+
T Consensus        34 ~v~~G~~v~L~C~~~~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~  112 (256)
T 3sob_H           34 LVQPGGSLRLSCAASGFTFTN-SYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLRAE  112 (256)
T ss_dssp             EECTTCCEEEEEEEESSCGGG-SCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             EEcCCCCEEEEEEeeccccCC-CEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCCcc
Confidence            567899999999986543222 346787632     122 11         112458999876544     999999988


Q ss_pred             cCCcceeeeee
Q psy5692          78 TGNLSVKKMKV   88 (98)
Q Consensus        78 ~~n~~~~~~~~   88 (98)
                      |.  ..--|.+
T Consensus       113 Ds--G~Y~C~~  121 (256)
T 3sob_H          113 DT--AVYYCAR  121 (256)
T ss_dssp             GC--EEEEEEE
T ss_pred             cC--EEEEEEE
Confidence            75  3444444

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=94.66  E-value=0.02  Score=38.73  Aligned_cols=61  Identities=11%  Similarity=0.205  Sum_probs=39.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-ecCc-----------CCCceEEEccC---c--cEEEEeEe
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLNT-----------DTGGKYVVLSS---G--DLYVQIRL   75 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~p~~-----------~~dgKY~vlps---G--eL~Ir~v~   75 (98)
                      .|..|.+|+|.|.+...-.+. ....|.+++     ..| +...           ...+||.+..+   |  .|.|++++
T Consensus        11 ~~~~G~~v~L~C~~~~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   89 (220)
T 1pz5_B           11 LVQPGGSMKLSCVASGFTFSN-YWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNNLR   89 (220)
T ss_dssp             EECTTCCEEEEEEEESSCGGG-SEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             EEcCCCeEEEEEEEcCCccCC-ccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEccCC
Confidence            567899999999985432122 346898753     112 2111           12589988742   3  89999999


Q ss_pred             eecC
Q psy5692          76 SITG   79 (98)
Q Consensus        76 ~~~~   79 (98)
                      ..|.
T Consensus        90 ~~D~   93 (220)
T 1pz5_B           90 AEDT   93 (220)
T ss_dssp             GGGC
T ss_pred             HHHC
Confidence            8875

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=94.65  E-value=0.018  Score=38.80  Aligned_cols=57  Identities=18%  Similarity=0.191  Sum_probs=40.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc---CccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS---SGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp---sGeL~Ir~v~~~~~   79 (98)
                      .|..|.++.|.|.+...-.   ....|.+++..|.++  ...++.+..   .+.|.|++++..|.
T Consensus        29 ~~~~G~~v~l~C~~~g~p~---p~i~W~~~g~~l~~~--~~~~~~~~~~~~~~~L~i~~~~~~d~   88 (215)
T 3mtr_A           29 YTWEGNQVNITCEVFAYPS---ATISWFRDGQLLPSS--NYSNIKIYNTPSASYLEVTPDSENDF   88 (215)
T ss_dssp             EECTTCCEEEEEEEEEESC---CEEEEEETTEESSCS--SSCSEEEEEETTEEEEEECCCSGGGC
T ss_pred             EEECCCCEEEEEEEeecCC---CEEEEEECCeECCCC--CCccEEEecCCCeeEEEEecCChhhC
Confidence            6778999999998643322   256899999766432  235666653   67899998887764

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=94.64  E-value=0.022  Score=39.16  Aligned_cols=69  Identities=14%  Similarity=0.215  Sum_probs=42.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC--e---ee-ecCc---------CCCceEEEcc-----CccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NI-YLNT---------DTGGKYVVLS-----SGDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd--~---~I-~p~~---------~~dgKY~vlp-----sGeL~Ir~v~~~   77 (98)
                      .|..|.++.|.|.+...-... ....|.+++  .   .| +...         ...+||.+..     ++.|.|++++.+
T Consensus       138 ~v~~G~~v~L~C~~~~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~  216 (247)
T 1svz_A          138 LKKPGETVKISCKATNYAFTD-YSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNE  216 (247)
T ss_dssp             EECTTCCEEEEEEEESSCGGG-SCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eecCCCcEEEEEEEcCcccCC-cEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChh
Confidence            467899999999986542111 235898853  1   11 1111         1257888864     358999999988


Q ss_pred             cCCcceeeeeeh
Q psy5692          78 TGNLSVKKMKVE   89 (98)
Q Consensus        78 ~~n~~~~~~~~~   89 (98)
                      |.  ..-.|.+.
T Consensus       217 Ds--G~Y~C~a~  226 (247)
T 1svz_A          217 DT--ATYFCVRD  226 (247)
T ss_dssp             GC--EEEEEEEE
T ss_pred             HC--EEEEEEEe
Confidence            75  34445443

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=94.62  E-value=0.033  Score=38.16  Aligned_cols=59  Identities=20%  Similarity=0.241  Sum_probs=39.7

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEcc--CCe----eeecC----cCCCceEEEccCc---cEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQ--DDV----NIYLN----TDTGGKYVVLSSG---DLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~--Dd~----~I~p~----~~~dgKY~vlpsG---eL~Ir~v~~~~~   79 (98)
                      .|..|.++.|.|.+...-..   ...|.+  ++.    .++..    ....+||.+..++   .|.|++++.+|.
T Consensus       146 ~v~~G~~v~L~C~~~~~~~~---~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~  217 (247)
T 2ghw_B          146 SLSPGERATLSCRASQSVRS---NLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDF  217 (247)
T ss_dssp             EECTTSCEEEEEEESSCCTT---CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGC
T ss_pred             EecCCCcEEEEEEeCCCccc---eEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHC
Confidence            46789999999998655433   578988  332    12211    1235789886543   599999998874

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=94.62  E-value=0.02  Score=38.16  Aligned_cols=60  Identities=18%  Similarity=0.206  Sum_probs=37.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccC---C--e-eeecCc--------CCCceEEEcc---CccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQD---D--V-NIYLNT--------DTGGKYVVLS---SGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~D---d--~-~I~p~~--------~~dgKY~vlp---sGeL~Ir~v~~~~~   79 (98)
                      .|..|.+++|.|.+...-  -.....|.+.   .  . .++...        ...+||.+..   ++.|.|++++.+|.
T Consensus        11 ~v~~G~~v~L~C~~~~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   87 (218)
T 3s96_B           11 SFSLGASAKLTCTLNSQH--STYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPEDE   87 (218)
T ss_dssp             EEETTSCEEEEEEECGGG--TTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EECCCCcEEEEEECCCCC--CCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCCcccC
Confidence            456899999999986441  1234578772   2  1 222111        1346888765   44599999988775

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=94.61  E-value=0.025  Score=39.37  Aligned_cols=69  Identities=14%  Similarity=0.172  Sum_probs=43.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC------eeeecCc--------C-CCceEEEcc-----CccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIYLNT--------D-TGGKYVVLS-----SGDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd------~~I~p~~--------~-~dgKY~vlp-----sGeL~Ir~v~~~   77 (98)
                      .|..|.+|.|.|.+...-.. .....|++.+      ..+|...        . ..|||.+..     ++.|.|++++.+
T Consensus        12 ~~~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   90 (242)
T 1hxm_B           12 TKTLSKTARLECVVSGITIS-ATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQ   90 (242)
T ss_dssp             EEETTCCEEEEEEEESSCTT-TSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCGG
T ss_pred             EecCCCcEEEEEEeCCcccc-CceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECCCCcc
Confidence            45689999999997543112 1347898742      1222211        1 468998873     357999999988


Q ss_pred             cCCcceeeeeeh
Q psy5692          78 TGNLSVKKMKVE   89 (98)
Q Consensus        78 ~~n~~~~~~~~~   89 (98)
                      |.  ..-.|.+.
T Consensus        91 D~--G~Y~C~~~  100 (242)
T 1hxm_B           91 DI--ATYYCALW  100 (242)
T ss_dssp             GC--EEEEEEEE
T ss_pred             cC--EEEEEeee
Confidence            75  45555554

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=94.60  E-value=0.016  Score=40.32  Aligned_cols=59  Identities=19%  Similarity=0.294  Sum_probs=39.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccC---C---eeeecC----cCCCceEEEccCcc---EEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQD---D---VNIYLN----TDTGGKYVVLSSGD---LYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~D---d---~~I~p~----~~~dgKY~vlpsGe---L~Ir~v~~~~~   79 (98)
                      .|..|.+++|.|.+......   ...|+++   .   ..++..    ....+||.+..+|.   |.|++++.+|.
T Consensus       149 ~v~~G~~v~L~C~~~~~~~~---~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~  220 (256)
T 3umt_A          149 SASLGERVSITCRASQDIGS---NLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDF  220 (256)
T ss_dssp             EECTTCCEEEEEEESSCCTT---CEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             EEECCCCEEEEEEEecCCCc---EEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHC
Confidence            57789999999998664443   5679873   2   122211    11357888876554   99999988874

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=94.60  E-value=0.018  Score=37.09  Aligned_cols=59  Identities=14%  Similarity=0.236  Sum_probs=39.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC------eeeecCc----CCCceEEEcc---CccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIYLNT----DTGGKYVVLS---SGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd------~~I~p~~----~~dgKY~vlp---sGeL~Ir~v~~~~~   79 (98)
                      .|..|.+|+|.|.+......   ...|.+..      ..|+...    ...+||.+..   ++.|.|++++.+|.
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~---~v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~Ds   83 (120)
T 1mqk_L           12 SASVGETVTITCRASENIYS---YLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDF   83 (120)
T ss_dssp             EECTTCCEEEEEEESSCCTT---CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEcCCCcEEEEEEeCCCCCc---eEEEEEECCCCCCEEEEEeCCcCCCCCCceEEEeccCCEEEEEECCCCHHHC
Confidence            45689999999998654422   35798753      1233211    2368998864   35799999998763

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=94.59  E-value=0.021  Score=37.11  Aligned_cols=57  Identities=21%  Similarity=0.238  Sum_probs=36.7

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEc-cC--ccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL-SS--GDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vl-ps--GeL~Ir~v~~~~~   79 (98)
                      .+..|.++.|.|.+...-.   ....|.+++..|.+...  .++.+. ..  +.|.|.+++..|.
T Consensus        16 ~v~~G~~v~l~C~~~~~p~---~~v~W~~~~~~~~~~~~--~~~~~~~~~~~~~L~i~~~~~~d~   75 (194)
T 2a38_A           16 VVLEGSTATFEAHISGFPV---PEVSWFRDGQVISTSTL--PGVQISFSDGRAKLTIPAVTKANS   75 (194)
T ss_dssp             EEETTSCEEEEEEEEEESC---CEEEEEESSSBCCTTTS--TTCEEEEETTEEEEEESSCCGGGC
T ss_pred             EEECCCEEEEEEEEEecCC---CEEEEEECCEEcccccC--CceEEEeCCCEEEEEECCCCcccC
Confidence            6778999999999743222   24789999876644321  233332 23  3688888877664

>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system; 1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N

Probab=94.59  E-value=0.026  Score=36.98  Aligned_cols=66  Identities=17%  Similarity=0.202  Sum_probs=41.7

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eeeecCcCCCceEEEc--c---CccEEEEeEeeecCCcceeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYLNTDTGGKYVVL--S---SGDLYVQIRLSITGNLSVKKMK   87 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I~p~~~~dgKY~vl--p---sGeL~Ir~v~~~~~n~~~~~~~   87 (98)
                      .|..|.++.|.|.+....-.. ....|.+..     ..++.   .++||.+.  +   +..|.|++++.+|.  ++=-|.
T Consensus        11 ~v~~G~~vtL~C~~s~~~~~~-~~v~Wyrq~~g~~~~~~~~---~~~R~~~~~~~~~~~~~L~I~~~~~~Ds--G~Y~C~   84 (121)
T 2i24_N           11 TKETGESLTINCVVRDSRCVL-STGYWYRKPPGSRNEESIS---DGGRYVETVNRGSKSFSLRINDLTVKDS--GTYRCK   84 (121)
T ss_dssp             EEETTCCEEEEEEECSCCCCE-EEEEEEEECTTCSCCEEEC---SBTTEEEEEETTTTEEEEEECSCCGGGC--EEEEEE
T ss_pred             EEecCCcEEEEeEccCCCCCC-CEEEEEEeCCCCCceeeEe---cCCCeEEEecCCCCEEEEEECCCChhhC--EEEEEE
Confidence            345899999999985432122 356998864     11221   35788763  2   45699999998763  455555


Q ss_pred             eh
Q psy5692          88 VE   89 (98)
Q Consensus        88 ~~   89 (98)
                      +.
T Consensus        85 ~~   86 (121)
T 2i24_N           85 PE   86 (121)
T ss_dssp             EE
T ss_pred             Ee
Confidence            54

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=94.58  E-value=0.016  Score=40.37  Aligned_cols=54  Identities=7%  Similarity=-0.051  Sum_probs=35.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      .|..|.+++|.|.....-  . ....|.+|+..+.+     .+....++|.|.|.+|+.+|.
T Consensus       116 ~v~~G~~v~L~C~~~~~~--~-~~~~W~k~g~~~~~-----~~~~~~~~~~L~I~~v~~~D~  169 (218)
T 1uct_A          116 VLMPGENISLTCSSAHIP--F-DRFSLAKEGELSLP-----QHQSGEHPANFSLGPVDLNVS  169 (218)
T ss_dssp             EECTTCCCEEEEECSSSC--C-SEEEEEETTCSSCC-----SEEECSSSEEEECCSCCGGGC
T ss_pred             ccCCCCCEEEEEeCCCCC--C-CEEEEEECCCcccc-----cccCCCccCEEEEccCCcccC
Confidence            678999999999433221  2 24689999865432     233344678888888877664

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=94.57  E-value=0.046  Score=37.59  Aligned_cols=47  Identities=13%  Similarity=0.142  Sum_probs=31.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~   78 (98)
                      .+-.|.+++|.|.+|      ....+|++|+..|....        ..++.|.|.+++..|
T Consensus        14 ~~~~G~~v~L~C~~p------~~~i~W~k~g~~l~~~~--------~~~~~L~i~~v~~~D   60 (204)
T 1sy6_A           14 DYQEDGSVLLTCDAE------AKNITWFKDGKMIGFLT--------EDKKKWNLGSNAKDP   60 (204)
T ss_dssp             CCCSSSEEEEEECSC------SSEEEEEETTEEEEEEE--------SSCCCEEEEEGGGCC
T ss_pred             eecCCCeEEEEEcCC------CCEEEEEECCEECCCCC--------CCCCeEEeCCCCcCC
Confidence            345799999999984      13578999986664321        145667777766554

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=94.57  E-value=0.014  Score=40.52  Aligned_cols=68  Identities=10%  Similarity=0.024  Sum_probs=42.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-e--c-------CcCCCceEEEccCcc-----EEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-Y--L-------NTDTGGKYVVLSSGD-----LYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~--p-------~~~~dgKY~vlpsGe-----L~Ir~v~~~   77 (98)
                      .|..|.+++|.|.+..+-... ....|++..     ..| +  .       .....|||.+..++.     |.|++++.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~-~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   89 (226)
T 3mlr_H           11 VKQPGQSLKISCKSSGYNFLD-SWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTLQAS   89 (226)
T ss_dssp             EECTTCCEEEEEEEESSCGGG-SCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSCCGG
T ss_pred             EEecCCCEEEEEEecCccccC-CEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCCCcc
Confidence            466899999999986442222 346787632     122 1  1       112358999875544     999999988


Q ss_pred             cCCcceeeeee
Q psy5692          78 TGNLSVKKMKV   88 (98)
Q Consensus        78 ~~n~~~~~~~~   88 (98)
                      |.  +.--|.+
T Consensus        90 Ds--G~Y~C~~   98 (226)
T 3mlr_H           90 DT--GKYFCTR   98 (226)
T ss_dssp             GC--EEEEEEE
T ss_pred             cC--EEEEEeE
Confidence            74  4444443

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=94.55  E-value=0.027  Score=39.33  Aligned_cols=69  Identities=10%  Similarity=0.073  Sum_probs=42.8

Q ss_pred             ceeecCeEEEEccCCCCccc-eeEEeEEccCC-----eee---e-----cC-------cCCCceEEEccCcc-----EEE
Q psy5692          18 NVILGNTAVLRCQIPSYMSE-YIIVTSWIQDD-----VNI---Y-----LN-------TDTGGKYVVLSSGD-----LYV   71 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d-~V~V~SW~~Dd-----~~I---~-----p~-------~~~dgKY~vlpsGe-----L~I   71 (98)
                      .|..|.+|.|.|.+..+-.+ -.....|++..     ..|   +     +.       ....|||.+..++.     |.|
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   90 (239)
T 3tv3_H           11 LVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLVFLKL   90 (239)
T ss_dssp             EECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEEEEEE
T ss_pred             EEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEEEEEE
Confidence            46689999999998654322 01246887632     222   1     01       12358999875443     999


Q ss_pred             EeEeeecCCcceeeeee
Q psy5692          72 QIRLSITGNLSVKKMKV   88 (98)
Q Consensus        72 r~v~~~~~n~~~~~~~~   88 (98)
                      ++++.+|.  +.--|.+
T Consensus        91 ~~v~~~Ds--G~Y~C~~  105 (239)
T 3tv3_H           91 NSVTAADT--ATYYCAR  105 (239)
T ss_dssp             CSCCGGGC--EEEEEEE
T ss_pred             CCCChhhC--EEEEEEE
Confidence            99998885  4444544

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=94.54  E-value=0.024  Score=36.78  Aligned_cols=61  Identities=10%  Similarity=0.016  Sum_probs=41.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+..|.++.|.|.+..+-.   ...+|.+++..+.+     +......++.|.|.+++.+|.  ..-.|.+
T Consensus       124 ~~~~g~~~~l~C~~~g~p~---p~v~W~~~~~~~~~-----~~~~~~~~~~L~i~~v~~~d~--G~Y~C~a  184 (201)
T 3s97_C          124 YALMGQNVTLECFALGNPV---PDIRWRKVLEPMPS-----TAEISTSGAVLKIFNIQLEDE--GIYECEA  184 (201)
T ss_dssp             EEETTCCEEEEEEEEEESC---CEEEEEETTBCCCT-----TCEEETTTTEEEECSCCGGGC--EEEEEEE
T ss_pred             EEecCCcEEEEEEccCCCC---CceEEEeCCCcCCC-----ceeecCCCCEEEEccCChhhC--EEEEEEE
Confidence            6789999999998743322   24689999875532     344445678899999887763  3444544

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=94.54  E-value=0.043  Score=35.81  Aligned_cols=66  Identities=21%  Similarity=0.353  Sum_probs=43.4

Q ss_pred             ceeecCeEEEEcc-CCCCccceeEEeEEccCCe-eeecCcC-----CCceEEEc-cCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQ-IPSYMSEYIIVTSWIQDDV-NIYLNTD-----TGGKYVVL-SSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~-IPs~V~d~V~V~SW~~Dd~-~I~p~~~-----~dgKY~vl-psGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+..|.++.|.|. +..+-..   ..+|.+++. .|.....     ..++|.+. .++.|.|++++.+|.-  .-.|.+
T Consensus       115 ~~~~g~~~~l~C~~~~~~p~~---~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G--~Y~C~a  188 (212)
T 1f97_A          115 SVTIGNRAVLTCSEHDGSPPS---EYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSG--EYYCQA  188 (212)
T ss_dssp             EEETTSCEEEEEECSCCBSCC---EEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCE--EEEEEE
T ss_pred             ccCCCCeEEEEEEcccCcCCC---EEEEEeCCcccccccccccccccCceeEecCCCceEEEEecChhhCc--EEEEEE
Confidence            4678999999999 4433222   468999997 7644221     12567774 5889999998887753  445544

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=94.53  E-value=0.024  Score=38.94  Aligned_cols=69  Identities=13%  Similarity=0.134  Sum_probs=42.0

Q ss_pred             ceeecCeEEEEccCCCC-ccceeEEeEEccCC-----eee---ecC---------cCCCceEEEccCc-----cEEEEeE
Q psy5692          18 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD-----VNI---YLN---------TDTGGKYVVLSSG-----DLYVQIR   74 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~-V~d~V~V~SW~~Dd-----~~I---~p~---------~~~dgKY~vlpsG-----eL~Ir~v   74 (98)
                      .|..|.+|+|.|.+..+ .........|++..     ..+   ++.         ....|||.+..++     .|.|+++
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   90 (232)
T 3qhz_H           11 LVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTMTNM   90 (232)
T ss_dssp             EECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             EECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEECcC
Confidence            46689999999998543 22232334787632     222   111         1234799987544     3999999


Q ss_pred             eeecCCcceeeeee
Q psy5692          75 LSITGNLSVKKMKV   88 (98)
Q Consensus        75 ~~~~~n~~~~~~~~   88 (98)
                      +.+|.  ..-.|.+
T Consensus        91 ~~~Ds--G~Y~C~~  102 (232)
T 3qhz_H           91 DPVDT--ATYYCAR  102 (232)
T ss_dssp             CGGGC--EEEEEEE
T ss_pred             ChhhC--EEEEEEE
Confidence            98875  3444444

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=94.47  E-value=0.057  Score=34.69  Aligned_cols=60  Identities=17%  Similarity=0.240  Sum_probs=38.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC----eeeecCcC-CCceEEEc--------cCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD----VNIYLNTD-TGGKYVVL--------SSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd----~~I~p~~~-~dgKY~vl--------psGeL~Ir~v~~~~~   79 (98)
                      .|..|.+|+|.|.+.+....  ....|.+..    ..|+.... ..+|+...        .++.|.|++++.+|.
T Consensus        14 ~v~~G~~vtL~C~~~~~~~~--~~v~W~r~~~~~~~li~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~Ds   86 (127)
T 2jju_A           14 SVAAGESATLRCAMTSLIPV--GPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPADA   86 (127)
T ss_dssp             EEETTSCEEECCEESCCCSC--CCEEEEECSSTTCEEEEESSSSCCTTEEEC-------CCBCCEEECSCCGGGC
T ss_pred             EEeCCCCEEEEEEEeCCCCC--CEEEEEecCCCCcEEEEECCCCccCcEEeeEeeeecCCCEEEEEECCCCHHHC
Confidence            45689999999998654322  347898875    23444211 12466542        156799999998764

>3iu4_H CHP3 FAB heavy chain; antibody, ganglioside, idiotype, immune system; 1.75A {Mus musculus} PDB: 1ibg_H* 3iy6_B

Probab=94.47  E-value=0.018  Score=41.50  Aligned_cols=68  Identities=6%  Similarity=0.102  Sum_probs=42.7

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-ecCc--------CCCceEEEccCcc-----EEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLNT--------DTGGKYVVLSSGD-----LYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~p~~--------~~dgKY~vlpsGe-----L~Ir~v~~~~   78 (98)
                      .|..|.+|+|.|.+..+-... ....|++..     ..| +-..        ...|||.+..++.     |.|++++.+|
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~-~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D   89 (263)
T 3iu4_H           11 LVAPSQSLSITCTVSGFSLSR-YSVHWVRQPPGKGLEWLGMIWGGGSTDYNSALKSRLSISKDNSKSQVFLKMNSLQTDD   89 (263)
T ss_dssp             EECTTSCEEEEEEEESSCGGG-SCEEEEEECTTSCCEEEEEECTTSCEEECGGGTTCEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             EEcCCCCEEEEEEeccccCCc-eEEEEEEECCCCCcEEEEEEeCCCcEeeCcccCCCEEEEecCCCCEEEEEECCCCHHH
Confidence            567899999999986432222 345787632     222 2111        2358999876544     9999999888


Q ss_pred             CCcceeeeee
Q psy5692          79 GNLSVKKMKV   88 (98)
Q Consensus        79 ~n~~~~~~~~   88 (98)
                      .  +.-.|.+
T Consensus        90 s--G~Y~C~~   97 (263)
T 3iu4_H           90 T--AMYYCAR   97 (263)
T ss_dssp             C--EEEEEEE
T ss_pred             C--EEEEEEE
Confidence            4  4444444

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=94.47  E-value=0.016  Score=38.59  Aligned_cols=28  Identities=25%  Similarity=0.204  Sum_probs=21.0

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCe
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDV   49 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~   49 (98)
                      .|..|.+++|.|..+.-    .....|.+++.
T Consensus        18 ~v~~G~~v~L~C~~~~~----~~~~~W~k~g~   45 (184)
T 2gi7_A           18 LVPLEKPVTLRCQGPPG----VDLYRLEKLSS   45 (184)
T ss_dssp             EEETTCCEEEEEECSTT----CSEEEEEETTT
T ss_pred             cccCCCcEEEEEeCCCC----CCEEEEEECCc
Confidence            57899999999998652    12467988863

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=94.46  E-value=0.042  Score=37.32  Aligned_cols=69  Identities=16%  Similarity=0.151  Sum_probs=43.7

Q ss_pred             ceeecCeEEEEccCCCCccc-eeEEeEEccCC-----e-eeecC----cCCCceEEEccCc---cEEEEeEeeecCCcce
Q psy5692          18 NVILGNTAVLRCQIPSYMSE-YIIVTSWIQDD-----V-NIYLN----TDTGGKYVVLSSG---DLYVQIRLSITGNLSV   83 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d-~V~V~SW~~Dd-----~-~I~p~----~~~dgKY~vlpsG---eL~Ir~v~~~~~n~~~   83 (98)
                      .|..|.+++|.|.+...-.+ -.....|.+++     . .++..    ....+||.+..+|   .|.|++++.+|.  ..
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~--G~   89 (240)
T 1moe_A           12 AVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDV--AT   89 (240)
T ss_dssp             EECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC--EE
T ss_pred             EecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChhhC--EE
Confidence            46689999999998654310 03446898752     1 22211    1236799997655   699999998774  34


Q ss_pred             eeeee
Q psy5692          84 KKMKV   88 (98)
Q Consensus        84 ~~~~~   88 (98)
                      -.|.+
T Consensus        90 Y~C~~   94 (240)
T 1moe_A           90 YYCQQ   94 (240)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44544

>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor, IG-like domain, immune system; 1.00A {Mus musculus} PDB: 2icc_A 2ice_S* 2icf_S*

Probab=94.42  E-value=0.088  Score=33.31  Aligned_cols=69  Identities=12%  Similarity=0.110  Sum_probs=42.0

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCC----eee--e-cCc------CCCceEEEcc----CccEEEEeEeeecCCc
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD----VNI--Y-LNT------DTGGKYVVLS----SGDLYVQIRLSITGNL   81 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd----~~I--~-p~~------~~dgKY~vlp----sGeL~Ir~v~~~~~n~   81 (98)
                      +..|.+|+|.|.+.+..........|.+..    ..|  + ++.      ...||+.+..    +..|.|++++.+|.  
T Consensus        13 ~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~--   90 (119)
T 2pnd_A           13 GTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHKVPGDVSLQINTLQMDDR--   90 (119)
T ss_dssp             EETTSCEEECCBCCCCTTCEEEEEEEEEEETTEEEEEEEEETTEEECCSGGGTTTEEECCSSTTBCCEEESSCCGGGC--
T ss_pred             EEcCCcEEEEEEEcCCCCCCceEEEEEEeCCCCceEEEEEcCCCceeecccccCcEEEccCCCCCEEEEEccCCcccC--
Confidence            457999999999865322222346788642    222  2 111      1257777652    45699999999885  


Q ss_pred             ceeeeeeh
Q psy5692          82 SVKKMKVE   89 (98)
Q Consensus        82 ~~~~~~~~   89 (98)
                      ..=.|.+.
T Consensus        91 G~Y~C~v~   98 (119)
T 2pnd_A           91 NHYTCEVT   98 (119)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            44556553

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=94.41  E-value=0.028  Score=38.99  Aligned_cols=57  Identities=11%  Similarity=0.025  Sum_probs=38.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccC----ccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS----GDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlps----GeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .|..|.++.|.|.+...       .+|.+++..+      ..++....+    +.|.|.+++.+|.  ..-.|...
T Consensus        11 ~v~~G~~v~L~C~~~~~-------v~W~~~~~~~------~~~~~~~~~~~~~~~L~i~~~~~~D~--G~Y~C~a~   71 (289)
T 3mjg_X           11 VLNVSSTFVLTCSGSAP-------VVWERMSQEP------PQEMAKAQDGTFSSVLTLTNLTGLDT--GEYFCTHN   71 (289)
T ss_dssp             ECCTTCCEEEEEEESSC-------CEEEBTTBCC------SEEEEECTTSCEEEEEEECSCCGGGC--EEEEEECC
T ss_pred             EEeCCCcEEEEEeccce-------EEEECCCCCc------ccceeccCCCceeEEEEEccCChhhC--EEEEEEEc
Confidence            35689999999998754       7899998554      234444443    4788888887764  34555543

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=94.40  E-value=0.019  Score=41.81  Aligned_cols=69  Identities=16%  Similarity=0.193  Sum_probs=43.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC--ee----eec---------CcCCCceEEEccC-----ccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VN----IYL---------NTDTGGKYVVLSS-----GDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd--~~----I~p---------~~~~dgKY~vlps-----GeL~Ir~v~~~   77 (98)
                      .|..|.+|+|.|.+...-.. .....|++++  ..    ++.         .....+||.+..+     +.|.|++++.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~-~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   89 (344)
T 1za6_B           11 VVKPGASVKISCKASGYTFT-DHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSLRSE   89 (344)
T ss_dssp             EECTTCCEEEEEEEESSCTT-SSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EEeCCCcEEEEEEcCCcccc-ccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCCCcc
Confidence            46789999999998543111 1237898762  11    111         1124689998753     57999999987


Q ss_pred             cCCcceeeeeeh
Q psy5692          78 TGNLSVKKMKVE   89 (98)
Q Consensus        78 ~~n~~~~~~~~~   89 (98)
                      |.  ..-.|.+.
T Consensus        90 D~--G~Y~C~~~   99 (344)
T 1za6_B           90 DT--AVYFCTRS   99 (344)
T ss_dssp             GC--EEEEEEET
T ss_pred             cC--EEEEEEEe
Confidence            75  34445443

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=94.40  E-value=0.0058  Score=43.63  Aligned_cols=53  Identities=11%  Similarity=-0.031  Sum_probs=34.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      .|..|.+++|.|.++..    .....|.+|+..+.+.     ......+|.|.|++++.+|.
T Consensus        34 ~v~~G~~v~L~C~~~~~----~~~~~W~k~g~~~~~~-----~~~~~~~~~L~I~~v~~~D~   86 (316)
T 3vh8_G           34 VVPRGGHVTLRCHYRHR----FNNFMLYKEDRIHIPI-----FHGRIFQESFNMSPVTTAHA   86 (316)
T ss_dssp             EEETTSCEEEEEEBTTB----CCSEEEEESSCSSSCH-----HHHCCBSSCEEECSCCGGGC
T ss_pred             ccCCCCCEEEEEEccCC----CceEEEEeCCCcccee-----ecCCcceEEEEECCCCcccC
Confidence            67799999999999866    2445699998554331     11112366777777666553

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=94.39  E-value=0.012  Score=38.38  Aligned_cols=61  Identities=15%  Similarity=0.144  Sum_probs=39.1

Q ss_pred             ceeecCeEEEEccCC-CCccceeEEeEEccCC--eeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIP-SYMSEYIIVTSWIQDD--VNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IP-s~V~d~V~V~SW~~Dd--~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+..|.++.|.|.++ .+-.   ...+|.+++  ..+ +    .+.+....+|.|.|.+++.+|.  ..-.|.+
T Consensus       132 ~~~~g~~v~l~C~~~~g~p~---~~v~W~~~~~~~~~-~----~~~~~~~~~~~L~i~~~~~~d~--G~Y~C~a  195 (214)
T 3jz7_A          132 SEEIGNDFKLKCEPKEGSLP---LQFEWQKLSDSQTM-P----TPWLAEMTSPVISVKNASSEYS--GTYSCTV  195 (214)
T ss_dssp             CCBTTCCEEEEEECSBCCSS---CEEEEEECSTTCCC-C----GGGGGGTTSSEEEECSCCGGGC--EEEEEEE
T ss_pred             ceecCCcEEEEecCCCCCCC---CEEEEEECCCCCcc-C----ccceeccCCCEEEEecCCHHHC--EEEEEEE
Confidence            577899999999983 3322   346899964  333 2    2344445677888888887773  3444543

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=94.39  E-value=0.02  Score=46.18  Aligned_cols=51  Identities=22%  Similarity=0.432  Sum_probs=40.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEe
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRL   75 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~   75 (98)
                      .+..|.++.|.|.+..+-   ....+|.+|+..+.    .+.++.+.++|.|.|.++.
T Consensus       537 ~v~~G~~v~l~C~~~g~p---~~~i~W~k~~~~l~----~~~~~~~~~~~~l~i~~v~  587 (816)
T 3dmk_A          537 AIVAGETLIVTCPVAGYP---IDSIVWERDNRALP----INRKQKVFPNGTLIIENVE  587 (816)
T ss_dssp             EEETTCCEEEECCEECSS---EEEEEEEETTEESC----CSTTEEECTTSEEEESSCC
T ss_pred             EEecCCeEEEEEEecCCC---CCEEEEEECCeEcc----cCCceEEecCCeEEEEecC
Confidence            677899999999986543   23678999997663    3578888999999999986

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=94.39  E-value=0.06  Score=37.13  Aligned_cols=61  Identities=21%  Similarity=0.161  Sum_probs=39.7

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----ee-eecCc----CCCceEEEccCc---cEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VN-IYLNT----DTGGKYVVLSSG---DLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~-I~p~~----~~dgKY~vlpsG---eL~Ir~v~~~~~   79 (98)
                      .|..|.+++|.|.++..-.. .....|.+++     .. ++...    ...+||.+..+|   .|.|++++.+|.
T Consensus        13 ~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds   86 (256)
T 3ux9_B           13 SGAPGQRVTISCSGSSSNIG-SNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDE   86 (256)
T ss_dssp             EECTTCCEEEEEECCTTTTT-TSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             EEcCCCcEEEEEecCCCCCC-CceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhC
Confidence            45689999999998653111 1246798742     22 22111    135799987655   699999998875

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=94.38  E-value=0.046  Score=37.90  Aligned_cols=68  Identities=10%  Similarity=0.062  Sum_probs=42.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC------eeeecCc--------CCCceEEEcc-Cc----cEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIYLNT--------DTGGKYVVLS-SG----DLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd------~~I~p~~--------~~dgKY~vlp-sG----eL~Ir~v~~~~   78 (98)
                      .|..|.+|.|.|.+...-.. .....|++..      ..+|-..        ...+||.+.. .|    -|.|++++.+|
T Consensus        12 ~~~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   90 (230)
T 1ypz_F           12 SRPRDETAQISCKVFIESFR-SVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEED   90 (230)
T ss_dssp             EEETTSCEEEEEEECCGGGG-GCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGGG
T ss_pred             EEeCCCcEEEEEEeeccccC-ccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECcCChhh
Confidence            35589999999998654212 2347898743      1223211        1468999873 32    69999999877


Q ss_pred             CCcceeeeee
Q psy5692          79 GNLSVKKMKV   88 (98)
Q Consensus        79 ~n~~~~~~~~   88 (98)
                      .  ..--|.+
T Consensus        91 ~--G~Y~C~~   98 (230)
T 1ypz_F           91 E--AIYYCSY   98 (230)
T ss_dssp             C--SEEEEEE
T ss_pred             C--EEEEEEE
Confidence            5  3334444

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=94.37  E-value=0.046  Score=38.39  Aligned_cols=58  Identities=12%  Similarity=0.146  Sum_probs=39.3

Q ss_pred             ceeecCeEEEEccCCCCcc---ceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMS---EYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~---d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      .+..|.++.|.|.+..+..   .=....+|.+++..|.+   ...++ ...+|.|.|++++.+|.
T Consensus       114 ~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~---~~~~~-~~~~~~L~i~~v~~~d~  174 (315)
T 1itb_B          114 KLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLL---DNIHF-SGVKDRLIVMNVAEKHR  174 (315)
T ss_dssp             EEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCC---CSSSE-EEETTEEEESSCCGGGC
T ss_pred             EEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCC---ccceE-eecCceEEEEeceehhC
Confidence            5678999999999832221   11234789999977754   23344 45688999998887764

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=94.36  E-value=0.029  Score=36.67  Aligned_cols=48  Identities=13%  Similarity=0.214  Sum_probs=30.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~   78 (98)
                      .|..|.++.|.|.+...-..  ...+|.+++..+..           .++.|.|.+++.+|
T Consensus        15 ~v~~G~~v~L~C~~~~~~~~--~~i~W~~~~~~~~~-----------~~~~L~i~~v~~~d   62 (176)
T 1f2q_A           15 RIFKGENVTLTCNGNNFFEV--SSTKWFHNGSLSEE-----------TNSSLNIVNAKFED   62 (176)
T ss_dssp             EEETTCCEEEECCTTCC------CCEEEETTEECSC-----------CSSEEEECSCCGGG
T ss_pred             ceecCCcEEEEEeCCCCCCc--ceEEEEECCeECCC-----------CceEEEEeccceec
Confidence            57799999999998765432  23589998855421           14556666655544

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=94.33  E-value=0.041  Score=38.11  Aligned_cols=61  Identities=16%  Similarity=0.082  Sum_probs=39.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee---ec------CcCCCceEEEccCc-----cEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI---YL------NTDTGGKYVVLSSG-----DLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I---~p------~~~~dgKY~vlpsG-----eL~Ir~v~~~~   78 (98)
                      .|..|.+++|.|.+..+... .....|.+.+     ..+   ++      .....+||.+..++     .|.|++++.+|
T Consensus        19 ~v~~G~~v~L~C~~~~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D   97 (257)
T 3gkz_A           19 LVKPSQTLSLTCSVTGDSVT-SGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSVSSED   97 (257)
T ss_dssp             EECTTCCEEEEEEEEESCCS-SCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             EEcCCCcEEEEEEEEccccc-ceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCCChhh
Confidence            56789999999997643211 1345787632     111   11      11245799998644     59999999887


Q ss_pred             C
Q psy5692          79 G   79 (98)
Q Consensus        79 ~   79 (98)
                      .
T Consensus        98 s   98 (257)
T 3gkz_A           98 T   98 (257)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=94.32  E-value=0.0091  Score=39.82  Aligned_cols=53  Identities=8%  Similarity=-0.007  Sum_probs=32.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEE--ccCccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV--LSSGDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~v--lpsGeL~Ir~v~~~~   78 (98)
                      .|..|.+++|.|.++.-    .....|.+++..+.+.    .+...  ..+|.|.|.+++.+|
T Consensus        15 ~v~~G~~v~L~C~~~~~----~~~~~w~k~g~~~~~~----~~~~~~~~~~~~L~i~~v~~~D   69 (196)
T 3p2t_A           15 VISWGNSVTIWCQGTLE----AREYRLDKEESPAPWD----RQNPLEPKNKARFSIPSMTEDY   69 (196)
T ss_dssp             EEETTCCEEEEEECCTT----CCEEEEEETTSCSCSE----EECCCSSSSEEEEEESSCCGGG
T ss_pred             cCCCCCcEEEEeeCCCC----CCEEEEEECCCCCccc----ccccccCCceEEEEeccCCccc
Confidence            57789999999998752    2356788887544221    11111  234667776666554

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=94.32  E-value=0.017  Score=39.69  Aligned_cols=62  Identities=10%  Similarity=0.084  Sum_probs=40.5

Q ss_pred             ceeecCeEEEEccCCCCccce-eEEeEEccCC------eeeecC--------cCCCceEEEcc-----CccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEY-IIVTSWIQDD------VNIYLN--------TDTGGKYVVLS-----SGDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~-V~V~SW~~Dd------~~I~p~--------~~~dgKY~vlp-----sGeL~Ir~v~~~   77 (98)
                      .|..|.+|+|.|.+..+-... ....+|++++      ..++..        ....|||.+..     ++.|.|++++.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   90 (228)
T 3bae_H           11 LLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSVDTA   90 (228)
T ss_dssp             EECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSCCGG
T ss_pred             eecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCCCcc
Confidence            567999999999986443211 1456898742      112211        12358999874     368999999988


Q ss_pred             cC
Q psy5692          78 TG   79 (98)
Q Consensus        78 ~~   79 (98)
                      |.
T Consensus        91 D~   92 (228)
T 3bae_H           91 DT   92 (228)
T ss_dssp             GC
T ss_pred             cC
Confidence            75

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=94.31  E-value=0.011  Score=38.65  Aligned_cols=62  Identities=13%  Similarity=0.131  Sum_probs=41.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc---CccEEEEe-EeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS---SGDLYVQI-RLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp---sGeL~Ir~-v~~~~~n~~~~~~~~   88 (98)
                      .+..|.++.|.|.+..+-.   ...+|.+++..|.+    +++|.+..   .+.|.|.+ ++..|.-  .-.|.+
T Consensus       115 ~~~~g~~~~l~C~~~g~p~---p~i~W~~~~~~~~~----~~~~~~~~~~~~~~L~i~~~~~~~d~G--~Y~C~a  180 (197)
T 2j8h_A          115 HALRGEVVSIKIPFSGKPD---PVITWQKGQDLIDN----NGHYQVIVTRSFTSLVFPNGVERKDAG--FYVVCA  180 (197)
T ss_dssp             EEETTCCCEEEEEEEEESC---CEEEEEESSCEECS----SSSCEEEECSSEEEEECTTCCCGGGCE--EEEEEE
T ss_pred             EEeCCCEEEEEEEEEecCC---CcEEEEECCEEeec----CCCEEEEEcCCceEEEEeCCCCcccCE--eEEEEE
Confidence            4567999999999753322   26789999876643    56777653   46777877 7666542  344443

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=94.31  E-value=0.0096  Score=40.98  Aligned_cols=59  Identities=17%  Similarity=0.288  Sum_probs=37.5

Q ss_pred             eeecCeEEEEccCCCCccce-eEEeEEccCCeeeecC------cCCCceEEEccCccEEEEeEeeecC
Q psy5692          19 VILGNTAVLRCQIPSYMSEY-IIVTSWIQDDVNIYLN------TDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~-V~V~SW~~Dd~~I~p~------~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      |..|.+|.|.|.+..+-.|. ....+|.+++..+...      ...+|+|..  ++.|.|.+++..|+
T Consensus        23 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~--~~~L~I~~~~~~D~   88 (218)
T 2rgs_A           23 LMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRV--VSTLPIQHQDWMSG   88 (218)
T ss_dssp             HCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEE--EEEEECCHHHHHTT
T ss_pred             hccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEE--EEEEEEcHHHcCCC
Confidence            67899999999986432111 1458999998554221      123567654  45677777766553

>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}

Probab=94.29  E-value=0.015  Score=36.56  Aligned_cols=67  Identities=15%  Similarity=0.152  Sum_probs=39.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC----eeeecCcC-CCceEEEc-----c---CccEEEEeEeeecCCccee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD----VNIYLNTD-TGGKYVVL-----S---SGDLYVQIRLSITGNLSVK   84 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd----~~I~p~~~-~dgKY~vl-----p---sGeL~Ir~v~~~~~n~~~~   84 (98)
                      .|..|.+|+|.|.+.+....  ....|.+++    ..|+.... ..+|+...     +   +..|.|++++.+|.  ..=
T Consensus        18 ~~~~G~~v~L~C~~~~~~~~--~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~Ds--G~Y   93 (120)
T 2yz1_A           18 SVAAGDSTVLNCTLTSLLPV--GPIKWYRGVGQSRLLIYSFTGEHFPRVTNVSDATKRNNMDFSIRISNVTPEDA--GTY   93 (120)
T ss_dssp             EECTTCCEEECCEESCCCSC--CCEEEEESSSTTCEEEEEECEECTTTCCSEEECCBSSTTBCCEEECSCCGGGC--EEE
T ss_pred             EEeCCCCEEEEeEECCCCCC--cEEEEEcCCCCCcEEEEEcCCcccCcccceeeccccCCCeEEEEECCCCHHHC--EEE
Confidence            46689999999998654222  246899875    24443211 11233221     1   25799999998774  444


Q ss_pred             eeee
Q psy5692          85 KMKV   88 (98)
Q Consensus        85 ~~~~   88 (98)
                      -|.+
T Consensus        94 ~C~~   97 (120)
T 2yz1_A           94 YCVK   97 (120)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4544

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=94.29  E-value=0.028  Score=42.93  Aligned_cols=59  Identities=19%  Similarity=0.180  Sum_probs=39.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----ee-eec----CcCCCceEEEccCc---cEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VN-IYL----NTDTGGKYVVLSSG---DLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~-I~p----~~~~dgKY~vlpsG---eL~Ir~v~~~~~   79 (98)
                      .|..|.+++|.|.+...-   ....+|++++     .. ++.    ....++||.+.++|   .|.|++++.+|.
T Consensus        11 ~v~~G~~v~L~C~~~~~~---~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   82 (523)
T 2rcj_C           11 SGTPGQRVTISCTGTSSG---SITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDE   82 (523)
T ss_pred             EEecCCcEEEEEEEeccC---CceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhC
Confidence            456899999999986432   3457899874     11 111    11235899876554   699999998775

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=94.23  E-value=0.075  Score=38.56  Aligned_cols=62  Identities=8%  Similarity=-0.049  Sum_probs=40.7

Q ss_pred             ceeecCeEEEEccCCCCccc-e-eEEeEEccCCeeeecC----cCCCceEEEc-----------c--CccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSE-Y-IIVTSWIQDDVNIYLN----TDTGGKYVVL-----------S--SGDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d-~-V~V~SW~~Dd~~I~p~----~~~dgKY~vl-----------p--sGeL~Ir~v~~~~   78 (98)
                      .+..|.++.|.|.+...... + .....|..++..+.++    .-.+++|.+.           .  ++.|.|++++.+|
T Consensus       187 ~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d  266 (363)
T 1wio_A          187 YKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQY  266 (363)
T ss_dssp             EEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGG
T ss_pred             EEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCc
Confidence            56789999999987643332 2 3456899988554331    0025677664           3  4489999988776


Q ss_pred             C
Q psy5692          79 G   79 (98)
Q Consensus        79 ~   79 (98)
                      .
T Consensus       267 ~  267 (363)
T 1wio_A          267 A  267 (363)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=94.22  E-value=0.023  Score=41.05  Aligned_cols=61  Identities=21%  Similarity=0.152  Sum_probs=40.9

Q ss_pred             EeeeeceeecCeEEEEccCCCCccc--eeEEeEEccCCeeeecCcCCCceEEEccCc----cEEEEeEeeecC
Q psy5692          13 VNYEHNVILGNTAVLRCQIPSYMSE--YIIVTSWIQDDVNIYLNTDTGGKYVVLSSG----DLYVQIRLSITG   79 (98)
Q Consensus        13 V~d~~~VirGNtAVLkC~IPs~V~d--~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG----eL~Ir~v~~~~~   79 (98)
                      ..+. .|..|.+|+|.|.+......  ---...|..++..| |    ++++..+.+|    .|.|++++..|.
T Consensus         7 p~~~-~v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~~g~~l-~----~~~~~~~~~~~~~~~L~i~~~~~~d~   73 (313)
T 2d9q_B            7 VSAP-IVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQ-P----GGRQQRLSDGTQESIITLPHLNHTQA   73 (313)
T ss_dssp             ESCS-EECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBC-T----TCEECCCSSSCCCEEEEESCCCSSEE
T ss_pred             CCCc-EEcCCCCEEEEEEECCCCCCCCcccceEEEeCCEEC-C----ccceEEEecCeEEEEEEEeccCCCcc
Confidence            4454 67899999999997643111  12335799998765 4    3566666655    599999887653

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=94.21  E-value=0.026  Score=42.25  Aligned_cols=61  Identities=15%  Similarity=0.217  Sum_probs=40.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC--e----eeecC---------cCCCceEEEccC-----ccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V----NIYLN---------TDTGGKYVVLSS-----GDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd--~----~I~p~---------~~~dgKY~vlps-----GeL~Ir~v~~~   77 (98)
                      .|..|.+|+|.|.++..... .....|++++  .    .++..         ....+||.+..+     +.|.|++++.+
T Consensus        10 ~v~~G~~v~L~C~~~~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   88 (434)
T 1igy_B           10 LARPGASVKMSCKASGYTFT-TYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSSLTSD   88 (434)
T ss_dssp             EECTBCCEEECCEECSSCGG-GCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECSBCGG
T ss_pred             EecCCCCEEEEEEccCCccc-CceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECCCChH
Confidence            56789999999998754211 2337898763  1    11211         113689998753     47999999988


Q ss_pred             cC
Q psy5692          78 TG   79 (98)
Q Consensus        78 ~~   79 (98)
                      |.
T Consensus        89 D~   90 (434)
T 1igy_B           89 DS   90 (434)
T ss_dssp             GC
T ss_pred             HC
Confidence            75

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=94.20  E-value=0.029  Score=38.06  Aligned_cols=59  Identities=17%  Similarity=0.223  Sum_probs=39.7

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-ecCc----CCCceEEEcc-----CccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLNT----DTGGKYVVLS-----SGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~p~~----~~dgKY~vlp-----sGeL~Ir~v~~~~~   79 (98)
                      .|..|.++.|.|.+...-.   ....|.+++     ..| +...    ..++||.+..     ++.|.|++++.+|.
T Consensus       138 ~v~~G~~v~L~C~~~~~p~---~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~  211 (238)
T 2p1y_A          138 TVWEGETAILNCSYENSAF---DYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDS  211 (238)
T ss_dssp             EEETTSCEEEEEECCCTTC---CEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGC
T ss_pred             EEeCCCeEEEEEEEecCCC---CcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHC
Confidence            4678999999999865543   357898863     112 2111    1257888863     36899999998774

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=94.20  E-value=0.0035  Score=42.60  Aligned_cols=66  Identities=14%  Similarity=0.184  Sum_probs=31.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----e-eeecC----cCCCceEEEccCc---cEEEEeEeeecCCccee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----V-NIYLN----TDTGGKYVVLSSG---DLYVQIRLSITGNLSVK   84 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~-~I~p~----~~~dgKY~vlpsG---eL~Ir~v~~~~~n~~~~   84 (98)
                      .|..|.+++|.|.+...-..   ...|.+++     . .+|..    ....+||.+.++|   .|.|++++.+|.  ..-
T Consensus        34 ~v~~G~~v~L~C~~~~~~~~---~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~--G~Y  108 (233)
T 3bqu_C           34 SMSIGEKVTIRCITSTDIDD---DMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSEDV--ADY  108 (233)
T ss_dssp             -------CCEEEEEEEEESS---CEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CCCC--SEE
T ss_pred             EEecCCCEEEEEecCCcCCC---eEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHHHC--EEE
Confidence            47899999999997543222   36898753     1 12211    1235688777555   799999998875  344


Q ss_pred             eeee
Q psy5692          85 KMKV   88 (98)
Q Consensus        85 ~~~~   88 (98)
                      .|.+
T Consensus       109 ~C~~  112 (233)
T 3bqu_C          109 YCLQ  112 (233)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4544

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=94.19  E-value=0.02  Score=35.63  Aligned_cols=68  Identities=9%  Similarity=0.098  Sum_probs=42.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC--e----eeecCc---CCCceEEEcc-----CccEEEEeEeeecCCcce
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V----NIYLNT---DTGGKYVVLS-----SGDLYVQIRLSITGNLSV   83 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd--~----~I~p~~---~~dgKY~vlp-----sGeL~Ir~v~~~~~n~~~   83 (98)
                      .|..|.+|.|.|.+.+....  ....|.+..  .    .++-..   ...+||.+..     +..|.|++++.+|.  ..
T Consensus         7 ~~~~G~~v~L~C~~~~~~~~--~~v~W~r~~~~~~~~~l~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Ds--G~   82 (110)
T 2q87_A            7 AGPVGGSLSVQCPYEKEHRT--LNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPANLSFTVTLENLTEEDA--GT   82 (110)
T ss_dssp             EECTTSCEEEEEECCGGGTT--SEEEEESCCSSSSCCCSEESSSTTCSEETTEEEEEEGGGTEEEEEESSCCGGGC--EE
T ss_pred             EEeCCCcEEEEeEecCCcCC--ceEEEEecCCCCCCeEEEEeCCccccccCCEEEEEcCcCCEEEEEEccCCHHHC--EE
Confidence            46689999999998653322  258998864  1    122111   1357888862     23799999998763  44


Q ss_pred             eeeeeh
Q psy5692          84 KKMKVE   89 (98)
Q Consensus        84 ~~~~~~   89 (98)
                      =.|.+.
T Consensus        83 Y~C~~~   88 (110)
T 2q87_A           83 YWCGVD   88 (110)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            455544

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=94.18  E-value=0.035  Score=34.91  Aligned_cols=52  Identities=15%  Similarity=0.190  Sum_probs=32.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEc-cCccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL-SSGDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vl-psGeL~Ir~v~~~~   78 (98)
                      .|..|.+++|.|..+...    ....|.+++..+.+     +++... .+..|.|.+|+.+|
T Consensus        15 ~v~~G~~VtL~C~~~~~~----~~~~w~k~g~~~~~-----~~~~~~~~~~~l~I~~v~~~d   67 (105)
T 2vsd_A           15 GVSLGDTVTLRCHLPRMA----AWVQLWLNGTLRFD-----KEKDKEQDAAEFSFAVTNLED   67 (105)
T ss_dssp             SCCTTCEEEEEEECCSSC----EEEEEEETTEEEEE-----EEECTTCSEEEEEEECCSGGG
T ss_pred             CcCcCCCEEEEEEcCCCC----cEEEEEECCcccee-----eeccCCCCEEEEEECCCCHHH
Confidence            578999999999986542    23469998854432     121111 23467777776665

