Psyllid ID: psy5694

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MKMKDTFLLFFPMLPVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGKLKSLCTSY
Secondary Structure (PSIPRED)
cccEEEEEEEEccccEEEcccEEEccEEEEEEccccEEEEEEccccccccEEEEEEEEcccccccccccccEEEEcccccEEEEccccccccccEEEEEEEcccccEEEcccccEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccccEEEEEEEEEEEEccEEEEEccEEEEEEEccHHHHHHEEEEEEEccccEEEcccccccEEEEEcccEEEEEEcccHcccccEEEEEEEccccEEEEEccccEEEEEcccccccccc
Coil and Loop (DISEMBL)
mkmkdtfllffpmlpvvkqkyEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYlntdtggkyvvlssgdlyvfnatpndgyksyrcrtvnkitgesqASVFQTRLSITGKLKSLCTSY
Flexible Loop (DISEMBL)
mkmkdtfllffpmlpVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVfnatpndgyksYRCRTVNKitgesqasvfqtrlsitgklkslctsy
Low Complexity Region (SEG)
MKMKDTFLLFFPMLPVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGKLKSLCTSY
Disordered region (IsUnstruct)
*****TFLLFFPMLPVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG*********
Disordered Region (DISOPRED)
****DTFLLFFPMLPVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITG************************
Disordered Region (DISEMBL)
MKMKDTFLLFFPMLPVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGKLKSLCTSY
Disordered Region (DISPRO)
MKMKDTFLLFFPMLPVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGKL*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKMKDTFLLFFPMLPVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGKLKSLCTSY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	129	2.2.26 [Sep-21-2011]
Q4VA61	2053	Down syndrome cell adhesi	yes	N/A	0.821	0.051	0.339	6e-11
O60469	2012	Down syndrome cell adhesi	yes	N/A	0.697	0.044	0.347	1e-10
Q9VS29	2074	Down syndrome cell adhesi	no	N/A	0.782	0.048	0.336	2e-10
Q8VHZ8	2013	Down syndrome cell adhesi	no	N/A	0.697	0.044	0.336	2e-10
Q9ERC8	2013	Down syndrome cell adhesi	no	N/A	0.697	0.044	0.336	2e-10
Q8TD84	2053	Down syndrome cell adhesi	no	N/A	0.821	0.051	0.330	5e-10
Q9BWV1	1114	Brother of CDO OS=Homo sa	no	N/A	0.697	0.080	0.269	0.0001

>sp|Q4VA61|DSCL1_MOUSE Down syndrome cell adhesion molecule-like protein 1 homolog OS=Mus musculus GN=Dscaml1 PE=1 SV=2

 Score = 66.2 bits (160), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 6/112 (5%)

Query: 16  VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV 75
           V ++ Y + V  +   + GN AV +C IPS + EY+ V SW +D V+I        ++ +
Sbjct: 122 VFREPYTVRVE-DQRSMRGNVAVFKCLIPSSVQEYVSVVSWEKDTVSI----TPENRFFI 176

Query: 76  LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGKLKSLCT 127
            S G LY+ +    D   +YRC T +K +GE++ S    RLS+T   +S+ T
Sbjct: 177 TSHGGLYISDVQKEDALSTYRCITQHKYSGETRQSN-GARLSVTDPAESIPT 227

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Promotes both isoneuronal self-avoidance for creating an orderly neurite arborization in retinal rod bipolar cells and heteroneuronal self-avoidance to maintain mosaic spacing between AII amacrine cells.
Mus musculus (taxid: 10090)

>sp|O60469|DSCAM_HUMAN Down syndrome cell adhesion molecule OS=Homo sapiens GN=DSCAM PE=1 SV=2

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 57/95 (60%), Gaps = 5/95 (5%)

Query: 16  VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV 75
           V+++ Y + V  +   + GN AV +C IPS +  YI V SW +D V++     +G ++++
Sbjct: 121 VLREPYTVRVE-DQKTMRGNVAVFKCIIPSSVEAYITVVSWEKDTVSLV----SGSRFLI 175

Query: 76  LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQAS 110
            S+G LY+ +    DG  +YRC T ++ TGE++ S
Sbjct: 176 TSTGALYIKDVQNEDGLYNYRCITRHRYTGETRQS 210

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38.

Homo sapiens (taxid: 9606)

>sp|Q9VS29|DSCL_DROME Down syndrome cell adhesion molecule-like protein Dscam2 OS=Drosophila melanogaster GN=Dscam2 PE=2 SV=3

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/104 (33%), Positives = 63/104 (60%), Gaps = 3/104 (2%)

Query: 16  VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYV 74
           VV Q Y+++V    +   G TA+LRC +P+++ E + V SW+ +  + IY +    GK+ 
Sbjct: 128 VVAQAYKVDVEV-LSAARGCTAILRCVVPTFVKELVRVVSWVHEPAIYIYPSLQGDGKFH 186

Query: 75  VLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI 118
           +L +G+L + N   +D  +S+RCR+++++T +   S   TRL I
Sbjct: 187 LLPTGELLIHNLQESDESQSFRCRSMHRLTRQVVVSS-PTRLRI 229

Cell adhesion molecule.

Drosophila melanogaster (taxid: 7227)

>sp|Q8VHZ8|DSCAM_RAT Down syndrome cell adhesion molecule homolog OS=Rattus norvegicus GN=Dscam PE=1 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 57/95 (60%), Gaps = 5/95 (5%)

Query: 16  VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV 75
           V+++ Y + V  +   + GN AV +C IPS +  Y+ V SW +D V++     +G ++++
Sbjct: 121 VLREPYTVRVE-DQKTMRGNVAVFKCIIPSSVEAYVTVVSWEKDTVSLV----SGSRFLI 175

Query: 76  LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQAS 110
            S+G LY+ +    DG  +YRC T ++ TGE++ S
Sbjct: 176 TSTGALYIKDVQNEDGLYNYRCITRHRYTGETRQS 210

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38 (By similarity). Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC.

Rattus norvegicus (taxid: 10116)

>sp|Q9ERC8|DSCAM_MOUSE Down syndrome cell adhesion molecule homolog OS=Mus musculus GN=Dscam PE=1 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 57/95 (60%), Gaps = 5/95 (5%)

Query: 16  VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV 75
           V+++ Y + V  +   + GN AV +C IPS +  Y+ V SW +D V++     +G ++++
Sbjct: 121 VLREPYTVRVE-DQKTMRGNVAVFKCIIPSSVEAYVTVVSWEKDTVSLV----SGSRFLI 175

Query: 76  LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQAS 110
            S+G LY+ +    DG  +YRC T ++ TGE++ S
Sbjct: 176 TSTGALYIKDVQNEDGLYNYRCITRHRYTGETRQS 210

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38.

Mus musculus (taxid: 10090)

>sp|Q8TD84|DSCL1_HUMAN Down syndrome cell adhesion molecule-like protein 1 OS=Homo sapiens GN=DSCAML1 PE=1 SV=2

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 6/112 (5%)

Query: 16  VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV 75
           V ++ Y + V  +   + GN AV +C IPS + EY+ V SW +D V+I        ++ +
Sbjct: 122 VFREPYTVRVE-DQRSMRGNVAVFKCLIPSSVQEYVSVVSWEKDTVSIIPEH----RFFI 176

Query: 76  LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGKLKSLCT 127
              G LY+ +    D   +YRC T +K +GE++ S    RLS+T   +S+ T
Sbjct: 177 TYHGGLYISDVQKEDALSTYRCITKHKYSGETRQSN-GARLSVTDPAESIPT 227

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Promotes both isoneuronal self-avoidance for creating an orderly neurite arborization in retinal rod bipolar cells and heteroneuronal self-avoidance to maintain mosaic spacing between AII amacrine cells.

Homo sapiens (taxid: 9606)

>sp|Q9BWV1|BOC_HUMAN Brother of CDO OS=Homo sapiens GN=BOC PE=1 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 14/104 (13%)

Query: 19  QKYEINVNYEHNVILGNTAVLRCQIPSYMSE----YIIVTSWIQDDVNIYLNTDTGGKYV 74
           Q ++++V +   V  GNTAV+ C +P    +    Y +   W++          + G Y+
Sbjct: 128 QDFKLDVQHVIEVDEGNTAVIACHLPESHPKAQVRYSVKQEWLE---------ASRGNYL 178

Query: 75  VLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI 118
           ++ SG+L + NA+  D    Y+C   N +T E + S    RL +
Sbjct: 179 IMPSGNLQIVNASQED-EGMYKCAAYNPVTQEVKTSGSSDRLRV 221

Component of a cell-surface receptor complex that mediates cell-cell interactions between muscle precursor cells. Promotes differentiation of myogenic cells.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
270009929	621	hypothetical protein TcasGA2_TC009253 [T	0.798	0.165	0.628	5e-33
189238865	1918	PREDICTED: similar to AGAP007092-PA [Tri	0.798	0.053	0.628	6e-33
442630978	1935	down syndrome cell adhesion molecule 4,	0.798	0.053	0.590	4e-29
221330976	1918	down syndrome cell adhesion molecule 4,	0.798	0.053	0.590	4e-29
221330980	1874	down syndrome cell adhesion molecule 4,	0.798	0.054	0.590	4e-29
115646214	506	IP05371p [Drosophila melanogaster]	0.798	0.203	0.590	6e-29
157136612	1694	down syndrome cell adhesion molecule [Ae	0.798	0.060	0.561	3e-27
195491267	1815	GE20723 [Drosophila yakuba] gi|194179590	0.682	0.048	0.606	3e-26
194865958	1774	GG14294 [Drosophila erecta] gi|190653471	0.682	0.049	0.606	4e-26
195325943	1531	GM25036 [Drosophila sechellia] gi|194118	0.682	0.057	0.606	4e-26

>gi|270009929|gb|EFA06377.1| hypothetical protein TcasGA2_TC009253 [Tribolium castaneum]

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 66/105 (62%), Positives = 89/105 (84%), Gaps = 2/105 (1%)

Query: 16  VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYV 74
           VVKQKY++ V+ E+ VI GNTAVL+C+IP+Y++EY++VTSW+QD+ +NIY NTD GGKYV
Sbjct: 129 VVKQKYDVQVHDEY-VIAGNTAVLKCKIPNYVAEYVMVTSWVQDETINIYPNTDIGGKYV 187

Query: 75  VLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 119
           VLS+GDLY+ NA P DGYK+Y CRTVN++TGE Q S++  R+ +T
Sbjct: 188 VLSNGDLYISNAGPGDGYKNYGCRTVNRLTGEVQTSMYPGRIIVT 232

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189238865|ref|XP_972891.2| PREDICTED: similar to AGAP007092-PA [Tribolium castaneum]

 Score =  145 bits (366), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 66/105 (62%), Positives = 89/105 (84%), Gaps = 2/105 (1%)

Query: 16  VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYV 74
           VVKQKY++ V+ E+ VI GNTAVL+C+IP+Y++EY++VTSW+QD+ +NIY NTD GGKYV
Sbjct: 129 VVKQKYDVQVHDEY-VIAGNTAVLKCKIPNYVAEYVMVTSWVQDETINIYPNTDIGGKYV 187

Query: 75  VLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 119
           VLS+GDLY+ NA P DGYK+Y CRTVN++TGE Q S++  R+ +T
Sbjct: 188 VLSNGDLYISNAGPGDGYKNYGCRTVNRLTGEVQTSMYPGRIIVT 232

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442630978|ref|NP_001261571.1| down syndrome cell adhesion molecule 4, isoform I [Drosophila melanogaster] gi|442630980|ref|NP_001261572.1| down syndrome cell adhesion molecule 4, isoform J [Drosophila melanogaster] gi|440215478|gb|AGB94266.1| down syndrome cell adhesion molecule 4, isoform I [Drosophila melanogaster] gi|440215479|gb|AGB94267.1| down syndrome cell adhesion molecule 4, isoform J [Drosophila melanogaster]

 Score =  132 bits (333), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 84/105 (80%), Gaps = 2/105 (1%)

Query: 16  VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD-DVNIYLNTDTGGKYV 74
           VV QKY + V+ E+ V+ GNTAVL+CQ+PSYMSE+++VT+W+QD  +++Y NTD GGKY 
Sbjct: 124 VVNQKYAVQVHDEY-VMTGNTAVLKCQVPSYMSEFVLVTAWVQDTGMHLYPNTDIGGKYT 182

Query: 75  VLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 119
           VLS+G+LY+ NA PND YKSY CRTVN++TGE Q S +  R+ +T
Sbjct: 183 VLSNGELYINNAGPNDAYKSYTCRTVNRLTGEVQISTYPGRIIVT 227

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|221330976|ref|NP_001137908.1| down syndrome cell adhesion molecule 4, isoform D [Drosophila melanogaster] gi|221330978|ref|NP_001036596.2| down syndrome cell adhesion molecule 4, isoform E [Drosophila melanogaster] gi|220902513|gb|ACL83263.1| down syndrome cell adhesion molecule 4, isoform D [Drosophila melanogaster] gi|220902514|gb|ABI31245.2| down syndrome cell adhesion molecule 4, isoform E [Drosophila melanogaster]

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 84/105 (80%), Gaps = 2/105 (1%)

Query: 16  VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD-DVNIYLNTDTGGKYV 74
           VV QKY + V+ E+ V+ GNTAVL+CQ+PSYMSE+++VT+W+QD  +++Y NTD GGKY 
Sbjct: 124 VVNQKYAVQVHDEY-VMTGNTAVLKCQVPSYMSEFVLVTAWVQDTGMHLYPNTDIGGKYT 182

Query: 75  VLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 119
           VLS+G+LY+ NA PND YKSY CRTVN++TGE Q S +  R+ +T
Sbjct: 183 VLSNGELYINNAGPNDAYKSYTCRTVNRLTGEVQISTYPGRIIVT 227

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|221330980|ref|NP_001137909.1| down syndrome cell adhesion molecule 4, isoform H [Drosophila melanogaster] gi|220902515|gb|ACL83264.1| down syndrome cell adhesion molecule 4, isoform H [Drosophila melanogaster]

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 84/105 (80%), Gaps = 2/105 (1%)

Query: 16  VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD-DVNIYLNTDTGGKYV 74
           VV QKY + V+ E+ V+ GNTAVL+CQ+PSYMSE+++VT+W+QD  +++Y NTD GGKY 
Sbjct: 124 VVNQKYAVQVHDEY-VMTGNTAVLKCQVPSYMSEFVLVTAWVQDTGMHLYPNTDIGGKYT 182

Query: 75  VLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 119
           VLS+G+LY+ NA PND YKSY CRTVN++TGE Q S +  R+ +T
Sbjct: 183 VLSNGELYINNAGPNDAYKSYTCRTVNRLTGEVQISTYPGRIIVT 227

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|115646214|gb|ABJ16979.1| IP05371p [Drosophila melanogaster]

 Score =  132 bits (331), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 84/105 (80%), Gaps = 2/105 (1%)

Query: 16  VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD-DVNIYLNTDTGGKYV 74
           VV QKY + V+ E+ V+ GNTAVL+CQ+PSYMSE+++VT+W+QD  +++Y NTD GGKY 
Sbjct: 50  VVNQKYAVQVHDEY-VMTGNTAVLKCQVPSYMSEFVLVTAWVQDTGMHLYPNTDIGGKYT 108

Query: 75  VLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 119
           VLS+G+LY+ NA PND YKSY CRTVN++TGE Q S +  R+ +T
Sbjct: 109 VLSNGELYINNAGPNDAYKSYTCRTVNRLTGEVQISTYPGRIIVT 153

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157136612|ref|XP_001663789.1| down syndrome cell adhesion molecule [Aedes aegypti] gi|108880975|gb|EAT45200.1| AAEL003498-PA [Aedes aegypti]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 59/105 (56%), Positives = 83/105 (79%), Gaps = 2/105 (1%)

Query: 16  VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD-DVNIYLNTDTGGKYV 74
           VV QKY + V+ E+ V+ GNTAVL+CQ+PSY+ +Y++VT+W+QD  V++Y NTD GGKY+
Sbjct: 37  VVNQKYNVQVHDEY-VMTGNTAVLKCQVPSYIQDYVVVTAWVQDTGVHLYPNTDIGGKYI 95

Query: 75  VLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 119
           VLS+GDLY+ NA P+D YK+Y CRTVN++T E Q S +  R+ +T
Sbjct: 96  VLSNGDLYINNAGPSDAYKTYSCRTVNRLTEEIQLSTYPGRVIVT 140

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195491267|ref|XP_002093489.1| GE20723 [Drosophila yakuba] gi|194179590|gb|EDW93201.1| GE20723 [Drosophila yakuba]

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 54/89 (60%), Positives = 73/89 (82%), Gaps = 1/89 (1%)

Query: 32  ILGNTAVLRCQIPSYMSEYIIVTSWIQD-DVNIYLNTDTGGKYVVLSSGDLYVFNATPND 90
           + GNTAVL+CQ+PSYMSE+++VT+W+QD  +++Y NTD GGKY VLS+G+LY+ NA PND
Sbjct: 1   MTGNTAVLKCQVPSYMSEFVLVTAWVQDTGMHLYPNTDIGGKYTVLSNGELYINNAGPND 60

Query: 91  GYKSYRCRTVNKITGESQASVFQTRLSIT 119
            YKSY CRTVN++TGE Q S +  R+ +T
Sbjct: 61  AYKSYTCRTVNRLTGEVQISTYPGRIIVT 89

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194865958|ref|XP_001971688.1| GG14294 [Drosophila erecta] gi|190653471|gb|EDV50714.1| GG14294 [Drosophila erecta]

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 54/89 (60%), Positives = 73/89 (82%), Gaps = 1/89 (1%)

Query: 32  ILGNTAVLRCQIPSYMSEYIIVTSWIQD-DVNIYLNTDTGGKYVVLSSGDLYVFNATPND 90
           + GNTAVL+CQ+PSYMSE+++VT+W+QD  +++Y NTD GGKY VLS+G+LY+ NA PND
Sbjct: 1   MTGNTAVLKCQVPSYMSEFVLVTAWVQDTGMHLYPNTDIGGKYTVLSNGELYINNAGPND 60

Query: 91  GYKSYRCRTVNKITGESQASVFQTRLSIT 119
            YKSY CRTVN++TGE Q S +  R+ +T
Sbjct: 61  AYKSYTCRTVNRLTGEVQISTYPGRIIVT 89

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195325943|ref|XP_002029690.1| GM25036 [Drosophila sechellia] gi|194118633|gb|EDW40676.1| GM25036 [Drosophila sechellia]

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 54/89 (60%), Positives = 73/89 (82%), Gaps = 1/89 (1%)

Query: 32  ILGNTAVLRCQIPSYMSEYIIVTSWIQD-DVNIYLNTDTGGKYVVLSSGDLYVFNATPND 90
           + GNTAVL+CQ+PSYMSE+++VT+W+QD  +++Y NTD GGKY VLS+G+LY+ NA PND
Sbjct: 1   MTGNTAVLKCQVPSYMSEFVLVTAWVQDTGMHLYPNTDIGGKYTVLSNGELYINNAGPND 60

Query: 91  GYKSYRCRTVNKITGESQASVFQTRLSIT 119
            YKSY CRTVN++TGE Q S +  R+ +T
Sbjct: 61  AYKSYTCRTVNRLTGEVQISTYPGRIIVT 89

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
FB|FBgn0263219	1918	Dscam4 "Down syndrome cell adh	0.798	0.053	0.590	2.4e-29
FB|FBgn0033159	2037	Dscam "Down syndrome cell adhe	0.844	0.053	0.459	5.8e-20
FB|FBgn0261046	2046	Dscam3 "Down syndrome cell adh	0.728	0.045	0.371	1.5e-11
UNIPROTKB|F1NY98	1994	DSCAM "Uncharacterized protein	0.697	0.045	0.347	1.6e-10
MGI|MGI:2150309	2053	Dscaml1 "Down syndrome cell ad	0.821	0.051	0.339	1.7e-10
RGD|1304887	2111	Dscaml1 "Down syndrome cell ad	0.821	0.050	0.339	1.7e-10
UNIPROTKB|O60469	2012	DSCAM "Down syndrome cell adhe	0.697	0.044	0.347	2.1e-10
MGI|MGI:1196281	2013	Dscam "Down syndrome cell adhe	0.697	0.044	0.336	2.7e-10
RGD|619992	2013	Dscam "Down syndrome cell adhe	0.697	0.044	0.336	2.7e-10
UNIPROTKB|Q8TD84	2053	DSCAML1 "Down syndrome cell ad	0.821	0.051	0.330	1.2e-09

FB|FBgn0263219 Dscam4 "Down syndrome cell adhesion molecule 4" [Drosophila melanogaster (taxid:7227)]

 Score = 341 (125.1 bits), Expect = 2.4e-29, P = 2.4e-29
 Identities = 62/105 (59%), Positives = 84/105 (80%)

Query:    16 VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYV 74
             VV QKY + V+ E+ V+ GNTAVL+CQ+PSYMSE+++VT+W+QD  +++Y NTD GGKY 
Sbjct:   124 VVNQKYAVQVHDEY-VMTGNTAVLKCQVPSYMSEFVLVTAWVQDTGMHLYPNTDIGGKYT 182

Query:    75 VLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 119
             VLS+G+LY+ NA PND YKSY CRTVN++TGE Q S +  R+ +T
Sbjct:   183 VLSNGELYINNAGPNDAYKSYTCRTVNRLTGEVQISTYPGRIIVT 227

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0007155 "cell adhesion" evidence=ISS

GO:0042802 "identical protein binding" evidence=ISS

FB|FBgn0033159 Dscam "Down syndrome cell adhesion molecule" [Drosophila melanogaster (taxid:7227)]

 Score = 253 (94.1 bits), Expect = 5.8e-20, P = 5.8e-20
 Identities = 51/111 (45%), Positives = 76/111 (68%)

Query:    16 VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDT-GGKYV 74
             VV Q YE  +  E+ VI GN AVL+C IPS++++++ V SWI D+ N+   +D   GKY+
Sbjct:   136 VVNQFYEAEIMTEY-VIRGNAAVLKCSIPSFVADFVRVESWIDDEGNVLSFSDNYDGKYL 194

Query:    75 VLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGKLKSL 125
             VL SG+L++    P DGYKSY+CRT +++TGE++ S  + RL IT  + S+
Sbjct:   195 VLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPVGSV 245

GO:0005887 "integral to plasma membrane" evidence=ISM;ISS

GO:0007411 "axon guidance" evidence=IGI;IMP;TAS

GO:0008046 "axon guidance receptor activity" evidence=IMP;NAS

GO:0007422 "peripheral nervous system development" evidence=IMP

GO:0016319 "mushroom body development" evidence=IMP

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0006909 "phagocytosis" evidence=IMP

GO:0051635 "bacterial cell surface binding" evidence=IDA

GO:0048666 "neuron development" evidence=IMP

GO:0030424 "axon" evidence=IDA

GO:0070593 "dendrite self-avoidance" evidence=IMP;IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0042802 "identical protein binding" evidence=IPI

GO:0021551 "central nervous system morphogenesis" evidence=IMP

GO:0048846 "axon extension involved in axon guidance" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

FB|FBgn0261046 Dscam3 "Down syndrome cell adhesion molecule 3" [Drosophila melanogaster (taxid:7227)]

 Score = 174 (66.3 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 36/97 (37%), Positives = 59/97 (60%)

Query:    16 VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQ-DDVNIYLNTDTGGKYV 74
             VV++++ ++V     V LGN+A+++C IP Y+  Y+ V SW + +++ +   +D  G+YV
Sbjct:   135 VVRRQFHVHVE-NTEVYLGNSALIKCAIPEYVRPYVRVASWHRGEEILLPDLSDVAGRYV 193

Query:    75 VLS-SGDLYVFNATPNDGYKSYRCRTVNKITGESQAS 110
             VL+ SGDLYV +    DG   + C   N + GE Q S
Sbjct:   194 VLAASGDLYVRSVRSEDGLMKFSCLVTNTLNGERQRS 230

GO:0007155 "cell adhesion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0007156 "homophilic cell adhesion" evidence=IC

GO:0042802 "identical protein binding" evidence=IPI

GO:0005887 "integral to plasma membrane" evidence=ISM

UNIPROTKB|F1NY98 DSCAM "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 164 (62.8 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 33/95 (34%), Positives = 57/95 (60%)

Query:    16 VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV 75
             V+++ Y + V  +   + GN AV +C IPS +  YI V SW +D V++     +G ++++
Sbjct:   107 VLREPYTVRVE-DQKAMRGNVAVFKCIIPSSVEAYITVVSWEKDTVSLV----SGPRFLI 161

Query:    76 LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQAS 110
              S+G LY+ +    DG  +YRC T ++ TGE++ S
Sbjct:   162 TSTGALYILDVQNEDGLYNYRCITRHRYTGETRQS 196

GO:0005886 "plasma membrane" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0042327 "positive regulation of phosphorylation" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=IEA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IEA

GO:0070593 "dendrite self-avoidance" evidence=IEA

MGI|MGI:2150309 Dscaml1 "Down syndrome cell adhesion molecule like 1" [Mus musculus (taxid:10090)]

 Score = 164 (62.8 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 38/112 (33%), Positives = 62/112 (55%)

Query:    16 VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV 75
             V ++ Y + V  + ++  GN AV +C IPS + EY+ V SW +D V+I        ++ +
Sbjct:   122 VFREPYTVRVEDQRSM-RGNVAVFKCLIPSSVQEYVSVVSWEKDTVSI----TPENRFFI 176

Query:    76 LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGKLKSLCT 127
              S G LY+ +    D   +YRC T +K +GE++ S    RLS+T   +S+ T
Sbjct:   177 TSHGGLYISDVQKEDALSTYRCITQHKYSGETRQSN-GARLSVTDPAESIPT 227

GO:0005886 "plasma membrane" evidence=ISA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=ISO;ISA

GO:0007162 "negative regulation of cell adhesion" evidence=IMP

GO:0007399 "nervous system development" evidence=IEA

GO:0007420 "brain development" evidence=ISO

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016338 "calcium-independent cell-cell adhesion" evidence=ISA

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0048704 "embryonic skeletal system morphogenesis" evidence=ISO

GO:0070593 "dendrite self-avoidance" evidence=IMP

RGD|1304887 Dscaml1 "Down syndrome cell adhesion molecule-like 1" [Rattus norvegicus (taxid:10116)]

 Score = 164 (62.8 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 38/112 (33%), Positives = 62/112 (55%)

Query:    16 VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV 75
             V ++ Y + V  + ++  GN AV +C IPS + EY+ V SW +D V+I        ++ +
Sbjct:   180 VFREPYTVRVEDQRSM-RGNVAVFKCLIPSSVQEYVSVVSWEKDTVSI----TPENRFFI 234

Query:    76 LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGKLKSLCT 127
              S G LY+ +    D   +YRC T +K +GE++ S    RLS+T   +S+ T
Sbjct:   235 TSHGGLYISDVQKEDALSTYRCITQHKYSGETRQSN-GARLSVTDPAESIPT 285

GO:0007156 "homophilic cell adhesion" evidence=IEA;ISO

GO:0007162 "negative regulation of cell adhesion" evidence=IEA;ISO

GO:0007420 "brain development" evidence=IEA;ISO

GO:0009986 "cell surface" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0048704 "embryonic skeletal system morphogenesis" evidence=IEA;ISO

GO:0070593 "dendrite self-avoidance" evidence=IEA;ISO

UNIPROTKB|O60469 DSCAM "Down syndrome cell adhesion molecule" [Homo sapiens (taxid:9606)]

 Score = 163 (62.4 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 33/95 (34%), Positives = 57/95 (60%)

Query:    16 VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV 75
             V+++ Y + V  +   + GN AV +C IPS +  YI V SW +D V++     +G ++++
Sbjct:   121 VLREPYTVRVE-DQKTMRGNVAVFKCIIPSSVEAYITVVSWEKDTVSLV----SGSRFLI 175

Query:    76 LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQAS 110
              S+G LY+ +    DG  +YRC T ++ TGE++ S
Sbjct:   176 TSTGALYIKDVQNEDGLYNYRCITRHRYTGETRQS 210

GO:0007155 "cell adhesion" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0042327 "positive regulation of phosphorylation" evidence=IDA

GO:0007162 "negative regulation of cell adhesion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS;TAS

GO:0030426 "growth cone" evidence=ISS

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=IDA

GO:0070593 "dendrite self-avoidance" evidence=ISS

GO:0030424 "axon" evidence=ISS

GO:0016020 "membrane" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0007399 "nervous system development" evidence=TAS

MGI|MGI:1196281 Dscam "Down syndrome cell adhesion molecule" [Mus musculus (taxid:10090)]

 Score = 162 (62.1 bits), Expect = 2.7e-10, P = 2.7e-10
 Identities = 32/95 (33%), Positives = 57/95 (60%)

Query:    16 VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV 75
             V+++ Y + V  +   + GN AV +C IPS +  Y+ V SW +D V++     +G ++++
Sbjct:   121 VLREPYTVRVE-DQKTMRGNVAVFKCIIPSSVEAYVTVVSWEKDTVSLV----SGSRFLI 175

Query:    76 LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQAS 110
              S+G LY+ +    DG  +YRC T ++ TGE++ S
Sbjct:   176 TSTGALYIKDVQNEDGLYNYRCITRHRYTGETRQS 210

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IMP

GO:0007399 "nervous system development" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030424 "axon" evidence=IDA

GO:0030426 "growth cone" evidence=IDA

GO:0042327 "positive regulation of phosphorylation" evidence=ISO

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=ISO;IDA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IMP

GO:0070593 "dendrite self-avoidance" evidence=IMP

RGD|619992 Dscam "Down syndrome cell adhesion molecule" [Rattus norvegicus (taxid:10116)]

 Score = 162 (62.1 bits), Expect = 2.7e-10, P = 2.7e-10
 Identities = 32/95 (33%), Positives = 57/95 (60%)

Query:    16 VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV 75
             V+++ Y + V  +   + GN AV +C IPS +  Y+ V SW +D V++     +G ++++
Sbjct:   121 VLREPYTVRVE-DQKTMRGNVAVFKCIIPSSVEAYVTVVSWEKDTVSLV----SGSRFLI 175

Query:    76 LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQAS 110
              S+G LY+ +    DG  +YRC T ++ TGE++ S
Sbjct:   176 TSTGALYIKDVQNEDGLYNYRCITRHRYTGETRQS 210

GO:0005886 "plasma membrane" evidence=ISO;ISS

GO:0007155 "cell adhesion" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=ISO;ISS

GO:0007626 "locomotory behavior" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030424 "axon" evidence=ISO;ISS

GO:0030426 "growth cone" evidence=ISO;ISS

GO:0042327 "positive regulation of phosphorylation" evidence=ISO;ISS

GO:0048813 "dendrite morphogenesis" evidence=ISO

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=ISO;IMP

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=ISO

GO:0070593 "dendrite self-avoidance" evidence=ISO;ISS

UNIPROTKB|Q8TD84 DSCAML1 "Down syndrome cell adhesion molecule-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 156 (60.0 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 37/112 (33%), Positives = 61/112 (54%)

Query:    16 VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV 75
             V ++ Y + V  + ++  GN AV +C IPS + EY+ V SW +D V+I        ++ +
Sbjct:   122 VFREPYTVRVEDQRSM-RGNVAVFKCLIPSSVQEYVSVVSWEKDTVSIIPEH----RFFI 176

Query:    76 LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGKLKSLCT 127
                G LY+ +    D   +YRC T +K +GE++ S    RLS+T   +S+ T
Sbjct:   177 TYHGGLYISDVQKEDALSTYRCITKHKYSGETRQSN-GARLSVTDPAESIPT 227

GO:0016021 "integral to membrane" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IEA

GO:0070593 "dendrite self-avoidance" evidence=IEA

GO:0007409 "axonogenesis" evidence=NAS

GO:0009986 "cell surface" evidence=IDA

GO:0009953 "dorsal/ventral pattern formation" evidence=NAS

GO:0007420 "brain development" evidence=IDA

GO:0048704 "embryonic skeletal system morphogenesis" evidence=IDA

GO:0007417 "central nervous system development" evidence=NAS

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0001709 "cell fate determination" evidence=NAS

GO:0005886 "plasma membrane" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	129
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.71
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.67
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.66
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.65
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.65
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.62
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.61
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.61
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.6
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.6
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.59
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.58
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.57
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.57
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.57
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.56
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.56
KOG4222|consensus	1281		99.56
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.54
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.54
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.54
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.52
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.51
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.51
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.51
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.5
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.5
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.5
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.5
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.49
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.49
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.49
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.48
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.48
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.48
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.48
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.48
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.48
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.48
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.47
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.47
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.47
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.47
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.46
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.46
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.46
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.45
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.45
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.45
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.44
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.44
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.43
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.43
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.43
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.42
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.41
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.41
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.4
KOG3513|consensus	1051		99.4
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.39
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.39
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.38
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.36
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.35
KOG4221|consensus	1381		99.35
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.35
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.35
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.34
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.33
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.33
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.33
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.32
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.32
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.31
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.3
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.29
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.29
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.29
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.29
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.27
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.27
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.26
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.26
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.26
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.23
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.23
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.21
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.2
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.17
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.17
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.16
KOG4221|consensus	1381		99.14
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.14
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.13
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	99.11
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.09
KOG3513|consensus	1051		99.07
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.03
PHA02785	326	IL-beta-binding protein; Provisional	99.03
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	99.03
smart00409	86	IG Immunoglobulin.	99.01
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.01
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.0
KOG4194|consensus	873		98.98
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.97
PHA02826	227	IL-1 receptor-like protein; Provisional	98.95
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.93
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.91
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.9
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.89
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.85
PHA02826	227	IL-1 receptor-like protein; Provisional	98.81
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.81
PHA02785	326	IL-beta-binding protein; Provisional	98.8
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.79
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.79
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.76
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.75
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.73
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.72
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.72
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.71
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.67
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.62
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.62
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.57
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.56
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.56
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.51
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.5
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.5
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.48
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.47
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.47
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.46
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.45
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.45
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.44
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.42
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.41
PHA03376	221	BARF1; Provisional	98.38
KOG4222|consensus	1281		98.37
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.36
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.32
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.32
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.3
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.25
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.25
KOG4194|consensus	873		98.22
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.19
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.16
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.16
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.14
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.12
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.06
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.04
smart00406	81	IGv Immunoglobulin V-Type.	98.03
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.01
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	97.94
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.93
PHA02987	189	Ig domain OX-2-like protein; Provisional	97.93
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.89
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	97.82
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.75
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.64
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.62
smart00407	75	IGc1 Immunoglobulin C-Type.	97.6
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.54
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.53
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.52
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.52
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.43
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.35
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	97.34
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.31
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.26
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.23
KOG1480|consensus	909		97.05
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	97.05
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.0
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	96.99
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	96.97
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	96.96
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	96.57
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	96.38
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	96.15
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	96.11
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	95.78
PHA02865	338	MHC-like TNF binding protein; Provisional	94.8
PHA02633	63	hypothetical protein; Provisional	94.69
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	94.56
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	92.5
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	92.24
KOG4597|consensus	560		92.24
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	90.65
PHA02982	251	hypothetical protein; Provisional	89.34
KOG3515|consensus	741		89.03
PHA03052	69	Hypothetical protein; Provisional	88.97
KOG3515|consensus	741		85.19

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.71  E-value=3.1e-17  Score=107.94  Aligned_cols=73  Identities=22%  Similarity=0.380  Sum_probs=61.1

Q ss_pred             CCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEecccc
Q psy5694          34 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQ  113 (129)
Q Consensus        34 GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~  113 (129)
                      |++|+|.|.+.+.|+   +.++|++++..|.    .++||.++++|.|.|.+++.+|.| .|+|.|.|.+ |+...   .
T Consensus         1 G~~~~l~C~~~g~P~---p~v~W~k~~~~l~----~~~r~~~~~~g~L~I~~v~~~D~G-~Y~C~A~N~~-G~~~~---~   68 (73)
T cd05852           1 GGRVIIECKPKAAPK---PKFSWSKGTELLV----NNSRISIWDDGSLEILNITKLDEG-SYTCFAENNR-GKANS---T   68 (73)
T ss_pred             CCeEEEEEecceeCC---CEEEEEeCCEecc----cCCCEEEcCCCEEEECcCChhHCE-EEEEEEECCC-CceeE---E
Confidence            789999999998874   6799999987663    357999999999999999999997 9999999999 66433   3


Q ss_pred             eEEEE
Q psy5694         114 TRLSI  118 (129)
Q Consensus       114 ~~L~V  118 (129)
                      +.|+|
T Consensus        69 ~~l~~   73 (73)
T cd05852          69 GVLSV   73 (73)
T ss_pred             EEEEC
Confidence            46653

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.67  E-value=2.5e-16  Score=109.87  Aligned_cols=78  Identities=19%  Similarity=0.289  Sum_probs=65.0

Q ss_pred             eEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEE
Q psy5694          29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQ  108 (129)
Q Consensus        29 ~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k  108 (129)
                      +.|.+|++++|.|..|.+.++  +.+.|++++..+.   ..++|+.+.++|+|+|+||+.+|.|..|.|.|.|..+++.+
T Consensus        13 v~V~eG~~~~L~C~pP~g~P~--P~i~W~~~~~~~i---~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~~~~   87 (95)
T cd05845          13 VEVEEGDSVVLPCNPPKSAVP--LRIYWMNSDLLHI---TQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLRTIV   87 (95)
T ss_pred             eEEecCCCEEEEecCCCCCCC--CEEEEECCCCccc---cccccEEECCCceEEEEEEehhhCCCCeEEEEEcccccceE
Confidence            389999999999997666443  6799998873322   24789999999999999999999986799999999988866


Q ss_pred             ecc
Q psy5694         109 ASV  111 (129)
Q Consensus       109 ~S~  111 (129)
                      .+.
T Consensus        88 ~~~   90 (95)
T cd05845          88 QKE   90 (95)
T ss_pred             ecC
Confidence            665

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.66  E-value=2.8e-16  Score=109.75  Aligned_cols=89  Identities=20%  Similarity=0.421  Sum_probs=70.1

Q ss_pred             eeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEE
Q psy5694          19 QKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCR   98 (129)
Q Consensus        19 q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~   98 (129)
                      ..|..+..+.+.|.+|+.|+|.|..|.+.++  +.+.|++++..+... ....+++..++|+|+|++|+.+|.| .|.|.
T Consensus         3 ~~f~~~~~~~~~v~eG~~~~L~C~pP~g~P~--p~~~W~k~~~~~~~~-~d~r~~~~~~~G~L~fs~v~~~D~g-~Y~C~   78 (96)
T cd05727           3 DEFPLEERDEVKVKEGWGVVLFCDPPPHYPD--LSYRWLLNEFPNFIP-EDGRRFVSQTNGNLYIAKVEASDRG-NYSCF   78 (96)
T ss_pred             cccCcCCcCceeeeeCCcEEEeeCCCCCCCC--CEEEEEECCcccccc-cCCCeEEeCCCCcEEEeecCHhhCc-eeEEE
Confidence            3566666666589999999999999988654  679999998543211 2345666667999999999999997 99999


Q ss_pred             eecccCCeEEecc
Q psy5694          99 TVNKITGESQASV  111 (129)
Q Consensus        99 a~N~ltge~k~S~  111 (129)
                      |+|..+++.+.+.
T Consensus        79 A~n~~~~~~~~~~   91 (96)
T cd05727          79 VSSPSSTKSVFSK   91 (96)
T ss_pred             EEecccCCcccCC
Confidence            9999988866665

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.65  E-value=8.3e-16  Score=101.29  Aligned_cols=84  Identities=29%  Similarity=0.501  Sum_probs=66.3

Q ss_pred             eeeeeeEEEeCCeEEEEeeCC-CCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          24 NVNYEHNVILGNTAVLRCQIP-SYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp-~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      ++++. .+.+|++|.|.|.++ +.|   .+.+.|++++..+..   .+.++.+.++|.|.|.+++.+|+| .|+|.|.|.
T Consensus         2 ~p~~~-~~~~G~~v~l~C~~~~g~p---~p~i~W~k~g~~~~~---~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~N~   73 (86)
T cd05724           2 EPSDT-QVAVGEMAVLECSPPRGHP---EPTVSWRKDGQPLNL---DNERVRIVDDGNLLIAEARKSDEG-TYKCVATNM   73 (86)
T ss_pred             CCccE-EEeCCCCEEEEEECCCCCC---CCEEEEEECCEECCC---CCCCEEEccCCEEEEeECCcccCE-EEEEEEEec
Confidence            34556 889999999999985 444   357899999977743   356888888999999999999997 999999999


Q ss_pred             cCCeEEecccceEEEE
Q psy5694         103 ITGESQASVFQTRLSI  118 (129)
Q Consensus       103 ltge~k~S~~~~~L~V  118 (129)
                      . |.. .|. .+.|.|
T Consensus        74 ~-G~~-~s~-~~~l~V   86 (86)
T cd05724          74 V-GER-ESA-AARLSV   86 (86)
T ss_pred             c-Cce-eee-eEEEEC
Confidence            8 552 343 556654

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.65  E-value=3.9e-16  Score=101.65  Aligned_cols=74  Identities=26%  Similarity=0.498  Sum_probs=61.4

Q ss_pred             eCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEeccc
Q psy5694          33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVF  112 (129)
Q Consensus        33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~  112 (129)
                      +|++|.|.|.+.+.|+   |.++|++++..+.    .+.++.+.++|.|.|.+++.+|+| .|+|.|.|.+ |+...+  
T Consensus         1 eG~~v~l~C~~~g~P~---p~i~W~k~g~~~~----~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~A~N~~-G~~~~~--   69 (74)
T cd05745           1 EGQTVDFLCEAQGYPQ---PVIAWTKGGSQLS----VDRRHLVLSSGTLRISRVALHDQG-QYECQAVNIV-GSQRTV--   69 (74)
T ss_pred             CCCeEEEEeECCEecC---CEEEEEECCEECC----CCCCeEEccCCeEEEeeCCHHhCE-EEEEEEEeCC-CceeEE--
Confidence            5999999999998874   6799999997764    346788889999999999999998 9999999998 664443  


Q ss_pred             ceEEEE
Q psy5694         113 QTRLSI  118 (129)
Q Consensus       113 ~~~L~V  118 (129)
                       +.|.|
T Consensus        70 -~~L~V   74 (74)
T cd05745          70 -AQLTV   74 (74)
T ss_pred             -EEEeC
Confidence             35543

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.62  E-value=1.5e-15  Score=99.19  Aligned_cols=74  Identities=23%  Similarity=0.389  Sum_probs=61.2

Q ss_pred             EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEecccceEE
Q psy5694          37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRL  116 (129)
Q Consensus        37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L  116 (129)
                      |+|.|.+.+.|.   |.++|++|+..|...  .++||.+.++|.|.|.+++.+|+| .|+|.|.|.+ |. ..|. .+.|
T Consensus         1 a~l~C~~~G~P~---p~v~W~k~~~~~~~~--~~~~~~~~~~g~L~i~~~~~~D~G-~Y~C~a~N~~-G~-~~s~-~a~l   71 (74)
T cd05738           1 ATMLCAASGNPD---PEITWFKDFLPVDTT--SNGRIKQLRSGALQIENSEESDQG-KYECVATNSA-GT-RYSA-PANL   71 (74)
T ss_pred             CEEEEEEeEecC---CEEEEEECCEECccC--CCCCEEEcCCcEEEECCCChhhCE-EEEEEEECCC-Cc-eEcc-cEEE
Confidence            689999988874   689999999777431  457999999999999999999997 9999999998 55 3454 6788


Q ss_pred             EEe
Q psy5694         117 SIT  119 (129)
Q Consensus       117 ~V~  119 (129)
                      +|+
T Consensus        72 ~v~   74 (74)
T cd05738          72 YVR   74 (74)
T ss_pred             EEC
Confidence            874

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.61  E-value=4.6e-15  Score=100.59  Aligned_cols=88  Identities=22%  Similarity=0.340  Sum_probs=71.1

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEecc-----CCCCCCcce
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNA-----TPNDGYKSY   95 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv-----~~~D~g~~Y   95 (129)
                      |..+|++. .+.+|++++|.|.+.+.|+   +.+.|++|+..|...  .+.++.++++|.|.|.++     +.+|+| .|
T Consensus         2 f~~~P~~~-~~~~g~~v~l~C~v~g~P~---p~i~W~k~g~~l~~~--~~~~~~~~~~~~l~i~~v~~~~~~~~D~G-~Y   74 (95)
T cd05722           2 FLSEPSDI-VAVRGGPVVLNCSAEGEPP---PKIEWKKDGVLLNLV--SDERRQQLPNGSLLITSVVHSKHNKPDEG-FY   74 (95)
T ss_pred             cEECCCCe-EEcCCCCEEEeeecccCCC---CEEEEEECCeECccc--cCcceEEccCCeEEEeeeeccCCCCCcCE-EE
Confidence            66788888 8999999999999988773   678999999777542  345688889999999998     588997 99


Q ss_pred             EEEeecc-cCCeEEecccceEEEE
Q psy5694          96 RCRTVNK-ITGESQASVFQTRLSI  118 (129)
Q Consensus        96 ~C~a~N~-ltge~k~S~~~~~L~V  118 (129)
                      +|.|.|. + |+. .|. .++|+|
T Consensus        75 ~C~a~N~~~-G~~-~s~-~~~l~v   95 (95)
T cd05722          75 QCVAQNDSL-GSI-VSR-TARLTV   95 (95)
T ss_pred             EEEEECCcc-CcE-EEe-eeEEeC
Confidence            9999999 7 663 344 566654

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.61  E-value=6.1e-15  Score=99.23  Aligned_cols=86  Identities=21%  Similarity=0.389  Sum_probs=68.2

Q ss_pred             CCeEEEEeeCCCCCCCceeEeEEeecce-ee-ecc--cCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEe
Q psy5694          34 GNTAVLRCQIPSYMSEYIIVTSWIQDDV-NI-YLN--TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQA  109 (129)
Q Consensus        34 GntAvL~C~vp~~~~~~v~v~sW~~d~~-~i-~~~--~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~  109 (129)
                      |.+|.|.|.+.+.|.   +.+.|.+++. .+ .+.  ....+||.+.++|.|.|.|++.+|+| .|.|.|.|.. |+.  
T Consensus         1 G~~v~L~C~~~g~P~---p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G-~Y~C~a~N~~-G~~--   73 (90)
T cd05726           1 GRTVTFQCEATGNPQ---PAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVG-YYICQTLNVA-GSI--   73 (90)
T ss_pred             CCEEEEEEECCccCC---CEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCE-EEEEEEEcCC-Cce--
Confidence            789999999988774   5789999873 22 211  12357999999999999999999998 9999999998 664  


Q ss_pred             cccceEEEEecCCCCCCC
Q psy5694         110 SVFQTRLSITGKLKSLCT  127 (129)
Q Consensus       110 S~~~~~L~V~ep~~~~~~  127 (129)
                      +. .+.|.|.++...-|+
T Consensus        74 ~~-~~~l~V~~~~~~~~~   90 (90)
T cd05726          74 LT-KAYLEVTDVIADRPP   90 (90)
T ss_pred             EE-EEEEEEeecccCCCC
Confidence            33 569999988776664

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.60  E-value=5.9e-15  Score=99.67  Aligned_cols=86  Identities=20%  Similarity=0.318  Sum_probs=68.1

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEe
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a   99 (129)
                      .+.+.+.+. .+.+|+.+.|.|.+.+.|.   +.++|.+++..+.+    +.++. ..++.|.|.+++.+|+| .|.|.|
T Consensus         3 ~i~~~~~~~-~~~~G~~v~l~C~~~G~P~---P~v~W~k~~~~~~~----~~~~~-~~~~~L~I~~v~~~D~G-~Y~C~A   72 (88)
T cd05851           3 DINVKFKDT-YALKGQNVTLECFALGNPV---PVIRWRKILEPMPA----TAEIS-MSGAVLKIFNIQPEDEG-TYECEA   72 (88)
T ss_pred             ceEEccccE-EEeCCCcEEEEEEecccCC---CEEEEEECCcCCCC----CCEEe-cCCCEEEECcCChhhCE-EEEEEE
Confidence            456677788 9999999999999998884   67999999866632    34543 35678999999999998 999999


Q ss_pred             ecccCCeEEecccceEEEEe
Q psy5694         100 VNKITGESQASVFQTRLSIT  119 (129)
Q Consensus       100 ~N~ltge~k~S~~~~~L~V~  119 (129)
                      .|.+ |+...   .++|.|+
T Consensus        73 ~N~~-G~~~~---~~~l~V~   88 (88)
T cd05851          73 ENIK-GKDKH---QARVYVQ   88 (88)
T ss_pred             EcCC-CceEE---EEEEEEC
Confidence            9999 66433   4577764

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.60  E-value=4.4e-15  Score=101.30  Aligned_cols=81  Identities=23%  Similarity=0.350  Sum_probs=63.3

Q ss_pred             CeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEE----ccCccEEEeccCCCCCCcceEEEeecccCCeEEec
Q psy5694          35 NTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV----LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQAS  110 (129)
Q Consensus        35 ntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~v----lpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S  110 (129)
                      ++|+|.|.+.+.+. ....+.|++|++.|... ..++||.+    ..+|.|.|+|++.+|+| .|.|.|.|.+ ++.  +
T Consensus         1 ~~~~l~C~v~~d~~-l~~~~~W~~dg~~i~~~-~~~~~~~~~~~~~~~~~L~I~nv~~~dsG-~YtC~a~n~~-~~~--~   74 (85)
T cd05853           1 ESIVLPCQVSHDHS-LDIVFTWSFNGHLIDFQ-KDGDHFERVGGQDSAGDLMIRSIQLKHAG-KYVCMVQTSV-DKL--S   74 (85)
T ss_pred             CcEEEEEEeccCCC-CCcEEEEEECCEECccc-CCCccEEEeccCCCCCcEEEecCCHHHCE-EEEEEEEccc-Cce--E
Confidence            47899999976432 23568999999888532 34568877    36799999999999997 9999999998 553  4


Q ss_pred             ccceEEEEecCC
Q psy5694         111 VFQTRLSITGKL  122 (129)
Q Consensus       111 ~~~~~L~V~ep~  122 (129)
                      . .|.|+|..|+
T Consensus        75 a-~a~L~V~~pP   85 (85)
T cd05853          75 A-AADLIVRGPP   85 (85)
T ss_pred             E-EEEEEEecCC
Confidence            4 5699999874

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.59  E-value=1.3e-14  Score=100.15  Aligned_cols=89  Identities=21%  Similarity=0.265  Sum_probs=72.5

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEc---cCccEEEeccCCCCCCcceEE
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL---SSGDLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl---psG~L~I~nv~~~D~g~~Y~C   97 (129)
                      |...+++. .|..|+.+.|.|.+.+.|+   +.+.|+||+..|.+    +.|+.+.   .++.|.|.+++.+|.| .|.|
T Consensus         3 ~~~~p~~~-~v~~G~~v~l~C~~~G~p~---p~v~W~kdg~~l~~----~~~~~~~~~~~~s~L~I~~~~~~D~G-~Ytc   73 (98)
T cd05762           3 IIQFPEDM-KVRAGESVELFCKVTGTQP---ITCTWMKFRKQIQE----GEGIKIENTENSSKLTITEGQQEHCG-CYTL   73 (98)
T ss_pred             eEECCcCE-EEECCCEEEEEEEEcccCC---CceEEEECCEEecC----CCcEEEEecCCeeEEEECCCChhhCE-EEEE
Confidence            45566777 8999999999999987774   57999999988843    4577765   3567999999999998 9999


Q ss_pred             EeecccCCeEEecccceEEEEecCC
Q psy5694          98 RTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        98 ~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      .|.|.+ |+...   .+.|.|.+++
T Consensus        74 ~a~N~~-G~~~~---~~~l~V~~~P   94 (98)
T cd05762          74 EVENKL-GSRQA---QVNLTVVDKP   94 (98)
T ss_pred             EEEcCC-CceeE---EEEEEEecCC
Confidence            999999 77444   4589998775

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.58  E-value=6.1e-15  Score=95.55  Aligned_cols=65  Identities=20%  Similarity=0.414  Sum_probs=56.7

Q ss_pred             CCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeE
Q psy5694          34 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGES  107 (129)
Q Consensus        34 GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~  107 (129)
                      |+++.|.|.+-+.|+   +.++|++++..|.    .+.|+.+.++|.|.|.+|+.+|+| .|+|.|.|.+ |..
T Consensus         1 G~~v~L~C~~~g~P~---p~v~W~k~~~~~~----~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~a~N~~-G~~   65 (73)
T cd04969           1 GGDVIIECKPKAAPK---PTISWSKGTELLT----NSSRICIWPDGSLEILNVTKSDEG-KYTCFAENFF-GKA   65 (73)
T ss_pred             CCeEEEEEeeeEcCC---CEEEEEECCEEcc----cCCCEEECCCCeEEEccCChhHCE-EEEEEEECCC-Cce
Confidence            789999999877764   5799999997774    357899999999999999999998 9999999999 663

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.57  E-value=9.1e-15  Score=97.74  Aligned_cols=76  Identities=17%  Similarity=0.325  Sum_probs=64.1

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEee
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      |...+++. .+..|++|.|.|.+.+.|.   +.+.|++++..|.    .++++.+ .+|.|.|.+++.+|+| .|+|.|.
T Consensus         2 ~~~~p~~~-~~~~G~~~~l~C~~~g~p~---p~v~W~k~g~~~~----~~~~~~~-~~~~L~i~~~~~~D~G-~Y~C~a~   71 (85)
T cd05728           2 WLKVISDT-EADIGSSLRWECKASGNPR---PAYRWLKNGQPLA----SENRIEV-EAGDLRITKLSLSDSG-MYQCVAE   71 (85)
T ss_pred             ccccCCcc-EEcCCCcEEEEEEeeEeCC---CEEEEEECCEECC----CCCeEEE-eCCEEEEeeCCHHHCE-EEEEEEE
Confidence            55677788 9999999999999988874   6799999997773    2456655 6889999999999997 9999999


Q ss_pred             cccCCeE
Q psy5694         101 NKITGES  107 (129)
Q Consensus       101 N~ltge~  107 (129)
                      |.+ |..
T Consensus        72 N~~-G~~   77 (85)
T cd05728          72 NKH-GTI   77 (85)
T ss_pred             CCC-CeE
Confidence            998 664

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.57  E-value=1.3e-14  Score=96.93  Aligned_cols=82  Identities=18%  Similarity=0.233  Sum_probs=64.0

Q ss_pred             EeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          23 INVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        23 ~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      ..+++. .+.+|.+|.|.|.+.+.|.   +.++|.+++..+.+    ..++. ..+|.|.|.+++.+|+| .|+|.|.|.
T Consensus         6 ~~p~~~-~~~~g~~v~l~C~~~g~P~---p~v~W~k~~~~~~~----~~~~~-~~~~~L~i~~v~~~D~G-~Y~C~a~N~   75 (88)
T cd04968           6 VFPKDT-YALKGQNVTLECFALGNPV---PQIKWRKVDGSMPS----SAEIS-MSGAVLKIPNIQFEDEG-TYECEAENI   75 (88)
T ss_pred             ECCCce-EEeCCCcEEEEEEeeEeCC---CEEEEEECCCcCCC----ccEEE-EeCCEEEECCCCcccCE-EEEEEEEEC
Confidence            445666 8899999999999987774   67999998855532    23332 67899999999999997 999999999


Q ss_pred             cCCeEEecccceEEEE
Q psy5694         103 ITGESQASVFQTRLSI  118 (129)
Q Consensus       103 ltge~k~S~~~~~L~V  118 (129)
                      + |....   .++|+|
T Consensus        76 ~-G~~~~---~~~l~V   87 (88)
T cd04968          76 K-GKDTH---QGRIYV   87 (88)
T ss_pred             C-CcEEE---EEEEEE
Confidence            8 66433   447776

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.57  E-value=9e-15  Score=94.75  Aligned_cols=71  Identities=20%  Similarity=0.432  Sum_probs=58.1

Q ss_pred             eEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEecccceE
Q psy5694          36 TAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTR  115 (129)
Q Consensus        36 tAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~  115 (129)
                      .+.|.|.+.+.|+   |.++|++++..+.+    +.++.+..+|.|.|.+++.+|+| .|+|.|.|.+ |+...+   +.
T Consensus         1 ~v~l~C~~~G~P~---p~v~W~k~g~~~~~----~~~~~~~~~~~l~i~~v~~~D~G-~Y~C~A~N~~-G~~~~~---~~   68 (71)
T cd05723           1 DVIFECEVTGKPT---PTVKWVKNGDMVIP----SDYFKIVKEHNLQVLGLVKSDEG-FYQCIAENDV-GNVQAS---AQ   68 (71)
T ss_pred             CEEEEEEEEEeCC---CEEEEEECCeECCC----CCCEEEEecCCEEEEcCCcccCE-EEEEEEEcCC-CEEEEE---EE
Confidence            3789999988874   67999999977643    46788889999999999999997 9999999999 774433   36


Q ss_pred             EEE
Q psy5694         116 LSI  118 (129)
Q Consensus       116 L~V  118 (129)
                      |.|
T Consensus        69 L~V   71 (71)
T cd05723          69 LII   71 (71)
T ss_pred             EEC
Confidence            654

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.56  E-value=1.8e-14  Score=97.20  Aligned_cols=75  Identities=24%  Similarity=0.273  Sum_probs=61.7

Q ss_pred             eeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc---CccEEEeccCCCCCCcceEEEeeccc
Q psy5694          27 YEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        27 ~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp---sG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      +.+.|..|+++.|.|.+.+.|+   |.++|++++..|..   .++||.+..   .+.|.|.+++.+|+| .|.|.|.|.+
T Consensus         3 ~~~~v~~G~~v~l~c~~~G~P~---P~v~W~k~~~~i~~---~~~r~~~~~~~~~~~L~I~~~~~~D~G-~Y~c~a~N~~   75 (86)
T cd05894           3 NTIVVVAGNKLRLDVPISGEPA---PTVTWSRGDKAFTE---TEGRVRVESYKDLSSFVIEGAEREDEG-VYTITVTNPV   75 (86)
T ss_pred             CEEEEEcCCEEEEEeeEeecCC---CeEEEEECCEECcc---CCCeEEEEEcCCeEEEEECCCccCcCE-EEEEEEEeCC
Confidence            3458899999999999998874   68999999988753   246787753   367999999999997 9999999999


Q ss_pred             CCeEEe
Q psy5694         104 TGESQA  109 (129)
Q Consensus       104 tge~k~  109 (129)
                       |+...
T Consensus        76 -G~~~~   80 (86)
T cd05894          76 -GEDHA   80 (86)
T ss_pred             -CcEEE
Confidence             76443

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.56  E-value=1.8e-14  Score=94.21  Aligned_cols=75  Identities=27%  Similarity=0.450  Sum_probs=58.7

Q ss_pred             CCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEecccc
Q psy5694          34 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQ  113 (129)
Q Consensus        34 GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~  113 (129)
                      |+++.|.|.+.+.|.   |.++|.+|+..|... ....|+. ..+|.|.|.+++.+|+| .|+|.|.|.. |+...+   
T Consensus         1 G~~v~l~C~~~G~P~---p~i~W~k~g~~i~~~-~~~~~~~-~~~~~L~I~~~~~~D~G-~Y~C~a~N~~-G~~~~~---   70 (76)
T cd05867           1 GETARLDCQVEGIPT---PNITWSINGAPIEGT-DPDPRRH-VSSGALILTDVQPSDTA-VYQCEARNRH-GNLLAN---   70 (76)
T ss_pred             CCeEEEEEEeeEeCC---CeEEEEECCEECCCC-CCCceEE-eeCCEEEECCCChhhCE-EEEEEEECCC-CeEEEE---
Confidence            789999999988874   679999999877542 1234554 46899999999999997 9999999998 774333   


Q ss_pred             eEEEE
Q psy5694         114 TRLSI  118 (129)
Q Consensus       114 ~~L~V  118 (129)
                      +.|.|
T Consensus        71 ~~l~V   75 (76)
T cd05867          71 AHVHV   75 (76)
T ss_pred             EEEEE
Confidence            46554

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>KOG4222|consensus

Probab=99.56  E-value=7.2e-15  Score=135.50  Aligned_cols=103  Identities=25%  Similarity=0.432  Sum_probs=90.6

Q ss_pred             eeeeEEeeeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCC
Q psy5694          12 PMLPVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDG   91 (129)
Q Consensus        12 ~v~AVv~q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~   91 (129)
                      ...|+++.+|++++.+. .+..|+.|+|+|.-|...++  +.++|.||+.++..  ....++.+...|.|.|.||+.+|+
T Consensus       125 L~vavlrddfrv~prd~-~~a~ge~avlEcgpP~ghpe--ptvSw~Kdg~pl~~--~~~~~~~lisgG~LlIsnvrksD~  199 (1281)
T KOG4222|consen  125 LIVAVLRDDFRVSPRDV-QAAVGEEAVLECGPPRGHPE--PTVSWVKDGKPLDH--YDVPIIALISGGNLLISNVRKSDE  199 (1281)
T ss_pred             EEEEEechhcccCcccc-cccccceeEEeccCCCCCCC--CcceeecCCCcccc--ccceeEEEecCCcEEEeccccCCC
Confidence            35689999999999997 99999999999999998775  78999999976642  245677788999999999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEecCCC
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSITGKLK  123 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~~  123 (129)
                      | +|.|++.|.. || |+|. +|+|+|+|+..
T Consensus       200 G-tY~CVatNmv-G~-ReS~-~A~lsv~e~P~  227 (1281)
T KOG4222|consen  200 G-TYACVATNMV-GE-RESI-PARLSVQEKPW  227 (1281)
T ss_pred             c-eeeeeecccc-cc-cccc-cceeeeccCCc
Confidence            8 9999999987 88 7887 99999998765

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.54  E-value=3.8e-14  Score=97.92  Aligned_cols=87  Identities=23%  Similarity=0.407  Sum_probs=66.5

Q ss_pred             eEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEee-cceeeecccCCCceEEEccC----ccEEEeccCCCCCCcceE
Q psy5694          22 EINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQ-DDVNIYLNTDTGGKYVVLSS----GDLYVFNATPNDGYKSYR   96 (129)
Q Consensus        22 ~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~-d~~~i~~~~~~~~ry~vlps----G~L~I~nv~~~D~g~~Y~   96 (129)
                      +..+.+. .+..|.+|.|.|.+.+.|.  .+.++|++ ++..|..   .+.|+.+..+    +.|.|.+++.+|.| .|+
T Consensus         4 ~~~p~~~-~v~~G~~v~l~C~v~G~P~--~p~i~W~~~~g~~l~~---~~~r~~v~~~~~~~~~L~I~~v~~~D~G-~Yt   76 (96)
T cd05865           4 DIVPSQG-EISVGESKFFLCQVAGEAK--DKDISWFSPNGEKLTP---NQQRISVVRNDDYSSTLTIYNANIDDAG-IYK   76 (96)
T ss_pred             EEeCCcc-EECCCCeEEEEEEEeCCCC--CCEEEEECCCCcCccc---cCCeEEEEeCCCCceEEEEeccChhhCE-EEE
Confidence            4566777 7899999999999988774  25799998 6665532   2457766533    67999999999997 999


Q ss_pred             EEeecccCCeEEecccceEEEE
Q psy5694          97 CRTVNKITGESQASVFQTRLSI  118 (129)
Q Consensus        97 C~a~N~ltge~k~S~~~~~L~V  118 (129)
                      |.|.|...|+...|.   .|.|
T Consensus        77 C~A~N~~~g~~~~s~---~l~v   95 (96)
T cd05865          77 CVVSNEDEGESEATV---NVKI   95 (96)
T ss_pred             EEEEcCCCCcEEEEE---EEEE
Confidence            999999878854443   5554

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.54  E-value=9.5e-14  Score=92.59  Aligned_cols=90  Identities=22%  Similarity=0.374  Sum_probs=67.6

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc-cCCCceEEEccCccEEEecc-----CCCCCCcc
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-TDTGGKYVVLSSGDLYVFNA-----TPNDGYKS   94 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~-~~~~~ry~vlpsG~L~I~nv-----~~~D~g~~   94 (129)
                      +...+++. .+.+|+++.|.|.+.+.|.   +.++|++|+..|... .....+..++++|.|.+.++     +.+|+| .
T Consensus         4 i~~~p~~~-~v~~G~~~~l~C~~~g~P~---p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G-~   78 (100)
T cd07693           4 IVEHPSDL-IVSKGDPATLNCKAEGRPT---PTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEG-V   78 (100)
T ss_pred             EEecCcee-EEcCCCeEEEEeeCCcCCC---CEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCE-E
Confidence            45567777 8999999999999998874   579999999777431 11245666788998766554     789997 9


Q ss_pred             eEEEeecccCCeEEecccceEEEE
Q psy5694          95 YRCRTVNKITGESQASVFQTRLSI  118 (129)
Q Consensus        95 Y~C~a~N~ltge~k~S~~~~~L~V  118 (129)
                      |+|.|.|.+ |+. .|. .+.|.|
T Consensus        79 Y~C~a~N~~-G~~-~s~-~~~l~v   99 (100)
T cd07693          79 YVCVAHNSL-GEA-VSR-NASLEV   99 (100)
T ss_pred             EEEEEEccc-cce-ecc-eEEEEe
Confidence            999999999 652 343 556665

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.54  E-value=3.8e-14  Score=95.81  Aligned_cols=78  Identities=19%  Similarity=0.403  Sum_probs=62.2

Q ss_pred             CCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc--C-----ccEEEeccCCCCCCcceEEEeecccCCe
Q psy5694          34 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS--S-----GDLYVFNATPNDGYKSYRCRTVNKITGE  106 (129)
Q Consensus        34 GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp--s-----G~L~I~nv~~~D~g~~Y~C~a~N~ltge  106 (129)
                      |+++.|.|.+.+.|+   +.+.|++++..|.+   ..+||.+..  .     ..|.|.++..+|.| .|.|.|.|.+ |+
T Consensus         1 g~~~~l~C~~~g~p~---~~i~W~k~~~~i~~---~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G-~YtC~A~N~~-G~   72 (88)
T cd05735           1 GQKKEMSCTAHGEKP---IIVRWEKEDRIINP---EMSRYLVSTKEVGDEVISTLQILPTVREDSG-FFSCHAINSY-GE   72 (88)
T ss_pred             CCeEEEEEEEECCCC---CEEEEeeCCEECCC---CCCcEEEEEecCCCcEEEEEEECCCCcccCE-EEEEEEEcCC-Cc
Confidence            789999999987763   57999999977743   236887653  2     56999999999998 9999999999 77


Q ss_pred             EEecccceEEEEecCC
Q psy5694         107 SQASVFQTRLSITGKL  122 (129)
Q Consensus       107 ~k~S~~~~~L~V~ep~  122 (129)
                      ...   .+.|+|.+++
T Consensus        73 ~~~---~~~L~V~~~P   85 (88)
T cd05735          73 DRG---IIQLTVQEPP   85 (88)
T ss_pred             ceE---EEEEEEeCCC
Confidence            443   4589998764

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.52  E-value=2.8e-14  Score=94.56  Aligned_cols=71  Identities=21%  Similarity=0.374  Sum_probs=56.5

Q ss_pred             EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccC--c--cEEEeccCCCCCCcceEEEeecccCCeEEeccc
Q psy5694          37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS--G--DLYVFNATPNDGYKSYRCRTVNKITGESQASVF  112 (129)
Q Consensus        37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlps--G--~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~  112 (129)
                      +.|+|.+.+.|+   |.+.|++|+..|..   .++||.+..+  |  .|.|.+++.+|+| .|+|.|.|.+ |+...   
T Consensus         1 v~l~C~v~G~P~---P~i~W~k~~~~i~~---~~~r~~~~~~~~g~~~L~I~~~~~~D~G-~Y~C~A~N~~-G~~~~---   69 (75)
T cd05892           1 VKLECQISAIPP---PKIFWKRNNEMVQY---NTDRISLYQDNSGRVTLLIKNVNKKDAG-WYTVSAVNEA-GVATC---   69 (75)
T ss_pred             CEEEEEEEecCC---CeEEEEECCEECcC---CCCeEEEEEcCCCcEEEEECCCChhhCE-EEEEEEEcCc-CeEEE---
Confidence            479999998884   68999999987743   2468888654  3  6999999999998 9999999998 77433   


Q ss_pred             ceEEEE
Q psy5694         113 QTRLSI  118 (129)
Q Consensus       113 ~~~L~V  118 (129)
                      .++|.|
T Consensus        70 ~a~L~V   75 (75)
T cd05892          70 HARLDV   75 (75)
T ss_pred             EEEEeC
Confidence            457764

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.51  E-value=4.5e-14  Score=92.82  Aligned_cols=75  Identities=17%  Similarity=0.304  Sum_probs=58.5

Q ss_pred             CCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc---CccEEEeccCCCCCCcceEEEeecccCCeEEec
Q psy5694          34 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGESQAS  110 (129)
Q Consensus        34 GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp---sG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S  110 (129)
                      |+++.|.|.+.+.|.   |.++|++++..+.    .+.|+.+..   .+.|.|.|++.+|+| .|.|.|.|.+ |.....
T Consensus         1 G~~v~l~C~~~g~P~---p~v~W~~~~~~~~----~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~~-G~~~~~   71 (78)
T cd05743           1 GETVEFTCVATGVPT---PIINWRLNWGHVP----DSARVSITSEGGYGTLTIRDVKESDQG-AYTCEAINTR-GMVFGI   71 (78)
T ss_pred             CCEEEEEEEEEEecC---CEEEEEECCeECC----CCCCEEEEECCCEEEEEECCCChHHCE-EEEEEEEecC-CEEEec
Confidence            789999999988774   6799999986663    246776654   367999999999997 9999999998 764444


Q ss_pred             ccceEEEE
Q psy5694         111 VFQTRLSI  118 (129)
Q Consensus       111 ~~~~~L~V  118 (129)
                      . .+.|+|
T Consensus        72 ~-~~~~~~   78 (78)
T cd05743          72 P-DGILTV   78 (78)
T ss_pred             c-cEEEEC
Confidence            4 555543

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.51  E-value=5.2e-14  Score=90.11  Aligned_cols=69  Identities=23%  Similarity=0.449  Sum_probs=55.6

Q ss_pred             EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEecccceEE
Q psy5694          37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRL  116 (129)
Q Consensus        37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L  116 (129)
                      |.|.|.+.+.|+   +.+.|.+++..+     ..+|+.+.+++.|.|.+++.+|+| .|.|.|.|.+ |+...   .+.|
T Consensus         1 v~l~C~~~g~P~---p~v~W~k~~~~~-----~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~~-G~~~~---~~~l   67 (69)
T cd05725           1 VEFQCEVGGDPV---PTVLWRKEDGEL-----PKGRAEILDDKSLKIRNVTAGDEG-SYTCEAENMV-GKIEA---SASL   67 (69)
T ss_pred             CEEEEECccCCC---CEEEEEECCccC-----CCCcEEEeeCCEEEECcCChhHCE-EEEEEEEcCC-CcEEE---EEEE
Confidence            579999988774   579999997555     246888889999999999999997 9999999998 66433   3355


Q ss_pred             EE
Q psy5694         117 SI  118 (129)
Q Consensus       117 ~V  118 (129)
                      .|
T Consensus        68 ~V   69 (69)
T cd05725          68 TV   69 (69)
T ss_pred             EC
Confidence            54

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.51  E-value=1.3e-13  Score=93.15  Aligned_cols=79  Identities=24%  Similarity=0.451  Sum_probs=63.0

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc-cEEEeccCCCCCCcceEEEeecccCCeEE
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG-DLYVFNATPNDGYKSYRCRTVNKITGESQ  108 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG-~L~I~nv~~~D~g~~Y~C~a~N~ltge~k  108 (129)
                      .+..|++|.|.|.+.+.|.   +.+.|.+++..|.+   .+.+|....+| .|.|.+++.+|+| .|+|.|.|.+ |...
T Consensus        14 ~~~~G~~v~L~C~~~g~P~---p~v~W~k~g~~~~~---~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~~-G~~~   85 (95)
T cd05730          14 TANLGQSVTLACDADGFPE---PTMTWTKDGEPIES---GEEKYSFNEDGSEMTILDVDKLDEA-EYTCIAENKA-GEQE   85 (95)
T ss_pred             EEeCCCCEEEEEeccEeCC---CEEEEEECCEECcC---CCCEEEEeCCCCEEEECCCChhhCE-EEEEEEEcCC-CeEE
Confidence            6789999999999988774   57899999977743   24677766655 5999999999997 9999999999 6643


Q ss_pred             ecccceEEEEe
Q psy5694         109 ASVFQTRLSIT  119 (129)
Q Consensus       109 ~S~~~~~L~V~  119 (129)
                      .   .+.|.|.
T Consensus        86 ~---~~~L~V~   93 (95)
T cd05730          86 A---EIHLKVF   93 (95)
T ss_pred             E---EEEEEEE
Confidence            3   3466664

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.50  E-value=1.7e-13  Score=93.68  Aligned_cols=78  Identities=18%  Similarity=0.325  Sum_probs=60.7

Q ss_pred             EeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--eeeecc-cCCCceEEEcc---CccEEEeccCCCCCCcceE
Q psy5694          23 INVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VNIYLN-TDTGGKYVVLS---SGDLYVFNATPNDGYKSYR   96 (129)
Q Consensus        23 ~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~~i~~~-~~~~~ry~vlp---sG~L~I~nv~~~D~g~~Y~   96 (129)
                      ..+.+. .+.+|++|+|.|.+.+.|.   +.++|.+++  ..+... ...++||.+..   ++.|.|.+|+.+|+| .|.
T Consensus         6 ~~~~~~-~~~~G~~v~l~C~~~G~P~---p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G-~Y~   80 (98)
T cd05870           6 IQLKNE-TTVENGAATLSCKAEGEPI---PEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSG-RYD   80 (98)
T ss_pred             EeeccE-EEcCCCcEEEEEecccCCC---CeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCE-EEE
Confidence            446677 8999999999999998874   679999953  344211 12356888864   357999999999998 999


Q ss_pred             EEeecccCCe
Q psy5694          97 CRTVNKITGE  106 (129)
Q Consensus        97 C~a~N~ltge  106 (129)
                      |.|.|.+ |.
T Consensus        81 C~A~N~~-G~   89 (98)
T cd05870          81 CEAASRI-GG   89 (98)
T ss_pred             EEEeccC-Cc
Confidence            9999999 54

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.50  E-value=1.4e-13  Score=94.55  Aligned_cols=76  Identities=22%  Similarity=0.449  Sum_probs=62.4

Q ss_pred             eEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeec-ceeeecccCCCceEEEccCc---cEEEeccCCCCCCcceEE
Q psy5694          22 EINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD-DVNIYLNTDTGGKYVVLSSG---DLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        22 ~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d-~~~i~~~~~~~~ry~vlpsG---~L~I~nv~~~D~g~~Y~C   97 (129)
                      ...+.+. .+..|++|.|.|.+.+.|.    .+.|+++ +..+.    .+.|+.+..+|   .|.|.+++.+|+| .|+|
T Consensus         4 ~~~~~~~-~v~~G~~v~l~C~~~G~P~----~v~W~k~~g~~~~----~~~r~~~~~~g~~~~L~I~~v~~~D~G-~Y~C   73 (92)
T cd05866           4 SISLSKV-ELSVGESKFFTCTAIGEPE----SIDWYNPQGEKIV----SSQRVVVQKEGVRSRLTIYNANIEDAG-IYRC   73 (92)
T ss_pred             EEEecce-EEcCCCeEEEEEEEEEeCC----eEEEEeCCCeEec----CCCCEEEEeCCCeeEEEEecCChHHCE-EEEE
Confidence            4566777 8999999999999988773    4799985 45663    34789888887   7999999999997 9999


Q ss_pred             EeecccCCeEE
Q psy5694          98 RTVNKITGESQ  108 (129)
Q Consensus        98 ~a~N~ltge~k  108 (129)
                      .|.|.. |+..
T Consensus        74 ~A~N~~-G~~~   83 (92)
T cd05866          74 QATDAK-GQTQ   83 (92)
T ss_pred             EEEcCC-CcEE
Confidence            999997 7744

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.50  E-value=1.1e-13  Score=93.38  Aligned_cols=77  Identities=14%  Similarity=0.209  Sum_probs=63.5

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc---CccEEEeccCCCCCCcceEE
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS---SGDLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp---sG~L~I~nv~~~D~g~~Y~C   97 (129)
                      +...+++. .+..|+++.|.|.+.+.|.   +.+.|++++..|.    .+.||.+.+   ++.|.|.+++.+|+| .|.|
T Consensus         6 ~~~~p~~~-~~~~G~~~~L~C~~~g~P~---p~v~W~k~g~~l~----~~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~C   76 (92)
T cd05747           6 ILTKPRSL-TVSEGESARFSCDVDGEPA---PTVTWMREGQIIV----SSQRHQITSTEYKSTFEISKVQMSDEG-NYTV   76 (92)
T ss_pred             ccccCccE-EEeCCCcEEEEEEEeecCC---CEEEEEECCEECC----CCCcEEEEEcCCeeEEEECCCCcccCE-eEEE
Confidence            34456777 9999999999999998884   5699999997764    346787765   458999999999998 9999


Q ss_pred             EeecccCCeE
Q psy5694          98 RTVNKITGES  107 (129)
Q Consensus        98 ~a~N~ltge~  107 (129)
                      .|.|.+ |+.
T Consensus        77 ~a~N~~-G~~   85 (92)
T cd05747          77 VVENSE-GKQ   85 (92)
T ss_pred             EEEcCC-CCE
Confidence            999999 653

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.50  E-value=1.4e-13  Score=91.49  Aligned_cols=81  Identities=23%  Similarity=0.391  Sum_probs=60.4

Q ss_pred             CeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceE----EEccCccEEEeccCCCCCCcceEEEeecccCCeEEec
Q psy5694          35 NTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKY----VVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQAS  110 (129)
Q Consensus        35 ntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry----~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S  110 (129)
                      .++.|.|.+.+.|... ..+.|.+|+..|... ..+.+|    ....+|.|.|.+++.+|+| .|+|.|.|.+ |+.  +
T Consensus         1 e~~~L~C~~~g~P~p~-i~~~W~~~g~~i~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~n~~-g~~--~   74 (85)
T cd04970           1 ESITLQCHASHDPTLD-LTFTWSFNGVPIDFD-KDGGHYRRVGGKDSNGDLMIRNAQLKHAG-KYTCTAQTVV-DSL--S   74 (85)
T ss_pred             CcEEEEEEEecCCCCC-eEEEEEECCeEeecc-CCCccEEEEecccccceEEEccCCHHhCe-eeEEEEecCC-CcE--E
Confidence            3689999998776532 247999999877432 122333    3346899999999999998 9999999988 653  3


Q ss_pred             ccceEEEEecCC
Q psy5694         111 VFQTRLSITGKL  122 (129)
Q Consensus       111 ~~~~~L~V~ep~  122 (129)
                      . .++|.|..|+
T Consensus        75 ~-~~~l~V~~pP   85 (85)
T cd04970          75 A-SADLIVRGPP   85 (85)
T ss_pred             E-EEEEEEECCC
Confidence            3 5699999863

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.49  E-value=6.7e-14  Score=90.04  Aligned_cols=63  Identities=22%  Similarity=0.404  Sum_probs=53.8

Q ss_pred             EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEE
Q psy5694          37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQ  108 (129)
Q Consensus        37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k  108 (129)
                      +.|.|.+.+.|.   +.++|++|+..|.    .++||.+.++|.|.|.+++.+|+| .|.|.|.|.+ |+..
T Consensus         1 v~L~C~~~g~P~---p~i~W~k~g~~~~----~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~N~~-G~~~   63 (69)
T cd05746           1 VQIPCSAQGDPE---PTITWNKDGVQVT----ESGKFHISPEGYLAIRDVGVADQG-RYECVARNTI-GYAS   63 (69)
T ss_pred             CEeEecceEeCC---CEEEEEECCEECC----CCCCEEECCCCEEEECcCChhhCE-EEEEEEECCC-CcEE
Confidence            469999988774   5799999997774    347899999999999999999997 9999999999 6643

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.49  E-value=1.6e-13  Score=93.57  Aligned_cols=77  Identities=16%  Similarity=0.237  Sum_probs=61.9

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc-CccEEEeccCCCCCCcceEEEeecccCCeEE
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS-SGDLYVFNATPNDGYKSYRCRTVNKITGESQ  108 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp-sG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k  108 (129)
                      .|.+|+++.|.|.+.+.    .+.++|.+++..+.     .+|+.+.. ++.|.|.+++.+|+| .|+|.|.|.+ |+ .
T Consensus        14 ~v~~g~~v~l~C~a~g~----~p~i~W~kng~~l~-----~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~~-G~-~   81 (91)
T cd05740          14 PPEDNQPVTLTCEAEGQ----ATYIWWVNNGSLLV-----PPRLQLSNDNRTLTFNNVTRSDTG-HYQCEASNEV-SN-M   81 (91)
T ss_pred             ccccCCcEEEEEEeCCC----CCEEEEEECCEECC-----CCCEEEeCCCCEEEECcCChhhCE-EEEEEEEcCC-CC-E
Confidence            67899999999999876    36799999997663     24666654 568999999999997 9999999999 66 3


Q ss_pred             ecccceEEEEe
Q psy5694         109 ASVFQTRLSIT  119 (129)
Q Consensus       109 ~S~~~~~L~V~  119 (129)
                      .|. +..|.|+
T Consensus        82 ~S~-~~~L~V~   91 (91)
T cd05740          82 TSD-PYILNVN   91 (91)
T ss_pred             Eee-eEEEEeC
Confidence            454 6778774

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.49  E-value=7e-14  Score=92.41  Aligned_cols=71  Identities=18%  Similarity=0.278  Sum_probs=56.8

Q ss_pred             EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc----cEEEeccCCCCCCcceEEEeecccCCeEEeccc
Q psy5694          37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG----DLYVFNATPNDGYKSYRCRTVNKITGESQASVF  112 (129)
Q Consensus        37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG----~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~  112 (129)
                      +.|+|.+.+.|.   |.+.|.+|+..|..   ..+||.+..++    .|.|.+++.+|+| .|.|.|.|.+ |+.  ++ 
T Consensus         1 v~l~C~v~G~P~---P~v~W~k~~~~l~~---~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~A~N~~-G~~--~~-   69 (75)
T cd05893           1 VRLECRVSGVPH---PQIFWKKENESLTH---NTDRVSMHQDNCGYICLLIQGATKEDAG-WYTVSAKNEA-GIV--SC-   69 (75)
T ss_pred             CEEEEEEeEecC---CEEEEEECCEECCC---CCCeEEEEEcCCCEEEEEECCCCHHHCE-EEEEEEEcCC-CEE--EE-
Confidence            479999999884   68999999977743   34688886554    5999999999997 9999999999 774  33 


Q ss_pred             ceEEEE
Q psy5694         113 QTRLSI  118 (129)
Q Consensus       113 ~~~L~V  118 (129)
                      .++|.|
T Consensus        70 ~a~L~V   75 (75)
T cd05893          70 TARLDV   75 (75)
T ss_pred             EEEEeC
Confidence            457764

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.48  E-value=2.2e-13  Score=89.82  Aligned_cols=74  Identities=22%  Similarity=0.334  Sum_probs=56.9

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEE-ccCccEEEeccCCCCCCcceEEEeecccCCeEE
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV-LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQ  108 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~v-lpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k  108 (129)
                      .|-.|+++.|.|.+.+.|+   +.++|++|+..|.+.. ...++.+ ...+.|.|.+++.+|+| .|+|.|.|.+ |+..
T Consensus         5 ~v~~G~~~~L~C~~~g~P~---p~i~W~k~g~~l~~~~-~~~~~~~~~~~~~l~i~~~~~~D~G-~Y~C~a~N~~-G~~~   78 (85)
T cd05857           5 AVPAANTVKFRCPAAGNPT---PTMRWLKNGKEFKQEH-RIGGYKVRNQHWSLIMESVVPSDKG-NYTCVVENEY-GSIN   78 (85)
T ss_pred             EcCCCCEEEEEEEcCCCCC---CEEEEEECCEECCCCC-ceeeeEEeCCceEEEEccCCcccCE-EEEEEEEeCC-CEEE
Confidence            5778999999999988764   6799999997775421 1123333 24678999999999997 9999999998 6643


Q ss_pred             e
Q psy5694         109 A  109 (129)
Q Consensus       109 ~  109 (129)
                      .
T Consensus        79 ~   79 (85)
T cd05857          79 H   79 (85)
T ss_pred             E
Confidence            3

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.48  E-value=1.8e-13  Score=88.88  Aligned_cols=73  Identities=18%  Similarity=0.338  Sum_probs=55.9

Q ss_pred             EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc-CccEEEeccCCCCCCcceEEEeecccCCeEEecccceE
Q psy5694          37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS-SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTR  115 (129)
Q Consensus        37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp-sG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~  115 (129)
                      |.|.|.+.+.|.   |.++|++++..+.+. ....|+.+.+ +|.|.|.+++.+|+| .|.|.|.|.. |+.  +. .+.
T Consensus         1 a~l~C~~~G~P~---P~v~W~k~~~~~~~~-~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~A~N~~-G~~--~~-~~~   71 (75)
T cd05763           1 ARLECAATGHPT---PQIAWQKDGGTDFPA-ARERRMHVMPEDDVFFIVDVKIEDTG-VYSCTAQNTA-GSI--SA-NAT   71 (75)
T ss_pred             CEeEeecccccC---CEEEEEeCCCccCCc-ccccceEEecCCCEEEEeeCCcccCE-EEEEEEEcCC-CEE--Ee-eEE
Confidence            689999998874   679999998433221 2356787765 578999999999997 9999999998 764  33 457


Q ss_pred             EEE
Q psy5694         116 LSI  118 (129)
Q Consensus       116 L~V  118 (129)
                      |.|
T Consensus        72 l~V   74 (75)
T cd05763          72 LTV   74 (75)
T ss_pred             EEE
Confidence            765

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.48  E-value=2.8e-13  Score=87.48  Aligned_cols=65  Identities=28%  Similarity=0.447  Sum_probs=54.7

Q ss_pred             CCeEEEEeeCCCCCCCceeEeEEeec-ceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeE
Q psy5694          34 GNTAVLRCQIPSYMSEYIIVTSWIQD-DVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGES  107 (129)
Q Consensus        34 GntAvL~C~vp~~~~~~v~v~sW~~d-~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~  107 (129)
                      |.++.|.|.+.+.|+   +.+.|+++ +..+.    ...|+.+.++|.|.|.+++.+|.| .|.|+|.|.+ |..
T Consensus         1 G~~~~l~C~~~g~P~---p~v~W~~~~~~~~~----~~~~~~~~~~~~L~i~~~~~~D~G-~Y~C~a~N~~-G~~   66 (74)
T cd05764           1 GQRATLRCKARGDPE---PAIHWISPDGKLIS----NSSRTLVYDNGTLDILITTVKDTG-SFTCIASNAA-GEA   66 (74)
T ss_pred             CCeEEEEEEccCcCC---CEEEEEeCCCEEec----CCCeEEEecCCEEEEEECChhhCE-EEEEEEECCC-CeE
Confidence            789999999987764   67999974 45553    346888889999999999999997 9999999998 663

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.48  E-value=1.5e-13  Score=92.88  Aligned_cols=69  Identities=25%  Similarity=0.382  Sum_probs=56.9

Q ss_pred             eEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccC-c---cEEEeccCCCCCCcceEEEeecccC
Q psy5694          29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS-G---DLYVFNATPNDGYKSYRCRTVNKIT  104 (129)
Q Consensus        29 ~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlps-G---~L~I~nv~~~D~g~~Y~C~a~N~lt  104 (129)
                      +.+.+|+++.|.|.+.+.|.   |.++|++++..|.+    ++||.+... |   .|.|.+++.+|+| .|+|.|.|.+ 
T Consensus        11 v~v~~G~~v~L~C~v~G~P~---p~v~W~k~g~~l~~----~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~~-   81 (92)
T cd05737          11 VTIMEGKTLNLTCTVFGDPD---PEVSWLKNDQALAL----SDHYNVKVEQGKYASLTIKGVSSEDSG-KYGIVVKNKY-   81 (92)
T ss_pred             EEEeCCCcEEEEEEEEecCC---CeEEEEECCEECcc----CCCEEEEEcCCCEEEEEEccCChhhCE-EEEEEEEECC-
Confidence            38899999999999988774   67999999987743    456666432 3   6999999999997 9999999998 


Q ss_pred             Ce
Q psy5694         105 GE  106 (129)
Q Consensus       105 ge  106 (129)
                      |+
T Consensus        82 G~   83 (92)
T cd05737          82 GG   83 (92)
T ss_pred             Cc
Confidence            55

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.48  E-value=1.8e-13  Score=89.90  Aligned_cols=75  Identities=16%  Similarity=0.294  Sum_probs=56.9

Q ss_pred             CCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEecccc
Q psy5694          34 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQ  113 (129)
Q Consensus        34 GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~  113 (129)
                      |..+.|.|.+.+.|+   |.++|++++.+|...  ...+.....++.|.|.+++.+|+| .|+|.|.|.+ |+...+.  
T Consensus         1 g~~~~l~C~a~G~P~---P~i~W~k~g~~i~~~--~~~~~~~~~~~~l~i~~v~~~D~G-~Y~C~A~N~~-G~~~~~~--   71 (76)
T cd05868           1 GEDGTLICRANGNPK---PSISWLTNGVPIEIA--PTDPSRKVDGDTIIFSKVQERSSA-VYQCNASNEY-GYLLANA--   71 (76)
T ss_pred             CCCEEEEEEeeEeCC---CeEEEEECCEEcccc--CCCceEEecCCEEEECCCCHhhCE-EEEEEEEcCC-CEEEEEE--
Confidence            788999999998874   679999999887532  112222334568999999999997 9999999999 7754443  


Q ss_pred             eEEEE
Q psy5694         114 TRLSI  118 (129)
Q Consensus       114 ~~L~V  118 (129)
                       .|.|
T Consensus        72 -~l~v   75 (76)
T cd05868          72 -FVNV   75 (76)
T ss_pred             -EEEe
Confidence             5554

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.48  E-value=3.2e-13  Score=90.85  Aligned_cols=81  Identities=23%  Similarity=0.423  Sum_probs=60.7

Q ss_pred             CeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEE---c-cCccEEEeccCCCCCCcceEEEeecccCCeEEec
Q psy5694          35 NTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV---L-SSGDLYVFNATPNDGYKSYRCRTVNKITGESQAS  110 (129)
Q Consensus        35 ntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~v---l-psG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S  110 (129)
                      +++.|.|.+.+.|... ..+.|.+|+..|... ..+++|..   . ..|.|.|.|++.+|.| .|+|.|.|.. |+... 
T Consensus         1 ~~~~L~C~a~g~P~p~-~~v~W~~~g~~i~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~YtC~A~n~~-g~~~~-   75 (85)
T cd05854           1 ENLTLQCHASHDPTMD-LTFTWSLDDFPIDLD-KPNGHYRRMEVKETIGDLVIVNAQLSHAG-TYTCTAQTVV-DSASA-   75 (85)
T ss_pred             CcEEEEEEEecCCCCC-eEEEEEECCeEcccc-CCCCcEEEEEecceEeEEEEccCChhhCe-EEEEEEecCC-CCEEE-
Confidence            3689999998887542 247999999877432 12455533   2 3689999999999997 9999999999 66433 


Q ss_pred             ccceEEEEecCC
Q psy5694         111 VFQTRLSITGKL  122 (129)
Q Consensus       111 ~~~~~L~V~ep~  122 (129)
                        .++|.|..|+
T Consensus        76 --~~~L~V~~~P   85 (85)
T cd05854          76 --SATLVVRGPP   85 (85)
T ss_pred             --EEEEEEECCC
Confidence              5599998763

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.48  E-value=2.5e-13  Score=87.66  Aligned_cols=75  Identities=24%  Similarity=0.340  Sum_probs=57.7

Q ss_pred             CCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEecccc
Q psy5694          34 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQ  113 (129)
Q Consensus        34 GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~  113 (129)
                      |+.+.|.|.+.+.|.   |.++|.+++..|...  .........+|.|.|.+++.+|+| .|+|.|.|.. |+...+   
T Consensus         1 G~~~~l~C~~~g~P~---p~i~W~~~g~~~~~~--~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~A~N~~-G~~~~~---   70 (76)
T cd04978           1 GETGRLDCEAEGIPQ---PTITWRLNGVPIEEL--PPDPRRRVDGGTLILSNVQPNDTA-VYQCNASNVH-GYLLAN---   70 (76)
T ss_pred             CCeEEEEEEceeeCC---CEEEEEECCEECCCC--CCcceEEccCCEEEECCCChhhCE-EEEEEEEccC-CeEEEe---
Confidence            789999999988774   679999999777542  111244567899999999999997 9999999997 774433   


Q ss_pred             eEEEE
Q psy5694         114 TRLSI  118 (129)
Q Consensus       114 ~~L~V  118 (129)
                      +.|.|
T Consensus        71 ~~l~V   75 (76)
T cd04978          71 AFVHV   75 (76)
T ss_pred             EEEEE
Confidence            35554

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.47  E-value=3.2e-13  Score=92.44  Aligned_cols=85  Identities=21%  Similarity=0.319  Sum_probs=61.8

Q ss_pred             eeEeeeeeeEEEe---CCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccC-CCCCCcceE
Q psy5694          21 YEINVNYEHNVIL---GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNAT-PNDGYKSYR   96 (129)
Q Consensus        21 y~~~v~~~~~V~~---GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~-~~D~g~~Y~   96 (129)
                      |..++.+. .+-+   |+.+.|.|.+.+.|.   +.++|.+++..|..   .++||. +.+|.|.|.++. .+|+| .|+
T Consensus         4 f~~~P~~~-~~~~~~~~~~v~l~C~a~G~P~---P~i~W~k~~~~i~~---~~~~~~-~~~g~L~I~~~~~~~D~G-~Y~   74 (93)
T cd05849           4 FEEQPIDT-IYPEESTEGKVSVNCRARANPF---PIYKWRKNNLDIDL---TNDRYS-MVGGNLVINNPDKYKDAG-RYV   74 (93)
T ss_pred             EEECCCCE-EecCCccCCeEEEeCcCccCCC---CEEEEEECCEEccC---CCCeEE-EECCEEEECcCCcCCCCE-EEE
Confidence            34445544 3333   558999999988874   67999999977742   245774 568999999986 68997 999


Q ss_pred             EEeecccCCeEEecccceEEE
Q psy5694          97 CRTVNKITGESQASVFQTRLS  117 (129)
Q Consensus        97 C~a~N~ltge~k~S~~~~~L~  117 (129)
                      |.|.|.+ |+. .|. .++|+
T Consensus        75 C~A~N~~-G~~-~s~-~a~l~   92 (93)
T cd05849          75 CIVSNIY-GKV-RSR-EATLS   92 (93)
T ss_pred             EEEEeCc-ceE-EEc-cEEEe
Confidence            9999999 663 233 55654

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.47  E-value=1.9e-13  Score=91.96  Aligned_cols=77  Identities=18%  Similarity=0.293  Sum_probs=60.3

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc-cCCCceEEEcc---CccEEEeccCCCCCCcceEEEee
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-TDTGGKYVVLS---SGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~-~~~~~ry~vlp---sG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      +.+. .+.+|++|.|.|.+.+.|.   +.+.|++++..+... ...++|+.+.+   .+.|.|.+|+.+|+| .|.|.|.
T Consensus         8 ~~~~-~~~~g~~v~l~C~~~g~p~---p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~   82 (96)
T cd05732           8 LENQ-TAVELEQITLTCEAEGDPI---PEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAG-RYDCEAS   82 (96)
T ss_pred             cCce-eEecCCcEEEEEEEeEcCC---CcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCE-EeEEEEE
Confidence            4556 8899999999999988763   579999988655322 11346777754   357999999999997 9999999


Q ss_pred             cccCCeE
Q psy5694         101 NKITGES  107 (129)
Q Consensus       101 N~ltge~  107 (129)
                      |.+ |+.
T Consensus        83 N~~-G~~   88 (96)
T cd05732          83 NRI-GGD   88 (96)
T ss_pred             eCC-CCc
Confidence            999 553

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.47  E-value=2e-13  Score=92.79  Aligned_cols=75  Identities=19%  Similarity=0.357  Sum_probs=58.5

Q ss_pred             eEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEee-cceeeecccCCCceEEEccCc----cEEEeccCCCCCCcceE
Q psy5694          22 EINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQ-DDVNIYLNTDTGGKYVVLSSG----DLYVFNATPNDGYKSYR   96 (129)
Q Consensus        22 ~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~-d~~~i~~~~~~~~ry~vlpsG----~L~I~nv~~~D~g~~Y~   96 (129)
                      .+.+++. .+..|++|.|.|.+.+.|+    .++|.+ ++..+.+    .+++.+..+|    .|.|.+++.+|.| .|+
T Consensus         4 ~v~p~~~-~v~~G~~~~l~C~~~G~p~----~i~W~~~~~~~~~~----~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~   73 (92)
T cd04977           4 DIVPSQG-EISVGESKFFLCQVIGEPK----DISWFSPNGEKLVT----QQQISVVQNDDVRSTLTIYNANIEDAG-IYK   73 (92)
T ss_pred             EEecCcE-EECCCCeEEEEEEeEeeCC----eEEEECCCCCEecc----CCCEEEEeCCCCEEEEEEecCCcccCE-EEE
Confidence            4567777 8999999999999987752    589997 5555532    2455555444    7999999999998 999


Q ss_pred             EEeecccCCe
Q psy5694          97 CRTVNKITGE  106 (129)
Q Consensus        97 C~a~N~ltge  106 (129)
                      |.|.|.+++.
T Consensus        74 C~A~N~~g~~   83 (92)
T cd04977          74 CVATDAKGTE   83 (92)
T ss_pred             EEEEcCCCCc
Confidence            9999998554

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.47  E-value=2.2e-13  Score=95.06  Aligned_cols=79  Identities=16%  Similarity=0.175  Sum_probs=61.3

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc--------CccEEEeccCCCCCCcceEEEeec
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS--------SGDLYVFNATPNDGYKSYRCRTVN  101 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp--------sG~L~I~nv~~~D~g~~Y~C~a~N  101 (129)
                      .|.+|..+.|.|.+.++++  .+.+.|+||+.+|..    +.++.+..        .+.|.|.+|..+|+| .|+|+|.|
T Consensus        14 ~v~~G~~v~L~c~v~g~~P--~p~v~W~Kdg~~i~~----~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G-~Ytc~A~N   86 (101)
T cd04975          14 FVNLGENLNLVVEVEAYPP--PPHINWTYDNRTLTN----KLTEIVTSENESEYRYVSELKLVRLKESEAG-TYTFLASN   86 (101)
T ss_pred             EEECCCCEEEEEEEEecCC--CCccEEEeCCeeCCC----CcceeEEEeccCcceEEEEEEEeecCHhhCe-eEEEEEEC
Confidence            7889999999999998433  367999999988842    34444443        267999999999998 99999999


Q ss_pred             ccCCeEEecccceEEEEe
Q psy5694         102 KITGESQASVFQTRLSIT  119 (129)
Q Consensus       102 ~ltge~k~S~~~~~L~V~  119 (129)
                      .+ |+...   ...|.|+
T Consensus        87 ~~-G~~~~---t~~L~V~  100 (101)
T cd04975          87 SD-ASKSL---TFELYVN  100 (101)
T ss_pred             CC-ccEEE---EEEEEEE
Confidence            99 66322   4577764

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.46  E-value=2.8e-13  Score=89.12  Aligned_cols=73  Identities=30%  Similarity=0.422  Sum_probs=56.1

Q ss_pred             EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc-CccEEEeccCCCCCCcceEEEeecccCCeEEecccceE
Q psy5694          37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS-SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTR  115 (129)
Q Consensus        37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp-sG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~  115 (129)
                      +.|.|.+.+.|.   |.++|++++..|.+   ..+++.+.. .|.|.|.+++.+|+| .|+|.|.|.+ |+...+. ...
T Consensus         1 v~L~C~~~g~P~---p~v~W~k~g~~l~~---~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~N~~-G~~~s~~-~~~   71 (77)
T cd05760           1 VTLRCHIDGHPR---PTYQWFRDGTPLSD---GQGNYSVSSKERTLTLRSAGPDDSG-LYYCCAHNAF-GSVCSSQ-NFT   71 (77)
T ss_pred             CEEEEEeeecCC---CcEEEEECCEECCC---CCccEEEeCCCCEEEEeeCCcccCE-EEEEEEEeCC-CeEeeCc-eEE
Confidence            579999988874   67999999977743   235666653 568999999999997 9999999999 7755554 344


Q ss_pred             EEE
Q psy5694         116 LSI  118 (129)
Q Consensus       116 L~V  118 (129)
                      |.|
T Consensus        72 l~v   74 (77)
T cd05760          72 LSI   74 (77)
T ss_pred             EEE
Confidence            444

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.46  E-value=4.3e-13  Score=91.63  Aligned_cols=78  Identities=19%  Similarity=0.355  Sum_probs=58.7

Q ss_pred             eeEeeeeeeEEE---eCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccC-CCCCCcceE
Q psy5694          21 YEINVNYEHNVI---LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNAT-PNDGYKSYR   96 (129)
Q Consensus        21 y~~~v~~~~~V~---~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~-~~D~g~~Y~   96 (129)
                      |...+.+. .+.   .|+++.|.|.+.+.|+   +.++|++|+..|...  .+.+|. ..+|.|.|.++. .+|+| .|+
T Consensus         4 f~~~p~~~-~~~~~~~g~~v~l~C~~~G~P~---P~i~W~k~g~~l~~~--~~~~~~-~~~g~L~i~~~~~~~D~G-~Y~   75 (94)
T cd05848           4 FVQEPDDA-IFPTDSDEKKVILNCEARGNPV---PTYRWLRNGTEIDTE--SDYRYS-LIDGNLIISNPSEVKDSG-RYQ   75 (94)
T ss_pred             eEECCCcE-EccCCCCCCEEEEEEEeeecCC---CEEEEEECCeECccC--CCceEE-eeCCeEEEccCCccCcCE-EEE
Confidence            33445554 333   4799999999988874   679999999777432  234554 468999999985 69997 999


Q ss_pred             EEeecccCCeE
Q psy5694          97 CRTVNKITGES  107 (129)
Q Consensus        97 C~a~N~ltge~  107 (129)
                      |.|.|.+ |+.
T Consensus        76 C~A~N~~-G~~   85 (94)
T cd05848          76 CLATNSI-GSI   85 (94)
T ss_pred             EEEEcCC-CeE
Confidence            9999999 763

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.46  E-value=5.5e-13  Score=90.99  Aligned_cols=85  Identities=21%  Similarity=0.389  Sum_probs=61.9

Q ss_pred             eeEeeeeeeEEEeC---CeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccC-CCCCCcceE
Q psy5694          21 YEINVNYEHNVILG---NTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNAT-PNDGYKSYR   96 (129)
Q Consensus        21 y~~~v~~~~~V~~G---ntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~-~~D~g~~Y~   96 (129)
                      |..++++. .+.+|   ++|.|.|.+.+.|.   +.++|.+|+..|...  .+.+|.+ .+|.|.|.++. .+|+| .|+
T Consensus         4 f~~~P~~~-~~~~~~~g~~v~l~C~a~g~P~---p~i~W~~~g~~l~~~--~~~~~~~-~~g~L~I~~~~~~~D~G-~Y~   75 (94)
T cd05850           4 FEEQPSSL-LFPEGSPEEKVTLGCRARASPP---ATYRWKMNGTEIKFA--PESRYTL-VAGNLVINNPQKARDAG-SYQ   75 (94)
T ss_pred             eEECCCCE-EecCCCCCCeEEEEeEceeCCC---CEEEEEECCEECccC--CCceEEE-ECCeEEEccCCccCcCE-EEE
Confidence            55566666 44445   68999999988774   579999999777431  3456654 58999999976 58997 999


Q ss_pred             EEeecccCCeEEecccceEE
Q psy5694          97 CRTVNKITGESQASVFQTRL  116 (129)
Q Consensus        97 C~a~N~ltge~k~S~~~~~L  116 (129)
                      |.|.|.+ |+. .|. .+.|
T Consensus        76 C~A~N~~-G~~-~s~-~a~l   92 (94)
T cd05850          76 CLAINRC-GTV-VSR-EANL   92 (94)
T ss_pred             EEEEcCc-CcE-EEE-EEEE
Confidence            9999999 663 333 4444

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.45  E-value=2.7e-13  Score=92.85  Aligned_cols=69  Identities=29%  Similarity=0.487  Sum_probs=56.8

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      +|++. .|..|++|.|.|.+.+ +   .+.++|.+|+.+|.+.   .+||.+ .+|.|.|.|++.+|+| .|+|.|.+.
T Consensus         2 ~P~~~-~v~~G~~v~L~C~~~~-~---~~~i~W~~ng~~i~~~---~~r~~~-~~~~L~I~nv~~~DsG-~Y~C~a~e~   70 (87)
T cd05873           2 DPRQR-TFKLGNNAELKCSPKS-N---LARVVWKFDGKVLTPE---SAKYLL-YRDGLLIFNASEADAG-RYQCLSVEK   70 (87)
T ss_pred             CcceE-EEECCCCEEEEEECCC-C---CCeEEEEECCEECCCC---CceEEE-ECCcEEEeCCCHHHCE-EEEEEEEec
Confidence            45666 8999999999999753 3   3578999999888542   367765 5788999999999998 999999987

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.45  E-value=3.2e-13  Score=87.77  Aligned_cols=74  Identities=20%  Similarity=0.373  Sum_probs=59.3

Q ss_pred             EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCcc-EEEeccCCCCCCcceEEEeecccCCeEEecccceE
Q psy5694          37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD-LYVFNATPNDGYKSYRCRTVNKITGESQASVFQTR  115 (129)
Q Consensus        37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~-L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~  115 (129)
                      |.|.|.+.+.|+   +.+.|++++..|.+.  ...++.+.++|. |.|.+++.+|.| .|+|.|.|.+ |...  . .+.
T Consensus         1 ~~L~C~v~g~P~---p~v~W~k~~~~l~~~--~~~~~~~~~~~~~l~I~~~~~~D~G-~Y~C~a~N~~-G~~~--~-~~~   70 (76)
T cd05736           1 ASLRCHAEGIPL---PRLTWLKNGMDITPK--LSKQLTLIANGSELHISNVRYEDTG-AYTCIAKNEA-GVDE--D-ISS   70 (76)
T ss_pred             CEeEeEeeecCC---CEEEEEECCEECCCC--CCccEEEeCCCCEEEECcCCcccCE-EEEEEEEcCC-CCcc--e-EEE
Confidence            679999998774   578999999777542  346888888775 999999999997 9999999998 6533  2 558


Q ss_pred             EEEec
Q psy5694         116 LSITG  120 (129)
Q Consensus       116 L~V~e  120 (129)
                      |.|++
T Consensus        71 l~V~~   75 (76)
T cd05736          71 LFVED   75 (76)
T ss_pred             EEEEc
Confidence            88864

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.45  E-value=4.9e-13  Score=87.05  Aligned_cols=72  Identities=28%  Similarity=0.445  Sum_probs=54.6

Q ss_pred             CCeEEEEeeCCCCCCCceeEeEEeecc---e-eeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEe
Q psy5694          34 GNTAVLRCQIPSYMSEYIIVTSWIQDD---V-NIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQA  109 (129)
Q Consensus        34 GntAvL~C~vp~~~~~~v~v~sW~~d~---~-~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~  109 (129)
                      |+++.|.|.+.+.|.   +.++|+++.   . .+.......+++.+...|.|.|.+++.+|+| .|.|.|.|.. |+.+.
T Consensus         1 G~~v~l~C~~~g~P~---p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~N~~-G~~~~   75 (81)
T cd05765           1 GETASFHCDVTGRPP---PEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAG-LYTCTARNSG-GLLRA   75 (81)
T ss_pred             CCcEEEEeeccccCC---CcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCE-EEEEEEecCC-ceEEE
Confidence            789999999988774   579999973   1 1211112235677778899999999999997 9999999998 77444


Q ss_pred             c
Q psy5694         110 S  110 (129)
Q Consensus       110 S  110 (129)
                      +
T Consensus        76 ~   76 (81)
T cd05765          76 N   76 (81)
T ss_pred             E
Confidence            3

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.44  E-value=3.4e-13  Score=88.53  Aligned_cols=71  Identities=20%  Similarity=0.327  Sum_probs=55.6

Q ss_pred             EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc----cEEEeccCCCCCCcceEEEeecccCCeEEeccc
Q psy5694          37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG----DLYVFNATPNDGYKSYRCRTVNKITGESQASVF  112 (129)
Q Consensus        37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG----~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~  112 (129)
                      +.|+|.+.+.|+   |.+.|.+|+..|..   ...||.+..++    .|.|.+++.+|+| .|+|.|.|.+ |+.  ++ 
T Consensus         1 v~L~C~v~G~P~---P~v~W~k~~~~i~~---~~~r~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~N~~-G~~--~~-   69 (75)
T cd05744           1 VRLECRVSAIPP---PQIFWKKNNEMLTY---NTDRISLYQDNCGRICLLIQNANKEDAG-WYTVSAVNEA-GVV--SC-   69 (75)
T ss_pred             CEEEEEEeecCC---CeEEEEECCEECCC---CCCcEEEEEcCCCeEEEEECCCCcccCE-EEEEEEEcCC-CcE--EE-
Confidence            469999998885   67999999987743   24678776543    4999999999997 9999999999 663  33 


Q ss_pred             ceEEEE
Q psy5694         113 QTRLSI  118 (129)
Q Consensus       113 ~~~L~V  118 (129)
                      .++|.|
T Consensus        70 ~~~l~v   75 (75)
T cd05744          70 NARLDV   75 (75)
T ss_pred             EEEEeC
Confidence            456654

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.44  E-value=5.4e-13  Score=91.12  Aligned_cols=73  Identities=25%  Similarity=0.393  Sum_probs=58.2

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccC-------ccEEEeccCCCCCCcceEEEeecc
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS-------GDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlps-------G~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      .+.+|++|.|.|.+.+.|.+  ..+.|.+++..|.+.  .++||.+..+       +.|.|.+++.+|..|.|.|.|.|.
T Consensus        12 ~~~~G~~v~L~C~~~g~P~P--~~v~W~~~~~~i~~~--~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~   87 (98)
T cd05758          12 YAILGDKGRVECFIFSTPPP--DRIVWTWKENELESG--SSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNS   87 (98)
T ss_pred             EEeCCCcEEEEEEEcccCCC--CEeEEEECCEEccCC--CCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcC
Confidence            78999999999999987742  258999999877542  3468988754       379999999977434999999999


Q ss_pred             cCCeE
Q psy5694         103 ITGES  107 (129)
Q Consensus       103 ltge~  107 (129)
                      + |+.
T Consensus        88 ~-G~~   91 (98)
T cd05758          88 F-GSG   91 (98)
T ss_pred             C-Ccc
Confidence            9 663

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.43  E-value=4.1e-13  Score=90.29  Aligned_cols=77  Identities=21%  Similarity=0.292  Sum_probs=57.2

Q ss_pred             eeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCC
Q psy5694          26 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITG  105 (129)
Q Consensus        26 ~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltg  105 (129)
                      ++. .+..|++|.|.|.+.+.|   .+.++|++|+..+... .....-.....+.|.|.+++.+|.| .|+|.|.|.+ |
T Consensus         8 ~~~-~v~~G~~v~l~C~~~G~P---~p~v~W~~~g~~~~~~-~~~~~~~~~~~~~L~I~~v~~~D~g-~Y~C~A~N~~-G   80 (90)
T cd04972           8 NAT-VVYEGGTATIRCTAEGSP---LPKVEWIIAGLIVIQT-RTDTLETTVDIYNLQLSNITSETQT-TVTCTAENPV-G   80 (90)
T ss_pred             cCE-EEcCCCcEEEEEEEEEcC---CCeEEEEECCEEccCC-ccEEEEecCCEEEEEEecCCcccCE-EEEEEEECCC-C
Confidence            344 688999999999999887   4789999999666321 0001111235678999999999976 9999999999 6


Q ss_pred             eEEe
Q psy5694         106 ESQA  109 (129)
Q Consensus       106 e~k~  109 (129)
                      +...
T Consensus        81 ~~~~   84 (90)
T cd04972          81 QANV   84 (90)
T ss_pred             ceeE
Confidence            6433

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.43  E-value=6.3e-13  Score=89.76  Aligned_cols=76  Identities=24%  Similarity=0.309  Sum_probs=54.3

Q ss_pred             CCeEEEEeeCCCCCCCceeEeEEeecc----eeeecccCCCceEEEc----------cCccEEEeccCCCCCCcceEEEe
Q psy5694          34 GNTAVLRCQIPSYMSEYIIVTSWIQDD----VNIYLNTDTGGKYVVL----------SSGDLYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        34 GntAvL~C~vp~~~~~~v~v~sW~~d~----~~i~~~~~~~~ry~vl----------psG~L~I~nv~~~D~g~~Y~C~a   99 (129)
                      |++|.|+|.+.+.|   .|.++|+|++    ..+.+.  ......++          ..+.|.|.||+.+|+| .|+|.|
T Consensus         1 G~~v~l~C~v~g~P---~P~i~W~k~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~A   74 (90)
T cd04974           1 GSDVEFHCKVYSDA---QPHIQWLKHVEVNGSKYGPD--GLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAG-EYTCLA   74 (90)
T ss_pred             CCcEEEEEEEeCCC---CCeEEEEEecccCCceeCCC--CCceEEEEEecCCcccccccceEEEeccccccCc-EEEEEe
Confidence            78999999999887   4679999963    223211  11111222          2357999999999998 999999


Q ss_pred             ecccCCeEEecccceEEEEe
Q psy5694         100 VNKITGESQASVFQTRLSIT  119 (129)
Q Consensus       100 ~N~ltge~k~S~~~~~L~V~  119 (129)
                      .|.+ |+.  +. .|.|.|.
T Consensus        75 ~N~~-G~~--~~-sa~L~V~   90 (90)
T cd04974          75 GNSI-GPS--HH-SAWLTVL   90 (90)
T ss_pred             eccc-Ccc--cC-CEEEEeC
Confidence            9999 663  33 5688774

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.43  E-value=8.5e-13  Score=87.15  Aligned_cols=80  Identities=21%  Similarity=0.378  Sum_probs=64.5

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEc---cCccEEEeccCCCCCCcceE
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL---SSGDLYVFNATPNDGYKSYR   96 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl---psG~L~I~nv~~~D~g~~Y~   96 (129)
                      .|...+.+. .+.+|+++.|.|.+.+.|.   +.++|.+++..|..    +.+|.+.   .+..|.|.+++.+|+| .|+
T Consensus         2 ~~~~~~~~~-~v~~G~~~~l~c~~~~~p~---~~v~W~~~~~~l~~----~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~   72 (90)
T PF07679_consen    2 VFTKKPKDV-TVKEGESVTLECEVSGNPP---PTVTWYKNGRPLTS----SQRYQIESDGGSSSLTIKNVTREDAG-TYT   72 (90)
T ss_dssp             EEEEESSEE-EEETTSEEEEEEEEEESSS---SEEEEEETTEEEES----SSSEEEEEETTEEEEEESSESGGGSE-EEE
T ss_pred             EEEEecCCE-EEeCCCEEEEEEEEEeCCC---Ccccccccccceee----eeeeeeecccceeEEccCCCChhhCE-EEE
Confidence            355566666 9999999999999987753   57899999988854    4667665   4667999999999997 999


Q ss_pred             EEeecccCCeEEe
Q psy5694          97 CRTVNKITGESQA  109 (129)
Q Consensus        97 C~a~N~ltge~k~  109 (129)
                      |.|.|.. |+...
T Consensus        73 C~~~n~~-g~~~~   84 (90)
T PF07679_consen   73 CVASNSS-GEATA   84 (90)
T ss_dssp             EEEEETT-EEEEE
T ss_pred             EEEEECC-CEEEE
Confidence            9999995 66433

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.42  E-value=6.2e-13  Score=87.81  Aligned_cols=69  Identities=20%  Similarity=0.371  Sum_probs=56.4

Q ss_pred             eeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCC
Q psy5694          26 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITG  105 (129)
Q Consensus        26 ~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltg  105 (129)
                      ++. .+.+|.++.|.|.+.+.+    +.+.|.+|+..|.+    +.|+.+. ++.|.|.+++.+|.| .|+|.|.|.+ |
T Consensus         2 ~~~-~~~~G~~v~l~C~~~~~~----~~v~W~k~g~~l~~----~~~~~~~-~~~L~I~~~~~~DsG-~Y~C~a~n~~-g   69 (79)
T cd04973           2 ESY-SAHPGDLLQLRCRLRDDV----QSINWTKDGVQLGE----NNRTRIT-GEEVQIKDAVPRDSG-LYACVTSSPS-G   69 (79)
T ss_pred             CcE-EecCCCCEEEEEEecCCC----ceEEEeeCCcCCCC----CceEEEe-CCEEEECCCChhhCE-EEEEEEeCCC-C
Confidence            344 788999999999998643    46899999987743    4677664 567999999999997 9999999987 5


Q ss_pred             e
Q psy5694         106 E  106 (129)
Q Consensus       106 e  106 (129)
                      +
T Consensus        70 ~   70 (79)
T cd04973          70 S   70 (79)
T ss_pred             c
Confidence            4

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.41  E-value=1.2e-12  Score=89.25  Aligned_cols=73  Identities=23%  Similarity=0.306  Sum_probs=56.1