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=94.18  E-value=0.0053  Score=38.72  Aligned_cols=57  Identities=19%  Similarity=0.295  Sum_probs=40.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEc--c--C---ccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL--S--S---GDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vl--p--s---GeL~Ir~v~~~~   78 (98)
                      .+..|.++.|.|.+..+-..  ....|.+++..|.+.  .++||.+.  +  .   ..|.|++++.+|
T Consensus        24 ~~~~G~~v~l~C~~~g~P~p--~~i~W~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   87 (122)
T 2cry_A           24 HALHGEKGQIKCFIRSTPPP--DRIAWSWKENVLESG--TSGRYTVETISTEEGVISTLTISNIVRAD   87 (122)
T ss_dssp             CCCTTSCCCCCEEECCSSCC--SEEEEESSSCEECSE--EETTEEEEEEEETTEEEEEEECTTCCHHH
T ss_pred             EEecCCCEEEEEEEeecCCC--cEeEEEECCEEccCC--CCCCEEEEEecCCCceEEEEEEcCCChhh
Confidence            67899999999998644332  125799998766432  24788773  2  2   279999998877

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=94.16  E-value=0.036  Score=37.77  Aligned_cols=68  Identities=12%  Similarity=0.077  Sum_probs=42.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----e-eeecCc--------CCCceEEEcc--C---ccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----V-NIYLNT--------DTGGKYVVLS--S---GDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~-~I~p~~--------~~dgKY~vlp--s---GeL~Ir~v~~~~   78 (98)
                      .|..|.+|+|.|.+..+-.. .....|.+++     . .+|-..        ...|||.+..  +   +.|.|++++.+|
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   89 (215)
T 1c5d_H           11 LVQPSQTLSLTCTVSGFPLT-TNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTED   89 (215)
T ss_dssp             EECTTCCEEEEEEECSSCTT-SCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCCGGG
T ss_pred             eecCCCcEEEEEEECCCcCC-CCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCCccc
Confidence            56689999999998654211 1346898752     1 122111        2358999874  2   379999999877


Q ss_pred             CCcceeeeee
Q psy5692          79 GNLSVKKMKV   88 (98)
Q Consensus        79 ~n~~~~~~~~   88 (98)
                      .  ..-.|.+
T Consensus        90 ~--G~Y~C~~   97 (215)
T 1c5d_H           90 T--AIYFCTR   97 (215)
T ss_dssp             C--EEEEEEE
T ss_pred             C--EEEEEEE
Confidence            4  4444444

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=94.14  E-value=0.062  Score=38.71  Aligned_cols=55  Identities=11%  Similarity=0.079  Sum_probs=39.0

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      .+..|.++.|.|.+...-..   ..+|.+++..+.+    +.......++.|.|.+++.+|+
T Consensus       233 ~~~~G~~v~l~C~~~g~p~~---~v~W~~~~~~~~~----~~~~~~~~~~~L~i~~~~~~d~  287 (404)
T 3p3y_A          233 MVLRGMDLLLECIASGVPTP---DIAWYKKGGDLPS----DKAKFENFNKALRITNVSEEDS  287 (404)
T ss_dssp             EEETTSCEEEECCBCCSSCC---EEEEEETTBCCCT----TTEEEEGGGTEEEESSCCGGGC
T ss_pred             eEecCCCEEEEEEECCCCCC---cEEEEECCEECCC----CcccccccCceEEEccCCHhHC
Confidence            47789999999998654332   5789999866533    3344445678888888877663

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=94.12  E-value=0.0084  Score=40.07  Aligned_cols=55  Identities=13%  Similarity=0.033  Sum_probs=33.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~   78 (98)
                      .|..|.+++|.|.+.....    -..|.+++..+.+..  ........++.|.|.+++..|
T Consensus        15 ~v~~G~~v~L~C~~~~~~~----~~~W~k~g~~~~~~~--~~~~~~~~~~~L~i~~v~~~D   69 (198)
T 1ugn_A           15 VITQGSPVTLRCQGGQETQ----EYRLYREKKTAPWIT--RIPQELVKKGQFPIPSITWEH   69 (198)
T ss_dssp             EEETTCCEEEEEECCTTCC----CEEEEESSSCCHHHH--TSCHHHHTTTEEEESSCCGGG
T ss_pred             cccCCCcEEEEEEecCCCc----EEEEEECCccccccc--cccccCCcccEEEECCCCHHH
Confidence            6779999999999865543    378999885542211  011112345666666665554

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=94.06  E-value=0.033  Score=40.99  Aligned_cols=62  Identities=16%  Similarity=0.214  Sum_probs=40.4

Q ss_pred             ceeecCeEEEEccCCCCccc-eeEEeEEccCC--e---ee-ec----CcCCCceEEEccCc---cEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSE-YIIVTSWIQDD--V---NI-YL----NTDTGGKYVVLSSG---DLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d-~V~V~SW~~Dd--~---~I-~p----~~~~dgKY~vlpsG---eL~Ir~v~~~~~   79 (98)
                      .|..|.+++|.|.+...... -.....|.+++  .   .+ +.    .....+||.+..+|   .|.|++++.+|.
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   87 (438)
T 1qgc_4           12 AVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVEADDV   87 (438)
T ss_dssp             EECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCCcCcCC
Confidence            46689999999997644331 11357899863  1   11 11    11235799887543   699999998875

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=94.05  E-value=0.02  Score=39.74  Aligned_cols=59  Identities=17%  Similarity=0.162  Sum_probs=39.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC------eeeecC----cCCCceEEEccCc---cEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIYLN----TDTGGKYVVLSSG---DLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd------~~I~p~----~~~dgKY~vlpsG---eL~Ir~v~~~~~   79 (98)
                      .|..|.+|+|.|.+...-.   ....|.+++      ..++..    ...++||.+.+++   .|.|++++.+|.
T Consensus        12 ~v~~G~~v~L~C~~~~~~~---~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   83 (242)
T 2znx_A           12 SVTPGNSVSLSCRASQSIG---NNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF   83 (242)
T ss_dssp             EECTTCCEEEEEEESSCCT---TCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEcCCCcEEEEEEeCCCCC---ceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHC
Confidence            4668999999999764432   246898742      122221    1236899987544   699999998774

>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}

Probab=94.04  E-value=0.078  Score=35.93  Aligned_cols=66  Identities=15%  Similarity=0.183  Sum_probs=41.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC------eeeecCc----CCCceEEEcc---CccEEEEeEeeecCCccee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIYLNT----DTGGKYVVLS---SGDLYVQIRLSITGNLSVK   84 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd------~~I~p~~----~~dgKY~vlp---sGeL~Ir~v~~~~~n~~~~   84 (98)
                      .|..|.++.|.|.+......   ...|.+..      ..++...    ...+||.+.+   +..|.|++++.+|.  +.-
T Consensus        11 ~v~~G~~vtL~C~~s~~~~~---~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~sL~I~~l~~~Ds--G~Y   85 (143)
T 3u6r_L           11 SLSPGERATLSCRASQSVNK---YLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISNLEPEDF--AVY   85 (143)
T ss_dssp             EECTTCCEEEEEEESSCCTT---CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGC--EEE
T ss_pred             EEeCCCCEEEEEEECCCCce---eeEEEEECCCCCCEEEEEeCCccCCCccCcEeEEccCCEEEEEEccCcccCC--EEE
Confidence            34489999999998765422   35898742      2333211    2367898864   33599999998874  344


Q ss_pred             eeee
Q psy5692          85 KMKV   88 (98)
Q Consensus        85 ~~~~   88 (98)
                      -|.+
T Consensus        86 ~C~~   89 (143)
T 3u6r_L           86 YCQQ   89 (143)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4433

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=94.02  E-value=0.031  Score=39.04  Aligned_cols=61  Identities=15%  Similarity=0.104  Sum_probs=35.1

Q ss_pred             ceeecCeEEEEccCCC-CccceeEEeEEccCC----eeee---------cCcCCCceEEEcc---CccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPS-YMSEYIIVTSWIQDD----VNIY---------LNTDTGGKYVVLS---SGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs-~V~d~V~V~SW~~Dd----~~I~---------p~~~~dgKY~vlp---sGeL~Ir~v~~~~~   79 (98)
                      -++.|.+|+|.|.+.. .-..-. ..+|+++.    ..++         ......++|.+..   ++.|.|++++.+|.
T Consensus         4 ta~~Ge~v~L~C~~~~v~~~p~~-~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   81 (203)
T 4fa8_A            4 TAFLGERVTLTSYWRRVSLGPEI-EVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   81 (203)
T ss_dssp             EEETTCCEEEEEECSSTTCSTTS-EEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEEcCCCEEEEeeeeccCCCCCc-EEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence            3678999999995421 111222 35899864    1111         1112345666644   34589999888774

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=93.98  E-value=0.025  Score=36.51  Aligned_cols=52  Identities=10%  Similarity=0.073  Sum_probs=36.7

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccC---ccEEEEeEee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS---GDLYVQIRLS   76 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlps---GeL~Ir~v~~   76 (98)
                      .+..|.++.|.|.+..+-..   ..+|.+++..|.+    +.++.+..+   +.|.|.++..
T Consensus       114 ~~~~g~~~~l~C~~~~~p~p---~v~W~~~~~~~~~----~~~~~~~~~~~~~~L~i~~~~~  168 (197)
T 3lcy_A          114 YGAVGSTLRLHVMYIGRPVP---AMTWFHGQKLLQN----SENITIENTEHYTHLVMKNVQR  168 (197)
T ss_dssp             EEETTSCEEEEEEEEEESCC---EEEEEETTEECCC----CSSEEEEECSSEEEEEESSCCH
T ss_pred             eecCCCeEEEEEEEeeeeCC---eeEEeECCEECCC----CCceEEEEcCCEEEEEEccccc
Confidence            45679999999997543322   4789999876643    567776654   6788888763

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=93.97  E-value=0.02  Score=38.09  Aligned_cols=66  Identities=12%  Similarity=0.145  Sum_probs=41.4

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCCeeeecC--------cCCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN--------TDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~--------~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      ++.|.++.|.|.+..+-.. -...+|.+++..|.+.        .+.+|+|.+  ++.|.|++++..|+  ..-.|.++
T Consensus       124 ~~~g~~~~l~C~~~g~~p~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~d~--G~Y~C~a~  197 (213)
T 3d9a_L          124 QLTSGGASVVCFLNNFYPK-DINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM--SSTLTLTKDEYERH--NSYTCEAT  197 (213)
T ss_dssp             HHHTTEEEEEEEEEEEBSS-CCEEEEEETTEEECTTEEEEECCCCTTTCCEEE--EEEEEEEHHHHHHC--CEEEEEEE
T ss_pred             hcCCCcEEEEEEEeeecCC-ceEEEEEcCCCcCcceeeecCCCccCCCCCEEE--EEEEEEeccccCCC--CEEEEEEE
Confidence            4579999999998532111 1247899998766443        134566654  45788888876654  34455543

>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble protein, KD, protein engineering, immunotherapy, immune-suppressor, immune system; 2.10A {Homo sapiens} PDB: 1akj_D 1cd8_A 3qzw_G 2q3a_A

Probab=93.97  E-value=0.076  Score=33.78  Aligned_cols=68  Identities=19%  Similarity=0.172  Sum_probs=42.0

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC--e------eeecCcC-------C-CceEEEccCc---cEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V------NIYLNTD-------T-GGKYVVLSSG---DLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd--~------~I~p~~~-------~-dgKY~vlpsG---eL~Ir~v~~~~   78 (98)
                      .|..|.+|+|.|...+....  ....|.+..  .      .|+-...       . .+||.+..++   -|.|++++.+|
T Consensus        11 ~v~~G~~vtL~C~~~~~~~~--~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~D   88 (114)
T 2hp4_A           11 TWNLGETVELKCQVLLSNPT--SGASWLFQPRGAAASPTFLLYLNQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRREN   88 (114)
T ss_dssp             CCCTTCCEEEEEEECCSSCC--SCEEEEEEESSSSCCCEEEEEESSSSCEECTTCCTTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EEcCCCCEEEEEEeecCCCC--ceEEEEEECCCCCCCcEEEEEEcCCCccccCCCCcccEEEEecCCEEEEEECCCCHHH
Confidence            45689999999997644322  236897631  2      2332211       1 4788876544   59999999877


Q ss_pred             CCcceeeeeeh
Q psy5692          79 GNLSVKKMKVE   89 (98)
Q Consensus        79 ~n~~~~~~~~~   89 (98)
                      .  ++=-|.+.
T Consensus        89 s--g~Y~C~~~   97 (114)
T 2hp4_A           89 E--GYYFCSAL   97 (114)
T ss_dssp             C--EEEEEEEE
T ss_pred             C--EEEEEEEe
Confidence            4  44455543

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=93.97  E-value=0.035  Score=39.72  Aligned_cols=68  Identities=6%  Similarity=0.112  Sum_probs=42.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-ecC---------cCCCceEEEccCcc-----EEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN---------TDTGGKYVVLSSGD-----LYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~p~---------~~~dgKY~vlpsGe-----L~Ir~v~~~   77 (98)
                      .|..|.+++|.|.+.++-... ....|++..     ..+ +-.         ....|||.+..++.     |.|++++.+
T Consensus        34 ~~~~G~~v~L~C~~s~~~~~~-~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~  112 (267)
T 3u1s_H           34 VKKPGSSVKVSCKASGNSFSN-HDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMELRGLTAD  112 (267)
T ss_dssp             EECTTCCEEEEEEEGGGGGGT-SEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEECSCCGG
T ss_pred             EEeCCCcEEEEEEeeCCccCC-CEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEECCCChh
Confidence            567899999999986432222 456787642     122 211         12358999875544     999999988


Q ss_pred             cCCcceeeeee
Q psy5692          78 TGNLSVKKMKV   88 (98)
Q Consensus        78 ~~n~~~~~~~~   88 (98)
                      |.  +.--|.+
T Consensus       113 Ds--G~Y~C~~  121 (267)
T 3u1s_H          113 DT--AIYYCLT  121 (267)
T ss_dssp             GC--EEEEEEE
T ss_pred             hC--EEEEEEE
Confidence            74  4444444

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=93.93  E-value=0.049  Score=38.07  Aligned_cols=58  Identities=21%  Similarity=0.164  Sum_probs=39.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----e-eeecCc-------CCCceEEEcc----CccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----V-NIYLNT-------DTGGKYVVLS----SGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~-~I~p~~-------~~dgKY~vlp----sGeL~Ir~v~~~~~   79 (98)
                      .|..|.+|+|.|.+..   . .....|+++.     . .+|...       ...+||.+..    ++.|.|++++.+|.
T Consensus        14 ~v~~G~~v~L~C~~~~---~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~   88 (252)
T 1oga_E           14 FRKEGQNVTLSCEQNL---N-HDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPT   88 (252)
T ss_dssp             EEETTCCEEECCEECS---C-CSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCC
T ss_pred             EEcCCCcEEEEEEeCC---C-CCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCChhhC
Confidence            4568999999999742   1 3457898753     1 222211       2358999874    46899999998873

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=93.90  E-value=0.074  Score=37.88  Aligned_cols=67  Identities=15%  Similarity=0.190  Sum_probs=43.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC----eeeecCc-CCCceEEEcc--------CccEEEEeEeeecCCccee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD----VNIYLNT-DTGGKYVVLS--------SGDLYVQIRLSITGNLSVK   84 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd----~~I~p~~-~~dgKY~vlp--------sGeL~Ir~v~~~~~n~~~~   84 (98)
                      .|..|.+++|.|.+...-..  ....|.+++    ..|+... ...+|+.+++        ++.|.|++++.+|.  ..-
T Consensus        14 ~v~~G~~v~L~C~~~~~~p~--~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~--G~Y   89 (327)
T 2wng_A           14 SVAAGESAILHCTVTSLIPV--GPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADA--GTY   89 (327)
T ss_dssp             EEETTSCEEECCEESCCCSC--CCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGC--EEE
T ss_pred             EEecCCcEEEEEEccCcCCC--ceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccC--eEE
Confidence            56789999999998654211  246899986    2344321 2345887743        46799999987774  344


Q ss_pred             eeee
Q psy5692          85 KMKV   88 (98)
Q Consensus        85 ~~~~   88 (98)
                      .|.+
T Consensus        90 ~C~a   93 (327)
T 2wng_A           90 YCVK   93 (327)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            4443

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=93.86  E-value=0.065  Score=38.28  Aligned_cols=53  Identities=8%  Similarity=0.078  Sum_probs=35.7

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      .|..|.+++|.|.....   .. ...|.+|+..+.+     .......++.|.|.+|+.+|.
T Consensus       112 ~v~~G~~vtL~C~~~~~---~~-~~~w~k~g~~~~~-----~~~~~~~~~~l~I~~v~~~d~  164 (242)
T 1p6f_A          112 EVISGEKVTFYCRLDTA---TS-MFLLLKEGRSSHV-----QRGYGKVQAEFPLGPVTTAHR  164 (242)
T ss_dssp             EEETTCEEEEEEECTTS---CS-EEEEEECSSSCEE-----EEEECSSEEEEEEEECCGGGC
T ss_pred             ccCCCCcEEEEEecCCC---CC-EEEEEECCCccCc-----cccCCCceEEEEeCCCccccC
Confidence            67899999999997532   22 5689999854432     111223567888888877664

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=93.85  E-value=0.079  Score=34.07  Aligned_cols=62  Identities=19%  Similarity=0.270  Sum_probs=40.0

Q ss_pred             ceeecCeEEEEccCCCCcc-ceeEEeEEccCC------eeeecC----cCCCceEEEccCc---cEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMS-EYIIVTSWIQDD------VNIYLN----TDTGGKYVVLSSG---DLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~-d~V~V~SW~~Dd------~~I~p~----~~~dgKY~vlpsG---eL~Ir~v~~~~~   79 (98)
                      .|..|.+|+|.|.+..... .-.....|.+..      ..++..    ....+||.+.+++   .|.|++++.+|.
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~sL~I~~v~~~Ds   87 (126)
T 4ffy_L           12 AVSLGQRATISCRASESVDHYGNSFIYWYQQKPGQPPKLLIYLASNLESGVPARFSGSGSETDFTLTIDSVETDDA   87 (126)
T ss_dssp             EEETTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeCCCCEEEEEecCCCcccCCCceEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEecCCCEEEEEECCCCHHHC
Confidence            4558999999999875431 013456898742      233321    1235788887533   599999998874

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=93.81  E-value=0.033  Score=39.67  Aligned_cols=69  Identities=12%  Similarity=0.108  Sum_probs=43.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee---ecC-------cCCCceEEEccCcc-----EEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI---YLN-------TDTGGKYVVLSSGD-----LYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I---~p~-------~~~dgKY~vlpsGe-----L~Ir~v~~~   77 (98)
                      .|..|.+|.|.|.+..+-... ....|++..     ..|   ++.       ....|||.+..++.     |.|++++.+
T Consensus        10 ~v~~G~~v~L~C~~s~~~~~~-~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   88 (248)
T 3u2s_H           10 VVQPGSSLRLSCAASGFDFSR-QGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNSLRVE   88 (248)
T ss_dssp             EECTTCCEEEEEEEESSCGGG-SCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             EEeCCCCEEEEEEeccccCCc-cEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCCHH
Confidence            567899999999986532222 245787632     112   111       12358999876443     999999988


Q ss_pred             cCCcceeeeeeh
Q psy5692          78 TGNLSVKKMKVE   89 (98)
Q Consensus        78 ~~n~~~~~~~~~   89 (98)
                      |.  +.--|.+.
T Consensus        89 Ds--G~Y~C~~~   98 (248)
T 3u2s_H           89 DT--ATYFCVRE   98 (248)
T ss_dssp             GC--EEEEEEEE
T ss_pred             HC--EEEEEEEe
Confidence            85  55556553

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=93.80  E-value=0.053  Score=40.00  Aligned_cols=60  Identities=10%  Similarity=0.220  Sum_probs=42.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMK   87 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~   87 (98)
                      .+..|.++.|.|.+...-.   -..+|++++..|.+    ++++.+ .+|.|.|++++.+|.  ..-.|.
T Consensus       306 ~v~~g~~v~l~C~~~g~P~---p~i~W~k~g~~l~~----~~~~~~-~~~~L~i~~v~~~D~--G~Y~C~  365 (384)
T 3kld_A          306 HVAMEESVFWECKANGRPK---PTYRWLKNGDPLLT----RDRIQI-EQGTLNITIVNLSDA--GMYQCV  365 (384)
T ss_dssp             EECTTCCEEEECEEEEESC---CEEEEEETTEECCC----BTTEEE-ETTEEEESSCCGGGC--EEEEEE
T ss_pred             EecCCCCEEEEeECCccCC---CeEEEEECCEECCC----CccEEE-eCCEEEEeecChhhC--EEEEEE
Confidence            5678999999999743222   23579999977644    456664 688999999987763  334444

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=93.79  E-value=0.033  Score=39.18  Aligned_cols=62  Identities=18%  Similarity=0.211  Sum_probs=39.8

Q ss_pred             ceeecCeEEEEccCCCCccc--eeEEeEEccCC-----e-eeecC----cCCCceEEEccCc---cEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSE--YIIVTSWIQDD-----V-NIYLN----TDTGGKYVVLSSG---DLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d--~V~V~SW~~Dd-----~-~I~p~----~~~dgKY~vlpsG---eL~Ir~v~~~~~   79 (98)
                      .|..|.+|+|.|.+...-..  --....|.+++     . .++..    ...++||.+..++   .|.|++++.+|.
T Consensus        26 ~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds  102 (268)
T 1x9q_A           26 PVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINRVEAEDL  102 (268)
T ss_dssp             CCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEECCCChhHC
Confidence            57799999999997544310  01346798753     1 22211    1136899987543   799999998774

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=93.77  E-value=0.025  Score=40.55  Aligned_cols=61  Identities=10%  Similarity=0.096  Sum_probs=38.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC------eeeecC---------cCCCceEEEccCc-----cEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIYLN---------TDTGGKYVVLSSG-----DLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd------~~I~p~---------~~~dgKY~vlpsG-----eL~Ir~v~~~   77 (98)
                      .|..|.+++|.|.+..+-.. .....|++..      ..++-.         ....+||.+..++     .|.|++++.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   89 (280)
T 3fku_X           11 VKKPGSSVKVSCTSSEVTFS-SFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSLRSE   89 (280)
T ss_dssp             EECTTCCEEEEEEECCSCCT-TSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSCCST
T ss_pred             EECCCCcEEEEEEeeccCCC-CeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCCChh
Confidence            46689999999998653111 1246787632      111111         1134799988543     6999999988


Q ss_pred             cC
Q psy5692          78 TG   79 (98)
Q Consensus        78 ~~   79 (98)
                      |.
T Consensus        90 Ds   91 (280)
T 3fku_X           90 DT   91 (280)
T ss_dssp             TC
T ss_pred             hC
Confidence            74

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=93.76  E-value=0.032  Score=42.03  Aligned_cols=68  Identities=12%  Similarity=0.134  Sum_probs=43.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-e--cC-------cCCCceEEEccC-----ccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-Y--LN-------TDTGGKYVVLSS-----GDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~--p~-------~~~dgKY~vlps-----GeL~Ir~v~~~   77 (98)
                      .|..|.+|+|.|.++.+-.. .....|++++     ..+ +  +.       ....|||.+..+     +.|.|++++.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~-~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   89 (457)
T 1hzh_H           11 VKKPGASVKVSCQASGYRFS-NFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSA   89 (457)
T ss_dssp             EECTTCCEEECEEEESSCGG-GSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EEcCCCCEEEEEEecCcccc-CcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECCCCcc
Confidence            46689999999998654311 1236898742     112 1  11       124689998753     37999999988


Q ss_pred             cCCcceeeeee
Q psy5692          78 TGNLSVKKMKV   88 (98)
Q Consensus        78 ~~n~~~~~~~~   88 (98)
                      |.  ..-.|.+
T Consensus        90 D~--G~Y~C~~   98 (457)
T 1hzh_H           90 DT--AVYYCAR   98 (457)
T ss_dssp             GC--EEEEEEE
T ss_pred             cC--EEEEEEE
Confidence            75  3444544

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=93.75  E-value=0.04  Score=38.29  Aligned_cols=60  Identities=15%  Similarity=0.168  Sum_probs=39.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccC---C--e-eeecC----cCCCceEEEccCcc---EEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQD---D--V-NIYLN----TDTGGKYVVLSSGD---LYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~D---d--~-~I~p~----~~~dgKY~vlpsGe---L~Ir~v~~~~~   79 (98)
                      .|..|.++.|.|.+......  ....|.+.   .  . .++..    ....+||.+..+|.   |.|++++.+|.
T Consensus       160 ~v~~G~~v~L~C~~~~~~~~--~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds  232 (256)
T 3juy_B          160 SLSPGERATFSCRSSHSIRS--RRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDF  232 (256)
T ss_dssp             EECTTSCEEEEEEESSCCTT--CCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeCCCCEEEEEEECCCcCC--eeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHC
Confidence            56789999999998653321  34678762   2  2 22221    11357898876655   99999998874

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=93.74  E-value=0.12  Score=40.52  Aligned_cols=62  Identities=8%  Similarity=0.084  Sum_probs=45.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc-CccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS-SGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp-sGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .+..|.++.|.|.++.   . .....|.+++..|.+    ++|+.+.+ ++.|.|.+++..|.  ..-.|.+.
T Consensus       122 ~v~~g~~v~l~C~~~~---p-~~~v~W~~~g~~l~~----~~~~~~~~~~~~L~i~~~~~~d~--G~Y~C~a~  184 (642)
T 1e07_A          122 PVEDKDAVAFTCEPET---Q-DATYLWWVNNQSLPV----SPRLQLSNGNRTLTLFNVTRNDT--ASYKCETQ  184 (642)
T ss_pred             eEecCCcEEEEEECCC---C-CeeEEEEECCeECCC----CCceEEcCCCCEEEEeCCCcccC--eeEEEEEe
Confidence            4567899999999875   2 355679999876633    56887764 77899999988775  34566654

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=93.74  E-value=0.086  Score=36.79  Aligned_cols=59  Identities=17%  Similarity=0.205  Sum_probs=39.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEcc--CCe---e-eecC----cCCCceEEEccC---ccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQ--DDV---N-IYLN----TDTGGKYVVLSS---GDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~--Dd~---~-I~p~----~~~dgKY~vlps---GeL~Ir~v~~~~~   79 (98)
                      .|..|.++.|.|.+...-..   ...|.+  +..   . ++..    ....+||.+..+   +.|.|++++.+|.
T Consensus       150 ~v~~G~~v~L~C~~~~~~~~---~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~  221 (257)
T 1f3r_B          150 SASVGDRVTLSCKGSQNINN---YLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDV  221 (257)
T ss_dssp             CCCTTCCEEEEEECSSCCBT---CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGC
T ss_pred             EEcCCCCEEEEEEECCcCCC---cEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhC
Confidence            46789999999998655443   468998  432   1 2221    123578988653   3699999998874

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=93.74  E-value=0.044  Score=37.60  Aligned_cols=62  Identities=18%  Similarity=0.213  Sum_probs=39.4

Q ss_pred             ceeecCeEEEEccCCCCcc-c-eeEEeEEccCC-----e-eeecC----cCCCceEEEccCc---cEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMS-E-YIIVTSWIQDD-----V-NIYLN----TDTGGKYVVLSSG---DLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~-d-~V~V~SW~~Dd-----~-~I~p~----~~~dgKY~vlpsG---eL~Ir~v~~~~~   79 (98)
                      .|..|.+|+|.|.+...-. + -.....|.+++     . .++..    ....+||.+..++   .|.|++++.+|.
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   88 (247)
T 1svz_A           12 PVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDL   88 (247)
T ss_dssp             EECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCCHHHC
Confidence            4668999999999754331 0 02346898742     1 22211    1136899987644   699999998764

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=93.72  E-value=0.092  Score=34.31  Aligned_cols=50  Identities=10%  Similarity=0.026  Sum_probs=34.0

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~   78 (98)
                      .+..|.++.|.|.+...-..  ....|.+++..+-..         ..++.|.|.+++.+|
T Consensus        99 ~~~~g~~~~l~C~~~~~~~~--~~~~W~k~g~~~~~~---------~~~~~L~i~~v~~~d  148 (175)
T 1fnl_A           99 VFKEEDPIHLRCHSWKNTAL--HKVTYLQNGKDRKYF---------HHNSDFHIPKATLKD  148 (175)
T ss_dssp             EEETTCCEEEEEEECTTCCC--EEEEEEETTEEEEEE---------EECCCEEESSCCGGG
T ss_pred             eecCCCCEEEEEEcCCCCCc--eEEEEEECCeEccCC---------CCCCEEEEcccChhh
Confidence            56789999999987543222  467899998665321         135677777776665

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=93.71  E-value=0.044  Score=38.09  Aligned_cols=69  Identities=14%  Similarity=0.039  Sum_probs=43.0

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----e-eeecC--------cCCCceEEEcc--Cc---cEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----V-NIYLN--------TDTGGKYVVLS--SG---DLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~-~I~p~--------~~~dgKY~vlp--sG---eL~Ir~v~~~~   78 (98)
                      .|..|.+|+|.|.+..+-.. .....|++.+     . .++-.        ....|||.+..  ++   .|.|++++.+|
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   89 (232)
T 1dn0_B           11 LLKPSETLSLTCAVYGGSFS-DYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAAD   89 (232)
T ss_dssp             EECTTSCEEEEEEEESSCCS-SCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EEeCCCcEEEEEEEccccCC-CceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCccc
Confidence            56689999999997543211 1347898743     1 22211        12368999874  22   79999999877


Q ss_pred             CCcceeeeeeh
Q psy5692          79 GNLSVKKMKVE   89 (98)
Q Consensus        79 ~n~~~~~~~~~   89 (98)
                      .  ..-.|.+.
T Consensus        90 ~--G~Y~C~~~   98 (232)
T 1dn0_B           90 T--AVYYCARP   98 (232)
T ss_dssp             C--EEEEEEEC
T ss_pred             C--EEEEEEEe
Confidence            5  44445443

>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A*

Probab=93.70  E-value=0.039  Score=34.88  Aligned_cols=68  Identities=16%  Similarity=0.164  Sum_probs=41.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC------eeeecC-c----CCCceEEEc--cC---ccEEEEeEeeecCCc
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIYLN-T----DTGGKYVVL--SS---GDLYVQIRLSITGNL   81 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd------~~I~p~-~----~~dgKY~vl--ps---GeL~Ir~v~~~~~n~   81 (98)
                      .|..|.+|+|.|.+.+...+  ....|.+..      ..++-. .    ...+||.+.  ++   .-|.|++++.+|.  
T Consensus        11 ~~~~G~~vtL~C~~~~~~~~--~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Ds--   86 (116)
T 1fo0_A           11 SVMEKTTVTMDCVYETQDSS--YFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDS--   86 (116)
T ss_dssp             EEETTCCEEECCEECCCCSS--CEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGC--
T ss_pred             EEecCCcEEEEeEecCCCCC--eEEEEEEeCCCCCeEEEEEEccCCcCcccCCcEEEEEeCCCCEEEEEECCCChhhC--
Confidence            34589999999998654322  247898753      122221 1    125799884  33   2599999998764  


Q ss_pred             ceeeeeeh
Q psy5692          82 SVKKMKVE   89 (98)
Q Consensus        82 ~~~~~~~~   89 (98)
                      +.=-|.+.
T Consensus        87 G~Y~C~~~   94 (116)
T 1fo0_A           87 AVYFCAMR   94 (116)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            44445443

>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A

Probab=93.67  E-value=0.047  Score=34.16  Aligned_cols=67  Identities=9%  Similarity=0.005  Sum_probs=41.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----e-eeecCcC----CCceEEEc--c---CccEEEEeEeeecCCcc
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----V-NIYLNTD----TGGKYVVL--S---SGDLYVQIRLSITGNLS   82 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~-~I~p~~~----~dgKY~vl--p---sGeL~Ir~v~~~~~n~~   82 (98)
                      .|..|.+++|.|.+...-.   ....|.+..     . .++-...    ..+||.+.  +   +.-|.|++++.+|.  +
T Consensus        11 ~~~~G~~v~L~C~~~~~~~---~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds--G   85 (112)
T 2z35_A           11 ALSEEDFLTIHCNYSASGY---PALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDS--A   85 (112)
T ss_dssp             EEETTCCEEECCEEECSSC---CEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEESSCCSTTC--S
T ss_pred             EEcCCCCEEEEEEECCCCC---CeEEEEEECCCCCcEEeEEEecccCCccCCCEEEEEcCCCCEEEEEECCCChhhC--E
Confidence            3458999999999865522   246898753     1 2222111    24788884  3   34699999988763  4


Q ss_pred             eeeeeeh
Q psy5692          83 VKKMKVE   89 (98)
Q Consensus        83 ~~~~~~~   89 (98)
                      .=-|.+.
T Consensus        86 ~Y~C~~~   92 (112)
T 2z35_A           86 VYYCALS   92 (112)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            5555554

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=93.65  E-value=0.02  Score=41.29  Aligned_cols=59  Identities=17%  Similarity=0.154  Sum_probs=39.2

Q ss_pred             ceeecCeEEEEccCCCCc--cceeEEeEEccCCeeeecCcCCCceEEEc-------cCccEEEEeEeeecCC
Q psy5692          18 NVILGNTAVLRCQIPSYM--SEYIIVTSWIQDDVNIYLNTDTGGKYVVL-------SSGDLYVQIRLSITGN   80 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V--~d~V~V~SW~~Dd~~I~p~~~~dgKY~vl-------psGeL~Ir~v~~~~~n   80 (98)
                      .+..|.++.|.|.+...-  ...+ ...|.+++..|.+.   +.+....       .++.|.|.+++.+|.-
T Consensus       239 ~v~~G~~~~l~C~~~g~p~~~~~i-~v~W~~~g~~i~~~---~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  306 (329)
T 3oq3_B          239 NVTIGEPANITCTAVSTSLLVDDV-LIDWENPSGWIIGL---DFGVYSILTSSGGITEATLYFENVTEEYIG  306 (329)
T ss_dssp             EECTTSCEEEEEEEEETTCCTTCC-EEEEECTTSCBCCB---CSSEEEEEEEETTEEEEEEEESSCCGGGTT
T ss_pred             EEecCCCEEEEEEEEECCCCCCCc-EEEEEECCeeeecc---CCceeeeecccCceeEeEEEEEeccHHHCC
Confidence            567899999999986543  1222 56899998665552   2222221       5678999988887753

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=93.64  E-value=0.055  Score=37.47  Aligned_cols=62  Identities=18%  Similarity=0.236  Sum_probs=39.6

Q ss_pred             ceeecCeEEEEccCCCCccc-eeEEeEEccC---C---eeeecCc----CCCceEEEccCc---cEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSE-YIIVTSWIQD---D---VNIYLNT----DTGGKYVVLSSG---DLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d-~V~V~SW~~D---d---~~I~p~~----~~dgKY~vlpsG---eL~Ir~v~~~~~   79 (98)
                      .|..|.++.|.|.+...... .-....|.+.   .   ..++...    ...+||.+.+++   .|.|++++.+|.
T Consensus       144 ~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds  219 (253)
T 3uzq_A          144 AVSLGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDV  219 (253)
T ss_dssp             EECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeCCCCEEEEEEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHC
Confidence            67899999999998653221 0025789873   2   1223211    134788876644   499999998874

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=93.64  E-value=0.02  Score=40.93  Aligned_cols=55  Identities=9%  Similarity=-0.065  Sum_probs=32.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~   78 (98)
                      .|..|.+++|.|..+..    .....|.+++..+....  .+......+|.|.|.+++..|
T Consensus        17 ~v~~G~~VtL~C~~~~~----~~~~~w~k~g~~~~~~~--~~~~~~~~~~~L~I~~v~~~D   71 (242)
T 1p6f_A           17 MVPKEKQVTICCQGNYG----AVEYQLHFEGSLFAVDR--PKPPERINKVKFYIPDMNSRM   71 (242)
T ss_dssp             EEETTCCEEEEEECCTT----CCEEEEEETTEEEEEEC--CSSCTTCCEEEEEECSCCGGG
T ss_pred             ccCCCCcEEEEEeeCCC----CcEEEEEECCCcccccc--ccccCCcceeEEEecCCCccc
Confidence            57889999999998643    23467999985543210  011111235566666665544

>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold, fluorogen activation, dimethylindole RE binding protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A

Probab=93.62  E-value=0.068  Score=35.00  Aligned_cols=77  Identities=19%  Similarity=0.113  Sum_probs=46.4

Q ss_pred             ceeeeceEEEEeeeeceeecCeEEEEccCCCCccceeEEeEEccCC-----e-eeecCc----CCCceEEEcc---CccE
Q psy5692           3 PVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----V-NIYLNT----DTGGKYVVLS---SGDL   69 (98)
Q Consensus         3 AVV~Q~Yev~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~-~I~p~~----~~dgKY~vlp---sGeL   69 (98)
                      .||.|+=  .+    .|..|.++.|.|.+.+.-... ....|.+..     . .|+...    ...+||.+..   +..|
T Consensus         2 p~v~Qp~--~v----~v~~G~~vtL~C~~s~~~~~~-~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~sL   74 (123)
T 3t0v_A            2 PVLTQSP--SV----SGTPGQKVTIFCSGSSSNVED-NSVYWYQQFPGTTPKVLIYNDDRRSSGVPDRFSGSKSGTSASL   74 (123)
T ss_dssp             CSBEECC--CE----EECTTCCEEEEEECCTTTTTT-SCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEE
T ss_pred             CccCccC--eE----EEcCCCCEEEEEecCCCccCC-CeEEEEEECCCCCCEEEEEECCcCCCCCcCCEEEEccCCEEEE
Confidence            3677762  22    455899999999987553111 346788742     2 333211    1357888764   4469


Q ss_pred             EEEeEeeecCCcceeeeee
Q psy5692          70 YVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        70 ~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .|++++.+|.  +.--|.+
T Consensus        75 ~I~~l~~~Ds--G~Y~C~~   91 (123)
T 3t0v_A           75 AISGLRSEDE--ADYYCLS   91 (123)
T ss_dssp             EECSCCGGGC--EEEEEEE
T ss_pred             EECCCCHHHC--EEEEEEE
Confidence            9999998774  4444443

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=93.60  E-value=0.077  Score=34.69  Aligned_cols=54  Identities=20%  Similarity=0.343  Sum_probs=36.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcC-CCceEEEccCccEEEEeE
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTD-TGGKYVVLSSGDLYVQIR   74 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~-~dgKY~vlpsGeL~Ir~v   74 (98)
                      .+..|.++.|.|.+...-.   ....|.+++..+..... ...+...+++|.|++..+
T Consensus        20 ~v~~G~~v~l~C~~~~~p~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   74 (212)
T 2v9r_A           20 IVSKGEPATLNCKAEGRPT---PTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRI   74 (212)
T ss_dssp             EECTTCCEEECCEEEEESC---CEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSC
T ss_pred             EEeCCCcEEEEEEcCCCCC---CEEEEEECCEEeeccccccccceEEecCCcEEEEEE
Confidence            6778999999999743222   25789999866644322 233566678888877554

>2h32_A Immunoglobulin IOTA chain; beta sheets, V and C-type IG folds, immune system; 2.70A {Homo sapiens}

Probab=93.59  E-value=0.076  Score=34.53  Aligned_cols=66  Identities=14%  Similarity=0.175  Sum_probs=40.8

Q ss_pred             eeecCeEEEEccCCCC--ccceeEEeEEccCC------eeee--cCc------CCCceEEEc--cC---ccEEEEeEeee
Q psy5692          19 VILGNTAVLRCQIPSY--MSEYIIVTSWIQDD------VNIY--LNT------DTGGKYVVL--SS---GDLYVQIRLSI   77 (98)
Q Consensus        19 VirGNtAVLkC~IPs~--V~d~V~V~SW~~Dd------~~I~--p~~------~~dgKY~vl--ps---GeL~Ir~v~~~   77 (98)
                      |..|.++.|.|.+.+.  ...  ....|.+..      ..++  ...      ...+||.+.  ++   .-|.|++++.+
T Consensus        12 v~~G~~vtL~C~~s~~~~~~~--~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~   89 (126)
T 2h32_A           12 SALGTTIRLTCTLRNDHDIGV--YSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPE   89 (126)
T ss_dssp             EETTCCEEEEEEECTTSCGGG--CEEEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ECCCCCEEEEEEecCCCcccc--ceEEEEEECCCCCCEEEEEEECCCCEEeCCCCCCCEEEEEeCCCCeEEEEECCCChh
Confidence            4489999999998654  222  346898743      2233  111      125799887  43   35999999887


Q ss_pred             cCCcceeeeee
Q psy5692          78 TGNLSVKKMKV   88 (98)
Q Consensus        78 ~~n~~~~~~~~   88 (98)
                      |.  ++=-|.+
T Consensus        90 Ds--G~Y~C~~   98 (126)
T 2h32_A           90 DE--AMYYCAM   98 (126)
T ss_dssp             GC--EEEEEEE
T ss_pred             HC--EEEEEEE
Confidence            74  3444443

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=93.58  E-value=0.0082  Score=40.89  Aligned_cols=57  Identities=14%  Similarity=0.235  Sum_probs=35.7

Q ss_pred             eeecCeEEEEccCCCCc--cceeEEeEEccCCeeeecC------cCCCceEEEccCccEEEEeEeeec
Q psy5692          19 VILGNTAVLRCQIPSYM--SEYIIVTSWIQDDVNIYLN------TDTGGKYVVLSSGDLYVQIRLSIT   78 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V--~d~V~V~SW~~Dd~~I~p~------~~~dgKY~vlpsGeL~Ir~v~~~~   78 (98)
                      |..|.+|.|.|.+..+-  .. ....+|.+++..+...      ...+|+|..  ++.|.|.+++..|
T Consensus        15 v~~G~~v~L~C~~~g~~~~p~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~--~~~L~I~~~~~~D   79 (207)
T 2vol_A           15 LTITLTPKVTCVVVDISKDDP-EVQFSWFVDDVEVHTAQTKPREEQFNSTFRS--VSELPIMHQDWLN   79 (207)
T ss_dssp             HSTTSCCEEEEEEEEECTTCC-CCEEEEEETTEEECCCEEECCCEETTTEEEE--EEEEECCHHHHHT
T ss_pred             hccCCceEEEEEEeCcccCCC-ceEEEEEECCccccccccCCCcCcCCCcEEE--EEEEEEehhHcCC
Confidence            77999999999986331  11 1257899998544211      113567643  4567777666554

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=93.49  E-value=0.1  Score=34.03  Aligned_cols=37  Identities=19%  Similarity=0.266  Sum_probs=25.6

Q ss_pred             EEeeeeceeecCeEEEEccCCCCccceeEEeEEccCCeee
Q psy5692          12 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI   51 (98)
Q Consensus        12 ~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I   51 (98)
                      ..... .+..|.++.|.|.+.+.-.  ....+|.+++..+
T Consensus        91 ~~~~~-~~~~g~~~~l~C~~~~~~p--~~~~~W~~~g~~~  127 (176)
T 1f2q_A           91 QASAE-VVMEGQPLFLRCHGWRNWD--VYKVIYYKDGEAL  127 (176)
T ss_dssp             EESCS-EEETTSCEEEEEEEGGGCC--EEEEEEEETTEEC
T ss_pred             cCCcc-eeeCCCCEEEEEEecCCCC--ceEEEEEECCEEE
Confidence            33444 6789999999999742211  2467899998665

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=93.48  E-value=0.054  Score=37.13  Aligned_cols=62  Identities=18%  Similarity=0.319  Sum_probs=37.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-------eee-e--------c--CcCCCceEEE-----ccCccEEEEeE
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-------VNI-Y--------L--NTDTGGKYVV-----LSSGDLYVQIR   74 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-------~~I-~--------p--~~~~dgKY~v-----lpsGeL~Ir~v   74 (98)
                      .+..|.++.|.|.+.+.-..-....+|.+++       ..+ +        +  .....+|..+     ..++.|.|.++
T Consensus       129 ~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v  208 (268)
T 3mj6_A          129 RVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTV  208 (268)
T ss_dssp             EEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSC
T ss_pred             ccccCCcEEEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcC
Confidence            5779999999999832212223356899842       111 1        1  1112234444     45788999998


Q ss_pred             eeecC
Q psy5692          75 LSITG   79 (98)
Q Consensus        75 ~~~~~   79 (98)
                      +.+|.
T Consensus       209 ~~~D~  213 (268)
T 3mj6_A          209 KESDQ  213 (268)
T ss_dssp             CGGGC
T ss_pred             ChhhC
Confidence            87775

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=93.47  E-value=0.084  Score=35.97  Aligned_cols=59  Identities=17%  Similarity=0.160  Sum_probs=39.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC------eeeecC----cCCCceEEEccC---ccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIYLN----TDTGGKYVVLSS---GDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd------~~I~p~----~~~dgKY~vlps---GeL~Ir~v~~~~~   79 (98)
                      .|..|.+++|.|.+.+....   ...|++..      ..+|..    ....+||.+.++   ..|.|++++.+|.
T Consensus        27 ~v~~G~sVtL~C~~s~~~~~---~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~sL~I~~v~~~Ds   98 (146)
T 2yc1_B           27 SVSPGERATLSCRASQSVRS---YLAWYQQKPGQAPRLLFSDASNRATGIPARFTGSGSGTDFTLTISSLEPEDF   98 (146)
T ss_dssp             EECTTSCEEEEEEESSCCTT---CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEecCCCEEEEEEECCCCCC---EEEEEEECCCCCCEEEEEeCCccCCCcCCCeEEecCCCEEEEEECCCCHHHC
Confidence            35589999999998655433   35898753      223321    123579988653   4699999998764

>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L

Probab=93.44  E-value=0.12  Score=34.46  Aligned_cols=77  Identities=17%  Similarity=0.178  Sum_probs=45.8

Q ss_pred             ceeeeceEEEEeeeeceeecCeEEEEccCCCCcc-ceeEEeEEccCC-----e-eeecC----cCCCceEEEccCc---c
Q psy5692           3 PVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMS-EYIIVTSWIQDD-----V-NIYLN----TDTGGKYVVLSSG---D   68 (98)
Q Consensus         3 AVV~Q~Yev~V~d~~~VirGNtAVLkC~IPs~V~-d~V~V~SW~~Dd-----~-~I~p~----~~~dgKY~vlpsG---e   68 (98)
                      +.|.|+=.  +    .|..|.+++|.|.+.+... +. ....|++..     . .++-.    ....+||.+..++   -
T Consensus         7 ~~v~q~~~--v----~v~~G~~vtL~C~~~~~~~~~~-~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rf~~~~~~~~~s   79 (135)
T 1p4b_L            7 AVVTQESA--L----TTSPGETVTLTCRSSTGAVTTS-NYASWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAA   79 (135)
T ss_dssp             CCEECCSE--E----EECTTCEEEEEEEETTSSCCGG-GCCEEEEEEGGGEEEEEEETTTEECTTCCTTEEEEEETTEEE
T ss_pred             eeEEECCc--E----EEcCCCCEEEEEEecCCCcCCC-CEEEEEEECCCCCCEEEEEeCCccCCCCCCCEEEEcCCCEEE
Confidence            35666532  2    3448999999999865431 11 236887653     1 22211    1235799886533   6


Q ss_pred             EEEEeEeeecCCcceeeeee
Q psy5692          69 LYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        69 L~Ir~v~~~~~n~~~~~~~~   88 (98)
                      |.|++++.+|.  ++=-|.+
T Consensus        80 L~I~~v~~~Ds--G~Y~C~~   97 (135)
T 1p4b_L           80 LTITGAQTEDE--AIYFCAL   97 (135)
T ss_dssp             EEEESCCGGGC--EEEEEEE
T ss_pred             EEECCCChhHC--EEEEEEE
Confidence            99999998764  4444444

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=93.44  E-value=0.03  Score=37.40  Aligned_cols=66  Identities=12%  Similarity=0.144  Sum_probs=38.8

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCCeeeecC--------cCCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN--------TDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~--------~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      ++.|.++.|.|.+..+-.. -...+|.+|+..|.+.        .+.+|.|.+.  ..|.|.+++.+|+  ..-.|.++
T Consensus       123 ~~~g~~v~l~C~~~g~~p~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~--s~L~i~~~~~~d~--G~Y~C~a~  196 (210)
T 1lk3_L          123 QLATGGASVVCLMNNFYPR-DISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMS--STLSLTKADYESH--NLYTCEVV  196 (210)
T ss_dssp             HHTTTEEEEEEEEEEEBSS-CCEEEEEETTEECCTTEEEEECCCCTTTCCEEEE--EEEEEEHHHHHTC--CEEEEEEE
T ss_pred             hccCCcEEEEEEEEeEeCC-ceEEEEEeCCccCCCCceEccCCccCCCCCEEEE--EEEEEChHHhccC--CcEEEEEE
Confidence            4569999999997532111 1246899998666432        1245566442  3577777665543  33445543

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=93.42  E-value=0.037  Score=38.24  Aligned_cols=65  Identities=20%  Similarity=0.205  Sum_probs=41.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-ecC-------cCCCceEEEcc----CccEEEEeEeeecCC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN-------TDTGGKYVVLS----SGDLYVQIRLSITGN   80 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~p~-------~~~dgKY~vlp----sGeL~Ir~v~~~~~n   80 (98)
                      .|..|.+|+|.|.+. .  . .....|++++     ..+ +..       ....+||.+..    ++.|.|++++.+|. 
T Consensus        10 ~v~~G~~v~L~C~~~-~--~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~-   84 (238)
T 1bec_A           10 VAVTGGKVTLSCQQT-N--N-HNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPSQT-   84 (238)
T ss_dssp             EEETTCCEEEEEEES-S--C-CSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCGGGC-
T ss_pred             EEeCCCcEEEEEEeC-C--C-CceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCcccC-
Confidence            467899999999973 2  1 3457898753     112 111       12368888863    35799999998774 


Q ss_pred             cceeeeee
Q psy5692          81 LSVKKMKV   88 (98)
Q Consensus        81 ~~~~~~~~   88 (98)
                       ..-.|.+
T Consensus        85 -G~Y~C~~   91 (238)
T 1bec_A           85 -SVYFCAS   91 (238)
T ss_dssp             -EEEEEEE
T ss_pred             -EEEEEEE
Confidence             3344444

>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=93.37  E-value=0.066  Score=33.55  Aligned_cols=68  Identities=18%  Similarity=0.171  Sum_probs=41.0

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-ecCc-------CCCceEEEcc-----CccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLNT-------DTGGKYVVLS-----SGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~p~~-------~~dgKY~vlp-----sGeL~Ir~v~~~~~   79 (98)
                      .|..|.+|+|.|.+......  ....|.+..     ..| +-..       ...+||.+..     +..|.|++++.+|.
T Consensus        11 ~~~~G~~vtL~C~~~~~~~~--~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Ds   88 (116)
T 1tvd_A           11 TVASGSEVVLLCTYDTVYSN--PDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTEDS   88 (116)
T ss_dssp             EEETTCCEEECCEEECCSSS--CCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCGGGC
T ss_pred             EEecCCeEEEEeEeEcCCCC--cEEEEEEeCCCCCcEEEEEECCcccccCcccCCCEEEEEecCCCEEEEEEccCChHHC
Confidence            35589999999997432222  236887653     122 2111       1268998752     23699999998774


Q ss_pred             Ccceeeeeeh
Q psy5692          80 NLSVKKMKVE   89 (98)
Q Consensus        80 n~~~~~~~~~   89 (98)
                        +.=-|.+.
T Consensus        89 --G~Y~C~~~   96 (116)
T 1tvd_A           89 --ATYYCAFT   96 (116)
T ss_dssp             --EEEEEEEE
T ss_pred             --EEEEEEEe
Confidence              44455543

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=93.33  E-value=0.045  Score=37.06  Aligned_cols=33  Identities=18%  Similarity=0.367  Sum_probs=24.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIY   52 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~   52 (98)
                      .|..|.++.|.|.++..-..  ....|.+++..|.
T Consensus        12 ~v~~G~~v~l~C~~~~~~~~--~~~~W~~~g~~~~   44 (262)
T 3rjd_A           12 SVFQEETVTLHCEVLHLPGS--SSTQWFLNGTATQ   44 (262)
T ss_dssp             EEETTCCEEEEEECSSCCCT--TCEEEEETTEECS
T ss_pred             EeeCCCeEEEEEECCCCCCC--ceEEEEECCEEee
Confidence            57799999999998654332  2457999886653

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=93.31  E-value=0.059  Score=38.23  Aligned_cols=62  Identities=13%  Similarity=0.104  Sum_probs=40.4

Q ss_pred             ceeecCeEEEEccCCCCccc---eeEEeEEccCC-----e-eeecC----cCCCceEEEccC---ccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSE---YIIVTSWIQDD-----V-NIYLN----TDTGGKYVVLSS---GDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d---~V~V~SW~~Dd-----~-~I~p~----~~~dgKY~vlps---GeL~Ir~v~~~~~   79 (98)
                      .|..|.+|+|.|.+...-.+   -.....|.+++     . .++..    ...++||.+..+   +.|.|++++.+|.
T Consensus        16 ~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~Ds   93 (264)
T 2gjj_A           16 PVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIGSVKAEDL   93 (264)
T ss_dssp             EEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEECCCCHHHC
Confidence            46689999999997543310   13457898742     1 23321    123689998753   4899999998775

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=93.29  E-value=0.052  Score=37.80  Aligned_cols=46  Identities=15%  Similarity=0.131  Sum_probs=30.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~   78 (98)
                      .|..|.++.|.|.+..       ..+|.+++..++..        ....+.|.|.+++..|
T Consensus        23 ~v~~G~~v~l~C~~~~-------~i~W~~~~~~~~~~--------~~~~~~L~i~~~~~~d   68 (290)
T 2o26_X           23 IVEAGDTLSLTCIDPD-------FVRWTFKTYFNEMV--------ENKKNEWIQEKAEATR   68 (290)
T ss_dssp             EEETTSCEEEEEECTT-------EEEEEEECSSSCEE--------EECSSEEEETTCCGGG
T ss_pred             EEcCCCcEEEEECCCC-------cEEEecCCcceeee--------cCCCceEEEeccCHHh
Confidence            4678999999999875       67899998443111        1122566666665554

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=93.20  E-value=0.033  Score=38.95  Aligned_cols=59  Identities=15%  Similarity=0.067  Sum_probs=37.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eeee-c--C---cCCCceEEEc-----cCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIY-L--N---TDTGGKYVVL-----SSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I~-p--~---~~~dgKY~vl-----psGeL~Ir~v~~~~~   79 (98)
                      .|..|.+++|.|.+...-   .....|++..     ..|. .  .   ...++||.+.     .++.|.|++++.+|.
T Consensus        14 ~v~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~Ds   88 (256)
T 3tf7_C           14 TVSEGASLQLRCKYSYSA---TPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSDS   88 (256)
T ss_dssp             EEETTSCEEECCEEECSS---CCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCGGGC
T ss_pred             EecCCCeEEEEEEeCCCC---CceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCcccC
Confidence            456899999999985441   2345787632     2221 1  0   1136788883     345699999998874

>2wzp_D Camelid VHH5; baseplate, viral protein; 2.60A {Lama glama} PDB: 2bse_D

Probab=93.12  E-value=0.15  Score=32.40  Aligned_cols=69  Identities=14%  Similarity=0.153  Sum_probs=42.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----e-eeecCc---------CCCceEEEcc-----CccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----V-NIYLNT---------DTGGKYVVLS-----SGDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~-~I~p~~---------~~dgKY~vlp-----sGeL~Ir~v~~~   77 (98)
                      .|..|.++.|.|.+.+.... -....|.+..     . .++-..         ...+||.+..     +.-|.|++++.+
T Consensus        11 ~~~~G~~vtL~C~~~~~~~~-~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~   89 (123)
T 2wzp_D           11 LVQAGGSLRLSCTASRRTGS-NWCMGWFRQLAGKEPELVVALNFDYDMTYYADSVKGRFTVSRDSGKNTVYLQMNSLKPE   89 (123)
T ss_dssp             EEETTCCEEEEEEESSCCSS-SEEEEEEECCSSSSCEEEEEEETTTTEEEECGGGTTTEEEEEETTEEEEEEEECSCCGG
T ss_pred             EEcCCCcEEEEEEecCCCcc-CcEEEEEEECCCCCCEEEEEEEcCCCceecCcccCCCEEEEEeCCCCEEEEEECCCCHH
Confidence            45589999999998643212 2457898753     1 222111         1257998863     246999999987


Q ss_pred             cCCcceeeeeeh
Q psy5692          78 TGNLSVKKMKVE   89 (98)
Q Consensus        78 ~~n~~~~~~~~~   89 (98)
                      |.  +.=-|.+.
T Consensus        90 Ds--g~Y~C~~~   99 (123)
T 2wzp_D           90 DT--AIYYCAAR   99 (123)
T ss_dssp             GC--EEEEEEEE
T ss_pred             HC--EEEEEEEe
Confidence            74  44455543

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=93.11  E-value=0.034  Score=38.87  Aligned_cols=60  Identities=12%  Similarity=0.148  Sum_probs=39.0

Q ss_pred             ceeecCeEEEEccCCCCc-cceeEEeEEccCC-----eee-ecC--------cCCCceEEEcc-----CccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYM-SEYIIVTSWIQDD-----VNI-YLN--------TDTGGKYVVLS-----SGDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V-~d~V~V~SW~~Dd-----~~I-~p~--------~~~dgKY~vlp-----sGeL~Ir~v~~~   77 (98)
                      .|..|.+++|.|.+..+- ..  ....|.+++     ..| +-.        ...++||.+..     ++.|.|++++.+
T Consensus        11 ~v~~G~~v~L~C~~~g~p~~~--~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   88 (257)
T 1f3r_B           11 LVRPSETLSLTCTVSGFSLTS--FSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTD   88 (257)
T ss_dssp             EECTTSEEEEEEEEESSCTTT--SCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCTT
T ss_pred             cccCCceEEEEEEEecccCCC--ccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCcc
Confidence            466899999999985432 12  236787752     222 111        12368999875     348999999987


Q ss_pred             cC
Q psy5692          78 TG   79 (98)
Q Consensus        78 ~~   79 (98)
                      |.
T Consensus        89 Ds   90 (257)
T 1f3r_B           89 DT   90 (257)
T ss_dssp             CC
T ss_pred             cC
Confidence            74

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=93.11  E-value=0.073  Score=41.68  Aligned_cols=70  Identities=11%  Similarity=-0.008  Sum_probs=45.0

Q ss_pred             ceeecCeEEEEccCCCCc-cceeEEeEEccCC------eeeecCc--------CCCceEEEcc-----CccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYM-SEYIIVTSWIQDD------VNIYLNT--------DTGGKYVVLS-----SGDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V-~d~V~V~SW~~Dd------~~I~p~~--------~~dgKY~vlp-----sGeL~Ir~v~~~   77 (98)
                      .|..|.+|+|.|.+..+- .+......|++..      ..+|-..        ...+||.++.     +..|.|++++.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   90 (512)
T 1zvo_C           11 LVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLRSMSAA   90 (512)
T ss_pred             EEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEECcCCHH
Confidence            566899999999986542 2223567898752      1222111        2358999874     257999999987


Q ss_pred             cCCcceeeeeeh
Q psy5692          78 TGNLSVKKMKVE   89 (98)
Q Consensus        78 ~~n~~~~~~~~~   89 (98)
                      |.  +.-.|.+.
T Consensus        91 Ds--g~Y~C~~~  100 (512)
T 1zvo_C           91 DT--AMYYCARG  100 (512)
T ss_pred             HC--EEEEEEEE
Confidence            74  44555543

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=93.10  E-value=0.034  Score=38.25  Aligned_cols=66  Identities=12%  Similarity=0.150  Sum_probs=40.2

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCCeeeecC--------cCCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN--------TDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~--------~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      ++.|.++.|.|.+..+-..- .-.+|.+++..|.+.        .+.+|.|.+  ++.|.|.+++.+|+  ..-.|.+.
T Consensus       166 ~~~g~~v~l~C~~~g~~p~~-~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~--~~~L~i~~~~~~d~--G~Y~C~a~  239 (254)
T 2c1o_A          166 QLTSGGASVVCFLNNFYPKD-INVKWKIDGSERQNGVLNSWTDQDSKDSTYSM--SSTLTLTKDEYERH--NSYTCEAT  239 (254)
T ss_dssp             HHHTTEEEEEEEEEEEBSSC-CEEEEEESSSEECTTEEEEECCCCTTTCCEEE--EEEEEEEHHHHHTC--CEEEEEEE
T ss_pred             hccCCcEEEEEEEecccCCC-cEEEEEECCCcccCcceeccccccCCCCcEEE--EEEEEeccccccCC--CeEEEEEE
Confidence            45688999999985321111 237899998666443        134566654  35788887776553  33445443

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=93.09  E-value=0.038  Score=39.76  Aligned_cols=61  Identities=15%  Similarity=0.146  Sum_probs=39.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee---ecC-------cCCCceEEEcc-----CccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI---YLN-------TDTGGKYVVLS-----SGDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I---~p~-------~~~dgKY~vlp-----sGeL~Ir~v~~~   77 (98)
                      .|..|.+|+|.|.+..+-.+ .....|++++     ..|   ++.       ....+||.+..     ++.|.|++++.+
T Consensus        17 ~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   95 (261)
T 2xqy_G           17 LVKPGASVKMSCKASGYSFT-SYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSLTSE   95 (261)
T ss_dssp             EECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             EEcCCCCEEEEEEeCCcccC-CceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCCCcc
Confidence            56689999999998543211 2346898763     111   110       11368999875     357999999988


Q ss_pred             cC
Q psy5692          78 TG   79 (98)
Q Consensus        78 ~~   79 (98)
                      |.
T Consensus        96 Ds   97 (261)
T 2xqy_G           96 DS   97 (261)
T ss_dssp             GC
T ss_pred             cC
Confidence            74

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=93.09  E-value=0.06  Score=38.50  Aligned_cols=56  Identities=18%  Similarity=0.106  Sum_probs=34.3

Q ss_pred             ceeecCeEEEEccCCCC--ccceeEEeEEccCCeeeecCcCCCceEEEccCc-cEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSY--MSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG-DLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~--V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG-eL~Ir~v~~~~~   79 (98)
                      .+..|.++.|.|.....  ...-.....|.+|+..|-      +++.+.++| .|.|.+++.+|.
T Consensus       131 ~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~------~~~~~~~~~~~L~i~~v~~~d~  189 (349)
T 4dep_C          131 LYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQ------NFNNVIPEGMNLSFLIALISNN  189 (349)
T ss_dssp             EETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECC------SCSSEEEETTEEEEESCCGGGC
T ss_pred             eeecCccEEEEcCCCcccccCCCCceEEEeeCCEECC------CccceeecCCEEEEeeeeecCC
Confidence            45689999999974222  112234568999987652      223333444 488888777653

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=93.07  E-value=0.089  Score=33.22  Aligned_cols=34  Identities=18%  Similarity=0.251  Sum_probs=20.8

Q ss_pred             ceeecCeEEEEccCCCCccc--eeEEeEEccCCeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSE--YIIVTSWIQDDVNI   51 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d--~V~V~SW~~Dd~~I   51 (98)
                      .|..|.+++|.|..+.....  --....|.+|+..+
T Consensus        18 ~v~~G~~VtL~C~~~~~~~~~~~~~~~~w~k~g~~l   53 (108)
T 4hwn_A           18 EPQAGSPMTLSCQTKLPLQRSAARLLFSFYKDGRIV   53 (108)
T ss_dssp             SCBTTCCEEEEEEC---------CCEEEEEETTEEE
T ss_pred             cCCCCCcEEEEEcccCCCCCcCcceEEEEEECCcCc
Confidence            47889999999997532111  00126799998655

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=93.02  E-value=0.038  Score=42.19  Aligned_cols=57  Identities=14%  Similarity=0.083  Sum_probs=40.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCc-------cEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG-------DLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG-------eL~Ir~v~~~~~   79 (98)
                      .+..|.++.|.|.+..+-...  ..+|.+++..|.+.   ..+|..+.++       .|.|++++.+|.
T Consensus       324 ~v~~G~~v~l~C~~~g~P~p~--~v~W~k~g~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  387 (524)
T 2ec8_A          324 FVNDGENVDLIVEYEAFPKPE--HQQWIYMNRTFTDK---WEDYPKSENESNIRYVSELHLTRLKGTEG  387 (524)
T ss_dssp             EECTTCCEEEEEEEEEESCCC--EEEEESSSCBCSSS---BCCEESCCSSSCCEEEEEEEECSCCGGGC
T ss_pred             EEcCCCcEEEEEEEeecCCCc--EEEEEECCeeccCC---ccceeEEccCCCceeEEEEEEeecCcccC
Confidence            678999999999974333322  47899999766442   2377776554       799999887764

>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B, IG-beta, BCR, immunoglobulin domain, protein binding; 3.20A {Homo sapiens}

Probab=93.02  E-value=0.056  Score=36.38  Aligned_cols=55  Identities=18%  Similarity=0.122  Sum_probs=38.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccC-C-----eeeecCcCCCceEEEccCc---cEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQD-D-----VNIYLNTDTGGKYVVLSSG---DLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~D-d-----~~I~p~~~~dgKY~vlpsG---eL~Ir~v~~~~~   79 (98)
                      .|..|.++.|.|.+.+. .   ....|.+. .     ..|.   ...+||.+..++   .|.|++++.+|.
T Consensus        29 ~v~~G~svtL~C~~s~~-~---~~v~Wyrq~~~g~~~~~l~---~~~~rf~~~~~~~~~~L~I~~~~~~Ds   92 (134)
T 3kg5_A           29 ARKRGFTVKMHCYMNSA-S---GNVSWLWKQEMDENPQQLK---LEKGRMEESQNESLATLTIQGIRFEDN   92 (134)
T ss_dssp             EEETTCCEEEEEECCCT-T---CCCEEEEESSSSSCCEECC---CCTTTEEEEECSSEEEEEECSCCTTTC
T ss_pred             EEeCCCCEEEEEEECCC-C---ceEEEEEECCCCCCcEEEE---EECCeEEEEccCCEEEEEECCCCcCcC
Confidence            45689999999998754 2   34689886 2     1221   135799886544   599999988774

>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C

Probab=92.99  E-value=0.068  Score=33.44  Aligned_cols=68  Identities=19%  Similarity=0.217  Sum_probs=41.6

Q ss_pred             ceeecCeEEEEccCCCCcc---ceeEEeEEccCC------eeeecC----cCCCceEEEccCc---cEEEEeEeeecCCc
Q psy5692          18 NVILGNTAVLRCQIPSYMS---EYIIVTSWIQDD------VNIYLN----TDTGGKYVVLSSG---DLYVQIRLSITGNL   81 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~---d~V~V~SW~~Dd------~~I~p~----~~~dgKY~vlpsG---eL~Ir~v~~~~~n~   81 (98)
                      .|..|.++.|.|.+.....   +. ....|.+..      ..++..    ....+||.+..++   .|.|++++.+|.  
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~~~~-~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~Ds--   88 (113)
T 1dlf_L           12 PVSLGNQASISCRSSQSLVHSNGN-TYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDL--   88 (113)
T ss_dssp             EECTTCCEEEEEEESSCCBCTTSC-BCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGC--
T ss_pred             EEcCCCCEEEEEEccccccccCCC-ceEEEEEECCCCCCeEEEEecCccCCCCCCCEEEEccCCEEEEEECCCChHHC--
Confidence            3458999999999864431   11 236897643      223321    1235789886433   599999998774  


Q ss_pred             ceeeeee
Q psy5692          82 SVKKMKV   88 (98)
Q Consensus        82 ~~~~~~~   88 (98)
                      +.=-|.+
T Consensus        89 G~Y~C~~   95 (113)
T 1dlf_L           89 GVYFCSQ   95 (113)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            3344443

>1sjv_A R9; camelids antibody, domain swapping, heavy chain antibody, AN; 1.94A {Lama glama} SCOP: b.1.1.1

Probab=92.99  E-value=0.11  Score=32.46  Aligned_cols=69  Identities=13%  Similarity=0.096  Sum_probs=41.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-ecC--------cCCCceEEEcc-----CccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN--------TDTGGKYVVLS-----SGDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~p~--------~~~dgKY~vlp-----sGeL~Ir~v~~~~   78 (98)
                      .|..|.+|.|.|.+.+.... -....|.+..     ..| +-.        ....+||.+..     +.-|.|++++.+|
T Consensus        11 ~~~~G~~vtL~C~~~~~~~~-~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~D   89 (114)
T 1sjv_A           11 LVQAGESLKLSCAASGNTFS-GGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPED   89 (114)
T ss_dssp             CCCTTCCEEEEECCCC------CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGG
T ss_pred             EEcCCCCEEEEEEEcCcccc-CCeEEEEEECCCCCCEEEEEEcCCCcceeCcccCCcEEEEEeCCCCEEEEEECCCCHHH
Confidence            56689999999998643211 1346898743     122 211        11357998863     2369999999877


Q ss_pred             CCcceeeeeeh
Q psy5692          79 GNLSVKKMKVE   89 (98)
Q Consensus        79 ~n~~~~~~~~~   89 (98)
                      .  +.=-|.+.
T Consensus        90 s--G~Y~C~~~   98 (114)
T 1sjv_A           90 T--AVYYCYTH   98 (114)
T ss_dssp             C--SEEEEEEC
T ss_pred             C--EEEEEeEE
Confidence            4  44455543

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=92.98  E-value=0.036  Score=37.65  Aligned_cols=69  Identities=16%  Similarity=0.104  Sum_probs=43.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee---ec-------CcCCCceEEEccC-----ccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI---YL-------NTDTGGKYVVLSS-----GDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I---~p-------~~~~dgKY~vlps-----GeL~Ir~v~~~   77 (98)
                      .|..|.++.|.|.+..+-..- ....|.+++     ..+   ++       .....+||.+..+     +.|.|++++.+
T Consensus       130 ~v~~G~~v~L~C~~~g~p~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~  208 (240)
T 1moe_A          130 LVEPGASVKLSCTASGFNIKD-TYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSE  208 (240)
T ss_dssp             EECTTCCEEEEEEEESSCGGG-SCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EEeCCCcEEEEEEEcCccCCC-CEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHH
Confidence            567899999999986443211 246898852     111   11       0113578888754     47999999988


Q ss_pred             cCCcceeeeeeh
Q psy5692          78 TGNLSVKKMKVE   89 (98)
Q Consensus        78 ~~n~~~~~~~~~   89 (98)
                      |.  ..-.|.+.
T Consensus       209 D~--G~Y~C~a~  218 (240)
T 1moe_A          209 DT--AVYYCAPF  218 (240)
T ss_dssp             GC--EEEEEEEC
T ss_pred             HC--EEEEEEEE
Confidence            74  44555554

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=92.98  E-value=0.042  Score=43.11  Aligned_cols=55  Identities=20%  Similarity=0.326  Sum_probs=40.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccC---ccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS---GDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlps---GeL~Ir~v~~~~~   79 (98)
                      .+..|.++.|.|.+..+-.   -..+|.+++..|.+    +.+|.+...   +.|+|.+++.+|.
T Consensus       395 ~~~~G~~v~l~C~~~g~P~---p~v~W~k~g~~l~~----~~~~~~~~~~~~~~L~i~~v~~~D~  452 (570)
T 3b43_A          395 ETLKGADVHLECELQGTPP---FQVSWHKDKRELRS----GKKYKIMSENFLTSIHILNVDSADI  452 (570)
T ss_dssp             EECTTCCEEEEEEEESSSS---CCCEEEETTEECCS----SSSEEEEEETTEEEEEECSCCGGGC
T ss_pred             eecCCCEEEEEEEEecCCC---CEEEEEECCEECcC----CCCEEEEEcCCEEEEEECCCChhhC
Confidence            4568999999999743322   23689999977644    568888765   3688998887764

>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist peptide T-cell vaccines, transmembrane, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A

Probab=92.97  E-value=0.088  Score=36.71  Aligned_cols=67  Identities=18%  Similarity=0.307  Sum_probs=42.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC------eeeecCc----CCCceEEEc--c---CccEEEEeEeeecCCcc
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIYLNT----DTGGKYVVL--S---SGDLYVQIRLSITGNLS   82 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd------~~I~p~~----~~dgKY~vl--p---sGeL~Ir~v~~~~~n~~   82 (98)
                      .|..|.+|.|.|.+.....   ....|++..      ..+|-..    ...|||.+.  +   +..|.|++++.+|.  +
T Consensus        11 ~v~~G~~v~L~C~~s~~~~---~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Ds--g   85 (203)
T 2bnu_A           11 SVPEGENLVLNCSFTDSAI---YNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDS--A   85 (203)
T ss_dssp             EEETTCCEEEEEEESCCCE---EEEEEEEECTTSCEEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGC--E
T ss_pred             EEeCCCCEEEEEEECCCCc---ceEEEEEeCCCCCcEEEEEECCCCccccCCCeEEEEcCCCCEEEEEEeeCCcccC--e
Confidence            4568999999999864432   357998743      1233221    136899886  2   24699999988774  4


Q ss_pred             eeeeeeh
Q psy5692          83 VKKMKVE   89 (98)
Q Consensus        83 ~~~~~~~   89 (98)
                      +=.|.+.
T Consensus        86 ~Y~C~~~   92 (203)
T 2bnu_A           86 TYLCAVR   92 (203)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            4445443

>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens}

Probab=92.96  E-value=0.12  Score=33.61  Aligned_cols=59  Identities=7%  Similarity=0.156  Sum_probs=38.9

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCC------eeeecCcC----CCceEEEc--c-Cc--cEEEEeEeeecC
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIYLNTD----TGGKYVVL--S-SG--DLYVQIRLSITG   79 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd------~~I~p~~~----~dgKY~vl--p-sG--eL~Ir~v~~~~~   79 (98)
                      |..|.++.|.|........+  ...|.+..      ..|+....    ..|||.+.  + .|  -|.|++++.+|.
T Consensus        14 ~~~G~svtL~C~~s~~~~~~--~~~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~l~~~Ds   87 (124)
T 2nms_A           14 GLERGSLTVQCVYRSGWETY--LKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRTFTVTMEDLMKTDA   87 (124)
T ss_dssp             EETTCCEEEEEEECTTCTTS--EEEEEESSSSTTCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EeCCCCEEEEeEEeCCcccc--cEEEEeCCCCCCceEEEEcCCcccceeCCCEEEEEcCcCCEEEEEEeCCCHHHC
Confidence            45899999999986554443  46798764      23343211    35788875  2 22  588999998874

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=92.92  E-value=0.078  Score=41.55  Aligned_cols=55  Identities=22%  Similarity=0.469  Sum_probs=40.0

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEc---cCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL---SSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vl---psGeL~Ir~v~~~~~   79 (98)
                      .+..|.++.|.|.+...-.   ...+|.+|+..|.+    +++|.+.   .++.|.|.+++.+|.
T Consensus       208 ~v~~G~~~~l~C~~~g~p~---p~i~W~k~g~~i~~----~~~~~~~~~~~~~~L~i~~v~~~D~  265 (570)
T 3b43_A          208 DLALGESGTFKCHVTGTAP---IKITWAKDNREIRP----GGNYKMTLVENTATLTVLKVTKGDA  265 (570)
T ss_dssp             CCBSBSCEEEEEEEESSSC---CEEEEEETTEECCT----TSSEEEEEETTEEEEEESSBCGGGC
T ss_pred             EecCCCeEEEEEEEEECCC---CEEEEEECCEECcC----CCcEEEEEECCEEEEEEcccCcccC
Confidence            4678999999999854322   24689999977755    5666553   247899999988774

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=92.92  E-value=0.08  Score=36.78  Aligned_cols=59  Identities=14%  Similarity=0.257  Sum_probs=32.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccC---C--eee-ecC---------cCCC-ceEEEc----cCccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQD---D--VNI-YLN---------TDTG-GKYVVL----SSGDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~D---d--~~I-~p~---------~~~d-gKY~vl----psGeL~Ir~v~~~   77 (98)
                      .|..|.+++|.|.+...-   .....|++.   .  ..+ +..         .... +++.+.    .++.|.|++++.+
T Consensus        13 ~v~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~   89 (259)
T 3omz_A           13 IRQTGSSAEITCDLAEGS---TGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLIEN   89 (259)
T ss_dssp             EEETTCCEEEECCC--------CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEESSCCGG
T ss_pred             EecCCCcEEEEEEEccCC---CcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEECCCCcc
Confidence            567899999999986543   335789872   2  222 111         0111 333332    2446999999988


Q ss_pred             cC
Q psy5692          78 TG   79 (98)
Q Consensus        78 ~~   79 (98)
                      |.
T Consensus        90 Ds   91 (259)
T 3omz_A           90 DS   91 (259)
T ss_dssp             GC
T ss_pred             cC
Confidence            73

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=92.89  E-value=0.058  Score=38.58  Aligned_cols=61  Identities=10%  Similarity=0.049  Sum_probs=38.8

Q ss_pred             ceeecCeEEEEccCCCCcc--------ceeEEeEEccCCee---eecCc--CCCceEEEccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMS--------EYIIVTSWIQDDVN---IYLNT--DTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~--------d~V~V~SW~~Dd~~---I~p~~--~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      .|..|.+++|.|.++..-.        +-.....|.+++..   ..+..  ..+.++ ....|.|.|++++.+|.
T Consensus        18 ~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~D~   91 (349)
T 4dep_C           18 QVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRI-SKEKDVLWFRPTLLNDT   91 (349)
T ss_dssp             EEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCE-EEETTEEEESSCCGGGC
T ss_pred             EEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceE-eecCCEEEEccCChhhC
Confidence            4789999999999875321        11256789998721   11111  123344 34678899999888774

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=92.88  E-value=0.085  Score=33.74  Aligned_cols=33  Identities=21%  Similarity=0.287  Sum_probs=24.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIY   52 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~   52 (98)
                      .+..|.++.|.|.+...-.  .....|.+++..+.
T Consensus        15 ~v~~G~~v~l~C~~~~~p~--~~~~~W~~~g~~~~   47 (170)
T 3ry4_A           15 NVLQEDSVTLTCQGARSPE--SDSIQWFHNGNLIP   47 (170)
T ss_dssp             EEETTCEEEEEEESCCCSS--SSCEEEEETTEECT
T ss_pred             EEECCCcEEEEEEecCCCC--cceEEEEECCeEcc
Confidence            4779999999999876521  22468999886653

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=92.88  E-value=0.039  Score=32.88  Aligned_cols=55  Identities=11%  Similarity=0.079  Sum_probs=36.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC--eeeecCcCCCceEEE-ccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VNIYLNTDTGGKYVV-LSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd--~~I~p~~~~dgKY~v-lpsGeL~Ir~v~~~~~   79 (98)
                      .+..|.++.|.|.+..+-.-   ...|.+++  ..|.+    +.++.. ...+.|.|++++.+|.
T Consensus        13 ~v~~G~~~~l~C~~~g~P~p---~i~W~k~~~~~~~~~----~~~~~~~~~~~~L~i~~~~~~D~   70 (93)
T 1wit_A           13 KIKAGFTHNLEVDFIGAPDP---TATWTVGDSGAALAP----ELLVDAKSSTTSIFFPSAKRADS   70 (93)
T ss_dssp             EECTTBCCEEEEEEECCSSC---EEEEECSTTTCBCST----TSEEEEETTEEEEECTTBCGGGC
T ss_pred             EEeCCCEEEEEEEEEEcCCC---EEEEEECCCCcccCC----cEEEEecCCEEEEEECCCChhcC
Confidence            56789999999998544433   36899998  66532    122222 2346688888887764

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=92.86  E-value=0.058  Score=38.20  Aligned_cols=61  Identities=11%  Similarity=0.167  Sum_probs=40.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-e--c-------CcCCCceEEEccCc-----cEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-Y--L-------NTDTGGKYVVLSSG-----DLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~--p-------~~~~dgKY~vlpsG-----eL~Ir~v~~~   77 (98)
                      .|..|.++.|.|.+..+-.. .....|.+++     ..| +  +       .....+||.+..++     .|.|.+++.+
T Consensus       145 ~v~~G~~v~L~C~~~g~~~~-~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~  223 (276)
T 3auv_A          145 LVQPGGSLRLSCAASGFTIS-DYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAE  223 (276)
T ss_dssp             EECTTCCEEEEEEEESSCGG-GSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             EecCCCeEEEEEEecCccCC-CCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChh
Confidence            67789999999998543211 1347898852     111 1  1       11246799987643     7999999988


Q ss_pred             cC
Q psy5692          78 TG   79 (98)
Q Consensus        78 ~~   79 (98)
                      |.
T Consensus       224 Ds  225 (276)
T 3auv_A          224 DT  225 (276)
T ss_dssp             GC
T ss_pred             HC
Confidence            75

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=92.83  E-value=0.11  Score=36.60  Aligned_cols=61  Identities=15%  Similarity=0.199  Sum_probs=39.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC----e-ee-ecC---------cCCCceEEEccC-----ccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD----V-NI-YLN---------TDTGGKYVVLSS-----GDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd----~-~I-~p~---------~~~dgKY~vlps-----GeL~Ir~v~~~   77 (98)
                      .|..|.+|+|.|.++.+-.. -....|.+++    . .| +..         ...++||.+..+     +.|.|++++.+
T Consensus        11 ~v~~G~~v~L~C~~~g~~~~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   89 (256)
T 1nqb_A           11 LVKPGASVKLSCKASGYTFT-SYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSE   89 (256)
T ss_dssp             EECTTCCEEEEEEECSSCGG-GSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eecCCCcEEEEEEeccccCC-CceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcCChh
Confidence            56689999999998654211 1245788742    1 11 111         123589998753     47999999988


Q ss_pred             cC
Q psy5692          78 TG   79 (98)
Q Consensus        78 ~~   79 (98)
                      |.
T Consensus        90 Ds   91 (256)
T 1nqb_A           90 DS   91 (256)
T ss_dssp             GC
T ss_pred             hC
Confidence            74

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=92.82  E-value=0.061  Score=35.69  Aligned_cols=57  Identities=19%  Similarity=0.320  Sum_probs=35.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEE----EEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLY----VQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~----Ir~v~~~~   78 (98)
                      .+..|.++.|.|.+...-.   ....|.+++..+...... .......+|.|+    |++++..|
T Consensus        20 ~v~~G~~v~L~C~~~g~p~---~~v~W~~~g~~~~~~~~~-~~~~~~~~~~~~~~l~i~~v~~~d   80 (217)
T 2vr9_A           20 VVKKNEPATLNCKVEGKPE---PTIEWFKDGEPVSTNEKK-SHRVQFKDGALFFYRTMQGKKEQD   80 (217)
T ss_dssp             EECTTSCEEECCEEECSSC---CEEEEEETTEECCCSSSS-SSEEECTTSCEEESSCCBSSSCBC
T ss_pred             EEeCCCcEEEEEEcCCCCC---CeEEEEECCcCccCCCcc-ceeEEecCCceEEEEEeccCCccc
Confidence            5678999999999854322   247899998776543222 233345566663    45555444

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=92.81  E-value=0.12  Score=32.96  Aligned_cols=50  Identities=12%  Similarity=0.145  Sum_probs=31.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~   78 (98)
                      .+..|.++.|.|.+.+.-.  ....+|.+++..+-..         ..++.|.|.+++.+|
T Consensus        96 ~~~~g~~~~l~C~~~~~~p--~~~~~W~~~g~~~~~~---------~~~~~L~i~~v~~~d  145 (170)
T 3ry4_A           96 EFQEGETIMLRCHSWKDKP--LVKVTFFQNGKSQKFS---------HLDPTFSIPQANHSH  145 (170)
T ss_dssp             EECTTCCEEEEEEEGGGCC--EEEEEEEETTEEEEEE---------SSCCEEEESSCCGGG
T ss_pred             eeecCCeEEEEEECCCCCC--CceEEEEECCeEcccc---------CCCCeEEEEeccccC
Confidence            5678999999999742211  2567899988655321         124556666666554

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=92.75  E-value=0.016  Score=38.76  Aligned_cols=65  Identities=14%  Similarity=0.191  Sum_probs=40.4

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCCeeeecCc-------CCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT-------DTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~-------~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      ++.|.++.|.|.+..+-.. ....+|.+++..|.+..       +.+| |.+.  +.|.|.+++.+|+  ..-.|.+.
T Consensus       125 ~~~g~~v~L~C~~~g~~p~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~-~~~~--s~L~i~~~~~~d~--G~Y~C~a~  196 (212)
T 1nfd_E          125 ELRTNKATLVCLVNDFYPG-SATVTWKANGATINDGVKTTKPSKQGQN-YMTS--SYLSLTADQWKSH--NRVSCQVT  196 (212)
T ss_dssp             HHHTTEECCCEEEEEEBSS-CCEEEEEETTEEECSSCBCCCCBCSSSC-EEEE--EBCCEEHHHHHTC--SCEEEEEE
T ss_pred             hccCCceEEEEEEEeeECC-ccEEEEEECCeEcCCCeecCCceecCCC-ceEE--EEEEEchhhcCCC--CeEEEEEE
Confidence            4579999999997633111 13579999987665431       2345 6543  6688888776663  34445443

>3bdb_A Novel immune-type receptor 11; immunoglobulin variable domain-like beta-sandwich, stalk region, immune system; 2.80A {Ictalurus punctatus}

Probab=92.73  E-value=0.11  Score=34.33  Aligned_cols=66  Identities=11%  Similarity=0.155  Sum_probs=41.6

Q ss_pred             ceeecCeEEEEccCC-CCccceeEEeEEccCC-----e-eee--cCc-------CC-CceEEEccCc---cEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIP-SYMSEYIIVTSWIQDD-----V-NIY--LNT-------DT-GGKYVVLSSG---DLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IP-s~V~d~V~V~SW~~Dd-----~-~I~--p~~-------~~-dgKY~vlpsG---eL~Ir~v~~~   77 (98)
                      .|..|.+|+|.|... .+...   ...|.+..     . .++  ...       +. .+||.+..++   -|.|++++.+
T Consensus        10 ~v~~G~~vtL~C~~s~~~~~~---~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~L~I~~~~~~   86 (137)
T 3bdb_A           10 TVKRGENVTMECSMSKVTNKN---NLAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMTVNDQKFDLNIIGARED   86 (137)
T ss_dssp             CCCTTCEECCCCBCTTCCCGG---GBEEEEECTTBCCEEEEEECSSSSCEEECTTCCCTTEEEEESSSBEEEEEESCCST
T ss_pred             EEcCCCCEEEEeecCCCcCcc---eEEEEEECCCCCCEEEEEEEcCCCcceecCcccCCcEEEEecCCEEEEEECCCCHH
Confidence            456899999999986 44433   36888753     1 222  111       12 5899886544   6999999987


Q ss_pred             cCCcceeeeee
Q psy5692          78 TGNLSVKKMKV   88 (98)
Q Consensus        78 ~~n~~~~~~~~   88 (98)
                      |.  +.=-|.+
T Consensus        87 Ds--g~Y~C~~   95 (137)
T 3bdb_A           87 DG--GEYFCGE   95 (137)
T ss_dssp             TC--EEEEEEE
T ss_pred             HC--EEEEEEE
Confidence            74  3344443

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=92.72  E-value=0.084  Score=34.44  Aligned_cols=48  Identities=10%  Similarity=-0.009  Sum_probs=33.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      .+..|.++.|.|.++..-   .....|.+++..+           ...++.|.|.+++.+|.
T Consensus       108 ~v~~g~~~~l~C~~~~~p---~~~v~W~~~~~~~-----------~~~~~~L~i~~v~~~d~  155 (184)
T 2ny1_B          108 HLLQGQSLTLTLESPPGS---SPSVQCRSPRGKN-----------IQGGKTLSVSQLELQDS  155 (184)
T ss_dssp             EEETTCCEEEEEECCTTC---CCEEEEECTTSCE-----------EEESSEEEESSCCGGGC
T ss_pred             eeecCCCEEEEEEcCCCC---CCEEEEEeCCCcc-----------ccCceEEEEecCCcCCC
Confidence            578999999999986642   3467899876332           23566777777776663

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=92.68  E-value=0.073  Score=37.42  Aligned_cols=68  Identities=12%  Similarity=0.122  Sum_probs=43.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eeeec------------CcCCCceEEEcc-----CccEEEEeEe
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYL------------NTDTGGKYVVLS-----SGDLYVQIRL   75 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I~p------------~~~~dgKY~vlp-----sGeL~Ir~v~   75 (98)
                      .|..|.++.|.|.+..+.... ....|++..     ..|..            .....+||.+..     ++.|.|.+++
T Consensus       162 ~v~~G~~v~L~C~~~~~~~~~-~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~  240 (268)
T 1x9q_A          162 LVQPGGAMKLSCVTSGFTFGH-YWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLR  240 (268)
T ss_dssp             EECTTCCEEEEEEEESSCGGG-CEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             EecCCCcEEEEEEecCccccc-cEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCC
Confidence            678999999999986443222 236798642     12211            112468998864     3579999999


Q ss_pred             eecCCcceeeeee
Q psy5692          76 SITGNLSVKKMKV   88 (98)
Q Consensus        76 ~~~~n~~~~~~~~   88 (98)
                      .+|.  ..-.|.+
T Consensus       241 ~~Ds--G~Y~C~a  251 (268)
T 1x9q_A          241 VEDT--GIYYCTG  251 (268)
T ss_dssp             GGGC--EEEEEEE
T ss_pred             HHHC--EEEEEEE
Confidence            8874  4445554

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=92.68  E-value=0.088  Score=35.62  Aligned_cols=32  Identities=19%  Similarity=0.326  Sum_probs=24.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIY   52 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~   52 (98)
                      .|..|.++.|.|.+...-.   ....|.+++..+.
T Consensus        29 ~v~~G~~v~L~C~~~~~p~---~~v~W~~~~~~~~   60 (218)
T 3k0w_A           29 AVLAGQFVKLCCRATGHPF---VQYQWFKMNKEIP   60 (218)
T ss_dssp             EEETTSBEEEECEETTTTS---SEEEEEETTEECT
T ss_pred             EEeCCCcEEEEeeecCCCC---CEEEEEECCEECC
Confidence            6789999999999865432   2578999986663

>1a2y_B IGG1-kappa D1.3 FV (heavy chain); complex (immunoglobulin/hydrolase), immunoglobulin V region, signal, hydrolase, glycosidase, bacteriolytic enzyme, egg white; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1a7r_H 1dvf_B 1g7h_B 1g7i_B 1g7j_B 1g7l_B 1g7m_B 1kir_B 1vfa_B 1vfb_B 1kiq_B 1a7o_H 1a7n_H 1a7p_H 1kip_B 1a7q_H 1dl7_H* 1bvk_B 1bvl_A 1p4i_H ...

Probab=92.65  E-value=0.082  Score=33.31  Aligned_cols=69  Identities=7%  Similarity=0.005  Sum_probs=41.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----e-eeecCc--------CCCceEEEcc-----CccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----V-NIYLNT--------DTGGKYVVLS-----SGDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~-~I~p~~--------~~dgKY~vlp-----sGeL~Ir~v~~~~   78 (98)
                      .|..|.+++|.|.+.+..... ....|.+..     . .++-..        ...+||.+..     +.-|.|++++.+|
T Consensus        11 ~~~~G~~vtL~C~~~~~~~~~-~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~D   89 (116)
T 1a2y_B           11 LVAPSQSLSITCTVSGFSLTG-YGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDD   89 (116)
T ss_dssp             EECTTSCEEEEEEEESSCTTS-SEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             EEeCCCcEEEEEEEcCCCcCC-cEEEEEEeCCCCCcEEEEEEecCCCeeeCcccCCcEEEEEECCCCEEEEEECCCCHHH
Confidence            455899999999985432222 347897653     1 222111        1247998863     2369999999876


Q ss_pred             CCcceeeeeeh
Q psy5692          79 GNLSVKKMKVE   89 (98)
Q Consensus        79 ~n~~~~~~~~~   89 (98)
                      .  +.=-|.+.
T Consensus        90 s--g~Y~C~~~   98 (116)
T 1a2y_B           90 T--ARYYCARE   98 (116)
T ss_dssp             C--EEEEEEEE
T ss_pred             C--EEEEEEEe
Confidence            4  44445443

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=92.59  E-value=0.094  Score=39.89  Aligned_cols=61  Identities=8%  Similarity=0.122  Sum_probs=40.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-e--cC-------cCCCceEEEccC-----ccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-Y--LN-------TDTGGKYVVLSS-----GDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~--p~-------~~~dgKY~vlps-----GeL~Ir~v~~~   77 (98)
                      .|..|.+|+|.|.+...-.. .....|++++     ..| +  ..       ....+||.+..+     +.|.|++++.+
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   90 (475)
T 1iga_A           12 VKKPGASVKVSCKASGYSFT-SYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRPE   90 (475)
T ss_pred             EEeCCCCEEEEEEecCCCCC-CceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEECCCChh
Confidence            56789999999998644211 2347898753     112 1  11       123689988753     47999999987


Q ss_pred             cC
Q psy5692          78 TG   79 (98)
Q Consensus        78 ~~   79 (98)
                      |.
T Consensus        91 D~   92 (475)
T 1iga_A           91 DT   92 (475)
T ss_pred             hC
Confidence            75

>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A

Probab=92.58  E-value=0.13  Score=32.60  Aligned_cols=60  Identities=8%  Similarity=0.275  Sum_probs=38.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC------eeeecCc-----CCCceEEEc--cCc---cEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIYLNT-----DTGGKYVVL--SSG---DLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd------~~I~p~~-----~~dgKY~vl--psG---eL~Ir~v~~~~~   79 (98)
                      .|..|.++.|.|.+......  ....|.+..      ..|+-..     ...|||.+.  +++   -|.|++++.+|.
T Consensus        10 ~v~~G~~vtL~C~~~~~~~~--~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Ds   85 (117)
T 3bp6_A           10 TVSEGANATFTCSLSNWSED--LMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDS   85 (117)
T ss_dssp             EECTTCCEEEEEEESSCCTT--CEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGGC
T ss_pred             EEeCCCCEEEEeEeecCCCC--CEEEEEEeCCCCCceEEEEECCCCccccccCcEEEEEcCCCCEEEEEECcCCHHHC
Confidence            35589999999997643222  346898752      2222111     236899884  444   599999987763

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=92.57  E-value=0.082  Score=35.80  Aligned_cols=58  Identities=16%  Similarity=0.200  Sum_probs=37.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----e-eeecC-------cCCCceEEEcc----CccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----V-NIYLN-------TDTGGKYVVLS----SGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~-~I~p~-------~~~dgKY~vlp----sGeL~Ir~v~~~~~   79 (98)
                      .|..|.+++|.|. .+.-   .....|.+++     . .++-.       ....+||.+..    ++.|.|++++.+|.
T Consensus        11 ~v~~G~~v~L~C~-~~~~---~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~Ds   85 (238)
T 2p1y_A           11 VAVTGGKVTLSCN-QTNN---HNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQT   85 (238)
T ss_dssp             EEETTCCEEEEEE-ECSC---CSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCGGGC
T ss_pred             EEeCCCEEEEEee-cCCC---CccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCcccC
Confidence            4568999999999 3322   2357798852     1 11111       12357888864    44799999998775

>1j05_H T84.66 antibody, anti-CEA MAB T84.66, heavy chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1dvf_D 1mvu_B 1ap2_B 2ap2_B

Probab=92.43  E-value=0.093  Score=33.30  Aligned_cols=69  Identities=14%  Similarity=0.122  Sum_probs=41.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----e-eeecCc---------CCCceEEEcc-----CccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----V-NIYLNT---------DTGGKYVVLS-----SGDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~-~I~p~~---------~~dgKY~vlp-----sGeL~Ir~v~~~   77 (98)
                      .|..|.++.|.|.+.+..... ....|.+..     . .++-..         ...+||.+..     +.-|.|++++.+
T Consensus        11 ~~~~G~~vtL~C~~~~~~~~~-~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~   89 (121)
T 1j05_H           11 LVEPGASVKLSCTASGFNIKD-TYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSE   89 (121)
T ss_dssp             EECTTCCEEEEEEEESSCGGG-SEEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             EEeCCCcEEEEEEecCcccCC-cEEEEEEECCCCCcEEEEEEecCCCceeeCcccCCcEEEEEcCCCCEEEEEECCCCHH
Confidence            345899999999986432121 246887642     1 122111         1247898862     236999999987


Q ss_pred             cCCcceeeeeeh
Q psy5692          78 TGNLSVKKMKVE   89 (98)
Q Consensus        78 ~~n~~~~~~~~~   89 (98)
                      |.  +.=-|.+.
T Consensus        90 Ds--g~Y~C~~~   99 (121)
T 1j05_H           90 DT--AVYYCAPF   99 (121)
T ss_dssp             GC--EEEEEEEE
T ss_pred             HC--EEEEEEEE
Confidence            74  44455543

>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor, immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1

Probab=92.38  E-value=0.21  Score=32.34  Aligned_cols=69  Identities=14%  Similarity=0.232  Sum_probs=43.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC------eeeecCc----CCCceEEEc--cC-c--cEEEEeEeeecCCcc
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIYLNT----DTGGKYVVL--SS-G--DLYVQIRLSITGNLS   82 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd------~~I~p~~----~~dgKY~vl--ps-G--eL~Ir~v~~~~~n~~   82 (98)
                      .+..|.+|+|.|...+.-.++ ....|.+..      ..|+...    ...|||.+.  ++ |  -|.|++++.+|.  +
T Consensus        21 ~~~~G~svtL~C~~s~~~~~~-~~v~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~l~~~Ds--g   97 (122)
T 1hkf_A           21 QSVAGQTLTVRCQYPPTGSLY-EKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDS--G   97 (122)
T ss_dssp             EECTTCCEEEEEECCCCTTCC-CEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGC--E
T ss_pred             EEecCCCEEEEeEccCCCCcc-cEEEEEcCCCCCCceEEEEeCCeEeEeecCcEEEEEcCcCCEEEEEEeCCCHHHC--E
Confidence            355899999999986532222 357898874      1233211    236899883  32 2  488999988773  4


Q ss_pred             eeeeeeh
Q psy5692          83 VKKMKVE   89 (98)
Q Consensus        83 ~~~~~~~   89 (98)
                      +=-|.+.
T Consensus        98 ~Y~C~v~  104 (122)
T 1hkf_A           98 HYWCRIY  104 (122)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            4555554

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=92.34  E-value=0.13  Score=34.44  Aligned_cols=56  Identities=14%  Similarity=0.145  Sum_probs=35.4

Q ss_pred             eeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEE--cc---CccEEEEeEe-eec
Q psy5692          14 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV--LS---SGDLYVQIRL-SIT   78 (98)
Q Consensus        14 ~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~v--lp---sGeL~Ir~v~-~~~   78 (98)
                      .+. .+..|.++.|.|.+...-.   ....|.+++..|.+     +++..  ..   ...|.|.+++ .+|
T Consensus        14 ~~~-~v~~G~~v~L~C~~~g~p~---~~v~W~k~~~~~~~-----~~~~~~~~~~~~~~~L~i~~v~~~~d   75 (212)
T 2yd6_A           14 VDQ-TGVSGGVASFICQATGDPR---PKIVWNKKGKKVSN-----QRFEVIEFDDGSGSVLRIQPLRTPRD   75 (212)
T ss_dssp             CCE-EEETTSCEEEEEEEEEESC---CEEEEEETTEECCC-----TTEEEEEEGGGTEEEEEECSCCTTTT
T ss_pred             cee-EEecCCeEEEEEEEeeCCC---CEEEEEECCcCCCC-----CceeEEEEcCCCceEEEEeccCCCCC
Confidence            344 6789999999999753222   25789999876643     23322  22   2348888774 444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=92.32  E-value=0.02  Score=41.96  Aligned_cols=60  Identities=23%  Similarity=0.199  Sum_probs=41.0

Q ss_pred             eeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCC
Q psy5692          14 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGN   80 (98)
Q Consensus        14 ~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n   80 (98)
                      .+. .|..|.++.|.|.+...-..   ...|.+++..+.+.   ..++...++|.|.|++++.+|.-
T Consensus       166 ~~~-~v~~G~~v~L~C~~~g~p~p---~i~W~~~~~~~~~~---~~~~~~~~~~~L~i~~v~~~D~G  225 (347)
T 2ifg_A          166 PNA-SVDVGDDVLLRCQVEGRGLE---QAGWILTELEQSAT---VMKSGGLPSLGLTLANVTSDLNR  225 (347)
T ss_dssp             CSS-CCBTTCCEEEEEEEECSSCC---CCCEEESCCCSSEE---ECCCCCSSEEEEEEESCCSTTTT
T ss_pred             Cce-EEeCCCcEEEEEEEecCCCC---EEEEEcCCceeecc---cccceecccceEEEeeCChHHCC
Confidence            444 78899999999998443332   34899998444331   23335567889999998887754

>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta barrel, immunoglobulin fold, IGV domain, TIM, glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB: 3bi9_X* 3bib_X*

Probab=92.31  E-value=0.37  Score=30.01  Aligned_cols=67  Identities=18%  Similarity=0.186  Sum_probs=40.5

Q ss_pred             ceeecCeEEEEccCCC-CccceeEEeEEccCC--------eeeecCc-----CCCceEEEcc-----CccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPS-YMSEYIIVTSWIQDD--------VNIYLNT-----DTGGKYVVLS-----SGDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs-~V~d~V~V~SW~~Dd--------~~I~p~~-----~~dgKY~vlp-----sGeL~Ir~v~~~~   78 (98)
                      .+..|.+++|.|...+ ....  ....|.+..        ..++...     ...+||.+..     +-.|.|++++.+|
T Consensus         7 ~~~~G~~vtL~C~~~~~~~~~--~~v~W~r~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D   84 (116)
T 3bia_X            7 IGFLGQPVTLPCHYLSWSQSR--NSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQFGEVSLTISNTNRGD   84 (116)
T ss_dssp             EEETTSCEEECCBCTTCCTTT--CEEEEEESSCCSSSCTTEEEEECSSSEEEESSTTEEECSCGGGTBCCEEECSCCGGG
T ss_pred             EEeeCCcEEEEEEeeCCCCCe--EEEEEeeecCCCCCCceEEEEECCcccccccCceEEEeccCCCCEEEEEEccCChhH
Confidence            4568999999999862 2222  246887754        2233321     1356887642     2369999999876


Q ss_pred             CCcceeeeee
Q psy5692          79 GNLSVKKMKV   88 (98)
Q Consensus        79 ~n~~~~~~~~   88 (98)
                      .  +.=-|.+
T Consensus        85 s--g~Y~C~v   92 (116)
T 3bia_X           85 S--GVYCCRI   92 (116)
T ss_dssp             C--EEEEEEE
T ss_pred             C--EEEEEEE
Confidence            3  3444444

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=92.29  E-value=0.13  Score=35.18  Aligned_cols=50  Identities=12%  Similarity=0.117  Sum_probs=32.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~   78 (98)
                      .+..|.++.|.|.+.+.-.  .....|.+|+..+.+.         ..++.|.|.+++.+|
T Consensus        99 ~v~~G~~v~L~C~~~~~~p--~~~v~W~k~g~~~~~~---------~~~~~L~i~~v~~~D  148 (204)
T 3sgj_C           99 VFKEEDPIHLRCHSWKNTA--LHKVTYLQNGKGRKYF---------HHNSDFYIPKATLKD  148 (204)
T ss_dssp             EEETTCCEEEEEEEGGGCC--CEEEEEEETTEEEEEE---------EECCCEEESSCCGGG
T ss_pred             eEeCCCcEEEEEEecCCCC--CceEEEEECCcEeecc---------cCCceEEECcCCccc
Confidence            5678999999999742211  2457899998655321         125567776666555

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=92.27  E-value=0.019  Score=40.96  Aligned_cols=57  Identities=11%  Similarity=0.070  Sum_probs=32.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEE-EccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYV-VLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~-vlpsGeL~Ir~v~~~~~   79 (98)
                      .|..|.+++|.|..+....    ...|.+++..+.+.. ...+.. ...++.|.|++++.+|.
T Consensus       129 ~v~~G~~v~L~C~~~~~~~----~~~w~k~g~~~~~~~-~~~~~~~~~~~~~L~i~~v~~~D~  186 (316)
T 3vh8_G          129 LVKSGERVILQCWSDIMFE----HFFLHKEGISKDPSR-LVGQIHDGVSKANFSIGPMMLALA  186 (316)
T ss_dssp             EEETTCCEEEEEEESSCCS----EEEEEETTCCSCCEE-EECEEETTEEEEEEEECSCCGGGC
T ss_pred             ccCCCCeEEEEEcCCCCCc----EEEEEECCCccccce-eeeeecCCCceEEEEECCCChhhC
Confidence            4778999999999853322    346888875443210 001111 12456777777766553

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=92.22  E-value=0.093  Score=38.06  Aligned_cols=50  Identities=14%  Similarity=0.051  Sum_probs=32.7

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEc----cCccEEEEeEe
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL----SSGDLYVQIRL   75 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vl----psGeL~Ir~v~   75 (98)
                      .|..|.+++|.|.....   .. ...|.+|+..+.+.    .++...    .++.|.|.+|+
T Consensus       117 ~V~~G~~vtL~C~~~~~---~~-~~~w~k~g~~~~~~----~~~~~~~~~~~~~~l~I~~v~  170 (257)
T 1b6u_A          117 TVLAGESVTLSCSSRSS---YD-MYHLSREGEAHERR----FSAGPKVNGTFQADFPLGPAT  170 (257)
T ss_dssp             TCBTTCEEEEEEECSSC---CS-EEEEEETTSSCEEC----CBCBCCSSSCCBEEEEEEECC
T ss_pred             ccCCCCEEEEEEeCCCC---Cc-EEEEEECCcccCcc----cccccccCCceeEEEEecccc
Confidence            57899999999997543   22 45799998555431    112222    25678888876

>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC, H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A {Mus musculus} SCOP: b.1.1.1

Probab=92.18  E-value=0.14  Score=34.24  Aligned_cols=67  Identities=19%  Similarity=0.225  Sum_probs=41.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC------eeeecC--c---CCCceEEEc--c---CccEEEEeEeeecCCc
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIYLN--T---DTGGKYVVL--S---SGDLYVQIRLSITGNL   81 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd------~~I~p~--~---~~dgKY~vl--p---sGeL~Ir~v~~~~~n~   81 (98)
                      .|..|.++.|.|.+.....++  ...|.+..      ..++-.  .   ...+||.+.  +   +.-|.|++++.+|.  
T Consensus        11 ~v~~G~~vtL~C~~s~~~~~~--~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~Ds--   86 (142)
T 2ol3_A           11 SVMEKTTVTMDCVYETQDSSY--FLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDS--   86 (142)
T ss_dssp             EEETTCCEEECCBCCCCCSSC--EEEEEEECTTCCEEEEEEEETTCSSCCEETTEEECCBGGGTBCCEEECSCCTTTC--
T ss_pred             EEecCCCEEEEEEecCCcCCc--eEEEEEeCCCCCcEEEEEECCCCcccccCCCEEEEecCCCCEEEEEECCCChhhC--
Confidence            345899999999986543232  47898742      222221  1   125799984  3   33699999997763  