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc-cCCCceEEEcc---CccEEEeccCCCCCCcceEEEeecccCC
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-TDTGGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITG  105 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~-~~~~~ry~vlp---sG~L~I~nv~~~D~g~~Y~C~a~N~ltg  105 (129)
                      .+..|+.+.|.|.+.+.|.   |.++|.+++..|... ....+|+.+..   .+.|.|.+++.+|+| .|.|.|.|.+ |
T Consensus        13 ~~~~g~~v~l~C~~~G~P~---P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G-~Y~C~A~N~~-G   87 (97)
T cd05869          13 AMELEEQITLTCEASGDPI---PSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAG-EYLCTASNTI-G   87 (97)
T ss_pred             EEEcCCCEEEEEEeeEeCC---CEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCE-EEEEEEecCC-C
Confidence            3444899999999988774   679999988666432 11246776643   368999999999997 9999999999 5


Q ss_pred             eE
Q psy5694         106 ES  107 (129)
Q Consensus       106 e~  107 (129)
                      ..
T Consensus        88 ~~   89 (97)
T cd05869          88 QD   89 (97)
T ss_pred             Ce
Confidence            53

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.41  E-value=5.3e-13  Score=87.59  Aligned_cols=65  Identities=22%  Similarity=0.384  Sum_probs=51.4

Q ss_pred             EEEEeeCCCCCCCceeEeEEeecceeeecc----cCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCe
Q psy5694          37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLN----TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGE  106 (129)
Q Consensus        37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~----~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge  106 (129)
                      |.|.|.+.++|.   |.+.|.+++....+.    ...++|+.+.++|.|.|.+++.+|+| .|+|.|.|.+ |.
T Consensus         1 v~l~C~~~G~P~---P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~~-G~   69 (79)
T cd05734           1 VTLNCSAEGYPP---PTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSG-YYLCKVSNDV-GA   69 (79)
T ss_pred             CEeEeeCeEeCC---CEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCE-EEEEEEEeCC-CC
Confidence            579999998874   679999975221111    12467898889999999999999997 9999999998 54

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.40  E-value=7.6e-13  Score=85.63  Aligned_cols=70  Identities=17%  Similarity=0.225  Sum_probs=53.5

Q ss_pred             EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEecccceEE
Q psy5694          37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRL  116 (129)
Q Consensus        37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L  116 (129)
                      ++|.|.+.+.|+   |.++|++++..+.+    +.......+|.|.|.+++.+|.| .|+|.|.|.+ |+.+.   ...|
T Consensus         1 ~~L~C~~~G~P~---P~v~W~k~~~~~~~----~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~~-G~~~~---~~~l   68 (71)
T cd05876           1 LVLECIAEGLPT---PEVHWDRIDGPLSP----NRTKKLNNNKTLQLDNVLESDDG-EYVCTAENSE-GSARH---HYTV   68 (71)
T ss_pred             CEEEEEeeEecC---CeEEEEECCcCCCC----CceeEEcCCCEEEEcccCHHhCE-EEEEEEEcCC-CeEEE---EEEE
Confidence            479999998884   67999999866532    12333457899999999999997 9999999999 66433   3356


Q ss_pred             EE
Q psy5694         117 SI  118 (129)
Q Consensus       117 ~V  118 (129)
                      .|
T Consensus        69 ~V   70 (71)
T cd05876          69 TV   70 (71)
T ss_pred             EE
Confidence            55

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>KOG3513|consensus

Probab=99.40  E-value=9.4e-13  Score=121.45  Aligned_cols=86  Identities=21%  Similarity=0.400  Sum_probs=73.0

Q ss_pred             eeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCC
Q psy5694          26 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITG  105 (129)
Q Consensus        26 ~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltg  105 (129)
                      +..+.|..|.+|+|.|.+.++|   .++++|.+++..+.    .++||.++++|.|.|.|++.+|+| .|.|.|.|++ |
T Consensus       433 ~~~~~a~~g~~v~i~C~~~asP---~p~~~W~k~~~~~~----~~~r~~i~edGtL~I~n~t~~DaG-~YtC~A~N~~-G  503 (1051)
T KOG3513|consen  433 ERKVMAVVGGTVTIDCKPFASP---KPKVSWLKGGEKLL----QSGRIRILEDGTLEISNVTRSDAG-KYTCVAENKL-G  503 (1051)
T ss_pred             ceEEEEEeCCeEEEeeccCCCC---cceEEEEcCCcccc----cCceEEECCCCcEEecccCcccCc-EEEEEEEccc-C
Confidence            3334799999999999999888   47899999986332    579999999999999999999998 9999999999 6


Q ss_pred             eEEecccceEEEEecCCC
Q psy5694         106 ESQASVFQTRLSITGKLK  123 (129)
Q Consensus       106 e~k~S~~~~~L~V~ep~~  123 (129)
                      ..  .+ .|.|+|+++..
T Consensus       504 ~a--~~-~~~L~Vkd~tr  518 (1051)
T KOG3513|consen  504 KA--ES-TGNLIVKDATR  518 (1051)
T ss_pred             cc--ce-EEEEEEecCce
Confidence            63  44 67999998754

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.39  E-value=2e-12  Score=88.87  Aligned_cols=74  Identities=15%  Similarity=0.204  Sum_probs=57.8

Q ss_pred             EEEeCCeEEEEeeCCCCCCC--ceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeE
Q psy5694          30 NVILGNTAVLRCQIPSYMSE--YIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGES  107 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~--~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~  107 (129)
                      .+..|.++.|.|.......+  ..+.+.|.||+.+|..    +.+. +..+|.|.|.+|+.+|+| .|.|.|.|...+..
T Consensus         6 ~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~----~~~~-~~~~~~L~I~~v~~~DsG-~YtC~~~n~~~~~~   79 (92)
T cd05757           6 ILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEG----DRKR-FVKGSKLLIQNVTEEDAG-NYTCKLTFTHNGKQ   79 (92)
T ss_pred             EEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCC----CccE-EecCCEEEEeeCChhhCE-EEEEEEEecCCCEE
Confidence            67899999999998654422  3467999999988742    2333 338899999999999997 99999999986664


Q ss_pred             Ee
Q psy5694         108 QA  109 (129)
Q Consensus       108 k~  109 (129)
                      ..
T Consensus        80 ~~   81 (92)
T cd05757          80 YN   81 (92)
T ss_pred             EE
Confidence            33

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.39  E-value=2.8e-12  Score=85.88  Aligned_cols=81  Identities=19%  Similarity=0.360  Sum_probs=58.9

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEe
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQA  109 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~  109 (129)
                      .+..|++|.|+|.+.+ +   .+.+.|++++..+.+......|+.+.+ +.|.|.+++.+|.| .|+|.|.|...++.  
T Consensus         7 ~v~~g~~v~L~C~~~~-p---~~~i~W~k~~~~~~~~~~~~~~~~~~~-~~L~I~~~~~~D~G-~Y~C~a~~~~~~~~--   78 (89)
T cd04979           7 TVVEGNSVFLECSPKS-N---LASVVWLFQGGPLQRKEEPEERLLVTE-DGLLIRSVSPADAG-VYTCQSVEHGFKQT--   78 (89)
T ss_pred             EEECCCcEEEEEeCCC-C---CceEEEEECCcccccccCcCceEEEcC-CCEEEccCCHHHCE-EEEEEEecCcccee--
Confidence            7899999999999865 3   256899999866543211135777765 55999999999997 99999998754443  


Q ss_pred             cccceEEEEe
Q psy5694         110 SVFQTRLSIT  119 (129)
Q Consensus       110 S~~~~~L~V~  119 (129)
                      +. ...|.|-
T Consensus        79 ~~-~~~l~V~   87 (89)
T cd04979          79 LA-TYSLNVL   87 (89)
T ss_pred             Ee-EEEEEEe
Confidence            33 3355554

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.38  E-value=2.3e-12  Score=88.53  Aligned_cols=75  Identities=17%  Similarity=0.243  Sum_probs=56.4

Q ss_pred             eeeEEEeCCeEEEEeeCCCC----CCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          27 YEHNVILGNTAVLRCQIPSY----MSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        27 ~~~~V~~GntAvL~C~vp~~----~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      +. .+.+|+++.|+|.+.+.    .+  .+.+.|+|++..+......+.|+.. .+|.|.|.+++.+|+| .|.|.+.|.
T Consensus         8 ~~-~v~~G~~~~L~C~~~g~~~~~~p--~~~v~Wyk~~~~~~~~~~~~~r~~~-~~~~L~I~~~~~~DsG-~Y~C~~~N~   82 (94)
T cd05756           8 KS-YVLEGEPVVIKCPLFYSYIAQSP--GLNLTWYKSDGKTPIPTEERSRMHQ-QKDLLWFLPAALEDSG-LYTCVVRNS   82 (94)
T ss_pred             EE-EEecCCCeEEECCCCCcccccCC--CceEEEEEcCCCCcccccccceeee-cCCeEEEccCCcccCe-EEEEEEcCC
Confidence            44 78899999999999873    22  3469999998543211123456644 4689999999999998 999999998


Q ss_pred             cCCeE
Q psy5694         103 ITGES  107 (129)
Q Consensus       103 ltge~  107 (129)
                      . |..
T Consensus        83 ~-g~~   86 (94)
T cd05756          83 T-YCM   86 (94)
T ss_pred             C-ccE
Confidence            7 663

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.36  E-value=2.1e-12  Score=86.97  Aligned_cols=75  Identities=25%  Similarity=0.325  Sum_probs=52.9

Q ss_pred             CCeEEEEeeCCCCCCCceeEeEEeecc----eeeecccCCCceEEEccC----------ccEEEeccCCCCCCcceEEEe
Q psy5694          34 GNTAVLRCQIPSYMSEYIIVTSWIQDD----VNIYLNTDTGGKYVVLSS----------GDLYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        34 GntAvL~C~vp~~~~~~v~v~sW~~d~----~~i~~~~~~~~ry~vlps----------G~L~I~nv~~~D~g~~Y~C~a   99 (129)
                      |++|.|.|.+.+.|.   |.++|++++    ..+.+.  ...+..++..          +.|.|++|+.+|+| .|+|.|
T Consensus         1 G~~v~L~C~~~g~P~---P~i~W~k~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~A   74 (90)
T cd05858           1 GSTVEFVCKVYSDAQ---PHIQWLKHVEKNGSKYGPD--GLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAG-EYTCLA   74 (90)
T ss_pred             CCeEEEEEEEecCCC---CEEEEEEecccCCcEeCCC--CCeeEEEeccCCceecCCceeEEEEccCCHHHCE-EEEEEE
Confidence            789999999988874   679999853    233221  1112223221          46999999999997 999999


Q ss_pred             ecccCCeEEecccceEEEE
Q psy5694         100 VNKITGESQASVFQTRLSI  118 (129)
Q Consensus       100 ~N~ltge~k~S~~~~~L~V  118 (129)
                      .|.+ |+...   .+.|.|
T Consensus        75 ~N~~-G~~~~---~a~L~V   89 (90)
T cd05858          75 GNSI-GISHH---SAWLTV   89 (90)
T ss_pred             EeCC-Ccccc---eEEEEE
Confidence            9999 65322   457776

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.35  E-value=1.7e-12  Score=84.36  Aligned_cols=60  Identities=18%  Similarity=0.181  Sum_probs=49.7

Q ss_pred             EEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCe
Q psy5694          38 VLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGE  106 (129)
Q Consensus        38 vL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge  106 (129)
                      .|.|.+.+.|+   +.+.|++|+..|.+    +.++ ....+.|.|.|++.+|+| .|+|.|.|.+++.
T Consensus         2 ~l~c~v~g~P~---p~v~W~k~g~~l~~----~~~~-~~~~~~L~I~~v~~~D~G-~YtC~a~N~~g~~   61 (71)
T cd04976           2 RLPVKVKAYPP---PEIQWYKNGKLISE----KNRT-KKSGHSLTIKDVTEEDAG-NYTVVLTNKQAKL   61 (71)
T ss_pred             EEEeEEEEeCC---CEEEEEECCEECCC----CCEE-EcCCCEEEECcCCHHHCE-EEEEEEEcCCccE
Confidence            68999998885   56899999988743    2455 456789999999999997 9999999999544

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>KOG4221|consensus

Probab=99.35  E-value=2.5e-12  Score=119.60  Aligned_cols=89  Identities=21%  Similarity=0.483  Sum_probs=79.5

Q ss_pred             eeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEE
Q psy5694          19 QKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCR   98 (129)
Q Consensus        19 q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~   98 (129)
                      -+|..++++. ++..|++|.|+|.+-+   +.++.+.|+||+.+|.    .++|++++|||.|+|.++++.|.| .|||.
T Consensus       141 ~~f~~~~~~~-t~~~g~ta~f~c~vn~---e~~p~i~w~kn~~pl~----~~~r~i~lpsG~L~I~~~qp~d~g-~yrc~  211 (1381)
T KOG4221|consen  141 ADFALQPEST-TLLYGQTALFSCEVNA---EPVPTIMWLKNDQPLP----LDSRVIVLPSGALEISGLQPSDTG-EYRCV  211 (1381)
T ss_pred             CccccCccce-eEecCCcEEEEEEEcC---ccCceeEEeccccccc----CCCcEEEcCCCcEEecccccCCCc-eEEEE
Confidence            5799999999 9999999999999986   4467899999998773    467999999999999999999998 99999


Q ss_pred             eecccCCeEEecccceEEEEe
Q psy5694          99 TVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        99 a~N~ltge~k~S~~~~~L~V~  119 (129)
                      +.+.  +..+.|+ .|+|+|.
T Consensus       212 vt~g--~~~r~S~-~a~ltv~  229 (1381)
T KOG4221|consen  212 VTGG--ASQRTSN-EAELTVL  229 (1381)
T ss_pred             EecC--CcCCccc-eeEEEec
Confidence            9997  5667777 8899998

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.35  E-value=3.6e-12  Score=88.01  Aligned_cols=77  Identities=16%  Similarity=0.260  Sum_probs=57.1

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeeccee-eecc---cCCCceEEEcc----CccEEEeccCCCCCCcceE
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVN-IYLN---TDTGGKYVVLS----SGDLYVFNATPNDGYKSYR   96 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~-i~~~---~~~~~ry~vlp----sG~L~I~nv~~~D~g~~Y~   96 (129)
                      ..+. .|..|++|.|+|.+.+.+   .+.+.|.+++.. |...   ...+.||.+..    ++.|.|+||+.+|+| .|.
T Consensus         4 ~~~~-tv~~G~tv~L~C~v~g~~---~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G-~Yt   78 (95)
T cd05882           4 TQDE-TVAVGGTVTLKCGVKEHD---NSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEG-EYT   78 (95)
T ss_pred             cccE-EEecCCcEEEEEEEeCCC---CCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCE-EEE
Confidence            3455 899999999999998866   367999998733 2211   01357887652    468999999999998 999


Q ss_pred             EEeecccCCe
Q psy5694          97 CRTVNKITGE  106 (129)
Q Consensus        97 C~a~N~ltge  106 (129)
                      |.+.....++
T Consensus        79 C~~~t~~~~~   88 (95)
T cd05882          79 CSIFTMPVRT   88 (95)
T ss_pred             EEEEeecccc
Confidence            9999744333

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.35  E-value=3.5e-12  Score=86.67  Aligned_cols=71  Identities=24%  Similarity=0.368  Sum_probs=56.1

Q ss_pred             eEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEc-cCc---cEEEeccCCCCCCcceEEEeecccC
Q psy5694          29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL-SSG---DLYVFNATPNDGYKSYRCRTVNKIT  104 (129)
Q Consensus        29 ~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl-psG---~L~I~nv~~~D~g~~Y~C~a~N~lt  104 (129)
                      +.+.+|++|.|.|.+.+.|.   +.+.|++++..+.    .+++|.+. .+|   .|.|.+++.+|+| .|.|.|.|.+ 
T Consensus        11 v~v~eG~~v~L~C~v~g~P~---p~i~W~k~~~~~~----~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~N~~-   81 (92)
T cd05891          11 VTIMEGKTLNLTCTVFGNPD---PEVIWFKNDQDIE----LSEHYSVKLEQGKYASLTIKGVTSEDSG-KYSINVKNKY-   81 (92)
T ss_pred             EEEcCCCEEEEEEEEEEeCC---CeEEEEECCEECC----CCCCEEEEEcCCCEEEEEECCCChhhCE-EEEEEEEeCC-
Confidence            38899999999999877763   5689999987663    23556542 333   7999999999997 9999999999 


Q ss_pred             CeEE
Q psy5694         105 GESQ  108 (129)
Q Consensus       105 ge~k  108 (129)
                      |+.+
T Consensus        82 G~~~   85 (92)
T cd05891          82 GGET   85 (92)
T ss_pred             Ccee
Confidence            5533

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.34  E-value=5.6e-12  Score=81.83  Aligned_cols=65  Identities=17%  Similarity=0.314  Sum_probs=50.6

Q ss_pred             CCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEec
Q psy5694          34 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQAS  110 (129)
Q Consensus        34 GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S  110 (129)
                      |+++.|.|.+.+.|.   |.++|++++..|.+    +.++.+ ..+.|.|.|++  |.| .|+|.|.|.+ |+...+
T Consensus         1 G~~v~L~C~a~G~P~---P~v~W~k~g~~l~~----~~~~~~-~~~~L~i~~~~--d~G-~Y~C~A~N~~-G~~~~~   65 (69)
T cd05739           1 GGSVNLTCVAVGAPM---PYVKWMKGGEELTK----EDEMPV-GRNVLELTNIY--ESA-NYTCVAISSL-GMIEAT   65 (69)
T ss_pred             CCeEEEEEEeeecCC---CEEEEEECCEECCC----ccceec-CccEEEEeccc--cCe-eEEEEEEeCC-CEEEEE
Confidence            789999999998884   67999999977743    244433 45679999985  776 9999999999 775444

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.33  E-value=1.7e-12  Score=84.96  Aligned_cols=69  Identities=16%  Similarity=0.212  Sum_probs=52.1

Q ss_pred             EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEecccceEE
Q psy5694          37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRL  116 (129)
Q Consensus        37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L  116 (129)
                      +.|.|.+.++|+   |.++|++|+..|..    +.+  +..++.|.|.+++.+|.| .|+|.|.|.+ |+...+. ...|
T Consensus         1 ~~~~c~v~G~P~---P~v~W~k~g~~l~~----~~~--~~~~~~L~I~~v~~~D~G-~YtC~a~N~~-G~~~~~~-t~~l   68 (70)
T cd05864           1 VKIPVKYYGYPP---PEVKWYKNGQLIVL----NHT--FKRGVHLTIYEVTEKDAG-NYTVVLTNPI-TKEEQRH-TFQL   68 (70)
T ss_pred             CEEEeEEEEeCC---CEEEEEECCEECCC----CCE--EccCCEEEECcCCHHHCE-EEEEEEEECC-CceeeEE-EEEE
Confidence            468999998885   67899999988743    233  344568999999999997 9999999999 5433433 3344


Q ss_pred             E
Q psy5694         117 S  117 (129)
Q Consensus       117 ~  117 (129)
                      +
T Consensus        69 ~   69 (70)
T cd05864          69 V   69 (70)
T ss_pred             E
Confidence            4

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.33  E-value=3.2e-12  Score=85.98  Aligned_cols=71  Identities=17%  Similarity=0.147  Sum_probs=55.9

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCcee-EeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEe
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYII-VTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~-v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a   99 (129)
                      |...+++. .|..|++|.|.|.+.+.|.   | .+.|.+|+..|..      ++.. ..+.|.|.++.  |+| .|+|.|
T Consensus         1 f~~~P~~~-~v~~G~~v~l~C~a~G~P~---P~~I~W~k~g~~l~~------~~~~-~~s~L~i~~~~--d~g-~Y~C~A   66 (81)
T cd05749           1 FTVEPEDL-SVTANTPFNLTCQAVGPPE---PVEILWWQGGSPLGD------PPAP-SPSVLNVPGLN--ETS-KFSCEA   66 (81)
T ss_pred             CcCCCCce-EEcCCCCEEEEEEeeeecC---CeEEEEEECCEECCC------CCCC-CCCEEEEcccc--CCe-EEEEEE
Confidence            44567777 9999999999999988874   6 5999999977732      2222 34689999984  776 999999


Q ss_pred             ecccCCe
Q psy5694         100 VNKITGE  106 (129)
Q Consensus       100 ~N~ltge  106 (129)
                      .|.+ |+
T Consensus        67 ~N~~-G~   72 (81)
T cd05749          67 HNAK-GV   72 (81)
T ss_pred             Eecc-Cc
Confidence            9999 65

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.33  E-value=6.2e-12  Score=82.63  Aligned_cols=63  Identities=19%  Similarity=0.370  Sum_probs=50.1

Q ss_pred             EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEE-ccCccEEEeccCC----CCCCcceEEEeecccCCe
Q psy5694          37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV-LSSGDLYVFNATP----NDGYKSYRCRTVNKITGE  106 (129)
Q Consensus        37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~v-lpsG~L~I~nv~~----~D~g~~Y~C~a~N~ltge  106 (129)
                      +.|.|.+.+.|+   +.++|++|+..|.+.  .+.++.+ .++|.|.|.+++.    +|+| .|+|.|.|.+ |+
T Consensus         1 i~l~C~~~G~P~---P~v~W~k~g~~l~~~--~~~~~~~~~~~g~L~i~~~~~~~~~~d~G-~Y~C~A~N~~-G~   68 (77)
T cd05733           1 IVIKCEAKGNPP---PTFSWTRNGTHFDPE--KDPRVTMKPDSGTLVIDNMNGGRAEDYEG-EYQCYASNEL-GT   68 (77)
T ss_pred             CEEEeeCcccCC---CeEEEEECCeECCCC--CCCCEEEeCCCCEEEEeccCCCCCcCCCE-EEEEEEEcCC-Cc
Confidence            479999988874   679999999777442  3456665 4689999999965    6886 9999999999 65

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.32  E-value=7e-12  Score=87.30  Aligned_cols=78  Identities=17%  Similarity=0.176  Sum_probs=60.1

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc---------CccEEEeccCCCCCCcceEEEee
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS---------SGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp---------sG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      .+..|..+.|.|.+-++|+   |.++|+||+.+|..+    .+..+..         .+.|.|.+++.+|.| .|.|.|.
T Consensus        14 ~~~~~~~~~l~~~v~g~P~---P~v~W~kdg~~l~~~----~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G-~Ytc~A~   85 (101)
T cd05859          14 FANLHEVKEFVVEVEAYPP---PQIRWLKDNRTLIEN----LTEITTSEHNVQETRYVSKLKLIRAKEEDSG-LYTALAQ   85 (101)
T ss_pred             EEecCCcEEEEEEEEEeCC---CceEEEECCEECcCC----cceEEeccccccceeeccEEEEeeCCHHHCE-EEEEEEE
Confidence            7889999999999999985   579999999888532    2222211         367999999999998 9999999


Q ss_pred             cccCCeEEecccceEEEEe
Q psy5694         101 NKITGESQASVFQTRLSIT  119 (129)
Q Consensus       101 N~ltge~k~S~~~~~L~V~  119 (129)
                      |.. |+...   ...|.|+
T Consensus        86 N~~-g~~~~---t~~l~V~  100 (101)
T cd05859          86 NED-AVKSY---TFALQIQ  100 (101)
T ss_pred             cCC-ceEEE---EEEEEEE
Confidence            998 66433   3466654

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.32  E-value=9.4e-12  Score=80.41  Aligned_cols=63  Identities=22%  Similarity=0.300  Sum_probs=51.5

Q ss_pred             eEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc---CccEEEeccCCCCCCcceEEEeecccCCeE
Q psy5694          36 TAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGES  107 (129)
Q Consensus        36 tAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp---sG~L~I~nv~~~D~g~~Y~C~a~N~ltge~  107 (129)
                      ++.|.|.+.+.|+   |.+.|++|+..|.    .++|+.+..   .+.|.|.+++.+|.| .|.|.|.|.+ |+.
T Consensus         1 ~~~l~c~~~G~P~---p~v~W~k~g~~l~----~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~N~~-G~~   66 (74)
T cd05748           1 SVRLEVPISGRPT---PTVTWSKDGKPLK----LSGRVQIETTASSTSLVIKNAERSDSG-KYTLTLKNPA-GEK   66 (74)
T ss_pred             CEEEEeeEeeeCC---CeEEEEECCEEcC----CCCeEEEEECCCeEEEEECCCCcCcCE-EEEEEEECCC-ccE
Confidence            3679999998884   6799999997773    346777653   457999999999998 9999999998 653

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.31  E-value=1.1e-11  Score=86.87  Aligned_cols=79  Identities=23%  Similarity=0.342  Sum_probs=60.8

Q ss_pred             eCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEc--c-----CccEEEeccC-CCCCCcceEEEeecccC
Q psy5694          33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL--S-----SGDLYVFNAT-PNDGYKSYRCRTVNKIT  104 (129)
Q Consensus        33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl--p-----sG~L~I~nv~-~~D~g~~Y~C~a~N~lt  104 (129)
                      .|.+|.|.|.+.+.|+   +.++|.+|+..|.+   .+.||.+.  .     .+.|.|.+++ .+|.| .|+|.|.|.+ 
T Consensus        22 ~g~~v~L~C~a~G~P~---p~i~W~k~g~~l~~---~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G-~Y~C~A~N~~-   93 (109)
T cd05773          22 GSSDANLVCQAQGVPR---VQFRWAKNGVPLDL---GNPRYEETTEHTGTVHTSILTIINVSAALDYA-LFTCTAHNSL-   93 (109)
T ss_pred             CCCEEEEEEECcccCC---CEEEEEECCEECCC---CCCeEEEEeeccCccceeEEEECcCCccCCCE-EEEEEEEeCC-
Confidence            4789999999987764   57999999977743   24577542  2     3579999998 58997 9999999999 


Q ss_pred             CeEEecccceEEEEecCC
Q psy5694         105 GESQASVFQTRLSITGKL  122 (129)
Q Consensus       105 ge~k~S~~~~~L~V~ep~  122 (129)
                      |+.  +. ...|.|.+++
T Consensus        94 G~~--~~-~i~L~~~~~p  108 (109)
T cd05773          94 GED--SL-DIQLVSTSRP  108 (109)
T ss_pred             ccC--cE-EEEEEecCCC
Confidence            774  33 5588888764

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.30  E-value=1.6e-11  Score=84.36  Aligned_cols=85  Identities=14%  Similarity=0.269  Sum_probs=60.1

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-eeeecc---cCCCceEEEc----cCccEEEeccCCCCCCcce
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLN---TDTGGKYVVL----SSGDLYVFNATPNDGYKSY   95 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-~~i~~~---~~~~~ry~vl----psG~L~I~nv~~~D~g~~Y   95 (129)
                      ..++. .|.+|++|.|+|.+.+.+   .+.+.|.+.+ ..|...   ...++||.+.    .++.|.|.|++.+|+| .|
T Consensus         3 ~~~~v-~v~eG~~v~L~C~~~~~p---~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG-~Y   77 (95)
T cd07701           3 LTQNV-TVVEGGTANLTCRVDQND---NTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEG-QY   77 (95)
T ss_pred             ccceE-EEecCCcEEEEEEEecCC---ceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCE-EE
Confidence            45566 899999999999998766   3568998643 333211   1135788764    3467999999999997 99


Q ss_pred             EEEeecccCCeEEecccceEEEE
Q psy5694          96 RCRTVNKITGESQASVFQTRLSI  118 (129)
Q Consensus        96 ~C~a~N~ltge~k~S~~~~~L~V  118 (129)
                      .|.+.+. .+.   +. .|.|+|
T Consensus        78 ~C~~~t~-~~~---~~-~~~l~v   95 (95)
T cd07701          78 TCSLFTM-PVK---TS-KAYLTV   95 (95)
T ss_pred             EEEeEee-cCc---cE-EEEEEC
Confidence            9999984 233   33 456664

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.29  E-value=1.3e-11  Score=83.00  Aligned_cols=68  Identities=21%  Similarity=0.371  Sum_probs=53.3

Q ss_pred             EeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCC-CCCCcceEEEeecccCCeE
Q psy5694          32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATP-NDGYKSYRCRTVNKITGES  107 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~-~D~g~~Y~C~a~N~ltge~  107 (129)
                      ..|++|.|.|.+.+.|   .+.++|++++..|...  .+.+|. +.+|.|.|.++.. +|+| .|+|+|.|.+ |+.
T Consensus        17 ~~~~~~~l~C~~~g~p---~p~i~W~k~~~~l~~~--~~~~~~-~~~~~L~i~~~~~~~d~G-~Y~C~a~N~~-G~~   85 (91)
T cd04967          17 SDEGKVSLNCRARGSP---PPTYRWLMNGTEIDDE--PDSRYS-LVGGNLVISNPSKAKDAG-RYQCLASNIV-GTV   85 (91)
T ss_pred             CCCCEEEEEEeeeEcC---CCEEEEEECCEECCCC--CCCCEE-EECCEEEEecCCccCCCE-EEEEEEEcCC-CEE
Confidence            4567899999997665   3689999999777321  245664 4689999999985 8997 9999999999 663

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.29  E-value=1.5e-11  Score=81.29  Aligned_cols=64  Identities=14%  Similarity=0.266  Sum_probs=50.1

Q ss_pred             EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEE-ccCccEEEeccCC---C-CCCcceEEEeecccCCeE
Q psy5694          37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV-LSSGDLYVFNATP---N-DGYKSYRCRTVNKITGES  107 (129)
Q Consensus        37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~v-lpsG~L~I~nv~~---~-D~g~~Y~C~a~N~ltge~  107 (129)
                      ++|.|.+.+.|+   |.++|++|+..|..  ..+.|+.+ ..+|.|.|.+++.   + |+| .|+|.|.|.+ |+.
T Consensus         1 ~~l~C~~~G~P~---P~v~W~k~g~~~~~--~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G-~Y~C~A~N~~-G~~   69 (77)
T cd05875           1 IIIECEAKGNPV---PTFQWTRNGKFFNV--AKDPRVSMRRRSGTLVIDFSGGGRPEDYEG-EYQCFARNNL-GTA   69 (77)
T ss_pred             CEEEEeccccCC---CEEEEEECCEEccC--cCCCcEEEeCCCceEEEeccCCCCCCCCCE-EEEEEEEecc-ceE
Confidence            479999999884   78999999976532  24567776 4789999999853   4 576 9999999999 663

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.29  E-value=7.8e-12  Score=79.44  Aligned_cols=69  Identities=19%  Similarity=0.325  Sum_probs=51.2

Q ss_pred             EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEE-ccCccEEEeccCCCCCCcceEEEeecccCCeEEecccceE
Q psy5694          37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV-LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTR  115 (129)
Q Consensus        37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~v-lpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~  115 (129)
                      +.|.|.+.+.|+   |.++|.+++..+..     ++... ..++.|.|.+++.+|+| .|+|.|.|.. |....   ...
T Consensus         1 v~l~C~~~g~P~---p~v~W~k~~~~~~~-----~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~a~N~~-G~~~~---~~~   67 (71)
T cd05731           1 LLLECIAEGLPT---PEISWIKIGGELPA-----DRTKFENFNKTLKIDNVSEEDDG-EYRCTASNSL-GSARH---TIS   67 (71)
T ss_pred             CEEEEEeeEecC---CeEEEEECCeECCC-----CceeEecCCCEEEECCCCHHHCE-EEEEEEEeCC-ceEEE---EEE
Confidence            469999988874   57999999866532     23322 34678999999999997 9999999998 65332   335


Q ss_pred             EEE
Q psy5694         116 LSI  118 (129)
Q Consensus       116 L~V  118 (129)
                      |.|
T Consensus        68 l~V   70 (71)
T cd05731          68 VTV   70 (71)
T ss_pred             EEE
Confidence            555

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.29  E-value=2.7e-11  Score=82.77  Aligned_cols=83  Identities=14%  Similarity=0.185  Sum_probs=58.5

Q ss_pred             eEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--eeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCe
Q psy5694          29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGE  106 (129)
Q Consensus        29 ~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge  106 (129)
                      +++.+|++|.|.|.. ..|   .+.++|.+++  ..+......++|+... ++.|.|++++.+|+| .|+|.|.|...|+
T Consensus         6 ~~~~eG~~v~L~C~~-~~p---~p~v~Wykq~~g~~~~~~~~~~~r~~~~-~~~L~I~~~~~~DsG-~Y~C~a~~~~~~~   79 (91)
T cd05871           6 VYGVENNSTFLECLP-KSP---QASVKWLFQRGGDQRKEEVKTEERLIHT-ERGLLLRSLQRSDAG-VYTCTAVEHSFSQ   79 (91)
T ss_pred             EEEecCCcEEEEEEC-CCC---CceEEEEEECCCCCccccccccccEEEe-cCeEEEeeCChhHCE-EEEEEEEccCCeE
Confidence            478999999999995 444   3568999854  2211111134678664 567999999999997 9999999655466


Q ss_pred             EEecccceEEEEec
Q psy5694         107 SQASVFQTRLSITG  120 (129)
Q Consensus       107 ~k~S~~~~~L~V~e  120 (129)
                      ...   .+.|+|-+
T Consensus        80 ~~~---~~~l~v~~   90 (91)
T cd05871          80 TLA---KYTLHVIE   90 (91)
T ss_pred             EEE---EEEEEEec
Confidence            544   45777754

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.27  E-value=9.7e-12  Score=80.57  Aligned_cols=69  Identities=20%  Similarity=0.309  Sum_probs=52.8

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCe
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGE  106 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge  106 (129)
                      .+-.|+++.|.|.+.+.|.   +.++|++++..+.+.   .........+.|.|.+++.+|.| .|.|.|.|.. |+
T Consensus         5 ~~~~G~~v~L~C~~~g~p~---p~i~W~k~~~~~~~~---~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~a~N~~-G~   73 (82)
T cd05856           5 ARPVGSSVRLKCVASGNPR---PDITWLKDNKPLTPT---EIGESRKKKWTLSLKNLKPEDSG-KYTCHVSNRA-GE   73 (82)
T ss_pred             eccCCCeEEEEEEeeEeCC---CcEEEEECCcCCcCC---ccceecCceEEEEEccCChhhCE-EEEEEEEcCC-cc
Confidence            4567999999999987764   468999998666332   11222234578999999999997 9999999998 65

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.27  E-value=6.7e-12  Score=82.98  Aligned_cols=64  Identities=16%  Similarity=0.143  Sum_probs=52.6

Q ss_pred             EEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEe
Q psy5694          38 VLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQA  109 (129)
Q Consensus        38 vL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~  109 (129)
                      .|.|.+.++|+   |.++|.||+.+|..   ...+|.+ .++.|.|.||+.+|+| .|+|.|.|...|+.+.
T Consensus         2 ~l~c~v~g~P~---P~v~W~kdg~~l~~---~~~~~~~-~~~~L~I~~v~~~D~G-~YtC~a~~~~~~~~~~   65 (72)
T cd07702           2 RLTPKVKAFPA---PEVIWLKDGLPAAE---KCSRYHV-DGYSLVIKDVTEEDAG-IYTILLGIKQYNLFKN   65 (72)
T ss_pred             eEEeeEEEcCC---CeEEEEECCEECCC---CCcEEEe-CCCEEEECcCCHHHCE-EEEEEEEccccceEee
Confidence            58999998885   56899999987743   2357765 4568999999999997 9999999998888654

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.26  E-value=7.3e-12  Score=81.68  Aligned_cols=56  Identities=21%  Similarity=0.223  Sum_probs=46.4

Q ss_pred             EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCC
Q psy5694          37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITG  105 (129)
Q Consensus        37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltg  105 (129)
                      +.|.|.+.++|+   |.++|+||+..|..      +.   ..+.|.|.++..+|+| .|.|.|.|.+++
T Consensus         1 ~~l~c~v~g~P~---P~v~W~kdg~~l~~------~~---~~~~L~i~~v~~~D~G-~YtC~a~N~~g~   56 (67)
T cd05863           1 VKLPVKVAAYPP---PEFQWYKDGKLISG------KH---SQHSLQIKDVTEASAG-TYTLVLWNSAAG   56 (67)
T ss_pred             CEEEEEEEEeCC---CEEEEEECCEECcc------cC---CcCEEEECCCCHHHCE-EEEEEEEECCcc
Confidence            368999999885   67999999988742      11   3579999999999997 999999999943

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.26  E-value=2.4e-11  Score=80.96  Aligned_cols=74  Identities=19%  Similarity=0.337  Sum_probs=57.4

Q ss_pred             EeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          23 INVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        23 ~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      ..|+.. .+.+|.+++|.|.+.+.+..  ..+.|++|+..|..           .++.|.|.++ .+|.| .|+|.|.|.
T Consensus         5 ~~P~~~-~v~~G~~V~L~C~~~~~p~~--~~~~W~kng~~l~~-----------~~~~l~i~~~-~~dsG-~Y~C~a~~~   68 (78)
T cd05752           5 LDPPWT-TIFQGEKVTLTCNGFNSPEQ--NSTQWYHNGKLLET-----------TTNSYRIRAA-NNDSG-EYRCQTQGS   68 (78)
T ss_pred             eCCCCe-EeeCCCCEEEEEeCCCCCCC--ccEEEEECCEEeec-----------cCCeEEEeec-ccCCE-EeEEECCCC
Confidence            456666 88999999999999887542  34799999976621           3578999999 99997 999999985


Q ss_pred             cCCeEEecccceEEEE
Q psy5694         103 ITGESQASVFQTRLSI  118 (129)
Q Consensus       103 ltge~k~S~~~~~L~V  118 (129)
                           ..|. +.+|.|
T Consensus        69 -----~~S~-~v~l~V   78 (78)
T cd05752          69 -----SLSD-PVHLEV   78 (78)
T ss_pred             -----cCCC-CEEEeC
Confidence                 3355 667764

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.26  E-value=2.1e-11  Score=79.29  Aligned_cols=69  Identities=23%  Similarity=0.413  Sum_probs=50.1

Q ss_pred             EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEc---cCccEEEeccCCCCCCcceEEEeecccCCeEEe
Q psy5694          37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL---SSGDLYVFNATPNDGYKSYRCRTVNKITGESQA  109 (129)
Q Consensus        37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl---psG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~  109 (129)
                      ++|+|.+.+..+  .+.+.|++++..|......+.|+.+.   ..+.|.|.+++.+|.| .|.|+|.|.+ |+...
T Consensus         1 ~~L~C~a~~~~p--~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG-~Y~C~a~N~~-g~~~~   72 (76)
T cd05895           1 LVLRCETVSEYP--SLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNG-EYKCMVSSKL-GNDSV   72 (76)
T ss_pred             CEEEEecccCCC--CCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCE-EEEEEEEeCC-CceeE
Confidence            479999875433  35689999997774322234455543   2467999999999997 9999999998 66433

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.23  E-value=4.9e-11  Score=78.78  Aligned_cols=65  Identities=18%  Similarity=0.309  Sum_probs=50.2

Q ss_pred             EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc-CccEEEeccCCC----CCCcceEEEeecccCCeEE
Q psy5694          37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS-SGDLYVFNATPN----DGYKSYRCRTVNKITGESQ  108 (129)
Q Consensus        37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp-sG~L~I~nv~~~----D~g~~Y~C~a~N~ltge~k  108 (129)
                      +.|.|.+-+.|   .|.++|++|+..|..  ..+.++.+.+ +|.|.|..++.+    |+| .|+|.|.|.+ |+..
T Consensus         1 ~~l~C~a~G~P---~P~i~W~k~g~~l~~--~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G-~Y~C~A~N~~-G~~~   70 (77)
T cd05874           1 IVIQCEAKGKP---PPSFSWTRNGTHFDI--DKDPKVTMKPNTGTLVINIMNGEKAEAYEG-VYQCTARNER-GAAV   70 (77)
T ss_pred             CEEEeeCcccC---CCeEEEEECCeECCC--cCCCCEEEeCCCceEEEeccccCCCCCCCE-EEEEEEEcCC-CeEE
Confidence            36999998887   478999999977633  2345666654 899999999864    676 9999999998 7743

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.23  E-value=2.3e-11  Score=81.52  Aligned_cols=60  Identities=13%  Similarity=0.131  Sum_probs=47.2

Q ss_pred             EEeeCCCCCCCceeEeEEeecceeeecccCCCceEEE----------ccCccEEEeccCCCCCCcceEEEeecccCCeE
Q psy5694          39 LRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV----------LSSGDLYVFNATPNDGYKSYRCRTVNKITGES  107 (129)
Q Consensus        39 L~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~v----------lpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~  107 (129)
                      |.|.+.+.|+   |.++|+||+..|.+.    .++.+          ..+|.|.|.+++.+|.| .|+|+|.|.+ |+.
T Consensus         3 i~~~v~G~P~---P~v~W~k~g~~i~~~----~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~YtC~A~N~~-G~~   72 (81)
T cd04971           3 IPFTVRGNPK---PTLTWYHNGAVLNES----DYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNG-NYTLVASNEY-GQD   72 (81)
T ss_pred             EEEEeEeeCC---CcEEEEECCEECcCC----CceeEEEEeecccccccEEEEEECCCCcccCe-EEEEEEEeCC-CCe
Confidence            6899888884   679999999888542    22211          23678999999999998 9999999999 664

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.21  E-value=4.5e-11  Score=79.25  Aligned_cols=75  Identities=17%  Similarity=0.225  Sum_probs=56.3

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      .++.. .+..|+++.|.|.+.+..+  .+.+.|.+++..+..      +. ...+|.|.|.+++.+|+| .|+|.|.|.+
T Consensus         7 ~p~~~-~v~~G~~v~L~C~~~~~~~--~~~i~W~~~~~~~~~------~~-~~~~~~L~I~~v~~~DsG-~Y~C~a~n~~   75 (85)
T cd05754           7 EPRSQ-EVRPGADVSFICRAKSKSP--AYTLVWTRVGGGLPS------RA-MDFNGILTIRNVQLSDAG-TYVCTGSNML   75 (85)
T ss_pred             CCCce-EEcCCCCEEEEEEcCCCCC--CcEEEEEECCCcCCC------cc-cccCCEEEECCCCHHHCE-EEEEEEeccC
Confidence            34445 8899999999999865322  367999998844421      21 234789999999999997 9999999998


Q ss_pred             CCeEEec
Q psy5694         104 TGESQAS  110 (129)
Q Consensus       104 tge~k~S  110 (129)
                       |+...+
T Consensus        76 -g~~~~~   81 (85)
T cd05754          76 -DTDEAT   81 (85)
T ss_pred             -CeEeEE
Confidence             775443

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.20  E-value=2.6e-11  Score=81.60  Aligned_cols=61  Identities=16%  Similarity=0.152  Sum_probs=47.8

Q ss_pred             EEeeCCCCCCCceeEeEEeecceeeecccCCCceE----EE----ccCccEEEeccCCCCCCcceEEEeecccCCeEE
Q psy5694          39 LRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKY----VV----LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQ  108 (129)
Q Consensus        39 L~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry----~v----lpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k  108 (129)
                      |+|.+.+.|+   |.++|++|+..|...    .+.    ..    .-.|.|.|.+++.+|+| .|+|+|.|.+ |+..
T Consensus         3 i~~~v~G~P~---Pti~W~kng~~l~~~----~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G-~YtC~A~N~~-G~~~   71 (79)
T cd05855           3 IPFTVKGNPK---PTLQWFHEGAILNES----EYICTKIHVINNTEYHGCLQLDNPTHLNNG-IYTLVAKNEY-GEDE   71 (79)
T ss_pred             EEEEEeEeCC---CceEEEECCEECCCC----cceeeeeEeecccceEEEEEECCCCcccCE-EEEEEEEcCC-cccc
Confidence            6899988884   789999999888432    221    11    23578999999999998 9999999999 7643

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.17  E-value=1.5e-10  Score=80.90  Aligned_cols=72  Identities=24%  Similarity=0.350  Sum_probs=54.4

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc----Cc---cEEEeccCCCCCCcceEEEeecc
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS----SG---DLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp----sG---~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      ++.+|++|.|.|.+.+.|++-  .+.|..++..|...  ..+||.|..    .|   .|.|.|+..+|-+|.|.|.|.|.
T Consensus        12 ~~~~G~~~~L~C~~~s~P~P~--~i~W~w~~~~i~~~--~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~   87 (98)
T cd05898          12 YAVRGERGKVKCFIGSTPPPD--RIAWAWKENVLESG--TSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNS   87 (98)
T ss_pred             EEeCCCcEEEEEEEccCCCCc--EEEEEEccccccCC--CCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeC
Confidence            889999999999998887753  34555555455432  357998853    23   49999999888545999999999


Q ss_pred             cCCe
Q psy5694         103 ITGE  106 (129)
Q Consensus       103 ltge  106 (129)
                      + |+
T Consensus        88 ~-G~   90 (98)
T cd05898          88 F-GS   90 (98)
T ss_pred             C-cc
Confidence            9 55

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.17  E-value=7.7e-11  Score=75.56  Aligned_cols=66  Identities=23%  Similarity=0.432  Sum_probs=48.3

Q ss_pred             EEEeeCCC-CCCCceeEeEEeecceeeecccCCCceEEE---ccCccEEEeccCCCCCCcceEEEeecccCCeEEe
Q psy5694          38 VLRCQIPS-YMSEYIIVTSWIQDDVNIYLNTDTGGKYVV---LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQA  109 (129)
Q Consensus        38 vL~C~vp~-~~~~~v~v~sW~~d~~~i~~~~~~~~ry~v---lpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~  109 (129)
                      +|.|.+.+ .|.   +.+.|++|+..|.... ....+.+   ...+.|.|.+++.+|.| .|+|.|.|.+ |+...
T Consensus         2 ~l~C~~~g~~P~---p~~~W~k~g~~l~~~~-~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~N~~-G~~~~   71 (75)
T cd05750           2 VLKCEATSEYPS---LRFKWFKDGKELNRKN-KPRNIKIRNKKKNSELQINKAKLADSG-EYTCVVENIL-GNDTV   71 (75)
T ss_pred             EEEEEccCCCCC---ceEEEEcCCeeccccC-CcceEEEEecCceEEEEEccCCcccCe-EEEEEEEEcC-CceeE
Confidence            69999998 563   6789999997774321 1111222   23578999999999997 9999999999 65433

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.16  E-value=1.9e-10  Score=69.01  Aligned_cols=62  Identities=18%  Similarity=0.297  Sum_probs=48.9

Q ss_pred             eCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      +|+++.|.|.+.+.+.   +.+.|++++..+.     ........++.|.|.+++.+|.| .|+|++.|..
T Consensus         1 ~g~~~~l~C~~~~~~~---~~v~W~~~~~~~~-----~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~n~~   62 (63)
T smart00408        1 EGQSVTLTCPAEGDPV---PNITWLKDGKPLP-----ESNRLSASGSTLTIKSVSLEDSG-EYTCVAENSA   62 (63)
T ss_pred             CCceEEEEeeCccCCC---CeEEEEECCEECC-----CCCEEecCCcEEEEeeCCcccCE-EEEEEEecCC
Confidence            4899999999766553   4689999886663     23333456789999999999997 9999999975

>KOG4221|consensus

Probab=99.14  E-value=1.7e-10  Score=107.69  Aligned_cols=96  Identities=19%  Similarity=0.330  Sum_probs=79.6

Q ss_pred             eeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEE
Q psy5694          19 QKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCR   98 (129)
Q Consensus        19 q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~   98 (129)
                      ..|-.+++.. .|..|+.++|.|.+.+.++   +.+.|++|+..|.-   .+.|+.++..|+|+|+|++..|.| .|+|+
T Consensus       238 ~~fl~~p~~~-~v~~g~~v~leCvvs~~p~---p~v~Wlrng~~i~~---ds~rivl~g~~slliS~a~~~dSg-~YtC~  309 (1381)
T KOG4221|consen  238 LVFLDEPSNA-VVVEGDDVVLECVVSGVPK---PSVKWLRNGEKISV---DSYRIVLVGGSSLLISNATDDDSG-KYTCR  309 (1381)
T ss_pred             eeeecCCCcc-ccccCCcEEEEEEecCCCC---CceEEeeCCeeeee---cceEEEEecccceEEeccccccCc-eEEEE
Confidence            4578888888 9999999999999998885   67999999977743   237888889999999999999997 99999


Q ss_pred             eecccCCeEEecccceEEEEecCCCCCC
Q psy5694          99 TVNKITGESQASVFQTRLSITGKLKSLC  126 (129)
Q Consensus        99 a~N~ltge~k~S~~~~~L~V~ep~~~~~  126 (129)
                      |.|.  .+. ..+ .+.|.|..|++..+
T Consensus       310 Atn~--~D~-ida-saev~V~a~P~~~~  333 (1381)
T KOG4221|consen  310 ATNT--NDS-IDA-SAEVTVLAPPGFTK  333 (1381)
T ss_pred             ecCC--Ccc-ccc-ceEEEEEcCCCCCC
Confidence            9994  342 233 67999999876654

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.14  E-value=2.6e-10  Score=76.40  Aligned_cols=79  Identities=22%  Similarity=0.252  Sum_probs=58.2

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      ++... .|.+|++++|+|..+...+  ...+.|.+++..+..         ...+++|.|.+++.+|+| .|+|.+.|..
T Consensus         5 ~~p~~-~V~~G~~vtL~C~~~~~~~--~~~~~w~k~g~~~~~---------~~~~~~l~I~~~~~~dsG-~Y~C~~~~~~   71 (83)
T cd05753           5 QVPSR-VVFEGEPLVLRCHGWKNKP--VYKVTYYRDGKAKKY---------SHSNSNLSIPQATLSDSG-SYHCSGIIGS   71 (83)
T ss_pred             ECCcc-eecCCCCEEEEeeCCCCCc--ceEEEEEECCeEccc---------cCCCceEEECccCHHHCE-EEEEEEEeCC
Confidence            44445 6889999999999865332  256899999865521         112578999999999997 9999999987


Q ss_pred             CCeEEecccceEEEE
Q psy5694         104 TGESQASVFQTRLSI  118 (129)
Q Consensus       104 tge~k~S~~~~~L~V  118 (129)
                       |+ +.|. +-.|+|
T Consensus        72 -~~-~~s~-~~~i~~   83 (83)
T cd05753          72 -YD-YSSE-PVSITV   83 (83)
T ss_pred             -ce-ecCC-CEEEEC
Confidence             65 5565 555553

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.13  E-value=3.2e-10  Score=73.49  Aligned_cols=69  Identities=22%  Similarity=0.312  Sum_probs=52.4

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEE----ccCccEEEeccCCCCCCcceEEEeecccCC
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV----LSSGDLYVFNATPNDGYKSYRCRTVNKITG  105 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~v----lpsG~L~I~nv~~~D~g~~Y~C~a~N~ltg  105 (129)
                      .+-.|+++.|.|.+.+++.   +.+.|.+++..+...    .++..    .....|.|.+++.+|.| .|.|.+.|.+ |
T Consensus         5 ~~~~G~~~~l~C~~~~~p~---~~v~W~k~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~g-~Y~C~~~n~~-g   75 (85)
T cd05729           5 AVPAGSTVRLKCPASGNPR---PTITWLKDGKPFKKE----HRIGGYKVRKKKWTLILESVVPSDSG-KYTCIVENKY-G   75 (85)
T ss_pred             EecCCCcEEEEEEcCCCCC---CeEEEEECCEECccc----CceeEEEccCcEEEEEEeECCcccCE-EEEEEEEECC-c
Confidence            5678999999999987763   568999998666321    12211    12357999999999997 9999999998 6


Q ss_pred             eE
Q psy5694         106 ES  107 (129)
Q Consensus       106 e~  107 (129)
                      +.
T Consensus        76 ~~   77 (85)
T cd05729          76 SI   77 (85)
T ss_pred             eE
Confidence            63

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=99.11  E-value=5.8e-10  Score=76.21  Aligned_cols=63  Identities=25%  Similarity=0.506  Sum_probs=53.8

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      .|..|+.++|+|...+..    +.+.|++++..|.    .++|+.+..+| |.|.+++.+|+| .|+|.+.-.
T Consensus         7 tv~~g~~v~L~C~~~s~~----A~v~W~~ng~~l~----~~~r~~~~~~G-LlI~~~~~~dsG-~Y~C~s~E~   69 (85)
T cd05872           7 TVAPGADVVLPCQLRSNL----ASPVWLFNGTPLN----AQFSYRVGTDG-LLILVTSPEHSG-TYRCYSEEE   69 (85)
T ss_pred             EEecCCCEEEECCCCCCC----ccEEEEECCcccC----CCcceEEeCCC-CEEEECCHhhCE-EEEEEEecC
Confidence            899999999999986544    5799999998774    35899888888 669999999998 999999844

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.09  E-value=2.5e-10  Score=75.63  Aligned_cols=79  Identities=22%  Similarity=0.268  Sum_probs=51.9

Q ss_pred             CCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEE----ccCccEEEeccCCCCCCcceEEEeecccCCeEEe
Q psy5694          34 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV----LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQA  109 (129)
Q Consensus        34 GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~v----lpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~  109 (129)
                      |+++.|.|.+.+.+. ..+.+.|.+++..+........+...    ...+.|.|.+++.+|.| .|.|.|.|.+ |+...
T Consensus         1 Ge~~~L~C~~~g~~~-~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG-~Y~C~a~n~~-~~~~~   77 (84)
T cd05742           1 GETLVLNCTVLTELN-EGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSG-TYTCAASSGT-MDQKE   77 (84)
T ss_pred             CCeEEEEEEEEeCCC-ccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCE-EEEEEEccCC-CceEE
Confidence            789999999987621 14679998876433111000111111    12468999999999997 9999999998 55333


Q ss_pred             cccceEEEE
Q psy5694         110 SVFQTRLSI  118 (129)
Q Consensus       110 S~~~~~L~V  118 (129)
                      |   +.|.|
T Consensus        78 s---~~v~v   83 (84)
T cd05742          78 S---TKVNI   83 (84)
T ss_pred             E---EEEEE
Confidence            3   35555

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>KOG3513|consensus

Probab=99.07  E-value=8.8e-10  Score=102.11  Aligned_cols=97  Identities=16%  Similarity=0.270  Sum_probs=77.7

Q ss_pred             eeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEE
Q psy5694          19 QKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCR   98 (129)
Q Consensus        19 q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~   98 (129)
                      ..|...+++. .+-.|+.++|.|++.+.|   .+.++|++++.+|.+. +.+.||.|. .|.|.|.||+.+|+| .|+|.
T Consensus       332 P~w~~~~~d~-~~~~gs~v~~eC~a~g~P---~p~v~WlkNg~pl~~~-~r~~~~~i~-~g~L~is~v~~~dsg-~YQC~  404 (1051)
T KOG3513|consen  332 PYWLQKPQDT-EADTGSNVTLECKASGKP---NPTVKWLKNGEPLEPA-ERDPRYKID-DGTLIISNVQESDSG-VYQCI  404 (1051)
T ss_pred             chhhccccee-EecCCCCeEEEEEecCCC---CCceEEeeCCeecCcc-CCCcceEEe-CCEEEEEecccccCe-EEEee
Confidence            4566677888 999999999999999777   4779999999888653 344558664 899999999999998 99999


Q ss_pred             eecccCCeEEecccceEEEEecCCCCCC
Q psy5694          99 TVNKITGESQASVFQTRLSITGKLKSLC  126 (129)
Q Consensus        99 a~N~ltge~k~S~~~~~L~V~ep~~~~~  126 (129)
                      |.|++ |-.-.   .|.|.|.......+
T Consensus       405 A~Nk~-G~i~a---nA~L~V~a~~P~f~  428 (1051)
T KOG3513|consen  405 AENKY-GTIYA---NAELKVLASAPVFP  428 (1051)
T ss_pred             eeccc-ceEee---eeEEEEEccCCCCC
Confidence            99999 66444   45888886654443

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.03  E-value=1.8e-09  Score=72.92  Aligned_cols=70  Identities=19%  Similarity=0.355  Sum_probs=51.8

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecc-eeeecc---cCCCceEEEc----cCccEEEeccCCCCCCcceEEEeec
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLN---TDTGGKYVVL----SSGDLYVFNATPNDGYKSYRCRTVN  101 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-~~i~~~---~~~~~ry~vl----psG~L~I~nv~~~D~g~~Y~C~a~N  101 (129)
                      .|.+|++|.|+|.+.+.+   .+.+.|.+-+ ..|...   ...++||.+.    .++.|.|.||+.+|+| .|.|.+.+
T Consensus         8 ~v~~G~~v~L~C~~~~~~---~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG-~Y~C~~~~   83 (95)
T cd05717           8 TVVEGGTATLKCRVKNND---NSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEG-RYTCSLYT   83 (95)
T ss_pred             EEcCCCCEEEEEEECCCC---CceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCE-EEEEEEec
Confidence            789999999999987654   3568998633 333211   0134788874    2457999999999997 99999997


Q ss_pred             cc
Q psy5694         102 KI  103 (129)
Q Consensus       102 ~l  103 (129)
                      ..
T Consensus        84 ~~   85 (95)
T cd05717          84 MP   85 (95)
T ss_pred             CC
Confidence            65

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.03  E-value=1.4e-09  Score=89.25  Aligned_cols=79  Identities=13%  Similarity=0.194  Sum_probs=60.0

Q ss_pred             EeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc-cCCCceEEEcc-----------CccEEEeccCCCC
Q psy5694          23 INVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-TDTGGKYVVLS-----------SGDLYVFNATPND   90 (129)
Q Consensus        23 ~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~-~~~~~ry~vlp-----------sG~L~I~nv~~~D   90 (129)
                      ..+++. .+..|..+.|.|.+.++|++..+.+.|.+|+..|... ...++|+.+..           +|.|.|.+|+.+|
T Consensus       225 ~~p~~~-~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D  303 (326)
T PHA02785        225 QLPEGV-VTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEED  303 (326)
T ss_pred             cCCCcE-EecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhc
Confidence            344555 7788999999999998876544679999999877432 12234554422           5789999999999


Q ss_pred             CCcceEEEeeccc
Q psy5694          91 GYKSYRCRTVNKI  103 (129)
Q Consensus        91 ~g~~Y~C~a~N~l  103 (129)
                      .| .|.|.|.|..
T Consensus       304 ~G-~Y~C~A~n~~  315 (326)
T PHA02785        304 AT-TFTCMAFTIP  315 (326)
T ss_pred             Ce-eeEEEEEecc
Confidence            96 9999999986

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.03  E-value=2.1e-09  Score=75.74  Aligned_cols=74  Identities=20%  Similarity=0.330  Sum_probs=55.9

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee--e-cc-------cCCCceEEEccCccEEEeccCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI--Y-LN-------TDTGGKYVVLSSGDLYVFNATPN   89 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i--~-~~-------~~~~~ry~vlpsG~L~I~nv~~~   89 (129)
                      +... .|.+|+.++|.|+-.  | +....++|.|..     ..|  + +.       ..-.+|..+.++|.|.|+||+.+
T Consensus         5 ~~p~-~~~~G~~V~L~v~~~--p-~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~   80 (105)
T cd05774           5 LVPP-QVAEGENVLLLVHNL--P-ENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQK   80 (105)
T ss_pred             ccCC-cccCCCCEEEEecCC--C-CCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcc
Confidence            3344 789999999999853  2 335678999963     122  1 11       01358999999999999999999


Q ss_pred             CCCcceEEEeeccc
Q psy5694          90 DGYKSYRCRTVNKI  103 (129)
Q Consensus        90 D~g~~Y~C~a~N~l  103 (129)
                      |.| .|.|.+.|.-
T Consensus        81 D~G-~Y~~~v~~~~   93 (105)
T cd05774          81 DTG-FYTLQTITTN   93 (105)
T ss_pred             cCE-EEEEEEEeCC
Confidence            998 9999999874