Q ss_pred             ceeeeee
Q psy5692          82 SVKKMKV   88 (98)
Q Consensus        82 ~~~~~~~   88 (98)
                      ++=-|.+
T Consensus        87 g~Y~C~~   93 (142)
T 2ol3_A           87 AVYFCAM   93 (142)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            4444444

>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D 3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A

Probab=92.17  E-value=0.11  Score=36.49  Aligned_cols=67  Identities=9%  Similarity=-0.004  Sum_probs=43.9

Q ss_pred             ceeecCeEEEEccCCC-CccceeEEeEEccCC------eeeecC--cCCCceEEEc--cC---ccEEEEeEeeecCCcce
Q psy5692          18 NVILGNTAVLRCQIPS-YMSEYIIVTSWIQDD------VNIYLN--TDTGGKYVVL--SS---GDLYVQIRLSITGNLSV   83 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs-~V~d~V~V~SW~~Dd------~~I~p~--~~~dgKY~vl--ps---GeL~Ir~v~~~~~n~~~   83 (98)
                      .|..|.+|.|.|.+.. ...+   ...|++..      ..+|-.  ....|||.+.  ++   ..|.|++++.+|.  ++
T Consensus        10 ~v~~G~~v~L~C~~s~~~~~~---~v~Wyrq~~g~~~~~l~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~Ds--g~   84 (206)
T 1kgc_D           10 ESNEEEPVHLPCNHSTISGTD---YIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDA--AV   84 (206)
T ss_dssp             EEETTSCEEEEEEESCCCTTC---CEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGC--EE
T ss_pred             EEcCCCCEEEEEEEcCCCCCc---cEEEEEECCCCCcEEEEEECCCCccCCCEEEEEcCCCCEEEEEECCCCcccC--cc
Confidence            3568999999999865 2233   47898753      123322  1236899886  22   3699999998876  66


Q ss_pred             eeeeeh
Q psy5692          84 KKMKVE   89 (98)
Q Consensus        84 ~~~~~~   89 (98)
                      =.|.+.
T Consensus        85 Y~C~~~   90 (206)
T 1kgc_D           85 YYCILP   90 (206)
T ss_dssp             EEEECC
T ss_pred             EEEEEe
Confidence            666654

>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}

Probab=92.16  E-value=0.41  Score=30.99  Aligned_cols=60  Identities=13%  Similarity=0.150  Sum_probs=37.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----e-eeecCc-----CCCceEEEc--cC---ccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----V-NIYLNT-----DTGGKYVVL--SS---GDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~-~I~p~~-----~~dgKY~vl--ps---GeL~Ir~v~~~~~   79 (98)
                      .|..|.++.|.|.+.....  -....|.+..     . .++-..     ...+||.+.  ++   ..|.|++++.+|.
T Consensus        12 ~v~~G~~vtL~C~~s~~~~--~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~Ds   87 (129)
T 3rrq_A           12 VVTEGDNATFTCSFSNTSE--SFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFHMSVVRARRNDS   87 (129)
T ss_dssp             EEETTSCEEEEEECCCCC---CEEEEEEEEESTTSCEEEEEETC--------CCEEEEECTTSSEEEEEESSCCGGGC
T ss_pred             EEeCCCCEEEEeEecCCCC--CcEEEEeEeCCCCCccEEEEEcCCccCCCcCCcEEEEEcCCCCEEEEEECCCChhHC
Confidence            4558999999999875532  2346898632     1 222111     125799886  43   4699999998874

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=92.12  E-value=0.045  Score=38.13  Aligned_cols=55  Identities=16%  Similarity=0.193  Sum_probs=36.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEc---cCccEEEEe-EeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL---SSGDLYVQI-RLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vl---psGeL~Ir~-v~~~~~   79 (98)
                      .+..|.++.|.|.+...-.   ...+|.+++..+.+    +++|.+.   ..+.|.|.+ ++..|.
T Consensus       115 ~~~~g~~~~l~C~~~g~p~---p~i~W~~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~~d~  173 (305)
T 2nzi_A          115 HALRGEVVSIKIPFSGKPD---PVITWQKGQDLIDN----NGHYQVIVTRSFTSLVFPNGVERKDA  173 (305)
T ss_dssp             EEETTCCEEEEEEEEEESC---CEEEEEESSSBCCS----SSSCEEEECSSEEEEEETTCCCSTTC
T ss_pred             EecCCCEEEEEEEECCCCC---CEEEEEECCEECCC----CCcEEEEEcCCceEEEEecCCccCcc
Confidence            4567999999999743322   25689998865533    4566665   345677777 666554

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=92.11  E-value=0.14  Score=39.07  Aligned_cols=59  Identities=19%  Similarity=0.317  Sum_probs=37.0

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecC-------cCCCceEEEccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-------TDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~-------~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      .+..|.++.|.|.+..+-.. ....+|.+|+..|.++       .+.+|.|.+  +..|.|.+++.+|+
T Consensus       125 ~~~~g~~v~l~C~~~g~~p~-~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~d~  190 (523)
T 2rcj_C          125 EELQANKATLVCLISDFYPG-AVTVAWKADGSPVKAGVETTKPSKQSNNKYAA--SSYLSLTPEQWKSH  190 (523)
T ss_pred             cccCCCceEEEEEeccccCC-ceEEEEecCCCCCCCceEeccccccCCCCEEE--EEEEEEechhcCCC
Confidence            35679999999998743322 1367899998655331       123455543  23577887776554

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=92.08  E-value=0.038  Score=36.74  Aligned_cols=66  Identities=20%  Similarity=0.280  Sum_probs=39.8

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCCeeeecCc------CCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT------DTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~------~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      +..|.++.|.|.+..+-..- ...+|.+|+..|.+..      ..+|.|.+  ++.|.|.+++.+|+  ..-.|.++
T Consensus       126 ~~~g~~v~l~C~~~g~~p~~-~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~d~--G~Y~C~a~  197 (213)
T 3mj8_L          126 ELKTNQATLVCMINGFYPAD-VAVTWEADGTPITQGVKTTQPSKSDSKYMA--TSYLTMTADAWKSR--NTFICKVT  197 (213)
T ss_dssp             HHTTTEEEEEEEEEEEBSSC-CEEEEEETTEEECTTEEECCCEEETTEEEE--EEEEEEESHHHHSC--SCEEEEEE
T ss_pred             cccCCcEEEEEEeeceeCCC-eEEEEEcCCcccCCCcccCCcCccCCcEEE--EEEEEEeHHHcCCC--CEEEEEEE
Confidence            34699999999976332221 2578999987664321      13567765  35577777665543  23444443

>2p45_B Antibody CAB-RN05; seMet phasing, camelid single-domain antibody, VHH, RNAse A, yeast surface display, hydrolase/immune system complex; 1.10A {Camelus dromedarius} PDB: 2p46_B 2p47_B 2p48_B 2p44_B 2p49_B 2p42_B 2p43_B 1bzq_K 3qsk_B 2p4a_B 1op9_A 1sjx_A 3qxt_A* 3qxu_A 3eba_A

Probab=92.03  E-value=0.14  Score=32.48  Aligned_cols=69  Identities=13%  Similarity=0.166  Sum_probs=42.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC------eeeecCc---------CCCceEEEccC-----ccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIYLNT---------DTGGKYVVLSS-----GDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd------~~I~p~~---------~~dgKY~vlps-----GeL~Ir~v~~~   77 (98)
                      .|..|.+|.|.|.+.+.... -....|.+..      ..++-..         ...+||.+..+     .-|.|++++.+
T Consensus        13 ~~~~G~~vtL~C~~~~~~~~-~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~   91 (123)
T 2p45_B           13 LVQAGGSLRLSCAASGYAYT-YIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRMTISRDKGKNTVYLQMDSLKPE   91 (123)
T ss_dssp             EEETTCCEEEEEEEESCSSC-CSEEEEEEECTTSCCEEEEEEETTSCSCEECTTTBTTEEEECCTTSSEEEEEESSCCGG
T ss_pred             EEeCCCCEEEEEEecCccCc-CcEEEEEEECCCCCcEEEEEEecCCCceEeCcccCCeEEEEEeCCCCEEEEEECCCCHH
Confidence            45589999999998543212 1346898753      1233211         13579988632     36999999987


Q ss_pred             cCCcceeeeeeh
Q psy5692          78 TGNLSVKKMKVE   89 (98)
Q Consensus        78 ~~n~~~~~~~~~   89 (98)
                      |.  +.=-|.+.
T Consensus        92 Ds--g~Y~C~~~  101 (123)
T 2p45_B           92 DT--ATYYCAAG  101 (123)
T ss_dssp             GC--EEEEEEES
T ss_pred             HC--EEEEEEEE
Confidence            74  44455543

>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo sapiens} PDB: 2nx5_D 4dzb_A

Probab=92.02  E-value=0.18  Score=35.34  Aligned_cols=67  Identities=15%  Similarity=0.156  Sum_probs=42.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC------eeeecCcC---CCceEEEc--cC---ccEEEEeEeeecCCcce
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIYLNTD---TGGKYVVL--SS---GDLYVQIRLSITGNLSV   83 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd------~~I~p~~~---~dgKY~vl--ps---GeL~Ir~v~~~~~n~~~   83 (98)
                      .|..|.+|.|.|.+......   ...|.+..      ..+|-...   ..|||.+.  ++   ..|.|++++.+|.  ++
T Consensus        10 ~v~~G~~vtL~C~~s~~~~~---~v~Wyrq~~g~~~~~l~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Ds--g~   84 (200)
T 2nw2_A           10 TATEGAIVQINCTYQTSGFN---GLFWYQQHAGEAPTFLSYNVLDGLEEKGRFSSFLSRSKGYSYLLLKELQMKDS--AS   84 (200)
T ss_dssp             EEETTCCEEEEEECCCSSCC---CEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGC--EE
T ss_pred             EEccCCCEEEEEEECCCCCc---eEEEEEeCCCCCcEEEEEEcCCCcccCCceEEEecCCCCEEEEEECccCcccC--Cc
Confidence            35589999999998655432   46898743      22332211   16899885  32   3699999988764  45


Q ss_pred             eeeeeh
Q psy5692          84 KKMKVE   89 (98)
Q Consensus        84 ~~~~~~   89 (98)
                      =-|.+.
T Consensus        85 Y~C~~~   90 (200)
T 2nw2_A           85 YLCAVQ   90 (200)
T ss_dssp             EEEEEC
T ss_pred             EEEEEE
Confidence            555543

>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system; 2.35A {Mus musculus} PDB: 2e7l_C

Probab=92.01  E-value=0.27  Score=31.63  Aligned_cols=58  Identities=19%  Similarity=0.223  Sum_probs=36.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eeee-cCc-------CCCceEEEc-cC---ccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIY-LNT-------DTGGKYVVL-SS---GDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I~-p~~-------~~dgKY~vl-ps---GeL~Ir~v~~~~~   79 (98)
                      .|..|.+++|.|.. +.  . -....|.+..     ..|+ -..       ...+||.+. ++   .-|.|++++.+|.
T Consensus        12 ~v~~G~~vtL~C~~-~~--~-~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   86 (121)
T 2oi9_C           12 VAVTGEKVTLSCNQ-TN--N-HNNMYWYRQDTGHELRLIYYSYGAGSTEKGDIPDGYKASRPSQENFSLTLESATPSQT   86 (121)
T ss_dssp             EEETTCCEEEEEEE-SS--C-CSEEEEEEESSSSCCEEEEEESSTTCCEECSSCTTEEEECCSSSEEEEEESSCCGGGC
T ss_pred             EecCCCcEEEEEEe-cC--C-CCeEEEEEECCCCCcEEEEEECCCceeeCCccCCCeEEEcCCCCEEEEEECCCCHHHC
Confidence            34589999999994 32  1 1347898743     2232 111       125788875 32   3599999998774

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=91.98  E-value=0.056  Score=38.80  Aligned_cols=56  Identities=21%  Similarity=0.319  Sum_probs=33.5

Q ss_pred             eecCeEEEEccCCCCccceeEEeEEccCCeeeecC--------cCCCceEEEccCccEEEEeEeeec
Q psy5692          20 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN--------TDTGGKYVVLSSGDLYVQIRLSIT   78 (98)
Q Consensus        20 irGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~--------~~~dgKY~vlpsGeL~Ir~v~~~~   78 (98)
                      +.|.++.|.|.+..+-..-+ ..+|.+|+..|-+.        .+.+|.|.+  ++.|.|..++.+|
T Consensus       232 ~~g~~~~l~C~~~g~~p~~~-~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~--~s~L~i~~~~~~d  295 (323)
T 2wqr_A          232 GSRDKRTLACLIQNFMPEDI-SVQWLHNEVQLPDARHSTTQPRKTKGSGFFV--FSRLEVTRAEWEQ  295 (323)
T ss_dssp             TCTTEEEEEEEEEEEBSSCC-EEEEEETTEECCGGGEEECCCEECSSSSEEE--EEEEEEEHHHHHH
T ss_pred             hcCCcEEEEEEeeeeeCCCc-EEEEEECCEECCCCceeecCcccCCCCcEEE--EEEEEEChHHccC
Confidence            45999999999753221112 46799998766331        123455554  3457776665544

>2xt1_B Camelid VHH 9; viral protein-immune system complex; 1.32A {Vicugna pacos} PDB: 2xv6_B 2xxc_B 2xxm_B

Probab=91.96  E-value=0.12  Score=33.23  Aligned_cols=68  Identities=15%  Similarity=0.133  Sum_probs=41.7

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-ecCc---------CCCceEEEcc-----CccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLNT---------DTGGKYVVLS-----SGDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~p~~---------~~dgKY~vlp-----sGeL~Ir~v~~~   77 (98)
                      .|..|.+|.|.|.+.++-.. -....|.+..     ..| +-..         ...|||.+..     +.-|.|++++.+
T Consensus        13 ~v~~G~~vtL~C~~s~~~~~-~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   91 (121)
T 2xt1_B           13 LVQAGGSLRLSCAASGSFFM-SNVMAWYRQAPGKARELIAAIRGGDMSTVYDDSVKGRFTITRDDDKNILYLQMNDLKPE   91 (121)
T ss_dssp             EEETTCCEEEEEEEESSSCC-CSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EEeCCCCEEEEEEecCeecc-CceEEEEEECCCCCcEEEEEEecCCCcceeCcccCCeEEEEEeCCCCEEEEEECCCCHH
Confidence            45589999999998543211 2347898742     222 2111         1357998863     346999999987


Q ss_pred             cCCcceeeeee
Q psy5692          78 TGNLSVKKMKV   88 (98)
Q Consensus        78 ~~n~~~~~~~~   88 (98)
                      |.  +.=-|.+
T Consensus        92 Ds--G~Y~C~~  100 (121)
T 2xt1_B           92 DT--AMYYCKA  100 (121)
T ss_dssp             GC--EEEEEEE
T ss_pred             HC--EEEEEEE
Confidence            74  4444544

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=91.94  E-value=0.14  Score=35.99  Aligned_cols=56  Identities=13%  Similarity=0.177  Sum_probs=32.7

Q ss_pred             eeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEc--cCc---cEEEEeEee-ec
Q psy5692          14 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL--SSG---DLYVQIRLS-IT   78 (98)
Q Consensus        14 ~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vl--psG---eL~Ir~v~~-~~   78 (98)
                      .+. .|..|.++.|.|.+...-.   ....|.+++..|.     ++++.+.  ++|   .|.|.+++. .|
T Consensus        14 ~~~-~v~~G~~v~l~C~~~g~p~---~~i~W~k~g~~i~-----~~~~~~~~~~~~~~~~L~i~~~~~~~D   75 (304)
T 2yd9_A           14 KDQ-IGVSGGVASFVCQATGDPK---PRVTWNKKGKKVN-----SQRFETIEFDESAGAVLRIQPLRTPRD   75 (304)
T ss_dssp             CCE-EEETTSCEEEEEEEECSSC---CEEEEC------------CTTEEEEEETTTTEEEEEECSCCTTTT
T ss_pred             Cce-EecCCCeEEEEEEEEEeCC---CeEEEEECCEECC-----CCceEEEEecCCCceEEEEecccccCC
Confidence            344 6789999999999753322   2468999986652     3455553  454   488888875 55

>1n4x_H Immunoglobulin heavy chain variable region; immune system; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy4_B

Probab=91.92  E-value=0.1  Score=32.95  Aligned_cols=68  Identities=13%  Similarity=0.160  Sum_probs=40.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----e-eeecC---------cCCCceEEEcc---C--ccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----V-NIYLN---------TDTGGKYVVLS---S--GDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~-~I~p~---------~~~dgKY~vlp---s--GeL~Ir~v~~~   77 (98)
                      .|..|.++.|.|.+.+.-... ....|.+..     . .++-.         ....+||.+..   .  .-|.|++++.+
T Consensus        11 ~~~~G~~vtL~C~~~~~~~~~-~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~   89 (120)
T 1n4x_H           11 LKKPGETVKISCKATNYAFTD-YSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNE   89 (120)
T ss_dssp             EECTTCCEEEEEEEESSCGGG-SCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             EEcCCCeEEEEEEecCcccCC-cEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCCHH
Confidence            345899999999975432111 246887653     1 22211         12357998862   2  36999999987


Q ss_pred             cCCcceeeeee
Q psy5692          78 TGNLSVKKMKV   88 (98)
Q Consensus        78 ~~n~~~~~~~~   88 (98)
                      |.  +.=-|.+
T Consensus        90 Ds--G~Y~C~~   98 (120)
T 1n4x_H           90 DT--ATYFCVR   98 (120)
T ss_dssp             GC--EEEEEEE
T ss_pred             HC--EEEEEEE
Confidence            64  4444444

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=91.89  E-value=0.1  Score=36.07  Aligned_cols=69  Identities=12%  Similarity=-0.061  Sum_probs=42.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC--e---e-eecCc--------CCCceEEEcc-----CccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---N-IYLNT--------DTGGKYVVLS-----SGDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd--~---~-I~p~~--------~~dgKY~vlp-----sGeL~Ir~v~~~~   78 (98)
                      .|..|.++.|.|.+...-.. -....|.+++  .   . ++...        ..++||.+..     ++.|.|++++.+|
T Consensus       133 ~v~~G~~v~L~C~~~g~~~~-~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D  211 (242)
T 2znx_A          133 LVKPSQTLSLTCSVTGDSIT-SDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTED  211 (242)
T ss_dssp             EECTTSCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eecCCCeEEEEEEEEccccC-CcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCc
Confidence            57799999999998643210 1235798742  1   1 22111        1367898864     2479999999887


Q ss_pred             CCcceeeeeeh
Q psy5692          79 GNLSVKKMKVE   89 (98)
Q Consensus        79 ~n~~~~~~~~~   89 (98)
                      .  ..-.|.+.
T Consensus       212 ~--G~Y~C~a~  220 (242)
T 2znx_A          212 T--ATYYCANX  220 (242)
T ss_dssp             C--EEEEEEET
T ss_pred             C--EEEEEecc
Confidence            4  34445543

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=91.85  E-value=0.091  Score=35.91  Aligned_cols=29  Identities=14%  Similarity=0.248  Sum_probs=19.1

Q ss_pred             ceeecCeEEEEccCC---CCccceeEEeEEccC
Q psy5692          18 NVILGNTAVLRCQIP---SYMSEYIIVTSWIQD   47 (98)
Q Consensus        18 ~VirGNtAVLkC~IP---s~V~d~V~V~SW~~D   47 (98)
                      .|..|.+++|.|.+.   +.-.. .....|.++
T Consensus        14 ~v~~G~~v~L~C~~~g~p~~~~~-~~~v~W~k~   45 (248)
T 3pv7_A           14 ITPLNDNVTIFCNIFYSQPLNIT-SMGITWFWK   45 (248)
T ss_dssp             EEETTSCEEECCEEEESSCCCTT-SCEEEEEEE
T ss_pred             EEeCCCCEEEeeEEecCCCcCCC-ceEEEEEEE
Confidence            567899999999982   21111 224678876

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=91.71  E-value=0.077  Score=38.30  Aligned_cols=68  Identities=13%  Similarity=0.184  Sum_probs=42.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-ecC---------cCCCceEEEcc-----CccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN---------TDTGGKYVVLS-----SGDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~p~---------~~~dgKY~vlp-----sGeL~Ir~v~~~   77 (98)
                      .|..|.+|+|.|.+..+-.. ....+|++.+     ..| +-.         ....+||.+..     ++.|.|++++.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   89 (257)
T 3bn9_D           11 LVKPGGSLRLSCAASGFTFS-SYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLRAE   89 (257)
T ss_dssp             EECTTCEEEEEEEEESSCGG-GCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCCGG
T ss_pred             EEcCCCcEEEEEEeccccCC-CceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCChh
Confidence            45689999999997644211 2347898753     111 111         11358998874     347999999988


Q ss_pred             cCCcceeeeee
Q psy5692          78 TGNLSVKKMKV   88 (98)
Q Consensus        78 ~~n~~~~~~~~   88 (98)
                      |.  ..--|.+
T Consensus        90 Ds--G~Y~C~~   98 (257)
T 3bn9_D           90 DT--AVYYCAR   98 (257)
T ss_dssp             GC--EEEEEEE
T ss_pred             hC--EEEEEEE
Confidence            75  3444444

>2yc1_A Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_A 1dql_H 3cfi_C

Probab=91.71  E-value=0.083  Score=33.14  Aligned_cols=69  Identities=12%  Similarity=0.135  Sum_probs=41.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----e-eeecCc---------CCCceEEEcc-----CccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----V-NIYLNT---------DTGGKYVVLS-----SGDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~-~I~p~~---------~~dgKY~vlp-----sGeL~Ir~v~~~   77 (98)
                      .|..|.++.|.|.+.+.... -....|.+..     . .++-..         ...+||.+..     +.-|.|++++.+
T Consensus        11 ~~~~G~~vtL~C~~~~~~~~-~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~   89 (117)
T 2yc1_A           11 LVQPGGSLRLSCTGSGFTFD-NYAMHWLRQVPGEGLEWVSGISRSSGDIDYADSVKGRFTISRDDAKKTLSLQMNSLRAE   89 (117)
T ss_dssp             EECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECGGGCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EEcCCCeEEEEEEecCcccC-CCeEEEEEECCCCCcEEEEEEccCCCceeeCcccCCeEEEEEeCCCCEEEEEECCCCHH
Confidence            45589999999998543211 1236887742     1 222111         1257998863     236999999987


Q ss_pred             cCCcceeeeeeh
Q psy5692          78 TGNLSVKKMKVE   89 (98)
Q Consensus        78 ~~n~~~~~~~~~   89 (98)
                      |.  +.=-|.+.
T Consensus        90 Ds--g~Y~C~~~   99 (117)
T 2yc1_A           90 DT--AVYYCARG   99 (117)
T ss_dssp             GC--EEEEEEEE
T ss_pred             HC--EEEEEEEE
Confidence            74  44455543

>1bii_B Beta-2 microglobulin, MHC class I H-2DD; complex (MHC I/peptide), major histocompatibility complex class I DD, transmembrane, glycoprotein; 2.40A {Mus musculus} SCOP: b.1.1.2

Probab=91.71  E-value=0.44  Score=31.62  Aligned_cols=33  Identities=15%  Similarity=0.347  Sum_probs=24.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI   51 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I   51 (98)
                      .+..|..+.|.|.+..|=-.-+.| +|.+|+..+
T Consensus        34 ~~~~~~~~tL~C~a~gFyP~~I~v-~W~knG~~i   66 (119)
T 1bii_B           34 PPENGKPNILNCYVTQFHPPHIEI-QMLKNGKKI   66 (119)
T ss_dssp             CCCSSSCEEEEEEEEEEBSSCCEE-EEEETTEEC
T ss_pred             cccCCCCEEEEEEEEeecCCCeEE-EEEECCEEC
Confidence            344677899999987654455666 999998665

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=91.69  E-value=0.017  Score=42.10  Aligned_cols=56  Identities=11%  Similarity=-0.066  Sum_probs=31.7

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceE-EEccCccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKY-VVLSSGDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY-~vlpsGeL~Ir~v~~~~   78 (98)
                      .|..|.+++|+|..+.-   . ....|.+|+..+.+... .+++ ....++.|.|.+++..|
T Consensus        17 ~V~~G~~VtL~C~~~~~---~-~~~~W~k~g~~~~~~~~-~~~~~~~~~~~~L~I~~v~~~D   73 (257)
T 1b6u_A           17 LVKSEETVILQCWSDVR---F-QHFLLHREGKFKDTLHL-IGEHHDGVSKANFSIGPMMQDL   73 (257)
T ss_dssp             EEESSCCEEEEEEESSC---C-SEEEEEEESTTCEEEEE-ECBCCTTCEEEEEEECSCCTTT
T ss_pred             EecCCCCEEEEEecCCC---C-cEEEEEECCCCCCccee-eeeccCCCceEEEEeecCCccc
Confidence            56799999999997532   2 24679998744332100 0111 01235666666665544

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.65  E-value=0.034  Score=37.38  Aligned_cols=61  Identities=11%  Similarity=0.151  Sum_probs=36.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-eeeecCcCCCceEEEc---------cCccEEEEeEeeecCC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYVVL---------SSGDLYVQIRLSITGN   80 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-~~I~p~~~~dgKY~vl---------psGeL~Ir~v~~~~~n   80 (98)
                      .|..|.+|+|.|.+...--.-.-...|+++. ..+-.  ..+.++.+.         .++.|.|++|...|.-
T Consensus        23 ~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   93 (118)
T 2edn_A           23 SVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGS--KSGARFSFKESHNSASNVYTVELHIGKVVLGDRG   93 (118)
T ss_dssp             EEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCC--STTSSCEEEEEECSSSCEEEEEEEESSCCTTTCS
T ss_pred             EEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCC--CCccEEEeccccccccccceEEEEEeeCChhhCE
Confidence            5678999999998731100002256799875 32211  113444432         2588999999888753

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=91.57  E-value=0.12  Score=34.95  Aligned_cols=53  Identities=13%  Similarity=0.128  Sum_probs=31.5

Q ss_pred             eecCeEEEEccCCCCccc-eeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeE
Q psy5692          20 ILGNTAVLRCQIPSYMSE-YIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIR   74 (98)
Q Consensus        20 irGNtAVLkC~IPs~V~d-~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v   74 (98)
                      ..|.+|.|.|.+..+-.. --...+|.+++..+....  .+....+++|.|.|...
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~--~~~~~~~~~g~~~~~~~   69 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAK--TKPREEQYNSTYRVVSV   69 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCE--ECCCEECTTSCEEEEEE
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcc--cCCceeccCCcEEEEEE
Confidence            589999999998643211 013689999996653311  12333445565555543

>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*

Probab=91.56  E-value=0.12  Score=36.65  Aligned_cols=66  Identities=15%  Similarity=0.222  Sum_probs=42.0

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC------eeee-cC---cCCCceEEEc--c---CccEEEEeEeeecCCcc
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIY-LN---TDTGGKYVVL--S---SGDLYVQIRLSITGNLS   82 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd------~~I~-p~---~~~dgKY~vl--p---sGeL~Ir~v~~~~~n~~   82 (98)
                      .|..|.+|.|.|.+......   ...|++..      ..++ -.   ....|||.+.  +   +..|.|++++.+|.  +
T Consensus        14 ~v~~G~svtL~C~~s~~~~~---~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~Ds--g   88 (210)
T 2eys_A           14 IILEGKNCTLQCNYTVSPFS---NLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDS--A   88 (210)
T ss_dssp             EEETTCCEEEEEEECCSSCC---EEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGC--E
T ss_pred             EEecCCCEEEEEEECCCCCC---eEEEEEeCCCCCCEEEEEEecCCCCccCCCEEEEEcCCCCEEEEEEccCCcccC--c
Confidence            45589999999998655433   47898753      2233 11   1126899886  2   24799999998774  3


Q ss_pred             eeeeee
Q psy5692          83 VKKMKV   88 (98)
Q Consensus        83 ~~~~~~   88 (98)
                      +=-|.+
T Consensus        89 ~Y~C~~   94 (210)
T 2eys_A           89 SYICVV   94 (210)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            444443

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=91.54  E-value=0.27  Score=33.95  Aligned_cols=34  Identities=6%  Similarity=0.124  Sum_probs=24.7

Q ss_pred             ceeecCeEEEEccCCC-CccceeEEeEEccCCeeee
Q psy5692          18 NVILGNTAVLRCQIPS-YMSEYIIVTSWIQDDVNIY   52 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs-~V~d~V~V~SW~~Dd~~I~   52 (98)
                      .|..|.++.|.|.+.. +-+.- ...+|.+++..+.
T Consensus        14 ~v~~G~~v~l~C~~~g~~p~p~-~~v~W~k~~~~l~   48 (265)
T 2oz4_A           14 VLEVDTQGTVVCSLDGLFPVSE-AQVHLALGDQRLN   48 (265)
T ss_dssp             EEETTEEEEEEEEEESCSCGGG-CEEEEEETTEECC
T ss_pred             eEecCCCEEEEEEccCCCCCcc-eEEEEEeCCEECC
Confidence            6778999999999764 33221 2578999996663

>1kxv_C Camelid VHH domain CAB10; beta 8 alpha 8, beta barrel, hydrolase, immune system; 1.60A {Camelus dromedarius} SCOP: b.1.1.1

Probab=91.52  E-value=0.17  Score=32.15  Aligned_cols=69  Identities=13%  Similarity=0.159  Sum_probs=42.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-ecCc--------CCCceEEEcc--C---ccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLNT--------DTGGKYVVLS--S---GDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~p~~--------~~dgKY~vlp--s---GeL~Ir~v~~~~   78 (98)
                      .|..|.+|.|.|.+.+.... -....|.+..     ..| +-..        ...+||.+..  +   .-|.|++++.+|
T Consensus        11 ~~~~G~~vtL~C~~~~~~~~-~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~D   89 (121)
T 1kxv_C           11 TVPAGGSLRLSCAASGNTLC-TYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDD   89 (121)
T ss_dssp             EECTTCCEEEEEEEESCTTC-CEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGG
T ss_pred             EEcCCCcEEEEEEecCCCcC-ceEEEEEEeCCCCCCEEEEEEeCCCCeeeCcccCCcEEEEEECCCCEEEEEECCCCHHH
Confidence            45589999999998543212 2457898753     122 2111        1247898863  2   369999999876


Q ss_pred             CCcceeeeeeh
Q psy5692          79 GNLSVKKMKVE   89 (98)
Q Consensus        79 ~n~~~~~~~~~   89 (98)
                      .  +.=-|.+.
T Consensus        90 s--g~Y~C~~~   98 (121)
T 1kxv_C           90 T--AMYYCKPS   98 (121)
T ss_dssp             C--EEEEEEEE
T ss_pred             C--EEEEEEEE
Confidence            4  44455543

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=91.51  E-value=0.49  Score=30.50  Aligned_cols=40  Identities=20%  Similarity=0.338  Sum_probs=28.5

Q ss_pred             EEeeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeec
Q psy5692          12 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYL   53 (98)
Q Consensus        12 ~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p   53 (98)
                      ++... .|..|.++.|.|.+...-.. .....|.+++..|..
T Consensus         4 ~i~~~-~v~~G~~v~l~C~~~~~~~p-~~~~~W~k~~~~l~~   43 (184)
T 3b5h_A            4 TVFTT-VEDLGSKILLTCSLNDSATE-VTGHRWLKGGVVLKE   43 (184)
T ss_dssp             EEEEE-EEEETTEEEEEEEEESCSSC-CCEEEEESSSEEEEC
T ss_pred             ceEEE-EEecCCCEEEEEECCCCCCC-ceEEEEEeCCEEeec
Confidence            45555 78899999999997544322 235789999876654

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=91.45  E-value=0.066  Score=36.15  Aligned_cols=55  Identities=13%  Similarity=0.184  Sum_probs=29.9

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCCeeeecC--------cCCCceEEEccCccEEEEeEee
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN--------TDTGGKYVVLSSGDLYVQIRLS   76 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~--------~~~dgKY~vlpsGeL~Ir~v~~   76 (98)
                      ++.|.++.|.|.+..+-.. -...+|.+|+..|.+.        .+.+|.|.+.  +.|.|..++.
T Consensus       146 ~~~g~~v~L~C~~~g~~p~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~--s~L~i~~~~~  208 (233)
T 3bqu_C          146 QLTSGGASVVCFLNNFYPK-DINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMS--STLTLTKDEY  208 (233)
T ss_dssp             HHHTTEEEEEEEEEEEBSS-CEEEEEEEC-----CCEEEEECCCCTTTCCEEEE--EEEEEEHHHH
T ss_pred             hhcCCceEEEEEEccccCC-ceEEEEEECCeeCCCCceEecCCccCCCCCEEEE--EEEEECHHHh
Confidence            4569999999998642211 1247899998555332        1345666542  3455655444

>3oai_A Maltose-binding periplasmic protein, myelin prote; schwann cell membrane protein, immunoglobulin-folding, inter adhesion, tetramer; HET: MAL; 2.10A {Escherichia coli}

Probab=91.44  E-value=0.15  Score=38.91  Aligned_cols=70  Identities=13%  Similarity=0.148  Sum_probs=42.5

Q ss_pred             ceeecCeEEEEccCCCC-ccceeEEeEEccCC------eeeecC----------cCCCceEEEccC-----ccEEEEeEe
Q psy5692          18 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD------VNIYLN----------TDTGGKYVVLSS-----GDLYVQIRL   75 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~-V~d~V~V~SW~~Dd------~~I~p~----------~~~dgKY~vlps-----GeL~Ir~v~   75 (98)
                      .+..|.+++|.|.+.+. ...-.....|.+..      ..++-.          ....||+....+     ..|.|++++
T Consensus       396 ~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~  475 (507)
T 3oai_A          396 HGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPRWKDGSIVIHNLD  475 (507)
T ss_dssp             EEETTCCEEECCEECCSSCCCSSCEEEEEEEETTCSCCEEEEEEETTEEEECTTCTTTTTEEECCBGGGTBCCEEECSCC
T ss_pred             EEecCCcEEEeeEecCCCCCCCceEEEEEEcCCCCCceEEEEEecCCcccCCCCccccceEEEecCCCCCceeEEECCCC
Confidence            45689999999998322 21123356687542      122211          123678887644     479999999


Q ss_pred             eecCCcceeeeeeh
Q psy5692          76 SITGNLSVKKMKVE   89 (98)
Q Consensus        76 ~~~~n~~~~~~~~~   89 (98)
                      .+|.  ..=.|.+.
T Consensus       476 ~~D~--g~Y~C~v~  487 (507)
T 3oai_A          476 YSDN--GTFTCDVK  487 (507)
T ss_dssp             GGGC--EEEEEEEE
T ss_pred             cccC--eEEEEEEE
Confidence            9884  44555553

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=91.42  E-value=0.21  Score=32.62  Aligned_cols=50  Identities=20%  Similarity=0.117  Sum_probs=34.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEe
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRL   75 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~   75 (98)
                      .+..|.++.|.|.+..+-...  ..+|.+++..+.+...    +  ..++.|.|.+++
T Consensus       117 ~~~~g~~~~l~C~~~g~p~p~--~v~W~~~~~~~~~~~~----~--~~~~~L~i~~~~  166 (195)
T 2c5d_C          117 TVAANTPFNLSCQAQGPPEPV--DLLWLQDAVPLATAPG----H--GPQRSLHVPGLN  166 (195)
T ss_dssp             EECTTCCEEEEEEEECSSCCC--EEEEEESSCBSSSSTT----S--SCCEEEEECCCS
T ss_pred             EEcCCCEEEEEeECCCCCCCC--EEEEEECCEeccCCCC----c--CCCCeEEEcccc
Confidence            567899999999986543321  4689999876644211    1  566777777766

>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*

Probab=91.36  E-value=0.15  Score=35.51  Aligned_cols=66  Identities=14%  Similarity=0.048  Sum_probs=42.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----e-eeecCc----CCCceEEEc--c---CccEEEEeEeeecCCcc
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----V-NIYLNT----DTGGKYVVL--S---SGDLYVQIRLSITGNLS   82 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~-~I~p~~----~~dgKY~vl--p---sGeL~Ir~v~~~~~n~~   82 (98)
                      .|..|.+|.|.|.+.....   ....|.+..     . .+|-..    ...+||.+.  +   +..|.|++++.+|.  +
T Consensus        12 ~v~~G~~v~L~C~~s~~~~---~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~Ds--g   86 (194)
T 1lp9_E           12 TLTEGLPVMLNCTYQSTYS---PFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDS--A   86 (194)
T ss_dssp             EEETTSCEEECEEEECSSS---CCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGC--E
T ss_pred             EEecCCCEEEEEEeCCCCC---ceEEEEEeCCCCCeEEEEEEcCCCCcccCCCeEEEecCCCCEEEEEEcccCcccC--e
Confidence            4558999999999754432   236898653     1 333221    236899986  2   45799999998774  4


Q ss_pred             eeeeee
Q psy5692          83 VKKMKV   88 (98)
Q Consensus        83 ~~~~~~   88 (98)
                      +=-|.+
T Consensus        87 ~Y~C~~   92 (194)
T 1lp9_E           87 LYYCAL   92 (194)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            444544

>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=90.69  E-value=0.037  Score=39.19  Aligned_cols=66  Identities=15%  Similarity=0.214  Sum_probs=42.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC------eeeecC----cCCCceEEEcc-----CccEEEEeEeeecCCcc
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIYLN----TDTGGKYVVLS-----SGDLYVQIRLSITGNLS   82 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd------~~I~p~----~~~dgKY~vlp-----sGeL~Ir~v~~~~~n~~   82 (98)
                      .|..|.+|.|.|.+......   ...|++..      ..||-.    ....|||.+..     +..|.|++++.+|.  +
T Consensus        11 ~v~~G~svtL~C~~s~~~~~---~v~Wyrq~~g~~~~~li~~~~~~~~~~~~R~s~~~~~~~~~~sL~I~~v~~~Ds--G   85 (185)
T 3c6l_A           11 TVWEGETAILNCSYEDSTFD---YFPWYHQFPGESPALLIAIRPVSNKKEDGRFTIFFNKREKKFSLHIADSQPGDS--A   85 (185)
Confidence            45689999999998654332   57899864      122321    12368998862     44799999998874  3


Q ss_pred             eeeeee
Q psy5692          83 VKKMKV   88 (98)
Q Consensus        83 ~~~~~~   88 (98)
                      +-.|.+
T Consensus        86 ~Y~C~~   91 (185)
T 3c6l_A           86 TYFCAA   91 (185)
Confidence            444444

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=91.29  E-value=0.099  Score=35.12  Aligned_cols=55  Identities=16%  Similarity=0.308  Sum_probs=33.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEcc----CCeeeecCcCCCceEEE----------ccCccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQ----DDVNIYLNTDTGGKYVV----------LSSGDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~----Dd~~I~p~~~~dgKY~v----------lpsGeL~Ir~v~~~~   78 (98)
                      .+..|.++.|.|.+..+-..   ..+|.+    ++..+.+.   +..+..          ..++.|.|.++..+|
T Consensus       125 ~~~~g~~v~L~C~~~~~p~p---~v~W~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  193 (241)
T 3grw_A          125 TAVLGSDVEFHCKVYSDAQP---HIQWLKHVEVNGSKVGPD---GTPYVTVLKSWISESVEADVRLRLANVSERD  193 (241)
T ss_dssp             ECCTTCCEEEEEEEECSSCC---EEEEEEECCSSSCSSCTT---TCCCEEEEEEEECSBSEEEEEEEECSCCGGG
T ss_pred             eecCCCEEEEEEEEecCCCC---EEEEEEcccCCCcccCCC---CceeeeeeeEeeeeecCCceEEEECcCCccc
Confidence            46679999999998554333   678998    55544331   222221          134567777776665

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=91.28  E-value=0.038  Score=43.70  Aligned_cols=55  Identities=11%  Similarity=0.206  Sum_probs=0.0

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc-CccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS-SGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp-sGeL~Ir~v~~~~~   79 (98)
                      .|..|.++.|.|.+...-.   -...|.+++..|.+    ++++.+.. +|.|.|++++.+|.
T Consensus       677 ~v~~g~~~~l~C~~~g~P~---p~v~W~k~g~~l~~----~~~~~~~~~~~~L~I~~v~~~D~  732 (772)
T 3v2a_R          677 TTSIGESIEVSCTASGNPP---PQIMWFKDNETLVE----DSGIVLKDGNRNLTIRRVRKEDE  732 (772)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             EEeCCCCEEEEEEeCccCC---CeEEEEECCeECcC----CCCeEEcCCCcEEEECcCCHHHC
Confidence            5778999999999753322   25689999977754    34666654 88999999998874

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=91.24  E-value=0.15  Score=37.29  Aligned_cols=53  Identities=11%  Similarity=0.125  Sum_probs=36.2

Q ss_pred             eecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeec
Q psy5692          20 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSIT   78 (98)
Q Consensus        20 irGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~   78 (98)
                      ..|.+++|.|.+...  ...-...|..++..+ +.  ..+++. ..+|.|.|.+++..|
T Consensus        19 ~~G~~v~l~C~~~~~--~~~~~i~W~~~~~~~-~~--~~~~~~-~~~~~L~i~~v~~~d   71 (325)
T 1n26_A           19 LPGDSVTLTCPGVEP--EDNATVHWVLRKPAA-GS--HPSRWA-GMGRRLLLRSVQLHD   71 (325)
T ss_dssp             CTTCCEEEECTTSCT--TCCSEEEEEEECSSS-SC--CCEEEE-EESSEEEECSCCGGG
T ss_pred             CCCCcEEEEeCCCCC--CCCceEEEEECCccC-Cc--cccccc-cccceEEecccchhh
Confidence            489999999996532  112345799988544 21  234555 457999999998876

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=91.19  E-value=0.024  Score=40.80  Aligned_cols=59  Identities=15%  Similarity=0.301  Sum_probs=36.1

Q ss_pred             eeecCeEEEEccCCCCc-cceeEEeEEccCC-eeeecC-----cCCCceEEEccCccEEEEeEeeecC
Q psy5692          19 VILGNTAVLRCQIPSYM-SEYIIVTSWIQDD-VNIYLN-----TDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V-~d~V~V~SW~~Dd-~~I~p~-----~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      +..|.+|.|.|.+..+- ++-....+|.+++ ..+...     ...+|+|.  .++.|.|.+++.+|+
T Consensus       125 v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~--~~~~L~I~~~~~~D~  190 (323)
T 2wqr_A          125 LFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLT--VTSTLPVGTRDWIEG  190 (323)
T ss_dssp             HHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEE--EEEEEECCHHHHHTT
T ss_pred             hccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEE--EEEEEEECHHHccCC
Confidence            56799999999975331 2211247899976 433211     13456665  456788888777663

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=91.18  E-value=0.57  Score=30.69  Aligned_cols=47  Identities=13%  Similarity=0.248  Sum_probs=30.3

Q ss_pred             eecCeEEEEccCC-CCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEE
Q psy5692          20 ILGNTAVLRCQIP-SYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQ   72 (98)
Q Consensus        20 irGNtAVLkC~IP-s~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir   72 (98)
                      ..|+++.|.|.++ .+-..   ..+|.+++..|.+   ...++...+.|.||+.
T Consensus       119 ~~g~~~~l~C~~~~g~P~p---~i~W~k~g~~l~~---~~~~~~~~~~~~~~~~  166 (201)
T 1dr9_A          119 PTSNIRRIICSTSGGFPEP---HLSWLENGEELNA---INTTVSQDPETELYAV  166 (201)
T ss_dssp             SSTTEEEEEEEEEEESSCE---EEEEEESSCEECC---SEEEEEECTTTCCEEE
T ss_pred             CCCCeEEEEEecCCccCCC---EEEEEECCEECcc---ccceEEecCCCcEEEE
Confidence            3588999999974 33332   5789999876643   2345555566555443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=91.15  E-value=0.062  Score=39.32  Aligned_cols=66  Identities=5%  Similarity=0.042  Sum_probs=40.7

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEE------ccCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV------LSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~v------lpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+..|.++.|.|.+..+-..   ..+|.+++..|..+.....++..      ..+|.|.|.+++.+|.  ..-.|..
T Consensus       257 ~~~~g~~v~l~C~~~g~P~p---~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~--G~Y~C~a  328 (347)
T 2ifg_A          257 TAVEMHHWCIPFSVDGQPAP---SLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNN--GNYTLLA  328 (347)
T ss_dssp             CCEESSSEEEEEEEEEESCC---EEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGC--EEEEEEE
T ss_pred             cCccCceEEEEEEeeecCCC---cEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccC--ceEEEEE
Confidence            56789999999998655333   45899998766431110111111      2367799999988773  3444543

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=91.14  E-value=0.083  Score=35.35  Aligned_cols=54  Identities=15%  Similarity=0.202  Sum_probs=31.6

Q ss_pred             eecCeEEEEccCCCCccceeEEeEEccCCeeeecC--------cCCCceEEEccCccEEEEeEee
Q psy5692          20 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN--------TDTGGKYVVLSSGDLYVQIRLS   76 (98)
Q Consensus        20 irGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~--------~~~dgKY~vlpsGeL~Ir~v~~   76 (98)
                      +.|+++.|.|.+..+-.. -...+|.+++..|.+.        .+.+|.|.+.  ..|.|..++.
T Consensus       127 ~~g~~v~L~C~~~g~~P~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~--s~L~i~~~~~  188 (216)
T 2xzc_L          127 LKSGTASVVCLLNNFYPR-EAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS--STLTLSKADY  188 (216)
T ss_dssp             HHTTEEEEEEEEEEEBSS-CCEEEEEETTEECCSSEEEEECCCCTTTCCEEEE--EEEEEEHHHH
T ss_pred             ccCCcEEEEEEEEeEcCC-ceEEEEEECCeecCCCeeEecCcccCCCCCEEEE--EEEEECHHHh
Confidence            469999999998642211 1247899998665332        1245666442  2455555443

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=91.13  E-value=0.073  Score=35.86  Aligned_cols=67  Identities=15%  Similarity=0.196  Sum_probs=41.6

Q ss_pred             ceeecCeEEEEccCCCC-ccceeEEeEEccCCe----eeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeeehHH
Q psy5692          18 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDDV----NIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVEEE   91 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~-V~d~V~V~SW~~Dd~----~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~~~   91 (98)
                      .+..|.++.|.|.+..+ -+.  ...+|.+++.    ...|.....|.|.+  ++.|.|.++...+   ..-.|.+.-+
T Consensus       136 ~~~~g~~v~L~C~~~g~~P~p--~~v~W~~~~~~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~~---g~Y~C~a~n~  207 (220)
T 1pz5_B          136 SDTSGSSVTLGCLVKGYFPEP--VTVKWNYGALSSGVRTVSSVLQSGFYSL--SSLVTVPSSTWPS---QTVICNVAHP  207 (220)
T ss_dssp             CCSCSSSEEEEEEEEEEBSSC--CEEEEGGGTCCTTEEECCCEEETTEEEE--EEEEEECGGGTTT---SCCEEEEEEG
T ss_pred             ccCCCCcEEEEEEEEEEeCCC--eEEEEecCCcccceEEcCCcccCCeEEE--EEEEEEcchhcCC---ceEEEEEEEC
Confidence            35689999999998633 222  2578999874    22332212277776  5778887766522   5566766543

>3b9v_A Heavy chain variable domain; antibody engineering, phage display, immune system; 1.80A {Homo sapiens} PDB: 1fvc_B 3p9w_B 1fgv_H 2vh5_H*

Probab=91.00  E-value=0.14  Score=32.33  Aligned_cols=68  Identities=12%  Similarity=0.168  Sum_probs=41.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----e-eeecC---------cCCCceEEEcc-----CccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----V-NIYLN---------TDTGGKYVVLS-----SGDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~-~I~p~---------~~~dgKY~vlp-----sGeL~Ir~v~~~   77 (98)
                      .|..|.+|.|.|.+.+.... -....|.+..     . .++-.         ....+||.+..     +.-|.|++++.+
T Consensus        11 ~~~~G~~vtL~C~~~~~~~~-~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~   89 (120)
T 3b9v_A           11 LVQPGGSLRLSCAASGFNIK-DTYIGWVRRAPGKGEEWVASIYPTNGYTRYADSVKGRFTISADTSKNTAYLQMNSLRAE   89 (120)
T ss_dssp             EECTTCCEEEEEEEESSCGG-GSEEEEEEECTTCCEEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             EEeCCccEEEEEEeeCcccc-ccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCeEEEEEcCCCCEEEEEECCCCHH
Confidence            45589999999998543212 2357888743     1 22211         11357998863     236999999987


Q ss_pred             cCCcceeeeee
Q psy5692          78 TGNLSVKKMKV   88 (98)
Q Consensus        78 ~~n~~~~~~~~   88 (98)
                      |.  +.=-|.+
T Consensus        90 Ds--g~Y~C~~   98 (120)
T 3b9v_A           90 DT--AVYYCAR   98 (120)
T ss_dssp             GC--EEEEEEE
T ss_pred             HC--EEEEEEE
Confidence            74  4444544

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=90.94  E-value=0.11  Score=36.87  Aligned_cols=58  Identities=14%  Similarity=0.196  Sum_probs=38.7

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEcc--CCe---ee-ecC----cCCCceEEEcc---CccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQ--DDV---NI-YLN----TDTGGKYVVLS---SGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~--Dd~---~I-~p~----~~~dgKY~vlp---sGeL~Ir~v~~~~~   79 (98)
                      .+..|.++.|.|.+...-    ....|.+  +..   .| +..    ...++||.+..   ++.|.|++++.+|.
T Consensus       173 ~v~~G~~v~L~C~~~~~~----~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds  243 (282)
T 1qok_A          173 SASPGEKVTITCSASSSV----SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDA  243 (282)
T ss_dssp             EECTTCCEEEEEEESSCC----SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEcCCCcEEEEEEecCCC----ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHC
Confidence            467899999999986544    3678998  332   12 211    12357888754   44699999988773

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=90.87  E-value=0.12  Score=38.01  Aligned_cols=57  Identities=14%  Similarity=0.186  Sum_probs=35.1

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCCeeeecC--------cCCCceEEEccCccEEEEeEeeec
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN--------TDTGGKYVVLSSGDLYVQIRLSIT   78 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~--------~~~dgKY~vlpsGeL~Ir~v~~~~   78 (98)
                      ++.|.++.|.|.+..+-.. -...+|.+|+..|.+.        .+.+|.|.+  ++.|.|.+++.+|
T Consensus       128 ~~~g~~~~l~C~~~g~~p~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~--~~~L~i~~~~~~d  192 (438)
T 1qgc_4          128 QLTSGGASVVCFLNNFYPK-DINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM--SSTLTLTKDEYER  192 (438)
T ss_dssp             HHHTTEEEEEEEEEEEBSS-CEEEEEEETTEEECTTEEEEEECCCTTTCCEEE--EEEEEEEHHHHHT
T ss_pred             hccCCceEEEEEEccccCC-CcEEEEEECCEEcCCCceeccccccCCCCcEEE--EEEEEEeCcccCC
Confidence            4568999999997531111 1357899998766443        124566654  4567776665544

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=90.86  E-value=0.29  Score=33.00  Aligned_cols=35  Identities=14%  Similarity=0.269  Sum_probs=24.1

Q ss_pred             ceeecCeEEEEccCCCCcc--ceeEEeEEccCCeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMS--EYIIVTSWIQDDVNIY   52 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~--d~V~V~SW~~Dd~~I~   52 (98)
                      .+..|.++.|.|.+...-.  +..-..+|.+++..+.
T Consensus       181 ~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~  217 (262)
T 3rjd_A          181 PLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLR  217 (262)
T ss_dssp             SEETTCCEEEEEECCCCCC-----EEEEEEETTEEEE
T ss_pred             eecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEec
Confidence            4778999999999864432  3233468999986664

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=90.82  E-value=0.13  Score=34.77  Aligned_cols=66  Identities=12%  Similarity=0.301  Sum_probs=38.5

Q ss_pred             eecCeEEEEccCCCCccceeEEeEEccCCeee----ecCc--CCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          20 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI----YLNT--DTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        20 irGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I----~p~~--~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      ..|.++.|.|.+..+--..-...+|.+++..+    ++..  +.+|+|.+..  .|.|..++..|  ...-.|.++
T Consensus       136 ~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~s--~L~i~~~~~~d--~g~ytC~v~  207 (221)
T 3m8o_H          136 QPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSS--QLTLPATQCLA--GKSVTCHVK  207 (221)
T ss_dssp             CCTTEEEEEEEEEEEBSSCSEEEEESCCSTTCEEEECCCEECSSSSCEEEEE--EEEEEGGGSCT--TCEEEEEEE
T ss_pred             ccCCCEEEEEEEEeeECCCCEEEEEEECCEECceEEcCceeeCCCCcEEEEE--EEEECHHHcCC--CCeEEEEEE
Confidence            47999999999875333211346899988443    1211  4578887743  46665554332  233455544

>1zvh_A Immunoglobulin heavy chain antibody variable domain; beta sandwich, immunoglobulin fold, protein-protein heterocomplex; 1.50A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 3dwt_A 1g6v_K 1zv5_A 1kxq_E

Probab=90.78  E-value=0.21  Score=32.75  Aligned_cols=68  Identities=15%  Similarity=0.238  Sum_probs=41.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC------eeeecCc---------CCCceEEEcc--C-c--cEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIYLNT---------DTGGKYVVLS--S-G--DLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd------~~I~p~~---------~~dgKY~vlp--s-G--eL~Ir~v~~~   77 (98)
                      .|..|.++.|.|.+.++... -....|.+..      ..++-..         ...+||.+.-  + +  -|.|++++.+
T Consensus        11 ~v~~G~~vtL~C~~s~~~~~-~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~   89 (134)
T 1zvh_A           11 SVQAGGSLRLSCAASGYIAS-INYLGWFRQAPGKEREGVAAVSPAGGTPYYADSVKGRFTVSLDNAENTVYLQMNSLKPE   89 (134)
T ss_dssp             EECTTCCEEEEEEEEESGGG-EEEEEEEEECTTSCCEEEEEECTTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGG
T ss_pred             EEccCCCEEEEEEeCCCCcC-CcEEEEEEECCCCCCEEEEEEEcCCCceecCcccCCcEEEEEcCCCCEEEEEECCCCHH
Confidence            45589999999997543222 2457898743      1222111         1247898862  2 2  5999999987


Q ss_pred             cCCcceeeeee
Q psy5692          78 TGNLSVKKMKV   88 (98)
Q Consensus        78 ~~n~~~~~~~~   88 (98)
                      |.  ++=-|.+
T Consensus        90 Ds--G~Y~C~~   98 (134)
T 1zvh_A           90 DT--ALYYCAA   98 (134)
T ss_dssp             GC--EEEEEEE
T ss_pred             HC--EEEEEEE
Confidence            64  4444544

>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand complex, immunoglobulin-like sandwich, T cell, B cell, programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1

Probab=90.78  E-value=0.56  Score=30.69  Aligned_cols=60  Identities=8%  Similarity=0.275  Sum_probs=38.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC------eeeecCc-----CCCceEEEc--cCc---cEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIYLNT-----DTGGKYVVL--SSG---DLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd------~~I~p~~-----~~dgKY~vl--psG---eL~Ir~v~~~~~   79 (98)
                      .|..|.++.|.|.+......  ....|.+..      ..|+-..     ...|||.+.  +++   -|.|++++.+|.
T Consensus        20 ~v~~G~~vtL~C~~~~~~~~--~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Ds   95 (134)
T 3bik_B           20 TVSEGANATFTCSLSNWSED--LMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDS   95 (134)
T ss_dssp             EEETTSCEEEEEEESSCCTT--CEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEECSCCGGGC
T ss_pred             EEeCCCCEEEEEEeCCCCCC--cEEEEEEcCCCCCceEEEEEcCCCCCcccCCCEEEEecCCCCEEEEEECCCChHHC
Confidence            34589999999997643222  346898742      2222211     136899884  444   599999987764

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=90.78  E-value=0.17  Score=35.95  Aligned_cols=68  Identities=13%  Similarity=0.077  Sum_probs=42.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-ecC----cCCCceEEEcc--Cc---cEEEEeEeeecCCcc
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN----TDTGGKYVVLS--SG---DLYVQIRLSITGNLS   82 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~p~----~~~dgKY~vlp--sG---eL~Ir~v~~~~~n~~   82 (98)
                      .|..|.+|.|.|.+..+-.+ -....|++..     ..| +..    ....|||.+..  ++   .|.|++++.+|.  +
T Consensus        12 ~v~~G~~vtL~C~~s~~~~~-~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Ds--g   88 (229)
T 1hxm_A           12 PVSIGVPATLRCSMKGEAIG-NYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDE--G   88 (229)
T ss_dssp             EEETTCCEEEEEEECSSCGG-GSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGC--E
T ss_pred             EEcCCCCEEEEeEecCCccC-cceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCCHhHC--e
Confidence            45689999999998633212 1347898742     223 221    12368999873  22   699999998775  4


Q ss_pred             eeeeee
Q psy5692          83 VKKMKV   88 (98)
Q Consensus        83 ~~~~~~   88 (98)
                      .-.|.+
T Consensus        89 ~Y~C~~   94 (229)
T 1hxm_A           89 SYYCAC   94 (229)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            444544

>2x1q_A Gelsolin nanobody; contractIle protein; 1.06A {Lama glama} PDB: 2x1p_A 2xa3_A 3k7u_A 3sn6_N* 3stb_A 2x1o_A 3k80_A 1ol0_A 1u0q_A 1qd0_A* 3ezj_B 3p0g_B* 1mvf_A 1t2j_A

Probab=90.72  E-value=0.24  Score=31.92  Aligned_cols=69  Identities=12%  Similarity=0.074  Sum_probs=39.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC------eeeecCc---------CCCceEEEcc-----CccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIYLNT---------DTGGKYVVLS-----SGDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd------~~I~p~~---------~~dgKY~vlp-----sGeL~Ir~v~~~   77 (98)
                      .|..|.+|.|.|.+.+.... -....|.+..      ..++-..         ...+||.+..     +.-|.|++++.+
T Consensus        11 ~v~~G~~vtL~C~~s~~~~~-~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~   89 (127)
T 2x1q_A           11 LVQPGGSLRLSCAASGRTFS-NYRMGWFRQAPGKEREFVATISQSGAATAYADSVKGRFTFSRDNAKNLLYLEMLSLEPE   89 (127)
T ss_dssp             EECTTCCEEEEEC------C-CSEEEEEEECTTSCCEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             EEcCCCCEEEEEEeCCcccC-CcEEEEEEECCCCCCEEEEEEecCCCceeeCcccCCcEEEEEeCCCCEEEEEEcCCCHH
Confidence            45589999999997643211 1347898753      1222211         1357998863     236999999987


Q ss_pred             cCCcceeeeeeh
Q psy5692          78 TGNLSVKKMKVE   89 (98)
Q Consensus        78 ~~n~~~~~~~~~   89 (98)
                      |.  ++=-|.+.
T Consensus        90 Ds--g~Y~C~~~   99 (127)
T 2x1q_A           90 DT--AVYYCAAS   99 (127)
T ss_dssp             GC--EEEEEEEE
T ss_pred             HC--EEEEEEEE
Confidence            74  44455543

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=90.68  E-value=0.036  Score=39.34  Aligned_cols=57  Identities=18%  Similarity=0.223  Sum_probs=34.4

Q ss_pred             eeecCeEEEEccCCCCc--cceeEEeEEccCCeeeec------CcCCCceEEEccCccEEEEeEeeec
Q psy5692          19 VILGNTAVLRCQIPSYM--SEYIIVTSWIQDDVNIYL------NTDTGGKYVVLSSGDLYVQIRLSIT   78 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V--~d~V~V~SW~~Dd~~I~p------~~~~dgKY~vlpsGeL~Ir~v~~~~   78 (98)
                      |..|.+|.|.|.+..+-  ..- ...+|.+++..+..      ....+|+|..  ++.|.|.+++..|
T Consensus        29 v~~G~~v~L~C~~~g~~~~P~~-~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~--~s~L~I~~~~~~D   93 (239)
T 1i1c_A           29 LGGGLTPKVTCVVVDISQNDPE-VRFSWFIDDVEVHTAQTHAPEKQSNSTLRS--VSELPIVERDWLN   93 (239)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCC-CEEEEEESSCEECCCEECCCEECTTSCEEE--EEEEECCHHHHHT
T ss_pred             cccCCcEEEEEEEecCccCCCC-CEEEEEECCccccCcccccceEcCCCcEEE--EEEEEEEhhHccC
Confidence            66899999999986331  111 25899999844421      1123566643  3456666665544

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=90.60  E-value=0.14  Score=36.34  Aligned_cols=68  Identities=12%  Similarity=0.076  Sum_probs=42.0

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-e--cCc-------CCCceEEEcc-----CccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-Y--LNT-------DTGGKYVVLS-----SGDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~--p~~-------~~dgKY~vlp-----sGeL~Ir~v~~~   77 (98)
                      .|..|.++.|.|.+...-... ....|.++.     ..| +  +..       ...+||.+..     ++.|.|++++.+
T Consensus       149 ~v~~G~~v~L~C~~~~~~~~~-~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~  227 (264)
T 2gjj_A          149 VVKTGASVKISCKASGYSFTG-YFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSE  227 (264)
T ss_dssp             EECTTCCEEEEEEEESSCGGG-SEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EEcCCCcEEEEEEEeCCccCC-eEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcc
Confidence            577899999999986443211 246898762     222 1  110       1257887752     468999999987


Q ss_pred             cCCcceeeeee
Q psy5692          78 TGNLSVKKMKV   88 (98)
Q Consensus        78 ~~n~~~~~~~~   88 (98)
                      |.  ..-.|.+
T Consensus       228 Ds--G~Y~C~a  236 (264)
T 2gjj_A          228 DS--ADYYCVR  236 (264)
T ss_dssp             GC--EEEEEEE
T ss_pred             cC--EEEEEEE
Confidence            74  3444444

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=90.55  E-value=0.21  Score=35.82  Aligned_cols=69  Identities=16%  Similarity=0.156  Sum_probs=42.6

Q ss_pred             ceeecCeEEEEccCCCCccc-e--eEEeEEccCC-----ee-eecC----cCCCceEEEccC---ccEEEEeEeeecCCc
Q psy5692          18 NVILGNTAVLRCQIPSYMSE-Y--IIVTSWIQDD-----VN-IYLN----TDTGGKYVVLSS---GDLYVQIRLSITGNL   81 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d-~--V~V~SW~~Dd-----~~-I~p~----~~~dgKY~vlps---GeL~Ir~v~~~~~n~   81 (98)
                      .|..|.++.|.|.+...-.. +  -....|.+++     .. ++..    ...++||.+..+   +.|.|++++.+|.  
T Consensus       170 ~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds--  247 (291)
T 2gki_A          170 AVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDL--  247 (291)
T ss_dssp             EEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC--
T ss_pred             EEcCCCcEEEEEEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHC--
Confidence            46789999999998644321 0  0157898852     12 2221    112678987654   4699999998774  


Q ss_pred             ceeeeee
Q psy5692          82 SVKKMKV   88 (98)
Q Consensus        82 ~~~~~~~   88 (98)
                      ..-.|.+
T Consensus       248 G~Y~C~a  254 (291)
T 2gki_A          248 AVYYCKQ  254 (291)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            3444443

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=90.49  E-value=0.19  Score=35.77  Aligned_cols=60  Identities=15%  Similarity=0.232  Sum_probs=38.9

Q ss_pred             ceeecCeEEEEccCCCCc-cceeEEeEEccCC-----e-eeecC---------cCCCceEEEcc-----CccEEEEeEee
Q psy5692          18 NVILGNTAVLRCQIPSYM-SEYIIVTSWIQDD-----V-NIYLN---------TDTGGKYVVLS-----SGDLYVQIRLS   76 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V-~d~V~V~SW~~Dd-----~-~I~p~---------~~~dgKY~vlp-----sGeL~Ir~v~~   76 (98)
                      .|..|.+++|.|.++.+- .+  ....|.+++     . .++..         ....+||.+..     ++.|.|++++.
T Consensus        37 ~v~~G~~v~L~C~~~g~~~~~--~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~  114 (282)
T 1qok_A           37 LVRSGTSVKLSCTASGFNIKD--SYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSLTS  114 (282)
T ss_dssp             EEETTCCEEEEEEEESSCGGG--SCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             EEeCCCeEEEEEeccCCCCCC--ceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcCCh
Confidence            567899999999976442 12  236788753     1 11211         12357998864     25799999998


Q ss_pred             ecC
Q psy5692          77 ITG   79 (98)
Q Consensus        77 ~~~   79 (98)
                      +|.
T Consensus       115 ~Ds  117 (282)
T 1qok_A          115 EDT  117 (282)
T ss_dssp             GGC
T ss_pred             hhC
Confidence            774

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=90.43  E-value=0.11  Score=35.48  Aligned_cols=66  Identities=23%  Similarity=0.327  Sum_probs=39.9

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCCeee----ecC-cCCCceEEEccCccEEEEeEeeecCCcceeeeeehH
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI----YLN-TDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVEE   90 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I----~p~-~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~~   90 (98)
                      +..|.++.|.|.+..+-.. -...+|.+++..+    ++. .+.+|.|.+  ++.|.|.+++..|   ..-.|.+.-
T Consensus       140 ~~~g~~v~L~C~~~g~~P~-p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~--~s~L~i~~~~~~~---g~Y~C~a~n  210 (225)
T 1op3_H          140 STSGGTAALGCLVKDYFPE-PVTVSWNSGALTSGVHTFPAVLQSSGLYSL--SSVVTVPSSSLGT---QTYICNVNH  210 (225)
T ss_dssp             CCCCCEEEEEEEEEEEBSS-CCEEECCTTSCCTTCEECCCEECTTSCEEE--EEEEEEEGGGTTC---CCCCEEEEE
T ss_pred             ccCCCcEEEEEEEEeEECC-CeEEEEecCCCcCCeEecCceeCCCCCEEE--EEEEEEechhcCC---CcEEEEEEc
Confidence            4579999999997633111 1367899988432    121 135677765  4568887665433   445566543

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=90.41  E-value=0.047  Score=39.33  Aligned_cols=68  Identities=19%  Similarity=0.233  Sum_probs=41.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----ee-eecC---------cCCCceEEEcc-----CccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VN-IYLN---------TDTGGKYVVLS-----SGDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~-I~p~---------~~~dgKY~vlp-----sGeL~Ir~v~~~   77 (98)
                      .|..|.+|+|.|.++.+-.. -....|.+.+     .. ++-.         ....+||.+..     ++.|.|++++.+
T Consensus        33 ~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~  111 (291)
T 2gki_A           33 LVKPGASVKMSCKASGYTFT-SYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSLTSE  111 (291)
T ss_dssp             EECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSCCGG
T ss_pred             EecCCCCEEEEEeccCCccc-ccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcCCHH
Confidence            56789999999998643211 1246788752     11 2211         12357887763     357999999987


Q ss_pred             cCCcceeeeee
Q psy5692          78 TGNLSVKKMKV   88 (98)
Q Consensus        78 ~~n~~~~~~~~   88 (98)
                      |.  ..-.|.+
T Consensus       112 Ds--G~Y~C~~  120 (291)
T 2gki_A          112 DS--AVYYCAR  120 (291)
T ss_dssp             GC--EEEEEEE
T ss_pred             HC--EEEEEEE
Confidence            75  3344444

>1xiw_D Immunoglobulin heavy chain variable region; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy3_B

Probab=90.40  E-value=0.21  Score=31.72  Aligned_cols=68  Identities=15%  Similarity=0.135  Sum_probs=41.5

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCC-----e-eeecC---------cCCCceEEEcc--C---ccEEEEeEeeec
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----V-NIYLN---------TDTGGKYVVLS--S---GDLYVQIRLSIT   78 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~-~I~p~---------~~~dgKY~vlp--s---GeL~Ir~v~~~~   78 (98)
                      |..|.++.|.|.+.+..... ....|.+..     . .++-.         ....+||.+..  +   --|.|++++.+|
T Consensus        12 ~~~G~~vtL~C~~~~~~~~~-~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~D   90 (122)
T 1xiw_D           12 VKPGASMKISCKASGYSFTG-YTMNWVKQSHGKNLEWMGLINPYKGVSTYNQKFKDKATLTVDKSSSTAYMELLSLTSED   90 (122)
T ss_dssp             ECTTCCEEEEEEEESSCGGG-EEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             EeCCCcEEEEEEeeCcccCC-CEEEEEEECCCCCcEEEEEEeccCCceeeCcccCCcEEEEEecCCCEEEEEECCCCHHH
Confidence            44799999999976432122 457897753     1 22211         11357998862  2   269999999876


Q ss_pred             CCcceeeeeeh
Q psy5692          79 GNLSVKKMKVE   89 (98)
Q Consensus        79 ~n~~~~~~~~~   89 (98)
                      .  +.=-|.+.
T Consensus        91 s--g~Y~C~~~   99 (122)
T 1xiw_D           91 S--AVYYCARS   99 (122)
T ss_dssp             C--EEEEEEEE
T ss_pred             C--EEEEEEEe
Confidence            4  44555543

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=90.40  E-value=0.082  Score=36.76  Aligned_cols=55  Identities=11%  Similarity=0.124  Sum_probs=32.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEE-ccCc--cEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV-LSSG--DLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~v-lpsG--eL~Ir~v~~~~~   79 (98)
                      .|..|.+++|.|..+.-    .....|.+++..+...   ..++.. ...+  .|.|.+++..|.
T Consensus        19 ~v~~G~~vtL~C~~~~~----~~~~~W~k~g~~~~~~---~~~~~~~~~~~~~~L~I~~v~~~D~   76 (218)
T 1uct_A           19 VIPLDGSVKIQCQAIRE----AYLTQLMIIKNSTYRE---IGRRLKFWNETDPEFVIDHMDANKA   76 (218)
T ss_dssp             EEETTCCEEEEECCCTT----CSEEEEEEEETTEEEE---CSEECC----CCCEEEECSCCGGGC
T ss_pred             ccCCCCCEEEEEEcCCC----CCEEEEEECCCccccc---ccccCCCCcceeeEEEEcccccccC
Confidence            57899999999998642    2346899987444221   111111 1234  677777766553

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=90.38  E-value=0.16  Score=34.36  Aligned_cols=33  Identities=18%  Similarity=0.379  Sum_probs=24.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYL   53 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p   53 (98)
                      .+..|.++.|.|.+..+-.   ...+|.+++..+.+
T Consensus       129 ~v~~G~~v~L~C~~~g~p~---~~v~W~~~~~~~~~  161 (218)
T 3k0w_A          129 KLMPGSTLVLQCVAVGSPI---PHYQWFKNELPLTH  161 (218)
T ss_dssp             EECTTCCEEEECEEEBSSC---CEEEEEETTEECTT
T ss_pred             eecCCCcEEEEEEecccCC---CeEEEEECCEECCC
Confidence            5778999999999843322   24799999876643

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=90.37  E-value=0.16  Score=36.59  Aligned_cols=56  Identities=16%  Similarity=0.178  Sum_probs=37.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCc---cEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG---eL~Ir~v~~~~   78 (98)
                      .+..|.++.|.|.+...-   .....|.+++..|...  ...++.+..+|   .|.|.+++..|
T Consensus       111 ~~~~g~~~~l~C~~~g~p---~~~i~W~~~g~~l~~~--~~~~~~~~~~~~~~~L~i~~~~~~d  169 (389)
T 2jll_A          111 YSWEGNPINISCDVKSNP---PASIHWRRDKLVLPAK--NTTNLKTYSTGRKMILEIAPTSDND  169 (389)
T ss_dssp             EECTTCCEEEEECEEEES---CCEEEEEETTEESSCT--TCTTEEEEECSSCEEEEECCCSTTS
T ss_pred             EeccCCEEEEEEEEEecC---CCeEEEEECCccCCcc--cCceEEEeccCCEEEEEECCCChhh
Confidence            356899999999874332   2457899998766432  22466666544   48888777655

>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A 3qib_C 2ial_A 2iam_C 2ian_D 4e41_D 4e42_A 3rug_E* 3axl_A

Probab=90.32  E-value=0.33  Score=35.11  Aligned_cols=65  Identities=17%  Similarity=0.338  Sum_probs=42.7

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-ecCc--CCCceEEEc--c---CccEEEEeEeeecCCccee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLNT--DTGGKYVVL--S---SGDLYVQIRLSITGNLSVK   84 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~p~~--~~dgKY~vl--p---sGeL~Ir~v~~~~~n~~~~   84 (98)
                      .|..|.++.|.|.+.+.    -....|.+..     ..| +-..  ...|||.+.  +   +.-|.|++++.+|.  ++-
T Consensus        14 ~v~~G~svtL~C~~s~~----~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~~~Ds--G~Y   87 (205)
T 3qjh_A           14 SLHEGTGSALRCNFTTT----MRAVQWFRKNSRGSLINLFYLASGTKENGRLKSAFDSKERYSTLHIRDAQLEDS--GTY   87 (205)
T ss_dssp             EEETTCCEEEEEECSSC----EEEEEEEEEC-CCCEEEEEEESSEEEEETTEEEEEETTTTEEEEEECSCCGGGC--EEE
T ss_pred             EEeCCCCEEEEEEEECC----cceEEEEEECCCCCcEEEEEECCCCccCCCEEEEEcCCCCEEEEEEeccccccC--eEE
Confidence            35589999999998766    2467898853     222 2211  135789885  3   34699999998874  444


Q ss_pred             eeee
Q psy5692          85 KMKV   88 (98)
Q Consensus        85 ~~~~   88 (98)
                      -|.+
T Consensus        88 ~Cav   91 (205)
T 3qjh_A           88 FCAA   91 (205)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4544

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=90.32  E-value=0.22  Score=38.29  Aligned_cols=31  Identities=13%  Similarity=0.254  Sum_probs=22.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI   51 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I   51 (98)
                      -|..|.++.|.|.+..+-.   ....|++++..+
T Consensus        59 ~V~~G~~v~L~C~v~g~P~---p~i~W~~~~~~l   89 (423)
T 3qs7_E           59 EVDVSASITLQVLVDAPGN---ISCLWVFKHSSL   89 (423)
T ss_dssp             EECSSCCEEEEEECSCCSS---CEEEEEETTEEE
T ss_pred             EEecCCcEEEEEEEEcCCC---CeEEEEECCCcc
Confidence            5678999999999876332   235899887443

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=90.30  E-value=0.09  Score=36.36  Aligned_cols=57  Identities=14%  Similarity=0.192  Sum_probs=33.9

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCCeeeecC--------cCCCceEEEccCccEEEEeEeeec
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN--------TDTGGKYVVLSSGDLYVQIRLSIT   78 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~--------~~~dgKY~vlpsGeL~Ir~v~~~~   78 (98)
                      ++.|.++.|.|.+..+-..- .-.+|.+++..+.+.        .+.+|.|.+  +..|.|..++..|
T Consensus       162 ~~~g~~v~L~C~~~g~~p~~-~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~--~s~L~i~~~~~~d  226 (252)
T 3bkj_L          162 QLTSGGASVVCFLNNFYPKD-INVKWKIDGSERQNGVLNSWTDQDSKDSTYSM--SSTLTLTKDEYER  226 (252)
T ss_dssp             HHHHTEEEEEEEEEEEBSSC-CEEEEEETTEEECSSEEEEECCCCTTTCCEEE--EEEEEEEHHHHHH
T ss_pred             hcCCCcEEEEEEEeeEeCCC-cEEEEEECCeecCCCeeeecCcccCCCCCEEE--EEEEEEcchhccC
Confidence            45799999999985322111 136899998665432        124556544  2346666665444

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=90.07  E-value=0.37  Score=31.71  Aligned_cols=63  Identities=16%  Similarity=0.204  Sum_probs=37.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEcc----CCeeeecCcCCCceEE---------EccCccEEEEeEeeecCCccee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQ----DDVNIYLNTDTGGKYV---------VLSSGDLYVQIRLSITGNLSVK   84 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~----Dd~~I~p~~~~dgKY~---------vlpsGeL~Ir~v~~~~~n~~~~   84 (98)
                      .+..|.++.|.|.+..+-..   ..+|.+    +...+.+.   +..+.         ...++.|.|.+++.+|.  ..-
T Consensus       129 ~~~~g~~~~l~C~~~~~p~p---~v~W~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~--G~Y  200 (231)
T 3ojm_B          129 STVVGGDVEFVCKVYSDAQP---HIQWIKHVEKNGSKYGPD---GLPYLKVLKHSGINSSNAEVLALFNVTEADA--GEY  200 (231)
T ss_dssp             EEETTCCEEEECCEECSSCC---EEEEEEECCBTTBSBCTT---SCBCEEEEEECSTTCSCTTEEEECSCCGGGC--EEE
T ss_pred             EEEeCCcEEEEEEEecCCCC---EEEEEECCCCCCccccCC---CcceEeEecccccccCCccEEEEecCCHHHC--eEE
Confidence            56789999999998654333   578988    44444331   11111         11235588888876663  344


Q ss_pred             eeee
Q psy5692          85 KMKV   88 (98)
Q Consensus        85 ~~~~   88 (98)
                      .|.+
T Consensus       201 ~C~a  204 (231)
T 3ojm_B          201 ICKV  204 (231)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4543

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=90.05  E-value=0.075  Score=35.32  Aligned_cols=56  Identities=18%  Similarity=0.296  Sum_probs=33.2

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCCeeeecC-------cCCCceEEEccCccEEEEeEeee
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-------TDTGGKYVVLSSGDLYVQIRLSI   77 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~-------~~~dgKY~vlpsGeL~Ir~v~~~   77 (98)
                      +..|.++.|.|.+..+-..- .-.+|.+++..|.+.       ...+|.|.+.  ..|.|..+...
T Consensus       123 ~~~g~~v~l~C~~~g~~p~~-~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~--s~L~i~~~~~~  185 (211)
T 3tv3_L          123 ELQANKATLVCLISDFYPGA-VTVAWKADSSPVKAGVETTTPSKQSNNKYAAS--SYLSLTPEQWK  185 (211)
T ss_dssp             HHHTTCEEEEEEEEEEBSSC-CEEEEEETTEEECTTEEECCCEECTTSSEEEE--EEEEECHHHHH
T ss_pred             hhcCCCeEEEEEeeeecCCC-eEEEEEECCeecCCCcccCCceECCCCCEEEE--EEEEEcHHHhC
Confidence            34699999999975322221 346899998666321       1346677653  23555554433

>1mfa_H IGG1-lambda Se155-4 FAB (heavy chain); immunoglobulin; HET: GLA MMA; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy2_B

Probab=89.99  E-value=0.26  Score=31.14  Aligned_cols=67  Identities=13%  Similarity=0.099  Sum_probs=40.5

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCC-----e-eeecC---------cCCCceEEEc--cC---ccEEEEeEeeec
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----V-NIYLN---------TDTGGKYVVL--SS---GDLYVQIRLSIT   78 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~-~I~p~---------~~~dgKY~vl--ps---GeL~Ir~v~~~~   78 (98)
                      |..|.++.|.|.+.+..... ....|.+..     . .++-.         ....+||.+.  ++   .-|.|++++.+|
T Consensus        12 ~~~G~~v~L~C~~~~~~~~~-~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~D   90 (120)
T 1mfa_H           12 ARPGASVKMSCKASGYTFTN-YWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTSED   90 (120)
T ss_dssp             ECTTCCEEEEEEEESSCGGG-SEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EeCCCCEEEEEEeeCccccc-cEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEeCCCCEEEEEECCCCHHH
Confidence            44899999999975432111 347888742     1 22211         1235799886  22   369999999877


Q ss_pred             CCcceeeeee
Q psy5692          79 GNLSVKKMKV   88 (98)
Q Consensus        79 ~n~~~~~~~~   88 (98)
                      .  +.=-|.+
T Consensus        91 s--g~Y~C~~   98 (120)
T 1mfa_H           91 S--AVYYCTR   98 (120)
T ss_dssp             C--EEEEEEE
T ss_pred             C--EEEEEEE
Confidence            4  4444544

>3osk_A Cytotoxic T-lymphocyte protein 4; beta sandwich, homodimer, immunoglobulin superfamily (beta S fold, receptor, signalling, B7-1(CD80), B7-2(CD86); HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 PDB: 2x44_D 1i85_C 1ah1_A* 1i8l_C* 3bx7_C

Probab=89.98  E-value=0.53  Score=30.48  Aligned_cols=69  Identities=13%  Similarity=0.041  Sum_probs=40.7

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC--e----ee--ecCcC----CCce-EEEcc---CccEEEEeEeeecCCc
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V----NI--YLNTD----TGGK-YVVLS---SGDLYVQIRLSITGNL   81 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd--~----~I--~p~~~----~dgK-Y~vlp---sGeL~Ir~v~~~~~n~   81 (98)
                      .|..|.++.|.|...+....-..-..|.+..  .    .+  |...+    ..+| |....   +.-|.|++++.+|.  
T Consensus        12 ~~~~G~~vtL~C~~s~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~r~f~~~~~~~~~sL~I~~l~~~Ds--   89 (130)
T 3osk_A           12 LASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDT--   89 (130)
T ss_dssp             ECCTTSCEEEEEEECCCSSCCEEEEEEEEEETTEEEEEEEEEEETTSCCCCCSCCSEEEEEETTEEEEEECSCCGGGC--
T ss_pred             EEeCCCeEEEEEEecCCCCCceEEEEEEEeCCCCCcEEEEEEEcCCCceeeecceEEeccCCCCEEEEEEcCCChHHC--
Confidence            3458999999999876532113456788753  1    22  32211    1355 65543   33489999998884  


Q ss_pred             ceeeeee
Q psy5692          82 SVKKMKV   88 (98)
Q Consensus        82 ~~~~~~~   88 (98)
                      ++=-|.+
T Consensus        90 g~Y~C~~   96 (130)
T 3osk_A           90 GLYICKV   96 (130)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            4444544

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=89.93  E-value=1.4  Score=31.14  Aligned_cols=42  Identities=14%  Similarity=0.349  Sum_probs=27.5

Q ss_pred             EEEEeeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeec
Q psy5692          10 EINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYL   53 (98)
Q Consensus        10 ev~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p   53 (98)
                      .+.+... .+..|.++.|.|.+..+-..- ....|.+|+..|.+
T Consensus       224 ~i~~~~~-~~~~G~~v~l~C~~~g~~p~~-~~v~W~k~g~~l~~  265 (327)
T 2wng_A          224 TLEVTQQ-PVRAENQVNVTCQVRKFYPQR-LQLTWLENGNVSRT  265 (327)
T ss_dssp             EEEEEEE-CCSSTTCCEEEEEEEEEBSSC-EEEEEEETTEEEEE
T ss_pred             EEEEecC-CcCCCCcEEEEEEEccccCCC-cEEEEEECCeEccC
Confidence            3444444 477999999999986321111 24679999966644

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=89.84  E-value=0.29  Score=33.35  Aligned_cols=34  Identities=15%  Similarity=0.412  Sum_probs=22.9

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCCeeeec
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYL   53 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p   53 (98)
                      +..|.++.|.|.+..|-..- ...+|.+|+..|..
T Consensus       119 ~~~g~~~~L~C~~~g~~P~~-~~v~W~k~g~~l~~  152 (214)
T 1ow0_A          119 LALNELVTLTCLARGFSPKD-VLVRWLQGSQELPR  152 (214)
T ss_dssp             TTSSSEEEEEEEEEEESSSC-CEEEEEETTEECCG
T ss_pred             hccCCceEEEEEEeeeECCC-cEEEEEECCEECCC
Confidence            45789999999985432111 25679999866533

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*

Probab=89.83  E-value=0.11  Score=44.12  Aligned_cols=55  Identities=18%  Similarity=0.180  Sum_probs=39.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      +|..|+++.|.|...|    -.+-..|..+...+-.   ...+++....|.|+|++++..|.
T Consensus       544 ~v~~g~~~~L~C~~~s----p~a~v~W~~~~~~l~~---~~~~~~~~~~~~LlI~~v~~~Ds  598 (663)
T 1olz_A          544 FFKHGGTAELKCSQKS----NLARVFWKFQNGVLKA---ESPKYGLMGRKNLLIFNLSEGDS  598 (663)
T ss_dssp             EEETTSCEEECCCCSC----TTCEEEEEESSSBCCC---CSSSBCCTTTTCEEECSCCGGGC
T ss_pred             EEecCCcEEEEccCCC----CCCcEEEEECCeeccc---cCcceEEecCCeEEEEecCcccC
Confidence            7889999999999654    2366699999854422   22345444589999999986653

>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C* 3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C* 3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C* 3sdc_C* ...

Probab=89.78  E-value=0.45  Score=34.23  Aligned_cols=67  Identities=19%  Similarity=0.265  Sum_probs=43.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC------eeeecCc----CCCceEEEc--cC---ccEEEEeEeeecCCcc
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIYLNT----DTGGKYVVL--SS---GDLYVQIRLSITGNLS   82 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd------~~I~p~~----~~dgKY~vl--ps---GeL~Ir~v~~~~~n~~   82 (98)
                      .|..|.+|.|.|.+......   ...|.+..      ..+|-..    ...|||.+.  ++   ..|.|++++.+|.  +
T Consensus        12 ~v~~G~svtL~C~~s~~~~~---~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~Ds--g   86 (229)
T 2q86_A           12 VVRQGENCVLQCNYSVTPDN---HLRWYKQDTGKGLVLLTVLVDQKDKTSNGRYSATLDKDAKHSTLHITATLLDDT--A   86 (229)
T ss_dssp             EEETTCCEEEEEEECCSCCS---CEEEEEECTTCCEEEEEEECSSEEEEEETTEEEEEETTTTEEEEEECSCCGGGC--E
T ss_pred             EEecCCCEEEEEEECCCCCc---EEEEEEECCCCCcEEEEEEcCCCCcccCCCEEEEEcCCCCEEEEEEcccCcccC--c
Confidence            34579999999997654322   46898743      1233221    125789885  32   3799999998875  6


Q ss_pred             eeeeeeh
Q psy5692          83 VKKMKVE   89 (98)
Q Consensus        83 ~~~~~~~   89 (98)
                      +=-|.+.
T Consensus        87 ~Y~C~~~   93 (229)
T 2q86_A           87 TYFCVVG   93 (229)
T ss_dssp             EEEEEES
T ss_pred             cEEEEEE
Confidence            6666664

>1mqk_H Antibody 7E2 FV fragment, heavy chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_C 3ehb_C* 3hb3_C* 1qle_H* 2otu_B 2gsg_B 2otw_B 1qfw_I* 3ab0_B 1i8k_B 1i8i_B 1vhp_A 1bfv_H* 1cfv_H* 2bfv_H* 1dsf_H

Probab=89.72  E-value=0.16  Score=32.68  Aligned_cols=69  Identities=13%  Similarity=0.145  Sum_probs=41.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-e--cC-------cCCCceEEEcc-----CccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-Y--LN-------TDTGGKYVVLS-----SGDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~--p~-------~~~dgKY~vlp-----sGeL~Ir~v~~~   77 (98)
                      .|..|.++.|.|.+.+..... ....|.+..     ..| +  ..       ....+||.+..     +--|.|++++.+
T Consensus        11 ~~~~G~~vtL~C~~s~~~~~~-~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~   89 (127)
T 1mqk_H           11 LVQPGGSLKLSCAASGFTFSS-YTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSE   89 (127)
T ss_dssp             EECTTCCEEEEEEEESSCGGG-SCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             EEcCCCCEEEEEEeCCCccCC-cEEEEEEECCCCCCEEEEEEecCCCcEEcCcccCCCEEEEEeCCCCEEEEEECCCCHH
Confidence            456899999999975432111 246887753     122 2  21       11357998863     235999999887


Q ss_pred             cCCcceeeeeeh
Q psy5692          78 TGNLSVKKMKVE   89 (98)
Q Consensus        78 ~~n~~~~~~~~~   89 (98)
                      |.  ++=-|.+.
T Consensus        90 Ds--g~Y~C~~~   99 (127)
T 1mqk_H           90 DT--AMYYCVRH   99 (127)
T ss_dssp             GC--EEEEEEEE
T ss_pred             HC--EEEEEEEe
Confidence            63  44445443

>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell repertoire, auto-immunity, I system; HET: NAG; 3.50A {Homo sapiens} SCOP: b.1.1.1

Probab=89.63  E-value=0.056  Score=38.13  Aligned_cols=58  Identities=16%  Similarity=0.338  Sum_probs=39.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC------eeeecCc----CCCceEEEc--c---CccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIYLNT----DTGGKYVVL--S---SGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd------~~I~p~~----~~dgKY~vl--p---sGeL~Ir~v~~~~~   79 (98)
                      .|..|.+|.|.|.+....    ....|++..      ..+|-..    ...|||.+.  +   +..|.|++++.+|.
T Consensus        12 ~v~~G~~v~L~C~~s~~~----~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~Ds   84 (207)
T 1ymm_D           12 SIQEGENATMNCSYKTSI----NNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADT   84 (207)
T ss_dssp             CCSSCCCCCBCCBCSSCE----EEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTC
T ss_pred             EEeCCCCEEEEEEecCCC----ceEEEEEECCCCCcEEEEEEcCCCccccCCCEEEEEcCCCCEEEEEECcCCcccC
Confidence            467899999999986443    568998754      1222211    246888885  2   35799999998774

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=89.63  E-value=0.036  Score=38.60  Aligned_cols=58  Identities=16%  Similarity=0.287  Sum_probs=33.2

Q ss_pred             ceeecCeEEEEccCCCCc-cceeEEeEEccCCeee-ec-----CcCCCceEEEccCccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYM-SEYIIVTSWIQDDVNI-YL-----NTDTGGKYVVLSSGDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V-~d~V~V~SW~~Dd~~I-~p-----~~~~dgKY~vlpsGeL~Ir~v~~~~   78 (98)
                      .+..|.+++|.|.+..|- ++ -...+|.+++..+ ..     ....+|.|..  ++.|.|.+++.+|
T Consensus        24 ~v~~G~~v~L~C~~~g~~P~~-p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~--~s~L~I~~~~~~D   88 (231)
T 2w59_A           24 ELYISLDAKLRCLVVNLPSDS-SLSVTWTREKSGNLRPDPMVLQEHFNGTYSA--SSAVPVSTQDWLS   88 (231)
T ss_dssp             HHHTSCCCEEEEEEEEESCCT-TCEEEEECSSSSCCCCCCCEEEECTTSCEEE--EEEEECCHHHHHT
T ss_pred             hcccCCceEEEEEEeCccCCC-CeEEEEEcCCeeccccccccceECCCCcEEE--EEEEEecchhccC
Confidence            356899999999976431 11 0257899887443 11     1124566642  3346666555433

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=89.57  E-value=0.35  Score=33.31  Aligned_cols=60  Identities=20%  Similarity=0.274  Sum_probs=38.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccC---C--e-eeecC----cCCCceEEEccCc---cEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQD---D--V-NIYLN----TDTGGKYVVLSSG---DLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~D---d--~-~I~p~----~~~dgKY~vlpsG---eL~Ir~v~~~~~   79 (98)
                      .|..|.++.|.|.+......+  ...|++.   .  . .++..    ....+||.+..++   .|.|++++.+|.
T Consensus       152 ~v~~G~~v~L~C~~~~~~~~~--~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~  224 (257)
T 3gkz_A          152 SASPGEKVTLTCSASSSVSSS--HLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDA  224 (257)
T ss_dssp             EECTTCCEEEEEEESSCCCGG--GEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeCCCcEEEEEEEccCccce--EEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHC
Confidence            567899999999986543331  4578763   1  2 22211    1124788876543   499999998774

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=89.55  E-value=0.54  Score=28.89  Aligned_cols=53  Identities=8%  Similarity=0.063  Sum_probs=34.6

Q ss_pred             eecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceE----EEcc----CccEEEEeEeeecC
Q psy5692          20 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKY----VVLS----SGDLYVQIRLSITG   79 (98)
Q Consensus        20 irGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY----~vlp----sGeL~Ir~v~~~~~   79 (98)
                      ..|..+.|.|.+..+-.-   ..+|.+++..|.++    +++    ....    +|.|.|++++.+|.
T Consensus        14 ~~~~~~~~~c~v~G~P~P---~i~W~k~g~~l~~~----~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   74 (103)
T 1wwb_X           14 TSDHHWCIPFTVKGNPKP---ALQWFYNGAILNES----KYICTKIHVTNHTEYHGCLQLDNPTHMNN   74 (103)
T ss_dssp             CCCCEEEEEEEEECSSCC---EEEEEETTEEECCC----SSEEEEEEEECSSEEEEEEEEESCCGGGC
T ss_pred             eECcEEEEEEEEEEeCCC---EEEEEECCEECCCC----CcEeEEEEecCCcEEEEEEEECCCCcccC
Confidence            367789999987444333   46899999777542    232    2112    34499999988764

>1kxt_B Immunoglobulin VHH fragment; alpha 8 beta 8, beta barrel, hydrolase, immune system; 2.00A {Camelus dromedarius} SCOP: b.1.1.1

Probab=89.52  E-value=0.31  Score=31.53  Aligned_cols=69  Identities=13%  Similarity=0.201  Sum_probs=40.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----e-eeecCc--------CCCceEEEccC-----ccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----V-NIYLNT--------DTGGKYVVLSS-----GDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~-~I~p~~--------~~dgKY~vlps-----GeL~Ir~v~~~~   78 (98)
                      .|..|.+|.|.|........ -....|.+..     . .++-..        ...+||.+..+     .-|.|++++.+|
T Consensus        11 ~~~~G~~vtL~C~~s~~~~~-~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~D   89 (127)
T 1kxt_B           11 SVQAGGSLRLSCAASGYTFS-SYPMGWYRQAPGKECELSARIFSDGSANYADSVKGRFTISRDNAANTAYLQMDSLKPED   89 (127)
T ss_dssp             ECCTTCCEEEEEEEC--CCS-SSCEEEEEECTTSCEEEEEEECTTSCEEECTTTTTTEEEEECSSSSEEEEEECSCCGGG
T ss_pred             EEeCCCCEEEEeEecCCCcc-ceEEEEEEECCCCCcEEEEEEecCCCeeeCcccCCeEEEEEeCCCCEEEEEECcCCHHH
Confidence            45589999999997633211 1247888742     2 222111        23579988632     359999999876


Q ss_pred             CCcceeeeeeh
Q psy5692          79 GNLSVKKMKVE   89 (98)
Q Consensus        79 ~n~~~~~~~~~   89 (98)
                      .  ++=-|.+.
T Consensus        90 s--g~Y~C~~~   98 (127)
T 1kxt_B           90 T--AVYYCAAG   98 (127)
T ss_dssp             C--EEEEEEEC
T ss_pred             C--EEEEEEEE
Confidence            3  44445443

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=89.46  E-value=0.26  Score=33.54  Aligned_cols=50  Identities=18%  Similarity=0.223  Sum_probs=31.5

Q ss_pred             ecCeEEEEccCCCCccceeEEeEEccCC-eeeecCcCCCceEEEc-cCccEEEEeEeeecC
Q psy5692          21 LGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYVVL-SSGDLYVQIRLSITG   79 (98)
Q Consensus        21 rGNtAVLkC~IPs~V~d~V~V~SW~~Dd-~~I~p~~~~dgKY~vl-psGeL~Ir~v~~~~~   79 (98)
                      .|.++.|.|.+..+-.  .. .+|.++. ..+      .|+.... ..+.|.|++++.+|+
T Consensus        15 ~G~~v~L~C~~~g~P~--p~-i~W~~~~~~~~------~~~~~~~~~~~~L~I~~v~~~D~   66 (202)
T 1vca_A           15 IGDSVSLTCSTTGCES--PF-FSWRTQIDSPL------NGKVTNEGTTSTLTMNPVSFGNE   66 (202)
T ss_dssp             TTSCEEEEEEEESCSS--CE-EEEEETTCCCC------SSEEEEETTEEEEEESSCCGGGC
T ss_pred             CCCcEEEEEeecCCCC--Ce-EEEECCCCCCc------cceEEEcCCccEEEECcCCHHHC
Confidence            8999999999753332  22 6898743 211      2343332 345688888887764

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=89.41  E-value=0.31  Score=32.28  Aligned_cols=66  Identities=9%  Similarity=0.147  Sum_probs=38.1

Q ss_pred             eeecCeE-EEEccC-CCCccceeEEeEEccCCeeeecCcCCCceEEEccC------------ccEEEEeEeeecCCccee
Q psy5692          19 VILGNTA-VLRCQI-PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS------------GDLYVQIRLSITGNLSVK   84 (98)
Q Consensus        19 VirGNtA-VLkC~I-Ps~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlps------------GeL~Ir~v~~~~~n~~~~   84 (98)
                      +..|.++ .|.|.+ .++-..   ..+|.+++..|.+.....+++.+..+            +.|.|. +..+| +...-
T Consensus       130 ~~~g~~~~~l~C~~~~~~p~p---~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~-~~~~d-d~g~Y  204 (231)
T 2pet_A          130 VMEDSAQEIATCNSRNGNPAP---KITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLR-LRKDD-RDASF  204 (231)
T ss_dssp             TTCCSEEEEEEEEEEEEBSCC---EEEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEE-CCGGG-GGCEE
T ss_pred             ecCCCceEEEEEEeECcccCC---EEEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEe-cchhh-CCceE
Confidence            5578877 999998 322222   35899999777554333346655432            456665 33333 23445


Q ss_pred             eeeeh
Q psy5692          85 KMKVE   89 (98)
Q Consensus        85 ~~~~~   89 (98)
                      .|.+.
T Consensus       205 ~C~a~  209 (231)
T 2pet_A          205 HCAAH  209 (231)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            56554

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=89.30  E-value=0.44  Score=33.39  Aligned_cols=62  Identities=15%  Similarity=0.162  Sum_probs=38.9

Q ss_pred             ceeecCeEEEEccCCCCccc-e-eEEeEEcc--CCee----eecC----cCCCceEEEcc---CccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSE-Y-IIVTSWIQ--DDVN----IYLN----TDTGGKYVVLS---SGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d-~-V~V~SW~~--Dd~~----I~p~----~~~dgKY~vlp---sGeL~Ir~v~~~~~   79 (98)
                      .|..|.++.|.|.+...-.. + -....|.+  ++..    ++..    ....+||.+..   ++.|.|++++.+|.
T Consensus       132 ~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds  208 (256)
T 1nqb_A          132 PVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDL  208 (256)
T ss_dssp             EECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEecCCcEEEEeEecCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHC
Confidence            46789999999998654322 0 01458998  4321    2211    12357888754   45699999998774

>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR complex, immune system; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D

Probab=89.25  E-value=0.31  Score=34.34  Aligned_cols=68  Identities=16%  Similarity=0.224  Sum_probs=42.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----e-eeecCc-----CCCceEEEc--cC---ccEEEEeEeeecCCc
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----V-NIYLNT-----DTGGKYVVL--SS---GDLYVQIRLSITGNL   81 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~-~I~p~~-----~~dgKY~vl--ps---GeL~Ir~v~~~~~n~   81 (98)
                      .|..|.+|.|.|.......+  ....|++..     . .+|-..     ...|||.+.  ++   .-|.|++++.+|.  
T Consensus        14 ~v~~G~~vtL~C~~s~~~~~--~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Ds--   89 (211)
T 2ak4_D           14 SVVEKEDVTLDCVYETRDTT--YYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDS--   89 (211)
T ss_dssp             EEETTCCEEECCEEECSCSS--CEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGGC--
T ss_pred             EEecCCCEEEEEEecCCcCc--eeEEEEEECCCCccEEEEEECCCcCccCcCCCEEEEEcCCCCEEEEEECccccccC--
Confidence            35589999999998544333  257898753     1 233211     135899885  32   3699999988764  


Q ss_pred             ceeeeeeh
Q psy5692          82 SVKKMKVE   89 (98)
Q Consensus        82 ~~~~~~~~   89 (98)
                      ++=.|.+.
T Consensus        90 g~Y~C~~~   97 (211)
T 2ak4_D           90 AVYFCALS   97 (211)
T ss_dssp             EEEEEEEE
T ss_pred             ceEEEEEE
Confidence            44445443

>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D 2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D

Probab=89.25  E-value=0.6  Score=33.16  Aligned_cols=66  Identities=9%  Similarity=0.110  Sum_probs=42.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC------eeeecCc----CCCceEEEc--cC---ccEEEEeEeeecCCcc
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIYLNT----DTGGKYVVL--SS---GDLYVQIRLSITGNLS   82 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd------~~I~p~~----~~dgKY~vl--ps---GeL~Ir~v~~~~~n~~   82 (98)
                      .|..|.+|.|.|.+ +.-.   ....|++..      ..+|-..    ...|||.+.  ++   -.|.|++++.+|.  +
T Consensus        12 ~v~~G~~vtL~C~~-~~~~---~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~v~~~Ds--g   85 (215)
T 1oga_D           12 SIQEGENLTVYCNS-SSVF---SSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDT--G   85 (215)
T ss_dssp             EEETTCCEEEEEEC-SSCC---SCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGC--E
T ss_pred             EEecCCCEEEEEEE-cCCC---ceEEEEEeCCCCCcEEEEEEcCCCCcccCCCEEEEEcCCCCEEEEEEccCCcccC--c
Confidence            45689999999997 3322   236898753      2333322    125899886  22   3699999998875  6


Q ss_pred             eeeeeeh
Q psy5692          83 VKKMKVE   89 (98)
Q Consensus        83 ~~~~~~~   89 (98)
                      +-.|.+.
T Consensus        86 ~Y~C~~~   92 (215)
T 1oga_D           86 LYLCAGA   92 (215)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEe
Confidence            6666654

>3cx5_J Heavy chain (VH) of FV-fragment; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Mus musculus} SCOP: b.1.1.1 PDB: 1kb9_J* 1kyo_J* 1p84_J* 2ibz_X* 1ezv_X* 3cxh_J*

Probab=89.17  E-value=0.098  Score=33.75  Aligned_cols=68  Identities=12%  Similarity=0.058  Sum_probs=40.5

Q ss_pred             ceeecCeEEEEccCCCCc-cceeEEeEEccCC------eeeecC--------cCCCceEEEcc---C--ccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYM-SEYIIVTSWIQDD------VNIYLN--------TDTGGKYVVLS---S--GDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V-~d~V~V~SW~~Dd------~~I~p~--------~~~dgKY~vlp---s--GeL~Ir~v~~~   77 (98)
                      .|..|.+++|.|.+.+.. .++ ....|.+..      ..++-.        ....+||.+..   .  .-|.|++++.+
T Consensus        11 ~~~~G~~vtL~C~~s~~~~~~~-~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~   89 (127)
T 3cx5_J           11 LVQPSQSLSLTCSVTGYSITSG-YYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTE   89 (127)
T ss_dssp             EECTTSCEEEEEEEESSCTTTS-SEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGG
T ss_pred             EEcCCCCEEEEEEEeCcccCCC-cEEEEEEECCCCCcEEEEEEeCCCCeeECcccCCcEEEEEeCCCCEEEEEECCCCHH
Confidence            455899999999975432 231 347887742      122211        11247887752   2  36999999987


Q ss_pred             cCCcceeeeee
Q psy5692          78 TGNLSVKKMKV   88 (98)
Q Consensus        78 ~~n~~~~~~~~   88 (98)
                      |.  ++=-|.+
T Consensus        90 Ds--g~Y~C~~   98 (127)
T 3cx5_J           90 DT--ATYYCAR   98 (127)
T ss_dssp             GC--EEEEEEE
T ss_pred             HC--EEEEEEE
Confidence            63  4444444

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=89.12  E-value=0.19  Score=35.11  Aligned_cols=65  Identities=12%  Similarity=0.228  Sum_probs=36.1

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCCeee----ecCcCCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI----YLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I----~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      +..|.++.|.|.+..|-..-+ ..+|.+++..+    ++....+|+|.+.  +.|.|..++..|   ..-.|.++
T Consensus       136 ~~~g~~v~L~C~~~g~~P~~~-~v~W~~~~~~~~~~~~~~~~~~g~~~~~--s~L~i~~~~~~d---g~ytC~v~  204 (253)
T 3liz_H          136 AQTNSMVTLGCLVKGYFPEPV-TVTWNSGSLSSGVHTFPAVLQSDLYTLS--SSVTVPSSTWPS---ETVTCNVA  204 (253)
T ss_dssp             ---CCEEEEEEEEEEEBSSCC-EEEEGGGTBCTTEEECCCEEETTEEEEE--EEEEEETTSTTT---SCCEEEEE
T ss_pred             cCCCCcEEEEEEEeeEeCCCe-EEEEEeCCeecceEeCCccccCCeEEEE--EEEEEcHHHCCC---ceEEEEEE
Confidence            567999999999875333322 45899987421    1111113788764  567776665433   23345544

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=89.10  E-value=0.36  Score=36.27  Aligned_cols=59  Identities=15%  Similarity=0.267  Sum_probs=35.7

Q ss_pred             eeecCeEEEEccCCCCc-cceeEEeEEccCCeeee------cCcCCCceEEEccCccEEEEeEeeecC
Q psy5692          19 VILGNTAVLRCQIPSYM-SEYIIVTSWIQDDVNIY------LNTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V-~d~V~V~SW~~Dd~~I~------p~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      +..|.+|.|.|.+..+- ..-....+|.+++..+.      +....+|+|..  +..|.|..++.+|+
T Consensus       180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~--~s~L~I~~~~~~D~  245 (376)
T 2aty_A          180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRS--VSELPIMHQDWLNG  245 (376)
T ss_pred             eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEE--EEEEEechHhccCC
Confidence            67899999999986441 01123589999984331      11224566654  33577766665553

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=89.06  E-value=0.2  Score=36.42  Aligned_cols=55  Identities=18%  Similarity=0.225  Sum_probs=36.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGN   80 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n   80 (98)
                      .|..|.++.|.|.. +.-.. ....+|...+..+      +..+.....+.|.|.|++.+|+-
T Consensus        18 ~v~~G~sv~L~C~a-~~p~P-~~~i~W~~~~~~l------~~~~~~~~~~~L~I~~v~~~d~G   72 (210)
T 1gsm_A           18 AVALGASRQLTCRL-ACADR-GASVQWRGLDTSL------GAVQSDTGRSVLTVRNASLSAAG   72 (210)
T ss_dssp             EEETTCCEEEEEEE-CCSST-TCEEEEESSTTTT------CCEEEESSEEEEEECSCCGGGCE
T ss_pred             EEeCCCCEEEEEEC-CCCCC-CcceEEeeccccc------CcEEecCCccEEEECccCcccCc
Confidence            67899999999997 33222 2378899866332      22333334567899999887764

>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=88.97  E-value=0.32  Score=31.15  Aligned_cols=79  Identities=14%  Similarity=0.176  Sum_probs=45.8