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>smart00409 IG Immunoglobulin

Probab=99.01  E-value=4.9e-09  Score=65.63  Aligned_cols=66  Identities=24%  Similarity=0.453  Sum_probs=54.0

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeec-ceeeecccCCCceEEEccC---ccEEEeccCCCCCCcceEEEeeccc
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQD-DVNIYLNTDTGGKYVVLSS---GDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d-~~~i~~~~~~~~ry~vlps---G~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      .+..|+++.|.|.+.+.+   .+.+.|.++ +..+.    .+.++.....   +.|.|.+++.+|+| .|+|.+.+..
T Consensus         5 ~~~~g~~~~l~C~~~~~~---~~~~~W~~~~~~~v~----~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~v~~~~   74 (86)
T smart00409        5 TVKEGESVTLSCEVSGSP---PPEVTWYKQGGKLLA----ESGRFSVSRSGSNSTLTISNVTPEDSG-TYTCAATNSS   74 (86)
T ss_pred             EEeCCCeEEEEEEEccCC---CCeEEEEECCCEEcC----CCCcEEEEEcCCeeEEEEEeeccccCe-EEEEEEEcCC
Confidence            788999999999998763   467899998 66653    2467766654   68999999999997 9999999876

>smart00410 IG_like Immunoglobulin like

Probab=99.01  E-value=4.9e-09  Score=65.63  Aligned_cols=66  Identities=24%  Similarity=0.453  Sum_probs=54.0

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeec-ceeeecccCCCceEEEccC---ccEEEeccCCCCCCcceEEEeeccc
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQD-DVNIYLNTDTGGKYVVLSS---GDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d-~~~i~~~~~~~~ry~vlps---G~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      .+..|+++.|.|.+.+.+   .+.+.|.++ +..+.    .+.++.....   +.|.|.+++.+|+| .|+|.+.+..
T Consensus         5 ~~~~g~~~~l~C~~~~~~---~~~~~W~~~~~~~v~----~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~v~~~~   74 (86)
T smart00410        5 TVKEGESVTLSCEVSGSP---PPEVTWYKQGGKLLA----ESGRFSVSRSGSNSTLTISNVTPEDSG-TYTCAATNSS   74 (86)
T ss_pred             EEeCCCeEEEEEEEccCC---CCeEEEEECCCEEcC----CCCcEEEEEcCCeeEEEEEeeccccCe-EEEEEEEcCC
Confidence            788999999999998763   467899998 66653    2467766654   68999999999997 9999999876

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.00  E-value=1.4e-09  Score=72.74  Aligned_cols=81  Identities=17%  Similarity=0.256  Sum_probs=52.2

Q ss_pred             CCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc---CccEEEeccCCCCCCcceEEEeecccCCeEEec
Q psy5694          34 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGESQAS  110 (129)
Q Consensus        34 GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp---sG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S  110 (129)
                      |++++|+|.+.+.+   .+.+.|.+++..+........+..+..   +..|.|.+++.+|.| .|.|.|.|...++. .+
T Consensus         1 Ge~~~l~C~~~~~~---~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG-~Y~C~a~n~~~~~~-~~   75 (84)
T cd05861           1 GETITVNCIVQGNE---VVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSG-TYECAAHESTQDQK-AF   75 (84)
T ss_pred             CCcEEEEEEEECCC---ccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCE-EEEEEEEECccCcc-ee
Confidence            78999999997755   367899876532110000011222221   357999999999997 99999999875442 23


Q ss_pred             ccceEEEEec
Q psy5694         111 VFQTRLSITG  120 (129)
Q Consensus       111 ~~~~~L~V~e  120 (129)
                      . ...|+|.|
T Consensus        76 ~-sv~i~V~~   84 (84)
T cd05861          76 K-KVNITVHE   84 (84)
T ss_pred             E-EEEEEEeC
Confidence            3 44666653

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>KOG4194|consensus

Probab=98.98  E-value=1.6e-09  Score=96.45  Aligned_cols=93  Identities=16%  Similarity=0.254  Sum_probs=76.4

Q ss_pred             eeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc-CccEEEeccCCCCCCcceEE
Q psy5694          19 QKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS-SGDLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        19 q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp-sG~L~I~nv~~~D~g~~Y~C   97 (129)
                      ..|.--|+|- ....|.+|.|.|.+.+.|+   |.++|.||+..=+|. ....|.+|+| +...+|.||..+|+| .|+|
T Consensus       613 PsFtktP~dl-tl~tg~mArl~CaAtG~P~---PeIawqkdggtdFPA-A~eRRl~Vmpedd~f~Itnvk~eD~G-iYtC  686 (873)
T KOG4194|consen  613 PSFTKTPEDL-TLRTGQMARLECAATGHPR---PEIAWQKDGGTDFPA-ARERRLHVMPEDDVFFITNVKIEDQG-IYTC  686 (873)
T ss_pred             CccccCcccc-eeecccceeeeeeccCCCC---cceeehhcCCCCCch-hhhheeeecCCCCEEEEecccccccc-eeEE
Confidence            4577778888 9999999999999999885   789999998443332 3568899998 455999999999998 9999


Q ss_pred             EeecccCCeEEecccceEEEEecC
Q psy5694          98 RTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        98 ~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      .|.|.. |+.++++   .|+|.|-
T Consensus       687 ~A~n~A-G~isanA---tL~V~e~  706 (873)
T KOG4194|consen  687 TAQNVA-GQISANA---TLTVLET  706 (873)
T ss_pred             eeeccc-cceeece---EEEEecC
Confidence            999988 7765554   8888875

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.97  E-value=3.7e-09  Score=75.65  Aligned_cols=81  Identities=16%  Similarity=0.160  Sum_probs=54.6

Q ss_pred             EeeeeeeEEEeCCeEEEEeeCCCCCCC-ceeEeEEeecc---e---ee-ecc---------cCCCceEEE-----ccCcc
Q psy5694          23 INVNYEHNVILGNTAVLRCQIPSYMSE-YIIVTSWIQDD---V---NI-YLN---------TDTGGKYVV-----LSSGD   80 (129)
Q Consensus        23 ~~v~~~~~V~~GntAvL~C~vp~~~~~-~v~v~sW~~d~---~---~i-~~~---------~~~~~ry~v-----lpsG~   80 (129)
                      +.+..++.+..|.+|.|.|.+.+..+. ....+.|....   .   .| ...         ..-.+|...     ..++.
T Consensus         2 v~~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daS   81 (116)
T cd05879           2 VYTDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGS   81 (116)
T ss_pred             eEccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeE
Confidence            445556689999999999999664321 24679994321   0   11 110         111246654     24566


Q ss_pred             EEEeccCCCCCCcceEEEeecccC
Q psy5694          81 LYVFNATPNDGYKSYRCRTVNKIT  104 (129)
Q Consensus        81 L~I~nv~~~D~g~~Y~C~a~N~lt  104 (129)
                      |.|+|++.+|.| .|.|.+.|...
T Consensus        82 I~I~nv~~sD~G-~Y~C~v~n~p~  104 (116)
T cd05879          82 IVIHNLDYTDNG-TFTCDVKNPPD  104 (116)
T ss_pred             EEEccCCcccCE-EEEEEEEcCCC
Confidence            999999999997 99999999864

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.95  E-value=9.1e-09  Score=81.26  Aligned_cols=73  Identities=15%  Similarity=0.201  Sum_probs=56.4

Q ss_pred             EEEeCCeEEEEeeCCCCCC--CceeEeEEeecceeeecccCCCceEEEccC-ccEEEeccCCCCCCcceEEEeecccCCe
Q psy5694          30 NVILGNTAVLRCQIPSYMS--EYIIVTSWIQDDVNIYLNTDTGGKYVVLSS-GDLYVFNATPNDGYKSYRCRTVNKITGE  106 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~--~~v~v~sW~~d~~~i~~~~~~~~ry~vlps-G~L~I~nv~~~D~g~~Y~C~a~N~ltge  106 (129)
                      .+..|.++.|.|.+.+.++  ...+.++|.+|+..|.+    ++|+.+..+ +.|.|.||+.+|+| .|+|.|.....|.
T Consensus       140 ~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~----~~r~~~~~~~~~L~I~~V~~~DsG-~YtC~a~~~~~g~  214 (227)
T PHA02826        140 QFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLY----TDRIQLRNNNSTLVIKSATHDDSG-IYTCNLRFNKNSN  214 (227)
T ss_pred             eEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCC----CCCEEEeCCCCEEEECcCCHHhCE-EEEEEEEEeECCE
Confidence            6678999999999864321  01367999999988743    457776654 57999999999998 9999999876555


Q ss_pred             E
Q psy5694         107 S  107 (129)
Q Consensus       107 ~  107 (129)
                      .
T Consensus       215 ~  215 (227)
T PHA02826        215 N  215 (227)
T ss_pred             E
Confidence            3

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.93  E-value=7.1e-09  Score=68.88  Aligned_cols=68  Identities=18%  Similarity=0.287  Sum_probs=51.7

Q ss_pred             CCeEEEEeeCCCCCCCceeEeEEeeccee-----eec---------ccCCCceEEEccCccEEEeccCCCCCCcceEEEe
Q psy5694          34 GNTAVLRCQIPSYMSEYIIVTSWIQDDVN-----IYL---------NTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        34 GntAvL~C~vp~~~~~~v~v~sW~~d~~~-----i~~---------~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a   99 (129)
                      |.+|+|+|.++...   ...+.|.+.+..     +..         ...-.+|+.+.++|.|.|+|++.+|+| .|+|..
T Consensus         1 G~~VtL~c~~~~~~---~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG-~Y~c~v   76 (92)
T cd05741           1 GESVTLPVSNLPEN---LQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSG-TYTLQI   76 (92)
T ss_pred             CCcEEEEcccCCCC---CEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcE-EEEEEE
Confidence            88999999987522   457899886521     110         012257888999999999999999997 999999


Q ss_pred             ecccCCe
Q psy5694         100 VNKITGE  106 (129)
Q Consensus       100 ~N~ltge  106 (129)
                      .+.. |+
T Consensus        77 ~~~~-~~   82 (92)
T cd05741          77 ISTN-GV   82 (92)
T ss_pred             EcCC-Cc
Confidence            9876 44

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.91  E-value=6.6e-09  Score=66.07  Aligned_cols=75  Identities=21%  Similarity=0.434  Sum_probs=54.7

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT  104 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~lt  104 (129)
                      ++.. .+..|..+.|.|.+++.+.   ..+.|.+++..|...           .+.|+|.+++.+|.| .|+|.+.|.-+
T Consensus         6 ~~~~-~v~~g~~~~l~C~~~~~p~---~~~~w~~~~~~~~~~-----------~~~~~~~~~~~~~~g-~y~C~~~~~~~   69 (80)
T PF13895_consen    6 SSPQ-SVEEGDSVTLTCSVSGNPP---PQVQWYKNGSPINSS-----------QNGLFIPNVSPEDSG-NYTCRASNGSG   69 (80)
T ss_dssp             EESS-EEETTSEEEEEEEEESSSS---SEEEEEETTEEEEEE-----------SSEEEESSEEGGGTE-EEEEEEEETTE
T ss_pred             ccce-EEeCCCcEEEEEEEEcccc---eeeeeeeeeeeeeee-----------eeeeeeeeeccccCE-EEEEEEEeCCC
Confidence            3345 7899999999999986554   468999988666421           112889999999997 99999999653


Q ss_pred             CeEEecccceEEEE
Q psy5694         105 GESQASVFQTRLSI  118 (129)
Q Consensus       105 ge~k~S~~~~~L~V  118 (129)
                        ...|. ...|.|
T Consensus        70 --~~~s~-~~~v~V   80 (80)
T PF13895_consen   70 --SNTST-SVNVTV   80 (80)
T ss_dssp             --EEEEE-EEEEEE
T ss_pred             --CeEee-eEEeeC
Confidence              24454 445554

...

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.90  E-value=4.4e-09  Score=72.82  Aligned_cols=73  Identities=22%  Similarity=0.273  Sum_probs=51.4

Q ss_pred             eEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-eeee---------cccCCCceEEEc----cCcc--EEEeccCCCCCC
Q psy5694          29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIY---------LNTDTGGKYVVL----SSGD--LYVFNATPNDGY   92 (129)
Q Consensus        29 ~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-~~i~---------~~~~~~~ry~vl----psG~--L~I~nv~~~D~g   92 (129)
                      |.+..|++|.|+|...+.+   .+.++|.+++ ..+.         ......+|+.+.    .+|+  |.|+|++.+|.|
T Consensus         2 v~~~~G~~VtL~C~~s~~~---~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsg   78 (94)
T cd07690           2 VLGKKGDTAELPCTASQKK---SIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSD   78 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCC---CcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCE
Confidence            3678999999999998655   4678998766 3211         001112333332    3454  999999999997


Q ss_pred             cceEEEeecccCCe
Q psy5694          93 KSYRCRTVNKITGE  106 (129)
Q Consensus        93 ~~Y~C~a~N~ltge  106 (129)
                       .|.|.+.|+. +|
T Consensus        79 -tY~C~v~~~~-~~   90 (94)
T cd07690          79 -TYICEVEDKK-EE   90 (94)
T ss_pred             -EEEEEECCcc-ce
Confidence             9999999987 55

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.89  E-value=2.6e-09  Score=72.37  Aligned_cols=79  Identities=20%  Similarity=0.234  Sum_probs=56.8

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEE-EccCccEEEeccCCCCCCcceEEEeecccCCeEE
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYV-VLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQ  108 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~-vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k  108 (129)
                      .|..|++++|+|+.+...    ....|++|+.....     .+-. --..++|.|.+|+.+|+| .|+|++.|...+...
T Consensus        12 vV~~G~~VtL~C~~~~~~----~~f~l~k~g~~~~~-----~~~~~~~~~~~f~i~~v~~~~~G-~Y~C~~~~~~~~~S~   81 (91)
T cd05751          12 VVPLGKPVTLRCQGPYGA----VEYRLYREGSTFAV-----KKPPEPQNKAKFFIPSMKREHAG-RYRCYYRSGVALWSE   81 (91)
T ss_pred             ccCCCCcEEEEEecCCCC----CEEEEEECCCCccc-----cccCCCceeEEEEccCCChhHCE-EEEEEEECCCCccCC
Confidence            578999999999986333    34689998743311     0000 012578999999999998 999999997545555


Q ss_pred             ecccceEEEEe
Q psy5694         109 ASVFQTRLSIT  119 (129)
Q Consensus       109 ~S~~~~~L~V~  119 (129)
                      .|+ +..|.|+
T Consensus        82 ~Sd-~lel~Vt   91 (91)
T cd05751          82 PSD-PLELVVT   91 (91)
T ss_pred             CCC-cEEEEeC
Confidence            666 7888875

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.85  E-value=2.7e-09  Score=66.50  Aligned_cols=58  Identities=21%  Similarity=0.401  Sum_probs=40.6

Q ss_pred             CCeEEEEeeC-CCCCCCceeEeEEeecceeeecccCCCceEEEccCcc-----EEEeccCCCCCCcceEEEe
Q psy5694          34 GNTAVLRCQI-PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD-----LYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        34 GntAvL~C~v-p~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~-----L~I~nv~~~D~g~~Y~C~a   99 (129)
                      |++|.|.|.+ ...+   ...++|.+++..+..    ........++.     |.|.+++++|+| .|.|.|
T Consensus         1 G~~v~L~C~~~~~~~---~~~~~W~~~~~~~~~----~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPP---PTTVTWSKNGQSLPE----GSTTNRSTNSVSSTSRLTISNVTPEDSG-TYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSS---TSEEEEEETTTTTSE----EEEEEEEETTTEEEEEEEESSCTGGGTE-EEEEEE
T ss_pred             CCeEEEEeecCCCCC---CcEEEEEECCccccC----cceeEeecccceeeeEEEEccCCHHHCE-EEEEEC
Confidence            8999999999 2222   356899999843311    12333333333     999999999997 999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.81  E-value=2e-08  Score=79.37  Aligned_cols=87  Identities=17%  Similarity=0.161  Sum_probs=57.7

Q ss_pred             eEEEeCCeEEEEeeCCCCCC--------CceeEeEEeecceee-ec-ccCC-------CceEEEccCccEEEeccCCCCC
Q psy5694          29 HNVILGNTAVLRCQIPSYMS--------EYIIVTSWIQDDVNI-YL-NTDT-------GGKYVVLSSGDLYVFNATPNDG   91 (129)
Q Consensus        29 ~~V~~GntAvL~C~vp~~~~--------~~v~v~sW~~d~~~i-~~-~~~~-------~~ry~vlpsG~L~I~nv~~~D~   91 (129)
                      +.|.+|++|+|+|.+..+++        .....+.|.|++... .. ..+.       ..++ -..+|.|.|.+++.+|+
T Consensus        32 ~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~-~~r~~~L~I~~v~~~Ds  110 (227)
T PHA02826         32 VYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEI-GDRSENLWIGNVINIDE  110 (227)
T ss_pred             EEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccce-ecCCCeEEECCCChHHC
Confidence            38999999999999755432        112468999987332 11 0000       1122 12468999999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEecC
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      | .|.|+|.|.. |....   ...|.|.++
T Consensus       111 G-~Y~C~a~N~~-~~~~~---~i~L~V~~~  135 (227)
T PHA02826        111 G-IYICTISSGN-ICEES---TIRLTFDSG  135 (227)
T ss_pred             E-EEEEEEEECC-cceEE---EEEEEEecC
Confidence            8 9999999976 44222   346777654

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.81  E-value=2.1e-08  Score=69.74  Aligned_cols=74  Identities=19%  Similarity=0.328  Sum_probs=54.7

Q ss_pred             EEEeCCeEEEEeeC-CCC-CCCceeEeEEeecceeeecccCCCceEEEc-cCccEEEeccCCCCCCcceEEEeecccCCe
Q psy5694          30 NVILGNTAVLRCQI-PSY-MSEYIIVTSWIQDDVNIYLNTDTGGKYVVL-SSGDLYVFNATPNDGYKSYRCRTVNKITGE  106 (129)
Q Consensus        30 ~V~~GntAvL~C~v-p~~-~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl-psG~L~I~nv~~~D~g~~Y~C~a~N~ltge  106 (129)
                      .+..|....|.|.= -.+ .+...+.+.|.||+.+|..   ...++... .++.|.|.+|+.+|+| .|+|.+.|..+|.
T Consensus         6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~---~~~~~~~~~~~~~L~I~~v~~~D~G-~YtC~~~~~~~g~   81 (95)
T cd05897           6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDK---DNEKFYSLKGSTYLHIIDVSLNDSG-YYTCKLQFTHEGK   81 (95)
T ss_pred             EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcC---CCcceEecCCCCEEEEEEcChhhCE-EEEEEEEEeeCCE
Confidence            45779999999962 122 1222357999999977742   34566664 3568999999999998 9999999998666


Q ss_pred             E
Q psy5694         107 S  107 (129)
Q Consensus       107 ~  107 (129)
                      .
T Consensus        82 ~   82 (95)
T cd05897          82 K   82 (95)
T ss_pred             E
Confidence            4

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>PHA02785 IL-beta-binding protein; Provisional

Probab=98.80  E-value=2.8e-08  Score=81.64  Aligned_cols=88  Identities=13%  Similarity=0.133  Sum_probs=61.7

Q ss_pred             eeeeeEEEeCCeEEEEeeCC-CCC-CCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          25 VNYEHNVILGNTAVLRCQIP-SYM-SEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp-~~~-~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      .... .+.+|..+.|.|... .+. .+..+.+.|.++. .+     .++|+.++++|.|.|.||+.+|+| .|+|.|.|.
T Consensus       128 ~~~~-~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~-~~-----~~~r~~~~~~~~L~i~~v~~~d~G-~Y~C~~~n~  199 (326)
T PHA02785        128 SYPQ-IVNERSTGEMVCPNINAFIASNVNADIIWSGHR-RL-----RNKRLKQRTPGIITIEDVRKNDAG-YYTCVLKYI  199 (326)
T ss_pred             eccc-eecccCcEEEECCChhhcccCCCCceEEEccCC-cc-----CCcceEecCCCeEEEeecChhhCe-EEEEEEEec
Confidence            3344 567999999999732 110 1223679998865 22     357899999999999999999997 999999999


Q ss_pred             cCCeEEecccceEEEEec
Q psy5694         103 ITGESQASVFQTRLSITG  120 (129)
Q Consensus       103 ltge~k~S~~~~~L~V~e  120 (129)
                      .++....-.....|.|.+
T Consensus       200 ~g~~~~~~t~~v~l~V~~  217 (326)
T PHA02785        200 YGDKTYNVTRIVKLEVRD  217 (326)
T ss_pred             cCCEEEeEEEEEEEEEec
Confidence            866532211134566653

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.79  E-value=2.1e-08  Score=67.44  Aligned_cols=81  Identities=17%  Similarity=0.144  Sum_probs=51.8

Q ss_pred             CCeEEEEeeCCCCCCCceeEeEEeecceee-ecccCCCceEEE----ccCccEEEeccCCCCCCcceEEEeecccCCeEE
Q psy5694          34 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNI-YLNTDTGGKYVV----LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQ  108 (129)
Q Consensus        34 GntAvL~C~vp~~~~~~v~v~sW~~d~~~i-~~~~~~~~ry~v----lpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k  108 (129)
                      |.++.|.|.+.+.+.. ...+.|...+..+ ........|...    .-++.|.|.+++.+|.| .|.|.|.|.. |.. 
T Consensus         1 Ge~~~L~C~~~~~~~~-~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG-~Y~C~a~n~~-~~~-   76 (86)
T cd05862           1 GEKLVLNCTARTELNV-GIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLG-RYTCTASSGQ-MIA-   76 (86)
T ss_pred             CCcEEEEEEEEeCCCC-cEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCE-EEEEEEeecc-eEe-
Confidence            7899999999643321 3457998766322 100001111111    13578999999999998 9999999975 442 


Q ss_pred             ecccceEEEEec
Q psy5694         109 ASVFQTRLSITG  120 (129)
Q Consensus       109 ~S~~~~~L~V~e  120 (129)
                       +. .+.|.|.|
T Consensus        77 -~~-~t~~~V~~   86 (86)
T cd05862          77 -KN-STIVIVHE   86 (86)
T ss_pred             -cc-cEEEEEeC
Confidence             33 55888865

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.79  E-value=4.4e-08  Score=66.46  Aligned_cols=69  Identities=23%  Similarity=0.387  Sum_probs=46.9

Q ss_pred             CCeEEEEeeCCCCCCCceeEeEEeecc--eee--eccc---------CCCceEEEcc------CccEEEeccCCCCCCcc
Q psy5694          34 GNTAVLRCQIPSYMSEYIIVTSWIQDD--VNI--YLNT---------DTGGKYVVLS------SGDLYVFNATPNDGYKS   94 (129)
Q Consensus        34 GntAvL~C~vp~~~~~~v~v~sW~~d~--~~i--~~~~---------~~~~ry~vlp------sG~L~I~nv~~~D~g~~   94 (129)
                      |++|.|+|.+.+........+.|++.+  ..+  +...         +-.+|+.+..      +..|.|.|++.+|+| .
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G-~   79 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEG-L   79 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCE-E
Confidence            789999999864433334468998865  222  1110         1125776532      246999999999997 9


Q ss_pred             eEEEeeccc
Q psy5694          95 YRCRTVNKI  103 (129)
Q Consensus        95 Y~C~a~N~l  103 (129)
                      |+|.+.|.-
T Consensus        80 Y~C~v~~~~   88 (100)
T cd05713          80 YTCFFQSDG   88 (100)
T ss_pred             EEEEEecCC
Confidence            999999864

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.76  E-value=4.2e-08  Score=67.18  Aligned_cols=85  Identities=20%  Similarity=0.283  Sum_probs=57.4

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecce------eeeccc----CCCceEEEcc-----CccEEEeccCCCCCCcc
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDV------NIYLNT----DTGGKYVVLS-----SGDLYVFNATPNDGYKS   94 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~------~i~~~~----~~~~ry~vlp-----sG~L~I~nv~~~D~g~~   94 (129)
                      .|.+|.+|.|.|.+....   ...+.|.+...      .+....    ...+||.+..     +-.|.|+|++.+|.| .
T Consensus         9 ~~~~G~~v~L~C~~~~~~---~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG-~   84 (109)
T cd04983           9 SVQEGENVTLNCNYSTST---FYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSA-V   84 (109)
T ss_pred             EEcCCCCEEEEEEECCCC---ccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCE-E
Confidence            889999999999988652   34679987531      121110    2357887753     236999999999997 9


Q ss_pred             eEEEeecccCCeEEecccceEEEE
Q psy5694          95 YRCRTVNKITGESQASVFQTRLSI  118 (129)
Q Consensus        95 Y~C~a~N~ltge~k~S~~~~~L~V  118 (129)
                      |.|.+.+.-.+.........+|.|
T Consensus        85 Y~C~~~~~~~~~~~~~g~gt~l~V  108 (109)
T cd04983          85 YFCALSESGGTGKLTFGKGTRLTV  108 (109)
T ss_pred             EEEEEecCCCCcceEECCCEEEEE
Confidence            999999764223233333556666

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.75  E-value=6.6e-08  Score=66.31  Aligned_cols=72  Identities=24%  Similarity=0.278  Sum_probs=52.6

Q ss_pred             EeCCeEEEEeeCCCCCCCceeEeEEeecc-eee-ecc----c-------CCCceEEEcc-CccEEEeccCCCCCCcceEE
Q psy5694          32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNI-YLN----T-------DTGGKYVVLS-SGDLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~-~~i-~~~----~-------~~~~ry~vlp-sG~L~I~nv~~~D~g~~Y~C   97 (129)
                      +.|+++.|+|.++.  ......+.|.+.. ..+ ...    .       .-.+|+.+.+ ++.|.|+|++.+|+| .|.|
T Consensus         2 ~~G~sVtL~c~~~~--~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG-~Y~c   78 (97)
T cd05775           2 ILGGSVTLPLNIPD--GTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAG-SYRA   78 (97)
T ss_pred             ccCCeEEEeCCCCC--CcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCE-EEEE
Confidence            46999999999874  1335789999865 222 110    0       1125777766 599999999999998 9999


Q ss_pred             EeecccCCeE
Q psy5694          98 RTVNKITGES  107 (129)
Q Consensus        98 ~a~N~ltge~  107 (129)
                      ...+.. |+.
T Consensus        79 ~v~~~~-~~~   87 (97)
T cd05775          79 EINTKN-GVT   87 (97)
T ss_pred             EEEcCC-CCe
Confidence            999876 553

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.73  E-value=6.6e-08  Score=66.34  Aligned_cols=82  Identities=17%  Similarity=0.290  Sum_probs=53.4

Q ss_pred             eCCeEEEEeeCCCCC---CCceeEeEEeecc-e-----e-eecc-------cCCCceEEEcc----CccEEEeccCCCCC
Q psy5694          33 LGNTAVLRCQIPSYM---SEYIIVTSWIQDD-V-----N-IYLN-------TDTGGKYVVLS----SGDLYVFNATPNDG   91 (129)
Q Consensus        33 ~GntAvL~C~vp~~~---~~~v~v~sW~~d~-~-----~-i~~~-------~~~~~ry~vlp----sG~L~I~nv~~~D~   91 (129)
                      +|++|.|+|.++..+   ......+.|.+.+ .     . +...       .+-.+|+.+..    +..|.|.|++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            599999999986543   1234568999864 1     1 1110       11246877743    34799999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEe
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      | .|+|.+.|.. |.  .+. ...|.|+
T Consensus        81 G-~Y~C~v~~~~-~~--~~~-~~~l~v~  103 (106)
T cd05877          81 G-RYRCEVIDGL-ED--ESV-VVALRLR  103 (106)
T ss_pred             E-EEEEEEEecc-cc--eEE-EEEEEEE
Confidence            7 9999999865 22  233 3355554

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.72  E-value=1e-07  Score=66.27  Aligned_cols=70  Identities=17%  Similarity=0.379  Sum_probs=52.5

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecc-eeeecc---cCCCceEEEcc-Ccc---EEEeccCCCCCCcceEEEeec
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLN---TDTGGKYVVLS-SGD---LYVFNATPNDGYKSYRCRTVN  101 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-~~i~~~---~~~~~ry~vlp-sG~---L~I~nv~~~D~g~~Y~C~a~N  101 (129)
                      .|.+|++|.|.|.+.....   ..++|++-+ ..|.-.   ...+.||.+.. +|+   |.|++++.+|+| .|.|++..
T Consensus         8 tv~~G~ta~L~C~v~~~~~---~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G-~Y~Cqv~t   83 (95)
T cd05881           8 TVVEGEVAIISCRVKNNDD---SVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEG-RYFCQLYT   83 (95)
T ss_pred             EEcCCCcEEEEEEEccCCc---cEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCE-EEEEEEEc
Confidence            8899999999999987653   347898765 333111   11467888765 454   999999999997 99999986


Q ss_pred             cc
Q psy5694         102 KI  103 (129)
Q Consensus       102 ~l  103 (129)
                      ..
T Consensus        84 ~p   85 (95)
T cd05881          84 DP   85 (95)
T ss_pred             cc
Confidence            43

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.72  E-value=4.2e-08  Score=66.32  Aligned_cols=71  Identities=17%  Similarity=0.287  Sum_probs=50.9

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eeeec--------ccCCCceEEEccCc-----cEEEeccCCCCC
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYL--------NTDTGGKYVVLSSG-----DLYVFNATPNDG   91 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i~~--------~~~~~~ry~vlpsG-----~L~I~nv~~~D~   91 (129)
                      .|.+|++|.|.|.+....+  ...+.|.+..     ..|..        .....+|+.+..++     .|.|+|++.+|+
T Consensus         2 ~v~~G~~v~L~C~~~~~~~--~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~   79 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFS--SYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDS   79 (105)
T ss_pred             eecCCCCEEEEEEEeCCcC--cceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHC
Confidence            6789999999999976522  3568998843     12211        01234688775433     699999999999


Q ss_pred             CcceEEEeeccc
Q psy5694          92 YKSYRCRTVNKI  103 (129)
Q Consensus        92 g~~Y~C~a~N~l  103 (129)
                      | .|.|.+.+..
T Consensus        80 G-~Y~C~v~~~~   90 (105)
T cd00099          80 A-VYYCAVSLSG   90 (105)
T ss_pred             E-EEEEEEecCC
Confidence            7 9999999864

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.71  E-value=1.3e-07  Score=63.60  Aligned_cols=71  Identities=20%  Similarity=0.344  Sum_probs=47.5

Q ss_pred             CeEEEEeeCCCCCCCceeEeEEeecce----ee--e-cc------cCCCceEEEc----cCccEEEeccCCCCCCcceEE
Q psy5694          35 NTAVLRCQIPSYMSEYIIVTSWIQDDV----NI--Y-LN------TDTGGKYVVL----SSGDLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        35 ntAvL~C~vp~~~~~~v~v~sW~~d~~----~i--~-~~------~~~~~ry~vl----psG~L~I~nv~~~D~g~~Y~C   97 (129)
                      .+|.|+|.++...+.....+.|.|.+.    .|  . +.      ..-.+|....    .++.|.|+||+.+|+| .|.|
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G-~Y~C   79 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEG-NYIC   79 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCE-EEEE
Confidence            368999998765433356799999652    11  1 10      0113455444    2578999999999997 9999


Q ss_pred             EeecccCCe
Q psy5694          98 RTVNKITGE  106 (129)
Q Consensus        98 ~a~N~ltge  106 (129)
                      .+.+...|.
T Consensus        80 ~v~~~~~g~   88 (98)
T cd05718          80 EFATFPQGN   88 (98)
T ss_pred             EEEeCCCCc
Confidence            998644354

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.67  E-value=1.2e-07  Score=65.10  Aligned_cols=83  Identities=17%  Similarity=0.316  Sum_probs=52.9

Q ss_pred             eCCeEEEEeeCCCCCC---CceeEeEEeecc------eeeec-cc-------CCCceEEEc----cCccEEEeccCCCCC
Q psy5694          33 LGNTAVLRCQIPSYMS---EYIIVTSWIQDD------VNIYL-NT-------DTGGKYVVL----SSGDLYVFNATPNDG   91 (129)
Q Consensus        33 ~GntAvL~C~vp~~~~---~~v~v~sW~~d~------~~i~~-~~-------~~~~ry~vl----psG~L~I~nv~~~D~   91 (129)
                      +|+.|+|+|.++..+.   .....+.|.+..      ..+.. ..       .-.+|....    .+..|.|+|++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            5999999999875531   224578998861      22211 10       011233321    356699999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEec
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      | .|+|.+.|.. +.  .+. ..+|.|+.
T Consensus        81 G-~Y~C~v~~~~-~~--~~~-~v~L~V~~  104 (106)
T cd05714          81 G-RYRCEVIDGI-ED--EQD-TVELEVRG  104 (106)
T ss_pred             E-EEEEEEEcCC-Cc--eEE-EEEEEEEE
Confidence            7 9999999864 32  244 55777753

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.62  E-value=2.6e-07  Score=62.01  Aligned_cols=87  Identities=21%  Similarity=0.351  Sum_probs=58.5

Q ss_pred             eeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecce-----eee-c---------ccCCCceEEEccCcc-----EEEec
Q psy5694          26 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDV-----NIY-L---------NTDTGGKYVVLSSGD-----LYVFN   85 (129)
Q Consensus        26 ~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~-----~i~-~---------~~~~~~ry~vlpsG~-----L~I~n   85 (129)
                      ...+.+.+|++|.|.|... . .+....+.|.+.+.     .|. .         ...-.+|+.+..++.     |.|.|
T Consensus         8 ~~~v~~~~G~~v~L~C~~~-~-~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~   85 (114)
T PF07686_consen    8 PSPVTVQEGESVTLPCSYS-S-SSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKN   85 (114)
T ss_dssp             ESEEEEETTSEEEEEEEEE-S-SSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESS
T ss_pred             CCeEEEecCCCEEEEEEEe-C-CCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECC
Confidence            3344899999999999998 2 23356789988432     222 0         012245777766555     99999


Q ss_pred             cCCCCCCcceEEEeecccCCeEEecccceEEEE
Q psy5694          86 ATPNDGYKSYRCRTVNKITGESQASVFQTRLSI  118 (129)
Q Consensus        86 v~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V  118 (129)
                      ++.+|+| .|.|.....  ++..... ..+|+|
T Consensus        86 l~~~DsG-~Y~C~v~~~--~~~~~~~-~~~L~V  114 (114)
T PF07686_consen   86 LQPSDSG-TYFCQVSTS--NEQSFGN-GTKLTV  114 (114)
T ss_dssp             ESGGGEE-EEEEEEEES--SEEEEEE-EEEEEE
T ss_pred             CCcCcCE-EEEEEEEEC--CCCEECC-cEEEEC
Confidence            9999997 999999987  3333333 445554

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.62  E-value=1.8e-07  Score=66.12  Aligned_cols=80  Identities=20%  Similarity=0.421  Sum_probs=51.1

Q ss_pred             EeeeeeeEEEeCCeEEEEeeCCCCCC-CceeEeEEee---c-c--eee-ecc----cCCC----ceEEEc-----cCccE
Q psy5694          23 INVNYEHNVILGNTAVLRCQIPSYMS-EYIIVTSWIQ---D-D--VNI-YLN----TDTG----GKYVVL-----SSGDL   81 (129)
Q Consensus        23 ~~v~~~~~V~~GntAvL~C~vp~~~~-~~v~v~sW~~---d-~--~~i-~~~----~~~~----~ry~vl-----psG~L   81 (129)
                      +.+..++.|.+|.+|.|.|.+....+ .....+.|.+   + +  ..+ .-.    ...+    +|+...     .+..|
T Consensus         2 ~~~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL   81 (115)
T cd05880           2 VYTSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASI   81 (115)
T ss_pred             eecCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEE
Confidence            34555568999999999999854332 1124589953   1 1  122 111    1122    343322     24559


Q ss_pred             EEeccCCCCCCcceEEEeeccc
Q psy5694          82 YVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        82 ~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      .|++++.+|+| .|.|.+.|.-
T Consensus        82 ~I~~v~~~D~G-~Y~C~v~~~~  102 (115)
T cd05880          82 LIWQLQPTDNG-TYTCQVKNPP  102 (115)
T ss_pred             EEeeCChhhCE-EEEEEEEeCC
Confidence            99999999997 9999999874

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.57  E-value=4.7e-07  Score=63.52  Aligned_cols=79  Identities=19%  Similarity=0.289  Sum_probs=50.3

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCC-CceeEeEEeecc------eee--ecccC----CCc----eEEEcc-----CccE
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMS-EYIIVTSWIQDD------VNI--YLNTD----TGG----KYVVLS-----SGDL   81 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~-~~v~v~sW~~d~------~~i--~~~~~----~~~----ry~vlp-----sG~L   81 (129)
                      .+...+.|.+|.+|.|.|.+....+ .....+.|.+..      ..+  +....    ..+    |+....     +..|
T Consensus         3 ~~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   82 (116)
T cd05715           3 YTPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASI   82 (116)
T ss_pred             ecCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEE
Confidence            3444458999999999999864321 123468997532      112  11100    123    333321     2459


Q ss_pred             EEeccCCCCCCcceEEEeeccc
Q psy5694          82 YVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        82 ~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      .|++++.+|+| .|.|.+.|.-
T Consensus        83 ~I~~v~~~D~G-~Y~C~v~~~~  103 (116)
T cd05715          83 VIHNLQFTDNG-TYTCDVKNPP  103 (116)
T ss_pred             EEeeCCcccCE-EEEEEEEeCC
Confidence            99999999997 9999999873

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.56  E-value=3e-07  Score=65.32  Aligned_cols=78  Identities=14%  Similarity=0.238  Sum_probs=52.8

Q ss_pred             EeeeeeeEEEeCCeEEEEeeCCC-C-------CCCceeEeEEeecceeeecccC---CCceEEEccCccEEEeccCCCCC
Q psy5694          23 INVNYEHNVILGNTAVLRCQIPS-Y-------MSEYIIVTSWIQDDVNIYLNTD---TGGKYVVLSSGDLYVFNATPNDG   91 (129)
Q Consensus        23 ~~v~~~~~V~~GntAvL~C~vp~-~-------~~~~v~v~sW~~d~~~i~~~~~---~~~ry~vlpsG~L~I~nv~~~D~   91 (129)
                      ++-+.- .+++|++++|+|.... +       ..+....+.|.|++..+....+   .+.|..+ ..+.|.|.++..+|.
T Consensus         5 ~~~~~~-~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~-~~~~Lwf~Pa~~eDS   82 (104)
T cd05896           5 VDLKKY-MVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSK-EEDSIWFRPAELQDS   82 (104)
T ss_pred             cceeeE-EEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEE-eCCEEEEEeCChhhC
Confidence            343444 8999999999999732 1       1222236899999633322111   1235543 467899999999999


Q ss_pred             CcceEEEeeccc
Q psy5694          92 YKSYRCRTVNKI  103 (129)
Q Consensus        92 g~~Y~C~a~N~l  103 (129)
                      | .|.|+++|.-
T Consensus        83 G-~Y~C~~rN~t   93 (104)
T cd05896          83 G-LYTCVLRNST   93 (104)
T ss_pred             e-EEEEEECCCC
Confidence            8 9999999973

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.56  E-value=4.7e-07  Score=62.36  Aligned_cols=79  Identities=22%  Similarity=0.389  Sum_probs=51.7

Q ss_pred             eEEEEeeCCCCCCCceeEeEEeecc-----eee---ecc-c-----CCCceEEEc-----cCccEEEeccCCCCCCcceE
Q psy5694          36 TAVLRCQIPSYMSEYIIVTSWIQDD-----VNI---YLN-T-----DTGGKYVVL-----SSGDLYVFNATPNDGYKSYR   96 (129)
Q Consensus        36 tAvL~C~vp~~~~~~v~v~sW~~d~-----~~i---~~~-~-----~~~~ry~vl-----psG~L~I~nv~~~D~g~~Y~   96 (129)
                      +|.|+|......++....+.|.+..     ..+   ... .     +-.+|....     .++.|.|+||+.+|+| .|.
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~G-tY~   80 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEG-KYK   80 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccce-EEE
Confidence            6899999976554446689999843     122   111 0     001333332     3778999999999998 999


Q ss_pred             EEeecccCCeEEecccceEEEE
Q psy5694          97 CRTVNKITGESQASVFQTRLSI  118 (129)
Q Consensus        97 C~a~N~ltge~k~S~~~~~L~V  118 (129)
                      |...+.-.|..  +. ...|+|
T Consensus        81 C~v~~~p~g~~--~~-~~~L~V   99 (100)
T cd05888          81 CRVITFPAGNF--EA-ELVLTV   99 (100)
T ss_pred             EEEEeCCCCCe--ee-EEEEEe
Confidence            99999766763  32 335555

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.51  E-value=9.4e-07  Score=61.49  Aligned_cols=77  Identities=25%  Similarity=0.368  Sum_probs=53.8

Q ss_pred             eEEEEeeCCCCCCCceeEeEEeecc----eee--ec-c------cCCCceEEE----ccCccEEEeccCCCCCCcceEEE
Q psy5694          36 TAVLRCQIPSYMSEYIIVTSWIQDD----VNI--YL-N------TDTGGKYVV----LSSGDLYVFNATPNDGYKSYRCR   98 (129)
Q Consensus        36 tAvL~C~vp~~~~~~v~v~sW~~d~----~~i--~~-~------~~~~~ry~v----lpsG~L~I~nv~~~D~g~~Y~C~   98 (129)
                      .|.|+|..+..  +.+..++|.|..    ..|  +. .      .+-.+|...    +.++.|.|+||+.+|+| .|+|.
T Consensus         2 ~vtL~C~~~~~--~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G-~Y~C~   78 (96)
T cd05887           2 NVTLKCRIQVN--ETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIG-VYICK   78 (96)
T ss_pred             CEEEEEEecCC--CcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccE-EEEEE
Confidence            58899998753  346789998742    222  11 0      011245554    34788999999999997 99999


Q ss_pred             eecccCCeEEecccceEEEE
Q psy5694          99 TVNKITGESQASVFQTRLSI  118 (129)
Q Consensus        99 a~N~ltge~k~S~~~~~L~V  118 (129)
                      ..+.-.|..+.+.   .|+|
T Consensus        79 v~tfP~G~~~~~~---~l~~   95 (96)
T cd05887          79 AVTFPLGNTQSST---TVTV   95 (96)
T ss_pred             EEeCCCCCeeEEE---EEEE
Confidence            9998889976655   5554

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.50  E-value=7.1e-07  Score=62.71  Aligned_cols=70  Identities=17%  Similarity=0.303  Sum_probs=47.4

Q ss_pred             eCCeEEEEeeCCCCCCC-------ceeEeEEeecc----eeee--cc------cCCCceEEEc------cCccEEEeccC
Q psy5694          33 LGNTAVLRCQIPSYMSE-------YIIVTSWIQDD----VNIY--LN------TDTGGKYVVL------SSGDLYVFNAT   87 (129)
Q Consensus        33 ~GntAvL~C~vp~~~~~-------~v~v~sW~~d~----~~i~--~~------~~~~~ry~vl------psG~L~I~nv~   87 (129)
                      .|.+|+|+|.++..+.+       ....+.|.+..    ..+.  ..      ..-.+|+.+.      .+..|.|+|++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            48999999999654421       13568998852    1211  00      1123577763      23559999999


Q ss_pred             CCCCCcceEEEeeccc
Q psy5694          88 PNDGYKSYRCRTVNKI  103 (129)
Q Consensus        88 ~~D~g~~Y~C~a~N~l  103 (129)
                      .+|+| .|+|.+.+..
T Consensus        81 ~sD~G-~Y~C~v~~~~   95 (110)
T cd05878          81 SSDSG-VYRCEVMHGI   95 (110)
T ss_pred             hhhCE-EEEEEEEeCC
Confidence            99997 9999999753

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.50  E-value=4.7e-07  Score=59.46  Aligned_cols=62  Identities=18%  Similarity=0.278  Sum_probs=42.1

Q ss_pred             EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc-------cEEEeccCCCCCCcceEEEeecccC
Q psy5694          37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG-------DLYVFNATPNDGYKSYRCRTVNKIT  104 (129)
Q Consensus        37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG-------~L~I~nv~~~D~g~~Y~C~a~N~lt  104 (129)
                      +.|.|.+.++.+.  +.++|++|+..|...   .....++++|       .|.|....++|.+ .|+|+|.|..-
T Consensus         2 ~~L~C~v~g~~P~--~~v~W~~~g~~l~~~---~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~-~y~C~a~n~~l   70 (82)
T cd05759           2 YNLTCRARGAKPA--AEIIWFRDGEVLDGA---TYSKELLKDGKRETTVSTLPITPSDHDTGR-TFTCRARNEAL   70 (82)
T ss_pred             EEEEEEEeCccCC--CEEEEEECCEEccCc---eeeeeEecCCCeEEEEEEEEEeCceecCCC-EEEEEEcCccC
Confidence            5799999875332  579999999877421   1112234444       5777777776665 99999999863

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.48  E-value=9e-07  Score=59.87  Aligned_cols=64  Identities=17%  Similarity=0.252  Sum_probs=46.0

Q ss_pred             EEEEeeCCCCCCCceeEeEEeecceeeeccc---CCCceEEEccCccEEEeccCCCCCCcceEEEeecccCC
Q psy5694          37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT---DTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITG  105 (129)
Q Consensus        37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~---~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltg  105 (129)
                      +.|.|..+++-|  .+.++|++|+..|....   ..++.|.+  +|.|.|.-....|. +.|.|.|.|....
T Consensus         2 ~~L~C~s~~skP--~a~i~W~k~~~~l~~~~~~~~~~~~~t~--~s~L~~~~~~~Ddg-~~~~C~A~n~a~~   68 (80)
T cd05885           2 VELTCLSPRSKP--AATLRWYRDRKELKGVISQQENGKTVSV--SNTIRFPVDRKDDG-AILSCEASHPALV   68 (80)
T ss_pred             EEEEEeCCCccC--CCeEEEEECCEECCCCcccccCCceEEE--EEEEEEEeeeccCC-cEEEEEEEChhhC
Confidence            679999988744  37899999998884321   12344553  68899966555555 6999999998753

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.47  E-value=1.1e-06  Score=62.59  Aligned_cols=70  Identities=19%  Similarity=0.319  Sum_probs=48.2

Q ss_pred             eCCeEEEEeeCCCCCCC---------ceeEeEEeecc----ee-eecc-------cCCCceEEEc------cCccEEEec
Q psy5694          33 LGNTAVLRCQIPSYMSE---------YIIVTSWIQDD----VN-IYLN-------TDTGGKYVVL------SSGDLYVFN   85 (129)
Q Consensus        33 ~GntAvL~C~vp~~~~~---------~v~v~sW~~d~----~~-i~~~-------~~~~~ry~vl------psG~L~I~n   85 (129)
                      .|++++|+|.+....++         ..+.+.|.|-.    .. |...       .+-.+|+.+.      .+-.|.|+|
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            48999999998654321         14578998742    12 2111       1122477764      256699999


Q ss_pred             cCCCCCCcceEEEeeccc
Q psy5694          86 ATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        86 v~~~D~g~~Y~C~a~N~l  103 (129)
                      ++.+|+| .|+|...+.+
T Consensus        81 l~~sDsG-~Y~C~V~~g~   97 (112)
T cd05900          81 LRSNDSG-TYRCEVMHGI   97 (112)
T ss_pred             cccccCE-EEEEEEecCC
Confidence            9999997 9999999876

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.47  E-value=7.2e-07  Score=61.72  Aligned_cols=69  Identities=22%  Similarity=0.303  Sum_probs=49.7

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eeee-cc--------cCCCceEEEccC----ccEEEeccCCCCC
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIY-LN--------TDTGGKYVVLSS----GDLYVFNATPNDG   91 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i~-~~--------~~~~~ry~vlps----G~L~I~nv~~~D~   91 (129)
                      .|.+|++|.|.|.+.. .   ...+.|+|..     ..|. ..        ....+||.+..+    -.|.|.+++.+|+
T Consensus         9 ~v~~G~~v~l~C~~~~-~---~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Ds   84 (110)
T cd05899           9 IKGRGQSVTLRCSQTS-G---HDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDS   84 (110)
T ss_pred             EEcCCCcEEEEEEECC-C---CCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhC
Confidence            8899999999999876 2   2568998853     1221 10        012468876432    3599999999999


Q ss_pred             CcceEEEeeccc
Q psy5694          92 YKSYRCRTVNKI  103 (129)
Q Consensus        92 g~~Y~C~a~N~l  103 (129)
                      | .|.|.+.+..
T Consensus        85 g-~Y~Ca~~~~~   95 (110)
T cd05899          85 A-VYLCASSLGG   95 (110)
T ss_pred             E-EEEEEeeCCC
Confidence            7 9999998753

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.46  E-value=2.1e-06  Score=60.68  Aligned_cols=80  Identities=18%  Similarity=0.211  Sum_probs=51.5

Q ss_pred             eEeeeeeeEEEeCCeEEEEeeCCCCC---CCceeEeEEeecc-e----ee-e-cc------cCCCceEEEc---cC--cc
Q psy5694          22 EINVNYEHNVILGNTAVLRCQIPSYM---SEYIIVTSWIQDD-V----NI-Y-LN------TDTGGKYVVL---SS--GD   80 (129)
Q Consensus        22 ~~~v~~~~~V~~GntAvL~C~vp~~~---~~~v~v~sW~~d~-~----~i-~-~~------~~~~~ry~vl---ps--G~   80 (129)
                      .++....+.+.+|.+++|+|......   .+....+.|.+.. .    .+ . ..      ..-.+||.++   ..  -.
T Consensus         2 ~vq~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~s   81 (119)
T cd05712           2 GLWMPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCS   81 (119)
T ss_pred             cccCCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEE
Confidence            34444555899999999999764221   1112457998754 1    11 1 00      0123688874   23  35


Q ss_pred             EEEeccCCCCCCcceEEEeecc
Q psy5694          81 LYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        81 L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      |.|+|++.+|+| .|.|+....
T Consensus        82 L~I~~l~~~Dsg-~Y~C~~~~~  102 (119)
T cd05712          82 LLISDAQPEDSG-KYFFRVELG  102 (119)
T ss_pred             EEEccCChhhCe-EEEEEEEcC
Confidence            999999999997 999998764

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.45  E-value=1.4e-06  Score=59.87  Aligned_cols=74  Identities=23%  Similarity=0.368  Sum_probs=50.8

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----ee-eeccc----CCCceEEEccCc---cEEEeccCCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VN-IYLNT----DTGGKYVVLSSG---DLYVFNATPNDG   91 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~-i~~~~----~~~~ry~vlpsG---~L~I~nv~~~D~   91 (129)
                      +... .|-+|++|.|.|.+.....  ...+.|++..     .. +....    ...+||.+..++   .|.|+|++.+|.
T Consensus         7 p~~~-~v~~G~~v~L~C~~~~~~~--~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Ds   83 (106)
T cd04980           7 PATL-SVSPGESATISCKASQSVS--SNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDA   83 (106)
T ss_pred             CCcE-EECCCCCEEEEEEECCCCC--CCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHC
Confidence            3444 7889999999999865431  1358998743     12 22110    123578775443   499999999999


Q ss_pred             CcceEEEeecc
Q psy5694          92 YKSYRCRTVNK  102 (129)
Q Consensus        92 g~~Y~C~a~N~  102 (129)
                      | .|.|.+.+.
T Consensus        84 g-~Y~Ca~~~~   93 (106)
T cd04980          84 A-VYYCQQYGT   93 (106)
T ss_pred             E-EEEEEEeCC
Confidence            7 999999764

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.45  E-value=2.3e-07  Score=57.82  Aligned_cols=58  Identities=21%  Similarity=0.299  Sum_probs=42.9

Q ss_pred             EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeec
Q psy5694          37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVN  101 (129)
Q Consensus        37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N  101 (129)
                      +.|.|.+.+.++  .+.++|..+.....    ...+.....++.|.|.+|..+|.| .|+|+|.|
T Consensus        18 ~~l~C~~~~~~~--~~~~~W~~~~~~~~----~~~~~~~~~~~~L~i~~v~~~~~g-~y~C~a~N   75 (75)
T PF13927_consen   18 VTLTCSAEGGPP--PPSISWYDSNPSFN----SNSRGSSSSNSTLTISNVTRSDNG-TYTCIASN   75 (75)
T ss_dssp             EEEEEEESSEES--SEEEEEETEEEEEE----EEEEEEEEEEEEEEESSCCGGGTE-EEEEEEEE
T ss_pred             EEEEEEEccccC--CeEEEEEecCCcee----eeeeeccceeeEEEEccCCHHhCc-EEEEEEEC
Confidence            999999998875  46789992221111    123444455789999999999998 89999987

...