Q ss_pred             cceeeeceEEEEeeeeceeecCeEEEEccCCCC-ccceeEEeEEccCC------eeeecCc----CCCceEEEc--c-Cc
Q psy5692           2 LPVVKQKYEINVNYEHNVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD------VNIYLNT----DTGGKYVVL--S-SG   67 (98)
Q Consensus         2 rAVV~Q~Yev~V~d~~~VirGNtAVLkC~IPs~-V~d~V~V~SW~~Dd------~~I~p~~----~~dgKY~vl--p-sG   67 (98)
                      ||.|.+|=.+      .|..|.+++|.|...+. .... ....|.+..      ..++-..    ...||+.+.  + .|
T Consensus         1 ~~~v~~p~~v------~~~~G~~vtL~C~~s~~~~~~~-~~v~Wyrq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~   73 (117)
T 1xed_A            1 KSPIFGPEEV------NSVEGNSVSITCYYPPTSVNRH-TRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENG   73 (117)
T ss_dssp             -CCSBCCSEE------EEETTCCEEEEEECCCCHHHHH-SCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTT
T ss_pred             CCceeCCCeE------EEecCCCEEEEeEecCCcCCCC-ceEEEEEeCCCCCCEEEEEeCCeEcceEcCCEEEEecCCCC
Confidence            4566666332      34489999999998643 1111 236888764      1233221    246888875  2 23


Q ss_pred             --cEEEEeEeeecCCcceeeeeeh
Q psy5692          68 --DLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        68 --eL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                        -|.|++++.+|.  +.=-|.+.
T Consensus        74 ~~sL~I~~l~~~Ds--G~Y~C~v~   95 (117)
T 1xed_A           74 TFVVNIAQLSQDDS--GRYKCGLG   95 (117)
T ss_dssp             EEEEEECSCCGGGC--EEEEEEES
T ss_pred             EEEEEECCCChHHC--EEEEEEEE
Confidence              488999988773  44445443

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=88.91  E-value=0.45  Score=29.42  Aligned_cols=50  Identities=10%  Similarity=0.082  Sum_probs=33.2

Q ss_pred             CeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEc-------cCccEEEEeEeeecC
Q psy5692          23 NTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL-------SSGDLYVQIRLSITG   79 (98)
Q Consensus        23 NtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vl-------psGeL~Ir~v~~~~~   79 (98)
                      ..+.|.|.+...-.-   ...|.+++..|..    +.++.+.       .+|.|.|++++..|.
T Consensus        21 ~~~~l~C~~~g~P~p---~i~W~k~g~~l~~----~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   77 (118)
T 1wwc_A           21 LEHCIEFVVRGNPPP---TLHWLHNGQPLRE----SKIIHVEYYQEGEISEGCLLFNKPTHYNN   77 (118)
T ss_dssp             CEEEEEEEEECSSCC---EEEEEETTEECCC----SSSEEEEEEECSSEEEEEEEEESCCGGGC
T ss_pred             cceEEEEEeeeeCCC---eEEEEECCEECCC----CCceeEEEeccCccccEEEEECCCChhcC
Confidence            557899987543332   4689999977644    2333332       467899999887764

>1rjc_A 1D2L19, camelid heavy chain antibody; beta sandwich, immunoglobulin fold, protein-protein hetero C alpha-beta orthogonal bundle, immune system-hydrolase compl; 1.40A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 1ri8_A 1xfp_A 1jtt_A 2x6m_A 1zmy_A 1f2x_K

Probab=88.87  E-value=0.51  Score=31.25  Aligned_cols=69  Identities=12%  Similarity=0.142  Sum_probs=40.7

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----e-eeecC---------cCCCceEEEcc---C--ccEEEEeEeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----V-NIYLN---------TDTGGKYVVLS---S--GDLYVQIRLSI   77 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~-~I~p~---------~~~dgKY~vlp---s--GeL~Ir~v~~~   77 (98)
                      .|..|.++.|.|...++... -....|.+..     . .++-.         ....+||.+..   .  --|.|++++.+
T Consensus        11 ~v~~G~~vtL~C~~s~~~~~-~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~   89 (137)
T 1rjc_A           11 SVQAGQSLRLSCATSGATSS-SNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKPE   89 (137)
T ss_dssp             EECTTCCEEEEEECC-CTTT-CSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCGG
T ss_pred             EEecCCCEEEEEEecCCcCC-CcEEEEEEECCCCCCEEEEEEECCCCceecCcccCCcEEEEEcCCCCEEEEEECCCCHH
Confidence            45589999999998643212 1346788743     1 22211         11357998863   2  25999999877


Q ss_pred             cCCcceeeeeeh
Q psy5692          78 TGNLSVKKMKVE   89 (98)
Q Consensus        78 ~~n~~~~~~~~~   89 (98)
                      |.  ++=-|.+.
T Consensus        90 Ds--g~Y~C~~~   99 (137)
T 1rjc_A           90 DT--AMYYCAAD   99 (137)
T ss_dssp             GC--EEEEEEEC
T ss_pred             HC--EEEEEEEE
Confidence            63  44455543

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=88.80  E-value=0.33  Score=33.60  Aligned_cols=67  Identities=12%  Similarity=0.094  Sum_probs=40.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eeeec-C----cCCCceEEEcc-----CccEEEEeEeeecCCcc
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYL-N----TDTGGKYVVLS-----SGDLYVQIRLSITGNLS   82 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I~p-~----~~~dgKY~vlp-----sGeL~Ir~v~~~~~n~~   82 (98)
                      .|..|.++.|.|.......  .....|.+.+     ..++. .    ....+||.+..     ++.|.|++++.+|.  .
T Consensus       147 ~v~~G~~v~L~C~~~~~~~--~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~Ds--G  222 (259)
T 3omz_A          147 SMPVRKAVTLNCLYETSWW--SYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDS--A  222 (259)
T ss_dssp             EEETTCCEEECCEEECCCS--SCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGC--S
T ss_pred             EEcCCCCEEEEEECCCccC--CceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHC--E
Confidence            4678999999997643222  2346788742     11211 0    11257898873     24599999998774  3


Q ss_pred             eeeeee
Q psy5692          83 VKKMKV   88 (98)
Q Consensus        83 ~~~~~~   88 (98)
                      .--|.+
T Consensus       223 ~Y~C~~  228 (259)
T 3omz_A          223 KYFCAL  228 (259)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            334444

>1i3u_A Antibody VHH LAMA domain; VHH fragment, immune system; HET: RR1; 1.95A {Lama glama} SCOP: b.1.1.1 PDB: 1i3v_A

Probab=88.73  E-value=0.29  Score=31.36  Aligned_cols=69  Identities=14%  Similarity=0.221  Sum_probs=41.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----ee-eec------C--------cCCCceEEEcc--C---ccEEEE
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VN-IYL------N--------TDTGGKYVVLS--S---GDLYVQ   72 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~-I~p------~--------~~~dgKY~vlp--s---GeL~Ir   72 (98)
                      .|..|.+|+|.|.+.+.... -....|.+..     .. ++-      +        ....+||.+..  +   .-|.|+
T Consensus        11 ~v~~G~~vtL~C~~s~~~~~-~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~   89 (127)
T 1i3u_A           11 LVQAGDSLKLSCEASGDSIG-TYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMN   89 (127)
T ss_dssp             ECCTTCCEEEEEEEESSCGG-GSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEEC
T ss_pred             EEeCCCcEEEEEEecCCCcC-CcEEEEEEECCCCCcEEEEEEEeccccCCCcceeeCcccCCeEEEEEcCCCCEEEEEEC
Confidence            45589999999997543212 1347887642     12 221      0        11357998863  2   269999


Q ss_pred             eEeeecCCcceeeeeeh
Q psy5692          73 IRLSITGNLSVKKMKVE   89 (98)
Q Consensus        73 ~v~~~~~n~~~~~~~~~   89 (98)
                      +++.+|.  ++=-|.+.
T Consensus        90 ~~~~~Ds--g~Y~C~~~  104 (127)
T 1i3u_A           90 SLKPEDT--AVYYCAAK  104 (127)
T ss_dssp             SCCGGGC--EEEEEEEE
T ss_pred             CCChhhC--EEEEEEEE
Confidence            9998774  44445443

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=88.71  E-value=0.27  Score=36.97  Aligned_cols=59  Identities=22%  Similarity=0.337  Sum_probs=36.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeee----ecC-cCCCceEEEccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI----YLN-TDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I----~p~-~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      .+..|.++.|.|.+..+--. ....+|.+++..+    ++. .+.+|+|.+.  +.|.|.+++..||
T Consensus       143 ~~~~g~~v~L~C~~~g~~P~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~--s~L~i~~~~~~dG  206 (457)
T 1hzh_H          143 KSTSGGTAALGCLVKDYFPE-PVTVSWNSGALTSGVHTFPAVLQSSGLYSLS--SVVTVPSSSLGTQ  206 (457)
T ss_dssp             CCCTTCCEEEEEEEESBBSC-CCEEEETTTTBCTTEEEEEEEECTTSCEEEE--EEEEECSGGGGTS
T ss_pred             cccCCCcEEEEEEEeEEeCC-CeEEEEEeCCEeccceEcCceECCCCCEEEE--EEEEecccccCCc
Confidence            35789999999998643111 1346899998432    221 2356777553  4688877776553

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=88.60  E-value=0.15  Score=34.57  Aligned_cols=60  Identities=7%  Similarity=0.077  Sum_probs=35.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-eeeecCcCCCceEEEc---------cCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYVVL---------SSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-~~I~p~~~~dgKY~vl---------psGeL~Ir~v~~~~~   79 (98)
                      .|..|.+|+|.|.+...--.-.-...|+++. ..+-.  ..+.++.+.         -++.|.|+++...|.
T Consensus        18 ~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Da   87 (126)
T 2dav_A           18 TVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLAS--KAGKHLQLKETFERHSRVYTFEMQIIKAKDNFA   87 (126)
T ss_dssp             EEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHH--HTTSSEEEEEEEETTTTEEEEEEEECSCCTTSC
T ss_pred             EEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCC--CCCceEEEccccccccccceEEEEEccCCcccC
Confidence            5678999999998631000012356799975 22211  113444442         147899999988775

>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET: NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G* 3b9k_A* 2atp_A* 2arj_R

Probab=88.57  E-value=0.42  Score=31.32  Aligned_cols=59  Identities=15%  Similarity=0.275  Sum_probs=37.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC---------eeeecCc---------C--CCceEEE-ccCc---cEEEEe
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD---------VNIYLNT---------D--TGGKYVV-LSSG---DLYVQI   73 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd---------~~I~p~~---------~--~dgKY~v-lpsG---eL~Ir~   73 (98)
                      .|-.|.++.|.|.+..+..   ....|++-.         ..+|-..         +  ..+||.+ ..++   -|.|.+
T Consensus        15 ~v~~G~~vtL~C~~s~~~~---~~v~WyrQ~~g~~l~~p~~l~~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~~L~I~~   91 (128)
T 1nez_G           15 DAELGQKVDLVCEVLGSVS---QGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLNK   91 (128)
T ss_dssp             EECTTCCEEEEEEEESCCS---SCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTEEEEEESS
T ss_pred             EEcCCCCEEEEEEeCccCC---CcEEEEEeCCCCCCCCcEEEEEEecccCCceeeccccCCCcEEEEeCCCCEEEEEECC
Confidence            3558999999999754432   237898742         1223211         1  1378888 5444   589999


Q ss_pred             EeeecC
Q psy5692          74 RLSITG   79 (98)
Q Consensus        74 v~~~~~   79 (98)
                      ++.+|.
T Consensus        92 ~~~~Ds   97 (128)
T 1nez_G           92 FSKENE   97 (128)
T ss_dssp             CCGGGC
T ss_pred             CCHHHC
Confidence            998764

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=88.43  E-value=0.29  Score=33.58  Aligned_cols=55  Identities=16%  Similarity=0.136  Sum_probs=32.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeee-ecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI-YLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I-~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .|..|.++.|.|.+..       -.+|..+.... .....       ..++.|.|.+++..|.  ..-.|.+
T Consensus        15 ~v~~G~~v~L~C~~~~-------~v~W~~~~~~~~~~~~~-------~~~~~L~i~~~~~~d~--G~Y~C~~   70 (289)
T 3ejj_X           15 VVEPGETVTLRCVSNG-------SVEWDGPISPYWTLDPE-------SPGSTLTTRNATFKNT--GTYRCTE   70 (289)
T ss_dssp             EECTTCCEEEEEECSS-------CCEEECSCSSSSEECCC-------SSCCEEEESSCCGGGC--EEEEEEC
T ss_pred             EECCCCCEEEEEEeCC-------cEEEccCCCceEEEecc-------CCccEEEEeeeccccC--EEEEEEE
Confidence            4668999999999875       27899775211 11111       1236677777776653  3344543

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=88.36  E-value=0.13  Score=34.09  Aligned_cols=45  Identities=20%  Similarity=0.434  Sum_probs=25.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCc------CCCceEEE
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT------DTGGKYVV   63 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~------~~dgKY~v   63 (98)
                      .++.|.++.|.|.+..+-..- ...+|.+++..|.+..      ..+|.|.+
T Consensus       132 ~~~~~~~v~L~C~~~g~~p~~-~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~  182 (218)
T 3s96_B          132 EELKENKATLVCLISNFSPSG-VTVAWKANGTPITQGVDTSNPTKEGNKFMA  182 (218)
T ss_dssp             HHHHTTEEEEEEEEEEEBSSC-CEEEEEETTEEC--------------CEEE
T ss_pred             ccccCCcEEEEEEECcccCCC-eEEEEEECCEECcCceecCcccccCCcEEE
Confidence            346789999999975322121 2468999987664411      12666765

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=88.32  E-value=0.28  Score=33.49  Aligned_cols=68  Identities=19%  Similarity=0.310  Sum_probs=37.6

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEcc-CCeeee-----cCcCCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQ-DDVNIY-----LNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~-Dd~~I~-----p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      +..|.++.|.|.+..+-.. -...+|.+ |+..|.     |....+|+|.+.  ..|.|............-.|.++
T Consensus       138 ~~~g~~v~L~C~~~g~~P~-p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~--s~L~i~~~~~~~~d~g~y~C~v~  211 (223)
T 1dee_B          138 SNPSSTVAVGCLAQDFLPD-SITFSWKYKNNSDISSTRGFPSVLRGGKYAAT--SQVLLPSKDVAQGTNEHVVCKVQ  211 (223)
T ss_dssp             CCSSSEEEEEEEEEEEBSS-CCEEEEEETTSCBCSCEEECCCEEETTEEEEE--EEEEEECTTTTSTTCCEEEEEEE
T ss_pred             cCCCCcEEEEEEEEEEeCC-CeEEEeEccCCCccceeEECCccccCCeEEEE--EEEEEcHHHhccCCCCEEEEEEE
Confidence            4589999999998633111 12578999 665442     222235788763  45666433210022344566654

>1yc7_A Anti-VSG immunoglobulin heavy chain variable domain caban33; antibody, camel antibody, immune system; 1.60A {Camelus dromedarius} PDB: 1yc8_A 1yzz_A

Probab=88.31  E-value=0.52  Score=30.47  Aligned_cols=68  Identities=12%  Similarity=0.215  Sum_probs=40.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-ecCc--------CCCceEEEcc-----CccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLNT--------DTGGKYVVLS-----SGDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~p~~--------~~dgKY~vlp-----sGeL~Ir~v~~~~   78 (98)
                      .|..|.++.|.|.+.++-.. -....|.+..     ..| +-..        ...|||.+.-     +.-|.|++++.+|
T Consensus        11 ~~~~G~~vtL~C~~s~~~~~-~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~D   89 (124)
T 1yc7_A           11 SVQAGGSLRLSCAVSGSTYS-PCTTGWYRQAPGKEREWVSSISSPGTIYYQDSVKGRFTISRDNAKNTVYLQMNSLQRED   89 (124)
T ss_dssp             EECTTCCEEEEEEEESCCSS-CEEEEEEEECTTSCEEEEEEECSTTCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EEecCCCEEEEEEEeCCCcC-CCEEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCHHH
Confidence            45589999999997543212 2457898743     222 1111        1247898863     2358999999877


Q ss_pred             CCcceeeeee
Q psy5692          79 GNLSVKKMKV   88 (98)
Q Consensus        79 ~n~~~~~~~~   88 (98)
                      .  ++=-|.+
T Consensus        90 s--g~Y~C~~   97 (124)
T 1yc7_A           90 T--GMYYCQI   97 (124)
T ss_dssp             C--EEEEEEE
T ss_pred             C--EEEEEEE
Confidence            4  4444444

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=88.31  E-value=0.14  Score=34.48  Aligned_cols=64  Identities=13%  Similarity=0.179  Sum_probs=37.6

Q ss_pred             eeecCeEEEEccCCCC-ccceeEEeEEccCCeeee----cCcCCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          19 VILGNTAVLRCQIPSY-MSEYIIVTSWIQDDVNIY----LNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        19 VirGNtAVLkC~IPs~-V~d~V~V~SW~~Dd~~I~----p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      +..|.++.|.|.+..+ -+.  ...+|.+++..+.    +....+|.|.+  ++.|.|.+++..|   ..-.|.+.
T Consensus       139 ~~~g~~v~L~C~~~g~~P~p--~~v~W~~~g~~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~d---g~y~C~a~  207 (222)
T 1q9r_B          139 AQTNSMVTLGCLVKGYFPEP--VTVTWNSGSLSSGVHTFPAVLQSDLYTL--SSSVTVPSSTWPS---ETVTCNVA  207 (222)
T ss_dssp             CCCSSEEEEEEEEEEEBSSC--CEEEEGGGTBCTTEEEEEEEEETTEEEE--EEEEEEETTTTTT---SCCEEEEE
T ss_pred             ccCCCcEEEEEEEccEECCC--CEEEEecCCeEcceEeccccccCCcEEE--EEEEEECchhcCC---CeEEEEEE
Confidence            5579999999998633 221  2568999974331    11112446655  3467777665444   33456554

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A*

Probab=88.15  E-value=0.47  Score=35.41  Aligned_cols=36  Identities=22%  Similarity=0.534  Sum_probs=26.3

Q ss_pred             ceEEEEeeeeceeecCeEEEEccCCCCccceeEEeEEccCCe
Q psy5692           8 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDV   49 (98)
Q Consensus         8 ~Yev~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~   49 (98)
                      .|-+++.-. -+++|.+|+|.|.+.+  .+   -..|..++.
T Consensus         8 ~~v~~~~~~-~~~~G~~v~l~C~~~~--~~---~i~W~~~~~   43 (306)
T 3d85_D            8 VYVVELDWY-PDAPGEMVVLTCDTPE--ED---GITWTLDQS   43 (306)
T ss_dssp             EEEEEEECC-SSCCCEEEEEECSSSC--CS---SCEEEETTC
T ss_pred             cEEEeCCcc-cCccCCcEEEECCCCC--CC---cCEEEECCc
Confidence            356677654 6889999999999762  22   467998874

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=88.09  E-value=0.27  Score=33.76  Aligned_cols=54  Identities=19%  Similarity=0.133  Sum_probs=34.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc---CccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS---SGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp---sGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .|..|.++.|.|.+...       .+|..+..         .++.+..   ++.|.|++++..|.  ..-.|.+.
T Consensus        15 ~v~~G~~v~L~C~~~~~-------v~W~~~~~---------~~~~~~~~~~~~~L~i~~~~~~d~--G~Y~C~~~   71 (292)
T 4dkd_C           15 VVKPGATVTLRCVGNGS-------VEWDGPPS---------PHWTLYSDGSSSILSTNNATFQNT--GTYRCTEP   71 (292)
T ss_dssp             EECTTCCEEEEEECSSC-------CCBCCCCC---------SSCEECCBTTEEEEEESSCCGGGC--SCEEECCC
T ss_pred             EEcCCCcEEEEEcCCCc-------eEEccCCC---------CceEEeccCceEEEEEcccccccC--EEEEEEEc
Confidence            56789999999998753       78986541         1222322   34788888777663  33455443

>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus}

Probab=88.04  E-value=0.58  Score=32.92  Aligned_cols=59  Identities=15%  Similarity=0.334  Sum_probs=37.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC---------eeeecCc---------C--CCceEEEccCcc----EEEEe
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD---------VNIYLNT---------D--TGGKYVVLSSGD----LYVQI   73 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd---------~~I~p~~---------~--~dgKY~vlpsGe----L~Ir~   73 (98)
                      .|-.|-++.|.|.+.++-..   ...|++-.         ..||-..         .  ..+||.+.-++.    |.|++
T Consensus        20 ~v~~G~sVtL~C~~s~~~~~---~v~WyrQ~pg~~~~~p~~Li~~~~~~~~~~y~~~~~~~~Rfs~s~~~~~~~sL~I~~   96 (166)
T 3dmm_C           20 DAELGQKVDLVCEVLGSVSQ---GCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLNK   96 (166)
T ss_dssp             CCCTTCCEEEEEEEESSSCC---EEEEEEEETTCSCCSCEEEEEEESSSCCEEECGGGSSCCSEEEECSTTTEEEEEESS
T ss_pred             EEcCCCCEEEEEEEeCCCCc---eEEEEEECCCCCCCCcEEEEEEeCCCCceeeccccccccceEEEcCCCCEEEEEECC
Confidence            46689999999997533222   45787532         2233211         1  267898864332    99999


Q ss_pred             EeeecC
Q psy5692          74 RLSITG   79 (98)
Q Consensus        74 v~~~~~   79 (98)
                      ++.+|.
T Consensus        97 vq~eDs  102 (166)
T 3dmm_C           97 FSKENE  102 (166)
T ss_dssp             CCTTTC
T ss_pred             CChhhC
Confidence            998774

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=87.95  E-value=0.24  Score=34.84  Aligned_cols=52  Identities=12%  Similarity=0.078  Sum_probs=34.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEE-eEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQ-IRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir-~v~~~~   78 (98)
                      .+..|.++.|.|.+..+-..  ...+|.+++..+.+    +   ....+|.|.|. ++..+|
T Consensus       243 ~~~~g~~~~l~C~~~g~p~p--~~i~W~~~~~~~~~----~---~~~~~~~L~i~~~v~~~d  295 (331)
T 3u83_A          243 WYLQRMDVKLTCKADANPPA--TEYHWTTLNGSLPK----G---VEAQNRTLFFKGPINYSL  295 (331)
T ss_dssp             CBTTCCCEEEEEEEEEESCC--CEEEEEETTBSCCT----T---EEEETTEEEECSCCCGGG
T ss_pred             eEeCCCeEEEEEeCcCCCCC--CEEEEEECCCcccc----c---ceecCcEEEEeCCCcccc
Confidence            47789999999998433222  23689999865532    1   22356777777 676665

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=87.80  E-value=0.35  Score=33.62  Aligned_cols=58  Identities=17%  Similarity=0.212  Sum_probs=36.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----eeeecC--------cCCCceEEEcc----CccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYLN--------TDTGGKYVVLS----SGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I~p~--------~~~dgKY~vlp----sGeL~Ir~v~~~~~   79 (98)
                      .+..|.++.|.|.+...    .....|.+..     ..++..        ....+||.+..    ++.|.|.+++.+|.
T Consensus       148 ~v~~G~~v~L~C~~~~~----~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~Ds  222 (256)
T 3tf7_C          148 VTVTGENVTLSCRQTNS----HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQT  222 (256)
T ss_dssp             EEETTCCEEECEEECSC----CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGC
T ss_pred             EEeCCCcEEEEEEcCCC----ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHC
Confidence            34589999999998643    2246788732     222110        01246777653    44799999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	98
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	98.09
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	97.91
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	97.81
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	97.7
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	97.57
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	97.53
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	97.42
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	97.38
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	97.32
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.29
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	97.25
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	97.24
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.22
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	97.11
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	97.1
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	97.06
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.02
d1pd6a_	94	Cardiac myosin binding protein C, different domain	96.93
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	96.82
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	96.81
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	96.81
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	96.67
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	96.6
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	96.57
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	96.55
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	96.55
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	96.49
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	96.45
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	96.39
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	96.34
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	96.24
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	96.1
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	96.1
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	96.08
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	96.08
d2avga1	110	Cardiac myosin binding protein C, different domain	95.99
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	95.98
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	95.9
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	95.81
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	95.77
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	95.68
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	95.66
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	95.59
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	95.42
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	95.29
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	95.26
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	95.25
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	95.2
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	95.06
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	95.0
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	95.0
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	94.8
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	94.74
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	94.63
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	94.6
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	94.51
d1gxea_	130	Cardiac myosin binding protein C, different domain	94.48
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	94.4
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	94.25
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	93.96
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	93.96
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	93.84
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	93.6
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	93.41
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	92.94
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	92.6
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	91.52
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	91.12
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	90.69
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	90.4
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	89.96
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	89.9
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	89.9
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	89.85
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	89.55
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	89.53
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	88.97
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	88.81
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	88.42
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	88.38
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	88.31
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	88.19
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	87.94
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	87.79
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	87.74
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	87.5
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	87.04
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	86.88
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	86.83
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	86.74
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	86.66
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	86.33
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	86.23
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	85.96
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	85.93
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	85.69
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	85.65
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	85.18
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	85.09
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	84.85
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	84.54
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	84.29
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	84.13
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	84.05
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	83.96
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	83.86
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	83.6
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	83.33
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	82.39
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	81.87
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	80.88
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	80.78
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	80.76
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	80.19
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	80.09
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	80.07

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=7.8e-07  Score=55.46  Aligned_cols=63  Identities=19%  Similarity=0.169  Sum_probs=48.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .+-.|.+|.|.|.+++   +.. -..|..++..|.+   .+.+|.+.++|.|.|++++.+|.  ..-.|..+
T Consensus         8 ~~~~G~~~~l~C~~~g---~~~-~v~W~~~g~~l~~---~~~~~~~~~~~~L~I~~v~~~Ds--G~Y~C~A~   70 (92)
T d1olza1           8 FFKHGGTAELKCSQKS---NLA-RVFWKFQNGVLKA---ESPKYGLMGRKNLLIFNLSEGDS--GVYQCLSE   70 (92)
T ss_dssp             EEETTSCEEECCCCSC---TTC-EEEEEESSSBCCC---CSSSBCCTTTTCEEECSCCGGGC--EEEEEEEE
T ss_pred             eEeCCCEEEEEEEeec---cCC-ceeeecCccccee---eeeeeecceeeEEEECCCCHHHC--cEEEEEEE
Confidence            7889999999999875   222 4478888866645   36799999999999999998884  45555543

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.91  E-value=1.7e-05  Score=50.61  Aligned_cols=59  Identities=19%  Similarity=0.289  Sum_probs=43.6

Q ss_pred             ceeecCeEEEEcc-CCCCccceeEEeEEccCC-----eeee----------cCcCCCceEEEccCccEEEEeEeeecCC
Q psy5692          18 NVILGNTAVLRCQ-IPSYMSEYIIVTSWIQDD-----VNIY----------LNTDTGGKYVVLSSGDLYVQIRLSITGN   80 (98)
Q Consensus        18 ~VirGNtAVLkC~-IPs~V~d~V~V~SW~~Dd-----~~I~----------p~~~~dgKY~vlpsGeL~Ir~v~~~~~n   80 (98)
                      .|..|.+++|.|+ .|.    -+...+|.+++     ..|.          +.....||..++++|.|.|+|++.+|.=
T Consensus        10 ~v~~G~~V~L~c~~~p~----~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G   84 (107)
T d1l6za1          10 QVAEDNNVLLLVHNLPL----ALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMG   84 (107)
T ss_dssp             SCCTTCCEEEEEESCCT----TCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCE
T ss_pred             cccCCCCEEEEecCCCC----CceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCE
Confidence            5789999999998 453    34456887643     1221          2234578999999999999999999864

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.81  E-value=6.1e-06  Score=51.70  Aligned_cols=67  Identities=13%  Similarity=0.338  Sum_probs=47.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .|..|.+|+|.|.+++....  -..+|.+++..+.. .....++.+.++|.|+|.+++.+|.  ..-.|.++
T Consensus        15 ~v~eG~~~~l~C~~~~~~p~--~~v~W~k~g~~~~~-~~~~~~~~~~~~~~L~I~~v~~~D~--G~Y~C~a~   81 (105)
T d1cs6a2          15 KITEGWGVMFTCSPPPHYPA--LSYRWLLNEFPNFI-PADGRRFVSQTTGNLYIAKTEASDL--GNYSCFAT   81 (105)
T ss_dssp             EEETTSCEEECCCCCSEESC--CEEEEEESSTTCBC-CCCSSEEECTTTCCEEESSCCGGGC--EEEEEEEE
T ss_pred             EEeCCCeEEEEEEccCCCCC--CEEEEEEeeccccc-cccceeeeecCCCEEeecccccccC--cEEEEEEE
Confidence            57789999999997543332  24679999844422 2235567778999999999998874  56667653

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.70  E-value=1.3e-05  Score=48.86  Aligned_cols=68  Identities=10%  Similarity=0.125  Sum_probs=49.5

Q ss_pred             EEEeeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc-CccEEEEeEeeecCCcceeeeeeh
Q psy5692          11 INVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS-SGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        11 v~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp-sGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      +++.+. .|..|.+++|.|.+...    -.-..|.+++..|..    ++++.+.. .+.|.|++++.+|.  ..-.|.+.
T Consensus         8 i~~~~~-~v~~g~~v~l~C~~~~~----~~~v~W~~~~~~l~~----~~~~~~~~~~~~L~I~~v~~~d~--G~Y~C~a~   76 (96)
T d1l6za2           8 LQVTNT-TVKELDSVTLTCLSNDI----GANIQWLFNSQSLQL----TERMTLSQNNSILRIDPIKREDA--GEYQCEIS   76 (96)
T ss_dssp             EECSCS-EECTTSCEEEEECCCCS----SCEEEEEETTEECCC----CTTEEEETTTTEEEECSCCGGGC--EEEEEEEE
T ss_pred             EEcCce-EEeCCCeEEEEEccCCC----CCCEEEEEeeeeccc----ccceeccCCceEEEEeccchhhc--eEEEEEEE
Confidence            456676 78999999999997532    234589999977744    56777764 67899999987664  46666654

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.57  E-value=5.9e-05  Score=47.04  Aligned_cols=61  Identities=16%  Similarity=0.137  Sum_probs=44.0

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeee---ecC---cCCCceEEEccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI---YLN---TDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I---~p~---~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      +.+.|.+++|.|.-.+-- +-+....|.+++..|   .+.   ...++++.+.++|.|.|+|++.+|.
T Consensus         6 ~G~~G~sV~L~~~~~~~~-~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~Ds   72 (98)
T d1hnga1           6 WGALGHGINLNIPNFQMT-DDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDS   72 (98)
T ss_dssp             EEETTSCEEECCTTCCCC-TTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGC
T ss_pred             EEecCCCEEEECCCCCCc-cchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHC
Confidence            456799999999632222 235667799888444   222   2357899999999999999998875

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.53  E-value=2.3e-05  Score=47.79  Aligned_cols=64  Identities=17%  Similarity=0.295  Sum_probs=49.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .|..|.+|.|.|.+...-.-   ...|++++..|.+.  ...++.++++|.|.|.+++.+|.  ..-.|..
T Consensus        12 ~v~~G~~~~l~C~v~g~p~p---~v~W~~~~~~i~~~--~~~~~~~~~~~~L~I~~~~~~D~--G~Y~C~a   75 (92)
T d1epfa2          12 EFKEGEDAVIVCDVVSSLPP---TIIWKHKGRDVILK--KDVRFIVLSNNYLQIRGIKKTDE--GTYRCEG   75 (92)
T ss_dssp             ECCTTSCEEECCEEECSSCC---EEEEEETTEEGGGG--CCTTEEECTTSCEEETTCCGGGC--EEEEEEE
T ss_pred             EEeCCCcEEEEEEEeecCCC---eEEEEEcCcccccc--cceeeeeeeeeeEEECCCCHHhC--EEEEEEE
Confidence            67799999999998655432   35899999777653  45688999999999999998774  5666654

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=97.42  E-value=9.1e-06  Score=49.76  Aligned_cols=54  Identities=13%  Similarity=0.194  Sum_probs=42.0

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCcc---EEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGe---L~Ir~v~~~~~   79 (98)
                      -|..|.+|+|.|.+..   +-. ...|++|+..|.+    +++|.+...|.   |.|.+++..|+
T Consensus        12 ~v~~G~~~~~~c~vs~---p~~-~v~W~k~g~~i~~----~~~~~~~~~~~~~~L~I~~~~~~D~   68 (89)
T d1tiua_          12 EVFVGETAHFEIELSE---PDV-HGQWKLKGQPLTA----SPDCEIIEDGKKHILILHNCQLGMT   68 (89)
T ss_dssp             EEETTSCCCEEEBCSS---SSC-CCBCCSSSCCCCS----SSSCEEEECSSCEEEECCSCCSCCC
T ss_pred             EEeCCCcEEEEEEECC---CCc-EEEEEEeeeeccc----ceeEEEEeeceeEEEEEcCCChhcC
Confidence            5678999999999842   222 4579999987766    67899988886   88999887764

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=6.9e-05  Score=46.53  Aligned_cols=56  Identities=9%  Similarity=0.023  Sum_probs=41.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      .+..|.++.|.|.+...-. . ...+|++++..|.+    +.++....++.|.|.+++.+|.
T Consensus        17 ~~~~G~~v~L~C~~~g~~~-~-~~i~W~k~~~~l~~----~~~~~~~~~~~L~I~~v~~~D~   72 (93)
T d1n26a1          17 TSLPGDSVTLTCPGVEPED-N-ATVHWVLRKPAAGS----HPSRWAGMGRRLLLRSVQLHDS   72 (93)
T ss_dssp             EECTTCCEEEECTTSCTTC-C-SEEEEEEECSSSSC----CCEEEEEESSEEEECSCCGGGC
T ss_pred             EEeCCCcEEEEEEeecCCC-C-ceEEEEEccccccc----eeeEEecCCCEEEECCCChhcC
Confidence            4567999999999753221 1 23789999866533    4677777889999999998875

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.32  E-value=7.7e-05  Score=45.29  Aligned_cols=67  Identities=13%  Similarity=0.195  Sum_probs=47.4

Q ss_pred             EEeeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          12 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        12 ~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      ...+. .|..|.++.|.|.+...-.-   -.+|++++..|.+    +.+|.+ .++.|.|.+++.+|.  ..-.|.++
T Consensus         7 ~~~~~-~v~~G~~~~l~C~~~g~P~p---~v~W~k~g~~i~~----~~~~~~-~~~~L~i~~v~~~D~--G~Y~C~a~   73 (89)
T d1cs6a4           7 VITDT-EADIGSDLRWSCVASGKPRP---AVRWLRDGQPLAS----QNRIEV-SGGELRFSKLVLEDS--GMYQCVAE   73 (89)
T ss_dssp             CCCCE-EEETTCCEEEECEEEEESCC---EEEEEETTEECCC----CSSEEE-ETTEEEESSCCGGGC--EEEEEEEE
T ss_pred             ECCCE-EECCCCcEEEEEEEEEEcCC---EEEEEEeeccccc----cceeee-eeeeEEEEeecccCC--EEEEEEEE
Confidence            34455 67899999999997433221   3479999987754    457766 588999999988763  45566554

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.29  E-value=7.4e-05  Score=44.93  Aligned_cols=66  Identities=17%  Similarity=0.125  Sum_probs=45.0

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .|..|.+|.|.|.+...-..  ....|.+|+..|...  ........++|.|+|++++.+|.  ..-.|.+.
T Consensus        13 ~v~~g~~~~l~C~~~g~p~p--~~v~W~~~g~~l~~~--~~~~~~~~~~~~L~i~~v~~~D~--G~Y~C~a~   78 (94)
T d1biha1          13 LFRENNPTVLECIIEGNDQG--VKYSWKKDGKSYNWQ--EHNAALRKDEGSLVFLRPQASDE--GHYQCFAE   78 (94)
T ss_dssp             EEETTSCEEECCCEESCCSS--CEEEEEESSSBCCTT--TTTEEECTTSCCEEESSCCGGGC--EEEEEEEE
T ss_pred             EEeCCCeEEEEEEecCCCCe--eEEEEEeeeeeeeee--cceeeecccceEEEEeccChhcC--eEEEEEEE
Confidence            56689999999997543322  346899998766331  22233445789999999998874  45666654

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=97.25  E-value=0.00013  Score=44.60  Aligned_cols=67  Identities=18%  Similarity=0.179  Sum_probs=46.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .|..|.++.|.|.+..+-.   -...|++|+..|.++............+.|.|++++.+|.  ..-+|..+
T Consensus        16 ~v~~G~~v~l~C~~~g~P~---p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~--G~Y~C~a~   82 (97)
T d3dara1          16 AVPAANTVKFRCPAGGNPM---PTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK--GNYTCVVE   82 (97)
T ss_dssp             EECTTCCEEEECCEEEESC---CEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGC--EEEEEEEE
T ss_pred             EECCCCcEEEEEEEeEECC---CEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccC--EEEEEEEE
Confidence            4668999999999743322   2467999998886654444444455678999999998765  35566654

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=97.24  E-value=0.00012  Score=44.53  Aligned_cols=71  Identities=14%  Similarity=0.142  Sum_probs=47.2

Q ss_pred             eEEEEeeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc-Cc--cEEEEeEeeecCCcceee
Q psy5692           9 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS-SG--DLYVQIRLSITGNLSVKK   85 (98)
Q Consensus         9 Yev~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp-sG--eL~Ir~v~~~~~n~~~~~   85 (98)
                      +..+..+. .|..|.+|.|.|.+.+.-.   ...+|++|+..|.+   .+..+.+.. +|  .|.|++++.+|.  ..-+
T Consensus         7 f~~~~~~~-~v~~g~~v~l~c~v~g~P~---p~v~W~k~~~~i~~---~~~~~~~~~~~~~~~L~I~~~~~~D~--G~Y~   77 (98)
T d1g1ca_           7 IFERIQSQ-TVGQGSDAHFRVRVVGKPD---PECEWYKNGVKIER---SDRIYWYWPEDNVCELVIRDVTGEDS--ASIM   77 (98)
T ss_dssp             EEECCCCE-EEETTSCEEEEEEEEEESC---CEEEEEETTEECCC---CSSEEEEEEETTEEEEEECSCCGGGC--EEEE
T ss_pred             EecCCCcE-EEcCCCcEEEEEEEEEecC---CeEEEEeCceEEee---eeeeEEEeccceEEEEEeccCccccC--EEEE
Confidence            33445565 7889999999999753322   23479999988865   233444443 33  689999988765  3455


Q ss_pred             eee
Q psy5692          86 MKV   88 (98)
Q Consensus        86 ~~~   88 (98)
                      |.+
T Consensus        78 c~a   80 (98)
T d1g1ca_          78 VKA   80 (98)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.22  E-value=0.00032  Score=44.53  Aligned_cols=74  Identities=16%  Similarity=0.200  Sum_probs=51.8

Q ss_pred             EeeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCc---CCCceEEEccCccEEEEeEeeecC-Ccceeeeee
Q psy5692          13 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT---DTGGKYVVLSSGDLYVQIRLSITG-NLSVKKMKV   88 (98)
Q Consensus        13 V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~---~~dgKY~vlpsGeL~Ir~v~~~~~-n~~~~~~~~   88 (98)
                      .++. -++.|.++.|.|.+++-. . .-...|.+++..+.+..   ....++.+.++|.|.|.+++..|. +...-+|..
T Consensus         9 ~~~~-t~~EG~~~~L~C~v~~G~-P-~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A   85 (111)
T d1biha2           9 THEK-TPIEGRPFQLDCVLPNAY-P-KPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTA   85 (111)
T ss_dssp             EEEE-CCBTTEEEEECCCCCEEE-S-CCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEE
T ss_pred             cccc-cccCCCeEEEEEEcccCC-C-CCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEE
Confidence            4454 678899999999974211 1 12455999985444432   234678899999999999999884 567777765


Q ss_pred             h
Q psy5692          89 E   89 (98)
Q Consensus        89 ~   89 (98)
                      .
T Consensus        86 ~   86 (111)
T d1biha2          86 K   86 (111)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.11  E-value=8.6e-05  Score=45.12  Aligned_cols=59  Identities=20%  Similarity=0.241  Sum_probs=42.0

Q ss_pred             EeeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCc---cEEEEeEeeecC
Q psy5692          13 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVQIRLSITG   79 (98)
Q Consensus        13 V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG---eL~Ir~v~~~~~   79 (98)
                      -.+. .+..|.+|.|.|.+.+.-.-   ...|.+++..|.+    +++|.+..+|   .|.|++++..|.
T Consensus         8 p~~~-~v~~G~~~~l~C~~~g~P~p---~v~W~~~~~~l~~----~~~~~~~~~~~~~~L~I~~~~~~D~   69 (97)
T d1koaa1           8 PYGT-EVGEGQSANFYCRVIASSPP---VVTWHKDDRELKQ----SVKYMKRYNGNDYGLTINRVKGDDK   69 (97)
T ss_dssp             CCCC-EEETTSCEEEEEEEECSSCC---EEEEEETTEECCS----BTTBBCCCSTTEEEEEESCCCSGGG
T ss_pred             CCCE-EEeCCCcEEEEEEEEEcCCC---EEEEEEeeeccce----eeEEEEEecCCeeEEEeCCCceecC
Confidence            3455 67899999999998544332   3589999977754    4577776555   488888877664

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=97.10  E-value=0.0002  Score=43.73  Aligned_cols=72  Identities=14%  Similarity=0.200  Sum_probs=47.5

Q ss_pred             eceEEEEeeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc----CccEEEEeEeeecCCcc
Q psy5692           7 QKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS----SGDLYVQIRLSITGNLS   82 (98)
Q Consensus         7 Q~Yev~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp----sGeL~Ir~v~~~~~n~~   82 (98)
                      ..+.....+. .+..|.++.|.|.+..+-.   -...|++++..|.+    +++|.+..    .+.|.|++++..|.-  
T Consensus         9 P~f~~~~~~~-~v~~G~~~~l~C~~~g~P~---p~v~W~k~~~~i~~----~~~~~~~~~~~~~~~L~I~~~~~~D~G--   78 (102)
T d1fhga_           9 PYFTKTILDM-EVVEGSAARFDCKVEGYPD---PEVMWFKDDNPVKE----SRHFQIDYDEEGNCSLTISEVCGDDDA--   78 (102)
T ss_dssp             EEEEECCCCE-EEETTSCEEEEEEEEEESC---CEEEEEETTEECCC----SSSEEEEECTTCEEEEEESSCCGGGCE--
T ss_pred             CeEEcCCCcE-EEecCCcEEEEEEEEeccC---CeEEEEeeeccccc----eeeEeEEEecCceeeeEecCCCHHhCE--
Confidence            3344455666 7889999999999853322   23589999987754    45666543    235899998876643  


Q ss_pred             eeeeee
Q psy5692          83 VKKMKV   88 (98)
Q Consensus        83 ~~~~~~   88 (98)
                      .-+|.+
T Consensus        79 ~Y~C~a   84 (102)
T d1fhga_          79 KYTCKA   84 (102)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            344443

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.00022  Score=43.06  Aligned_cols=66  Identities=12%  Similarity=0.235  Sum_probs=45.4

Q ss_pred             eeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCc---cEEEEeEeeecCCcceeeeee
Q psy5692          14 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        14 ~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG---eL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      ++. -|..|.+|.|.|.+. .- + . -..|++++..+.++  ...+|.+..+|   .|.|++++.+|+  ..-.|.+
T Consensus         8 ~~~-~v~~G~~v~l~C~v~-~p-~-~-~v~W~k~~~~~~~~--~~~~~~~~~~~~~~~L~I~~v~~~D~--G~Y~C~a   76 (90)
T d1x44a1           8 EDT-TAYCGERVELECEVS-ED-D-A-NVKWFKNGEEIIPG--PKSRYRIRVEGKKHILIIEGATKADA--AEYSVMT   76 (90)
T ss_dssp             CCE-EEETTEEEEEEEECS-SS-S-C-CCEEEETTEECCCS--TTCSEEEEEETTEEEEEEEEECTTTC--SEEEEEE
T ss_pred             CCE-EEeCCCcEEEEEEEC-CC-C-c-eEEEEEeecccCCC--CCccEEEEEeCCccEEEECccccccC--EEEEEEE
Confidence            344 577899999999983 32 2 2 25699999777553  34567777655   799999998874  3444443

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.02  E-value=0.00014  Score=43.96  Aligned_cols=61  Identities=16%  Similarity=0.266  Sum_probs=43.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .|..|.++.|.|.+..+-.-   ...|.+++..|.     ++|+.+..++ |.|.+++..|  +..-.|...
T Consensus        14 ~v~~G~~~~l~C~~~g~P~p---~v~W~~~~~~i~-----~~~~~~~~~~-L~i~~v~~~d--~G~Y~C~a~   74 (89)
T d1biha4          14 VVKQGQDVTIPCKVTGLPAP---NVVWSHNAKPLS-----GGRATVTDSG-LVIKGVKNGD--KGYYGCRAT   74 (89)
T ss_dssp             EECTTSCEEEECEEEEESCC---CCEEEETTEECC-----SSSEEEETTE-EEESSCCSTT--CEEEEEEEE
T ss_pred             EEeCCCeEEEEEEEEEeCCC---EEEEEeCCccCc-----cccEEEeeee-EEECCCChhh--CEEEEEEEE
Confidence            34579999999997433332   247999997772     5788887654 9999998766  345566654

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00014  Score=44.37  Aligned_cols=62  Identities=19%  Similarity=0.321  Sum_probs=43.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCc---cEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsG---eL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      -|..|.++.|.|.+..   .-. -..|++++..|.+   .+.+|.+...|   .|.|.++...|.  ..-.|.+
T Consensus        17 ~v~~G~~v~l~c~v~~---p~~-~v~W~k~g~~i~~---~~~~~~~~~~~~~~~L~I~~~~~~D~--G~Y~c~a   81 (94)
T d1pd6a_          17 QVSKGHKIRLTVELAD---HDA-EVKWLKNGQEIQM---SGSKYIFESIGAKRTLTISQCSLADD--AAYQCVV   81 (94)
T ss_dssp             EEETTSCEEEEEECSS---SSS-CCEEEESSSEECC---CSSSSEEEEETTEEEEEECSCSSSSC--EEEEEEE
T ss_pred             EECcCCeEEEEEEECC---CCc-eEEEEEcCcccee---eeeeEeeeccCCeEEeecCCCCceec--EEEEEEE
Confidence            3668999999999842   122 3479999988866   35667766544   499999888774  3445544

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00036  Score=42.63  Aligned_cols=63  Identities=16%  Similarity=0.149  Sum_probs=43.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEc--cCc-cEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL--SSG-DLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vl--psG-eL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .|..|.++.|.|.+..+-..   ...|.+|+..|..    +++|.+.  +++ .|.|.+++.+|.  ..-+|.+.
T Consensus        11 ~v~~G~~~~l~C~v~g~p~p---~v~W~k~~~~l~~----~~~~~~~~~~~~~~L~I~~~~~~D~--G~Y~C~a~   76 (101)
T d2cqva1          11 KVRAGESVELFGKVTGTQPI---TCTWMKFRKQIQE----SEHMKVENSENGSKLTILAARQEHC--GCYTLLVE   76 (101)
T ss_dssp             EEETTCCEEEEEEEESSSSC---EEEEEESSSBCCC----SSSEEEEECSSEEEEEETTCCTTTC--EEEEEEEE
T ss_pred             EEeCCCcEEEEEEEEecCCC---EEEEEeCceeecc----CCcEEEEEecceeEEEEeeCCcccC--EEEEEEEE
Confidence            67799999999998655432   3569999977754    4566654  333 488888887665  45566553

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00049  Score=42.23  Aligned_cols=67  Identities=9%  Similarity=0.109  Sum_probs=44.1

Q ss_pred             eecCeEEEEccCCCCccc-eeEEeEEccCCeeee--cCc------CCCceEEEccCc--cEEEEeEeeecCCcceeeeee
Q psy5692          20 ILGNTAVLRCQIPSYMSE-YIIVTSWIQDDVNIY--LNT------DTGGKYVVLSSG--DLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        20 irGNtAVLkC~IPs~V~d-~V~V~SW~~Dd~~I~--p~~------~~dgKY~vlpsG--eL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      ..|.+|+|.|.+.....+ ....+.|.+++..++  ...      ...||.....+|  .|.|+|++.+|+  ..=.|.|
T Consensus         7 ~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~--G~Y~C~V   84 (105)
T d1dr9a1           7 EVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDE--GTYECVV   84 (105)
T ss_dssp             ETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGC--EEEEEEE
T ss_pred             EeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHC--eEEEEEE
Confidence            389999999998755444 446788998883332  111      124566666556  599999999885  3444544

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.81  E-value=0.00086  Score=40.52  Aligned_cols=66  Identities=18%  Similarity=0.214  Sum_probs=45.2

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEc-cCccEEEEeEeeecCCcceeeeeeh
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL-SSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vl-psGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      +..|.+|.|.|.+..+-.-   ..+|.+++..|......+.++... .++.|.|++++.+|  +..-.|.++
T Consensus        17 ~~~G~~v~l~C~~~g~P~p---~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D--~G~Y~C~a~   83 (100)
T d1qz1a3          17 ANLGQSVTLVCDADGFPEP---TMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKND--EAEYVCIAE   83 (100)
T ss_dssp             TTSCCCEEEEEEEEEESCC---EEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGG--CEEEEEEEE
T ss_pred             EcCCCCEEEEEEEEEecCC---EEEEEeCCcccccccccceeEEeecCceEEEeCCCCccc--CEEEEEEEE
Confidence            4579999999997533322   367999997776554455566554 47889999999877  345566553

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.00072  Score=40.27  Aligned_cols=65  Identities=11%  Similarity=0.048  Sum_probs=41.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeec--C------cCCCceEEEc-cCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYL--N------TDTGGKYVVL-SSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p--~------~~~dgKY~vl-psGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      +++.|.+++|.|.+..   +.. -..|.+++..|..  .      ....++..+. .+|.|.|++++.+|.  -.=+|++
T Consensus         6 ~~~~G~sVtl~c~~~~---p~~-~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~Ds--G~Y~c~~   79 (93)
T d1ccza1           6 YGVVYGNVTFHVPSNV---PLK-EVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDE--DEYEMES   79 (93)
T ss_dssp             EEETTCCEEECCCCSS---CCS-CEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGC--EEEEEEC
T ss_pred             EEEECCCEEEEecCCC---CCc-EEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhC--EEEEEEE
Confidence            6779999999998542   222 3469998844421  1      1123455554 489999999999874  3334543

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.00053  Score=41.24  Aligned_cols=64  Identities=13%  Similarity=-0.061  Sum_probs=41.9

Q ss_pred             EEEeeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc---CccEEEEeEeeecC
Q psy5692          11 INVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS---SGDLYVQIRLSITG   79 (98)
Q Consensus        11 v~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp---sGeL~Ir~v~~~~~   79 (98)
                      .+..+. .|..|.+|.|.|.+...-..-+..+-|..+...+ +   ....+.+..   .|.|.|.+++.+|.
T Consensus         6 ~~~~~~-~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~L~I~~v~~~D~   72 (96)
T d2c9aa1           6 LRIQNV-EVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDA-P---LKEIKVTSSRRFIASFNVVNTTKRDA   72 (96)
T ss_dssp             CCCCCE-EECSSSCEEEEEEEESCCCSSCEEEEEETTBCCC-C---EEEEEEEETTEEEEEEEECSCCGGGC
T ss_pred             cccCCE-EEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeee-c---CCceeEEEeecCceEEEECCCCHHHC
Confidence            355666 7889999999999865554555566666655333 2   122333322   46799999998875

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.001  Score=40.59  Aligned_cols=58  Identities=10%  Similarity=0.147  Sum_probs=36.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEE-ccCc-----cEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV-LSSG-----DLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~v-lpsG-----eL~Ir~v~~~~~   79 (98)
                      .|..|.++.|.|.+...-. .. ..+|.+++..+.+..  +.++.. .+.+     -|+|++++.+|.
T Consensus        14 ~v~~G~~v~L~C~v~g~p~-~P-~v~W~k~~~~~~~~~--~~~~~~~~~~~~~~~~~L~I~~v~~~D~   77 (104)
T d2aw2a1          14 SILAGDPFELECPVKYCAN-RP-HVTWCKLNGTTCVKL--EDRQTSWKEEKNISFFILHFEPVLPNDN   77 (104)
T ss_dssp             EEETTSCEEEEEEEECSSS-CC-EEEEEEECSSCEEEC--CSSCEEEEECSSCEEEEEEESSCCGGGC
T ss_pred             EEeCCCeEEEEEEEEeeCC-CC-EEEEEecCccccccc--ceeeeeEEecCCceEEEEEEccccHHHC
Confidence            6789999999999864432 11 358999984443321  222221 1222     399999888875

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.00053  Score=42.70  Aligned_cols=58  Identities=14%  Similarity=0.174  Sum_probs=38.4

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecC
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITG   79 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~   79 (98)
                      +..|.+++|+|.+..-  +.-....|.+++..+......+.+.+ ..+|-|+|.+++.+|.
T Consensus        14 ~~~~e~~~l~C~~~~~--~~~~~i~W~k~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~   71 (101)
T d1iray1          14 SSANEIDVRPCPLNPN--EHKGTITWYKDDSKTPVSTEQASRIH-QHKEKLWFVPAKVEDS   71 (101)
T ss_dssp             EETTSCEEECCCCCGG--GCSSEEEEECSSTTSBCCCCTTSSEE-EETTEEEETTCCGGGC
T ss_pred             EeCCCeEEEEeeCCCC--CCCceEEEEECCcccccccccceEEe-ccCCEEEeccceecCC
Confidence            4579999999986421  22334699999844433333444444 3578899999888873

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.0014  Score=39.31  Aligned_cols=68  Identities=18%  Similarity=0.181  Sum_probs=43.2