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.44  E-value=8.2e-07  Score=60.27  Aligned_cols=84  Identities=20%  Similarity=0.309  Sum_probs=54.5

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecc---e--ee-ecc----cCCCceEEEccCcc---EEEeccCCCCCCcceE
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD---V--NI-YLN----TDTGGKYVVLSSGD---LYVFNATPNDGYKSYR   96 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~---~--~i-~~~----~~~~~ry~vlpsG~---L~I~nv~~~D~g~~Y~   96 (129)
                      .|.+|++|.|.|.+...... ...+.|++-.   .  .| ...    ....+||.+..++.   |.|++++.+|+| .|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~-~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg-~Y~   79 (98)
T cd04984           2 SVSPGETVTITCTGSSGNIS-GNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEA-DYY   79 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcC-CCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCE-EEE
Confidence            67899999999998653211 2347897743   1  12 111    11246888765544   999999999997 999


Q ss_pred             EEeecccCCeEEecccceEEEE
Q psy5694          97 CRTVNKITGESQASVFQTRLSI  118 (129)
Q Consensus        97 C~a~N~ltge~k~S~~~~~L~V  118 (129)
                      |.+.+.  ++..-.. ..+|+|
T Consensus        80 C~~~~~--~~~~fg~-gT~L~V   98 (98)
T cd04984          80 CQVWDS--NSYVFGG-GTKLTV   98 (98)
T ss_pred             EEEccC--CCCEECC-CEEEeC
Confidence            999864  3333343 445554

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.42  E-value=2e-06  Score=58.52  Aligned_cols=79  Identities=19%  Similarity=0.279  Sum_probs=51.0

Q ss_pred             CCeEEEEeeCCCCCCCceeEeEEeecc----eeee---cc------cCCCceEEEc----cCccEEEeccCCCCCCcceE
Q psy5694          34 GNTAVLRCQIPSYMSEYIIVTSWIQDD----VNIY---LN------TDTGGKYVVL----SSGDLYVFNATPNDGYKSYR   96 (129)
Q Consensus        34 GntAvL~C~vp~~~~~~v~v~sW~~d~----~~i~---~~------~~~~~ry~vl----psG~L~I~nv~~~D~g~~Y~   96 (129)
                      |++|.|.|......  .+..+.|.|..    ..|.   +.      .+-.+|..+.    .+..|.|+||+.+|+| .|+
T Consensus         1 G~~vtL~C~~~~~~--~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G-~Y~   77 (97)
T cd05846           1 GGNVTLSCNLTLPE--EVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEG-CYK   77 (97)
T ss_pred             CCcEEEEEEeCCCC--eeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeE-EEE
Confidence            88999999976432  13568998853    1221   10      0112354442    3556999999999997 999


Q ss_pred             EEeecccCCeEEecccceEEEE
Q psy5694          97 CRTVNKITGESQASVFQTRLSI  118 (129)
Q Consensus        97 C~a~N~ltge~k~S~~~~~L~V  118 (129)
                      |...+...|..  +. ...|+|
T Consensus        78 C~~~~~p~g~~--~~-~~~L~v   96 (97)
T cd05846          78 CIFNTFPDGSK--SG-TMCLTV   96 (97)
T ss_pred             EEEEeCCCCCe--ee-EEEEEE
Confidence            99988766662  33 345555

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.41  E-value=3.2e-06  Score=58.91  Aligned_cols=79  Identities=19%  Similarity=0.257  Sum_probs=51.9

Q ss_pred             eEEEEeeCCCC-CCCceeEeEEeecc----eee--ecc-------cCCCceEEEc----cCccEEEeccCCCCCCcceEE
Q psy5694          36 TAVLRCQIPSY-MSEYIIVTSWIQDD----VNI--YLN-------TDTGGKYVVL----SSGDLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        36 tAvL~C~vp~~-~~~~v~v~sW~~d~----~~i--~~~-------~~~~~ry~vl----psG~L~I~nv~~~D~g~~Y~C   97 (129)
                      .|.|+|.+... +...+..++|.+.+    ..+  +..       ..-.+|....    .++.|.|+|++.+|+| .|+|
T Consensus         2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G-~Y~C   80 (99)
T cd05886           2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEG-VYIC   80 (99)
T ss_pred             cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCE-EEEE
Confidence            58899999753 33445678998741    222  221       0113555543    2589999999999998 9999


Q ss_pred             EeecccCCeEEecccceEEEE
Q psy5694          98 RTVNKITGESQASVFQTRLSI  118 (129)
Q Consensus        98 ~a~N~ltge~k~S~~~~~L~V  118 (129)
                      ...|.-.|..  +. ...|+|
T Consensus        81 ~v~t~P~g~~--~~-~~~L~V   98 (99)
T cd05886          81 EFATFPTGNR--ES-QLNLTV   98 (99)
T ss_pred             EEEeCCCCCe--EE-EEEEEE
Confidence            9999766752  32 346665

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>PHA03376 BARF1; Provisional

Probab=98.38  E-value=4.7e-06  Score=65.48  Aligned_cols=98  Identities=18%  Similarity=0.102  Sum_probs=67.4

Q ss_pred             eEEEeCCeEEEEeeCCCCCCCceeEeEEeec----c-eeeecc--------cCCCceEEEcc-Cc--cEEEeccCCCCCC
Q psy5694          29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQD----D-VNIYLN--------TDTGGKYVVLS-SG--DLYVFNATPNDGY   92 (129)
Q Consensus        29 ~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d----~-~~i~~~--------~~~~~ry~vlp-sG--~L~I~nv~~~D~g   92 (129)
                      |.+..|..|+|.|.......+..-.+.|+|+    + ..|.-.        .+-.+|+.+.. +|  .|+|.+++.+|.|
T Consensus        21 Vta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdG  100 (221)
T PHA03376         21 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG  100 (221)
T ss_pred             hhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCc
Confidence            3788999999999986433334567999994    4 333221        12246777743 34  3999999999998


Q ss_pred             cceEEEeecccCCeEEecc----cceEEEEecCCCCCCC
Q psy5694          93 KSYRCRTVNKITGESQASV----FQTRLSITGKLKSLCT  127 (129)
Q Consensus        93 ~~Y~C~a~N~ltge~k~S~----~~~~L~V~ep~~~~~~  127 (129)
                       +|+|+.....+|..|..-    -+..|.|+...+.+|.
T Consensus       101 -tY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~  138 (221)
T PHA03376        101 -NYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPD  138 (221)
T ss_pred             -eEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCC
Confidence             999999987777766532    2233777776666654

>KOG4222|consensus

Probab=98.37  E-value=4.2e-07  Score=85.07  Aligned_cols=93  Identities=20%  Similarity=0.330  Sum_probs=78.7

Q ss_pred             eeeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccC-ccEEEeccCCCCCCcceE
Q psy5694          18 KQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS-GDLYVFNATPNDGYKSYR   96 (129)
Q Consensus        18 ~q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlps-G~L~I~nv~~~D~g~~Y~   96 (129)
                      .++|..++.+. .|..|.+|.+.|++++-|   .+.+.|-+++..+.     -.||.|+-+ -.|.|.+++..|+| +|.
T Consensus       225 ~P~f~~rp~~~-~v~~g~~~~f~c~v~GdP---~P~Vrwkk~~~~~P-----~~ry~i~~d~qtl~i~r~tp~deg-~y~  294 (1281)
T KOG4222|consen  225 KPWFWKRPKDL-AVLVGAAAEFDCRVGGDP---QPTVRWKKDDPSLP-----RSRYSILDDTQTLRIDRVTPTDEG-TYV  294 (1281)
T ss_pred             CCccccccccc-eeecccccccccccCCCC---CCceeeeccCCCCC-----ccceeeeeccccccccccCCCccc-cee
Confidence            47899999999 999999999999999776   46789988876663     478888765 89999999999998 999


Q ss_pred             EEeecccCCeEEecccceEEEEecCCCC
Q psy5694          97 CRTVNKITGESQASVFQTRLSITGKLKS  124 (129)
Q Consensus        97 C~a~N~ltge~k~S~~~~~L~V~ep~~~  124 (129)
                      |.|.|.++|-   +. .+.|+|+.|.+.
T Consensus       295 C~a~n~vG~l---~a-sa~ltV~apP~f  318 (1281)
T KOG4222|consen  295 CPAENLVGGL---EA-SATLTVQAPPSF  318 (1281)
T ss_pred             eecccccccc---cc-ccceEEecCccc
Confidence            9999999554   44 558999988764

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.36  E-value=1.1e-06  Score=58.54  Aligned_cols=67  Identities=22%  Similarity=0.483  Sum_probs=45.0

Q ss_pred             eCCeEEEEeeCCCCCCCceeEeEEeecceeeeccc-------CCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT-------DTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~-------~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      .|+.+.|.|.+.++.++ ...++|++|+..+....       ..++.|.+.  ..|.|....+.|.+ .|.|++.|.-
T Consensus        12 ~~~~~~L~C~a~g~~P~-~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~--s~l~v~~~~~~~~~-~y~C~v~h~~   85 (95)
T cd00098          12 LGGSVTLTCLATGFYPP-DITVTWLKNGKELTSGVTTTPPVPNSDGTYSVS--SQLTVSPSDWNSGD-TYTCVVTHES   85 (95)
T ss_pred             cCCCeEEEEEEeeEECC-CcEEEEEECCEECCCceeccccccCCCCCEEEE--EEEEECHHHhCCCC-CEEEEEEeCC
Confidence            59999999999887332 24689999997763221       122333331  34666666665665 9999999975

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.32  E-value=2.8e-06  Score=58.05  Aligned_cols=79  Identities=15%  Similarity=0.196  Sum_probs=50.1

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeec---ccCCCceEEEccCccEEEeccCCCCCCcceEEEeecc--cC
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYL---NTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK--IT  104 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~---~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~--lt  104 (129)
                      .|.+|++++|+|+.+.   ++ ....|.|++....+   .....+++.    .++.|.+++.+|+| .|+|.....  ..
T Consensus        11 vV~~G~~VTL~C~~~~---~~-~~f~l~k~g~~~~~~~~~~~~~~~~~----a~f~I~~~~~~~~G-~Y~C~~~~~~~~~   81 (94)
T cd05711          11 VVPSGENVTLQCHSDI---RF-DRFILYKEGRSKPVLHLYEKHHGGFQ----ASFPLGPVTPAHAG-TYRCYGSYNHSLY   81 (94)
T ss_pred             ccCCCCeEEEEEecCC---CC-CEEEEEECCCCCCceecccccCCeEE----EEEEecCCCcccCE-EEEEEEECCCCCc
Confidence            5789999999998764   22 35799998832211   001123343    37899999999998 999998532  22


Q ss_pred             CeEEecccceEEEE
Q psy5694         105 GESQASVFQTRLSI  118 (129)
Q Consensus       105 ge~k~S~~~~~L~V  118 (129)
                      .-+..|+ +..|.|
T Consensus        82 ~wS~~Sd-pl~l~V   94 (94)
T cd05711          82 EWSAPSD-PLKIVV   94 (94)
T ss_pred             cccCCCC-CeEEeC
Confidence            3333344 555543

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.32  E-value=2.6e-06  Score=59.19  Aligned_cols=71  Identities=14%  Similarity=0.284  Sum_probs=49.1

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----ee-eecc---------cCCCceEEEccC-----ccEEEeccCCC
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VN-IYLN---------TDTGGKYVVLSS-----GDLYVFNATPN   89 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~-i~~~---------~~~~~ry~vlps-----G~L~I~nv~~~   89 (129)
                      .+-+|++|.|.|.+...- .....+.|++..     .. +...         ....+||.+..+     ..|.|.+++.+
T Consensus         9 ~~~~G~~v~l~C~~~~~~-~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~   87 (116)
T cd04982           9 TREESKSVTISCKVSGID-FSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEKE   87 (116)
T ss_pred             EeCCCCCEEEEEEEeCCC-ccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCHH
Confidence            778899999999986521 112468998852     11 2111         012478887533     36999999999


Q ss_pred             CCCcceEEEeecc
Q psy5694          90 DGYKSYRCRTVNK  102 (129)
Q Consensus        90 D~g~~Y~C~a~N~  102 (129)
                      |+| .|.|.+.+.
T Consensus        88 Dsg-~Y~C~~~~~   99 (116)
T cd04982          88 DSA-TYYCAYWES   99 (116)
T ss_pred             HCE-EEEEEEecC
Confidence            997 999999753

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.30  E-value=4.1e-06  Score=56.12  Aligned_cols=60  Identities=20%  Similarity=0.241  Sum_probs=41.1

Q ss_pred             EEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEc--cC-ccEEEec-----cCCCCCCcceEEEeeccc
Q psy5694          37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL--SS-GDLYVFN-----ATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl--ps-G~L~I~n-----v~~~D~g~~Y~C~a~N~l  103 (129)
                      +.|.|.+.++-|.  +.++|++|+..|...     ...+.  ++ |...+..     +..+|.|+.|+|++.|.-
T Consensus         2 ~~LtC~a~g~~P~--~~ItW~k~g~~l~~~-----~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~   69 (83)
T cd07705           2 AKLRCTSSGSKPA--ANIKWRKGDQELEGA-----PTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHES   69 (83)
T ss_pred             EEEEEEecCccCC--CEeEEEECCEECCCc-----ceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcc
Confidence            6799999887443  489999999877421     11222  23 2344444     666777789999999985

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.25  E-value=8.5e-06  Score=57.59  Aligned_cols=67  Identities=19%  Similarity=0.260  Sum_probs=52.1

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccC--------CCceEEEccCccEEEeccCCCCCCcceEEEeec
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTD--------TGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVN  101 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~--------~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N  101 (129)
                      .|-.|..+.|+|.+.++|+.  ....|.++...+....+        ...||.    ..|.+..+..+|.| .|.|.|.|
T Consensus        14 ~v~~gE~~~L~V~ieAYP~p--~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~----S~L~L~Rlk~~E~G-~YTf~a~N   86 (101)
T cd05860          14 FVNAGENLDLIVEYEAYPKP--EHQQWIYMNRTLTNTSDHYVKSRNESNNRYV----SELHLTRLKGTEGG-TYTFLVSN   86 (101)
T ss_pred             EEECCCCEEEEEEEEeCCCC--eeeEEEcCCcccCccccceeEEeccCceEEE----EEEEEeecChhhCc-EEEEEEEC
Confidence            78999999999999999963  33799998755432211        112342    47999999999998 99999999


Q ss_pred             cc
Q psy5694         102 KI  103 (129)
Q Consensus       102 ~l  103 (129)
                      ..
T Consensus        87 ~~   88 (101)
T cd05860          87 SD   88 (101)
T ss_pred             CC
Confidence            97

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.25  E-value=5e-06  Score=56.18  Aligned_cols=72  Identities=15%  Similarity=0.225  Sum_probs=50.1

Q ss_pred             eEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eeeecc----cCCCceEEEcc---Cc--cEEEeccCCCCCCcc
Q psy5694          29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYLN----TDTGGKYVVLS---SG--DLYVFNATPNDGYKS   94 (129)
Q Consensus        29 ~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i~~~----~~~~~ry~vlp---sG--~L~I~nv~~~D~g~~   94 (129)
                      +.|.+|.+|.|+|.......  ...+.|.+..     ..|...    ....+|+.+..   +|  .|.|.+++.+|+| .
T Consensus         2 v~~~~G~~vtl~C~~~~~~~--~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG-~   78 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNR--SYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAG-W   78 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCC--CcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCE-E
Confidence            36889999999999865322  2457998854     122100    12346887742   23  4999999999997 9


Q ss_pred             eEEEeeccc
Q psy5694          95 YRCRTVNKI  103 (129)
Q Consensus        95 Y~C~a~N~l  103 (129)
                      |.|.+.+..
T Consensus        79 Y~C~~~~~~   87 (98)
T cd05716          79 YWCGVGDDG   87 (98)
T ss_pred             EEEEcccCC
Confidence            999998764

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>KOG4194|consensus

Probab=98.22  E-value=1.8e-06  Score=77.45  Aligned_cols=98  Identities=15%  Similarity=0.213  Sum_probs=70.4

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc-cCCCceEEE-----------ccCccEEEeccC
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-TDTGGKYVV-----------LSSGDLYVFNAT   87 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~-~~~~~ry~v-----------lpsG~L~I~nv~   87 (129)
                      .-..+|++. .++.|..+.|.|.+-++.++. -.+.|.+|....+.. .+..-+|..           .-.|.|+..||+
T Consensus       505 qI~~qPe~~-~al~g~nirftC~a~sssasp-lsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt  582 (873)
T KOG4194|consen  505 QIVTQPETV-SALIGENIRFTCNAYSSSASP-LSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVT  582 (873)
T ss_pred             ceecCchHh-hhhhccceEEEEEeccCCCCC-ceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeee
Confidence            456677777 899999999999997654432 458999988533211 122222221           125779999999


Q ss_pred             CCCCCcceEEEeecccCCeEEecccceEEEEecCCC
Q psy5694          88 PNDGYKSYRCRTVNKITGESQASVFQTRLSITGKLK  123 (129)
Q Consensus        88 ~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~~  123 (129)
                      .+|+| .|+|++.|.+ |.+ -|. .++|+|...++
T Consensus       583 ~td~g-rYQCVvtN~F-GSt-ysq-k~KltV~~~Ps  614 (873)
T KOG4194|consen  583 FTDEG-RYQCVVTNHF-GST-YSQ-KAKLTVNQAPS  614 (873)
T ss_pred             cccCc-eEEEEEeccc-Ccc-hhh-eeEEEeeccCc
Confidence            99998 9999999999 663 454 78999987654

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.19  E-value=8.1e-06  Score=57.37  Aligned_cols=80  Identities=11%  Similarity=0.172  Sum_probs=52.6

Q ss_pred             eEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCC--ceEEEccCccEEEeccCCCCCCcceEEEe
Q psy5694          22 EINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTG--GKYVVLSSGDLYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        22 ~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~--~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a   99 (129)
                      +..+... .+.+|+...|.|.+++.-+...-.+.|++++..|......+  .+- ....-.|.+. +..+|.|+.|+|+|
T Consensus         5 ~l~~~p~-~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~-~~~~stlt~~-~~r~D~g~~~sC~A   81 (100)
T cd05755           5 ELSPLPS-WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSP-VNAPATITIT-VDREDHGANFSCET   81 (100)
T ss_pred             EEecCCC-cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCC-ceeEEEEEEe-cchhhCCcEEEEEE
Confidence            3444455 67899999999999887443222479999997774321010  000 1122345554 78899999999999


Q ss_pred             ecccC
Q psy5694         100 VNKIT  104 (129)
Q Consensus       100 ~N~lt  104 (129)
                      .+.+.
T Consensus        82 ~l~l~   86 (100)
T cd05755          82 ELDLR   86 (100)
T ss_pred             EeccC
Confidence            99883

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.16  E-value=1.2e-05  Score=53.28  Aligned_cols=62  Identities=16%  Similarity=0.290  Sum_probs=40.1

Q ss_pred             EEEEeeCCCCCCCceeEeEEeecceeeeccc-----CCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT-----DTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~-----~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      +.|.|.+.++-+.  +.++|++++..|....     ..++.|.+.  ..|.+ ..+.+|.|+.|+|++.|..
T Consensus         2 ~~L~C~~~~~~P~--~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~--s~l~~-~~~~~d~g~~~~C~v~h~~   68 (82)
T cd05761           2 VELTCTSSGSKPA--ATIRWFKGDKELKGVKLKEEDENGKTFTVT--SSLRF-QVDREDDGAPIICRVDHPA   68 (82)
T ss_pred             EEEEEEecCcCcC--CeEEEEECCEEccCceeeEecCCCCEEEEE--EEEEE-EcchhhCCCEEEEEEeChh
Confidence            6799999877333  5899999997774210     012233331  23333 5666677779999999985

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.16  E-value=1e-05  Score=56.04  Aligned_cols=71  Identities=21%  Similarity=0.281  Sum_probs=46.9

Q ss_pred             eEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-e--e------ee-ccc--------CCCceEEE--ccCc---cEEEec
Q psy5694          29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-V--N------IY-LNT--------DTGGKYVV--LSSG---DLYVFN   85 (129)
Q Consensus        29 ~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-~--~------i~-~~~--------~~~~ry~v--lpsG---~L~I~n   85 (129)
                      +.|-.|++|.|.|.+.....  ...+.|++-. .  +      +. ...        -..+||.+  .+++   .|.|.+
T Consensus         1 ~~v~~G~~vtL~C~~~~~~~--~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   78 (107)
T cd07700           1 ILVQTNNTVKLSCEAKGISE--NTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINR   78 (107)
T ss_pred             CEEcCCCCEEEEEEEecCCC--CCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECC
Confidence            36788999999999764321  2368998743 1  1      11 100        01357765  3333   399999


Q ss_pred             cCCCCCCcceEEEeecc
Q psy5694          86 ATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        86 v~~~D~g~~Y~C~a~N~  102 (129)
                      ++.+|+| .|.|...+.
T Consensus        79 ~~~~Dsg-~YyCa~~~~   94 (107)
T cd07700          79 VKPEDSG-TYFCMTVGS   94 (107)
T ss_pred             CCHHHCE-EEEEeEcCC
Confidence            9999997 999998743

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.14  E-value=2.3e-05  Score=54.39  Aligned_cols=69  Identities=29%  Similarity=0.389  Sum_probs=49.1

Q ss_pred             eEEEEeeCCCCCCCceeEeEEeecc----eee--e-cc--c----CCCceEEEc----cCccEEEeccCCCCCCcceEEE
Q psy5694          36 TAVLRCQIPSYMSEYIIVTSWIQDD----VNI--Y-LN--T----DTGGKYVVL----SSGDLYVFNATPNDGYKSYRCR   98 (129)
Q Consensus        36 tAvL~C~vp~~~~~~v~v~sW~~d~----~~i--~-~~--~----~~~~ry~vl----psG~L~I~nv~~~D~g~~Y~C~   98 (129)
                      .+.|.|..+.  ++.+..++|.|-.    ..|  + +.  .    +-.+|....    .++.|.|+||+.+|+| .|+|.
T Consensus         2 ~vtL~C~~~~--~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G-~Y~C~   78 (96)
T cd05889           2 KMKLECVYPK--TGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVG-LYCCS   78 (96)
T ss_pred             CEEEEeEcCC--CCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCE-EEEEE
Confidence            5789999975  3457889998842    123  1 11  0    112455544    3688999999999998 99999


Q ss_pred             eecccCCeE
Q psy5694          99 TVNKITGES  107 (129)
Q Consensus        99 a~N~ltge~  107 (129)
                      ....-.|..
T Consensus        79 ~~t~P~g~~   87 (96)
T cd05889          79 LVTYPQGSW   87 (96)
T ss_pred             EEeCCCCCe
Confidence            998887874

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.12  E-value=2.3e-05  Score=53.27  Aligned_cols=63  Identities=13%  Similarity=0.199  Sum_probs=44.4

Q ss_pred             EEEEeeCCCCCCCceeEeEEeecceeeecccC----CCceEEEccCccEEEeccCCCCCCcceEEEeecccC
Q psy5694          37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTD----TGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT  104 (129)
Q Consensus        37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~----~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~lt  104 (129)
                      +.|.|...++-|  .+.++|++++.+|....+    .++.+.+.  ..|.+ .++.+|.|+.|+|+|.|+.-
T Consensus         2 ~~L~C~s~gSkP--~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~--S~L~~-~p~~eDdG~~~~C~a~~~~l   68 (82)
T cd05883           2 IELNCTAMASKP--AATIRWFKGNKELTGKSTVEETWSRMFTVT--SQLML-KVTKEDDGVPVICLVDHPAV   68 (82)
T ss_pred             EEEEEEecCCCC--CCEEEEEECCEECcCcccceeccCCCcEEE--EEEEE-ECchhhCCCEEEEEEcCccc
Confidence            468999988855  378999999987743211    11223332  34555 78999999999999999863

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.06  E-value=1.2e-05  Score=57.17  Aligned_cols=70  Identities=19%  Similarity=0.244  Sum_probs=45.9

Q ss_pred             eCCeEEEEeeCCCCCC--C--ceeEeEEeec------c-eeee-cc-------cCCCceEEEcc------CccEEEeccC
Q psy5694          33 LGNTAVLRCQIPSYMS--E--YIIVTSWIQD------D-VNIY-LN-------TDTGGKYVVLS------SGDLYVFNAT   87 (129)
Q Consensus        33 ~GntAvL~C~vp~~~~--~--~v~v~sW~~d------~-~~i~-~~-------~~~~~ry~vlp------sG~L~I~nv~   87 (129)
                      .|.+|.|+|++...|.  .  ..+.+.|.+-      . ..+. ..       .+-.+|..+..      +-.|.|+|++
T Consensus         1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~   80 (110)
T cd05902           1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR   80 (110)
T ss_pred             CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence            3889999999543222  1  2467899874      1 1111 10       12245766643      3469999999


Q ss_pred             CCCCCcceEEEeeccc
Q psy5694          88 PNDGYKSYRCRTVNKI  103 (129)
Q Consensus        88 ~~D~g~~Y~C~a~N~l  103 (129)
                      .+|.| .|+|...+..
T Consensus        81 ~~D~G-~Y~C~v~~g~   95 (110)
T cd05902          81 YSDSG-TYRCEVVLGI   95 (110)
T ss_pred             HHHCE-EEEEEEEECC
Confidence            99997 9999999853

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.04  E-value=2.9e-05  Score=54.09  Aligned_cols=71  Identities=18%  Similarity=0.256  Sum_probs=49.8

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eeeec---c--cCCCceEEEc--cC-c--cEEEeccCCCCCCcc
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYL---N--TDTGGKYVVL--SS-G--DLYVFNATPNDGYKS   94 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i~~---~--~~~~~ry~vl--ps-G--~L~I~nv~~~D~g~~   94 (129)
                      .|.+|.+|.|+|.+.....  ...+.|.+-.     ..|..   .  ....+||.+.  .+ +  .|.|.+++.+|.| .
T Consensus        10 ~~~~G~~v~L~C~~~~~~~--~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg-~   86 (116)
T cd07706          10 SVQVGEEVTLNCRYETSWT--NYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSA-K   86 (116)
T ss_pred             EEcCCCCEEEEEEEeCCCC--ceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCE-E
Confidence            8899999999999865322  2468998732     11211   0  1235789875  22 2  4999999999997 9


Q ss_pred             eEEEeeccc
Q psy5694          95 YRCRTVNKI  103 (129)
Q Consensus        95 Y~C~a~N~l  103 (129)
                      |.|...+..
T Consensus        87 Y~C~~~~~~   95 (116)
T cd07706          87 YFCALSTLG   95 (116)
T ss_pred             EEEEEECCC
Confidence            999999653

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>smart00406 IGv Immunoglobulin V-Type

Probab=98.03  E-value=1.1e-05  Score=51.34  Aligned_cols=62  Identities=16%  Similarity=0.296  Sum_probs=41.3

Q ss_pred             eEEEEeeCCCCCCCceeEeEEeecc-----eeeecc---------cCCCceEEEccC-----ccEEEeccCCCCCCcceE
Q psy5694          36 TAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYLN---------TDTGGKYVVLSS-----GDLYVFNATPNDGYKSYR   96 (129)
Q Consensus        36 tAvL~C~vp~~~~~~v~v~sW~~d~-----~~i~~~---------~~~~~ry~vlps-----G~L~I~nv~~~D~g~~Y~   96 (129)
                      +|.|.|.+...... ...+.|++..     ..|...         ....+|+.+...     ..|.|.|++.+|+| .|.
T Consensus         1 ~v~l~C~~~~~~~~-~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~   78 (81)
T smart00406        1 SVTLSCKASGFTFS-SYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTG-TYY   78 (81)
T ss_pred             CEEEEEEEeccccc-eeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCE-EEE
Confidence            57899998654432 2468998844     122110         023578877643     44999999999997 999


Q ss_pred             EEe
Q psy5694          97 CRT   99 (129)
Q Consensus        97 C~a   99 (129)
                      |..
T Consensus        79 C~v   81 (81)
T smart00406       79 CAV   81 (81)
T ss_pred             EcC
Confidence            963

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.01  E-value=3.3e-05  Score=51.88  Aligned_cols=62  Identities=16%  Similarity=0.218  Sum_probs=41.0

Q ss_pred             EEEEeeCCCCCCCceeEeEEeecceeeeccc------CCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT------DTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~------~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      +.|.|.+.++-|.  ..++|++++..+....      ..++.|.+.  -.|.|. .+.+|.|..|+|++.|..
T Consensus         2 ~~LtC~a~gf~P~--~~itW~kng~~l~~~~~~~~~~~~~~t~~~~--s~L~~~-~~~~d~g~~ytC~v~h~~   69 (83)
T cd05884           2 MQLTCKTSGSKPA--ADIRWFKNDKEIKDVKYLKEEDANRKTFTVS--STLDFR-VDRSDDGVAIICRVDHES   69 (83)
T ss_pred             EEEEEEeCCccCC--CEEEEEECCEECcCceeeEeeCCCCCEEEEE--EEEEEE-cccccCCCEEEEEEechh
Confidence            5799999887554  6789999997763210      122333332  245554 555677789999999975

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=97.94  E-value=6.8e-05  Score=54.15  Aligned_cols=69  Identities=17%  Similarity=0.399  Sum_probs=45.1

Q ss_pred             CCeEEEEeeCCCCCC--------CceeEeEEeec----------ceee-ecc-------cCCCceEEEc------cCccE
Q psy5694          34 GNTAVLRCQIPSYMS--------EYIIVTSWIQD----------DVNI-YLN-------TDTGGKYVVL------SSGDL   81 (129)
Q Consensus        34 GntAvL~C~vp~~~~--------~~v~v~sW~~d----------~~~i-~~~-------~~~~~ry~vl------psG~L   81 (129)
                      |.+|+|+|++...|+        ..-..+.|.+-          +..+ ...       .+-.+|..+.      .+-.|
T Consensus         2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL   81 (117)
T cd05901           2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL   81 (117)
T ss_pred             CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence            788999999853331        11246788662          1111 111       1224566654      25669


Q ss_pred             EEeccCCCCCCcceEEEeeccc
Q psy5694          82 YVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        82 ~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      .|+|++.+|.| .|+|...+..
T Consensus        82 ~i~~v~~sD~G-~Y~C~V~~g~  102 (117)
T cd05901          82 TIVKLRASDAG-VYRCEVMHGI  102 (117)
T ss_pred             EEcccccccCE-EEEEEEEECC
Confidence            99999999997 9999999876

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.93  E-value=6e-05  Score=53.34  Aligned_cols=90  Identities=17%  Similarity=0.179  Sum_probs=55.7

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc---ee--e---ecc-------cCCCceEEEc--cCc---cEEEe
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD---VN--I---YLN-------TDTGGKYVVL--SSG---DLYVF   84 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~---~~--i---~~~-------~~~~~ry~vl--psG---~L~I~   84 (129)
                      +... .|-+|++|.|+|.+...... ...+.|++-.   .+  |   ...       ....+||.+.  ++.   .|.|.
T Consensus         4 ~~~~-~v~~G~~vtL~C~~~~~~~~-~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~   81 (117)
T cd04981           4 SGPG-LVKPGQSLKLSCKASGFTFT-SYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLN   81 (117)
T ss_pred             CCCe-EEcCCCCEEEEEEEeCCCcc-cceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEEC
Confidence            4444 78899999999987532211 1347897733   22  2   110       1124688775  222   59999


Q ss_pred             ccCCCCCCcceEEEeeccc---CCeEEecccceEEEE
Q psy5694          85 NATPNDGYKSYRCRTVNKI---TGESQASVFQTRLSI  118 (129)
Q Consensus        85 nv~~~D~g~~Y~C~a~N~l---tge~k~S~~~~~L~V  118 (129)
                      +++.+|++ .|.|.+....   +++..-.. ..+|.|
T Consensus        82 ~~~~~Dsa-~YyCa~~~~~~~~~~~~~FG~-GT~L~V  116 (117)
T cd04981          82 SLTPEDTA-VYYCARGLGGYGYGYFDYWGQ-GTLVTV  116 (117)
T ss_pred             CCCHHHCE-EEEEEEEcCCCCCccEeeECC-CEEEEE
Confidence            99999997 9999987532   23433343 456665

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=97.93  E-value=8.7e-05  Score=57.76  Aligned_cols=89  Identities=17%  Similarity=0.204  Sum_probs=58.8

Q ss_pred             eEEEeCCeEEEEeeCCCCCCCceeEeEEeecceee--ecc-c-----CCCceEEEc----cCccEEEeccCCCCCCcceE
Q psy5694          29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI--YLN-T-----DTGGKYVVL----SSGDLYVFNATPNDGYKSYR   96 (129)
Q Consensus        29 ~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i--~~~-~-----~~~~ry~vl----psG~L~I~nv~~~D~g~~Y~   96 (129)
                      +.|.+|+.|.|.|.....  ...+.+.|.|....+  +.. .     +-.+|+..+    -+-.|.|.||+.+|+| .|+
T Consensus        25 v~V~ege~VtLsCs~t~s--~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeG-cY~  101 (189)
T PHA02987         25 ITVSEHVNVKISCNKTSS--FNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNG-CYT  101 (189)
T ss_pred             EEEcCCCCEEEEEecCCC--CccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCe-EEE
Confidence            378999999999998522  124678999974332  111 0     012466542    3556999999999998 999


Q ss_pred             EEeecccCCeEEecccceEEEEecCC
Q psy5694          97 CRTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        97 C~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      |...-...|. ..+. ..-|.|+.+.
T Consensus       102 C~F~tfp~G~-~~~g-t~CLtVt~~~  125 (189)
T PHA02987        102 CIFNTLLSKN-NEKG-VVCLNVTTDS  125 (189)
T ss_pred             EEEEecCCCC-Ccee-EEEEEEEchh
Confidence            9998766662 1233 4467776543

>cd00096 Ig Immunoglobulin domain

Probab=97.89  E-value=3e-05  Score=45.28  Aligned_cols=63  Identities=17%  Similarity=0.244  Sum_probs=43.6

Q ss_pred             EEEEeeCCCCCCCceeEeEEeecceeeecccC---CCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          37 AVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTD---TGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        37 AvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~---~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      +.|.|.+...+   ...+.|.+++........   ............|.|.+++.+|.| .|.|.+.+..
T Consensus         1 ~~l~C~~~~~~---~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPP---PPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSG-TYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCC---CCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCc-EEEEEEecCc
Confidence            46899998732   357899998754422110   012223345678999999999997 9999999875

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=97.82  E-value=0.00023  Score=51.08  Aligned_cols=70  Identities=19%  Similarity=0.367  Sum_probs=43.0

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeee-----cc--------cCCCceEEEccCccEEEeccCCCCCCcceE
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIY-----LN--------TDTGGKYVVLSSGDLYVFNATPNDGYKSYR   96 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~-----~~--------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~   96 (129)
                      ....|+.+.|.|.+.++.+. ...++|++++....     ..        ...++-|.+.  ..|.|. .+.+|.|+.|.
T Consensus        49 ~~~~~~~~~L~C~a~g~~P~-~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~--s~L~v~-~~~~~~g~~yt  124 (139)
T cd05771          49 VSMIEEPQTLICHIAGYYPL-DVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLS--SHLTLE-PGTEDAGATYT  124 (139)
T ss_pred             eeecCCcEEEEEEECCCCCC-CeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEE--EEEEec-CCccCCCCEEE
Confidence            33479999999999886432 15689999873210     00        0123334332  334444 45556667999


Q ss_pred             EEeeccc
Q psy5694          97 CRTVNKI  103 (129)
Q Consensus        97 C~a~N~l  103 (129)
                      |++.|.-
T Consensus       125 C~V~H~~  131 (139)
T cd05771         125 CRVSHVS  131 (139)
T ss_pred             EEEEcCC
Confidence            9999863

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.75  E-value=8.6e-05  Score=52.71  Aligned_cols=69  Identities=14%  Similarity=0.297  Sum_probs=43.2

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeeccc-----CCC-ceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT-----DTG-GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~-----~~~-~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      ....|+.+.|.|.+.++-+. ...++|++|+..+....     ..+ +.|.+.  -.|.|. ...+|.+..|.|.+.|.
T Consensus        17 ~~~~g~~~tL~C~a~gF~P~-~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~--S~L~~~-~~~~d~~~~ytC~V~H~   91 (111)
T cd05772          17 RANPGQSVNFTCSAHGFSPR-DITVKWLKNGNELSAEQPNITPEGDSVSYNVT--STVQVK-LTEDDVHSQVTCEVQHR   91 (111)
T ss_pred             ccCCCCCEEEEEEEeeEeCC-CCEEEEEECCEECcccccceeeCCCCCcEEEE--EEEEEE-CccccccCceEEEEEeC
Confidence            44578899999999887443 24689999997763210     011 133331  123333 45566565799999997

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.64  E-value=0.00016  Score=50.28  Aligned_cols=67  Identities=16%  Similarity=0.300  Sum_probs=41.6

Q ss_pred             EeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEe----ccCCCCCCcceEEEeecc
Q psy5694          32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVF----NATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~----nv~~~D~g~~Y~C~a~N~  102 (129)
                      ..|+.|+|.|.+.++.+.. ..++|++|+..+....   ....++++|+.+-.    .+.+++.|..|+|.+.|.
T Consensus        14 ~~~~~~tL~C~a~gFyP~~-I~v~W~kng~~~~~~~---~~~~~~~~~dty~~~S~L~vt~~~~~~~ysC~V~H~   84 (96)
T cd07697          14 EKQGQGIYLCLLENFFPDV-IQVHWREGNSPSILGS---QKSEKDKDNDVYSTTSWLTVTKDSLGKKFRCIYKHE   84 (96)
T ss_pred             ccCCCEEEEEEEEEEeCCC-eEEEEEECCEECcCCe---EeccEecCCCEEEEEEEEEECchhCCCeEEEEEEEC
Confidence            4578899999998875543 4579999997653210   11123344442221    345544455799999995

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.62  E-value=0.00012  Score=50.65  Aligned_cols=68  Identities=19%  Similarity=0.258  Sum_probs=45.2

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecc-e------ee-eccc----------CCCceEEEcc---CccEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-V------NI-YLNT----------DTGGKYVVLS---SGDLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-~------~i-~~~~----------~~~~ry~vlp---sG~L~I~nv~~   88 (129)
                      .|-.|++|.|.|.+....   ...+.|.+-. .      .| ....          ...+||.+..   ...|.|.+++.
T Consensus         2 ~v~~G~~vtL~C~~~~~~---~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~   78 (104)
T cd05720           2 DAELGQKVELKCEVLNSS---PTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQK   78 (104)
T ss_pred             cccCCCeEEEEEEecCCC---CCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCH
Confidence            356899999999875431   2347897743 2      11 1100          0145787643   33599999999


Q ss_pred             CCCCcceEEEeec
Q psy5694          89 NDGYKSYRCRTVN  101 (129)
Q Consensus        89 ~D~g~~Y~C~a~N  101 (129)
                      +|+| .|.|...+
T Consensus        79 sDsg-tY~Ca~~~   90 (104)
T cd05720          79 ENEG-YYFCSVAS   90 (104)
T ss_pred             HHCE-EEEEEEcc
Confidence            9997 99999874

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.60  E-value=0.00023  Score=46.33  Aligned_cols=64  Identities=19%  Similarity=0.422  Sum_probs=38.2

Q ss_pred             eEEEEeeCCCCCCCceeEeEEeecceeeecc-------cCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          36 TAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        36 tAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~-------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      .|.|.|.+.++-+. ...+.|++|+..+...       .+.++.|.+.  ..|.|.-..+ |.+..|.|++.|.-
T Consensus         1 ~~~L~C~a~gf~P~-~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~--s~L~v~~~~~-~~~~~~tC~V~H~~   71 (75)
T smart00407        1 KATLVCLVSGFYPP-DITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLS--SYLTVSASTW-ESGDTYTCQVTHEG   71 (75)
T ss_pred             CeEEEEEEEeEeCC-CCEEEEEECCEECCCCEEECceEECCCCCEEEE--EEEEEccccC-CCCCEEEEEEEEcC
Confidence            47899999887333 2468999998654211       0123334331  2344433344 44569999999863

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.54  E-value=0.00014  Score=50.22  Aligned_cols=68  Identities=16%  Similarity=0.309  Sum_probs=43.6

Q ss_pred             EeCCeEEEEeeCCCCCCCceeEeEEeecceeeeccc-------CCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT-------DTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~-------~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      ..|+.+.|.|.+.++-+.. ..++|++|+..+....       +.++.|.+.  ..|.|.--.+ |.|..|.|++.|.-
T Consensus        15 ~~~~~~~L~C~~~gfyP~~-i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~--s~L~v~~~~w-~~~~~~sC~V~H~~   89 (100)
T cd07699          15 EKSGKATLVCLINDFYPGF-ATVQWKVDGATVSSGVQTSTTEQQSDNTYSLS--SYLTLTKSDW-NKHKVYTCEVTHEG   89 (100)
T ss_pred             ccCCCcEEEEEEEeEECCC-CEEEEEECCEECcccEeccccEECCCCCEEEE--EEEEEcHHHh-CCCCeEEEEEEecC
Confidence            3578899999998874433 4589999997663210       123444442  3444444444 34569999999973

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.53  E-value=0.00021  Score=49.37  Aligned_cols=68  Identities=13%  Similarity=0.293  Sum_probs=41.7

Q ss_pred             EEeCCeEEEEeeCCCC-CCCceeEeEEeecc-eeeecc-----cCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          31 VILGNTAVLRCQIPSY-MSEYIIVTSWIQDD-VNIYLN-----TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        31 V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~-~~i~~~-----~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      +..|..|.|.|.+.++ -++ ...++|++|+ ..+...     .+.++-|.+.  ..|-|..-.| +.|..|.|.+.|.
T Consensus        11 l~~~~~~tLtC~v~gf~yP~-~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~--s~l~v~~~~w-~~g~~ysC~V~H~   85 (96)
T cd07696          11 LLLTKSVKLTCLVTNLTSPE-GVNVTWTRGSGEPVKASIQPPESHNNATLSVT--STLNVSTDDW-ISGDTFQCKVTHP   85 (96)
T ss_pred             hccCCCeEEEEEEeCCCCCC-CcEEEEEECCeEeeeEEecccccCCCCCEEEE--EEEEeCHHHc-cCCCcEEEEEECC
Confidence            4569999999999988 333 2468999986 333111     1223344442  3344443333 2445999999997

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.52  E-value=0.00032  Score=48.38  Aligned_cols=66  Identities=21%  Similarity=0.464  Sum_probs=41.6

Q ss_pred             EeCCeEEEEeeCCCC-CCCceeEeEEeecceeeecccCCCceEEEccCccEEEe---ccCCCCCCcceEEEeecc
Q psy5694          32 ILGNTAVLRCQIPSY-MSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVF---NATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        32 ~~GntAvL~C~vp~~-~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~---nv~~~D~g~~Y~C~a~N~  102 (129)
                      -.|+.++|.|.+.++ |++  ..++|++|+..+. ... .+.+.-..+|..++.   .+.+++. ..|.|++.|.
T Consensus        13 ~~g~~~~L~C~a~gFyP~~--i~v~W~~dg~~~~-~~~-~~~~~p~~d~tyq~~s~l~~~~~~~-~~ysC~V~H~   82 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPD--IEIRLLKNGVKIP-KVE-QSDLSFSKDWTFYLLKSTEFTPTKG-DEYACRVRHN   82 (93)
T ss_pred             cCCCceEEEEEEEEEeCCC--CEEEEEECCEECC-CcE-ECcEEECCCCCEEEEEEEEECCCCC-CeEEEEEEEC
Confidence            347788999999886 444  4579999997763 211 111222233444442   3456665 4999999986

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.52  E-value=0.00038  Score=45.91  Aligned_cols=64  Identities=23%  Similarity=0.534  Sum_probs=43.4

Q ss_pred             eCCeEEEEeeCCCCCCCceeEeEEeecceeeecc------c-CCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN------T-DTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~------~-~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      .|+.+.|.|.+.++-+.- ..++|++|+..+...      . +.++.|.+.  ..|.|.   +.+ +..|+|++.|.-
T Consensus         7 ~~~~~~L~C~v~~f~P~~-i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~--s~l~v~---~~~-~~~ysC~V~H~~   77 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKD-ITVTWLKNGKEVTEGVETTPPPPNSDGTYSVT--SSLTVT---WNS-GDEYSCRVTHES   77 (83)
T ss_dssp             STSEEEEEEEEEEEBSST-EEEEEEETTEEETTTEEEEEEEEETTSEEEEE--EEEEEE---TTT-TGGEEEEEEETT
T ss_pred             CCCCEEEEEEEEEEECCC-cEEEEEeccceeeeeeeecccccccccceeee--EEEEec---CCC-CCEEEEEEEECC
Confidence            389999999998874443 368999998665211      1 245666654  345555   544 459999999874

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.43  E-value=0.0003  Score=48.98  Aligned_cols=67  Identities=19%  Similarity=0.381  Sum_probs=42.1

Q ss_pred             EeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc--------cC--CCceEEEccCccEEEeccCCCCCCcceEEEeec
Q psy5694          32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN--------TD--TGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVN  101 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~--------~~--~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N  101 (129)
                      ..|+.|.|.|.+.++.+.. ..++|++|+..+...        .+  .++-|.+.  -.|.| +.+..+.|..|.|++.|
T Consensus        14 ~~~~~~tL~C~a~gFyP~~-i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~--s~L~v-~~~~w~~~~~ytC~V~H   89 (102)
T cd05768          14 SLQETATLTCLVKGFSPSD-IFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLY--SKLTV-SAEDWNAGDVFTCVVGH   89 (102)
T ss_pred             CcCCceEEEEEEeeEeCCC-CEEEEEECCEECCcccccccCcccccCCCCeEEEE--EEEEE-cHHHhcCCCcEEEEeEe
Confidence            4588999999999874432 457999998665311        01  12444442  23444 33333445699999999


Q ss_pred             c
Q psy5694         102 K  102 (129)
Q Consensus       102 ~  102 (129)
                      .
T Consensus        90 ~   90 (102)
T cd05768          90 E   90 (102)
T ss_pred             C
Confidence            7

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.35  E-value=0.00042  Score=49.66  Aligned_cols=68  Identities=13%  Similarity=0.189  Sum_probs=44.9

Q ss_pred             eCCeEEEEeeCCCCCCCceeEeEEeecceeeeccc--------CCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT--------DTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~--------~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      .++.+.|.|.+.++-++- ..++|++|+..|....        +.++-|.+.  -.|.|.-..+.|.|..|.|++.|.-
T Consensus        17 ~~~~~tL~Cla~gFyP~~-I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~--S~L~v~~~~w~~~~~~ytC~V~H~g   92 (115)
T cd05769          17 NKRKATLVCLATGFYPDH-VSLSWKVNGKEVTDGVATDPQALRENTSTYSIS--SRLRVSATEWFNPRNTFTCIVQFYG   92 (115)
T ss_pred             cCCCcEEEEEEEeEeCCC-cEEEEEECCEECCCCcccccceecCCCCeEEEE--EEEEEChHHhccCCCeEEEEEEEeC
Confidence            577899999998875442 4679999997663210        011345442  3456565555565679999999874

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.34  E-value=0.00067  Score=47.86  Aligned_cols=71  Identities=15%  Similarity=0.181  Sum_probs=43.3

Q ss_pred             EEeCCeEEEEeeCCCC-CCCceeEeEEeecceeeecccCCC---ceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          31 VILGNTAVLRCQIPSY-MSEYIIVTSWIQDDVNIYLNTDTG---GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        31 V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~~~i~~~~~~~---~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      ...|+.+.++|.+++. |.+ ...+.|++.+..+....-.+   .+=..-++-++.+ .++.+|.|+.|+|+|.=.+
T Consensus        12 l~~G~~vtv~C~v~~v~P~~-~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtf-tptreD~g~~fsC~A~L~l   86 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFD-RLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTF-TPTIEDIGKVLVCRAKLHI   86 (99)
T ss_pred             ccCCceEEEEEEecCcccCC-ceEEEEecCcceecccccccccccCCCCCcceeEEE-ecchhhCCcEEEEEEEEee
Confidence            4679999999999865 444 35689988776553221000   0000111123333 3469999999999998444

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.31  E-value=0.001  Score=45.56  Aligned_cols=65  Identities=18%  Similarity=0.355  Sum_probs=41.1

Q ss_pred             EeCCeEEEEeeCCCCCCCceeEeEEeecceeeeccc-------CCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT-------DTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~-------~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      ..|+.+.|.|.+.++-+.- ..++|++|+..+....       +.++.|.+.  -.|   .+..++ |..|.|++.|.-
T Consensus        12 ~~~~~~~L~C~~~gFyP~~-i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~--s~L---~~~~~~-~~~ysC~V~H~~   83 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPE-ITVKWFKNGQEETEGVVSTELIPNGDWTYQIL--VML---ETTPSR-GDTYTCVVEHSS   83 (94)
T ss_pred             cCCCCeEEEEEEeeecCCC-CEEEEEECCeecCCCceecceEECCCCcEEEE--EEE---EEcCCC-CCEEEEEEEeCC
Confidence            4589999999999975442 4579999997764310       112334332  113   234444 459999999973

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.26  E-value=0.0013  Score=44.37  Aligned_cols=67  Identities=18%  Similarity=0.428  Sum_probs=39.6

Q ss_pred             CCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEE---EeccCCCCCCcceEEEeeccc
Q psy5694          34 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLY---VFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        34 GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~---I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      |+.+.|.|.+.++.+.- ..++|++++..+.... ....+....+|...   .-.|..+|. +.|.|++.|.-
T Consensus        14 ~~~~~L~C~a~gF~P~~-i~v~W~~~g~~~~~~~-~~~~~~~~~d~ty~~~s~l~v~~~~~-~~ytC~V~H~~   83 (93)
T cd07698          14 DGSLTLSCHATGFYPRD-IEVTWLRDGEDSVDDV-ESGEILPNGDGTYQLWVTLEVPPEDK-ARYSCRVEHSG   83 (93)
T ss_pred             CCcEEEEEEEEEEeCCC-cEEEEEECCEECcccc-cccceEECCCCeEEEEEEEEECCCCC-CEEEEEEEeCC
Confidence            78899999999864331 3689999985332110 11222222333322   233455565 59999999873

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.23  E-value=0.00088  Score=46.09  Aligned_cols=66  Identities=23%  Similarity=0.411  Sum_probs=40.5

Q ss_pred             eCCeEEEEeeCCCCCCCceeEeEEeecceeeecc-------cCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~-------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      .++.+.|.|.+.++-+.- ..++|++|+..+...       .+.++.|.+.  -.|.|..-.+. .|..|.|++.|.
T Consensus        13 ~~~~~~L~C~a~gFyP~~-I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~--S~L~v~~~~w~-~~~~ytC~V~H~   85 (94)
T cd05847          13 TSETIQLLCLISGYTPGT-IEVEWLVDGQVATLVAASTAPQKEEGSTFSTT--SELNVTQEDWK-SGKTYTCKVTHQ   85 (94)
T ss_pred             CCCCEEEEEEEEeEECCC-CEEEEEECCEECcCceeecccEECCCCcEEEE--EEEEEchHHhc-CCCeEEEEEEEC
Confidence            467799999999874442 457999998665211       1123344331  23444433333 446999999987

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>KOG1480|consensus

Probab=97.05  E-value=0.00015  Score=66.37  Aligned_cols=81  Identities=20%  Similarity=0.314  Sum_probs=66.8

Q ss_pred             EEeeeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcce
Q psy5694          16 VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSY   95 (129)
Q Consensus        16 Vv~q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y   95 (129)
                      +++-.|+-.+.-. .|-.+.+..|.|+.|...+  ...+.|++++..+.|    +........+.|.|.-+..+|.| .|
T Consensus       127 y~rk~f~~~p~~q-~V~~~s~~~l~cr~pe~~p--aae~~w~k~e~~~~p----d~n~~~~~d~~li~~~arlsd~~-ny  198 (909)
T KOG1480|consen  127 YLRKHFEQSPVGQ-EVQEETTLQLPCRPPEGDP--KAEVEWLKNEVVIDP----DANVIRASDHNLIISQARLSDSG-NY  198 (909)
T ss_pred             HHHHhhccChhhh-eecccccccccccCcccch--hhhhhccccCCCCCc----cccchhhhcCCccccchhhhhcc-cc
Confidence            3445567777777 8899999999999987654  467899999977754    56676778999999999999998 99


Q ss_pred             EEEeecccC
Q psy5694          96 RCRTVNKIT  104 (129)
Q Consensus        96 ~C~a~N~lt  104 (129)
                      +|+|.|...
T Consensus       199 tc~a~ni~~  207 (909)
T KOG1480|consen  199 TCEATNIVA  207 (909)
T ss_pred             eeeeehhhc
Confidence            999999973

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=97.05  E-value=0.00055  Score=49.12  Aligned_cols=38  Identities=18%  Similarity=0.174  Sum_probs=29.0

Q ss_pred             cEEEeccCCCCCCcceEEEeecccCCeEEecccceEEEEecCC
Q psy5694          80 DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        80 ~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      .|.|.||+.+|+| .|.|.+.|.....   +. ..+|.|..|+
T Consensus         2 sL~i~~v~~~D~G-~Y~C~~~~~~~~~---~~-~~~l~v~~~P   39 (139)
T cd05771           2 SLTLPGLTVHDEG-TYICSVSTPPHQA---QQ-IIQLSVSEPP   39 (139)
T ss_pred             eEEECCCCHHHCE-EEEEEEEccCcce---ee-EEEEEEecCC
Confidence            5899999999997 9999999875332   33 4577777654

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.00  E-value=0.0031  Score=41.51  Aligned_cols=68  Identities=19%  Similarity=0.327  Sum_probs=44.2

Q ss_pred             CCeEEEEeeCCCCCCCceeEeEEeecceeeecc------cCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCe
Q psy5694          34 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGE  106 (129)
Q Consensus        34 GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge  106 (129)
                      |..+.|.|...++-+  .+.++|..++..+...      ...++.|.+.  -.|.+ .++++|.++.++|++.|.....
T Consensus        14 ~~~~~~~C~s~~~~P--~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~--S~l~~-~~~~~~~~~~~~C~~~~~~~~~   87 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYP--PPQITWYLDGGPVVASNTTQSSSPDNGLFTVS--STLTL-TPTREDHGKTLTCRASHPALSQ   87 (89)
T ss_dssp             TEEEEEEEEEEEEBS---EEEEEEETTCEECEEEEEEEEETTTTTEEEE--EEEEE-ETTGGGTTEEEEEEEEETTCCE
T ss_pred             ceEEEEEEEeCCeEC--CeEEEEEECCCceeeeeeeeeeccCCCcceEE--EEEEE-EcChHHCCeEEEEEEECCccCC
Confidence            569999998766543  3789999998554100      1123334332  24554 4677888899999999986443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=96.99  E-value=0.0022  Score=44.23  Aligned_cols=63  Identities=16%  Similarity=0.370  Sum_probs=39.6

Q ss_pred             eCCeEEEEeeCCCCCCCceeEeEEeecceeeecc-------cCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~-------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      .|..+.|.|.+.++-+.- ..++|++|+..+...       ...|+.|.+.  -.|.|.   .++ |..|.|++.|.
T Consensus        14 ~~~~~tL~C~a~gFyP~~-I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~--s~L~v~---~~~-~~~ytC~V~H~   83 (94)
T cd05767          14 LGEPNTLICFVDNFFPPV-LNVTWLKNGVPVTDGVSETRYYPRQDLSFQKF--SYLNFT---PEE-GDIYSCIVEHW   83 (94)
T ss_pred             CCCCeEEEEEEEEEECCc-CEEEEEECCeEccCceEEeeeEeCCCCcEEEE--EEEEEE---CCC-CCeEEEEEEeC
Confidence            366689999999874432 457999999766321       0223445442  224433   334 45999999986

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.97  E-value=0.0023  Score=44.90  Aligned_cols=69  Identities=20%  Similarity=0.336  Sum_probs=44.6

Q ss_pred             EEeCCeEEEEeeCCCCC-CCceeEeEEeeccee--e--ecccCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          31 VILGNTAVLRCQIPSYM-SEYIIVTSWIQDDVN--I--YLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        31 V~~GntAvL~C~vp~~~-~~~v~v~sW~~d~~~--i--~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      ...|..|.|.|.+.++- ++.+ .++|.+|+..  .  .+..+.++-|.+.  ..|-|.--. ...|..|.|++.|.-
T Consensus        16 l~~~~~atLtClV~~f~~P~~i-~V~W~~~g~~~~~~t~~~~~~dgTys~~--S~L~v~~~~-W~~g~~ytC~V~H~~   89 (99)
T cd04986          16 LLLGSSASLTCTLSGLRDPEGA-VFTWTPSGGKEAVQTSAESDQCGCYSVS--SVLPGCAEE-WNKGEPFACTVTHPE   89 (99)
T ss_pred             hCcCCccEEEEEEeccCCCCCe-EEEEEECCccCcEEcCcccCCCCCEEEE--EEEEeCHHH-hcCCCeEEEEEECCC
Confidence            34788999999998865 4434 5899999732  1  1112335666653  556655323 344568999999973

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.96  E-value=0.0014  Score=45.12  Aligned_cols=67  Identities=18%  Similarity=0.348  Sum_probs=40.4

Q ss_pred             EeCCeEEEEeeCCCCCCCceeEeEEeecceeeec-----c-cCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYL-----N-TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~-----~-~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      +.++.+.|.|.+.++.+. ...++|++|+.....     . ...++.|.+.  -.|.|..-.+ +.+..|.|++.|.
T Consensus        14 ~~~~~~~L~C~a~gFyP~-~i~vtW~k~g~~~~~~~~~~~~~~~dgty~~~--s~L~v~~~~w-~~~~~ytC~V~H~   86 (95)
T cd04985          14 SSSDSVTLGCLATGFLPE-PVTFTWNSGSNSTSGVKTYPAVLQSGGLYTAS--SQLTVPASEW-KGKESFYCKVEHP   86 (95)
T ss_pred             cCCCcEEEEEEEeeEECC-CcEEEEeECCEECCCcEECCCEeCCCCCEEEE--EEEEEeHHHc-CCCCcEEEEEEeC
Confidence            357789999999987554 245799999965210     0 0013445442  2233333333 2446999999996

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=96.57  E-value=0.015  Score=40.23  Aligned_cols=63  Identities=17%  Similarity=0.236  Sum_probs=39.3

Q ss_pred             eEEEEeeCCCCCCCceeEeEEeecc-eeee--cccCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          36 TAVLRCQIPSYMSEYIIVTSWIQDD-VNIY--LNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        36 tAvL~C~vp~~~~~~v~v~sW~~d~-~~i~--~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      ..++.|...++-+  .+.++|+++- ..+.  .....+++|.+.  ..|.+ -.+.+|.|+.|+|++.|.-
T Consensus        17 ~~va~C~s~~gkP--aa~IsW~~~~~g~~~~~~~~~~~gt~tv~--S~l~~-~P~~~d~Gk~ltC~v~h~a   82 (95)
T cd07703          17 VPVAKCVSANGRP--PARISWSSTLGGNANTTSKENGDGTVTVT--SEYSL-VPTPEANGKEVTCKVEHET   82 (95)
T ss_pred             cEEEEEEcCCCCC--CcEEEEEcCCCCCeeEEEEeCCCCCEEEE--EEEEE-ecCHHHCCCEEEEEEeCcc
Confidence            4689999876633  3789999983 1110  001123444443  23333 4677888899999999974

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=96.38  E-value=0.013  Score=40.42  Aligned_cols=63  Identities=13%  Similarity=0.141  Sum_probs=38.1

Q ss_pred             eEEEEeeCCCCCCCceeEeEEeecc-eeee--cccCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          36 TAVLRCQIPSYMSEYIIVTSWIQDD-VNIY--LNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        36 tAvL~C~vp~~~~~~v~v~sW~~d~-~~i~--~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      ..++.|...++-+  .+.++|.++- ..+.  .....++.|.+.  -.|.+ ..+.+|.|+.|+|++.|..
T Consensus        17 ~~va~C~s~~gkP--~a~ItW~~~~~~~~~~~~~~~~~g~~tv~--S~l~~-~p~~~d~G~~~tC~v~h~~   82 (95)
T cd05719          17 VTVATCVSANGKP--PATISWETTLGGEAETQSKENPNGTVTVT--SEYRL-VPSREANGKELTCVVSHPT   82 (95)
T ss_pred             cEEEEEECCCCcC--CCEEEEEeCCCCcceeEeecCCCCCEEEE--EEEEE-ecCHHHCCCEEEEEEeCcc
Confidence            4578999965533  3789999972 1110  001112233332  23444 4678888999999999975

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=96.15  E-value=0.016  Score=37.93  Aligned_cols=52  Identities=19%  Similarity=0.388  Sum_probs=33.9

Q ss_pred             EeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      +.|.+++|.|-.-   .+   .+.|.+++..+.    ..+.       .++..|-. ++.| .|+|.+.+.
T Consensus         5 isGTtVtlTCP~~---~~---~i~W~~n~~~~~----g~~~-------~~~~~~~~-e~~G-~Y~C~~~~~   56 (65)
T cd07692           5 ISGTTVTVTCPLS---GD---DIKWKKNDQVSQ----GSDE-------KYLSLNHF-SSSG-YYHCTADNA   56 (65)
T ss_pred             EeccEEEEECCCC---CC---CceEEeCCccCC----CCCc-------eEEeeccC-CCCc-eEEEEeCCC
Confidence            6799999999632   12   289999985442    1111       23334545 7776 999999754

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=96.11  E-value=0.0072  Score=49.38  Aligned_cols=47  Identities=17%  Similarity=0.176  Sum_probs=39.8

Q ss_pred             eEeEEeecc-eeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          52 IVTSWIQDD-VNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        52 ~v~sW~~d~-~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      |.-.|...+ ..|.    ..+++.|.++|.|.+.|.++++.| .|.|....+.
T Consensus        13 P~y~W~GP~g~~l~----gn~~~nIT~TG~L~~~~F~esmSG-~YTCtLsYk~   60 (271)
T PF07354_consen   13 PTYLWTGPNGKPLS----GNSYVNITETGKLMFKNFQESMSG-SYTCTLSYKP   60 (271)
T ss_pred             CceEEECCCCcccC----CCCeEEEccCceEEeeccccccCC-ceEEEEEEEe
Confidence            457999976 6663    346888999999999999999998 9999999887

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=95.78  E-value=0.033  Score=38.92  Aligned_cols=70  Identities=13%  Similarity=0.104  Sum_probs=45.4

Q ss_pred             EEEeCCeEEE-EeeCCCCCCCceeEeEEeecc-eee--ecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccC
Q psy5694          30 NVILGNTAVL-RCQIPSYMSEYIIVTSWIQDD-VNI--YLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT  104 (129)
Q Consensus        30 ~V~~GntAvL-~C~vp~~~~~~v~v~sW~~d~-~~i--~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~lt  104 (129)
                      .+..||...+ .|....+-+  .+.++|..+. ...  ......++.+.+..  .|.+ -...+|.|+.+.|++.|.-.
T Consensus        12 ~~~~g~~~~vA~C~sa~gkP--aa~IsW~~~~~G~~~~~~~~~~ngT~TV~S--~~~l-~p~r~d~G~~vtC~V~H~al   85 (97)
T cd07704          12 LIDGGNGTTLAACCAAEGRP--AADVTWETNVYGTSESHSQEHPNGTTTVTS--EYIW-VPSRHANGHPLTCVVSHPAL   85 (97)
T ss_pred             EeecCcceeEEEEEccCCcc--CCEeEEeCCCCCccceeeecCCCCCEEEEE--EEEE-EeCHHHCCcEEEEEEeCccc
Confidence            4567888888 999877643  3789999873 111  00112345555542  4444 34666777899999999853

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=94.80  E-value=0.065  Score=45.20  Aligned_cols=65  Identities=12%  Similarity=0.222  Sum_probs=37.2

Q ss_pred             eEEEEeeCCCCCCCceeEeEEeec---------c---eeeeccc--CCCc---eEEEccCcc---EEEe---ccCCCCCC
Q psy5694          36 TAVLRCQIPSYMSEYIIVTSWIQD---------D---VNIYLNT--DTGG---KYVVLSSGD---LYVF---NATPNDGY   92 (129)
Q Consensus        36 tAvL~C~vp~~~~~~v~v~sW~~d---------~---~~i~~~~--~~~~---ry~vlpsG~---L~I~---nv~~~D~g   92 (129)
                      .+.|+|++.++-|.- ..++|++|         +   ..+.++.  +.++   -..++|+|+   .++.   .|..+|..
T Consensus       216 ~~tL~C~A~GFYP~~-I~v~W~kd~~~~~~~~~g~e~~e~~~n~d~e~ge~~~~~~~~pn~DggTfQ~~~~v~v~~~~~~  294 (338)
T PHA02865        216 NTTLFCTFDSHYPSS-VAAKWYNSEDFAPEYRYGRYYPELGRDTDYEPGEPGFPTNTKKDNDKNTFSSTPSVRVPTDMSN  294 (338)
T ss_pred             CceEEEEEEeEeCCc-cEEEEEecccccccccCCccccccccCCCccccccccccceeeCCCCCeeEEEEEEEeCCCCCC
Confidence            468999999874332 45799999         4   2222210  0000   122444333   3332   45566664


Q ss_pred             cceEEEeecc
Q psy5694          93 KSYRCRTVNK  102 (129)
Q Consensus        93 ~~Y~C~a~N~  102 (129)
                       .|.|++.|.
T Consensus       295 -~Y~C~V~Hs  303 (338)
T PHA02865        295 -QIVCVVFHS  303 (338)
T ss_pred             -CcEEEEEeC
Confidence             899999986

>PHA02633 hypothetical protein; Provisional

Probab=94.69  E-value=0.032  Score=36.38  Aligned_cols=40  Identities=25%  Similarity=0.349  Sum_probs=29.1

Q ss_pred             cCccEEEeccCCCCCCcceEEEeecccCCeEEecccceEEEEecC
Q psy5694          77 SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        77 psG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      .+++|.|-++..+|+| .|.|+.+|.-  --..+  ...|+|.+.
T Consensus        16 ~~~nLwilpa~~sDSG-iYiC~~rn~t--~c~~~--si~l~V~~~   55 (63)
T PHA02633         16 NCNNMLILNPTQSDSG-IYMCITKNET--YSDMM--KFDLCICLR   55 (63)
T ss_pred             ccccEEEeccccccCc-EEEEEEcCCC--eeEEE--EEEEEEeec
Confidence            5678999999999998 9999999862  22222  346666543

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=94.56  E-value=0.22  Score=34.41  Aligned_cols=63  Identities=17%  Similarity=0.253  Sum_probs=45.5

Q ss_pred             eeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEE-ccCccEEEeccCCCCCCcceEEEee
Q psy5694          27 YEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV-LSSGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        27 ~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~v-lpsG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      +. .++.|++..|.|..|+...+ .+.+.|..-+..+        .... -....|.+.+++..|.| ...|...
T Consensus         8 ~~-~lL~G~sLtLtl~~~s~s~p-~~~i~w~~P~n~~--------~~~~~~~~ktL~~~qv~~qdSG-~WtC~V~   71 (88)
T cd07694           8 SD-HVLSGTNLTLTLHGSSNSLP-AFKVEWRGPGNKS--------KQILNQDKKTLNLVQLGPNDSG-TWDCIVS   71 (88)
T ss_pred             CC-eeecCCcEEEEEecCCCCCC-CccEEEeCCCCcc--------ceeccCCccEEEeceeCcccCC-EEEEEEE
Confidence            35 78999999999999775321 2478998854111        1111 23456999999999998 9999996

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=92.50  E-value=0.3  Score=35.98  Aligned_cols=72  Identities=17%  Similarity=0.308  Sum_probs=41.4

Q ss_pred             EEEeCCeEEEEeeCCCCCCC--ceeEeEEeecceeeecccCCCceEE----------EccCcc--EEEeccCCCCCCcce
Q psy5694          30 NVILGNTAVLRCQIPSYMSE--YIIVTSWIQDDVNIYLNTDTGGKYV----------VLSSGD--LYVFNATPNDGYKSY   95 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~--~v~v~sW~~d~~~i~~~~~~~~ry~----------vlpsG~--L~I~nv~~~D~g~~Y   95 (129)
                      +..=.++++|+|.+......  ..-.+.|..++..|........+..          -+-.|+  |.+...+.- .| .|
T Consensus        23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~G-nY  100 (130)
T PF08204_consen   23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EG-NY  100 (130)
T ss_dssp             E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--E-EE
T ss_pred             EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-cc-ce
Confidence            56778999999999642211  1245899998866643312222221          134566  888886666 44 99


Q ss_pred             EEEeeccc
Q psy5694          96 RCRTVNKI  103 (129)
Q Consensus        96 ~C~a~N~l  103 (129)
                      +|-+.+..
T Consensus       101 TCeVt~~~  108 (130)
T PF08204_consen  101 TCEVTELS  108 (130)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEecC
Confidence            99998654

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=92.24  E-value=0.58  Score=33.81  Aligned_cols=68  Identities=13%  Similarity=0.180  Sum_probs=44.2

Q ss_pred             EEEeCCeEEEEeeCCC--CCCCceeEeEEeecc-ee---eecc-------cCCCceEEEc--cCc---cEEEeccCCCCC
Q psy5694          30 NVILGNTAVLRCQIPS--YMSEYIIVTSWIQDD-VN---IYLN-------TDTGGKYVVL--SSG---DLYVFNATPNDG   91 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~--~~~~~v~v~sW~~d~-~~---i~~~-------~~~~~ry~vl--psG---~L~I~nv~~~D~   91 (129)
                      .|..|+++.|.|...+  ...++  .++|+|.. ..   +...       ....+|+.+.  .+.   .|.|.+++.+|.
T Consensus         9 lv~p~~sv~LsC~~sg~~~s~e~--~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DT   86 (115)
T cd05721           9 LASSNGAASLVCEYTYNGFSKEF--RASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQT   86 (115)
T ss_pred             EEcCCCCEEEEEEecCCccccEE--EEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHC
Confidence            7788999999999844  34333  57898853 11   1110       0123455443  222   399999999999


Q ss_pred             CcceEEEee
Q psy5694          92 YKSYRCRTV  100 (129)
Q Consensus        92 g~~Y~C~a~  100 (129)
                      . .|.|.-.
T Consensus        87 a-~Y~Ca~e   94 (115)
T cd05721          87 D-IYFCKIE   94 (115)
T ss_pred             e-EEEEEee
Confidence            6 9999653

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>KOG4597|consensus

Probab=92.24  E-value=0.28  Score=43.40  Aligned_cols=76  Identities=21%  Similarity=0.120  Sum_probs=56.9

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEee---ccee-eecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCC
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQ---DDVN-IYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITG  105 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~---d~~~-i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltg  105 (129)
                      .|-.|.++-+.|-+-+.+.   +++.|.|   ++.+ +-+....-++-.+...+.|.|-|..++|+| -|.|.++|.. |
T Consensus       207 ~vg~wetcS~tCg~~G~q~---r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~-w~tCs~rcg~-g  281 (560)
T KOG4597|consen  207 FVGDWETCSSTCGVQGRQY---RVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAG-WYTCSARCGA-G  281 (560)
T ss_pred             hcccchhhcccccccCCcC---ceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCC-ceeecccccc-c
Confidence            4677899999999877663   6789977   3322 211112346667778999999999999998 9999999987 6


Q ss_pred             eEEec
Q psy5694         106 ESQAS  110 (129)
Q Consensus       106 e~k~S  110 (129)
                      -.+.+
T Consensus       282 ~~~rd  286 (560)
T KOG4597|consen  282 FLRRD  286 (560)
T ss_pred             eeecc
Confidence            65554

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=90.65  E-value=0.44  Score=31.59  Aligned_cols=49  Identities=16%  Similarity=0.307  Sum_probs=29.7

Q ss_pred             CCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeec
Q psy5694          34 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVN  101 (129)
Q Consensus        34 GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N  101 (129)
                      ...++|.|..-       ..++|+++...+..    .       +-.|-+..+. .|..|.|+|.+.+
T Consensus         6 ~~~V~L~C~~~-------tsi~W~kG~~~~~~----~-------~~tlnLGs~~-~DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNGA-------TNITWKKGKEILEV----S-------NTLLDLGSRI-NDPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecCC-------CcEEEecCcccccc----c-------ccEEeccCcc-cCCCcceEecCcc
Confidence            35688999851       34899994333311    1       2233333333 4666699999987

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PHA02982 hypothetical protein; Provisional

Probab=89.34  E-value=1.2  Score=35.90  Aligned_cols=70  Identities=16%  Similarity=0.305  Sum_probs=49.3

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecc-eeeecccC----C----------CceEEEcc---CccEEEeccCCCCC
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTD----T----------GGKYVVLS---SGDLYVFNATPNDG   91 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-~~i~~~~~----~----------~~ry~vlp---sG~L~I~nv~~~D~   91 (129)
                      .+..|+.+.|.|..|..  +-+...-|.+++ .-|.....    .          ..+|.+.-   +-.|.|.++..+..
T Consensus        35 ~a~vd~~V~L~C~~~~~--~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~  112 (251)
T PHA02982         35 NATVDQEVKLQCLFKDA--DEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL  112 (251)
T ss_pred             hccCCCcEEEEecCCCc--chhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence            56779999999998763  336677999977 44431100    0          23454433   44599999999999


Q ss_pred             CcceEEEeecc
Q psy5694          92 YKSYRCRTVNK  102 (129)
Q Consensus        92 g~~Y~C~a~N~  102 (129)
                      | =|.|.++..
T Consensus       113 G-CYtc~~ks~  122 (251)
T PHA02982        113 G-CFTCEAKDA  122 (251)
T ss_pred             C-ceEEEEecC
Confidence            7 999999864

>KOG3515|consensus

Probab=89.03  E-value=0.32  Score=44.87  Aligned_cols=53  Identities=23%  Similarity=0.178  Sum_probs=44.8

Q ss_pred             eeEeEEeecceeeecccCCCceEEEccCccEE-EeccCCCCCCcceEEEeecccCCe
Q psy5694          51 IIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLY-VFNATPNDGYKSYRCRTVNKITGE  106 (129)
Q Consensus        51 v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~-I~nv~~~D~g~~Y~C~a~N~ltge  106 (129)
                      .+.+.|.++...+.+.  .++++.+.++|-|. +.||+..|.| .|.|.|.|..+|.
T Consensus       431 ~~~~~w~~~~~~~~~~--~g~~~~v~~~~~~~s~~~v~~~d~g-~y~~tatns~gg~  484 (741)
T KOG3515|consen  431 ERTFYWTFRLYKLSQV--DGGVVRVGAGAGLGSGVNVSRSDGG-SYGLTATNSPGGA  484 (741)
T ss_pred             ccchhheecceecccc--cCceEEeeccccccccceeeeccCC-cceeeeccCCCce
Confidence            3678999998777653  57788898888888 9999999998 9999999998665

>PHA03052 Hypothetical protein; Provisional

Probab=88.97  E-value=1.4  Score=29.23  Aligned_cols=48  Identities=15%  Similarity=0.252  Sum_probs=33.8

Q ss_pred             eeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc-cCCCceEEE
Q psy5694          28 EHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-TDTGGKYVV   75 (129)
Q Consensus        28 ~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~-~~~~~ry~v   75 (129)
                      .+.|-.|..+.|.|++.=.++-..+.+-|.-++..+... ...++|..+
T Consensus         6 ~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~~d~~g~gRI~~   54 (69)
T PHA03052          6 GIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEEDDDDGDGRISI   54 (69)
T ss_pred             cEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEeccccCCCcceEe
Confidence            347889999999999965555557889999999776321 134555543

>KOG3515|consensus

Probab=85.19  E-value=1.2  Score=41.26  Aligned_cols=67  Identities=24%  Similarity=0.457  Sum_probs=48.9

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCe
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGE  106 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge  106 (129)
                      .+..|..+-|.|.+.+.+++  +.+.|.+++.-+.      +||....+--|.-.+. +.|.++.|.|+|.|.. |+
T Consensus        18 ~~~~g~~v~l~C~v~~~pp~--~~~eW~h~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~c~a~ns~-~~   84 (741)
T KOG3515|consen   18 GLRLGEDVPLPCRVNSNPPE--IDVEWYHSTSGEH------GRYATIADPTLVTTGD-VRDTVAELNCRAFNSV-GM   84 (741)
T ss_pred             hhccCCcceeeeecCCCCCC--cceEEEecCcccc------cccccccCCceeeecc-hhhhhhhhhhhhcccc-cC
Confidence            56789999999999998875  5789999873321      5666655555555544 4566679999999984 55

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	129
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		2e-23
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		2e-23
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		2e-23
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		6e-21

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score =  103 bits (258), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/110 (46%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Query: 16  VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDV-NIYLNTDTGGKYV 74
           VV Q YE +VN EH VI GN+AV++C IPS++++++ V SW  D+  N +   +  GKY+
Sbjct: 107 VVAQYYEADVNKEH-VIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYL 165
Query: 75  VLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGKLKS 124
           VL SG+L++    P DGYKSY+CRT +++TGE++ S  + RL IT  + S
Sbjct: 166 VLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISS 215

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score =  103 bits (258), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/110 (46%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Query: 16  VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDV-NIYLNTDTGGKYV 74
           VV Q YE +VN EH VI GN+AV++C IPS++++++ V SW  D+  N +   +  GKY+
Sbjct: 101 VVAQYYEADVNKEH-VIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYL 159
Query: 75  VLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGKLKS 124
           VL SG+L++    P DGYKSY+CRT +++TGE++ S  + RL IT  + S
Sbjct: 160 VLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISS 209

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score =  103 bits (257), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/110 (46%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Query: 16  VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDV-NIYLNTDTGGKYV 74
           VV Q YE +VN EH VI GN+AV++C IPS++++++ V SW  D+  N +   +  GKY+
Sbjct: 136 VVAQYYEADVNKEH-VIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYL 194
Query: 75  VLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGKLKS 124
           VL SG+L++    P DGYKSY+CRT +++TGE++ S  + RL IT  + S
Sbjct: 195 VLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISS 244

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 95.9 bits (237), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 76/113 (67%), Gaps = 4/113 (3%)
Query: 16  VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLN--TDTGGK 72
           VV Q YE   + E+ VI GN+ V++C+IPSY+++++ V  W+  +  N Y N   +T GK
Sbjct: 101 VVIQSYESEADNEY-VIRGNSVVMKCEIPSYVADFVFVDLWLDSEGRNYYPNNAAETDGK 159
Query: 73  YVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGKLKSL 125
           Y+VL SG+L++    P DGYKSY+CRT +++TGE++ S  + RL IT  + S+
Sbjct: 160 YLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPVGSV 212

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	129
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-21
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-19
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-06
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-06
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	7e-04
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-14
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	3e-13
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	4e-11
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	6e-11
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-10
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-08
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	9e-06
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-04
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-07
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-05
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	9e-05
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	1e-07
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-07
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	5e-04
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	2e-07
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	6e-07
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	7e-07
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	3e-06
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	4e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-06
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	8e-06
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-05
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-05
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-04
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	7e-04
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	1e-05
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	3e-05
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	4e-05
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	4e-05
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	4e-05
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	5e-05
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	6e-05
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	5e-05
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-04
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	6e-05
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	7e-05
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-04
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-04
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	4e-04
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	5e-04
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	5e-04
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	6e-04
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	7e-04
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	7e-04
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	8e-04
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	9e-04

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 86.5 bits (214), Expect = 2e-21
 Identities = 41/90 (45%), Positives = 64/90 (71%), Gaps = 1/90 (1%)

Query: 31  VILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYVVLSSGDLYVFNATPN 89
           VI GN+AV++C IPS++++++ V SW  D+  N +   +  GKY+VL SG+L++    P 
Sbjct: 115 VIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPE 174

Query: 90  DGYKSYRCRTVNKITGESQASVFQTRLSIT 119
           DGYKSY+CRT +++TGE++ S  + RL IT
Sbjct: 175 DGYKSYQCRTKHRLTGETRLSATKGRLVIT 204

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 80.8 bits (199), Expect = 4e-19
 Identities = 41/90 (45%), Positives = 64/90 (71%), Gaps = 1/90 (1%)

Query: 31  VILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYVVLSSGDLYVFNATPN 89
           VI GN+AV++C IPS++++++ V SW  D+  N +   +  GKY+VL SG+L++    P 
Sbjct: 150 VIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPE 209

Query: 90  DGYKSYRCRTVNKITGESQASVFQTRLSIT 119
           DGYKSY+CRT +++TGE++ S  + RL IT
Sbjct: 210 DGYKSYQCRTKHRLTGETRLSATKGRLVIT 239

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 7/81 (8%)

Query: 31  VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPND 90
           ++ G T ++ C +  Y  + I    W +D+  +        K  V  +G L + N   N 
Sbjct: 538 IVAGETLIVTCPVAGYPIDSI---VWERDNRAL----PINRKQKVFPNGTLIIENVERNS 590

Query: 91  GYKSYRCRTVNKITGESQASV 111
              +Y C   N+    ++ S+
Sbjct: 591 DQATYTCVAKNQEGYSARGSL 611

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 14/81 (17%), Positives = 21/81 (25%), Gaps = 4/81 (4%)

Query: 31  VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPND 90
             +G    L C +P       I   W  D   I  +       V      L +     + 
Sbjct: 631 AQVGQYLTLHCSVPGGDLPLNI--DWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASH 688

Query: 91  GYKSYRCRTVNKITGESQASV 111
               + C   N   G  Q + 
Sbjct: 689 AGN-FTCHARNLA-GHQQFTT 707

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 37.2 bits (86), Expect = 7e-04
 Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 7/85 (8%)

Query: 31  VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTD--TGGKYVVLSSGDLYVFNATP 88
              G+ A + C+   +    +   +W +   +             + +  G L+V N   
Sbjct: 726 FAQGSDAKVECKADGFPKPQV---TWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQK 782

Query: 89  NDGYKSYRCRTVNKITGESQASVFQ 113
            +    Y C  +N I G   ++V  
Sbjct: 783 TNEGY-YLCEAINGI-GSGLSAVIM 805

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 66.8 bits (163), Expect = 3e-14
 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 6/104 (5%)

Query: 16  VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV 75
              + ++       +V  G   VL C  P +  E     +WI ++   Y +     ++V 
Sbjct: 99  AYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSY--AWIFNEYPSYQD---NRRFVS 153

Query: 76  LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 119
             +G+LY+     +D   +Y C   N +T           +   
Sbjct: 154 QETGNLYIAKVEKSDV-GNYTCVVTNTVTNHKVLGPPTPLILRN 196

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 63.7 bits (155), Expect = 3e-13
 Identities = 14/78 (17%), Positives = 33/78 (42%), Gaps = 4/78 (5%)

Query: 31  VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPND 90
           +  G   +  C  P +         W+ ++   ++  D G ++V  ++G+LY+     +D
Sbjct: 113 ITEGWGVMFTCSPPPHYPALSY--RWLLNEFPNFIPAD-GRRFVSQTTGNLYIAKTEASD 169

Query: 91  GYKSYRCRTVNKITGESQ 108
              +Y C   + I   ++
Sbjct: 170 L-GNYSCFATSHIDFITK 186

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 56.8 bits (137), Expect = 4e-11
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 31  VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPND 90
           V  G   VL C  P +  + +    W+ ++  +++  D   ++V  ++G+LY+ N   +D
Sbjct: 20  VKEGKGMVLLCDPPYHFPDDLSYR-WLLNEFPVFITMD-KRRFVSQTNGNLYIANVEASD 77

Query: 91  GYKSYRCRTVNKITGESQASVFQTRLSIT 119
              +Y C   +    +S  S F   + I 
Sbjct: 78  K-GNYSCFVSSPSITKSVFSKFIPLIPIP 105

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 57.2 bits (138), Expect = 6e-11
 Identities = 17/82 (20%), Positives = 24/82 (29%), Gaps = 5/82 (6%)

Query: 31  VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPND 90
           V  G    L+C  P  +   +I   W+   +          +     +GDLY  N    D
Sbjct: 128 VQEGAPLTLQCNPPPGLPSPVI--FWMSSSMEPITQDK---RVSQGHNGDLYFSNVMLQD 182

Query: 91  GYKSYRCRTVNKITGESQASVF 112
               Y C      T   Q    
Sbjct: 183 MQTDYSCNARFHFTHTIQQKNP 204

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 55.3 bits (133), Expect = 3e-10
 Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 7/94 (7%)

Query: 31  VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDT---GGKYVVLSSGDLYVFNAT 87
            I G    L C +P+   + +I  +W +       N D      +      G+LY    T
Sbjct: 112 PIEGRPFQLDCVLPNAYPKPLI--TWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVT 169

Query: 88  PNDG--YKSYRCRTVNKITGESQASVFQTRLSIT 119
             D      Y C   N    E    V      +T
Sbjct: 170 KEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVT 203

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 49.6 bits (118), Expect = 4e-08
 Identities = 12/95 (12%), Positives = 26/95 (27%), Gaps = 13/95 (13%)

Query: 30  NVILGNTAVLRCQ-----IPSY-------MSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS 77
           NV  G   +L        +  Y       +     +  ++             G+ ++  
Sbjct: 10  NVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYP 69

Query: 78  SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVF 112
           +  L + N   ND    Y    +       +A+  
Sbjct: 70  NASLLIQNIIQNDT-GFYTLHVIKSDLVNEEATGQ 103

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 42.6 bits (100), Expect = 9e-06
 Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 8/98 (8%)

Query: 14  LPVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKY 73
           +     K  I+ N    V   +     C+  +  + Y+    W  ++ ++ ++       
Sbjct: 106 VYPELPKPSISSNNSKPVEDKDAVAFTCEPETQDATYL----WWVNNQSLPVSPRL---Q 158

Query: 74  VVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASV 111
           +   +  L +FN T ND   SY+C T N ++     SV
Sbjct: 159 LSNGNRTLTLFNVTRNDT-ASYKCETQNPVSARRSDSV 195

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 39.2 bits (91), Expect = 1e-04
 Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 20/112 (17%)

Query: 2   KMKDTFLLFFPMLPVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDV 61
           +  D+ +L     P       +N +       G    L C   S         SW  +  
Sbjct: 190 RRSDSVILNVLYGPDAPTISPLNTS----YRSGENLNLSCHAASN---PPAQYSWFVNGT 242

Query: 62  NIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQ 113
                          S+ +L++ N T N+   SY C+  N  TG ++ +V  
Sbjct: 243 ------------FQQSTQELFIPNITVNNS-GSYTCQAHNSDTGLNRTTVTT 281

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 48.3 bits (115), Expect = 1e-07
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 31  VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPND 90
             +G+T +L+C++       I    W ++  ++        + VVL SG L +    P D
Sbjct: 133 AFMGDTVLLKCEVIGDPMPTI---HWQKNQQDLNPIPGDS-RVVVLPSGALQISRLQPGD 188

Query: 91  -GYKSYRCRTVNKITGESQASVF 112
            G   YRC   N  +  +     
Sbjct: 189 SG--VYRCSARNPASTRTGNEAE 209

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 10/82 (12%)

Query: 31  VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPND 90
            I G  AVL C +  Y        +W++ +  I L      KY +L   +L + N T +D
Sbjct: 233 AIEGKDAVLECCVSGYP---PPSFTWLRGEEVIQL---RSKKYSLLGGSNLLISNVTDDD 286

Query: 91  -GYKSYRCRTVNKITGESQASV 111
            G  +Y C    K      AS 
Sbjct: 287 SG--TYTCVVTYKN-ENISASA 305

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 39.4 bits (92), Expect = 9e-05
 Identities = 12/88 (13%), Positives = 30/88 (34%), Gaps = 21/88 (23%)

Query: 31  VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFN 85
                     C +     P+         +W+++   +         + ++   +L +  
Sbjct: 324 AYESMDIEFECAVSGKPVPTV--------NWMKNGDVV----IPSDYFQIVGGSNLRILG 371

Query: 86  ATPND-GYKSYRCRTVNKITGESQASVF 112
              +D G+  Y+C   N+  G +Q+S  
Sbjct: 372 VVKSDEGF--YQCVAENEA-GNAQSSAQ 396

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 47.1 bits (112), Expect = 1e-07
 Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 18/95 (18%)

Query: 30  NVILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVF 84
               G  A + C++     P+         SW+  +  +   T +  ++ +L++ +L + 
Sbjct: 13  EFKQGEDAEVVCRVSSSPAPAV--------SWLYHNEEV--TTISDNRFAMLANNNLQIL 62

Query: 85  NATPND-GYKSYRCRTVNKITGESQASVFQTRLSI 118
           N   +D G   YRC    +  GE         +++
Sbjct: 63  NINKSDEGI--YRCEGRVEARGEIDFRDIIVIVNV 95

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 47.5 bits (113), Expect = 2e-07
 Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 18/94 (19%)

Query: 31  VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFN 85
              G  A + C++     P+         SW+  +  +   T +  ++ +L++ +L + N
Sbjct: 110 FKQGEDAEVVCRVSSSPAPAV--------SWLYHNEEV--TTISDNRFAMLANNNLQILN 159

Query: 86  ATPND-GYKSYRCRTVNKITGESQASVFQTRLSI 118
              +D G   YRC    +  GE         +++
Sbjct: 160 INKSDEGI--YRCEGRVEARGEIDFRDIIVIVNV 191

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 37.1 bits (86), Expect = 5e-04
 Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 23/97 (23%)

Query: 31  VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFN 85
              G      C+      P+         SW ++   I    +     +  S+ +L V N
Sbjct: 206 AERGEEMTFSCRASGSPEPAI--------SWFRNGKLI---EENEKYILKGSNTELTVRN 254

Query: 86  ATPND-GYKSYRCRTVNKITGESQASVFQTRLSITGK 121
              +D G   Y CR  NK  GE +       L +  +
Sbjct: 255 IINSDGGP--YVCRATNKA-GEDEKQA---FLQVFVQ 285

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 44.7 bits (106), Expect = 2e-07
 Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 20/88 (22%)

Query: 30  NVILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVF 84
            + +  TA+L+C+      P          SW+++            +  +   G L + 
Sbjct: 19  TLAVDGTALLKCKATGDPLPVI--------SWLKEGFTF---PGRDPRATIQEQGTLQIK 67

Query: 85  NATPND-GYKSYRCRTVNKITGESQASV 111
           N   +D G  +Y C   +   GE+  S 
Sbjct: 68  NLRISDTG--TYTCVATSSS-GETSWSA 92

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 45.6 bits (108), Expect = 6e-07
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 10/82 (12%)

Query: 31  VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPND 90
           V +G  AV+ CQ P    E  I  SW +D   +    D   + + +  G L +     +D
Sbjct: 123 VAVGEPAVMECQPPRGHPEPTI--SWKKDGSPL----DDKDERITIRGGKLMITYTRKSD 176

Query: 91  -GYKSYRCRTVNKITGESQASV 111
            G   Y C   N + GE ++ V
Sbjct: 177 AG--KYVCVGTNMV-GERESEV 195

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 44.0 bits (104), Expect = 7e-07
 Identities = 20/88 (22%), Positives = 29/88 (32%), Gaps = 20/88 (22%)

Query: 31  VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFN 85
           V +  T VL C       P+          W +D V +        +   L +G L +  
Sbjct: 20  VAVDGTFVLSCVATGSPVPTI--------LWRKDGVLVSTQ---DSRIKQLENGVLQIRY 68

Query: 86  ATPND-GYKSYRCRTVNKITGESQASVF 112
           A   D G   Y C       GE+  S +
Sbjct: 69  AKLGDTG--RYTCIASTPS-GEATWSAY 93

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 43.7 bits (103), Expect = 3e-06
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 10/85 (11%)

Query: 31  VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTD----TGGKYVVLSSGDLYVFNA 86
           V  G TA+L C  P  + E  +   WI+D V +            +  ++  G+L + N 
Sbjct: 120 VAKGETALLECGPPKGIPEPTL--IWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNV 177

Query: 87  TPND-GYKSYRCRTVNKITGESQAS 110
            P D G  +Y+C   N + G  ++S
Sbjct: 178 EPIDEG--NYKCIAQNLV-GTRESS 199

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 43.3 bits (102), Expect = 4e-06
 Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 18/84 (21%)

Query: 30  NVILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVF 84
               G  AV+ C +     P+          W     ++ L  D   +++VLS+  L + 
Sbjct: 111 EFKEGEDAVIVCDVVSSLPPTI--------IWKHKGRDVILKKD--VRFIVLSNNYLQIR 160

Query: 85  NATPND-GYKSYRCRTVNKITGES 107
                D G   YRC       GE 
Sbjct: 161 GIKKTDEGT--YRCEGRILARGEI 182

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.8 bits (101), Expect = 7e-06
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 6/82 (7%)

Query: 30  NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPN 89
           NV  G  A L+C+  + ++      SWI  +  +  +     +  VLS G L   N T  
Sbjct: 352 NVTEGMAAELKCRASTSLTS----VSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQ 407

Query: 90  DGYKSYRCRTVNKITGESQASV 111
           D    Y C   N + G + AS 
Sbjct: 408 DT-GMYTCMVSNSV-GNTTASA 427

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 21/86 (24%)

Query: 31  VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFN 85
           +I G  AVL C       PS         SWI+ D  +        +  VL SG L + N
Sbjct: 112 IIEGLKAVLPCTTMGNPKPSV--------SWIKGDSAL----RENSRIAVLESGSLRIHN 159

Query: 86  ATPND-GYKSYRCRTVNKITGESQAS 110
               D G   YRC   N + G + + 
Sbjct: 160 VQKEDAGQ--YRCVAKNSL-GTAYSK 182

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 37.4 bits (87), Expect = 3e-04
 Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 21/91 (23%)

Query: 30  NVILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD-LYV 83
           + ++   A   C +     P          SW ++ + I        +Y +  +G  L +
Sbjct: 18  DALVEEVATFMCAVESYPQPEI--------SWTRNKILI---KLFDTRYSIRENGQLLTI 66

Query: 84  FNATPND-GYKSYRCRTVNKITGESQASVFQ 113
            +   +D G   Y C   N + G +  S   
Sbjct: 67  LSVEDSDDG--IYCCTANNGV-GGAVESCGA 94

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 9/85 (10%)

Query: 28  EHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNAT 87
           + N+  G  A L+C+ P   S       W+  +  +  +     +  VL+ G L   +  
Sbjct: 361 DLNISEGRMAELKCRTPPMSS-----VKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVL 415

Query: 88  PND-GYKSYRCRTVNKITGESQASV 111
            +D G   Y C   N   G S AS 
Sbjct: 416 LSDTG--VYTCMVTNVA-GNSNASA 437

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 25/101 (24%), Positives = 32/101 (31%), Gaps = 21/101 (20%)

Query: 28  EHNVILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNT-DTGGKYVVLSSGDL 81
                LG +  L C       P+         SW +D   I     D         S +L
Sbjct: 205 NATANLGQSVTLVCDADGFPEPTM--------SWTKDGEPIENEEEDDEKHIFSDDSSEL 256

Query: 82  YVFNATPND-GYKSYRCRTVNKITGESQASVFQTRLSITGK 121
            + N   ND     Y C   NK  GE  AS+    L +  K
Sbjct: 257 TIRNVDKNDEAE--YVCIAENKA-GEQDASI---HLKVFAK 291

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 8/79 (10%)

Query: 31  VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPND 90
              G  AV+ C + S +   I    W     ++ L  D   +++VLS+  L +      D
Sbjct: 112 FKEGEDAVIVCDVVSSLPPTI---IWKHKGRDVILKKD--VRFIVLSNNYLQIRGIKKTD 166

Query: 91  -GYKSYRCRTVNKITGESQ 108
            G  +YRC       GE  
Sbjct: 167 EG--TYRCEGRILARGEIN 183

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 37.2 bits (86), Expect = 7e-04
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 12/97 (12%)

Query: 31  VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV---LSSGDLYVFNAT 87
           + +G +    CQ+     +  I  SW   +    L+ +     VV     S  L ++NA 
Sbjct: 14  ISVGESKFFLCQVAGDAKDKDI--SWFSPN-GEKLSPNQQRISVVWNDDDSSTLTIYNAN 70

Query: 88  PND-GYKSYRCRTVNKITGESQASVFQTRLSITGKLK 123
            +D G   Y+C    +   +S+A+V    + I  KL 
Sbjct: 71  IDDAGI--YKCVVTAEDGTQSEATV---NVKIFQKLM 102

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 40.6 bits (95), Expect = 1e-05
 Identities = 21/111 (18%), Positives = 35/111 (31%), Gaps = 15/111 (13%)

Query: 17  VKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL 76
           V     I+     + + G    ++C I S  +      +W   +  +   + T G+Y V 
Sbjct: 11  VNGPPIISSTQTQHALHGEKGQIKCFIRS--TPPPDRIAWSWKENVL--ESGTSGRYTVE 66

Query: 77  SS-------GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG 120
           +          L + N    D    Y C   N   G     +   RL   G
Sbjct: 67  TISTEEGVISTLTISNIVRADFQTIYNCTAWNSF-GSDTEII---RLKEQG 113

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 40.9 bits (95), Expect = 3e-05
 Identities = 10/108 (9%), Positives = 29/108 (26%), Gaps = 3/108 (2%)

Query: 14  LPVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT--DTGG 71
           + +     +  ++    +  G    ++C +        +    ++ D  +      +   
Sbjct: 86  VEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDAD 145

Query: 72  KYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 119
           +  + +      F     D  K   CR    I  E  +     +    
Sbjct: 146 RKSLETKSLEVTFTPVIEDIGKVLVCRAKLHI-DEMDSVPTVRQAVKE 192

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 40.5 bits (95), Expect = 4e-05
 Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 21/86 (24%)

Query: 31  VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFN 85
           + +G+T ++ C+      P+          WI++   +    D       L  G L + N
Sbjct: 122 IEVGHTVLMTCKAIGNPTPNI--------YWIKNQTKV----DMSNPRYSLKDGFLQIEN 169

Query: 86  ATPND-GYKSYRCRTVNKITGESQAS 110
           +   D G   Y C   N + G   + 
Sbjct: 170 SREEDQG--KYECVAENSM-GTEHSK 192

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 40.3 bits (94), Expect = 4e-05
 Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 12/89 (13%)

Query: 30  NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN------TDTGGKYVVLSSGDLYV 83
           +  +GN AVL C             +W +D + +  N             +  ++G+L  
Sbjct: 118 SATIGNRAVLTCSEQDGSPPSEY--TWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVF 175

Query: 84  FNATPND-GYKSYRCRTVNKITGESQASV 111
              + +D G   Y C   N   G    S 
Sbjct: 176 DPLSASDTGE--YSCEARNGY-GTPMTSN 201

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 40.3 bits (94), Expect = 4e-05
 Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 13/90 (14%)

Query: 30  NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI-------YLNTDTGGKYVVLSSGDLY 82
           +V +GN AVL C             SW +D +++                 +   SGDL 
Sbjct: 115 SVTIGNRAVLTCSEHDGSPPSEY--SWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLI 172

Query: 83  VFNATPND-GYKSYRCRTVNKITGESQASV 111
               T  D G   Y C+  N   G +  S 
Sbjct: 173 FDPVTAFDSGE--YYCQAQNGY-GTAMRSE 199

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 40.4 bits (94), Expect = 5e-05
 Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 10/82 (12%)

Query: 31  VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPND 90
              G+   L C  P           W++D   +        + V++    L V NA+  D
Sbjct: 20  FGSGDAVELSCPPPGGGPMGPT--VWVKDGTGL-----VPSERVLVGPQRLQVLNASHED 72

Query: 91  -GYKSYRCRTVNKITGESQASV 111
            G  +Y CR           SV
Sbjct: 73  SG--AYSCRQRLTQRVLCHFSV 92

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 40.0 bits (93), Expect = 6e-05
 Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 17/89 (19%)

Query: 29  HNVILGNTAVLRCQ-----IPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYV 83
             V   NT   RC       PS         SW+++          GG  +      L +
Sbjct: 133 LAVPAANTVRFRCPAAGNPTPSI--------SWLKNGREFRGEHRIGGIKLRHQQWSLVM 184

Query: 84  FNATPND-GYKSYRCRTVNKITGESQASV 111
            +  P+D G  +Y C   NK  G  + + 
Sbjct: 185 ESVVPSDRG--NYTCVVENKF-GSIRQTY 210

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 40.3 bits (94), Expect = 5e-05
 Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 17/89 (19%)

Query: 29  HNVILGNTAVLRCQ-----IPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYV 83
             V   NT   RC       PS         SW+++          GG  +      L +
Sbjct: 25  LAVPAANTVRFRCPAAGNPTPSI--------SWLKNGREFRGEHRIGGIKLRHQQWSLVM 76

Query: 84  FNATPND-GYKSYRCRTVNKITGESQASV 111
            +  P+D G  +Y C   NK  G  + + 
Sbjct: 77  ESVVPSDRG--NYTCVVENKF-GSIRQTY 102

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 12/91 (13%)

Query: 31  VILGNTAVLRCQI-----PSYM---SEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLY 82
            +LG+     C++     P         +  +    D         +     V +   L 
Sbjct: 126 AVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLR 185

Query: 83  VFNATPND-GYKSYRCRTVNKITGESQASVF 112
           + N +  D G   Y CR  N I G ++ + +
Sbjct: 186 LANVSERDGGE--YLCRATNFI-GVAEKAFW 213

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 39.9 bits (93), Expect = 6e-05
 Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 17/89 (19%)

Query: 29  HNVILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYV 83
           H V   NT   RC       P+          W+++          GG  V      L +
Sbjct: 29  HAVPAANTVKFRCPAGGNPMPTM--------RWLKNGKEFKQEHRIGGYKVRNQHWSLIM 80

Query: 84  FNATPND-GYKSYRCRTVNKITGESQASV 111
            +  P+D G  +Y C   N+  G    + 
Sbjct: 81  ESVVPSDKG--NYTCVVENEY-GSINHTY 106

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 5/82 (6%)

Query: 31  VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPND 90
            ++G    L+  I       I V  W +D   I   +D        +   L    A P +
Sbjct: 489 TVVGEEVQLQATIEGAEP--ISVA-WFKDKGEIVRESDNIWISYSENIATLQFSRAEPAN 545

Query: 91  GYKSYRCRTVNKITGESQASVF 112
             K Y C+  N+  G  +    
Sbjct: 546 AGK-YTCQIKNEA-GTQECFAT 565

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 6/81 (7%)

Query: 31  VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPND 90
             LG      C+I        +  SW +D   +  + +      + +   L +     + 
Sbjct: 113 ETLGFPVAFECRINGS-EPLQV--SWYKDGELLKDDANLQT-SFIHNVATLQILQTDQSH 168

Query: 91  GYKSYRCRTVNKITGESQASV 111
               Y C   N + G + +S 
Sbjct: 169 V-GQYNCSASNPL-GTASSSA 187

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 36.3 bits (84), Expect = 4e-04
 Identities = 20/98 (20%), Positives = 29/98 (29%), Gaps = 17/98 (17%)

Query: 20  KYEINVNYEHNVILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYV 74
             E      H V   NT   RC       P+          W+++          GG  V
Sbjct: 9   NTEKMEKRLHAVPAANTVKFRCPAGGNPMPTM--------RWLKNGKEFKQEHRIGGYKV 60

Query: 75  VLSSGDLYVFNATPND-GYKSYRCRTVNKITGESQASV 111
                 L + +  P+D G   Y C   N+  G    + 
Sbjct: 61  RNQHWSLIMESVVPSDKGN--YTCVVENEY-GSINHTY 95

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 36.4 bits (84), Expect = 5e-04
 Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 11/100 (11%)

Query: 22  EINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYV------- 74
            I      +   G + +L+C + S  ++   V  W Q D  + +     G ++       
Sbjct: 6   TIETTGNISAEKGGSIILQCHLSSTTAQVTQVN-WEQQDQLLAICNADLGWHISPSFKDR 64

Query: 75  --VLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVF 112
                   L + + T ND    Y C       G     +F
Sbjct: 65  VAPGPGLGLTLQSLTVNDT-GEYFCIYHTYPDGTYTGRIF 103

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 37.5 bits (87), Expect = 5e-04
 Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 17/78 (21%)

Query: 31  VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFN 85
           V    TA + C       P          +W +D + +  +  + G+   L SG L + +
Sbjct: 120 VERTRTATMLCAASGNPDPEI--------TWFKDFLPVDPSA-SNGRIKQLRSGALQIES 170

Query: 86  ATPND-GYKSYRCRTVNK 102
           +   D G   Y C   N 
Sbjct: 171 SEETDQG--KYECVATNS 186

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 35.9 bits (83), Expect = 6e-04
 Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 18/83 (21%)

Query: 31  VILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKY-VVLSSGDLYVF 84
           V  G  A L C+      P+          W +    +  + D    + ++L SG L+  
Sbjct: 21  VSKGEPATLNCKAEGRPTPTI--------EWYKGGERVETDKDDPRSHRMLLPSGSLFFL 72

Query: 85  NATPNDGYKS----YRCRTVNKI 103
                   +     Y C   N +
Sbjct: 73  RIVHGRKSRPDEGVYVCVARNYL 95

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 36.9 bits (85), Expect = 7e-04
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 4/85 (4%)

Query: 30  NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVFNA 86
           ++  G TA+L C+  S           I D  +  L   +  ++ V SS     L++ N 
Sbjct: 94  HINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENL 153

Query: 87  TPNDGYKSYRCRTVNKITGESQASV 111
                   YRC   +   G  QA +
Sbjct: 154 NMEADPGQYRCNGTSSK-GSDQAII 177

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 37.1 bits (85), Expect = 7e-04
 Identities = 19/105 (18%), Positives = 28/105 (26%), Gaps = 9/105 (8%)

Query: 16  VVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV 75
           + K    I   YE          L C I        I  +W +++  +       G    
Sbjct: 125 IRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNI--TWYKNNQEL----IIDGTKYS 178

Query: 76  LSSGDLYVFNATPND-GYKSYRCRTVNKITGESQASVFQTRLSIT 119
            S  +L + N    D G   Y C             V      +T
Sbjct: 179 QSGQNLIIHNPELEDSGR--YDCYVHYDDVRIKNDIVVSRCKILT 221

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 36.7 bits (85), Expect = 8e-04
 Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 22/93 (23%)

Query: 29  HNVILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS----G 79
            NV   + A L C++     P           W +    I  +   G KY +        
Sbjct: 14  LNVRYQSNATLVCKVTGHPKPIV--------KWYRQGKEIIAD---GLKYRIQEFKGGYH 62

Query: 80  DLYVFNATPNDGYKSYRCRTVNKITGESQASVF 112
            L + + T +D    Y+ R  N+  G    +  
Sbjct: 63  QLIIASVTDDDATV-YQVRATNQG-GSVSGTAS 93

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 35.4 bits (82), Expect = 9e-04
 Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 13/86 (15%)

Query: 31  VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVFNAT 87
           V +G+   +  ++     E   V  W+++ V +        +Y     G    L   +  
Sbjct: 20  VFVGDRVEMAVEV---SEEGAQVM-WMKNGVELTREDSFKARYRFKKDGKRHILIFSDVV 75

Query: 88  PND-GYKSYRCRTVNKITGESQASVF 112
             D G   Y+  T     G+ +A + 
Sbjct: 76  QEDRG--RYQVITNG---GQCEAELI 96

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	129
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.66
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.64
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.63
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.63
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.62
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.61
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.6
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.58
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.57
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.56
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.56
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.56
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.55
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.55
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.55
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.54
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.54
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.53
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.53
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.53
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.53
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.52
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.52
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.52
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.52
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.5
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.5
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.49
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.49
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.49
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.49
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.47
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.47
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.46
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.46
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.46
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.46
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.46
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.46
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.45
2ens_A	96	Advanced glycosylation END product-specific recept	99.45
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.44
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.44
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.44
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.43
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.43
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.43
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.43
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.43
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.43
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	99.43
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.42
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.42
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.42
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.42
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.41
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.4
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.4
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.4
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.4
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.4
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.39
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.39
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.39
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.38
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.38
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.38
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.37
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.36
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	99.34
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.34
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.34
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.34
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.33
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.33
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.33
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.33
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	99.32
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.31
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.31
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.31
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.31
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.3
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.3
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.3
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.3
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.3
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.3
3khq_A	133	B-cell antigen receptor complex-associated protei	99.3
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.29
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.29
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.29
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.28
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	99.28
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.28
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.28
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.28
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.28
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.28
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	99.27
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	99.27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.27
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.27
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.27
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.27
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.27
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.27
1he7_A	126	High affinity nerve growth factor receptor; transf	99.26
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.26
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.26
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.25
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.25
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.25
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.25
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.24
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.24
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.24
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.24
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.24
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.24
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.23
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.23
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.23
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.23
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	99.23
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.23
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.23
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.23
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.23
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.23
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.22
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	99.22
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.22
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.22
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.21
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.21
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.21
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.2
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.2
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.2
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	99.19
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.19
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.19
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.18
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.18
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.18
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.17
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.17
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.17
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.17
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.17
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.17
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.17
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.17
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.17
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.17
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.17
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.17
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.16
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.16
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.16
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.16
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.16
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	99.16
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.16
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.15
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.15
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.15
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	99.15
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.15
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.15
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.15
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.14
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.14
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.14
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.13
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.13
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.13
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.13
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.13
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.13
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	99.13
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.13
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.13
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.12
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.12
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.12
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.12
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.12
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.12
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.12
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.12
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.12
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.11
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.11
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.11
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.11
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.11
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.1
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.1
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.1
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.1
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	99.1
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.1
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	99.1
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.09
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.09
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	99.09
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.09
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.09
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.09
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	99.09
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.09
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.08
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.08
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.08
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.08
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.08
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.07
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.07
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.07
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	99.07
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.07
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.07
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.07
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.06
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.06
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.06
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.06
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.06
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.06
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.06
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.06
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.05
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.05
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.05
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.05
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.05
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.05
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.04
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.04
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.04
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.04
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.04
1xt5_A	135	Variable region-containing chitin-binding protein	99.04
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.03
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.03
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.03
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.03
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.03
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.03
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.03
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.03
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.02
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.02
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.02
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.02
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.02
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.02
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.01
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.01
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.01
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.01
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.01
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	99.01
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	99.01
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.01
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.01
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.0
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.0
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.0
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.0
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.0
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.0
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.0
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.0
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.0
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.0
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	98.99
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	98.99
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	98.99
1c5d_H	215	Monoclonal antibody against the main immunogenic t	98.99
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	98.98
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	98.98
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	98.98
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	98.98
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	98.98
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	98.98
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	98.98
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	98.98
3noi_A	120	Natural cytotoxicity triggering receptor 3; immune	98.97
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	98.97
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	98.97
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	98.97
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	98.97
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	98.97
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	98.96
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	98.96
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	98.96
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	98.96
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	98.96
1nko_A	132	Sialic acid binding IG-like lectin 7; immunoglobul	98.96
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	98.96
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	98.95
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	98.95
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	98.95
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	98.95
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	98.95
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	98.95
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	98.95
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	98.95
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	98.95
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	98.95
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	98.94
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	98.94
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	98.94
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	98.94
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	98.94
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	98.94
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	98.94
1qfo_A	119	Protein (sialoadhesin); immunoglobulin superfamily	98.94
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	98.94
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	98.94
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	98.94
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	98.94
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	98.93
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	98.93
3rrq_A	129	Protein PD-1, programmed cell death protein 1; pro	98.93
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	98.93
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	98.93
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	98.93
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	98.93
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	98.93
1oaq_L	120	Light chain; antibody, allergy, IGE, conformationa	98.92
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	98.92
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	98.92
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	98.91
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	98.91
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	98.91
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	98.91
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	98.91
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	98.91
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	98.91
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	98.91
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	98.91
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	98.91
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	98.91
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	98.91
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	98.9
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	98.9
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	98.9
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	98.89
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	98.89
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	98.89
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	98.88
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	98.88
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	98.88
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	98.88
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	98.87
3umt_A	256	SCFV heavy chain and light chain; stability engine	98.86
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	98.86
1eeq_A	114	Kappa-4 immunoglobulin (light chain); protein stab	98.86
1u3h_A	110	T-cell receptor alpha-chain; complex, immune syste	98.37
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	98.85
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	98.85
3kg5_A	134	B-cell antigen receptor complex-associated protei	98.85
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	98.85
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	98.85
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	98.85
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	98.84
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	98.84
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	98.84
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	98.84
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.84
3bp6_A	117	Programmed cell death protein 1; PD-1, PD-L2, comp	98.84
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	98.83
3bj9_1	116	Immunoglobulin IOTA chain, immunoglobulin lambda-	98.83
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	98.83
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	98.82
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	98.82
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	98.82
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	98.82
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	98.82
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	98.82
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	98.81
3bik_B	134	Programmed cell death protein 1; CO-stimulation, r	98.81
2pkd_A	111	SLAM family member 5; signaling lymphocyte activat	98.8
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.8
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	98.8
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	98.8
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	98.8
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	98.79
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	98.79
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	98.79
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	98.79
2yz1_A	120	Tyrosine-protein phosphatase non-receptor type sub	98.78
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	98.78
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	98.78
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	98.78
1tvd_A	116	T cell receptor, ES204 V delta; immunoreceptor, TC	98.76
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	98.76
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	98.76
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	98.75
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	98.75
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	98.75
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	98.75
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	98.75
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	98.74
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	98.74
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	98.74
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	98.74
3t0v_A	123	Immunoglobulin variable lambda domain; immunoglobu	98.73
2atp_B	115	T-cell surface glycoprotein CD8 beta chain; CD8AB,	98.73
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	98.73
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	98.73
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	98.72
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	98.72
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	98.72
1dlf_L	113	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	98.71
2qhl_A	111	Novel immune-type receptor 10; immunoglobulin vari	98.71
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	98.71
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	98.71
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	98.7
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	98.7
3bdb_A	137	Novel immune-type receptor 11; immunoglobulin vari	98.7
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	98.7
1p4b_L	135	Antibody variable light chain; FV antibody, antige	98.69
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	98.69
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	98.69
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	98.68
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	98.68
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	98.68
2z35_A	112	T-cell receptor alpha-chain; immune receptor, immu	98.67
1fo0_A	116	Protein (BM3.3 T cell receptor alpha-chain); class	98.67
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	98.66
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	98.66
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	98.66
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	98.66
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	98.65
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	98.64
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	98.64
1a2y_B	116	IGG1-kappa D1.3 FV (heavy chain); complex (immunog	98.64
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	98.64
2pnd_A	119	V-SET and immunoglobulin domain containing 4; comp	98.63
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	98.63
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	98.63
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	98.62
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	98.62
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	98.62
1fo0_B	112	Protein (BM3.3 T cell receptor beta-chain); class	98.61
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	98.61
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	98.6
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	98.6
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	98.6
3sob_L	237	Antibody light chain; beta propeller, protein bind	98.6
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	98.59
1u9k_A	114	Triggering receptor expressed on myeloid cells 1;	98.59
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	98.59
2yc1_A	117	Single chain antibody fragment 9004G; immune syste	98.59
2wzp_D	123	Camelid VHH5; baseplate, viral protein; 2.60A {Lam	98.59
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	98.59
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	98.58
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	98.58
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	98.58
2oi9_C	121	V beta, T cell receptor beta chain; TCR, MHC, immu	98.57
1kxv_C	121	Camelid VHH domain CAB10; beta 8 alpha 8, beta bar	98.57
1n4x_H	120	Immunoglobulin heavy chain variable region; immune	98.57
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	98.57
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	98.57
3cx5_J	127	Heavy chain (VH) of FV-fragment; complex III, elec	98.56
1mfa_H	120	IGG1-lambda Se155-4 FAB (heavy chain); immunoglobu	98.56
2h32_A	126	Immunoglobulin IOTA chain; beta sheets, V and C-ty	98.56
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	98.55
2p45_B	123	Antibody CAB-RN05; seMet phasing, camelid single-d	98.55
2i24_N	121	NEW antigen receptor PBLA8; immunoglobulin fold, i	98.55
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	98.54
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.54
1yc7_A	124	Anti-VSG immunoglobulin heavy chain variable domai	98.54
3kgr_A	106	LAIR-1, hlair1, leukocyte-associated immunoglobuli	98.53
1mqk_H	127	Antibody 7E2 FV fragment, heavy chain; membrane pr	98.53
2bnu_A	203	TCR alpha chain, T-cell receptor alpha chain C reg	98.52
3u6r_L	143	Antibody 1:7 (light chain); IG-like domain, neutra	98.52
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	98.52
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	98.52
2otu_A	115	FV light chain variable domain; antibody FV polygl	98.51
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	98.51
3b9v_A	120	Heavy chain variable domain; antibody engineering,	98.51
1j05_H	121	T84.66 antibody, anti-CEA MAB T84.66, heavy chain;	98.51
2nms_A	124	CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP4	98.5
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	98.5
2hp4_A	114	T-cell surface glycoprotein CD8 alpha chain; CO-re	98.5
2ol3_A	142	BM3.3 T-cell receptor alpha-chain; T cell receptor	98.5
2xt1_B	121	Camelid VHH 9; viral protein-immune system complex	98.49
2eys_A	210	NKT15; natural killer T cell receptor, immune syst	98.49
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	98.49
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	98.49
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	98.48
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	98.48

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.66  E-value=1.8e-16  Score=108.52  Aligned_cols=90  Identities=21%  Similarity=0.305  Sum_probs=72.8

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc---cEEEeccCCCCCCcceE
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVFNATPNDGYKSYR   96 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG---~L~I~nv~~~D~g~~Y~   96 (129)
                      .|...+++. .|.+|+++.|.|.+.+.|.   +.++|++|+..|.    .+.||.+..+|   .|.|.+++.+|+| .|+
T Consensus        15 ~f~~~p~~~-~v~~G~~~~l~C~~~G~P~---p~v~W~k~g~~l~----~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~   85 (107)
T 3knb_B           15 CFLRFPRPV-RVVSGAEAELKCVVLGEPP---PVVVWEKGGQQLA----ASERLSFPADGAEHGLLLTAALPTDAG-VYV   85 (107)
T ss_dssp             EEEECCCCE-EEETTSCEEEEEEEEEESC---CEEEEEETTEECC----CCSSEECCEETTEEEEEESSCCGGGCE-EEE
T ss_pred             EEEeCCCcE-EEeCCCcEEEEEEEEEecC---CEEEEEECccccc----ceeeEEEeecCceEEEEEecCChhhCE-EEE
Confidence            466667777 9999999999999987764   5789999998884    35788887655   5999999999997 999


Q ss_pred             EEeecccCCeEEecccceEEEEecCC
Q psy5694          97 CRTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        97 C~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      |+|.|.+ |+...   .+.|.|.+|+
T Consensus        86 C~a~N~~-G~~~~---~~~l~V~~pP  107 (107)
T 3knb_B           86 CRARNAA-GEAYA---AAAVTVLEPP  107 (107)
T ss_dssp             EEEEETT-EEEEE---EEEEEEEC--
T ss_pred             EEEEECC-CEEEE---EEEEEEEcCC
Confidence            9999998 77433   4699998763

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=5.4e-16  Score=104.57  Aligned_cols=87  Identities=18%  Similarity=0.321  Sum_probs=71.0

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc---cEEEeccCCCCCCcceEE
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG---~L~I~nv~~~D~g~~Y~C   97 (129)
                      |...+++. .|.+|++|.|.|.+  .+.   +.+.|++|+..|.    .++||.+..+|   .|.|.+++.+|+| .|+|
T Consensus        10 ~~~~~~~~-~v~~G~~v~l~C~v--~p~---p~v~W~k~g~~l~----~~~r~~i~~~~~~~~L~I~~v~~~D~G-~Y~C   78 (100)
T 2yuz_A           10 ILTPLTDQ-TVNLGKEICLKCEI--SEN---IPGKWTKNGLPVQ----ESDRLKVVQKGRIHKLVIANALTEDEG-DYVF   78 (100)
T ss_dssp             CSBCCCCE-EEETTSCCCEEEEC--SSC---CCEEEEETTEECC----CCSSEEEEECSSEEEEEESSCCGGGCS-EEEE
T ss_pred             EeccCCce-EEcCCCCEEEEEEe--CCC---CeEEEEECCEECC----CCCcEEEEEeCCEEEEEECCCChhhCE-EEEE
Confidence            44556677 89999999999999  442   5689999998885    35789888777   6999999999998 9999


Q ss_pred             EeecccCCeEEecccceEEEEecCCCC
Q psy5694          98 RTVNKITGESQASVFQTRLSITGKLKS  124 (129)
Q Consensus        98 ~a~N~ltge~k~S~~~~~L~V~ep~~~  124 (129)
                      .|.|.     ..+. .+.|.|.+|+.+
T Consensus        79 ~a~N~-----~~~~-~a~L~V~~~P~s   99 (100)
T 2yuz_A           79 APDAY-----NVTL-PAKVHVISGPSS   99 (100)
T ss_dssp             EESSS-----CCCE-EEEEEEECCSCC
T ss_pred             EEcCC-----CeeE-EEEEEEeCCCCC
Confidence            99997     2244 779999988764

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.63  E-value=6.3e-16  Score=104.24  Aligned_cols=90  Identities=17%  Similarity=0.261  Sum_probs=72.1

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc---cEEEeccCCCCCCcceE
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVFNATPNDGYKSYR   96 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG---~L~I~nv~~~D~g~~Y~   96 (129)
                      .|...+++. .|.+|+++.|.|.+.+.|+   +.++|++|+..|...  .+.||.+..++   .|.|.+++.+|+| .|+
T Consensus         7 ~i~~~p~~~-~v~~G~~~~l~C~~~g~P~---p~v~W~k~g~~i~~~--~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~   79 (100)
T 3knb_A            7 KIEALPSDI-SIDEGKVLTVACAFTGEPT---PEVTWSCGGRKIHSQ--EQGRFHIENTDDLTTLIIMDVQKQDGG-LYT   79 (100)
T ss_dssp             EECCCCSEE-EEETTSEEEEEEEEEEESC---CEEEEEETTEECCTT--GGGTEEEEECSSEEEEEESSCCGGGCE-EEE
T ss_pred             EEEeCCCcE-EEeCCCeEEEEEEEEEecC---CEEEEEECceEeeee--ccceeeeecccceEEEEEcCCCccCCE-EEE
Confidence            455566777 9999999999999987774   679999999888542  35688887655   5999999999997 999


Q ss_pred             EEeecccCCeEEecccceEEEEec
Q psy5694          97 CRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        97 C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      |.|.|.. |+.  +. .+.|.|++
T Consensus        80 C~a~N~~-G~~--~~-~~~l~V~~   99 (100)
T 3knb_A           80 LSLGNEF-GSD--SA-TVNIHIRS   99 (100)
T ss_dssp             EEEEETT-EEE--EE-EEEEEEEC
T ss_pred             EEEEECC-CEE--EE-EEEEEEEE
Confidence            9999998 764  33 45888864

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.63  E-value=7.9e-16  Score=132.60  Aligned_cols=115  Identities=43%  Similarity=0.755  Sum_probs=94.6

Q ss_pred             eeeeEEeeeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceee-ecccCCCceEEEccCccEEEeccCCCC
Q psy5694          12 PMLPVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI-YLNTDTGGKYVVLSSGDLYVFNATPND   90 (129)
Q Consensus        12 ~v~AVv~q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i-~~~~~~~~ry~vlpsG~L~I~nv~~~D   90 (129)
                      .|++++.+.|...++.. .|.+|++|+|+|.+|+..++..+.+.|++++..+ .+....++||.++++|.|+|+||+.+|
T Consensus       132 ~v~~~~~~~~~~~~~~~-~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~r~~~~~~g~L~I~~v~~~D  210 (816)
T 3dmk_A          132 HVRAVVAQYYEADVNKE-HVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPED  210 (816)
T ss_dssp             EEEEECCCCCCCBCCCE-EEETTSCEEECCBCCHHHHTTEEEEEEEETTSCEECBSSCBTTTEEECTTSCEEESSCCGGG
T ss_pred             EEEEEEccccEEEEecc-eEecCceEEEEECCCccccccEEEEEEEecCceEeccccCCCceEEEecCceEEEecCChhh
Confidence            46667778888888888 9999999999999988766666889999998443 232335789999999999999999999