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC--eeeecCcCCCceEEEccCc---cEEEEeEeee-cCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VNIYLNTDTGGKYVVLSSG---DLYVQIRLSI-TGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd--~~I~p~~~~dgKY~vlpsG---eL~Ir~v~~~-~~n~~~~~~~~~   89 (98)
                      .+..|..|.|.|.+-+.-.  ...++|.+++  .........++||.+...+   .|.|.++..+ |.  ..-.|...
T Consensus        13 ~v~~G~~v~l~C~v~g~P~--p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~--G~Y~C~A~   86 (101)
T d3b5ha1          13 HINEGETAMLVCKSESVPP--VTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADP--GQYRCNGT   86 (101)
T ss_dssp             EECTTSCEEEEEECCCSSC--CCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSS--EEEEEEEE
T ss_pred             EECcCCeEEEEEEEEecCC--eeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCC--EEEEEEEE
Confidence            6778999999999865432  2357898865  2222233356788887655   6777777643 32  34555543

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.001  Score=39.41  Aligned_cols=63  Identities=16%  Similarity=0.175  Sum_probs=41.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEc--c---CccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL--S---SGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vl--p---sGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .|..|.+|.|.|.+...-.-   ...|.+++..|.+    ++++.+.  .   .+.|.|++++.+|  +..-.|.+.
T Consensus         7 ~v~~G~~~~l~C~v~g~p~p---~v~W~k~g~~l~~----~~~~~~~~~~~~~~~~L~I~~~~~~D--~G~Y~C~a~   74 (91)
T d1rhfa1           7 TVSQGQPVKLNCSVEGMEEP---DIQWVKDGAVVQN----LDQLYIPVSEQHWIGFLSLKSVERSD--AGRYWCQVE   74 (91)
T ss_dssp             EEETTCCEEEEEEEESCSSC---CEEEEETTEECCS----SEEEEEEEETTEEEEEEEESSCCGGG--CEEEEEEES
T ss_pred             EEcCCCeEEEEEEEEecCCc---eEEEEEeeccccc----ceeeeeeecccCceeeEEECCCCccc--CEEEEEEEE
Confidence            46689999999998544332   3589999977654    2333322  2   3468999988776  456666654

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=96.45  E-value=0.0016  Score=39.43  Aligned_cols=55  Identities=9%  Similarity=0.010  Sum_probs=34.5

Q ss_pred             EEeeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeec
Q psy5692          12 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSIT   78 (98)
Q Consensus        12 ~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~   78 (98)
                      +.... .|+.|.+++|+|..+...  -..-..|++|+..+.++.         .++.|.|.+++.+|
T Consensus         8 q~p~~-~v~eG~~v~L~C~~~~~~--p~~~~~W~kng~~~~~~~---------~~~~l~I~~v~~~d   62 (89)
T d1fnla2           8 QAPRW-VFKEEDPIHLRCHSWKNT--ALHKVTYLQNGKDRKYFH---------HNSDFHIPKATLKD   62 (89)
T ss_dssp             ECSCS-EEETTCCEEEEEEECTTC--CCEEEEEEETTEEEEEEE---------ECCCEEESSCCGGG
T ss_pred             ECCCC-eEccCCeEEEEEEecCCC--CCcEEEEEEcccccceec---------cccccEECccceec
Confidence            34455 678999999999865322  234678999986654421         13455555555444

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.39  E-value=0.0019  Score=39.18  Aligned_cols=67  Identities=21%  Similarity=0.289  Sum_probs=43.0

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCc------CCCceEEEc-cCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT------DTGGKYVVL-SSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~------~~dgKY~vl-psGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .|..|.++.|.|.+.+.  +--.-..|++++..|.+..      ..++.+... .++.|.|++++.+|.  ..-.|..
T Consensus        13 ~v~~G~~v~L~C~~~~g--~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~--G~Y~C~a   86 (110)
T d1f97a2          13 SVTIGNRAVLTCSEHDG--SPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDS--GEYYCQA   86 (110)
T ss_dssp             EEETTSCEEEEEECSCC--BSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGC--EEEEEEE
T ss_pred             EEecCCeEEEEEEeecC--CCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCC--EEEEEEE
Confidence            57789999999997521  2233568999986664422      123445554 478899999888773  3444544

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.34  E-value=0.002  Score=38.73  Aligned_cols=65  Identities=15%  Similarity=0.181  Sum_probs=43.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-eeeecCcCCCceEEEcc----CccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYVVLS----SGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-~~I~p~~~~dgKY~vlp----sGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .|..|.++.|.|.+...-. .. ...|++++ ..+.+   .+.+|.+..    ++.|.|++++..|  +..-.|.+.
T Consensus        11 ~v~~G~~~~l~C~v~g~p~-~~-~v~W~~~~g~~~~~---~~~~~~~~~~~~~~~~L~I~~~~~~D--~G~Y~C~a~   80 (97)
T d1epfa1          11 EISVGESKFFLCQVAGDAK-DK-DISWFSPNGEKLSP---NQQRISVVWNDDDSSTLTIYNANIDD--AGIYKCVVT   80 (97)
T ss_dssp             EEETTCCEEEEEEECCCSC-CC-EEEEECTTSCEECC---BSSSEEEEEEETTEEEEEECSCCGGG--CEEEEEEEE
T ss_pred             EEccCCcEEEEEEEEeccC-CC-EEEEEEeeeeeeee---ccccEEEEeecCcceEEEcccCchhh--ceEEEEEEE
Confidence            4668999999999764432 22 46899866 66655   245666543    3569999988776  345566654

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.0021  Score=38.73  Aligned_cols=39  Identities=18%  Similarity=0.206  Sum_probs=27.6

Q ss_pred             EEeeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeec
Q psy5692          12 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYL   53 (98)
Q Consensus        12 ~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p   53 (98)
                      +.... .|+.|.+++|.|..+..-  =.....|++|+..+..
T Consensus         6 q~p~~-~V~eG~~v~L~C~~~~~~--~~~~~~w~k~g~~~~~   44 (89)
T d1f2qa2           6 QASAE-VVMEGQPLFLRCHGWRNW--DVYKVIYYKDGEALKY   44 (89)
T ss_dssp             EESCS-EEETTSCEEEEEEEGGGC--CEEEEEEEETTEECCS
T ss_pred             eCCcC-eEeCCCEEEEEEEecCCC--CCeEEEEEEeeecccc
Confidence            44555 788999999999874221  2356679999976643

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=96.10  E-value=0.00054  Score=41.05  Aligned_cols=63  Identities=13%  Similarity=0.169  Sum_probs=44.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEE---ccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV---LSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~v---lpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .|..|.+|.|.|.+.++-.-   ...|++++..|.+    ++++.+   ...+.|.|.+++..|.  ..-+|.+.
T Consensus        10 ~v~~G~~~~l~C~~~g~P~p---~v~W~~~g~~l~~----~~~~~~~~~~~~~~L~i~~v~~~D~--G~Y~C~a~   75 (91)
T d1tnna_          10 TVYEGESARFSCDTDGEPVP---TVTWLRKGQVLST----SARHQVTTTKYKSTFEISSVQASDE--GNYSVVVE   75 (91)
T ss_dssp             ECSSSSCCCEEEECCCSSCC---CCEEESSSSTTCS----SSSCEEEECSSEEEEECSSCCSCCC--EEEEEECB
T ss_pred             EEeCCCcEEEEEEEEEEeCC---eEEEEEeeccccc----ccceeeeeecceeEEeecCCCHHHC--EEEEEEEE
Confidence            57789999999998755432   3579999976644    334433   3578899999987764  56666654

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.004  Score=37.89  Aligned_cols=68  Identities=18%  Similarity=0.174  Sum_probs=41.1

Q ss_pred             eeecCeEEEEccCC--CCccceeEEeEEccCC-eeee---cCc--------CCCceEEE-ccCccEEEEeEeeecCCcce
Q psy5692          19 VILGNTAVLRCQIP--SYMSEYIIVTSWIQDD-VNIY---LNT--------DTGGKYVV-LSSGDLYVQIRLSITGNLSV   83 (98)
Q Consensus        19 VirGNtAVLkC~IP--s~V~d~V~V~SW~~Dd-~~I~---p~~--------~~dgKY~v-lpsGeL~Ir~v~~~~~n~~~   83 (98)
                      ++.|.+|+|.|.+.  .........+.|..++ ..++   ++.        ...+|-.. ..+..|.|+|++.+|+-  .
T Consensus         6 a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G--~   83 (110)
T d1ncna_           6 AYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKG--L   83 (110)
T ss_dssp             EETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCE--E
T ss_pred             EEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCE--E
Confidence            45899999999873  3344455677787765 3322   211        12233333 23566999999998863  3


Q ss_pred             eeeee
Q psy5692          84 KKMKV   88 (98)
Q Consensus        84 ~~~~~   88 (98)
                      =.|.|
T Consensus        84 Y~C~V   88 (110)
T d1ncna_          84 YQCII   88 (110)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44554

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.08  E-value=0.00097  Score=39.25  Aligned_cols=61  Identities=11%  Similarity=0.016  Sum_probs=40.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .|..|.++.|.|.+.+--  =....+|.+++..+.+     ++. ...+|.|+|++++..|  +..-.|.+
T Consensus        13 ~v~~G~~~~l~C~~~~~~--p~~~v~W~k~~~~~~~-----~~~-~~~~~~L~i~~v~~~d--~G~Y~C~a   73 (89)
T d1gl4b_          13 SVRPGADVTFICTAKSKS--PAYTLVWTRLHNGKLP-----SRA-MDFNGILTIRNVQPSD--AGTYVCTG   73 (89)
T ss_dssp             EECTTCCEEEEEEEEESS--SCCEEEEEEGGGBCCC-----TTE-EEETTEEEECSCCGGG--CEEEEEEE
T ss_pred             EEeCCCcEEEEEEccCCC--CCCEEEEecCCceeec-----ccc-EeeceEEEEecCCccc--CEEEEEEE
Confidence            567899999999975321  1234689999865544     233 3468899999998765  33445544

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.08  E-value=0.0013  Score=39.52  Aligned_cols=65  Identities=14%  Similarity=0.158  Sum_probs=39.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC----eeeecCcC----CCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD----VNIYLNTD----TGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd----~~I~p~~~----~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .|..|.+|.|.|.+.++-..   ...|.+++    ...++...    ...++. +-++.|+|++++.+|.  ..-.|.+
T Consensus        12 ~v~~G~~v~l~C~~~g~p~p---~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~tL~I~~v~~~D~--G~Y~C~a   84 (102)
T d1f97a1          12 QVPENESIKLTCTYSGFSSP---RVEWKFVQGSTTALVCYNSQITAPYADRVT-FSSSGITFSSVTRKDN--GEYTCMV   84 (102)
T ss_dssp             EEETTCCEEEECEEESCSSE---EEEEEEEETTEEEEEEETTEECGGGTTTEE-EETTEEEESCCCGGGC--EEEEEEE
T ss_pred             EEeCCCEEEEEEEcCCCCCC---eEEEEeccccceeeeccccccccceeeEEE-ecCCEEEEeECCccCC--EEEEEEE
Confidence            34579999999998765443   34688765    12222211    123333 3467899999998883  3445544

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.0021  Score=39.34  Aligned_cols=71  Identities=10%  Similarity=0.053  Sum_probs=40.9

Q ss_pred             eeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc---------CccEEEEeEeeecCCccee
Q psy5692          14 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS---------SGDLYVQIRLSITGNLSVK   84 (98)
Q Consensus        14 ~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp---------sGeL~Ir~v~~~~~n~~~~   84 (98)
                      .+. .|..|.+|.|.|.+-+.-.-..-...|++++..+... ..+.++....         ++.|.|++++..|.-  .-
T Consensus        12 ~~~-~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G--~Y   87 (110)
T d2avga1          12 QDG-EVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSS-KVGQHLQLHDSYDRASKVYLFELHITDAQPAFTG--GY   87 (110)
T ss_dssp             CCE-EEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTT-TCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCE--EE
T ss_pred             CeE-EEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecc-cCCceeEeeeeeEEecccCEEEEEEeccCHHHCc--EE
Confidence            444 6789999999999843321112246899987332221 1122222221         346999999987753  34


Q ss_pred             eeee
Q psy5692          85 KMKV   88 (98)
Q Consensus        85 ~~~~   88 (98)
                      .|.+
T Consensus        88 ~C~a   91 (110)
T d2avga1          88 RCEV   91 (110)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4444

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0015  Score=41.10  Aligned_cols=65  Identities=11%  Similarity=0.068  Sum_probs=44.2

Q ss_pred             ceeecCeEEEEccCCCC---ccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSY---MSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~---V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+-.|..+.|.|-.-.+   -.+..-..+|.+|...|.+    ++++.+..+|.|+|++++.+|.-  .=.|..
T Consensus        10 ~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~----~~~~~~~~~~~L~I~~v~~~D~G--~Y~C~a   77 (103)
T d1iray2          10 KLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLL----DNIHFSGVKDRLIVMNVAEKHRG--NYTCHA   77 (103)
T ss_dssp             EEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCC----CSSSEEEETTEEEESSCCGGGCE--EEEEEE
T ss_pred             EEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccC----CCcEEEecCCEEEEcccccccCc--EEEEEE
Confidence            46689999999932211   1233346899999987743    45566667889999999888763  344443

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0044  Score=38.41  Aligned_cols=82  Identities=15%  Similarity=0.259  Sum_probs=52.6

Q ss_pred             eceEEEEeeeeceeecCeEEEEccC--CC--CccceeEEeEEccCC--e---ee-ec-C------cCCCceEEEcc----
Q psy5692           7 QKYEINVNYEHNVILGNTAVLRCQI--PS--YMSEYIIVTSWIQDD--V---NI-YL-N------TDTGGKYVVLS----   65 (98)
Q Consensus         7 Q~Yev~V~d~~~VirGNtAVLkC~I--Ps--~V~d~V~V~SW~~Dd--~---~I-~p-~------~~~dgKY~vlp----   65 (98)
                      |.|+++++.+=.|..|.++.|.|.+  |+  ........+.|.+..  .   .+ +. +      ....||+.++.    
T Consensus         1 ~~~~~~~~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~   80 (121)
T d2g5ra1           1 KDYSLTMQSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQT   80 (121)
T ss_dssp             -CCEEECCSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGG
T ss_pred             CceEEEeCCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcC
Confidence            5677777765456799999999987  32  334456678898864  1   11 11 1      12357888753    


Q ss_pred             -CccEEEEeEeeecCCcceeeeeehH
Q psy5692          66 -SGDLYVQIRLSITGNLSVKKMKVEE   90 (98)
Q Consensus        66 -sGeL~Ir~v~~~~~n~~~~~~~~~~   90 (98)
                       +..|.|++++.+|.  ..=-|.++-
T Consensus        81 ~~~sL~I~~v~~~Ds--G~Y~C~v~~  104 (121)
T d2g5ra1          81 KNCTLSIRDARMSDA--GRYFFRMEK  104 (121)
T ss_dssp             TBCCEEECSCCGGGC--EEEEEEEEE
T ss_pred             CEEEEEECCCChHHC--EEEEEEEEe
Confidence             33599999998874  566677654

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.0029  Score=37.88  Aligned_cols=60  Identities=22%  Similarity=0.349  Sum_probs=38.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcC-----CCceEEE-ccCccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTD-----TGGKYVV-LSSGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~-----~dgKY~v-lpsGeL~Ir~v~~~~~   79 (98)
                      .|..|.++.|.|.+.+.-  =.....|++++..|.+...     .++++.. ..++.|.|.+++.+|.
T Consensus        13 ~v~~G~~v~l~C~~~~g~--p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~   78 (104)
T d1nbqa2          13 SATIGNRAVLTCSEQDGS--PPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDT   78 (104)
T ss_dssp             EEETTSCEEECCCCCSCB--SCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGC
T ss_pred             EEecCCcEEEEEEeecCC--CCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccC
Confidence            466899999999974321  1234679999866644221     2333333 3578888988877665

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=95.77  E-value=0.0057  Score=36.26  Aligned_cols=57  Identities=12%  Similarity=0.095  Sum_probs=39.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .|++|.+++|.|.+...-...  ...|..|+..+..           .++.|+|.+++.+|  +..-.|+..
T Consensus        15 ~v~~G~~v~L~C~~~~~~~~~--~~~w~~~g~~~~~-----------~~~~l~i~~v~~~d--sG~Y~C~a~   71 (85)
T d2fcba1          15 NVLQEDSVTLTCRGTHSPESD--SIQWFHNGNLIPT-----------HTQPSYRFKANNND--SGEYTCQTG   71 (85)
T ss_dssp             EEETTCEEEEEEECSSCCCTT--CCEEEETTEECTT-----------CCSSEEEEECCGGG--CEEEEEECT
T ss_pred             EEcCCCeEEEEEEEeecccee--EEEeecccccccc-----------cccceEEeeccccC--CcEEEEECC
Confidence            688999999999986555442  3468888765532           25678888877654  456666543

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=95.68  E-value=0.0034  Score=37.72  Aligned_cols=34  Identities=21%  Similarity=0.282  Sum_probs=24.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYL   53 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p   53 (98)
                      .|+.|.+++|.|.++.--  -.....|++|+..+-+
T Consensus        11 ~v~eG~~v~L~C~~~~~~--p~~~~~W~k~g~~~~~   44 (88)
T d2fcba2          11 EFQEGETIVLRCHSWKDK--PLVKVTFFQNGKSKKF   44 (88)
T ss_dssp             EECTTCCEEEEEEEGGGC--CCEEEEEEETTEEEEE
T ss_pred             eEecCCeEEEEEEecCCC--CCcEEEEEeecccccc
Confidence            577999999999875321  2345789999866644

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.66  E-value=0.0013  Score=39.45  Aligned_cols=59  Identities=14%  Similarity=-0.005  Sum_probs=38.7

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .+..|.++.|.|.+...-.-   ..+|.+++..+..       ..+..+|.|.|.+++..|.  ..-.|..
T Consensus        16 ~~~~G~~v~l~C~~~g~P~p---~i~W~k~~~~~~~-------~~~~~~~~L~I~~v~~~D~--G~Y~C~a   74 (91)
T d1cs6a3          16 YALTGQMVTLECFAFGNPVP---QIKWRKLDGSQTS-------KWLSSEPLLHIQNVDFEDE--GTYECEA   74 (91)
T ss_dssp             EEETTCCEEEECEEEEESCC---EEEEEECCSCCSC-------CCSBSSSEEEECSCCGGGC--EEEEEEE
T ss_pred             EEecCCcEEEEEEEEEccCC---EEEEEecccccce-------EeeeeeeEEEeCCCCccCC--EEEEEEE
Confidence            67899999999998544332   3479987743222       1233567899999887664  3455554

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.00071  Score=40.65  Aligned_cols=66  Identities=11%  Similarity=0.094  Sum_probs=41.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecC--------cCCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN--------TDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~--------~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .|..|.++.|.|.+..+-..   ...|.+++..+.+.        ....+++. +.++.|.|++++.+|  +..-.|.+.
T Consensus        15 ~v~~g~~v~L~C~~~g~p~p---~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D--~G~Y~C~a~   88 (105)
T d1nbqa1          15 RIPENNPVKLSCAYSGFSSP---RVEWKFDQGDTTRLVCYNNKITASYEDRVT-FLPTGITFKSVTRED--TGTYTCMVS   88 (105)
T ss_dssp             CEETTCCCEEECEEESCSSE---EEEEEEEETTEEEESEETTEECTTTTTTCE-EETTEEECSCCCTTS--CSEEEEEEE
T ss_pred             EEeCCCeEEEEEEeCCCCCC---eeEEEeeeeceeeeeeccceeeccccceee-ecCceEEEecccccc--eeeEEEEEE
Confidence            45689999999998654432   34799876332221        11233333 346789999998877  345666654

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.008  Score=36.29  Aligned_cols=54  Identities=19%  Similarity=0.195  Sum_probs=37.7

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCC
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGN   80 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n   80 (98)
                      +..|-++.|.|.+.+.-.  ....+|.+++..+      +..+....++.|.|++++.+|+.
T Consensus        15 ~~~G~~~~l~C~~~~g~p--~p~v~W~~~~~~~------~~~~~~~~~~~L~i~~v~~~D~G   68 (90)
T d1gsma1          15 VALGASRQLTCRLACADR--GASVQWRGLDTSL------GAVQSDTGRSVLTVRNASLSAAG   68 (90)
T ss_dssp             EETTCCEEEEEEECCSST--TCEEEEESSTTTT------CCEEEESSEEEEEECSCCGGGCE
T ss_pred             EEeCCcEEEEEEecCCCC--ccEEEEEEeeeee------eeeeccCceeeEEcCccChhhCC
Confidence            348999999998643211  2357899877433      33455566788999999988864

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.29  E-value=0.016  Score=34.31  Aligned_cols=78  Identities=12%  Similarity=0.180  Sum_probs=43.7

Q ss_pred             eEEEEeeeeceeecCeEEEEccCC--CC--ccceeEEeEEccCC----eee-ecC------cCCCceEEEcc-----Ccc
Q psy5692           9 YEINVNYEHNVILGNTAVLRCQIP--SY--MSEYIIVTSWIQDD----VNI-YLN------TDTGGKYVVLS-----SGD   68 (98)
Q Consensus         9 Yev~V~d~~~VirGNtAVLkC~IP--s~--V~d~V~V~SW~~Dd----~~I-~p~------~~~dgKY~vlp-----sGe   68 (98)
                      |+|.+..+=.+..|.++.|.|.+.  ..  ..+... +.|.+..    ..+ +..      ....+|+.+..     +..
T Consensus         2 w~V~~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~s   80 (118)
T d1qfoa_           2 WGVSSPKNVQGLSGSCLLIPCIFSYPADVPVSNGIT-AIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCN   80 (118)
T ss_dssp             CEEECCSEEEEETTSCEEECCEEECCTTSCC--CCE-EEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCC
T ss_pred             cEEECCCEEEEecCCcEEEEEEEeeccCCCCcceEE-EEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEE
Confidence            344433332677999999999863  22  222333 3455432    222 211      13478898862     334


Q ss_pred             EEEEeEeeecCCcceeeeeeh
Q psy5692          69 LYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        69 L~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      |.|++++.+|.  ..--|.++
T Consensus        81 L~I~~v~~~Ds--G~Y~C~v~   99 (118)
T d1qfoa_          81 LLLKDLKPEDS--GTYNFRFE   99 (118)
T ss_dssp             EEECSCCGGGC--EEEEEEEE
T ss_pred             EEECCCChhHC--EEEEEEEE
Confidence            99999998864  44455554

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.01  Score=35.73  Aligned_cols=67  Identities=15%  Similarity=0.081  Sum_probs=41.5

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCC-e-eee-c-------CcCCCceEEEccC------ccEEEEeEeeecCCcc
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD-V-NIY-L-------NTDTGGKYVVLSS------GDLYVQIRLSITGNLS   82 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-~-~I~-p-------~~~~dgKY~vlps------GeL~Ir~v~~~~~n~~   82 (98)
                      +..|.+|+|.|..++.-..+   ..|.+.+ . .+. .       .....+|+....+      ..|.|++++.+|.  +
T Consensus         6 ~~~G~svtL~C~~s~~~~~~---~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~Ds--G   80 (97)
T d2nxyb1           6 GKKGDTVELTCTASQKKSIQ---FHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDS--D   80 (97)
T ss_dssp             EETTSCEEECCBCSSSSCCC---EEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGC--E
T ss_pred             EEcCCcEEEEEEEecCCCce---EEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHC--E
Confidence            34899999999987644333   4698765 2 111 1       1223566655422      2599999998884  4


Q ss_pred             eeeeeehH
Q psy5692          83 VKKMKVEE   90 (98)
Q Consensus        83 ~~~~~~~~   90 (98)
                      .=-|.++.
T Consensus        81 ~Y~C~v~~   88 (97)
T d2nxyb1          81 TYICEVED   88 (97)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEEec
Confidence            55566543

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=95.25  E-value=0.0071  Score=36.33  Aligned_cols=68  Identities=13%  Similarity=0.149  Sum_probs=44.2

Q ss_pred             eeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEc---cCccEEEEeEeeecCCcceeeeeeh
Q psy5692          14 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL---SSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        14 ~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vl---psGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      ++- .+..|.++.|.|.+.++-.-   ...|.+++..|...  ...++...   ..+.|.|++++..|.  ..-.|.+.
T Consensus        11 ~~~-~~~~G~~v~l~C~~~g~P~~---~v~W~k~g~~i~~~--~~~~~~~~~~~~~~~L~I~~~~~~D~--G~Y~C~a~   81 (97)
T d1biha3          11 KDM-MAKAGDVTMIYCMYGSNPMG---YPNYFKNGKDVNGN--PEDRITRHNRTSGKRLLFKTTLPEDE--GVYTCEVD   81 (97)
T ss_dssp             CSE-EEETTSCEEEEEEEECSSCC---CCEEEETTEECCCC--TTSSEESCSSSTTSEEEESSCCGGGC--EEEEEEEC
T ss_pred             CCE-EEecCCeEEEEEEEEEecCC---EEEEEEeeeecccc--ceeeeeeeeecCCCEEEEEecccccc--EEEEEEEE
Confidence            344 77899999999998554333   35799999776432  22333322   345799999988763  34556554

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.20  E-value=0.0061  Score=36.08  Aligned_cols=60  Identities=13%  Similarity=0.042  Sum_probs=40.0

Q ss_pred             eecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          20 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        20 irGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      -.|.++.|.|.+...-.-   ..+|.+++..+..    +..+....++.|.|++++.+|+  -.-.|..
T Consensus        14 ~~G~~v~l~C~~~g~p~p---~i~W~~~~~~~~~----~~~~~~~~~~~L~I~~v~~~d~--G~Y~C~a   73 (90)
T d1vcaa2          14 QIGDSVSLTCSTTGCESP---FFSWRTQIDSPLN----GKVTNEGTTSTLTMNPVSFGNE--HSYLCTA   73 (90)
T ss_dssp             ETTSCEEEEEEEESCSSC---EEEEEETTCCCCS----SEEEEETTEEEEEESSCCGGGC--SEEEEEE
T ss_pred             ECCCEEEEEEeccCCCCc---eEEEEecCcccee----eeeeeecCCcEEEEeccccccc--ceEEEEE
Confidence            369999999998544333   3569887744322    3455556788899999988875  3344443

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.06  E-value=0.0025  Score=37.98  Aligned_cols=63  Identities=16%  Similarity=0.195  Sum_probs=42.4

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc---CccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS---SGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp---sGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .|..|.++.|.|.+..+-...   .+|++++..|.+    +.++.+..   ++-|.|++++..|.  ..-+|.++
T Consensus        13 ~v~~G~~~~l~c~~~g~P~p~---v~W~~~~~~i~~----~~~~~~~~~~~~~~L~I~~~~~~D~--G~Y~c~a~   78 (93)
T d1wiua_          13 KIKAGFTHNLEVDFIGAPDPT---ATWTVGDSGAAL----APELLVDAKSSTTSIFFPSAKRADS--GNYKLKVK   78 (93)
T ss_dssp             EECSSBCCEEEEEEECCSSCE---EEEECSSSSCBC----STTSEEEEETTEEEEECTTBCGGGC--EEEEEEEE
T ss_pred             EEeCCCeEEEEEEEEEecCCe---EEEEeeeeecee----eeeeeecccccceeecccccccccc--EEEEEEEE
Confidence            566899999999986554433   579999976654    33443432   44688888888764  45566553

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=95.00  E-value=0.013  Score=34.67  Aligned_cols=48  Identities=15%  Similarity=0.293  Sum_probs=31.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeec
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSIT   78 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~   78 (98)
                      -|+.|.+++|.|.++.......  ..|..++..+..           .++.|.|.++..+|
T Consensus        16 ~v~~G~~vtL~C~~~~~~~~~~--~~~~~~~~~~~~-----------~~~~l~i~~~~~~d   63 (84)
T d1fnla1          16 SVLEKDSVTLKCQGAYSPEDNS--TQWFHNESLISS-----------QASSYFIDAATVND   63 (84)
T ss_dssp             EEETTCCEEEEEECCCBTTBCC--CEEEETTEEEES-----------SCSEEEESSCCGGG
T ss_pred             EEeCCCeEEEEEEeccCCCCeE--EEEeeeceeeee-----------cceeeEecCCcccC
Confidence            5778999999999877665543  456666544432           23457777766654

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.00  E-value=0.031  Score=34.63  Aligned_cols=68  Identities=18%  Similarity=0.284  Sum_probs=44.3

Q ss_pred             ceeeeceEEEEeeeeceeecCeEEEEccCCCCccceeEEeEEccCC-----ee-eecC----cCCCceEEEccCc---cE
Q psy5692           3 PVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VN-IYLN----TDTGGKYVVLSSG---DL   69 (98)
Q Consensus         3 AVV~Q~Yev~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~-I~p~----~~~dgKY~vlpsG---eL   69 (98)
                      -||+||=  .+.    |-.|.++.|.|....+..+++   .|.+-.     .. |+-.    ....++|.+..++   .|
T Consensus         2 ~vltQp~--s~~----~~~G~svtL~C~~s~~~~~~~---~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L   72 (106)
T d1lk3l1           2 TVLTQPP--ALT----VSPGEKLTISCKASESVTSRM---HWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTL   72 (106)
T ss_dssp             CCEECCS--EEE----ECTTSCEEEEEEESSCCTTCE---EEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEE
T ss_pred             ccEeeCC--eEE----ECCCCCEEEEEEeCCCCCccE---EEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEe
Confidence            3788872  233    348999999999887777664   676542     22 3221    1235588877654   78


Q ss_pred             EEEeEeeecC
Q psy5692          70 YVQIRLSITG   79 (98)
Q Consensus        70 ~Ir~v~~~~~   79 (98)
                      .|++++.+|.
T Consensus        73 ~I~~~~~~Ds   82 (106)
T d1lk3l1          73 TIDPVEADDT   82 (106)
T ss_dssp             EESSCCGGGC
T ss_pred             EECCcChhhC
Confidence            8888887763

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.80  E-value=0.0022  Score=38.29  Aligned_cols=60  Identities=23%  Similarity=0.183  Sum_probs=41.1

Q ss_pred             EEeeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeec
Q psy5692          12 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSIT   78 (98)
Q Consensus        12 ~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~   78 (98)
                      ...+. .|..|..+.|.|.+..+-.   ....|.+++..+.+.   ...+....++.|.|.++..+|
T Consensus         8 ~~~~~-~v~~G~~v~l~C~~~g~P~---p~v~W~~~~~~~~~~---~~~~~~~~~~~L~i~~~~~~d   67 (92)
T d2ifga1           8 QVPNA-SVDVGDDVLLRCQVEGRGL---EQAGWILTELEQSAT---VMKSGGLPSLGLTLANVTSDL   67 (92)
T ss_dssp             ECCSS-CCBTTCCEEEEEEEECSSC---CCCCEEESCCCSSEE---ECCCCCSSEEEEEEESCCSTT
T ss_pred             eCCCE-EEeCCCEEEEeeeccCCCC---cEEEEEECCceeeee---eeeeeeccceeEEEccccccc
Confidence            34455 6789999999999854433   235799998655442   233344567789999988876

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.74  E-value=0.014  Score=35.28  Aligned_cols=69  Identities=14%  Similarity=0.196  Sum_probs=40.1

Q ss_pred             ceeecCeEEEEccCCCC--ccceeEEeEEccCC------eeeecC----------cCCCceEEEc--c---CccEEEEeE
Q psy5692          18 NVILGNTAVLRCQIPSY--MSEYIIVTSWIQDD------VNIYLN----------TDTGGKYVVL--S---SGDLYVQIR   74 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~--V~d~V~V~SW~~Dd------~~I~p~----------~~~dgKY~vl--p---sGeL~Ir~v   74 (98)
                      .++.|.+|+|.|.+.+.  ..+.. ..+|.+..      ..++..          ....||....  +   +..|.|+|+
T Consensus        10 ~a~~G~~v~L~C~~~~~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   88 (119)
T d1neua_          10 YGAVGSQVTLHCSFWSSEWVSDDI-SFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNL   88 (119)
T ss_dssp             EEETTSCEEECCEEECSSCCCSCC-EEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEECSC
T ss_pred             EEeeCCCEEEEEEEEecCCCCccE-EEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEEECCC
Confidence            45689999999986322  22333 35586521      122210          1234677654  2   246999999


Q ss_pred             eeecCCcceeeeeeh
Q psy5692          75 LSITGNLSVKKMKVE   89 (98)
Q Consensus        75 ~~~~~n~~~~~~~~~   89 (98)
                      +..|.  ..=.|.++
T Consensus        89 ~~~Ds--G~Y~C~v~  101 (119)
T d1neua_          89 DYSDN--GTFTCDVK  101 (119)
T ss_dssp             CGGGC--EEEEEEEE
T ss_pred             ChHHC--EEEEEEEE
Confidence            98885  34456554

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.63  E-value=0.0049  Score=37.64  Aligned_cols=61  Identities=7%  Similarity=0.024  Sum_probs=34.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc---------CccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS---------SGDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp---------sGeL~Ir~v~~~~~   79 (98)
                      .|..|-+|+|.|.+...-..---...|++++..+.+.. .+.++.+..         ...|.|++++..|.
T Consensus        11 ~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   80 (113)
T d2dava1          11 TVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASK-AGKHLQLKETFERHSRVYTFEMQIIKAKDNFA   80 (113)
T ss_dssp             EEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHH-TTSSEEEEEEEETTTTEEEEEEEECSCCTTSC
T ss_pred             EEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccc-cceeeeeccceeeEeecCEEEEEEccCCHHHC
Confidence            57789999999997533211112457999873322211 122332211         23588888877654

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.60  E-value=0.0039  Score=37.92  Aligned_cols=60  Identities=17%  Similarity=0.279  Sum_probs=39.1

Q ss_pred             eeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEcc----C---ccEEEEeEeeec
Q psy5692          14 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS----S---GDLYVQIRLSIT   78 (98)
Q Consensus        14 ~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlp----s---GeL~Ir~v~~~~   78 (98)
                      ... .|..|..|.|.|.+-+.-..  ....|.+++..|.+..  .++|.+..    +   ..|.|.+++.+|
T Consensus        14 ~~~-~~~~G~~~~l~C~v~~~~p~--~~v~W~~~~~~i~~~~--~~~~~~~~~~~~~~~~s~L~I~~v~~~D   80 (115)
T d2crya1          14 QTQ-HALHGEKGQIKCFIRSTPPP--DRIAWSWKENVLESGT--SGRYTVETISTEEGVISTLTISNIVRAD   80 (115)
T ss_dssp             CCC-CCCTTSCCCCCEEECCSSCC--SEEEEESSSCEECSEE--ETTEEEEEEEETTEEEEEEECTTCCHHH
T ss_pred             CCE-EEecCCEEEEEEEeecCCCe--eEEEEeeeeeeEeeee--eeeEeeeeeccccCcEEEEEEeccchhc
Confidence            455 78899999999998643222  2457999886664422  34555432    1   148888888876

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.51  E-value=0.039  Score=33.46  Aligned_cols=67  Identities=18%  Similarity=0.268  Sum_probs=37.8

Q ss_pred             ceeecCeEEEEccCC--CCccceeEEeEEccCC----eeeec-Cc--------CCCceEEEcc------CccEEEEeEee
Q psy5692          18 NVILGNTAVLRCQIP--SYMSEYIIVTSWIQDD----VNIYL-NT--------DTGGKYVVLS------SGDLYVQIRLS   76 (98)
Q Consensus        18 ~VirGNtAVLkC~IP--s~V~d~V~V~SW~~Dd----~~I~p-~~--------~~dgKY~vlp------sGeL~Ir~v~~   76 (98)
                      .|..|.+|+|.|.+.  +...++.  +.|.+.+    ..++. +.        ...+|.....      +..|.|++++.
T Consensus        13 ~~~~G~~v~L~C~~~~~~~~~~~~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~   90 (126)
T d1pkoa_          13 RALVGDEAELPCRISPGKNATGME--VGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRF   90 (126)
T ss_dssp             EEETTSCEEEEEEEESCCCCTTSE--EEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCG
T ss_pred             EEEcCCcEEEEEEEECcCCCCceE--EEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEch
Confidence            455899999999873  2333332  4576654    22221 11        1234444432      35799999999


Q ss_pred             ecCCcceeeeee
Q psy5692          77 ITGNLSVKKMKV   88 (98)
Q Consensus        77 ~~~n~~~~~~~~   88 (98)
                      +|+  ..=.|.+
T Consensus        91 ~D~--G~Y~C~v  100 (126)
T d1pkoa_          91 SDE--GGYTCFF  100 (126)
T ss_dssp             GGC--EEEEEEE
T ss_pred             hHC--eEEEEEE
Confidence            884  3444444

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.48  E-value=0.005  Score=37.21  Aligned_cols=67  Identities=18%  Similarity=0.118  Sum_probs=42.6

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecC-------------------------cCCCceEEEccCc---cE
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-------------------------TDTGGKYVVLSSG---DL   69 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~-------------------------~~~dgKY~vlpsG---eL   69 (98)
                      .|..|.++.|.|.+.++-...   ..|.+++..+...                         ...++|+.+..++   .|
T Consensus        20 ~v~~G~~v~L~C~v~G~P~p~---i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L   96 (130)
T d1gxea_          20 VVVAGNKLRLDVPISGDPAPT---VIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIF   96 (130)
T ss_dssp             EESSSSCCCCEEECCSBSCCE---EEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEEEE
T ss_pred             EEEcCCeEEEEEEEEEecCCe---EEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCEEEE
Confidence            466899999999997665543   4688765333211                         1224566665433   49


Q ss_pred             EEEeEeeecCCcceeeeeeh
Q psy5692          70 YVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        70 ~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .|++++.+|.  ..-.|.++
T Consensus        97 ~I~~v~~~D~--G~Y~C~a~  114 (130)
T d1gxea_          97 TVEGAEKEDE--GVYTVTVK  114 (130)
T ss_dssp             ECSCCCTTTC--EEEEEEEE
T ss_pred             EECcCChhcC--EEEEEEEE
Confidence            9999888774  55566554

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.40  E-value=0.021  Score=36.25  Aligned_cols=70  Identities=17%  Similarity=0.191  Sum_probs=41.8

Q ss_pred             cceeeeceEEEEeeeeceeecCeEEEEccCCCCc--cceeEEeEEcc---CC---eeeecCc----CCCceEEEcc---C
Q psy5692           2 LPVVKQKYEINVNYEHNVILGNTAVLRCQIPSYM--SEYIIVTSWIQ---DD---VNIYLNT----DTGGKYVVLS---S   66 (98)
Q Consensus         2 rAVV~Q~Yev~V~d~~~VirGNtAVLkC~IPs~V--~d~V~V~SW~~---Dd---~~I~p~~----~~dgKY~vlp---s   66 (98)
                      .|||.|+=.  +    .|..|.+|.|.|.+.+..  .++.  ..|.+   +.   ..||-..    ...+||.+.-   +
T Consensus         1 q~~~tQ~~s--l----svs~G~tvtl~C~~s~~~~~~~~~--v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~   72 (110)
T d1oaql_           1 QAVVTQESA--L----TTSPGETVTLTCRSSTGAVTTSNY--ANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNK   72 (110)
T ss_dssp             CCCEEECSE--E----EECTTCEEEEEEEETTBCCCGGGC--CEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTE
T ss_pred             CCCEeeCCC--E----EeCCCCCEEEEEEEcCCCCcceee--eEEEEeecccceeeeeeeeceeccccceeeeecccccc
Confidence            378888632  2    345899999999875432  3332  55876   33   3334322    1246776642   4


Q ss_pred             ccEEEEeEeeecC
Q psy5692          67 GDLYVQIRLSITG   79 (98)
Q Consensus        67 GeL~Ir~v~~~~~   79 (98)
                      .-|.|++++.+|.
T Consensus        73 ~~L~I~~~~~~Ds   85 (110)
T d1oaql_          73 AALTITGAQTEDE   85 (110)
T ss_dssp             EEEEEESCCGGGC
T ss_pred             eeeecCCCCcccc
Confidence            4577888887774

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.25  E-value=0.031  Score=33.40  Aligned_cols=70  Identities=21%  Similarity=0.221  Sum_probs=41.4

Q ss_pred             ceeecCeEEEEccCCCCcc-ceeEEeEEccC--Ce------ee-------ecC--cCCCceEEEcc------CccEEEEe
Q psy5692          18 NVILGNTAVLRCQIPSYMS-EYIIVTSWIQD--DV------NI-------YLN--TDTGGKYVVLS------SGDLYVQI   73 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~-d~V~V~SW~~D--d~------~I-------~p~--~~~dgKY~vlp------sGeL~Ir~   73 (98)
                      .+.+|.+|+|.|.+++... .......|.+.  +.      .+       ++.  ....||..+.+      +..|.|++
T Consensus        15 ~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~   94 (124)
T d1eaja_          15 EKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTN   94 (124)
T ss_dssp             EEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEECS
T ss_pred             EEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEEcc
Confidence            3458999999999743322 23344567652  11      11       111  12346777653      24799999


Q ss_pred             EeeecCCcceeeeeeh
Q psy5692          74 RLSITGNLSVKKMKVE   89 (98)
Q Consensus        74 v~~~~~n~~~~~~~~~   89 (98)
                      ++..|.  ..=.|.+.
T Consensus        95 v~~~D~--G~Y~C~v~  108 (124)
T d1eaja_          95 LQLSDI--GTYQCKVK  108 (124)
T ss_dssp             CCGGGC--EEEEEEEE
T ss_pred             cEEccC--EEEEEEEE
Confidence            999874  55666665

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=93.96  E-value=0.01  Score=35.40  Aligned_cols=66  Identities=14%  Similarity=0.109  Sum_probs=35.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCc---------eEEE---ccCccEEEEeEeeecCCcceee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGG---------KYVV---LSSGDLYVQIRLSITGNLSVKK   85 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dg---------KY~v---lpsGeL~Ir~v~~~~~n~~~~~   85 (98)
                      .|..|.+|.|.|.+.+.-.-.   ..|+++..........++         ....   ...+.|.|++++..|.  ..-.
T Consensus        16 tv~~G~~v~l~C~v~g~P~p~---v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~--G~Y~   90 (109)
T d2fdbp2          16 STVVGGDVEFVCKVYSDAQPH---IQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDA--GEYT   90 (109)
T ss_dssp             EECTTCCEEEEEEEECSSCCE---EEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCGGGC--EEEE
T ss_pred             EEecCCcEEEEEEEEEcCCCe---EEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCHHHC--eEEE
Confidence            577899999999986554433   468876421100000011         1111   1246789988877764  3444


Q ss_pred             eee
Q psy5692          86 MKV   88 (98)
Q Consensus        86 ~~~   88 (98)
                      |.+
T Consensus        91 C~a   93 (109)
T d2fdbp2          91 CLA   93 (109)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.96  E-value=0.046  Score=31.89  Aligned_cols=39  Identities=13%  Similarity=0.129  Sum_probs=26.7

Q ss_pred             EEEEeeeeceeecCeEEEEccCCCCccceeEEeEEccCCeee
Q psy5692          10 EINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI   51 (98)
Q Consensus        10 ev~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I   51 (98)
                      .+.+...-.|+.|.++.|.|.+.+.-.-   ..+|.+++..+
T Consensus         2 ~it~~~~~~v~~G~~~~L~C~~~g~p~P---~i~W~~~~~~~   40 (84)
T d2nxyb2           2 GLTANSDTHLLQGQSLTLTLESPPGSSP---SVQCRSPRGKN   40 (84)
T ss_dssp             EEEESCSSCEETTCCEEEEEECCTTCCC---EEEEECTTCCE
T ss_pred             eEcCCCCeEEECCCeEEEEEEeEcCCch---heEEEeecccc
Confidence            3444433378999999999998765543   44599887443

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.84  E-value=0.013  Score=34.95  Aligned_cols=61  Identities=7%  Similarity=0.135  Sum_probs=37.7

Q ss_pred             ecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          21 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        21 rGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .|.+++|.|.+.+.-   .-...|.+++..|..+  .+.++....+.-|.|+.++.+|.  ..-.|.+
T Consensus        21 ~~~~v~l~C~~~g~P---~p~v~W~~ng~~i~~~--~~~~~~~~~~~~l~i~~~~~~d~--G~Y~C~a   81 (97)
T d1cs6a1          21 AEEKVTLTCRARANP---PATYRWKMNGTELKMG--PDSRYRLVAGDLVISNPVKAKDA--GSYQCVA   81 (97)
T ss_dssp             SCCEEEECCEEEEES---CCEEEEEETTEECCCS--TTSSEEEETTEEEEESCCHHHHC--EEEEEEE
T ss_pred             CCCeEEEEEEEEEeC---CCEEEEEEeeeeccCC--CCceEEeeeeeEEEEecccccCC--EEEEEEE
Confidence            457999999974332   2345899999777442  34555555555566666766653  3445544

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.60  E-value=0.02  Score=33.62  Aligned_cols=56  Identities=13%  Similarity=0.176  Sum_probs=34.5

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKV   88 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~   88 (98)
                      .|..|.++.|.|.++..-..  ....|.+++..+..           .++.|.|.+++.+|.  ..-.|..
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~--~~~~~~~~~~~~~~-----------~~~~l~i~~v~~~d~--G~Y~C~a   67 (82)
T d1f2qa1          12 RIFKGENVTLTCNGNNFFEV--SSTKWFHNGSLSEE-----------TNSSLNIVNAKFEDS--GEYKCQH   67 (82)
T ss_dssp             EEETTCCEEEECCTTCC------CCEEEETTEECSC-----------CSSEEEECSCCGGGC--EEEEEEC
T ss_pred             EEeCCCeEEEEEEEeeeeee--cceeeeeeeeeeec-----------ccceeEECCCChhhC--CcEEEEe
Confidence            57789999999998765443  34568888755421           234577777666653  4445544

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.41  E-value=0.1  Score=31.79  Aligned_cols=40  Identities=10%  Similarity=0.232  Sum_probs=29.1

Q ss_pred             EeeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeeec
Q psy5692          13 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYL   53 (98)
Q Consensus        13 V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p   53 (98)
                      .... .|..|.++.|.|.+...-..=...+.|++|+..|.+
T Consensus         9 ~~p~-~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~   48 (106)
T d1zxqa1           9 LQPT-LVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHY   48 (106)
T ss_dssp             EESS-EECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEE
T ss_pred             CCCC-EEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeee
Confidence            3344 677899999999986443334456799999977754

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.94  E-value=0.015  Score=35.81  Aligned_cols=65  Identities=14%  Similarity=0.141  Sum_probs=37.7

Q ss_pred             ceeecCeEEEEccCCCC-ccceeEEeEEccCCeeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~-V~d~V~V~SW~~Dd~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .|..|-.+.|.|.++.. -... ..++|.+++..+......+.    .-+..|.|+.++..  +...-.|..+
T Consensus        15 ~v~~G~~~~L~C~v~g~~P~p~-~~v~W~~~~~~l~~~~~~~~----~~~s~l~i~~~~~d--d~g~ytC~A~   80 (103)
T d1iama1          15 WQPVGKQLTLRCQVEGGAPRAQ-LTVVLLRGEKELKREPAVGE----PAEVTTTVLVRRDH--HGAQFSCRTE   80 (103)
T ss_dssp             EECTTSEEEEEEEEECCBCGGG-EEEEEEETTEEEEEEECCTT----TEEEEEEEECCSSC--SSCEEEEEEE
T ss_pred             eEeCCCEEEEEEEecCCCCCCc-eEEEEccccccccccccccc----cceEEEEEeeehhH--CCCEEEEEEE
Confidence            56689999999998743 2222 23579999977754221111    12345666654433  4445666553

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=92.60  E-value=0.059  Score=34.01  Aligned_cols=58  Identities=24%  Similarity=0.446  Sum_probs=37.3

Q ss_pred             ecCeEEEEccCC--CCccceeEEeEEccCC------eeeecCcCCCceEEEc-cCc----cEEEEeEeeecCCcceeeee
Q psy5692          21 LGNTAVLRCQIP--SYMSEYIIVTSWIQDD------VNIYLNTDTGGKYVVL-SSG----DLYVQIRLSITGNLSVKKMK   87 (98)
Q Consensus        21 rGNtAVLkC~IP--s~V~d~V~V~SW~~Dd------~~I~p~~~~dgKY~vl-psG----eL~Ir~v~~~~~n~~~~~~~   87 (98)
                      .|.++.|.|.+.  ++-.+++   .|.+-.      ..|+    .+|||... +++    .|.|++++.+|.  ++=-|.
T Consensus        13 ~G~svtl~C~~s~~s~~~~~i---~WYrq~~g~~~~~~~~----~~gr~~~~~~~~~~~~~L~I~~l~~~Ds--a~YyCA   83 (112)
T d1sq2n_          13 TGESLTINCVLRDASYALGST---CWYRKKSGEGNEESIS----KGGRYVETVNSGSKSFSLRINDLTVEDG--GTYRCG   83 (112)
T ss_dssp             TTCCEEEEEEECSCSSCCCCE---EEEEEETTSCCCEECC----CBTTEEEEEETTTTEEEEEECSCCGGGC--EEEEEE
T ss_pred             CCCCEEEEEEECCCcccCCce---EEEEeeccceeeeeec----cCCcEeeEEecCCceeeeEecCCcCccC--EEEeEE
Confidence            799999999763  4444554   688732      3333    36788764 443    588999888773  444443

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.52  E-value=0.18  Score=31.23  Aligned_cols=66  Identities=8%  Similarity=0.227  Sum_probs=41.3

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccC---C--eee--ec-C---cCCCceEEEc--cCc---cEEEEeEeeecCCcc
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQD---D--VNI--YL-N---TDTGGKYVVL--SSG---DLYVQIRLSITGNLS   82 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~D---d--~~I--~p-~---~~~dgKY~vl--psG---eL~Ir~v~~~~~n~~   82 (98)
                      |-+|.+|.|.|.......++.  ..|.+-   .  ..|  +. +   ...++||.+.  +++   .|.|.+++.+|  ++
T Consensus        11 v~~G~~vtl~C~~~~~~~~~~--~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~D--sg   86 (114)
T d3bp5a1          11 VSEGANATFTCSLSNWSEDLM--LNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRND--SG   86 (114)
T ss_dssp             EETTCCEEEEEEESCCCTTCE--EEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGG--CE
T ss_pred             ECCCCCEEEEEEECCCCCcce--EEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcCC--Ce
Confidence            458999999999876665553  467752   1  222  11 1   1357788875  443   28888888877  45


Q ss_pred             eeeeee
Q psy5692          83 VKKMKV   88 (98)
Q Consensus        83 ~~~~~~   88 (98)
                      +=-|-+
T Consensus        87 ~YyCa~   92 (114)
T d3bp5a1          87 IYLCGA   92 (114)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            555543

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.12  E-value=0.21  Score=30.03  Aligned_cols=67  Identities=15%  Similarity=0.276  Sum_probs=40.6

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCC-----ee-eecC----cCCCceEEEc--cC-c--cEEEEeEeeecCCcce
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VN-IYLN----TDTGGKYVVL--SS-G--DLYVQIRLSITGNLSV   83 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~-I~p~----~~~dgKY~vl--ps-G--eL~Ir~v~~~~~n~~~   83 (98)
                      +..|-++.|.|..++...++..+ .|.+..     .. ++..    ....+|+.+.  |+ |  -|.|.|++.+|.  .+
T Consensus         8 ~~~G~svtl~C~~~~~~~~~~~~-~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~Ds--G~   84 (108)
T d1hkfa_           8 SVAGQTLTVRCQYPPTGSLYEKK-GWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDS--GH   84 (108)
T ss_dssp             ECTTCCEEEEEECCCCTTCCCEE-EEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGC--EE
T ss_pred             EcCCCCEEEEEEECCCCCCCCEE-EEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCC--EE
Confidence            45899999999998776665443 476532     12 2221    1235777664  33 2  488889988773  44


Q ss_pred             eeeee
Q psy5692          84 KKMKV   88 (98)
Q Consensus        84 ~~~~~   88 (98)
                      =-|.+
T Consensus        85 Y~C~v   89 (108)
T d1hkfa_          85 YWCRI   89 (108)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44444

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.69  E-value=0.37  Score=29.57  Aligned_cols=69  Identities=14%  Similarity=0.040  Sum_probs=39.1

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-e---ee--ecCc------CCCceEE--EccCc---cEEEEeEeeecCC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-V---NI--YLNT------DTGGKYV--VLSSG---DLYVQIRLSITGN   80 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-~---~I--~p~~------~~dgKY~--vlpsG---eL~Ir~v~~~~~n   80 (98)
                      .|..|.+|.|.|.++....+.-....|.+.. .   .+  +.+.      ...+|+.  ..+++   .|.|.+++.+|  
T Consensus        11 ~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D--   88 (118)
T d1yjdc1          11 LVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQ--   88 (118)
T ss_dssp             EECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGG--
T ss_pred             EEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCccc--
Confidence            3457999999999876654333334587765 1   12  1111      1123333  33443   59999988877  


Q ss_pred             cceeeeee
Q psy5692          81 LSVKKMKV   88 (98)
Q Consensus        81 ~~~~~~~~   88 (98)
                      +++==|.+
T Consensus        89 savYyCa~   96 (118)
T d1yjdc1          89 TDIYFCKI   96 (118)
T ss_dssp             CEEEEEEE
T ss_pred             CeEEEEEE
Confidence            34444443

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=90.40  E-value=0.24  Score=30.46  Aligned_cols=60  Identities=17%  Similarity=0.190  Sum_probs=35.3

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCC------eeeecC----cCCCceEEEccCc---cEEEEeEeeec
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIYLN----TDTGGKYVVLSSG---DLYVQIRLSIT   78 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd------~~I~p~----~~~dgKY~vlpsG---eL~Ir~v~~~~   78 (98)
                      |-.|.++.|.|.+.+++..--....|.+-.      ..++..    ....+++....++   -|.|++++.+|
T Consensus        12 ~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   84 (112)
T d1lgva1          12 GSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAED   84 (112)
T ss_dssp             ECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGG
T ss_pred             ECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCcccc
Confidence            448999999999876653222234688732      222211    1224566555433   38888887765

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.96  E-value=0.3  Score=29.62  Aligned_cols=68  Identities=7%  Similarity=0.027  Sum_probs=40.3

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeecCc-----CCCceEEEccCccEEEEeEeeecCCcceeeeeeh
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT-----DTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVE   89 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~-----~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~   89 (98)
                      .++.|-.++|.|.++...-.-.-.++|..++..+.+..     ...|.+.+.  ..|.+. ... ..|.....|.++
T Consensus        12 ~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~--s~l~~~-~~~-~D~g~~ltC~a~   84 (109)
T d1vcaa1          12 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKS--LEVTFT-PVI-EDIGKVLVCRAK   84 (109)
T ss_dssp             CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEE--EEEEEC-CCG-GGTTCEEEEEEE
T ss_pred             CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceee--EEEEcc-CCh-HHCCcEEEEEEE
Confidence            67899999999998755444445678999886664321     234445432  123332 222 345556666654

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.90  E-value=0.16  Score=31.45  Aligned_cols=59  Identities=20%  Similarity=0.198  Sum_probs=36.4

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCC--------eeeecCc--------CCCceEEEccCc---cEEEEeEeeecC
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD--------VNIYLNT--------DTGGKYVVLSSG---DLYVQIRLSITG   79 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd--------~~I~p~~--------~~dgKY~vlpsG---eL~Ir~v~~~~~   79 (98)
                      +-.|.++.|.|.+...-...  ...|.+-.        ..||...        ...+||.+..++   .|.|++++.+|.
T Consensus        12 ~~~G~~vtL~C~~~~~~~~~--~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~l~~~Ds   89 (114)
T d1akjd_          12 WNLGETVELKCQVLLSNPTS--GCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENE   89 (114)
T ss_dssp             CCTTCCEEEEEEECCSSCCS--CEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             ccCCCcEEEEEEeCCCcCCC--CEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEccCCCCCC
Confidence            34699999999876543322  23676622        1333322        124678777655   489999988874

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=89.90  E-value=0.29  Score=30.25  Aligned_cols=55  Identities=16%  Similarity=0.207  Sum_probs=33.2

Q ss_pred             eecCeEEEEccCCCCc-cceeEEeEEccC--C---eeeecCcCCCceEEEc-cC----ccEEEEeEeeecC
Q psy5692          20 ILGNTAVLRCQIPSYM-SEYIIVTSWIQD--D---VNIYLNTDTGGKYVVL-SS----GDLYVQIRLSITG   79 (98)
Q Consensus        20 irGNtAVLkC~IPs~V-~d~V~V~SW~~D--d---~~I~p~~~~dgKY~vl-ps----GeL~Ir~v~~~~~   79 (98)
                      -.|.++.|.|...... ..+  ...|.+-  .   ..++.   .++++.+. .+    -.|.|++++.+|.
T Consensus        13 ~~G~svtL~C~~s~~~~~~~--~~~Wyrq~~g~~~~~~~~---~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   78 (113)
T d1vesa_          13 ETGESLTINCVLRDASFELK--DTGWYRTKLGSTNEQSIS---IGGRYVETVNKGSKSFSLRISDLRVEDS   78 (113)
T ss_dssp             CTTCCEEEEEEEESCSSCCC--EEEEEEEETTCCCCEECC---CBTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             cCCCCEEEEEEECCCcccCC--ccceeeeeccccceeeee---ecccccceeECCCCceeeeecccccCCc
Confidence            3799999999875432 223  3457652  1   22222   35677664 22    2588899888874

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=89.85  E-value=0.34  Score=30.23  Aligned_cols=66  Identities=24%  Similarity=0.302  Sum_probs=38.6

Q ss_pred             eeeeceEEEEeeeeceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-ecCc----CCCceEEEccCc---cEE
Q psy5692           4 VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLNT----DTGGKYVVLSSG---DLY   70 (98)
Q Consensus         4 VV~Q~Yev~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~p~~----~~dgKY~vlpsG---eL~   70 (98)
                      |++||=  .+    .|..|.+|.|.|...++..+++   .|.+-.     ..| +...    ...+++...-++   .|.
T Consensus         3 VltQp~--sl----~~~~G~svtl~C~~~~~~~~~i---~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~   73 (109)
T d1w72l1           3 VLTQPP--SV----SVAPGQTARITCGGNNIGSRSV---HWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLT   73 (109)
T ss_dssp             CCBCCS--EE----EECTTSCEEEEEECTTGGGSCC---EEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEE
T ss_pred             ceeeCC--eE----EECCCCCEEEEEEcCCCCCcce---eeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceE
Confidence            677762  22    3347999999999776665654   466432     223 2211    124566554443   567


Q ss_pred             EEeEeeec
Q psy5692          71 VQIRLSIT   78 (98)
Q Consensus        71 Ir~v~~~~   78 (98)
                      |.+++.+|
T Consensus        74 I~~l~~~D   81 (109)
T d1w72l1          74 ISRVEAGD   81 (109)
T ss_dssp             ESSCCGGG
T ss_pred             EeeeccCC
Confidence            88887665

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=89.55  E-value=0.42  Score=29.33  Aligned_cols=69  Identities=16%  Similarity=0.145  Sum_probs=40.7

Q ss_pred             ceeeeceEEEEeeeeceeecCeEEEEccCCCCc-cceeEEeEEccCC-----eeeec-C----cCCCceEEEccC---cc
Q psy5692           3 PVVKQKYEINVNYEHNVILGNTAVLRCQIPSYM-SEYIIVTSWIQDD-----VNIYL-N----TDTGGKYVVLSS---GD   68 (98)
Q Consensus         3 AVV~Q~Yev~V~d~~~VirGNtAVLkC~IPs~V-~d~V~V~SW~~Dd-----~~I~p-~----~~~dgKY~vlps---Ge   68 (98)
                      .|+.||=  .+    .|-.|.+|.|.|...+.. .++.  ..|.+-.     ..|+- .    ....+|+.+..+   ..
T Consensus         2 ~vltQp~--s~----~v~~G~svtl~C~~s~~~~~~~~--~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~   73 (111)
T d1rzfl1           2 SILTQPP--SV----SAAPGQKVTISCSGSSSNIGNND--VSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSAT   73 (111)
T ss_dssp             CSBBCCS--EE----EECTTSCEEEEEECCCCCCCTSC--EEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEE
T ss_pred             CceeeCc--ce----EeCCCCCEEEEEEECCcCCcCCc--ccceeeecccceEEEeeecCCCccccccceeeeCCCCEee
Confidence            4678862  22    344899999999876543 3433  5676442     32321 1    123457777554   45


Q ss_pred             EEEEeEeeecC
Q psy5692          69 LYVQIRLSITG   79 (98)
Q Consensus        69 L~Ir~v~~~~~   79 (98)
                      |.|++++.+|.
T Consensus        74 L~I~~~~~~Ds   84 (111)
T d1rzfl1          74 LGITGLQTGDE   84 (111)
T ss_dssp             EEESSCCGGGC
T ss_pred             eEEeeeccccC
Confidence            88888887763

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=89.53  E-value=0.28  Score=30.04  Aligned_cols=58  Identities=14%  Similarity=0.291  Sum_probs=35.4

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCC------eeeecCcC----CCceEEEcc-----CccEEEEeEeeecC
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIYLNTD----TGGKYVVLS-----SGDLYVQIRLSITG   79 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd------~~I~p~~~----~dgKY~vlp-----sGeL~Ir~v~~~~~   79 (98)
                      |..|.+|.|.|..+.+-.++   ..|.+-.      ..++....    ..+||.+.-     +..|.|++++.+|.
T Consensus        12 ~~~G~~vtL~C~~~~~~~~~---~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Ds   84 (114)
T d2cdea1          12 ILEGKNCTLQCNYTVSPFSN---LRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDS   84 (114)
T ss_dssp             EETTCCCEEEEEECCSCCSE---EEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGC
T ss_pred             EeCCCCEEEEEEEcCCCccC---ceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhC
Confidence            45799999999988765555   4687522      22332211    245676643     23388888877763

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.97  E-value=0.082  Score=32.04  Aligned_cols=69  Identities=10%  Similarity=0.125  Sum_probs=40.2

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCC-----eee-ecC----cCCCceEEEccC-----ccEEEEeEeeecCCcce
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN----TDTGGKYVVLSS-----GDLYVQIRLSITGNLSV   83 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~p~----~~~dgKY~vlps-----GeL~Ir~v~~~~~n~~~   83 (98)
                      +..|.+++|.|..++....-.....|.+..     ..+ +..    ....||+.+..+     ..|-|++++.+|.  ++
T Consensus        11 ~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~Ds--G~   88 (116)
T d1xeda_          11 SVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDS--GR   88 (116)
T ss_dssp             EETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGGC--EE
T ss_pred             EcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcCCC--EE
Confidence            347999999999865433322334576542     122 211    123567765422     3588999988874  55


Q ss_pred             eeeeeh
Q psy5692          84 KKMKVE   89 (98)
Q Consensus        84 ~~~~~~   89 (98)
                      =.|.++
T Consensus        89 Y~C~v~   94 (116)
T d1xeda_          89 YKCGLG   94 (116)
T ss_dssp             EEEEES
T ss_pred             EEEEEE
Confidence            566664

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=88.81  E-value=0.43  Score=29.63  Aligned_cols=59  Identities=15%  Similarity=0.173  Sum_probs=36.1

Q ss_pred             eecCeEEEEccCCCCccceeEEeEEccCC---eeeecC----cCCCceEEEccCc---cEEEEeEeeec
Q psy5692          20 ILGNTAVLRCQIPSYMSEYIIVTSWIQDD---VNIYLN----TDTGGKYVVLSSG---DLYVQIRLSIT   78 (98)
Q Consensus        20 irGNtAVLkC~IPs~V~d~V~V~SW~~Dd---~~I~p~----~~~dgKY~vlpsG---eL~Ir~v~~~~   78 (98)
                      -.|.++.|.|...++..+++.-.-|....   ..|+..    .....++...++|   .|.|.+++.+|
T Consensus        14 ~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~D   82 (108)
T d1jhll_          14 SPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPED   82 (108)
T ss_dssp             CTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTC
T ss_pred             cCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEecc
Confidence            46999999999877666654333333332   222321    1124567666676   68888888776

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=88.42  E-value=0.34  Score=29.70  Aligned_cols=58  Identities=17%  Similarity=0.102  Sum_probs=33.9

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEcc-CC----eee-ecCcC-----C--CceEEEccC---ccEEEEeEeeecC
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQ-DD----VNI-YLNTD-----T--GGKYVVLSS---GDLYVQIRLSITG   79 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~-Dd----~~I-~p~~~-----~--dgKY~vlps---GeL~Ir~v~~~~~   79 (98)
                      |..|.+|.|.|..+.+...++   .|.+ .+    ..| +-...     .  ..++...++   ..|.|++++.+|.
T Consensus        12 v~~G~svtl~C~~~~~~~~~~---~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   85 (115)
T d1i9ea_          12 VSEGASLQLRCKYSYSATPYL---FWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDS   85 (115)
T ss_dssp             EETTSCEEECCEEECSSCCEE---EEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGC
T ss_pred             ECCCCCEEEEEEEcCCCCCCE---EEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEeccccccccc
Confidence            458999999999877766665   4665 21    223 21111     1  123333333   4688888887773

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=88.38  E-value=0.53  Score=29.09  Aligned_cols=56  Identities=13%  Similarity=0.123  Sum_probs=34.9

Q ss_pred             eecCeEEEEccCCCCccceeEEeEEccCC-----eee---ecCc-------CCCceEEEc-cCc---cEEEEeEeeec
Q psy5692          20 ILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI---YLNT-------DTGGKYVVL-SSG---DLYVQIRLSIT   78 (98)
Q Consensus        20 irGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I---~p~~-------~~dgKY~vl-psG---eL~Ir~v~~~~   78 (98)
                      -.|.+|.|.|....+-..   ...|.+-.     ..|   ++..       ...+||.+. +++   .|.|.+++.+|
T Consensus        14 ~~G~~v~L~C~~~~~~~~---~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~D   88 (118)
T d2ij0c1          14 KSGTSVKIECRSLDTNIH---TMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHPED   88 (118)
T ss_dssp             CTTCCEEEEEEECSSCCS---EEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCGGG
T ss_pred             cCCCCEEEEEEEcCCccc---EEEEEEEcccccceeeeeccccccceeccccccccceeecccccccccccccccccc
Confidence            379999999986655333   35788742     222   2211       135688875 443   48888887776

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.31  E-value=0.15  Score=30.11  Aligned_cols=58  Identities=19%  Similarity=0.106  Sum_probs=35.4

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCCeeeecCcCCCceE---EE-cc--------CccEEEEeEeeecCC
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKY---VV-LS--------SGDLYVQIRLSITGN   80 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p~~~~dgKY---~v-lp--------sGeL~Ir~v~~~~~n   80 (98)
                      |-.|.++.|.|.+...-..   -..|..++..|.... ...++   .. .+        .+.|.|.+++.+|..
T Consensus        14 v~~G~~v~l~C~v~g~P~p---~i~W~~~g~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g   83 (107)
T d1iray3          14 VDLGSQIQLICNVTGQLSD---IAYWKWNGSVIDEDD-PVLGEDYYSVENPANKRRSTLITVLNISEIESRFYK   83 (107)
T ss_dssp             CCTTCCEEEEEEEEECTTC---EEEEEETTEECCTTC-SSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGS
T ss_pred             EeCCCEEEEEEEeccCCCC---eEEEEECCccccccc-ceeeeeeeeeccceeeecccceEEEEEeecchHHCC
Confidence            3479999999998544443   346998886653321 11111   11 11        236999999988854

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=88.19  E-value=0.4  Score=29.43  Aligned_cols=60  Identities=12%  Similarity=0.139  Sum_probs=36.4

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCC----eeeecCc----CCCceEEEccCc---cEEEEeEeeecC
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD----VNIYLNT----DTGGKYVVLSSG---DLYVQIRLSITG   79 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd----~~I~p~~----~~dgKY~vlpsG---eL~Ir~v~~~~~   79 (98)
                      +-.|.+|.|.|...+..-.++. |-|...+    ..||...    ....++.+..++   .|.|.+++.+|.
T Consensus        13 ~~~G~svtL~C~~s~~~~~~~~-WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   83 (107)
T d1tjgl1          13 ASVGDRITITCRASQGVTSALA-WYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDF   83 (107)
T ss_dssp             ECTTCCEEEEEEESSCCTTCEE-EEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             ECCCCCEEEEEEECCCCCccEE-EEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcC
Confidence            4479999999998766655543 3333332    3334221    124577776544   388888888763

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.94  E-value=0.55  Score=29.63  Aligned_cols=57  Identities=19%  Similarity=0.388  Sum_probs=37.7

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccC---C--eeeecC-----cCCCceEEEccCc---cEEEEeEeeec
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQD---D--VNIYLN-----TDTGGKYVVLSSG---DLYVQIRLSIT   78 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~D---d--~~I~p~-----~~~dgKY~vlpsG---eL~Ir~v~~~~   78 (98)
                      |-.|.+|.|.|....+..+++   .|.+-   .  ..|+-.     .....+|...+++   .|.|++++.+|
T Consensus        13 ~~~G~svtl~C~~s~~~~~~i---~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~D   82 (119)
T d1f3rb2          13 ASVGDRVTLSCKGSQNINNYL---AWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPED   82 (119)
T ss_dssp             CCTTCCEEEEEECSSCCBTCE---EEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGG
T ss_pred             ECCCCCEEEEEEeCCCCccee---EEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCC
Confidence            447999999999887777774   56663   2  323211     1234577777665   48888887776

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.79  E-value=0.29  Score=30.05  Aligned_cols=31  Identities=26%  Similarity=0.593  Sum_probs=22.9

Q ss_pred             eecCeEEEEccCCCCccceeEEeEEccCCeee
Q psy5692          20 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI   51 (98)
Q Consensus        20 irGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I   51 (98)
                      +.++.++|.|.+..|--+-+. .+|..++..+
T Consensus        17 ~~~~~vtL~Clv~~f~P~~i~-v~W~~~g~~~   47 (105)
T d1fp5a2          17 GSRDKRTLACLIQNFMPEDIS-VQWLHNEVQL   47 (105)
T ss_dssp             SSSCCEEEEEEEEEEBSSCCE-EEEEETTEEC
T ss_pred             hcCCcEEEEEEEEeeeCCCcE-EEEEECCEEC
Confidence            357789999999776555554 5699988554

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.74  E-value=0.52  Score=27.44  Aligned_cols=36  Identities=14%  Similarity=0.142  Sum_probs=26.2

Q ss_pred             eeeeceeecCeEEEEccCCCCccceeEEeEEccCCeeee
Q psy5692          14 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIY   52 (98)
Q Consensus        14 ~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~   52 (98)
                      .+. .|.+|.++.|.|.+...-..  .-..|++|+..|-
T Consensus         9 ~~~-~v~~G~~~~l~C~~~g~P~P--~~i~W~k~g~~i~   44 (85)
T d1rhfa2           9 KDL-AVPPNAPFQLSCEAVGPPEP--VTIVWWRGTTKIG   44 (85)
T ss_dssp             CCE-EECTTCCEEEEEEEECSSSC--CEEEEEETTEECS
T ss_pred             CcE-EEcCCCEEEEEEEEecCCcc--eEEEEEECCEECC
Confidence            455 78899999999997544322  2468999997663

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.50  E-value=0.35  Score=29.77  Aligned_cols=36  Identities=17%  Similarity=0.136  Sum_probs=22.0

Q ss_pred             eeeceEEEEeeeeceeecCeEEEEccCCCC--ccceeEEeEEccCC
Q psy5692           5 VKQKYEINVNYEHNVILGNTAVLRCQIPSY--MSEYIIVTSWIQDD   48 (98)
Q Consensus         5 V~Q~Yev~V~d~~~VirGNtAVLkC~IPs~--V~d~V~V~SW~~Dd   48 (98)
                      |.||..+.      +-.|.+|.|.|...+.  ..++  -.+|.+..
T Consensus         3 vtQP~~~~------~~~g~~vtL~C~~~~~~~~~~~--~v~WyrQ~   40 (118)
T d1i8lc_           3 VAQPAVVL------ASSRGIASFVCEYASPGKATEV--RVTVLRQA   40 (118)
T ss_dssp             EECCSEEE------CCSSSCEEEEEEECCCSCCSEE--EEEEEEES
T ss_pred             EeCCCEEE------EeCCCcEEEEEEccccccccce--eEEEEEEC
Confidence            56665433      2378999999986433  2222  35588764

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=87.04  E-value=0.17  Score=30.80  Aligned_cols=43  Identities=23%  Similarity=0.512  Sum_probs=28.6

Q ss_pred             eecCeEEEEccCCCCccceeEEeEEccCCeeee------cCcCCCceEEE
Q psy5692          20 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIY------LNTDTGGKYVV   63 (98)
Q Consensus        20 irGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~------p~~~~dgKY~v   63 (98)
                      +.+++|.|.|.+..|--+-+.| +|..++....      |..+.||.|.+
T Consensus        17 ~~~~~~tl~C~v~gf~P~~i~v-~W~~~g~~~~~~~~~~~~~~~dgtys~   65 (102)
T d1igtb4          17 MTKKQVTLTCMVTDFMPEDIYV-EWTNNGKTELNYKNTEPVLDSDGSYFM   65 (102)
T ss_dssp             TTSSEEEEEEEEEEEBSSCCEE-EEEETTEECSSEEECCCEECTTSCEEE
T ss_pred             hcCCcEEEEEEEEEeECCCcEE-EEEECCEEccCcEEccceeCCCCcEEE
Confidence            4689999999997665455554 5999873321      22345777765

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=86.88  E-value=0.63  Score=28.42  Aligned_cols=58  Identities=16%  Similarity=0.255  Sum_probs=37.3

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccC--C---ee-eecC----cCCCceEEEccCcc---EEEEeEeeecC
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQD--D---VN-IYLN----TDTGGKYVVLSSGD---LYVQIRLSITG   79 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~D--d---~~-I~p~----~~~dgKY~vlpsGe---L~Ir~v~~~~~   79 (98)
                      |-.|.+|.|.|...+....+   ..|.+-  .   .. |+-.    ....+|+.+.-+|.   |.|++++.+|.
T Consensus        12 ~~~G~svtl~C~~s~~~~~~---~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~Ds   82 (106)
T d1a0ql1          12 ASLGGKVTITCKASQDIKKY---IGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDI   82 (106)
T ss_dssp             ECTTCCEEEEEEESSCCTTC---EEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEcCCCCCCC---eEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCC
Confidence            44799999999877666665   456552  2   22 2311    11345787765554   99999888874

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.83  E-value=0.28  Score=29.69  Aligned_cols=64  Identities=16%  Similarity=0.239  Sum_probs=40.2

Q ss_pred             eecCeEEEEccCCCCcccee-EEeEEccCCeeeec------CcCCCceEEEc------c----CccEEEEeEeeecCCcc
Q psy5692          20 ILGNTAVLRCQIPSYMSEYI-IVTSWIQDDVNIYL------NTDTGGKYVVL------S----SGDLYVQIRLSITGNLS   82 (98)
Q Consensus        20 irGNtAVLkC~IPs~V~d~V-~V~SW~~Dd~~I~p------~~~~dgKY~vl------p----sGeL~Ir~v~~~~~n~~   82 (98)
                      ..+.+|.|.|.+..|--+-. .-++|..++..+..      ..+.+|.|.+.      +    +|+-|...|.-+.-+..
T Consensus        16 ~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~~p   95 (105)
T d1l6xa1          16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAP   95 (105)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSC
T ss_pred             ccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEECCcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCCCCCC
Confidence            35789999999976654543 34699998854421      12467887662      1    36677777665554443


Q ss_pred             e
Q psy5692          83 V   83 (98)
Q Consensus        83 ~   83 (98)
                      +
T Consensus        96 i   96 (105)
T d1l6xa1          96 I   96 (105)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.74  E-value=0.64  Score=28.30  Aligned_cols=62  Identities=15%  Similarity=0.205  Sum_probs=38.1

Q ss_pred             eecCeEEEEccCCCCccceeEEeEEccCCeeee-------c-CcCCCceEEEcc----------CccEEEEeEeeecCCc
Q psy5692          20 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIY-------L-NTDTGGKYVVLS----------SGDLYVQIRLSITGNL   81 (98)
Q Consensus        20 irGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~-------p-~~~~dgKY~vlp----------sGeL~Ir~v~~~~~n~   81 (98)
                      +.++.+.|.|.+..|--+-+. .+|..++..+.       + ..+.+|.|.+..          .|.-|-..|.-+..+.
T Consensus        18 ~~~~~~tL~Cl~~~f~P~~i~-v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~~~~   96 (107)
T d1mjul2          18 LTSGGASVVCFLNNFYPKDIN-VKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS   96 (107)
T ss_dssp             HTTTEEEEEEEEEEEBSSCCE-EEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             hcCCceEEEEEEEEeECCCCE-EEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCCCC
Confidence            357889999999877656555 78998874442       1 123467776421          2666666665544443


Q ss_pred             c
Q psy5692          82 S   82 (98)
Q Consensus        82 ~   82 (98)
                      .
T Consensus        97 p   97 (107)
T d1mjul2          97 P   97 (107)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=86.66  E-value=0.14  Score=31.87  Aligned_cols=42  Identities=24%  Similarity=0.393  Sum_probs=30.7

Q ss_pred             ecCeEEEEccCCCCccceeEEeEEccCC----eeeecCcCCCceEEE
Q psy5692          21 LGNTAVLRCQIPSYMSEYIIVTSWIQDD----VNIYLNTDTGGKYVV   63 (98)
Q Consensus        21 rGNtAVLkC~IPs~V~d~V~V~SW~~Dd----~~I~p~~~~dgKY~v   63 (98)
                      .++.|.|.|.+..|--+-+.| +|..++    ....|..+.||.|.+
T Consensus        26 ~~~~~tL~C~v~gf~P~~i~v-~W~~~~~~~~~~~~~~~~~dgtys~   71 (111)
T d1pfca_          26 SKKKVSLTCMITGFYPADINV-EWDSSEPSDYKNTPPVFDTDGSFFL   71 (111)
T ss_dssp             CTTSCCEEEEEESCCSSCCEE-ESSSCCTTTEEEEEEECCSSCCCEE
T ss_pred             cCCceEEEEEEEeeECCCcEE-EEeeCCCCCcEEcccEECCCCcEEE
Confidence            578899999999887777665 798875    233344556788877

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=86.33  E-value=0.66  Score=28.33  Aligned_cols=57  Identities=18%  Similarity=0.320  Sum_probs=35.8

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCC-----ee-eecCc----CCCceEEEccCc---cEEEEeEeeec
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VN-IYLNT----DTGGKYVVLSSG---DLYVQIRLSIT   78 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~-I~p~~----~~dgKY~vlpsG---eL~Ir~v~~~~   78 (98)
                      +-.|.+|.|.|........+   ..|.+-.     .. |+...    ....||.+..++   -|.|++++.+|
T Consensus        12 ~~~G~svtL~C~~~~~~~~~---~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~D   81 (106)
T d1op3k1          12 ASVGDTITITCRASQSIETW---LAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDD   81 (106)
T ss_dssp             ECTTCEEEEEEEESSCCTTC---EEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGG
T ss_pred             ECCCCCEEEEEEeCCCCCCc---EEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccC
Confidence            34799999999987666555   3566552     22 33221    124577775433   48888888776

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=86.23  E-value=0.53  Score=28.91  Aligned_cols=58  Identities=16%  Similarity=0.108  Sum_probs=37.7

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCC-----eee-ecCc----CCCceEEEcc-----CccEEEEeEeeecC
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLNT----DTGGKYVVLS-----SGDLYVQIRLSITG   79 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~p~~----~~dgKY~vlp-----sGeL~Ir~v~~~~~   79 (98)
                      |..|.+++|.|.......+++   .|.+..     ..| +-..    ..+++|.+..     +-.|.|++++.+|.
T Consensus        13 v~~G~~vtL~C~~~~~~~~~i---~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   85 (115)
T d1lp9e1          13 LTEGLPVMLNCTYQSTYSPFL---FWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDS   85 (115)
T ss_dssp             EETTSCEEECEEEECSSSCCE---EEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGC
T ss_pred             ECCCCCEEEEEEEeCCCcCCe---eEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccC
Confidence            448999999999877776653   687642     333 2211    2356777752     22489998887774

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=85.96  E-value=0.37  Score=29.64  Aligned_cols=57  Identities=16%  Similarity=0.313  Sum_probs=36.2

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccC--C---eee-ecC----cCCCceEEEccCc---cEEEEeEeeec
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQD--D---VNI-YLN----TDTGGKYVVLSSG---DLYVQIRLSIT   78 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~D--d---~~I-~p~----~~~dgKY~vlpsG---eL~Ir~v~~~~   78 (98)
                      |-.|.+|.|.|...+....+   ..|.+-  .   ..+ +..    .....||...-+|   .|.|++++.+|
T Consensus        13 v~~G~svtl~C~~s~~~~~~---~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~D   82 (106)
T d1i8ka_          13 VATGEKVTIRCMTSTDIDDD---MNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSED   82 (106)
T ss_dssp             CCTTCCEEEEEEESSCCTTC---EEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             ECCCCCEEEEEEeCCCCCcc---EEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCcccc
Confidence            45899999999977666655   478753  1   222 211    1134577765444   38899888776

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.93  E-value=0.73  Score=27.95  Aligned_cols=30  Identities=17%  Similarity=0.366  Sum_probs=22.8

Q ss_pred             eecCeEEEEccCCCCccceeEEeEEccCCee
Q psy5692          20 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVN   50 (98)
Q Consensus        20 irGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~   50 (98)
                      +.++.|.|.|.+..|--+.+. .+|..|+..
T Consensus        18 ~~~~~~~L~Clv~~f~P~~i~-v~W~~ng~~   47 (107)
T d1c5cl2          18 LKSGTASVVCLLNNFYPREAK-VQWKVDNAL   47 (107)
T ss_dssp             HHTTEEEEEEEEEEEBSSCCE-EEEEETTEE
T ss_pred             hcCCceEEEEEEEEeeCCCCE-EEEEECCEE
Confidence            357899999999877666666 469988743

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.69  E-value=0.36  Score=29.18  Aligned_cols=44  Identities=20%  Similarity=0.448  Sum_probs=30.3

Q ss_pred             eecCeEEEEccCCCCccceeEEeEEccCCeeeec-------CcCCCceEEEc
Q psy5692          20 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYL-------NTDTGGKYVVL   64 (98)
Q Consensus        20 irGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p-------~~~~dgKY~vl   64 (98)
                      +.|+.+.|-|.+..|-.+-+. .+|..++..+..       ..+.||.|.+.
T Consensus        18 ~~~~~~tL~C~v~~f~P~~i~-v~W~~~g~~~~~~~~~~~~~~~~dgtys~~   68 (102)
T d1rzfl2          18 LQANKATLVCLISDFYPGAVT-VAWKADSSPVKAGVETTTPSKQSNNKYAAS   68 (102)
T ss_dssp             HHTTCEEEEEEEEEEBSSCCE-EEEEETTEECCSSEEECCCEECTTSCEEEE
T ss_pred             hcCCcEEEEEEEEeeCCCCeE-EEEEECCEECCCCEEeCCcEECCCCEEEEE
Confidence            358889999999988777765 679988754421       12346777653

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=85.65  E-value=0.69  Score=28.15  Aligned_cols=57  Identities=18%  Similarity=0.376  Sum_probs=35.6

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCC-----ee-eecCc----CCCceEEEccCc---cEEEEeEeeec
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VN-IYLNT----DTGGKYVVLSSG---DLYVQIRLSIT   78 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~-I~p~~----~~dgKY~vlpsG---eL~Ir~v~~~~   78 (98)
                      +-.|.+|.|.|...+....++   .|.+-.     .. |+-..    ....+|.+.-+|   -|.|++++.+|
T Consensus        15 ~~~G~svtL~C~~s~~~~~~~---~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~D   84 (109)
T d1bwwa_          15 ASVGDRVTITCQASQDIIKYL---NWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPED   84 (109)
T ss_dssp             ECTTCCEEEEEEESSCCTTCE---EEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             ECCCCCEEEEEEecCCCCCcc---eEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCc
Confidence            447999999999876655543   577632     22 22211    124577765443   58888888776

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=85.18  E-value=0.7  Score=27.98  Aligned_cols=57  Identities=19%  Similarity=0.359  Sum_probs=33.4

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEcc--CC----eeeecCcC----CCceEEEc--c---CccEEEEeEeeec
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQ--DD----VNIYLNTD----TGGKYVVL--S---SGDLYVQIRLSIT   78 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~--Dd----~~I~p~~~----~dgKY~vl--p---sGeL~Ir~v~~~~   78 (98)
                      +..|.+|.|.|....+..+++   .|.+  .+    ..|+....    ..+|+...  +   +-.|.|++++.+|
T Consensus        12 ~~~G~svtl~C~~s~~~~~~~---~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   83 (111)
T d1bd2d1          12 VQEGRISILNCDYTNSMFDYF---LWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGD   83 (111)
T ss_dssp             EETTSCEEEEEEECCTTCCEE---EEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGG
T ss_pred             EcCCCCEEEEEEeCCCCCCeE---EEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccc
Confidence            447999999999887777764   4554  22    22322211    13455442  2   3467777777665

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=85.09  E-value=1.3  Score=26.74  Aligned_cols=66  Identities=14%  Similarity=0.087  Sum_probs=36.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----e-eeecCc----CCCceEEEcc---CccEEEEeEeeecCCccee
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----V-NIYLNT----DTGGKYVVLS---SGDLYVQIRLSITGNLSVK   84 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~-~I~p~~----~~dgKY~vlp---sGeL~Ir~v~~~~~n~~~~   84 (98)
                      .|..|.+|.|.|.........-  ..|.+-.     . .++...    ....++.+..   +..|.|++++.+|  +++=
T Consensus         9 sv~~G~~vtl~C~~s~~~~~~~--l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D--sa~Y   84 (110)
T d2esvd1           9 DCAEGRAANLPCNHSTISGNEY--VYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRD--TAVY   84 (110)
T ss_dssp             EEETTSCEEEEEECTTCCTTEE--EEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGG--CEEE
T ss_pred             EECCCCCEEEEEEEcCCCCCCe--EEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCC--ceEE
Confidence            3458999999998654433221  3587632     2 233321    1234555543   3458888888765  3444


Q ss_pred             eee
Q psy5692          85 KMK   87 (98)
Q Consensus        85 ~~~   87 (98)
                      -|-
T Consensus        85 yCa   87 (110)
T d2esvd1          85 YCI   87 (110)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.85  E-value=0.13  Score=31.36  Aligned_cols=59  Identities=20%  Similarity=0.347  Sum_probs=36.1

Q ss_pred             eeecCeEEEEccCCCCc-cceeEEeEEccCC--eee--ecCcCCCceEEEcc----------CccEEEEeEeeec
Q psy5692          19 VILGNTAVLRCQIPSYM-SEYIIVTSWIQDD--VNI--YLNTDTGGKYVVLS----------SGDLYVQIRLSIT   78 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V-~d~V~V~SW~~Dd--~~I--~p~~~~dgKY~vlp----------sGeL~Ir~v~~~~   78 (98)
                      +..|++|.|.|.+..|- .+-+ -.+|..++  ...  .|....+|.|.+..          +|.-|...|.-.+
T Consensus        15 ~~~~~~~tL~C~v~~f~~p~~i-~v~W~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~W~~g~~ftC~V~H~~   88 (101)
T d1ow0a1          15 LLLGSEANLTCTLTGLRDASGV-TFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPE   88 (101)
T ss_dssp             HHHCSSCCCEEEETTCCSCCCC-CCCBSSCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEEEEECCSS
T ss_pred             HccCCCeEEEEEEeCCCCCcce-EEEEEECCceeeeecceEECCCCCEEEEEEEEEcHHHcCCCCeEEEEEEeCC
Confidence            45789999999998764 3333 46898876  221  33445567765521          2666666665443

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.54  E-value=0.44  Score=29.75  Aligned_cols=58  Identities=16%  Similarity=0.310  Sum_probs=35.0

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEcc---CC------eeeecCc-----------CCCceEEEc-cCc---cEEEEeE
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQ---DD------VNIYLNT-----------DTGGKYVVL-SSG---DLYVQIR   74 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~---Dd------~~I~p~~-----------~~dgKY~vl-psG---eL~Ir~v   74 (98)
                      +-.|-++.|.|.+.+.....   ..|++   +.      ..+|-+.           +...++... ++|   -|.|+++
T Consensus        13 ~~~G~~vtL~C~~~~~~~~~---v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~L~I~~~   89 (122)
T d1nezg_          13 AELGQKVDLVCEVLGSVSQG---CSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLNKF   89 (122)
T ss_dssp             ECTTCCEEEEEEEESCCSSC---EEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTEEEEEESSC
T ss_pred             ECCCCCEEEEEEEcCccCCC---EEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCEeEEEEccc
Confidence            45799999999987666554   36765   11      1222211           112356553 454   3899998


Q ss_pred             eeecC
Q psy5692          75 LSITG   79 (98)
Q Consensus        75 ~~~~~   79 (98)
                      +.+|.
T Consensus        90 ~~~Ds   94 (122)
T d1nezg_          90 SKENE   94 (122)
T ss_dssp             CGGGC
T ss_pred             ccCCC
Confidence            88774

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=84.29  E-value=0.72  Score=27.87  Aligned_cols=66  Identities=20%  Similarity=0.242  Sum_probs=37.8

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCC-----e-eeecCc-C----CCceEEEc--c-C--ccEEEEeEeeecCCc
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----V-NIYLNT-D----TGGKYVVL--S-S--GDLYVQIRLSITGNL   81 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~-~I~p~~-~----~dgKY~vl--p-s--GeL~Ir~v~~~~~n~   81 (98)
                      .|..|.++.|.|.......++.  ..|.+-.     . .|+... .    ..++|.+.  + .  ..|.|.+++.+|.  
T Consensus        10 ~~~~G~~Vtl~C~~~~~~~~~~--i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds--   85 (115)
T d1fo0a_          10 SVMEKTTVTMDCVYETQDSSYF--LFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDS--   85 (115)
T ss_dssp             EEETTCCEEECCEECCCCSSCE--EEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGC--
T ss_pred             EEcCCCCEEEEEEEcCCCCCCC--CEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCcccc--
Confidence            3568999999998765444443  4687621     2 232211 1    13556553  2 2  3499999988764  


Q ss_pred             ceeeee
Q psy5692          82 SVKKMK   87 (98)
Q Consensus        82 ~~~~~~   87 (98)
                      ++==|-
T Consensus        86 a~YyCa   91 (115)
T d1fo0a_          86 AVYFCA   91 (115)
T ss_dssp             EEEEEE
T ss_pred             ccccce
Confidence            444443

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=84.13  E-value=0.63  Score=28.66  Aligned_cols=66  Identities=12%  Similarity=0.257  Sum_probs=39.2

Q ss_pred             eeeeceEEEEeeeeceeecCeEEEEccCCCCccceeEEeEEccCC-----eee-ecCc----CCCceEEEcc---CccEE
Q psy5692           4 VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLNT----DTGGKYVVLS---SGDLY   70 (98)
Q Consensus         4 VV~Q~Yev~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~p~~----~~dgKY~vlp---sGeL~   70 (98)
                      ||.||=.  +.-    -.|.+|.|.|...+....++   .|.+-.     ..| |-..    ...+||.+.-   +.-|+
T Consensus         2 ~ltQP~s--~~~----~~G~svtl~C~~~~~~~~~i---~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~   72 (108)
T d1nfde1           2 ELIQPSS--ASV----TVGETVKITCSGDQLPKNFA---YWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLT   72 (108)
T ss_dssp             CEECCSE--EEE----ETTSCCCEEEEETTGGGSCC---EEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEE
T ss_pred             ceECCCe--eEE----CCCCCEEEEEECCCCCCccE---EEEecccccceeeeccccccccccccceeeecCCCCEeeee
Confidence            6778732  222    37999999998766655554   677632     223 2211    1244676642   34688


Q ss_pred             EEeEeeec
Q psy5692          71 VQIRLSIT   78 (98)
Q Consensus        71 Ir~v~~~~   78 (98)
                      |.+++.+|
T Consensus        73 I~~l~~~D   80 (108)
T d1nfde1          73 ISGAQPED   80 (108)
T ss_dssp             ETTCCGGG
T ss_pred             EcCccccC
Confidence            88877665

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=84.05  E-value=1.2  Score=27.69  Aligned_cols=30  Identities=17%  Similarity=0.384  Sum_probs=24.1

Q ss_pred             ecCeEEEEccCCCCccceeEEeEEccCCeee
Q psy5692          21 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI   51 (98)
Q Consensus        21 rGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I   51 (98)
                      .++.+.|.|.+..|--+-+. .+|..++..+
T Consensus        19 ~~~~~tL~C~v~gf~P~~i~-v~W~~~g~~~   48 (127)
T d1ogae2          19 HTQKATLVCLATGFYPDHVE-LSWWVNGKEV   48 (127)
T ss_dssp             HHSEEEEEEEEEEEBSSCEE-EEEEETTEEE
T ss_pred             cCCcEEEEEEEEeccCCCeE-EEEEECCEEc
Confidence            47889999999988777665 6899887554

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.96  E-value=1.5  Score=26.65  Aligned_cols=45  Identities=18%  Similarity=0.330  Sum_probs=30.7

Q ss_pred             eeceEEEEeeeeceeecCeEEEEccCCCCccceeEEeEEccCCeee
Q psy5692           6 KQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI   51 (98)
Q Consensus         6 ~Q~Yev~V~d~~~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I   51 (98)
                      +.+=+|+|...+-+..|.+++|.|.+..|=-+-+. .+|.+++..+
T Consensus         3 ~~~P~V~v~~~~~~~~~~~~tL~C~~~gFyP~~i~-v~W~~ng~~v   47 (100)
T d1k5nb_           3 QRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIE-VDLLKNGERI   47 (100)
T ss_dssp             CBCCEEEEEESSCCCTTSCEEEEEEEEEEBSSCCE-EEEEETTEEC
T ss_pred             cCCCeeEEEcCCcccCCCCEEEEEEECccCCCCcE-EEEEECCEec
Confidence            33335556432246689999999999866656555 4799988655

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=83.86  E-value=1.2  Score=27.27  Aligned_cols=57  Identities=14%  Similarity=0.169  Sum_probs=37.5

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCC-----eee-ec----CcCCCceEEEcc---CccEEEEeEeeec
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YL----NTDTGGKYVVLS---SGDLYVQIRLSIT   78 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~p----~~~~dgKY~vlp---sGeL~Ir~v~~~~   78 (98)
                      |..|.+|.|.|..+++..++   ..|.+-.     ..| +-    .....+||.+..   +-.|.|.+++.+|
T Consensus        13 v~~G~svtl~C~~s~~~~~~---~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~D   82 (107)
T d1ospl1          13 VSLGDRVTITCKASEDIYSR---LAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTED   82 (107)
T ss_dssp             ECTTCCEEEEEEESSCCTTC---EEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGG
T ss_pred             ECCCCCEEEEEecCCCcccc---cEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEccccccc
Confidence            45799999999988877766   4687742     222 21    112356787764   3568888887766

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=83.60  E-value=0.56  Score=28.79  Aligned_cols=57  Identities=14%  Similarity=0.236  Sum_probs=37.5

Q ss_pred             eecCeEEEEccCCCCccceeEEeEEccCC-----eeeecC-----cCCCceEEEcc---CccEEEEeEeeecC
Q psy5692          20 ILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYLN-----TDTGGKYVVLS---SGDLYVQIRLSITG   79 (98)
Q Consensus        20 irGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I~p~-----~~~dgKY~vlp---sGeL~Ir~v~~~~~   79 (98)
                      -.|.+|.|.|..++....+   ..|.+-.     ..|+..     .....||.+..   +..|.|++++.+|.
T Consensus        14 ~~G~svtl~C~~s~~~~~~---~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d1mexl1          14 SLGNRVSVTCKASQNVGTN---VAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDL   83 (107)
T ss_dssp             CTTSCEEEEEEESSCCTTC---EEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCCCCEEEEEEeCCCCCCc---eEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecc
Confidence            3799999999977666655   4798742     333221     12346777643   35599999988873

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=83.33  E-value=1.3  Score=26.09  Aligned_cols=55  Identities=18%  Similarity=0.320  Sum_probs=34.5

Q ss_pred             cCeEEEEccCCCCccceeEEeEEccC-C----eeee---cC-cCCCceEEEc--cCc---cEEEEeEeeecC
Q psy5692          22 GNTAVLRCQIPSYMSEYIIVTSWIQD-D----VNIY---LN-TDTGGKYVVL--SSG---DLYVQIRLSITG   79 (98)
Q Consensus        22 GNtAVLkC~IPs~V~d~V~V~SW~~D-d----~~I~---p~-~~~dgKY~vl--psG---eL~Ir~v~~~~~   79 (98)
                      |-+|.|.|..++...+++   .|.+- +    ..|+   .. ....|||...  +++   .|.|++++.+|.
T Consensus         1 G~~vtl~C~~~~~~~~~~---~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Ds   69 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSF---FWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDS   69 (94)
T ss_dssp             TSCEEEEEEECCTTCCEE---EEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CccEEEEEEEccccCCcE---EEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcC
Confidence            778999999988777664   58762 2    2222   11 1235677663  333   488888887763

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=82.39  E-value=1.4  Score=27.35  Aligned_cols=68  Identities=15%  Similarity=0.146  Sum_probs=38.8

Q ss_pred             ceeeeceEEEEeeeeceeecCeEEEEccCCCCc-cceeEEeEEccCC-----eeeec-C----cCCCceEEEcc---Ccc
Q psy5692           3 PVVKQKYEINVNYEHNVILGNTAVLRCQIPSYM-SEYIIVTSWIQDD-----VNIYL-N----TDTGGKYVVLS---SGD   68 (98)
Q Consensus         3 AVV~Q~Yev~V~d~~~VirGNtAVLkC~IPs~V-~d~V~V~SW~~Dd-----~~I~p-~----~~~dgKY~vlp---sGe   68 (98)
                      -|+.|+=.  +    .|-.|.+|.|.|....+. .++-  ..|.+-.     ..|+- .    ....+|+.+..   +..
T Consensus         2 ~vltQ~ps--~----~v~~G~svtL~C~~s~~~~~~~~--~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   73 (114)
T d2rhea_           2 SVLTQPPS--A----SGTPGQRVTISCTGSATDIGSNS--VIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSAS   73 (114)
T ss_dssp             CSSBCCSE--E----EECTTCCEEEEEECCTTTTTTSC--EEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEE
T ss_pred             CccccCCc--E----EeCCCCCEEEEEEECCccccCCc--ccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeee
Confidence            36777622  2    233799999999865443 3332  2366542     22321 1    12345777753   467


Q ss_pred             EEEEeEeeec
Q psy5692          69 LYVQIRLSIT   78 (98)
Q Consensus        69 L~Ir~v~~~~   78 (98)
                      |.|.+++.+|
T Consensus        74 L~I~~v~~~D   83 (114)
T d2rhea_          74 LAISGLESED   83 (114)
T ss_dssp             EEESSCCGGG
T ss_pred             eEecccCccc
Confidence            8888887766

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=81.87  E-value=0.9  Score=27.83  Aligned_cols=60  Identities=22%  Similarity=0.237  Sum_probs=35.0

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEcc---CC--e-eeecCc-------CCCceEEEcc---C--ccEEEEeEeeecC
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQ---DD--V-NIYLNT-------DTGGKYVVLS---S--GDLYVQIRLSITG   79 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~---Dd--~-~I~p~~-------~~dgKY~vlp---s--GeL~Ir~v~~~~~   79 (98)
                      .|..|.+|.|.|...+....+  ...|.+   +.  . .++-..       ...+||.+..   +  -.|.|++++.+|.
T Consensus        11 ~~~~G~~vtL~C~~~~~~~~~--~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Ds   88 (116)
T d1tvda_          11 TVASGSEVVLLCTYDTVYSNP--DLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTEDS   88 (116)
T ss_dssp             EEETTCCEEECCEEECCSSSC--CEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCGGGC
T ss_pred             EEcCCCCEEEEEEEcCCccCC--cEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCcccccc
Confidence            356899999999875443333  246875   22  2 232211       1246887642   2  2478888887763

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.88  E-value=0.85  Score=27.57  Aligned_cols=66  Identities=18%  Similarity=0.200  Sum_probs=40.6

Q ss_pred             eecCeEEEEccCCCCccceeEEeEEccCC----eeeecCcCCCceEEEccCccEEEEeEeeecCCcceeeeeehHH
Q psy5692          20 ILGNTAVLRCQIPSYMSEYIIVTSWIQDD----VNIYLNTDTGGKYVVLSSGDLYVQIRLSITGNLSVKKMKVEEE   91 (98)
Q Consensus        20 irGNtAVLkC~IPs~V~d~V~V~SW~~Dd----~~I~p~~~~dgKY~vlpsGeL~Ir~v~~~~~n~~~~~~~~~~~   91 (98)
                      ..++++.|.|.+..|--+- .-.+|..++    ..-+|....+|.|.+..  -|   .+...+-+...-.|.|+-+
T Consensus        18 ~~~~~~tl~Cl~~gf~P~~-i~v~W~~~~~~~~~~~~~~~~~~g~~s~~S--~L---~v~~~~w~~~~ytC~V~H~   87 (101)
T d1kcvh2          18 AAASAVTLGCLVKGYFPEP-VTVAWNEGALSSGVLTVSAVLQSGLYTLSS--NT---TVASGTWPSASVTCLVAHP   87 (101)
T ss_dssp             TTCSEEEEEEEEEEEBSSC-CEEEEGGGTCCTTEEECCCEEETTEEEEEE--EE---EEETTTTTTSCCEEEEEEG
T ss_pred             cCCCeEEEEEEEEEEeCCC-CEEEEecCCCcccceeeeeecCCCCEEEEE--EE---EEchhhcCCCeEEEEEEeC
Confidence            3688999999998764444 456898887    22344444577776631  22   2344444444577887644

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.78  E-value=0.78  Score=27.63  Aligned_cols=61  Identities=11%  Similarity=0.178  Sum_probs=36.2

Q ss_pred             eecCeEEEEccCCCCccc-eeEEeEEccCCeeee------cCcCCCceEEEcc----------CccEEEEeEeeecCC
Q psy5692          20 ILGNTAVLRCQIPSYMSE-YIIVTSWIQDDVNIY------LNTDTGGKYVVLS----------SGDLYVQIRLSITGN   80 (98)
Q Consensus        20 irGNtAVLkC~IPs~V~d-~V~V~SW~~Dd~~I~------p~~~~dgKY~vlp----------sGeL~Ir~v~~~~~n   80 (98)
                      ..+++|.|.|.+..|-.+ ...-+.|..++....      +..+.+|.|.+..          +|.-|...|.-.+-+
T Consensus        14 ~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC~V~H~~l~   91 (103)
T d1fp5a1          14 FIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLP   91 (103)
T ss_dssp             HTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEEEEEECCHHHHHTTCCEEEEEECSSCS
T ss_pred             hhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCC
Confidence            358899999999765444 344578988873221      2224567776531          255555555544433

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=80.76  E-value=0.98  Score=27.89  Aligned_cols=58  Identities=19%  Similarity=0.307  Sum_probs=36.4

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCC-----eeeecCc-----CCCceEEEcc---CccEEEEeEeeecC
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYLNT-----DTGGKYVVLS---SGDLYVQIRLSITG   79 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I~p~~-----~~dgKY~vlp---sGeL~Ir~v~~~~~   79 (98)
                      |-.|-+|.|.|...++...++   .|.+-.     ..|+...     ....++....   +..|-|++++.+|.
T Consensus        13 ~~~G~svtl~C~~s~~~~~~~---~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   83 (107)
T d1c5cl1          13 ASLGERVSLTCRTSQEISGYL---SWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDF   83 (107)
T ss_dssp             ECTTCCEEEEEEESSCCTTCE---EEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             ECCCCCEEEEEEeCCCCCCCE---EEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCC
Confidence            447999999999877666554   587632     2222211     1244666554   34788888887763

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.19  E-value=0.5  Score=28.50  Aligned_cols=43  Identities=19%  Similarity=0.400  Sum_probs=28.3

Q ss_pred             eecCeEEEEccCCCCccceeEEeEEccCCeeee------cCcCCCceEEE
Q psy5692          20 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIY------LNTDTGGKYVV   63 (98)
Q Consensus        20 irGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~------p~~~~dgKY~v   63 (98)
                      +.+++|.|.|.+..|--.-+ -.+|..|+..+-      |..+.||.|.+
T Consensus        17 ~~~~~~~L~C~v~~f~P~~i-~v~W~~~g~~~~~~~~~~~~~~~dgt~s~   65 (102)
T d1i1ca2          17 MTQSQVSITCMVKGFYPPDI-YTEWKMNGQPQENYKNTPPTMDTDGSYFL   65 (102)
T ss_dssp             GGSSEEEEEEEEEEEBSSCC-EEEEEETTEECSSEEECCCEECTTSCEEE
T ss_pred             hcCCeEEEEEEEEEEECCCC-EEEEEECCeeccCcEEcccEeCCCCCEEE
Confidence            35688999999976654554 478999974331      22344677665

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=80.09  E-value=1.4  Score=26.96  Aligned_cols=46  Identities=17%  Similarity=0.388  Sum_probs=30.9

Q ss_pred             ceeecCeEEEEccCCCCccceeEEeEEccCCeeeec----C---cCCCceEEEc
Q psy5692          18 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYL----N---TDTGGKYVVL   64 (98)
Q Consensus        18 ~VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd~~I~p----~---~~~dgKY~vl   64 (98)
                      -+..|.+++|.|.+..|=-+-+. .+|.+++..+..    +   .+.||.|.+.
T Consensus        13 ~~~~~~~~tL~C~v~gFyP~~i~-v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~   65 (100)
T d1muja1          13 PVLLGQPNTLICFVDNIFPPVIN-ITWLRNSKSVADGVYETSFFVNRDYSFHKL   65 (100)
T ss_dssp             CCCTTSCEEEEEEEEEECSSCCE-EEEEESSSBCCSSEEECCCEECTTSCEEEE
T ss_pred             ccccCCCEEEEEEEEeEECCCCE-EEEEeCCeeccCCceeeeeEECCCCCEEEE
Confidence            35578899999999877555555 689998744422    1   1456777654

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=80.07  E-value=1.3  Score=26.97  Aligned_cols=57  Identities=19%  Similarity=0.366  Sum_probs=35.9

Q ss_pred             eeecCeEEEEccCCCCccceeEEeEEccCC-----eee-ec-C---cCCCceEEEccC---ccEEEEeEeeec
Q psy5692          19 VILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YL-N---TDTGGKYVVLSS---GDLYVQIRLSIT   78 (98)
Q Consensus        19 VirGNtAVLkC~IPs~V~d~V~V~SW~~Dd-----~~I-~p-~---~~~dgKY~vlps---GeL~Ir~v~~~~   78 (98)
                      |-.|.++.|.|..++....++   .|.+-.     ..| +. +   ....+||....+   --|.|.+++.+|
T Consensus        13 ~~~G~svtl~C~~s~~~~~~~---~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~D   82 (107)
T d1d5il1          13 ASLGERVTITCKASQDINSYL---SWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYED   82 (107)
T ss_dssp             ECTTCCEEEEEEESSCCTTCE---EEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             ECCCCCEEEEEEcCCCCCCcc---ceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcC
Confidence            346999999999887776654   576542     223 22 1   112457766543   458888888766