Q ss_pred             CCcceEEEeecccCCeEEecccceEEEEecCCCCCCC
Q psy5694          91 GYKSYRCRTVNKITGESQASVFQTRLSITGKLKSLCT  127 (129)
Q Consensus        91 ~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~~~~~~  127 (129)
                      ++|.|+|++.|..+|+.+.+...+.|.|.+|....++
T Consensus       211 ~~g~Y~C~~~~~~~~~~~~s~~~~~l~v~~~~~~~~P  247 (816)
T 3dmk_A          211 GYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVP  247 (816)
T ss_dssp             SSCEEEEEEEETTTCCEEECSBCEEEEEECCCSCCCC
T ss_pred             ccceeEEEEeeeeeeeeeecccccceEEeCCCCCCCC
Confidence            8339999999999999888887789999887654443

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=2.2e-15  Score=99.20  Aligned_cols=89  Identities=20%  Similarity=0.306  Sum_probs=73.3

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEee
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      +...+.+. .+..|+++.|.|.+.+.+.   +.+.|++++..|..   .+.++.+..+|.|.|.+++.+|+| .|+|.|.
T Consensus        11 i~~~p~~~-~v~~G~~~~l~C~~~g~p~---p~v~W~~~~~~~~~---~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a~   82 (100)
T 2edj_A           11 ILQGPANQ-TLAVDGTALLKCKATGDPL---PVISWLKEGFTFPG---RDPRATIQEQGTLQIKNLRISDTG-TYTCVAT   82 (100)
T ss_dssp             EEECCCCE-EEESSSEEEECCEEECSSC---CEEEEEESSSEESS---SCSSCEECTTCCEEEESCCTTTCC-EEEEEEE
T ss_pred             EEeCcCCE-EEcCCCcEEEEEEEEEcCC---CEEEEEECCEECCC---CCCCEEEcCCCEEEEccCCcccCE-EEEEEEE
Confidence            44456666 8899999999999987764   56899999977742   467888999999999999999998 9999999


Q ss_pred             cccCCeEEecccceEEEEecC
Q psy5694         101 NKITGESQASVFQTRLSITGK  121 (129)
Q Consensus       101 N~ltge~k~S~~~~~L~V~ep  121 (129)
                      |.. |+.  +. .+.|.|.++
T Consensus        83 n~~-g~~--~~-~~~l~V~~~   99 (100)
T 2edj_A           83 SSS-GET--SW-SAVLDVTES   99 (100)
T ss_dssp             CSS-CCC--BC-CEEEEEESC
T ss_pred             cCC-CCE--EE-EEEEEEecC
Confidence            998 553  43 668999876

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.61  E-value=1.4e-15  Score=101.58  Aligned_cols=83  Identities=13%  Similarity=0.139  Sum_probs=67.5

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc---cEEEeccCCCCCCcceEE
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG---~L~I~nv~~~D~g~~Y~C   97 (129)
                      |...+++. .|.+|++|.|.|.+.+.+    +.+.|++|+..|.+    ++||.+..+|   .|.|.+++.+|+| .|+|
T Consensus         8 ~~~~~~~~-~v~~G~~v~l~C~v~~~~----~~v~W~k~g~~i~~----~~~~~i~~~g~~~~L~I~~v~~~D~G-~Y~C   77 (93)
T 1waa_A            8 VEKPLYGV-EVFVGETAHFEIELSEPD----VHGQWKLKGQPLAA----SPDCEIIEDGKKHILILHNCQLGMTG-EVSF   77 (93)
T ss_dssp             EEECCCCE-EEETTSCEEEEEEESSSS----CCCEEEETTEECCC----BTTEEEEEETTEEEEEECSCCGGGCE-EEEE
T ss_pred             eeccCcce-EEeCCCCEEEEEEECCCC----CeEEEEECCEECcC----CCCEEEEEECCEEEEEECCCChhhCE-EEEE
Confidence            44556677 899999999999996432    45899999988854    4788887777   6999999999997 9999


Q ss_pred             EeecccCCeEEecccceEEEEecC
Q psy5694          98 RTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        98 ~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      .|.|.       ++ .++|.|.+|
T Consensus        78 ~a~n~-------~~-sa~L~V~~~   93 (93)
T 1waa_A           78 QAANT-------KS-AANLKVKEL   93 (93)
T ss_dssp             EETTE-------EE-EEEEEEECC
T ss_pred             EECCC-------cE-EEEEEEEcC
Confidence            99984       22 679999876

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=6.3e-15  Score=100.03  Aligned_cols=90  Identities=19%  Similarity=0.196  Sum_probs=73.4

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEee
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      +...+.+. .+..|+++.|.|.+.+.+.   +.+.|++++..|..   .+.|+.+..+|.|.|.+++.+|+| .|+|.|.
T Consensus        11 i~~~p~~~-~v~~G~~v~l~C~~~g~p~---p~i~W~k~g~~~~~---~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~a~   82 (118)
T 2eo9_A           11 IRQGPVNQ-TVAVDGTFVLSCVATGSPV---PTILWRKDGVLVST---QDSRIKQLENGVLQIRYAKLGDTG-RYTCIAS   82 (118)
T ss_dssp             CSBCCCCE-EEETTCEEEEECBCCCSSC---CEEEEEESSSBCCT---TSTTEEEEETTEEEEESCCGGGCC-CEEEEEE
T ss_pred             EEcCCCCE-EEcCCCeEEEEEEEEecCC---CEEEEEECCEECcC---CCCeEEEccCCEEEEccCCcCCCE-EEEEEEE
Confidence            44556666 8999999999999987764   57999999977743   468898999999999999999998 9999999


Q ss_pred             cccCCeEEecccceEEEEecCC
Q psy5694         101 NKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus       101 N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      |.. |....   .+.|.|.++.
T Consensus        83 n~~-g~~~~---~~~l~V~~~~  100 (118)
T 2eo9_A           83 TPS-GEATW---SAYIEVQEFG  100 (118)
T ss_dssp             CSS-CEEEE---ECCEEEECCS
T ss_pred             cCC-CcEEE---EEEEEEEeCC
Confidence            998 66433   4578888664

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.58  E-value=8.3e-15  Score=100.36  Aligned_cols=96  Identities=18%  Similarity=0.320  Sum_probs=76.9

Q ss_pred             eeeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc----cEEEeccCCCCCCc
Q psy5694          18 KQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG----DLYVFNATPNDGYK   93 (129)
Q Consensus        18 ~q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG----~L~I~nv~~~D~g~   93 (129)
                      ...|...+++. .|.+|+++.|.|.+.+.+.   +.+.|++++..|..   ..+||.+..++    .|.|.+++.+|+| 
T Consensus        15 ~p~f~~~p~~~-~v~~G~~v~L~C~~~g~p~---p~v~W~k~~~~~~~---~~~~~~~~~~~~~~~~L~I~~v~~~D~G-   86 (116)
T 2kkq_A           15 APMFIYKPQSK-KVLEGDSVKLECQISAIPP---PKLFWKRNNEMVQF---NTDRISLYQDNTGRVTLLIKDVNKKDAG-   86 (116)
T ss_dssp             CCCBSSCCCCE-EEETTEEEEEEEEBCCBSC---CEEEEEETTEECCC---CBTTEEEEECTTCEEEEEEEEECGGGCE-
T ss_pred             CCeEEeCCCcE-EEeCCCcEEEEEEEeccCC---CEEEEEECCEECcC---CCCeEEEEeCCCCeEEEEECCCCcccCE-
Confidence            35566777887 9999999999999988774   57999999977743   35788887654    7999999999997 


Q ss_pred             ceEEEeecccCCeEEecccceEEEEecCCCCC
Q psy5694          94 SYRCRTVNKITGESQASVFQTRLSITGKLKSL  125 (129)
Q Consensus        94 ~Y~C~a~N~ltge~k~S~~~~~L~V~ep~~~~  125 (129)
                      .|+|.|.|.. |..  +. .+.|.|.++....
T Consensus        87 ~Y~C~a~N~~-G~~--~~-~~~l~V~~~p~~~  114 (116)
T 2kkq_A           87 WYTVSAVNEA-GVT--TC-NTRLDVTARPNQT  114 (116)
T ss_dssp             EEEEEEEETT-EEE--EE-EEEEEEECCSCCC
T ss_pred             EEEEEEEcCC-CeE--EE-EEEEEEeCCCCCC
Confidence            9999999998 653  33 5689998776543

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.57  E-value=1.2e-14  Score=95.06  Aligned_cols=89  Identities=19%  Similarity=0.425  Sum_probs=70.3

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc---cEEEeccCCCCCCcceE
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVFNATPNDGYKSYR   96 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG---~L~I~nv~~~D~g~~Y~   96 (129)
                      .+...+.+. .+..|.++.|.|.+.+.|+   +.+.|++++..|..   .+.++.+..+|   .|.|.+++.+|+| .|+
T Consensus         7 ~~~~~~~~~-~v~~G~~v~l~C~~~g~p~---p~v~W~k~~~~~~~---~~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~   78 (99)
T 1u2h_A            7 TFKVSLMDQ-SVREGQDVIMSIRVQGEPK---PVVSWLRNRQPVRP---DQRRFAEEAEGGLCRLRILAAERGDAG-FYT   78 (99)
T ss_dssp             EEEECCCCE-EEETTCCEEEEEEEEEESC---CEEEEEETTEECCC---BTTEEEEECGGGEEEEEESSCCGGGCE-EEE
T ss_pred             EEEEcCCce-EecCCCEEEEEEEEEEcCC---CEEEEEECCEECCC---CCCEEEEECCCCEEEEEEccCCcCCCE-EEE
Confidence            345556666 8999999999999977664   57899999987753   34678777666   5999999999997 999


Q ss_pred             EEeecccCCeEEecccceEEEEec
Q psy5694          97 CRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        97 C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      |.|.|.. |+.  +. .+.|.|++
T Consensus        79 C~a~N~~-g~~--~~-~~~l~V~~   98 (99)
T 1u2h_A           79 CKAVNEY-GAR--QC-EARLEVRG   98 (99)
T ss_dssp             EEEEETT-EEE--EE-EEEEEEEC
T ss_pred             EEEEECC-Cce--eE-EEEEEEEC
Confidence            9999998 663  33 45888875

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.56  E-value=6e-15  Score=97.44  Aligned_cols=75  Identities=19%  Similarity=0.220  Sum_probs=61.6

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc---cEEEeccCCCCCCcceEEEeecccCCe
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGE  106 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG---~L~I~nv~~~D~g~~Y~C~a~N~ltge  106 (129)
                      .+..|+++.|.|.+.+ |+   +.+.|++|+..|.+    +++|.+..+|   .|.|.+++.+|+| .|+|.|.|.    
T Consensus         7 ~~~~G~~v~l~C~vs~-p~---p~v~W~k~g~~l~~----~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~n~----   73 (84)
T 2lu7_A            7 RSTPGGDLELVVHLSG-PG---GPVRWYKDGERLAS----QGRVQLEQAGARQVLRVQGARSGDAG-EYLCDAPQD----   73 (84)
T ss_dssp             EECTTSCEEEECCCSC-CS---TTCEEEETTEECCC----CSSEEEEECSSCEEEEESSCSSTTCE-EEEEECTTT----
T ss_pred             EEecCCCEEEEEEECC-CC---cEEEEEECCEEccc----cccEEEeecCCeEEEEecCCCCcccE-EEEEEECCE----
Confidence            8899999999999954 43   45899999988854    5788887766   4999999999997 999999663    


Q ss_pred             EEecccceEEEEecC
Q psy5694         107 SQASVFQTRLSITGK  121 (129)
Q Consensus       107 ~k~S~~~~~L~V~ep  121 (129)
                         +. .+.|.|++|
T Consensus        74 ---~~-~a~l~V~eP   84 (84)
T 2lu7_A           74 ---SR-IFLVSVEEP   84 (84)
T ss_dssp             ---CE-EEEEEECCC
T ss_pred             ---EE-EEEEEEECC
Confidence               22 569999987

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.56  E-value=1.2e-14  Score=97.07  Aligned_cols=92  Identities=16%  Similarity=0.213  Sum_probs=72.4

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc---cEEEeccCCCCCCcceEE
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG---~L~I~nv~~~D~g~~Y~C   97 (129)
                      |...+++. .|.+|+++.|.|.+.+.+.   + +.|++++..|.+    +.||.+..+|   .|.|.+++.+|+| .|+|
T Consensus        11 ~~~~~~~~-~v~~G~~v~l~C~~~~~~~---~-v~W~k~g~~~~~----~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C   80 (106)
T 2dlt_A           11 VLQDIADL-TVKAAEQAVFKCEVSDEKV---T-GKWYKNGVEVRP----SKRITISHVGRFHKLVIDDVRPEDEG-DYTF   80 (106)
T ss_dssp             EEECCCCE-EEESSCCEECCCEESCSSC---E-EEEEESSCBCCC----CSSCEEEEETTEEEEEESSCCTTTCS-CEEE
T ss_pred             EecCCCCe-EEeCCCeEEEEEEEcCCCc---c-eEEEcCCEECcC----CCCEEEEEeCCEEEEEECCCCcCCCE-EEEE
Confidence            45556677 8999999999999986653   4 899999977743    4688887777   7999999999998 9999


Q ss_pred             EeecccCCeEEecccceEEEEecCCCCCCCC
Q psy5694          98 RTVNKITGESQASVFQTRLSITGKLKSLCTS  128 (129)
Q Consensus        98 ~a~N~ltge~k~S~~~~~L~V~ep~~~~~~~  128 (129)
                      .|.|. .+    +. .+.|.|.+..-..|++
T Consensus        81 ~a~n~-~~----~~-~~~l~V~~~~~~~p~s  105 (106)
T 2dlt_A           81 VPDGY-AL----SL-SAKLNFLEIKVSGPSS  105 (106)
T ss_dssp             EEETS-CC----CC-CBCEEEECCCCCSCCC
T ss_pred             EEccC-Cc----eE-EEEEEEEEEeCCCCCC
Confidence            99997 12    33 6688888766555543

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=8.7e-15  Score=98.86  Aligned_cols=88  Identities=13%  Similarity=0.182  Sum_probs=70.0

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc---cEEEeccCCCCCCcceEE
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG---~L~I~nv~~~D~g~~Y~C   97 (129)
                      |...+++. .|.+|++|.|.|.+.+.+..  +.+.|++|+..|.+    ++||.+..+|   .|.|.|++.+|+| .|+|
T Consensus        11 ~~~~~~~~-~v~~G~~v~l~C~v~~~~~~--~~v~W~k~g~~i~~----~~r~~~~~~~~~~~L~I~~v~~~D~G-~Y~C   82 (104)
T 2eny_A           11 ITKRLKTM-EVLEGESCSFECVLSHESAS--DPAMWTVGGKTVGS----SSRFQATRQGRKYILVVREAAPSDAG-EVVF   82 (104)
T ss_dssp             CSBCCCCE-EEESSCCEEEEEECSSCCCS--SCBCCBSSSSBCSB----CSSCEEEEETTEEEEEECSCCTTTCS-CEEE
T ss_pred             EEecCCCc-EEcCCCcEEEEEEEcCCCCC--ceeEEEECCEECCC----CCCEEEEEcCCEEEEEECCCCHHHCE-EEEE
Confidence            45556677 99999999999999876532  35899999988753    4688888777   5999999999998 9999


Q ss_pred             EeecccCCeEEecccceEEEEecCCCC
Q psy5694          98 RTVNKITGESQASVFQTRLSITGKLKS  124 (129)
Q Consensus        98 ~a~N~ltge~k~S~~~~~L~V~ep~~~  124 (129)
                      .|.|.       +. .+.|.|.+++..
T Consensus        83 ~a~~~-------~~-~a~L~V~~~p~~  101 (104)
T 2eny_A           83 SVRGL-------TS-KASLIVRERSGP  101 (104)
T ss_dssp             EETTE-------EE-EECEEEECCCSS
T ss_pred             EECCe-------eE-EEEEEEeCCCcC
Confidence            98663       23 679999987643

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.55  E-value=2e-14  Score=94.10  Aligned_cols=91  Identities=16%  Similarity=0.256  Sum_probs=69.4

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc--cEEEeccCCCCCCcceEE
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG--DLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG--~L~I~nv~~~D~g~~Y~C   97 (129)
                      .+...+.+. .+..|+++.|.|.+.+.|.   +.+.|++++..|...  ...++....+|  .|.|.+++.+|+| .|+|
T Consensus         7 ~~~~~p~~~-~~~~G~~~~l~C~~~g~p~---p~v~W~~~g~~~~~~--~~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C   79 (100)
T 2kdg_A            7 RFIQVPENM-SIDEGRFCRMDFKVSGLPA---PDVSWYLNGRTVQSD--DLHKMIVSEKGLHSLIFEVVRASDAG-AYAC   79 (100)
T ss_dssp             ECCCCCCCE-EEETTCCEEEEEECEEESC---CEEEEEETTEEECCC--SSSCEEEETTTEEEEEESSCCGGGCE-EEEE
T ss_pred             eEEeCCCCE-EecCCCEEEEEEEEEeeCC---CEEEEEECCEECcCC--CcEEEEEcCCCeEEEEECCCCcccCE-EEEE
Confidence            344556666 8999999999999987664   579999999877542  23345555666  8999999999997 9999


Q ss_pred             EeecccCCeEEecccceEEEEecC
Q psy5694          98 RTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        98 ~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      .|.|.. |+.  +. .+.|.|.+.
T Consensus        80 ~a~n~~-g~~--~~-~~~l~V~~~   99 (100)
T 2kdg_A           80 VAKNRA-GEA--TF-TVQLDVLAK   99 (100)
T ss_dssp             EEEETT-EEE--EE-EEEEEEECC
T ss_pred             EEEcCC-CeE--EE-EEEEEEEec
Confidence            999998 663  33 558888754

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.55  E-value=1.9e-14  Score=94.86  Aligned_cols=89  Identities=19%  Similarity=0.300  Sum_probs=70.8

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc---cEEEeccCCCCCCcceE
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVFNATPNDGYKSYR   96 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG---~L~I~nv~~~D~g~~Y~   96 (129)
                      .|...+.+. .+.+|+++.|.|.+.+.|.   +.+.|++|+..|..    +.||.+..++   .|.|.+++.+|+| .|+
T Consensus        10 ~~~~~~~~~-~v~~G~~v~l~C~~~g~p~---p~i~W~k~~~~~~~----~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~   80 (103)
T 3qp3_A           10 RITLRMRSH-RVPCGQNTRFILNVQSKPT---AEVKWYHNGVELQE----SSKIHYTNTSGVLTLEILDCHTDDSG-TYR   80 (103)
T ss_dssp             EEEECCCCE-EEETTCCEEEEEEEEEESC---CEEEEEETTEECCC----CSSEEEEEETTEEEEEECSCCGGGCE-EEE
T ss_pred             EEEeCCcce-EEeCCCeEEEEEEEEecCC---CEEEEEECCEECCC----CCCEEEEECCCEEEEEEcCCCcccCE-EEE
Confidence            455566667 8999999999999977664   57999999987743    4678776544   5999999999997 999


Q ss_pred             EEeecccCCeEEecccceEEEEecC
Q psy5694          97 CRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        97 C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      |.|.|.. |+.  +. .+.|.|+..
T Consensus        81 C~a~N~~-G~~--~~-~~~l~V~~~  101 (103)
T 3qp3_A           81 AVCTNYK-GEA--SD-YATLDVTGG  101 (103)
T ss_dssp             EEEEETT-EEE--EE-EEEEEEECC
T ss_pred             EEEEeCC-CcE--EE-EEEEEEECC
Confidence            9999988 664  33 568888764

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.54  E-value=4e-14  Score=92.68  Aligned_cols=89  Identities=21%  Similarity=0.319  Sum_probs=65.9

Q ss_pred             eeeE-eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEE
Q psy5694          20 KYEI-NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCR   98 (129)
Q Consensus        20 ~y~~-~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~   98 (129)
                      +|.. .+++. .+.+|+++.|.|.+.+.     +.+.|.+|+..|.+    +.|+.+ .++.|.|.+++.+|+| .|+|.
T Consensus         2 ~~~~~~p~~~-~v~~G~~~~l~C~~~~~-----p~v~W~k~g~~~~~----~~~~~~-~~~~L~i~~~~~~D~G-~Y~C~   69 (95)
T 4hwu_A            2 DYGGSQPEAY-VVAPGESLELQCMLKDA-----AVISWTKDGVHLGP----NNRTVL-IGEYLQIKGATPRDSG-LYACT   69 (95)
T ss_dssp             ------CEEE-EECTTSCEEEECCCCTT-----CEEEEEETTEEECC----CSSEEE-ETTEEEECSCCGGGCE-EEEEE
T ss_pred             cccccCCCcE-EECCCCEEEEEEEeCCC-----CEEEEEECCEECCC----CceEEE-eCCEEEECcCCcccCE-EEEEE
Confidence            4455 34455 89999999999998752     47899999987743    467765 4789999999999997 99999


Q ss_pred             eecccCCeEEecccceEEEEecCCCC
Q psy5694          99 TVNKITGESQASVFQTRLSITGKLKS  124 (129)
Q Consensus        99 a~N~ltge~k~S~~~~~L~V~ep~~~  124 (129)
                      |.|.. |..  +. ...|.|.++...
T Consensus        70 a~n~~-g~~--~~-~~~l~V~~~~~~   91 (95)
T 4hwu_A           70 AARTV-DSE--TW-IFMVNVTDAAEN   91 (95)
T ss_dssp             EECSS-CEE--EE-EEEEEECCC---
T ss_pred             EccCC-CcE--EE-EEEEEEeCCccc
Confidence            99998 553  33 568999988654

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=4.5e-14  Score=94.51  Aligned_cols=91  Identities=19%  Similarity=0.319  Sum_probs=71.2

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc--Cc--cEEEeccCCCCCCcceE
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS--SG--DLYVFNATPNDGYKSYR   96 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp--sG--~L~I~nv~~~D~g~~Y~   96 (129)
                      |...+.+. .+.+|+++.|.|.+.+.+.   +.+.|++++..|..   ...||.+..  +|  .|.|.+++.+|.| .|+
T Consensus        11 ~~~~~~~~-~v~~G~~v~l~C~~~g~p~---p~v~W~k~g~~~~~---~~~~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~   82 (110)
T 2dm2_A           11 FEMKLKHY-KIFEGMPVTFTCRVAGNPK---PKIYWFKDGKQISP---KSDHYTIQRDLDGTCSLHTTASTLDDDG-NYT   82 (110)
T ss_dssp             BSSCCCCE-EEETTCCEEEEEEBCCSSC---CEEEEECSSCBCCT---TCSSEEEEECTTCEEEEEESSCCTTTCS-CCE
T ss_pred             EEecCcCe-EEeCCCeEEEEEEEEecCC---CEEEEEECCEECCC---CCCeEEEEECCCcEEEEEECCCChhhCE-EEE
Confidence            44455666 8999999999999987764   57999999977743   246777764  45  5999999999998 999


Q ss_pred             EEeecccCCeEEecccceEEEEecCCC
Q psy5694          97 CRTVNKITGESQASVFQTRLSITGKLK  123 (129)
Q Consensus        97 C~a~N~ltge~k~S~~~~~L~V~ep~~  123 (129)
                      |.|.|.. |..  +. .+.|.|.++..
T Consensus        83 C~a~N~~-g~~--~~-~~~l~V~~~~~  105 (110)
T 2dm2_A           83 IMAANPQ-GRI--SC-TGRLMVQAVNS  105 (110)
T ss_dssp             EEEECTT-CCE--EE-CCCEEEECCSC
T ss_pred             EEEEECC-CeE--EE-EEEEEEECCCC
Confidence            9999998 663  33 55888887653

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.53  E-value=3.1e-14  Score=96.06  Aligned_cols=89  Identities=18%  Similarity=0.198  Sum_probs=69.4

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc---CccEEEeccCCCCCCcceEE
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS---SGDLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp---sG~L~I~nv~~~D~g~~Y~C   97 (129)
                      |...+++. .|.+|+++.|.|.+.+.+.   +.+.|++|+..|..    +.||.+..   ++.|.|.+++.+|+| .|+|
T Consensus        10 i~~~~~~~-~v~~G~~v~l~C~~~g~p~---p~i~W~k~~~~~~~----~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C   80 (114)
T 2cqv_A           10 IIQFPEDQ-KVRAGESVELFGKVTGTQP---ITCTWMKFRKQIQE----SEHMKVENSENGSKLTILAARQEHCG-CYTL   80 (114)
T ss_dssp             ESCCCCSE-EEETTCCEEEEEEEESSSS---CEEEEEESSSBCCC----SSSEEEEECSSEEEEEETTCCTTTCE-EEEE
T ss_pred             EEeCCCCe-EEeCCCeEEEEEEEEcCCC---CEEEEEECCEECcC----CCCEEEEEcCCEEEEEECCCChhcCE-EEEE
Confidence            33455566 8999999999999987664   67899999977743    46787764   567999999999997 9999


Q ss_pred             EeecccCCeEEecccceEEEEecCC
Q psy5694          98 RTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        98 ~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      .|.|.. |..  +. .+.|.|.++.
T Consensus        81 ~a~N~~-g~~--~~-~~~l~V~~~p  101 (114)
T 2cqv_A           81 LVENKL-GSR--QA-QVNLTVVDKP  101 (114)
T ss_dssp             EEECSS-CEE--EC-CEEEEEECSC
T ss_pred             EEEECC-CcE--EE-EEEEEEECCC
Confidence            999998 653  33 5688887543

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.53  E-value=4e-14  Score=110.87  Aligned_cols=107  Identities=44%  Similarity=0.773  Sum_probs=86.4

Q ss_pred             eeEEeeeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeee-cccCCCceEEEccCccEEEeccCCCCC-
Q psy5694          14 LPVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIY-LNTDTGGKYVVLSSGDLYVFNATPNDG-   91 (129)
Q Consensus        14 ~AVv~q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~-~~~~~~~ry~vlpsG~L~I~nv~~~D~-   91 (129)
                      +..+...|...+.+. .+.+|+++.|.|.+++.+++..+.+.|++++..+. +....++|+.+.++|.|.|.+++.+|+ 
T Consensus        99 ~v~~~p~~~~~~~~~-~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~  177 (388)
T 2v5m_A           99 RAVVAQYYEADVNKE-HVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGY  177 (388)
T ss_dssp             EEECCCCCCCBCCCE-EEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEECTTSCEEESSCCGGGGG
T ss_pred             EEccccccccCccce-eeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEEccCCcEEEecCCccccC
Confidence            333445566667777 89999999999999988776678899999985553 222346899999999999999999999 


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEecCC
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      | .|+|.+.|..+|+.+.+.....|.|.+|.
T Consensus       178 G-~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~  207 (388)
T 2v5m_A          178 K-SYQCRTKHRLTGETRLSATKGRLVITEPI  207 (388)
T ss_dssp             C-CEEEEEEETTTCCEEECSSCBCEEEECCC
T ss_pred             e-eEEEEeccCCCCceeeccccceEEEecCC
Confidence            6 99999999998888777656789998764

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.53  E-value=3.8e-14  Score=92.60  Aligned_cols=88  Identities=18%  Similarity=0.243  Sum_probs=67.3

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEc--cCc--cEEEeccCCCCCCcce
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL--SSG--DLYVFNATPNDGYKSY   95 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl--psG--~L~I~nv~~~D~g~~Y   95 (129)
                      .|...+.+. .+..|+++.|.|.+.+.|.   +.+.|++++..|..    +.++.+.  .+|  .|.|.+++.+|+| .|
T Consensus         7 ~~~~~~~~~-~v~~G~~v~l~C~~~g~p~---p~v~W~k~g~~~~~----~~~~~~~~~~~~~~~L~i~~v~~~D~G-~Y   77 (99)
T 1g1c_A            7 KIFERIQSQ-TVGQGSDAHFRVRVVGKPD---PECEWYKNGVKIER----SDRIYWYWPEDNVCELVIRDVTGEDSA-SI   77 (99)
T ss_dssp             EEEECCCCE-EEETTSCEEEEEEEEEESC---CEEEEEETTEECCC----CSSEEEEEEETTEEEEEECSCCGGGCE-EE
T ss_pred             ceEecCcce-EEcCCCcEEEEEEEEEeCC---CEEEEEECCEECCC----CCCEEEEEcCCCEEEEEECCCCcCCCE-EE
Confidence            355566677 8999999999999987663   57899999987743    3455442  233  6999999999997 99


Q ss_pred             EEEeecccCCeEEecccceEEEEec
Q psy5694          96 RCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        96 ~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      +|.|.|.. |+...   .+.|.|..
T Consensus        78 ~C~a~N~~-g~~~~---~~~l~V~~   98 (99)
T 1g1c_A           78 MVKAINIA-GETSS---HAFLLVQA   98 (99)
T ss_dssp             EEEEEETT-EEEEE---EEEEEEEC
T ss_pred             EEEEEECC-CcEEE---EEEEEEec
Confidence            99999997 66433   45888865

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.53  E-value=4.3e-14  Score=92.65  Aligned_cols=86  Identities=27%  Similarity=0.414  Sum_probs=68.1

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCC-CCCceeEeEEeecceeeecccCCCceEEE-ccCc--cEEEeccCCCCCCcceEEEe
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSY-MSEYIIVTSWIQDDVNIYLNTDTGGKYVV-LSSG--DLYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~~~i~~~~~~~~ry~v-lpsG--~L~I~nv~~~D~g~~Y~C~a   99 (129)
                      .+.+. .+.+|.++.|.|.+.+. |.   +.+.|++++..|.    .+.||.+ ..+|  .|.|.+++.+|.| .|+|.|
T Consensus         7 ~~~~~-~v~~G~~v~l~C~~~g~~p~---~~v~W~~~~~~~~----~~~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~a   77 (97)
T 2bk8_A            7 QIMHA-VGEEGGHVKYVCKIENYDQS---TQVTWYFGVRQLE----NSEKYEITYEDGVAILYVKDITKLDDG-TYRCKV   77 (97)
T ss_dssp             CCCCE-EECTTCCEEEEEEEESCCTT---CEEEEEETTEECC----SSSSEEEEEETTEEEEEECSCCGGGCE-EEEEEE
T ss_pred             cCcCE-EEcCCCcEEEEEEEeccCCC---CEEEEEECCEECc----CCCCEEEEEcCCeEEEEEecCChhhCe-EEEEEE
Confidence            34555 88999999999999876 53   5789999998774    3467776 3566  8999999999997 999999


Q ss_pred             ecccCCeEEecccceEEEEecCC
Q psy5694         100 VNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus       100 ~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      .|.. |+...   .+.|.|.+..
T Consensus        78 ~n~~-g~~~~---~~~l~V~~~~   96 (97)
T 2bk8_A           78 VNDY-GEDSS---YAELFVKGVR   96 (97)
T ss_dssp             ECSS-CEEEE---EEEEEETTTC
T ss_pred             ECCC-CeEeE---EEEEEEEecC
Confidence            9998 66433   4588888653

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.52  E-value=3.1e-14  Score=95.80  Aligned_cols=93  Identities=15%  Similarity=0.174  Sum_probs=66.1

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEc---------cCccEEEeccCCCCC
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL---------SSGDLYVFNATPNDG   91 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl---------psG~L~I~nv~~~D~   91 (129)
                      |...+++. .|.+|++|.|.|.+.+.|..-.+.+.|++++..... ...+.+|.+.         .++.|.|+||+.+|+
T Consensus         7 f~~~p~~~-~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   84 (108)
T 3cx2_A            7 FVMRPQDG-EVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLS-SKVGQHLQLHDSYDRASKVYLFELHITDAQPAFT   84 (108)
T ss_dssp             CSBCCCCE-EEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGG-GGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGC
T ss_pred             EEeCCCcE-EEeCCCCEEEEEEECCCccCCCcEEEEccCCccccc-ccCCceEEEeeEEecccccceEEEEEecCCCccC
Confidence            45566666 899999999999998766311267999998722211 1123456543         257899999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEec
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      | .|+|.|.|.. |+.  +. .+.|.|.+
T Consensus        85 G-~Y~C~a~N~~-G~~--~~-~~~L~V~~  108 (108)
T 3cx2_A           85 G-SYRCEVSTKD-KFD--CS-NFNLTVHE  108 (108)
T ss_dssp             E-EEEEEEECSS-CEE--EE-EEEEEEEC
T ss_pred             E-EEEEEEecCC-Cce--EE-EEEEEEeC
Confidence            7 9999999998 663  33 55888864

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=3.5e-14  Score=94.62  Aligned_cols=93  Identities=20%  Similarity=0.310  Sum_probs=70.0

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc--cEEEeccCCCCCCcceEE
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG--DLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG--~L~I~nv~~~D~g~~Y~C   97 (129)
                      .|...+.+. .+.+|+++.|.|.+.+.+.   +.+.|++++..|...  ...++....+|  .|.|.+++.+|+| .|+|
T Consensus        11 ~i~~~~~~~-~v~~G~~v~l~C~~~g~p~---p~v~W~~~g~~~~~~--~~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C   83 (110)
T 2dm3_A           11 HFLQAPGDL-TVQEGKLCRMDCKVSGLPT---PDLSWQLDGKPVRPD--SAHKMLVRENGVHSLIIEPVTSRDAG-IYTC   83 (110)
T ss_dssp             EEEECCCEE-EEESSSCBCCEEEEECSSC---CEEECBBSSSBCCCC--SSEEEEECTTSCEEEEESSCCGGGCS-BBCE
T ss_pred             cEEeCCCcE-EEeCCCEEEEEEEEEEcCC---CEEEEEECCEECCCC--CceEEEEecCCeEEEEEeeCCcccCE-EEEE
Confidence            344556666 8999999999999987664   579999999776432  22233344455  7999999999998 9999


Q ss_pred             EeecccCCeEEecccceEEEEecCCC
Q psy5694          98 RTVNKITGESQASVFQTRLSITGKLK  123 (129)
Q Consensus        98 ~a~N~ltge~k~S~~~~~L~V~ep~~  123 (129)
                      .|.|.. |+.  +. .+.|.|.++..
T Consensus        84 ~a~n~~-g~~--~~-~~~l~V~~~p~  105 (110)
T 2dm3_A           84 IATNRA-GQN--SF-SLELVVAAKES  105 (110)
T ss_dssp             EEECSS-CEE--EE-CCEEEEECCCC
T ss_pred             EEECCC-CEE--EE-EEEEEEeCCCC
Confidence            999998 663  33 56899987654

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.52  E-value=4.6e-14  Score=91.97  Aligned_cols=87  Identities=21%  Similarity=0.288  Sum_probs=69.0

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc---cEEEeccCCCCCCcceEE
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG---~L~I~nv~~~D~g~~Y~C   97 (129)
                      +...+.+. .+..|+++.|.|.+.+.+.   +.+.|++++..|.    .++||.+..++   .|.|.+++.+|+| .|+|
T Consensus         9 i~~~~~~~-~v~~G~~~~l~C~~~g~p~---p~v~W~~~g~~~~----~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C   79 (99)
T 3puc_A            9 IVTGLQDT-TVSSDSVAKFAVKATGEPR---PTAIWTKDGKAIT----QGGKYKLSEDKGGFFLEIHKTDTSDSG-LYTC   79 (99)
T ss_dssp             EEECCCCE-EEESSSCEEEEEEEEEESC---CEEEEEETTEECC----SSSSEEEEEETTEEEEEECSCCGGGCE-EEEE
T ss_pred             EEecCccE-EEeCCCcEEEEEEEEecCC---CEEEEEECCEECc----CCCCEEEEEeCCEEEEEECCCCcccCE-EEEE
Confidence            44556666 8999999999999977664   5789999997774    35788887655   5999999999997 9999


Q ss_pred             EeecccCCeEEecccceEEEEec
Q psy5694          98 RTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        98 ~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      .|.|.. |..  +. .+.|.|+.
T Consensus        80 ~a~n~~-g~~--~~-~~~l~V~~   98 (99)
T 3puc_A           80 TVKNSA-GSV--SS-SCKLTIKA   98 (99)
T ss_dssp             EEEETT-EEE--EE-EEEEEEEC
T ss_pred             EEEeCC-CcE--eE-EEEEEEEe
Confidence            999998 553  33 45777753

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.50  E-value=5.5e-14  Score=93.14  Aligned_cols=92  Identities=14%  Similarity=0.274  Sum_probs=63.1

Q ss_pred             eeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEE-ccCccEEEeccCCCCCCcceEE
Q psy5694          19 QKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV-LSSGDLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        19 q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~v-lpsG~L~I~nv~~~D~g~~Y~C   97 (129)
                      ..+...+.+. .+..|.++.|.|.+.+.+.   +.+.|++++..+..    +.++.+ ..++.|.|.+++.+|+| .|+|
T Consensus        11 P~~~~~~~~~-~v~~G~~v~l~C~~~g~p~---p~i~W~~~~~~~~~----~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C   81 (108)
T 3kvq_A           11 PTITGNLENQ-TTSIGESIEVSCTASGNPP---PQIMWFKDNETLVE----DSGIVLKDGNRNLTIRRVRKEDEG-LYTC   81 (108)
T ss_dssp             CCCBSCCCCE-EEETTCCEEEECBCC-------CCEEEEESSSBCCC----BTTEEEETTTTEEEECSCCGGGCE-EEEE
T ss_pred             CceecCCCCe-EEeCCCeEEEEEECcCcCC---CeEEEEECCeEccc----CCCeEEeCCCcEEEEeecCcccCE-EEEE
Confidence            4455566666 8999999999999987664   46899999977643    344444 45788999999999997 9999


Q ss_pred             EeecccCCeEEecccceEEEEecCCC
Q psy5694          98 RTVNKITGESQASVFQTRLSITGKLK  123 (129)
Q Consensus        98 ~a~N~ltge~k~S~~~~~L~V~ep~~  123 (129)
                      .|.|.. |....   .+.|.|.++..
T Consensus        82 ~a~n~~-g~~~~---~~~l~V~~~~~  103 (108)
T 3kvq_A           82 QACSVL-GCAKV---EAFFIIEGAQE  103 (108)
T ss_dssp             EEC-----CEEE---EEEEEEEC---
T ss_pred             EEEeCC-CceEE---EEEEEEeCCCc
Confidence            999998 55333   45888887653

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=6.9e-14  Score=91.77  Aligned_cols=88  Identities=18%  Similarity=0.328  Sum_probs=66.5

Q ss_pred             eeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEE
Q psy5694          19 QKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCR   98 (129)
Q Consensus        19 q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~   98 (129)
                      ..+...+.+. .+.+|.++.|.|.+.+.|.   +.+.|++++..|..    +.+.....++.|.|.+++.+|+| .|+|.
T Consensus        12 P~~~~~~~~~-~v~~G~~v~l~C~~~g~p~---p~v~W~~~g~~~~~----~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~   82 (99)
T 2yr3_A           12 PSFSSVLKDC-AVIEGQDFVLQCSVRGTPV---PRITWLLNGQPIQY----ARSTCEAGVAELHIQDALPEDHG-TYTCL   82 (99)
T ss_dssp             EEEEECCCCE-EECTTCCEEEECEEEEESC---CCCEEEESSSBCSS----CCCEEETTEEEEEECSCCTTCCB-CEEEE
T ss_pred             CceeecCCCC-EEeCCCeEEEEEEEeeeCC---CeEEEEECCEECcc----cceEeeCCeEEEEECCCChhhCE-EEEEE
Confidence            3455566666 8999999999999977664   56899999977642    23444445678999999999997 99999


Q ss_pred             eecccCCeEEecccceEEEEe
Q psy5694          99 TVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        99 a~N~ltge~k~S~~~~~L~V~  119 (129)
                      |.|.. |+...   .+.|.|+
T Consensus        83 a~N~~-g~~~~---~~~l~V~   99 (99)
T 2yr3_A           83 AENAL-GQVSC---SAWVTVH   99 (99)
T ss_dssp             EECSS-CEEEE---ECCEEEC
T ss_pred             EEECC-CeEEE---EEEEEEC
Confidence            99998 66332   3466663

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.49  E-value=1.1e-13  Score=91.99  Aligned_cols=87  Identities=17%  Similarity=0.249  Sum_probs=67.4

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccC---ccEEEeccCCCCCCcceEE
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS---GDLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlps---G~L~I~nv~~~D~g~~Y~C   97 (129)
                      |...+++. .|.+|+++.|.|.+.+ ++   +.+.|++|+..|...  ...||.+..+   +.|.|.+++.+|+| .|+|
T Consensus        10 ~~~~~~~~-~v~~G~~v~l~C~~~~-~~---~~v~W~k~g~~l~~~--~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C   81 (103)
T 1x44_A           10 VTKQLEDT-TAYCGERVELECEVSE-DD---ANVKWFKNGEEIIPG--PKSRYRIRVEGKKHILIIEGATKADAA-EYSV   81 (103)
T ss_dssp             CSBCCCCE-EEETTEEEEEEEECSS-SS---CCCEEEETTEECCCS--TTCSEEEEEETTEEEEEEEEECTTTCS-EEEE
T ss_pred             eeccCCCE-EEECCCCEEEEEEecC-CC---CeEEEEECCEECCCC--CceEEEEEEcCCEEEEEECCCCcccCE-EEEE
Confidence            44556666 8999999999999965 32   578999999887542  1118888765   56999999999998 9999


Q ss_pred             EeecccCCeEEecccceEEEEecCCC
Q psy5694          98 RTVNKITGESQASVFQTRLSITGKLK  123 (129)
Q Consensus        98 ~a~N~ltge~k~S~~~~~L~V~ep~~  123 (129)
                      .|.|.       +. .+.|.|.++..
T Consensus        82 ~a~n~-------~~-~~~l~V~~~p~   99 (103)
T 1x44_A           82 MTTGG-------QS-SAKLSVDLKSG   99 (103)
T ss_dssp             EETTE-------EE-EEEEEEECCCS
T ss_pred             EECCC-------cE-EEEEEEeCCCC
Confidence            99981       33 66899987654

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.49  E-value=1e-13  Score=91.15  Aligned_cols=92  Identities=15%  Similarity=0.258  Sum_probs=70.3

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecce-eeecc---cCCCceEEEc----cCccEEEeccCCCCC
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDV-NIYLN---TDTGGKYVVL----SSGDLYVFNATPNDG   91 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~-~i~~~---~~~~~ry~vl----psG~L~I~nv~~~D~   91 (129)
                      .|...+++. .|.+|++|.|.|.+.+.+   .+.+.|.+++. .+...   ...++||.+.    .++.|.|.|++.+|+
T Consensus         8 ~~~~~~~~~-~v~~G~~v~L~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~   83 (108)
T 3m45_A            8 GQFPLTQNV-TVVEGGTAILTCRVDQND---NTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDE   83 (108)
T ss_dssp             CCCEECCCE-EEETTSCEEEEEEESSCS---SCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGC
T ss_pred             CccccCCee-EEEeCCcEEEEeEEcCCC---ccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHC
Confidence            466677777 999999999999998766   35689999874 44321   1134688875    467899999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEecC
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      | .|.|.+.| . |..  +. .+.|.|.+|
T Consensus        84 G-~Y~C~~~n-~-~~~--~~-~~~L~V~~~  107 (108)
T 3m45_A           84 G-QYTCSLFT-M-PVK--TS-KAYLTVLGV  107 (108)
T ss_dssp             E-EEEEEECS-S-SCE--EE-EEEEEEECC
T ss_pred             e-EEEEEEEc-C-CCc--EE-EEEEEEEcC
Confidence            7 99999999 5 553  33 568888875

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=2.8e-14  Score=94.58  Aligned_cols=87  Identities=14%  Similarity=0.252  Sum_probs=66.9

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCcc---EEEeccCCCCCCcceEE
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVFNATPNDGYKSYRC   97 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~---L~I~nv~~~D~g~~Y~C   97 (129)
                      |...+++. .|.+|++|.|.|.+.+.+    +.+.|++|+..|.+......||.+..+|.   |.|.+++.+|+| .|+|
T Consensus        11 ~~~~~~~~-~v~~G~~v~l~C~~~~~~----~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C   84 (101)
T 2edk_A           11 IVTPLEDQ-QVFVGDRVEMAVEVSEEG----AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRG-RYQV   84 (101)
T ss_dssp             EEECCCCE-EEESSCCCBCCEEESCSS----CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCS-BEEE
T ss_pred             EEecCCce-EEcCCCCEEEEEEEeCCC----CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCE-EEEE
Confidence            44556666 899999999999997655    45899999987754311112888877764   999999999998 9999


Q ss_pred             EeecccCCeEEecccceEEEEecC
Q psy5694          98 RTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        98 ~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      .|.|.       +. .+.|.|.++
T Consensus        85 ~a~n~-------~~-~~~l~V~~~  100 (101)
T 2edk_A           85 ITNGG-------QC-EAELIVEEK  100 (101)
T ss_dssp             ECSSC-------EE-CCBEEEECC
T ss_pred             EEcCC-------cE-EEEEEEeCC
Confidence            99982       22 568999876

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.47  E-value=2.1e-13  Score=98.83  Aligned_cols=89  Identities=19%  Similarity=0.192  Sum_probs=67.1

Q ss_pred             eEEEeCCeEEEEee-CCCCCCCceeEeEEeecceeeec------ccCCCceEEEccCccEEEeccCCCCCCcceEEEeec
Q psy5694          29 HNVILGNTAVLRCQ-IPSYMSEYIIVTSWIQDDVNIYL------NTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVN  101 (129)
Q Consensus        29 ~~V~~GntAvL~C~-vp~~~~~~v~v~sW~~d~~~i~~------~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N  101 (129)
                      +.+.+|+++.|.|. ++..  ...+.+.|.+++..|..      ....++||.+.++|.|.|.||+.+|+| .|+|.|.|
T Consensus         6 v~~~~G~~v~L~c~~~~~~--~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G-~Y~C~~~n   82 (176)
T 1hng_A            6 VWGALGHGINLNIPNFQMT--DDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSG-TYNVTVYS   82 (176)
T ss_dssp             EEEETTSCEEECCTTCCCC--TTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCE-EEEEEEEE
T ss_pred             EEEEcCCcEEEcCCCCCcc--cccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCE-EEEEEEEe
Confidence            37899999999994 3322  22578999999855420      012368999999999999999999997 99999999


Q ss_pred             ccCCeEEecccceEEEEecCC
Q psy5694         102 KITGESQASVFQTRLSITGKL  122 (129)
Q Consensus       102 ~ltge~k~S~~~~~L~V~ep~  122 (129)
                      .. |+...+. ...|.|.++.
T Consensus        83 ~~-g~~~~~~-~~~l~V~~~~  101 (176)
T 1hng_A           83 TN-GTRILNK-ALDLRILEMV  101 (176)
T ss_dssp             TT-CCEEEEE-EEEEEEECCC
T ss_pred             CC-CCEEEEE-EEEEEEeCCC
Confidence            87 6543444 5678887653

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.47  E-value=7.2e-14  Score=91.83  Aligned_cols=82  Identities=20%  Similarity=0.366  Sum_probs=64.0

Q ss_pred             eEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeec
Q psy5694          22 EINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVN  101 (129)
Q Consensus        22 ~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N  101 (129)
                      ...+++. .+.+|+++.|.|.+.+.+    +.+.|++|+..|..    ++|+.+. ++.|.|.+++.+|+| .|+|.|.|
T Consensus        13 ~~~~~~~-~v~~G~~v~l~C~~~g~p----p~i~W~k~g~~~~~----~~~~~~~-~~~L~i~~~~~~D~G-~Y~C~a~n   81 (95)
T 2ckn_A           13 PVEVESL-LVHPGDLLQLRCRLRDDV----QSINWLRDGVQLVE----SNRTRIT-GEEVEVRDSIPADSG-LYACVTSS   81 (95)
T ss_dssp             TTBBCCE-EECTTSCEEEECCEESSC----CEEEEEBTTBCCCC----CSSEEEC-SSEEEESSCCGGGSE-EEEEEEEE
T ss_pred             EcCcceE-EEcCCCeEEEEEECCCCC----CceEEEECCEecCC----CCCEEEe-CCEEEECCCChHHCE-EEEEEecc
Confidence            3345555 889999999999998765    36899999977743    4677665 899999999999997 99999999


Q ss_pred             ccCCeEEecccceEEEE
Q psy5694         102 KITGESQASVFQTRLSI  118 (129)
Q Consensus       102 ~ltge~k~S~~~~~L~V  118 (129)
                      .. |+.  +. ...|.|
T Consensus        82 ~~-g~~--~~-~~~l~V   94 (95)
T 2ckn_A           82 PS-GSD--TT-YFSVNV   94 (95)
T ss_dssp             TT-EEE--EE-EEEEEE
T ss_pred             CC-CcE--EE-EEEEEE
Confidence            87 553  22 346655

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.46  E-value=1.9e-13  Score=97.30  Aligned_cols=94  Identities=20%  Similarity=0.394  Sum_probs=71.2

Q ss_pred             eeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEc--cCc--cEEEeccCCCCCCcc
Q psy5694          19 QKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL--SSG--DLYVFNATPNDGYKS   94 (129)
Q Consensus        19 q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl--psG--~L~I~nv~~~D~g~~   94 (129)
                      ..|...+.+. .+..|.++.|.|.+.+.|.   +.+.|++++..|.    .+.||.+.  .+|  .|.|.+++.+|.| .
T Consensus        42 P~~~~~~~~~-~v~~G~~v~L~C~~~g~P~---p~v~W~k~g~~~~----~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~  112 (154)
T 1fhg_A           42 PYFTKTILDM-EVVEGSAARFDCKVEGYPD---PEVMWFKDDNPVK----ESRHFQIDYDEEGNCSLTISEVCGDDDA-K  112 (154)
T ss_dssp             EEEEECCCCE-EEETTSCEEEEEEEEEESC---CEEEEEETTEECC----CSSSEEEEECTTCEEEEEESSCCGGGCE-E
T ss_pred             CeEEccCCcE-EEeCCCeEEEEEEEEEecC---CEEEEEECCEECC----CCCcEEEEECCCCeEEEEECCCChhcCE-E
Confidence            4455566666 8999999999999977664   5799999998774    34677765  333  8999999999997 9


Q ss_pred             eEEEeecccCCeEEecccceEEEEecCCCCC
Q psy5694          95 YRCRTVNKITGESQASVFQTRLSITGKLKSL  125 (129)
Q Consensus        95 Y~C~a~N~ltge~k~S~~~~~L~V~ep~~~~  125 (129)
                      |+|.|.|.+ |..  +. .+.|.|..+....
T Consensus       113 Y~C~a~N~~-G~~--~~-~~~l~V~~~p~~~  139 (154)
T 1fhg_A          113 YTCKAVNSL-GEA--TC-TAELLVETMGKEG  139 (154)
T ss_dssp             EEEEEEETT-EEE--EE-EEEEEEECC----
T ss_pred             EEEEEEECC-CeE--EE-EEEEEEeCcCcCC
Confidence            999999998 663  33 5588998765543

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=2e-13  Score=92.71  Aligned_cols=80  Identities=13%  Similarity=0.118  Sum_probs=63.4

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc-C--ccEEEeccCCCCCCcceEEEeecccCCe
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS-S--GDLYVFNATPNDGYKSYRCRTVNKITGE  106 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp-s--G~L~I~nv~~~D~g~~Y~C~a~N~ltge  106 (129)
                      .+.+|+++.|.|.+.+.|.   +.+.|++|+..|.     ++|+.+.. +  +.|.|.+++.+|.| .|+|.|.|.. |+
T Consensus        35 ~v~~G~~~~l~C~~~g~P~---p~i~W~k~g~~l~-----~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~C~a~N~~-G~  104 (118)
T 2e7c_A           35 IRKVGEQLNLVVPFQGKPR---PQVVWTKGGAPLD-----TSRVHVRTSDFDTVFFVRQAARSDSG-EYELSVQIEN-MK  104 (118)
T ss_dssp             EEESSSCEEEEEEEEEESC---CEEEEEETTEECC-----CSSCEEEECSSEEEEEESSCCTTTCE-EEEEEEECSS-CE
T ss_pred             EEECCCEEEEEEEEccCCC---CEEEEEECCEECC-----CCcEEEEECCCeEEEEECCCChhcCE-EEEEEEEeCC-Ce
Confidence            8899999999999987764   5789999998773     24555442 3  34999999999997 9999999998 65


Q ss_pred             EEecccceEEEEecCC
Q psy5694         107 SQASVFQTRLSITGKL  122 (129)
Q Consensus       107 ~k~S~~~~~L~V~ep~  122 (129)
                        .+. ...|.|.+++
T Consensus       105 --~~~-~~~l~V~~~P  117 (118)
T 2e7c_A          105 --DTA-TIRIRVVEKA  117 (118)
T ss_dssp             --ECC-EEEEEEECCC
T ss_pred             --EEE-EEEEEEEcCC
Confidence              244 6688888765

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.46  E-value=4.6e-14  Score=95.20  Aligned_cols=87  Identities=15%  Similarity=0.221  Sum_probs=69.3

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc---CccEEEeccCCCCCCcceE
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS---SGDLYVFNATPNDGYKSYR   96 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp---sG~L~I~nv~~~D~g~~Y~   96 (129)
                      .|...+++. .|.+|.++.|.|.+.+.|.   +.+.|++++..|.    .+.|+.+..   ++.|.|.+++.+|+| .|+
T Consensus        16 ~i~~~p~~~-~v~~G~~v~L~C~~~g~p~---p~v~W~k~g~~l~----~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~   86 (106)
T 1nct_A           16 RILTKPRSM-TVYEGESARFSCDTDGEPV---PTVTWLRKGQVLS----TSARHQVTTTKYKSTFEISSVQASDEG-NYS   86 (106)
T ss_dssp             EEEECCCCE-EESSSSCEECCEEEECSSC---CBCCBCSSSSCCT----TCSSEEEEECSSEEEEEECCCCSSCCS-EEE
T ss_pred             EEEECCCCE-EEeCCCcEEEEEEEEEcCC---CEEEEEECCEECC----CCCCEEEEECCCEEEEEECcCCchhCE-EEE
Confidence            455667777 8999999999999987764   5789999997764    356787765   578999999999998 999


Q ss_pred             EEeecccCCeEEecccceEEEEe
Q psy5694          97 CRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        97 C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      |.|.|.. |..  +. .+.|.|.
T Consensus        87 C~a~N~~-G~~--~~-~~~l~V~  105 (106)
T 1nct_A           87 VVVENSE-GKQ--EA-EFTLTIQ  105 (106)
T ss_dssp             ECCBCSS-CBC--CE-EEEEEEC
T ss_pred             EEEEeCC-CeE--EE-EEEEEEE
Confidence            9999998 552  33 5577775

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=1.3e-13  Score=91.21  Aligned_cols=85  Identities=22%  Similarity=0.363  Sum_probs=67.7

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCcc---EEEeccCCCCCCcceEE
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVFNATPNDGYKSYRC   97 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~---L~I~nv~~~D~g~~Y~C   97 (129)
                      |...+.+. .+.+|+++.|.|.+.+ +.   +.+.|++|+..|..    +.||.+..+|.   |.|.+++.+|+| .|+|
T Consensus        11 ~~~~~~~~-~v~~G~~v~l~C~~~~-~~---~~v~W~k~g~~~~~----~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C   80 (103)
T 2edf_A           11 IIKPLEDQ-WVAPGEDVELRCELSR-AG---TPVHWLKDRKAIRK----SQKYDVVCEGTMAMLVIRGASLKDAG-EYTC   80 (103)
T ss_dssp             EEECCCCE-EECTTSCEEECCEESS-SS---CCCCEEESSCBCCC----SSSEEEEEETTEEEEEESSCCTTTCS-EEEE
T ss_pred             EEecCCcc-EEcCCCCEEEEEEEeC-CC---CcEEEEECCEEccC----CCCEEEEECCCEEEEEECCCCcccCE-EEEE
Confidence            44455666 8999999999999975 32   45899999977743    46898888885   999999999998 9999


Q ss_pred             EeecccCCeEEecccceEEEEecCCC
Q psy5694          98 RTVNKITGESQASVFQTRLSITGKLK  123 (129)
Q Consensus        98 ~a~N~ltge~k~S~~~~~L~V~ep~~  123 (129)
                      .|.|.       +. .+.|.|.++..
T Consensus        81 ~a~n~-------~~-~~~l~V~~~p~   98 (103)
T 2edf_A           81 EVEAS-------KS-TASLHVEEKAS   98 (103)
T ss_dssp             ECSSC-------EE-EEEEEECCCSS
T ss_pred             EEccC-------Cc-EEEEEEeCCCC
Confidence            99992       33 66899987654

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.46  E-value=2.4e-13  Score=89.25  Aligned_cols=82  Identities=23%  Similarity=0.328  Sum_probs=63.7

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc---cEEEeccCCCCCCcceEE
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG---~L~I~nv~~~D~g~~Y~C   97 (129)
                      |...+.+. .|.+|++|.|.|.+ +.+   .+.+.|++|+..|.+    +.||.+..+|   .|.|.+++.+|+| .|+|
T Consensus        11 ~~~~~~~~-~v~~G~~v~l~C~~-~~p---~~~v~W~k~~~~l~~----~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C   80 (95)
T 2k1m_A           11 FSKKPRSV-EVAAGSPAVFEAET-ERA---GVKVRWQRGGSDISA----SNKYGLATEGTRHTLTVREVGPADQG-SYAV   80 (95)
T ss_dssp             CSBCCCCE-EEETTSCEEEEEEC-SSS---SCCCEEECSSSEECS----STTCEEEEETTEEEEEESSCCTTCCS-EEEE
T ss_pred             eEeCCCcE-EEeCCCcEEEEEEe-CCC---CCeEEEEECCEECCC----CCcEEEEEcCCEEEEEEcCCCcccCE-EEEE
Confidence            44555666 89999999999999 444   256899999977743    4688887766   4999999999998 9999


Q ss_pred             EeecccCCeEEecccceEEEEec
Q psy5694          98 RTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        98 ~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      .|     |+.  +. .+.|.|.|
T Consensus        81 ~a-----g~~--~~-~~~l~V~e   95 (95)
T 2k1m_A           81 IA-----GSS--KV-KFDLKVIE   95 (95)
T ss_dssp             EE-----TTE--EE-EEEEEEEC
T ss_pred             EE-----CCc--eE-EEEEEEeC
Confidence            99     332  22 46888875

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=1.7e-13  Score=90.80  Aligned_cols=86  Identities=21%  Similarity=0.361  Sum_probs=67.6

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      .+.+. .+..|.++.|.|.+.+.+    +.+.|++++..|..    +.|+.+. ++.|.|.+++.+|.| .|+|.|.|..
T Consensus         9 ~p~~~-~v~~G~~v~L~C~~~g~p----p~i~W~k~g~~~~~----~~~~~~~-~~~L~i~~v~~~D~G-~Y~C~a~n~~   77 (99)
T 2cr3_A            9 EVESF-LVHPGDLLQLRCRLRDDV----QSINWLRDGVQLAE----SNRTRIT-GEEVEVQDSVPADSG-LYACVTSSPS   77 (99)
T ss_dssp             CEEEC-CBCTTSCEEEECCCCSSC----CEEEEEESSSBCCC----CSSEEEC-SSEEEETTCCTTTCE-EEEEEEEETT
T ss_pred             CCcCe-EEeCCCcEEEEEEecCCC----CeEEEEECCEECCC----CCcEEEE-CCEEEEccCCHHHCE-EEEEEEEeCC
Confidence            45555 789999999999998754    36899999977643    3577765 789999999999997 9999999987


Q ss_pred             CCeEEecccceEEEEecCCCC
Q psy5694         104 TGESQASVFQTRLSITGKLKS  124 (129)
Q Consensus       104 tge~k~S~~~~~L~V~ep~~~  124 (129)
                       |+.  +. ...|.|.+..++
T Consensus        78 -g~~--~~-~~~l~V~~~~~s   94 (99)
T 2cr3_A           78 -GSD--TT-YFSVNVSDALPS   94 (99)
T ss_dssp             -EEE--EE-EEEECBCSCCSC
T ss_pred             -ceE--EE-EEEEEEecCCCC
Confidence             553  33 457788776554

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.45  E-value=1.1e-14  Score=99.54  Aligned_cols=94  Identities=22%  Similarity=0.285  Sum_probs=73.3

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEc----cC---ccEEEeccCCCCC-CcceE
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL----SS---GDLYVFNATPNDG-YKSYR   96 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl----ps---G~L~I~nv~~~D~-g~~Y~   96 (129)
                      +.+. .+.+|++|.|.|.+.+.|+.  ..+.|.+++..|...  .++||.+.    .+   ..|.|.+++.+|. | .|.
T Consensus        20 ~~~~-~~~~G~~v~l~C~~~g~P~p--~~i~W~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~~G-~Y~   93 (122)
T 2cry_A           20 TQTQ-HALHGEKGQIKCFIRSTPPP--DRIAWSWKENVLESG--TSGRYTVETISTEEGVISTLTISNIVRADFQT-IYN   93 (122)
T ss_dssp             ECCC-CCCTTSCCCCCEEECCSSCC--SEEEEESSSCEECSE--EETTEEEEEEEETTEEEEEEECTTCCHHHHHS-CEE
T ss_pred             CCeE-EEecCCCEEEEEEEeecCCC--cEeEEEECCEEccCC--CCCCEEEEEecCCCceEEEEEEcCCChhhCCc-eEE
Confidence            4555 78999999999999988752  138999999777431  24688773    22   2799999999999 7 999


Q ss_pred             EEeecccCCeEEecccceEEEEecCCCCCCCC
Q psy5694          97 CRTVNKITGESQASVFQTRLSITGKLKSLCTS  128 (129)
Q Consensus        97 C~a~N~ltge~k~S~~~~~L~V~ep~~~~~~~  128 (129)
                      |.|.|.+ |+..  . .+.|.|.++..+.|.|
T Consensus        94 C~a~N~~-G~~~--~-~~~l~V~~~~~~~pss  121 (122)
T 2cry_A           94 CTAWNSF-GSDT--E-IIRLKEQGSEMSGPSS  121 (122)
T ss_dssp             EEEECSS-CEEE--E-EECCCCSCSSCCCCCC
T ss_pred             EEEECCC-CeEE--E-EEEEEECCCCCCCCCC
Confidence            9999999 6643  3 5589999988888765

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=1.4e-13  Score=90.42  Aligned_cols=85  Identities=26%  Similarity=0.386  Sum_probs=66.9

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEe
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a   99 (129)
                      .+...+++. .+..|.++.|.|.+.+.+.   +.+.|++|+..|...          .++.|.|.+++.+|+| .|+|.|
T Consensus        12 ~i~~~p~~~-~v~~G~~v~l~C~~~g~p~---~~v~W~k~~~~~~~~----------~~~~L~i~~v~~~d~G-~Y~C~a   76 (96)
T 2ens_A           12 QLVVEPEGG-AVAPGGTVTLTCEVPAQPS---PQIHWMKDGVPLPLP----------PSPVLILPEIGPQDQG-TYSCVA   76 (96)
T ss_dssp             CCEEESTTS-EECTTCEEEEECCCSSCSS---CCCCCEESSSBCSSC----------CCSEEEEESCCTTTCE-EEECEE
T ss_pred             EEEECCCCC-EEcCCCeEEEEEEEccCCC---CEEEEEECCEECcCC----------CCCEEEECCCCcccCE-EEEEEE
Confidence            355666677 8999999999999987664   568999998666321          3678999999999997 999999


Q ss_pred             ecccCCeEEecccceEEEEecC
Q psy5694         100 VNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus       100 ~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      .|..++. ..|. ...|.|.++
T Consensus        77 ~n~~~~~-~~s~-~~~v~V~~~   96 (96)
T 2ens_A           77 THSSHGP-QESR-AVSISIIEP   96 (96)
T ss_dssp             CCSSCCC-EECC-CEEEEECCC
T ss_pred             EeCCCCc-EEEE-EEEEEEeCC
Confidence            9976454 4555 678888764

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=1.1e-13  Score=98.05  Aligned_cols=94  Identities=13%  Similarity=0.125  Sum_probs=69.4

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-eeeecccCCCceEEEc---------cCccEEEeccCCCC
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYVVL---------SSGDLYVFNATPND   90 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-~~i~~~~~~~~ry~vl---------psG~L~I~nv~~~D   90 (129)
                      |..++++. .|.+|+.|.|.|.+.+.+-...+.+.|+|+. ..+..  ..+.++.+-         .++.|.|+||+.+|
T Consensus        15 f~~~P~~v-~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   91 (118)
T 2edn_A           15 FLKKPDSV-SVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGS--KSGARFSFKESHNSASNVYTVELHIGKVVLGD   91 (118)
T ss_dssp             CSBCCCCC-EEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCC--STTSSCEEEEEECSSSCEEEEEEEESSCCTTT
T ss_pred             EEECCCCe-EEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCC--CCccEEEeccccccccccceEEEEEeeCChhh
Confidence            56677777 9999999999999865321114689999985 33321  123455442         25889999999999


Q ss_pred             CCcceEEEeecccCCeEEecccceEEEEecCC
Q psy5694          91 GYKSYRCRTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        91 ~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      +| .|+|.+.|.. |+  .|. .+.|.|.+|.
T Consensus        92 ~G-~Y~Cevsn~~-g~--~s~-~~~L~V~~~~  118 (118)
T 2edn_A           92 RG-YYRLEVKAKD-TC--DSC-GFNIDVEAPR  118 (118)
T ss_dssp             CS-CEEEEEECSS-CE--EEE-EECCEEECCC
T ss_pred             CE-EEEEEEEEcC-Cc--EEE-EEEEEEEcCC
Confidence            98 9999999998 54  354 6799999873

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=2.6e-13  Score=89.91  Aligned_cols=77  Identities=19%  Similarity=0.284  Sum_probs=63.1

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc---cEEEeccCCCCCCcceEEEeecccCCe
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGE  106 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG---~L~I~nv~~~D~g~~Y~C~a~N~ltge  106 (129)
                      .|.+|+++.|.|.+.+.+.   + +.|++|+..|..    +.||.+..+|   .|.|.+++.+|+| .|+|.|.|.    
T Consensus        21 ~v~~G~~v~l~C~~~~~p~---~-v~W~k~g~~~~~----~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~n~----   87 (104)
T 2e6p_A           21 TFTTSERVVLTCELSRVDF---P-ATWYKDGQKVEE----SELLVVKMDGRKHRLILPEAKVQDSG-EFECRTEGV----   87 (104)
T ss_dssp             EEESSSCEECCEECSSTTC---C-CEEEETTEECCC----BTTBEEEEETTEEEEEESSCCTTTCE-EEEEECSSC----
T ss_pred             EEeCCCcEEEEEEecCCCC---c-cEEeeCCEECCC----CCCEEEEeCCCEEEEEECCCChhhCE-EEEEEECCc----
Confidence            7899999999999987764   4 799999987743    4678777666   4999999999997 999999996    


Q ss_pred             EEecccceEEEEecCCC
Q psy5694         107 SQASVFQTRLSITGKLK  123 (129)
Q Consensus       107 ~k~S~~~~~L~V~ep~~  123 (129)
                         +. .+.|.|.++..
T Consensus        88 ---~~-~~~l~V~~~P~  100 (104)
T 2e6p_A           88 ---SA-FFGVTVQDPSG  100 (104)
T ss_dssp             ---CC-CEEEEEECCCC
T ss_pred             ---eE-EEEEEEcCCCC
Confidence               22 56899987753

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.44  E-value=6.1e-13  Score=87.95  Aligned_cols=87  Identities=25%  Similarity=0.452  Sum_probs=69.0

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCcc---EEEeccCCCCCCcceEE
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVFNATPNDGYKSYRC   97 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~---L~I~nv~~~D~g~~Y~C   97 (129)
                      |...+++. .|.+|+++.|.|.+.+.+.   + +.|++++..|.    .+.||.+..+|.   |.|.|++.+|+| .|+|
T Consensus        11 ~~~~~~~~-~v~~G~~v~l~C~~~~~p~---~-v~W~k~~~~l~----~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C   80 (103)
T 2e7b_A           11 FQEALKDL-EVLEGGAATLRCVLSSVAA---P-VKWCYGNNVLR----PGDKYSLRQEGAMLELVVRNLRPQDSG-RYSC   80 (103)
T ss_dssp             CTBCCCCE-EEESSSCEEEEEECSSCCC---S-CEEEESSSBCC----CSSSEEEEECSSEEEEEECSCCTTTCC-CEEE
T ss_pred             EEecCccE-EEECCCcEEEEEEEeCCCC---C-eEEEECCEECC----CCCcEEEEEcCCEEEEEEccCCcccCE-EEEE
Confidence            44456666 8999999999999987664   4 89999997774    357999988887   999999999998 9999


Q ss_pred             EeecccCCeEEecccceEEEEecCCCCC
Q psy5694          98 RTVNKITGESQASVFQTRLSITGKLKSL  125 (129)
Q Consensus        98 ~a~N~ltge~k~S~~~~~L~V~ep~~~~  125 (129)
                      .+     |+.  +. .+.|.|.+++...
T Consensus        81 ~~-----g~~--~~-~~~l~V~~~p~~~  100 (103)
T 2e7b_A           81 SF-----GDQ--TT-SATLTVTALPSGP  100 (103)
T ss_dssp             EC-----SSC--BC-CBCEEEECCCCCS
T ss_pred             EE-----CCc--EE-EEEEEEEeccccc
Confidence            82     442  33 5699999876543

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.43  E-value=9.4e-14  Score=92.90  Aligned_cols=64  Identities=19%  Similarity=0.406  Sum_probs=52.8

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc---cEEEeccCCCCCCcceEEEeecc
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG---~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      .+..|++++|.|.+.+ +.   +.+.|++|+..|.+    ++||.+..+|   .|.|.+++.+|+| .|+|.|.|.
T Consensus        17 ~~~~g~~v~l~C~v~~-p~---~~v~W~k~g~~i~~----~~~~~i~~~~~~~~L~I~~v~~~D~G-~Y~C~a~n~   83 (91)
T 2lvc_A           17 HAITSECVMLACEVDR-ED---APVRWYKDGQEVEE----SDFVVLENEGPHRRLVLPATQPSDGG-EFQCVAGDE   83 (91)
T ss_dssp             ECCTTCCEEEEEECSC-TT---SCCEEEETTSCCCC----CSSCEEEEETTEEEEEESSCCGGGCS-EEEEECSSC
T ss_pred             EEECCCcEEEEEEECC-CC---cEEEEEECCEEeee----eeeeeEEecCCeEEEEeCCCChhhcE-EEEEEEcce
Confidence            4568999999999854 42   45899999988853    5788888777   5999999999998 999999774

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.43  E-value=3.8e-13  Score=90.82  Aligned_cols=94  Identities=20%  Similarity=0.332  Sum_probs=69.3

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeeccc-CCCceEEEccCccEEEecc-----CCCCCCc
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT-DTGGKYVVLSSGDLYVFNA-----TPNDGYK   93 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~-~~~~ry~vlpsG~L~I~nv-----~~~D~g~   93 (129)
                      .+...+.+. .+..|+++.|.|.+.+.|.   +.+.|++++..|.... ....++.+.++|.|.|.++     +.+|.| 
T Consensus        11 ~i~~~p~~~-~v~~G~~v~L~C~~~g~P~---p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G-   85 (117)
T 2v9t_A           11 RIVEHPSDL-IVSKGEPATLNCKAEGRPT---PTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEG-   85 (117)
T ss_dssp             EEEECCCCE-EECTTCCEEECCEEEEESC---CEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCE-
T ss_pred             eeEcCCCCE-EEcCCCcEEEEEECCccCC---CeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCE-
Confidence            345556666 8999999999999977664   5699999997775431 1123566788999887754     789997 


Q ss_pred             ceEEEeecccCCeEEecccceEEEEecC
Q psy5694          94 SYRCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        94 ~Y~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      .|+|.|.|.+ |+. .+. .++|.+..+
T Consensus        86 ~Y~C~a~N~~-G~~-~s~-~~~l~~~~~  110 (117)
T 2v9t_A           86 VYVCVARNYL-GEA-VSH-DASLEVAAA  110 (117)
T ss_dssp             EEEEEEEETT-EEE-ECC-CEEEEEC--
T ss_pred             EEEEEEEeCc-cce-Eee-eEEEEhhhh
Confidence            9999999998 763 333 778888754

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.43  E-value=3.7e-13  Score=89.71  Aligned_cols=83  Identities=18%  Similarity=0.415  Sum_probs=66.0

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCcc---EEEeccCCCCCCcceEE
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVFNATPNDGYKSYRC   97 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~---L~I~nv~~~D~g~~Y~C   97 (129)
                      |...+++. .+.+|+++.|.|.+.+.     +.+.|++++..|.    .++||.+..+|.   |.|.+++.+|+| .|+|
T Consensus        11 ~~~~~~~~-~v~~G~~v~l~C~~~~~-----p~v~W~k~~~~~~----~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C   79 (108)
T 2dm7_A           11 FTQDLKTK-EASEGATATLQCELSKV-----APVEWKKGPETLR----DGGRYSLKQDGTRCELQIHDLSVADAG-EYSC   79 (108)
T ss_dssp             BCSCCBCC-EEETTSCEEEEEEBSSS-----CCCEEESSSSBCC----SSSSCEEEEETTEEEEEESSCCTTTCS-EEEE
T ss_pred             eeecCCcE-EEeCCCcEEEEEEeCCC-----CeeEEEECCEECC----CCCCEEEEecCCEEEEEECCCCcccCE-EEEE
Confidence            44445666 89999999999998643     3589999997764    358999988888   999999999998 9999


Q ss_pred             EeecccCCeEEecccceEEEEecCC
Q psy5694          98 RTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        98 ~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      .|.|.       +. .+.|.|.++.
T Consensus        80 ~a~n~-------~~-~~~l~V~~~p   96 (108)
T 2dm7_A           80 MCGQE-------RT-SATLTVRALP   96 (108)
T ss_dssp             EETTE-------EE-EEECEEECCC
T ss_pred             EEcCC-------EE-EEEEEEecCC
Confidence            99653       22 5688888754

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.43  E-value=6.7e-13  Score=89.27  Aligned_cols=87  Identities=21%  Similarity=0.400  Sum_probs=69.1

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc---cEEEeccCCCCCCcceE
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVFNATPNDGYKSYR   96 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG---~L~I~nv~~~D~g~~Y~   96 (129)
                      .|...+++. .+.+|+++.|.|.+.+.     +.+.|++|+..|.    .+.||.+..+|   .|.|.+++.+|+| .|+
T Consensus        21 ~~~~~~~~~-~v~~G~~v~l~C~~~~~-----p~v~W~k~~~~l~----~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~   89 (113)
T 2edh_A           21 KFTEGLRNE-EATEGATAVLRCELSKM-----APVEWWKGHETLR----DGDRHSLRQDGARCELQIRGLVAEDAG-EYL   89 (113)
T ss_dssp             CEEECCCCC-EECTTSCEEEEEEESSC-----CCCEEEESSSBCC----CSSSEEEEEETTEEEEEECSCCSTTCE-EEE
T ss_pred             cccccCCce-EEeCCCeEEEEEEECCC-----CcEEEEECCEECC----CCCcEEEEECCCEEEEEECCCChhhCE-EEE
Confidence            355566777 89999999999999643     3589999997774    35899999888   7999999999997 999


Q ss_pred             EEeecccCCeEEecccceEEEEecCCCCC
Q psy5694          97 CRTVNKITGESQASVFQTRLSITGKLKSL  125 (129)
Q Consensus        97 C~a~N~ltge~k~S~~~~~L~V~ep~~~~  125 (129)
                      |.|     |..  +. .+.|.|.+++..+
T Consensus        90 C~a-----~~~--~~-~~~l~V~~~p~~~  110 (113)
T 2edh_A           90 CMC-----GKE--RT-SAMLTVRAMPSGP  110 (113)
T ss_dssp             EEE-----TTE--EE-EEEEEECCCCCSS
T ss_pred             EEe-----CCC--CE-EEEEEEeCCCCCc
Confidence            999     332  33 5699999876543

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.43  E-value=4.2e-13  Score=100.55  Aligned_cols=83  Identities=12%  Similarity=0.144  Sum_probs=60.7

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEE---eccCCCCCCcceE
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYV---FNATPNDGYKSYR   96 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I---~nv~~~D~g~~Y~   96 (129)
                      .+...+++. .+.+|+++.|.|.+.+.|+   |.++|++++..+......++|+.+.++|.|.|   .+++.+|.| .|+
T Consensus       108 ~~~~~~~~~-~v~~g~~~~l~C~~~G~P~---P~v~W~~~~~~~~~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G-~Yt  182 (203)
T 4fa8_A          108 TLSVHSERS-QFPDFSVLTVTCTVNAFPH---PHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHL-PVT  182 (203)
T ss_dssp             EEEEEEEEC-CSSCSCCEEEEEEEEEESC---CEEEECCC------------CCEECTTSCEEEEEEEEECSSCCC-CEE
T ss_pred             eeeecceeE-EEcCCCEEEEEEEcCCCCC---CEEEEEECCeeecCcccccceEEEeCCCCEEEEEECCCCHHHCE-EEE
Confidence            355566666 8899999999999988774   67999987743322123568999999999877   599999998 999


Q ss_pred             EEeecccCCeEE
Q psy5694          97 CRTVNKITGESQ  108 (129)
Q Consensus        97 C~a~N~ltge~k  108 (129)
                      |+|.|.. |+.+
T Consensus       183 C~A~N~~-G~a~  193 (203)
T 4fa8_A          183 CVGKNDK-EEAH  193 (203)
T ss_dssp             EEEESSS-CEEE
T ss_pred             EEEEcCC-CEEE
Confidence            9999998 7754

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=99.43  E-value=1.6e-12  Score=90.30  Aligned_cols=92  Identities=16%  Similarity=0.235  Sum_probs=67.8

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeC-CCCCCCceeEeEEeecce-----eee----------cccCCCceEEEccCccEEEe
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQI-PSYMSEYIIVTSWIQDDV-----NIY----------LNTDTGGKYVVLSSGDLYVF   84 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~v-p~~~~~~v~v~sW~~d~~-----~i~----------~~~~~~~ry~vlpsG~L~I~   84 (129)
                      ..+.+... .|.+|..|+|.|+. |   .+ ...++|.+.+.     .|.          +...-.+|+.++++|.|.|+
T Consensus         3 l~i~~~p~-~~~~G~~v~L~~~~~p---~~-~~~i~W~kg~~~~~~~~I~~y~~~~~~~~~~~~~~gR~~~~~ngSL~I~   77 (111)
T 2qsq_A            3 LTIESTPF-NVAEGKEVLLLVHNLP---QH-LFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQ   77 (111)
T ss_dssp             CEEEEESS-EEETTSCEEEEEESCC---SS-EEEEEEEESSSCCGGGEEEEEETTTTEEEECTTCCSCEEECTTSCEEEC
T ss_pred             cEEEeccc-eeccCCCEEEEEeCCC---CC-ceEEEEEeCCCCCCCcEEEEEECCCcceecCcccCCcEEEecCCcEEEc
Confidence            34555566 89999999999984 4   22 46799999752     111          00113689999999999999


Q ss_pred             ccCCCCCCcceEEEeecccCCeEEecccceEEEEecC
Q psy5694          85 NATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        85 nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      ||+.+|+| .|.|++.|.. +.. .+. .+.|.|.++
T Consensus        78 nvt~~D~G-~Ytc~v~~~~-~~~-~~~-~~~L~V~~~  110 (111)
T 2qsq_A           78 NIIQNDAG-FYTLHVIKSD-LVN-EEA-TGQFRVYPE  110 (111)
T ss_dssp             SCCGGGCE-EEEEEEEETT-SCC-EEE-EEEEEEECC
T ss_pred             cCcccCCe-EEEEEEEeCC-CcE-EEE-EEEEEEecC
Confidence            99999998 9999999985 332 233 568888875

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.42  E-value=7.4e-13  Score=87.49  Aligned_cols=86  Identities=16%  Similarity=0.257  Sum_probs=65.8

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCcc---EEEeccCCCCCCcceEE
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVFNATPNDGYKSYRC   97 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~---L~I~nv~~~D~g~~Y~C   97 (129)
                      |...+++.+.|..|+++.|.|.+. .+   .+.+.|++|+..|..    +.||.+..+|.   |.|.+++.+|+| .|+|
T Consensus        10 ~~~~~~~~~~v~~G~~v~l~C~~~-~p---~~~v~W~k~g~~i~~----~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C   80 (100)
T 2yuv_A           10 FAKILDPAYQVDKGGRVRFVVELA-DP---KLEVKWYKNGQEIRP----STKYIFEHKGCQRILFINNCQMTDDS-EYYV   80 (100)
T ss_dssp             EEECCCSCEEECTTEEEEEEEEES-CT---TSCEEEEESSCBCCC----BTTEEEEEETTEEEEEEEEECTTTCC-EEEE
T ss_pred             EEecCCCccEEcCCCcEEEEEEec-CC---CceEEEEECCEECCC----CCCEEEEecCCEEEEEEcCCCcCcCE-EEEE
Confidence            444555533677999999999997 44   356899999977743    46888877664   999999999998 9999


Q ss_pred             EeecccCCeEEecccceEEEEecCCC
Q psy5694          98 RTVNKITGESQASVFQTRLSITGKLK  123 (129)
Q Consensus        98 ~a~N~ltge~k~S~~~~~L~V~ep~~  123 (129)
                      .|     |..  +. .+.|.|.+|+-
T Consensus        81 ~a-----g~~--~~-~~~l~V~~~P~   98 (100)
T 2yuv_A           81 TA-----GDE--KC-STELFVRSGPS   98 (100)
T ss_dssp             EE-----TTE--EE-EEEEEECCSCC
T ss_pred             EE-----CCc--eE-EEEEEEecCCC
Confidence            99     332  22 56999998753

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.42  E-value=1.9e-13  Score=89.10  Aligned_cols=83  Identities=14%  Similarity=0.157  Sum_probs=62.2

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--eeeecccCCCceEEE-ccCccEEEeccCCCCCCcceEEEee
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VNIYLNTDTGGKYVV-LSSGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~~i~~~~~~~~ry~v-lpsG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      .+++. .+..|+++.|.|.+.+.|.   +.++|.+++  ..|..    +.++.. ...+.|.|.+++.+|+| .|+|.|.
T Consensus         8 ~~~~~-~v~~G~~~~l~C~~~g~P~---p~i~W~k~~~~~~~~~----~~~~~~~~~~~~L~i~~~~~~D~G-~Y~C~a~   78 (93)
T 1wit_A            8 ASRKI-KIKAGFTHNLEVDFIGAPD---PTATWTVGDSGAALAP----ELLVDAKSSTTSIFFPSAKRADSG-NYKLKVK   78 (93)
T ss_dssp             CCCEE-EECTTBCCEEEEEEECCSS---CEEEEECSTTTCBCST----TSEEEEETTEEEEECTTBCGGGCE-EEEEEEE
T ss_pred             CCCce-EEeCCCEEEEEEEEEEcCC---CEEEEEECCCCcccCC----cEEEEecCCEEEEEECCCChhcCE-EEEEEEE
Confidence            34555 8899999999999998874   579999998  77732    222222 23467999999999997 9999999


Q ss_pred             cccCCeEEecccceEEEEe
Q psy5694         101 NKITGESQASVFQTRLSIT  119 (129)
Q Consensus       101 N~ltge~k~S~~~~~L~V~  119 (129)
                      |.. |+.  +. .+.|.|+
T Consensus        79 N~~-G~~--~~-~~~l~V~   93 (93)
T 1wit_A           79 NEL-GED--EA-IFEVIVQ   93 (93)
T ss_dssp             ETT-EEE--EE-EEEEEEC
T ss_pred             cCC-CeE--EE-EEEEEEC
Confidence            998 653  33 4467663

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.42  E-value=3.8e-13  Score=88.10  Aligned_cols=80  Identities=21%  Similarity=0.310  Sum_probs=59.2

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEE-ccCccEEEeccCCCCCCcceEEEeecccCCeEE
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV-LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQ  108 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~v-lpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k  108 (129)
                      .|..|+++.|.|.+.+.|.   +.+.|++++..|..... ..++.+ ..++.|.|.+++.+|+| .|+|.|.|.. |...
T Consensus        19 ~v~~G~~v~l~C~~~g~p~---p~v~W~~~~~~~~~~~~-~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~a~N~~-g~~~   92 (100)
T 3caf_A           19 AVPAANTVKFRCPAGGNPM---PTMRWLKNGKEFKQEHR-IGGYKVRNQHWSLIMESVVPSDKG-NYTCVVENEY-GSIN   92 (100)
T ss_dssp             EECTTCCEEEECCEEEESC---CEEEEEETTEECCGGGS-TTCCEEEGGGTEEEECSCCGGGCE-EEEEEEEETT-EEEE
T ss_pred             EecCCCEEEEEEEccccCC---CEEEEEECCEEcccccc-cccEEEecCeEEEEEccCCcCCCE-EEEEEEEeCC-CEEE
Confidence            7889999999999976664   56899999977754311 122333 34568999999999997 9999999998 6532


Q ss_pred             ecccceEEEE
Q psy5694         109 ASVFQTRLSI  118 (129)
Q Consensus       109 ~S~~~~~L~V  118 (129)
                        . .+.|.|
T Consensus        93 --~-~~~l~V   99 (100)
T 3caf_A           93 --H-TYHLDV   99 (100)
T ss_dssp             --E-EEEEEE
T ss_pred             --E-EEEEEE
Confidence              2 335554

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.42  E-value=9.4e-13  Score=93.43  Aligned_cols=90  Identities=27%  Similarity=0.365  Sum_probs=71.4

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEee
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      +...+.+. .+..|+++.|.|.+.+.+.   +.++|++++..|.    .+.++.+..+|.|.|.+++.+|.| .|+|.|.
T Consensus       103 ~~~~~~~~-~~~~g~~~~l~C~~~g~p~---~~v~W~~~~~~~~----~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~  173 (192)
T 2iep_A          103 ITRPPINV-KIIEGLKAVLPCTTMGNPK---PSVSWIKGDSALR----ENSRIAVLESGSLRIHNVQKEDAG-QYRCVAK  173 (192)
T ss_dssp             EEECCCCE-EEETTSCEEECCEEEEESC---CEEEEEETTEECC----CCSSEEECTTSCEEESSCCGGGCE-EEEEEEE
T ss_pred             cccCCcce-EEeCCCcEEEEEEEeccCC---ceEEEEeCCEEcc----CCCcEEEecCCcEEEecCChhhCE-EEEEEEE
Confidence            44444555 8899999999999977664   4689999997774    357888999999999999999997 9999999


Q ss_pred             cccCCeEEecccceEEEEecCC
Q psy5694         101 NKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus       101 N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      |.+ |.. .|. ...|.|+.|+
T Consensus       174 n~~-g~~-~s~-~~~l~V~~pp  192 (192)
T 2iep_A          174 NSL-GTA-YSK-LVKLEVEVFA  192 (192)
T ss_dssp             ETT-EEE-ECC-CEEEEEEC--
T ss_pred             cCC-CcE-EEE-EEEEEEEeCC
Confidence            997 553 343 6789888763

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=7.6e-13  Score=87.33  Aligned_cols=79  Identities=22%  Similarity=0.364  Sum_probs=63.4

Q ss_pred             eeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc---cEEEeccCCCCCCcceEEEeecc
Q psy5694          26 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        26 ~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG---~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      .+. .+.+|+++.|.|.+. .+   .+.+.|++|+..|..    +.|+.+..+|   .|.|.+++.+|+| .|+|.|.|.
T Consensus        19 ~~~-~v~~G~~v~L~C~~~-~p---~~~v~W~k~g~~~~~----~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~~~   88 (102)
T 2eo1_A           19 REV-QAEAGASATLSCEVA-QA---QTEVTWYKDGKKLSS----SSKVRVEAVGCTRRLVVQQAGQAEAG-EYSCEAGGQ   88 (102)
T ss_dssp             EEE-EEETTCCEEECCBCS-CS---SSCCEEEETTEECCC----CSSEEEEEETTEEEEEETTCCTTTCS-CEEEEETTE
T ss_pred             ccE-EEeCCCcEEEEEEec-CC---CCceEEEECCEECCC----CCCEEEEEcCCEEEEEECCCCcccCE-EEEEEcCCC
Confidence            444 789999999999996 43   356899999987743    4688888766   7999999999998 999999653


Q ss_pred             cCCeEEecccceEEEEecCC
Q psy5694         103 ITGESQASVFQTRLSITGKL  122 (129)
Q Consensus       103 ltge~k~S~~~~~L~V~ep~  122 (129)
                             +. .+.|.|.+|.
T Consensus        89 -------~~-~~~l~V~~p~  100 (102)
T 2eo1_A           89 -------QL-SFRLQVAGQC  100 (102)
T ss_dssp             -------EC-CEEEEEESCC
T ss_pred             -------cE-EEEEEEeCCC
Confidence                   22 5699999875

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=2.3e-12  Score=90.09  Aligned_cols=90  Identities=17%  Similarity=0.245  Sum_probs=68.7

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCc-------eEEEccCc---cEEEeccCCC
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGG-------KYVVLSSG---DLYVFNATPN   89 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~-------ry~vlpsG---~L~I~nv~~~   89 (129)
                      .|...+++. .|.+|..|+|.|.+.+     .+.+.|++|+..|.++ +..+       ||.+..+|   .|.|++++.+
T Consensus        10 ~~~~~l~d~-~v~eG~~a~f~C~vs~-----~p~v~W~knG~~l~~~-~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~   82 (112)
T 2e6q_A           10 RLVAGLEDV-QVYDGEDAVFSLDLST-----IIQGTWFLNGEELKSN-EPEGQVEPGALRYRIEQKGLQHRLILHAVKHQ   82 (112)
T ss_dssp             CEEECCCCE-EEETTCEEEEEEEESS-----CCCCEEEESSCBCCSS-CCCTTSCTTSCEEEECCBTTEEEEEEESCCST
T ss_pred             EEecCCCCe-EEcCCCcEEEEEEECC-----CCeEEEEECCEECccC-cccccccccccEEEEEeCCcEEEEEECCCCHH
Confidence            356667888 9999999999999975     2458999999888653 1112       99998888   6999999999


Q ss_pred             CCCcceEEEeecccCCeEEecccceEEEEecCCCC
Q psy5694          90 DGYKSYRCRTVNKITGESQASVFQTRLSITGKLKS  124 (129)
Q Consensus        90 D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~~~  124 (129)
                      |+| .|.|..-+.   .   .+ .|+|.|.+++-.
T Consensus        83 D~G-~Y~~~~~~~---~---~s-sA~L~V~~~p~~  109 (112)
T 2e6q_A           83 DSG-ALVGFSCPG---V---QD-SAALTIQESSGP  109 (112)
T ss_dssp             TCS-EEEEEEETT---E---EE-EEEEEEECSSCS
T ss_pred             HCc-cEEEEEECC---e---eE-EEEEEEeCCCcc
Confidence            998 997743332   1   22 679999987643

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.40  E-value=8.4e-13  Score=96.42  Aligned_cols=93  Identities=20%  Similarity=0.331  Sum_probs=68.7

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccC---ccEEEeccCCCCCCcceEE
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS---GDLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlps---G~L~I~nv~~~D~g~~Y~C   97 (129)
                      +...+... .+..|.++.|.|.+.+.|+   +.++|++|+..|... ...+|+.+..+   +.|.|.+++.+|.| .|+|
T Consensus       111 ~~~~~~~~-~~~~g~~v~l~C~~~g~p~---p~v~W~~~g~~l~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C  184 (212)
T 2yd6_A          111 IDMGPQLK-VVERTRTATMLCAASGNPD---PEITWFKDFLPVDTS-NNNGRIKQLRSESIGALQIEQSEESDQG-KYEC  184 (212)
T ss_dssp             EEECCCCE-EEETTSCEEEEEEEECSSC---CEEEEEETTEEC-------CCEEEEEETTEEEEEECSCCGGGCE-EEEE
T ss_pred             eecCCcce-eEecCCCEEEEEEecCCCC---CeEEEEECCccccCc-CCCceEEEEecCCeEEEEEcCCCcccCE-EEEE
Confidence            44445555 7889999999999987764   569999999777542 23467777654   88999999999997 9999


Q ss_pred             EeecccCCeEEecccceEEEEecCC
Q psy5694          98 RTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        98 ~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      +|.|.+ |. ..|+ ++.|.|..++
T Consensus       185 ~a~N~~-G~-~~s~-~a~l~~~~~~  206 (212)
T 2yd6_A          185 VATNSA-GT-RYSA-PANLYVRGTK  206 (212)
T ss_dssp             EEEETT-EE-EECC-CEEEEEEC--
T ss_pred             EEECCC-Cc-cccc-cccEEEEecc
Confidence            999998 66 3344 7888887553

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.40  E-value=9e-13  Score=94.41  Aligned_cols=93  Identities=13%  Similarity=0.146  Sum_probs=67.8

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-eeeecccCCCceEEEc---------cCccEEEeccCCC
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYVVL---------SSGDLYVFNATPN   89 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-~~i~~~~~~~~ry~vl---------psG~L~I~nv~~~   89 (129)
                      .|..++++. .|.+|++|.|.|.+.+..-...+.+.|+|+. ..+..  ..+.++.+.         .++.|.|+||+.+
T Consensus         9 ~F~~~P~~v-~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   85 (126)
T 2dav_A            9 LFIEKPQGG-TVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLAS--KAGKHLQLKETFERHSRVYTFEMQIIKAKDN   85 (126)
T ss_dssp             SCCSCCCCC-EEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHH--HTTSSEEEEEEEETTTTEEEEEEEECSCCTT
T ss_pred             EEEEcCCCe-EEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCC--CCCceEEEccccccccccceEEEEEccCCcc
Confidence            466678887 9999999999999864311115789999975 22211  113455442         1478999999999


Q ss_pred             CCCcceEEEeecccCCeEEecccceEEEEec
Q psy5694          90 DGYKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        90 D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      |+| .|+|.+.|.. |.  .+. .+.|.|.+
T Consensus        86 DaG-~Y~Cevsn~~-g~--~~~-~~~L~V~~  111 (126)
T 2dav_A           86 FAG-NYRCEVTYKD-KF--DSC-SFDLEVHE  111 (126)
T ss_dssp             SCE-EEEEEEECSS-CE--EEE-CCEEEEEC
T ss_pred             cCE-EEEEEEEeCC-Cc--EEE-EEEEEEEe
Confidence            997 9999999996 66  344 66999998

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.40  E-value=1.1e-12  Score=88.70  Aligned_cols=85  Identities=19%  Similarity=0.367  Sum_probs=64.9

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc---cEEEeccCCCCCCcceE
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVFNATPNDGYKSYR   96 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG---~L~I~nv~~~D~g~~Y~   96 (129)
                      .|...+.+.+.|.+|.+|.|.|.+ +.+.   +.+.|++|+..|..   ...||.+..+|   .|.|.+++.+|+| .|.
T Consensus        17 ~f~~~~~~~~~v~~G~~v~L~C~~-~~p~---~~v~W~k~g~~l~~---~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~   88 (104)
T 1pd6_A           17 AFQKKLEPAYQVSKGHKIRLTVEL-ADHD---AEVKWLKNGQEIQM---SGSKYIFESIGAKRTLTISQCSLADDA-AYQ   88 (104)
T ss_dssp             SCSEECCSEEEEETTSCEEEEEEC-SSSS---SCCEEEESSSEECC---CSSSSEEEEETTEEEEEECSCSSSSCE-EEE
T ss_pred             EEEEcCCCcEEEecCCCEEEEEEE-cCCC---CEEEEEECCEECCC---CCCeEEEEecCCEEEEEECCCCcccCE-EEE
Confidence            355555663389999999999999 4442   45899999987743   22688888778   8999999999997 999


Q ss_pred             EEeecccCCeEEecccceEEEEec
Q psy5694          97 CRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        97 C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      |.|.|.       +. .++|.|.|
T Consensus        89 C~a~~~-------~~-~~~l~V~e  104 (104)
T 1pd6_A           89 CVVGGE-------KC-STELFVKE  104 (104)
T ss_dssp             EEETTE-------EE-CCEEEEEC
T ss_pred             EEECCC-------cE-EEEEEEeC
Confidence            999442       22 45888865

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.40  E-value=9.6e-13  Score=85.56  Aligned_cols=83  Identities=16%  Similarity=0.217  Sum_probs=64.0

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEee
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      +...+++. .+..|.++.|.|.+.+.|+   +.+.|++++..+...          .++.|.|.+++.+|+| .|+|.|.
T Consensus         6 i~~~p~~~-~v~~G~~~~l~C~~~g~p~---p~i~W~~~~~~~~~~----------~~~~L~i~~v~~~d~G-~Y~C~a~   70 (91)
T 3bfo_A            6 ICVEPTSQ-KLMPGSTLVLQCVAVGSPI---PHYQWFKNELPLTHE----------TKKLYMVPYVDLEHQG-TYWCHVY   70 (91)
T ss_dssp             EEECCCCE-EECTTSCEEEECEEECSSC---CEEEEEETTEECTTC----------CSSEEEESSCCGGGCE-EEEEEEE
T ss_pred             EEECCCcc-EecCCCcEEEEEEeccCCC---CEEEEEcCCeeCCcC----------CCCeEEECCCCHHhCE-EEEEEEE
Confidence            34556666 8899999999999987774   578999998776321          2478999999999997 9999999


Q ss_pred             cccCCeEEecccceEEEEecC
Q psy5694         101 NKITGESQASVFQTRLSITGK  121 (129)
Q Consensus       101 N~ltge~k~S~~~~~L~V~ep  121 (129)
                      |.. |. ..|. ...|.|.+.
T Consensus        71 n~~-g~-~~s~-~~~l~V~~~   88 (91)
T 3bfo_A           71 NDR-DS-QDSK-KVEIIIDEL   88 (91)
T ss_dssp             CSS-CE-EECC-CEEEEEC--
T ss_pred             cCC-CC-EEee-eEEEEEehh
Confidence            998 54 2344 678888653

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.39  E-value=4.5e-13  Score=87.71  Aligned_cols=93  Identities=18%  Similarity=0.244  Sum_probs=64.4

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccC-CCceEEEc------cCccEEEeccCCCCCCc
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTD-TGGKYVVL------SSGDLYVFNATPNDGYK   93 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~-~~~ry~vl------psG~L~I~nv~~~D~g~   93 (129)
                      +...+++. .+..|+++.|.|.+.+.+.. .+.+.|.+++..|..... ...++.+.      .++.|.|.+++.+|+| 
T Consensus        13 i~~~p~~~-~v~~G~~v~L~C~~~~~~~~-~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-   89 (112)
T 3so5_A           13 ITVQPETQ-SAIXGSDVSFTCSAASSSDS-PMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEG-   89 (112)
T ss_dssp             EEECCCCE-EECTTCCEEEEEEEEESCCC-CCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGCE-
T ss_pred             EEeCCCCc-EEECCCCEEEEEEEecCCCC-CEEEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccccCC-
Confidence            44556666 89999999999998754322 256899999977643100 00122111      2478999999999997 


Q ss_pred             ceEEEeecccCCeEEecccceEEEEe
Q psy5694          94 SYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        94 ~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      .|+|.|.|.. |.. .|. .+.|.|.
T Consensus        90 ~Y~C~a~n~~-g~~-~s~-~~~l~V~  112 (112)
T 3so5_A           90 XYQCVISNHF-GSS-YSV-XAXLTIN  112 (112)
T ss_dssp             EEEEEEEETT-EEE-ECC-CEEEEEC
T ss_pred             eEEEEEEeCC-CcE-EEe-EEEEEeC
Confidence            9999999998 542 344 6677763

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.39  E-value=7e-13  Score=94.27  Aligned_cols=80  Identities=21%  Similarity=0.364  Sum_probs=66.7

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEee
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      +...+... .+..|+++.|.|.+.+.|+   +.++|.+++..+...  .+.||.+..+|.|.|.+++.+|.| .|+|.|.
T Consensus       103 ~~~~~~~~-~~~~g~~~~l~C~~~g~p~---~~v~W~~~~~~~~~~--~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~  175 (191)
T 1epf_A          103 FKNAPTPQ-EFKEGEDAVIVCDVVSSLP---PTIIWKHKGRDVILK--KDVRFIVLSNNYLQIRGIKKTDEG-TYRCEGR  175 (191)
T ss_dssp             EEECCSSE-ECCTTSCEEECCEEECSSC---CEEEEEETTEEGGGG--CCTTEEECTTSCEEETTCCGGGCE-EEEEEEE
T ss_pred             EecCCCcE-eecCCCeEEEEEEECCCCC---CEEEEEECCEEeecc--CCceEEEecCCeEEECCCChhhCE-EEEEEEE
Confidence            34445555 7889999999999987774   469999999777542  467999999999999999999997 9999999


Q ss_pred             cccCCeE
Q psy5694         101 NKITGES  107 (129)
Q Consensus       101 N~ltge~  107 (129)
                      |..+++.
T Consensus       176 n~~~~~~  182 (191)
T 1epf_A          176 ILARGEI  182 (191)
T ss_dssp             EGGGTEE
T ss_pred             EecceeE
Confidence            9987774

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.39  E-value=1.7e-12  Score=89.30  Aligned_cols=90  Identities=22%  Similarity=0.344  Sum_probs=66.1

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-eeeecc---cCCCceEEEcc----CccEEEeccCCCCCCcce
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLN---TDTGGKYVVLS----SGDLYVFNATPNDGYKSY   95 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-~~i~~~---~~~~~ry~vlp----sG~L~I~nv~~~D~g~~Y   95 (129)
                      .+++. .|.+|++|.|.|.+.+.+.   +.+.|++++ ..+...   ...++||.+..    ++.|.|.|++.+|+| .|
T Consensus         7 ~~~~~-~v~~G~~v~L~C~~~~~p~---~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG-~Y   81 (124)
T 3rbg_A            7 HTETI-TVEEGQTLTLKCVTSLRKN---SSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEG-VY   81 (124)
T ss_dssp             SEEEE-EEETTSCEEEEEECCCCTT---CEEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCGGGCE-EE
T ss_pred             CCccE-EEcCCCCEEEEeEEeccCC---CEEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCChHHCE-EE
Confidence            34455 8999999999999987663   578999866 333211   12467887754    578999999999997 99


Q ss_pred             EEEeecccCCeEEecccceEEEEecCCC
Q psy5694          96 RCRTVNKITGESQASVFQTRLSITGKLK  123 (129)
Q Consensus        96 ~C~a~N~ltge~k~S~~~~~L~V~ep~~  123 (129)
                      .|.+.|.  |..  +. .+.|.|..++.
T Consensus        82 ~C~a~n~--g~~--~~-~~~l~V~~~P~  104 (124)
T 3rbg_A           82 KCLHYSD--SVS--TK-EVKVIVLATMK  104 (124)
T ss_dssp             EEEEESS--SEE--EE-EEEEEEECC--
T ss_pred             EEEEEcC--CCC--cE-EEEEEEEeCCC
Confidence            9999998  553  32 45888886654

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=1.1e-12  Score=87.89  Aligned_cols=77  Identities=14%  Similarity=0.207  Sum_probs=61.7

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc---cEEEeccCCCCCCcceEEEeecccCCe
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGE  106 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG---~L~I~nv~~~D~g~~Y~C~a~N~ltge  106 (129)
                      .+..|+++.|.|.+. .+   .+.+.|++|+..|..    +.||.+..+|   .|.|.+++.+|+| .|+|.|.|     
T Consensus        24 ~~~~G~~v~L~C~~~-~p---~~~v~W~k~g~~~~~----~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~n-----   89 (113)
T 2cpc_A           24 AAVRLERVVLTCELC-RP---WAEVRWTKDGEEVVE----SPALLLQKEDTVRRLVLPAVQLEDSG-EYLCEIDD-----   89 (113)
T ss_dssp             EEETTCCEEEEEEES-CT---TCCCEEEETTEECCC----BTTBEEEECSSEEEEEESSCCTTTCE-EEEEESSS-----
T ss_pred             EEEcCCeEEEEEEec-CC---CCeEEEEECCEECcc----CCCEEEEECCCEEEEEECCCCcccCE-EEEEEEec-----
Confidence            678999999999984 33   256899999987743    4678777665   7999999999997 99999999     


Q ss_pred             EEecccceEEEEecCCC
Q psy5694         107 SQASVFQTRLSITGKLK  123 (129)
Q Consensus       107 ~k~S~~~~~L~V~ep~~  123 (129)
                        .+. .+.|.|.++..
T Consensus        90 --~~~-~~~l~V~~~p~  103 (113)
T 2cpc_A           90 --ESA-SFTVTVTEPPV  103 (113)
T ss_dssp             --CEE-EEEEEEECCCC
T ss_pred             --CcE-EEEEEEecCCc
Confidence              133 66888887653

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.38  E-value=1.2e-12  Score=93.62  Aligned_cols=87  Identities=20%  Similarity=0.207  Sum_probs=61.9

Q ss_pred             eeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecce-eeecc-----------cCCCceEEE----------c
Q psy5694          19 QKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDV-NIYLN-----------TDTGGKYVV----------L   76 (129)
Q Consensus        19 q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~-~i~~~-----------~~~~~ry~v----------l   76 (129)
                      |++++++..++.+..|++|.|.|.+.+.+.+.+..+.|+|++. .+...           ....+|+..          .
T Consensus         1 qdv~V~vp~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (225)
T 4fmk_A            1 QDVRVRVLPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADL   80 (225)
T ss_dssp             -CCSEECCSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSC
T ss_pred             CcEEEEeCCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeecccccccccc
Confidence            4567777666689999999999999877666566789999873 22100           011223332          2


Q ss_pred             cCccEEEeccCCCCCCcceEEEeecccCCe
Q psy5694          77 SSGDLYVFNATPNDGYKSYRCRTVNKITGE  106 (129)
Q Consensus        77 psG~L~I~nv~~~D~g~~Y~C~a~N~ltge  106 (129)
                      .++.|.|.||+.+|+| .|+|.+.|..++.
T Consensus        81 ~~~sL~I~~v~~~D~G-~Y~C~~~~~~~~~  109 (225)
T 4fmk_A           81 RDATLAFRGLRVEDEG-NYTCEFATFPNGT  109 (225)
T ss_dssp             CBCCEEECSCCGGGCE-EEEEEEEEETTEE
T ss_pred             CcEEEEEccCCHHHCc-ceEEEEEeCCCcc
Confidence            3577999999999997 9999999976433

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=2.1e-12  Score=85.27  Aligned_cols=86  Identities=20%  Similarity=0.344  Sum_probs=66.8

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc---cEEEeccCCCCCCcceE
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVFNATPNDGYKSYR   96 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG---~L~I~nv~~~D~g~~Y~   96 (129)
                      .|...+++. .|.+|++|.|.|.+ +.+.   +.+.|++++..|..    +.||.+..+|   .|.|.+++.+|+| .|+
T Consensus        10 ~~~~~~~~~-~v~~G~~v~l~C~~-~~p~---~~v~W~k~~~~l~~----~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~   79 (103)
T 2dku_A           10 CFTEELTNL-QVEEKGTAVFTCKT-EHPA---ATVTWRKGLLELRA----SGKHQPSQEGLTLRLTISALEKADSD-TYT   79 (103)
T ss_dssp             CCSSCCCCE-EEETTSEEEEEEEC-SSCC---SCCEEEESSCBCCS----SSSEEEEEETTEEEEEEESCCTTTCS-EEE
T ss_pred             EeEecCCcE-EEeCCCcEEEEEEe-CCCC---CeEEEEeCCEECCC----CCeEEEEeCCCEEEEEECCCCcccCE-EEE
Confidence            344556666 89999999999995 4443   46899999977743    4799988788   7999999999998 999


Q ss_pred             EEeecccCCeEEecccceEEEEecCCC
Q psy5694          97 CRTVNKITGESQASVFQTRLSITGKLK  123 (129)
Q Consensus        97 C~a~N~ltge~k~S~~~~~L~V~ep~~  123 (129)
                      |.    . |+.  +. .+.|.|.++..
T Consensus        80 C~----~-g~~--~~-~~~l~V~~~p~   98 (103)
T 2dku_A           80 CD----I-GQA--QS-RAQLLVQGRRS   98 (103)
T ss_dssp             EE----C-SSC--BC-CEEEEEECSCC
T ss_pred             EE----e-CCc--eE-EEEEEEeCccC
Confidence            98    2 442  33 56999987654

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.37  E-value=1.5e-12  Score=87.39  Aligned_cols=79  Identities=14%  Similarity=0.094  Sum_probs=59.9

Q ss_pred             EeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceE----EEc----cCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKY----VVL----SSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry----~vl----psG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      ..|..+.|.|.+.+.|+   +.++|++|+..|...    .++    ...    .+|.|.|.+++.+|+| .|+|.|.|.+
T Consensus        14 ~~~~~~~~~c~v~G~P~---P~i~W~k~g~~l~~~----~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~A~N~~   85 (103)
T 1wwb_X           14 TSDHHWCIPFTVKGNPK---PALQWFYNGAILNES----KYICTKIHVTNHTEYHGCLQLDNPTHMNNG-DYTLIAKNEY   85 (103)
T ss_dssp             CCCCEEEEEEEEECSSC---CEEEEEETTEEECCC----SSEEEEEEEECSSEEEEEEEEESCCGGGCE-EEEEEEECSS
T ss_pred             eECcEEEEEEEEEEeCC---CEEEEEECCEECCCC----CcEeEEEEecCCcEEEEEEEECCCCcccCE-EEEEEEEeCC
Confidence            45888999999998884   679999999888532    332    111    2344999999999997 9999999998


Q ss_pred             CCeEEecccceEEEEecCC
Q psy5694         104 TGESQASVFQTRLSITGKL  122 (129)
Q Consensus       104 tge~k~S~~~~~L~V~ep~  122 (129)
                       |+...   .+.|.|.+++
T Consensus        86 -G~~~~---~~~l~V~~~P  100 (103)
T 1wwb_X           86 -GKDEK---QISAHFMGWP  100 (103)
T ss_dssp             -CEEEE---EEEECCSCCC
T ss_pred             -CcEeE---EEEEEECCCC
Confidence             77433   4578877654

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.36  E-value=1.3e-12  Score=92.17  Aligned_cols=93  Identities=17%  Similarity=0.316  Sum_probs=68.4

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEe
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a   99 (129)
                      .|...+.+. .+.+|+.+.|.|.+.+.+.   +.+.|++++..+..  ..++|+.+..+|.|.|.+++.+|+| .|+|.+
T Consensus         4 ~~~~~~~~~-~v~~G~~v~l~C~~~~~p~---~~v~W~~~~~~~~~--~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~   76 (189)
T 2v5t_A            4 TFREVVSPQ-EFKQGEDAEVVCRVSSSPA---PAVSWLYHNEEVTT--ISDNRFAMLANNNLQILNINKSDEG-IYRCEG   76 (189)
T ss_dssp             EEEECCSSE-EEETTSCEEECCEEECSSC---CEEEEEC-----CB--CCCTTEEECTTSCEEETTCCGGGCE-EEEEEE
T ss_pred             eeeccCCCE-EEeCCCcEEEEEEEcCCCC---CEEEEEECCcccee--ccCCeEEEecCCCEEEeeCCHhHCc-EEEEEE
Confidence            355566777 8999999999999987653   56999999866643  2468999999999999999999997 999999


Q ss_pred             ecccCCeEEecccceEEEEecC
Q psy5694         100 VNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus       100 ~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      .|...+... +. ...|.|..+
T Consensus        77 ~~~~~~~~~-~~-~~~l~v~~~   96 (189)
T 2v5t_A           77 RVEARGEID-FR-DIIVIVNVP   96 (189)
T ss_dssp             EETTTTEEE-EE-EEEEEEEEE
T ss_pred             EEcCCCceE-EE-EEEEEecCC
Confidence            998866532 22 345555533

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=99.34  E-value=6.1e-12  Score=86.69  Aligned_cols=89  Identities=17%  Similarity=0.192  Sum_probs=64.2

Q ss_pred             eEEEeCCeEEEEeeCCCCCCCceeEeEEeecceee--e-cc------cCCCceEEEccCccEEEeccCCCCCCcceEEEe
Q psy5694          29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI--Y-LN------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        29 ~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i--~-~~------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a   99 (129)
                      +.+..|.+|.|.|.+.+. ......+.|.+++..+  + +.      ..-.+|+.+.+++.|.|+|++.+|+| .|+|.+
T Consensus        13 v~~~~G~~v~L~C~~~~~-~~~~~~v~W~k~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G-~Y~C~v   90 (117)
T 3q0h_A           13 ISAEKGGSIILQCHLSST-TAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVNDTG-EYFCIY   90 (117)
T ss_dssp             EEEETTCCEEECEEEESC-CCEEEEEEEEETTEEEEEEETTTEEECCGGGTTTEEECSTTCEEECSCCGGGCE-EEEEEE
T ss_pred             EEEecCCCEEEEEEecCC-CCCEEEEEEEeCCEEEEEEECCCCceeCccccCcEEeCCceEEEEeeCChhhCE-EEEEEE
Confidence            389999999999998653 2334678999986433  1 10      01247888878899999999999997 999997


Q ss_pred             ecccCCeEEecccceEEEEecCC
Q psy5694         100 VNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus       100 ~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      .+...|..  +. .+.|.|..|+
T Consensus        91 ~~~~~g~~--~~-~~~L~V~~pp  110 (117)
T 3q0h_A           91 HTYPDGTY--TG-RIFLEVLESS  110 (117)
T ss_dssp             EEETTCCE--EE-EEEEEEECC-
T ss_pred             EECCCCCe--EE-EEEEEEEccC
Confidence            65433553  33 4588998765

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.34  E-value=1.5e-12  Score=88.29  Aligned_cols=96  Identities=14%  Similarity=0.113  Sum_probs=64.4

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc--cCCCc-eEE----EccCccEEEeccCCCCCCc
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN--TDTGG-KYV----VLSSGDLYVFNATPNDGYK   93 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~--~~~~~-ry~----vlpsG~L~I~nv~~~D~g~   93 (129)
                      ....+.+.+.+.+|+++.|.|.+.+.+.. .+.+.|.+++..+...  ...+. .+.    ...++.|.|.+++.+|+| 
T Consensus        10 v~i~p~~~v~v~~G~~v~L~C~~~g~p~~-~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG-   87 (122)
T 3s35_X           10 VVLSPSHGIELSVGEKLVLNCTARTELNV-GIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQG-   87 (122)
T ss_dssp             EEEESCSCEEEEETCCEEEEEEEEECTTC-CCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCE-
T ss_pred             EEEcCCCCEEEecCCeEEEEEEEEcCCCC-cEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCE-
Confidence            33445555588999999999999764432 3568999988533210  00111 111    124568999999999997 


Q ss_pred             ceEEEeecccCCeEEecccceEEEEecCC
Q psy5694          94 SYRCRTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        94 ~Y~C~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      .|.|.|.|.. |....   .+.|.|.++.
T Consensus        88 ~Y~C~a~n~~-g~~~~---~~~l~V~~~p  112 (122)
T 3s35_X           88 LYTCAASSGL-MTKKN---STFVRVHEKP  112 (122)
T ss_dssp             EEEEEEECSS-CEEEE---EEEEEEEEEE
T ss_pred             EEEEEEccCC-CceEE---EEEEEEeccC
Confidence            9999999988 66433   4578887654

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.34  E-value=4.1e-12  Score=91.41  Aligned_cols=80  Identities=15%  Similarity=0.193  Sum_probs=64.8

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccC-c---cEEEeccCCCCCCcceEEEeecccCC
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS-G---DLYVFNATPNDGYKSYRCRTVNKITG  105 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlps-G---~L~I~nv~~~D~g~~Y~C~a~N~ltg  105 (129)
                      .+..|+++.|.|.+.+.|+   +.+.|++++..|..    +.+|.+..+ |   .|.|.+++.+|.| .|+|.|.|.+ |
T Consensus       128 ~v~~g~~~~l~C~~~g~p~---p~v~W~~~~~~~~~----~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~N~~-g  198 (212)
T 2r15_A          128 TIQEGKALNLTCNVWGDPP---PEVSWLKNEKALAQ----TDHCNLKFEAGRTAYFTINGVSTADSG-KYGLVVKNKY-G  198 (212)
T ss_dssp             EEETTCCEEEEEEEECSSC---CEEEEEETTEEECC----CSSEEEEEETTTEEEEEESSCCGGGCE-EEEEEEEETT-E
T ss_pred             EEccCCeEEEEEEEcCCCC---ceEEEEECCeECcc----CCCEEEEEcCCCEEEEEEcCcchHHCe-EEEEEEEcCC-C
Confidence            8899999999999988774   56999999988743    467777643 4   8999999999997 9999999998 6


Q ss_pred             eEEecccceEEEEecC
Q psy5694         106 ESQASVFQTRLSITGK  121 (129)
Q Consensus       106 e~k~S~~~~~L~V~ep  121 (129)
                      ..  +. ...|.|..|
T Consensus       199 ~~--~~-~~~l~V~~P  211 (212)
T 2r15_A          199 SE--TS-DFTVSVFIP  211 (212)
T ss_dssp             EE--EE-EEEEEEECC
T ss_pred             cE--EE-EEEEEEEcc
Confidence            53  32 457887765

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.34  E-value=5.7e-12  Score=93.18  Aligned_cols=88  Identities=18%  Similarity=0.182  Sum_probs=65.5

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEee--cceeeecc------cCCCceEEEccCccEEEeccCCCCCCcceEEEeec
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQ--DDVNIYLN------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVN  101 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~--d~~~i~~~------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N  101 (129)
                      .+..|+++.|.|..... ....+.+.|.+  ++..|...      ...++|+.++++|.|.|+|++.+|+| .|+|.+.|
T Consensus        10 ~g~~G~sv~L~~~~~~~-~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG-~Y~c~~~n   87 (182)
T 1hnf_A           10 WGALGQDINLDIPSFQM-SDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQD-IYKVSIYD   87 (182)
T ss_dssp             EEETTSCEEECCTTCCC-CSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCE-EEEEEEEE
T ss_pred             EEecCCCEEEeCCcccc-cCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCE-EEEEEEEe
Confidence            88999999999954211 12257899999  87655210      01368999999999999999999997 99999999


Q ss_pred             ccCCeEEecccceEEEEecC
Q psy5694         102 KITGESQASVFQTRLSITGK  121 (129)
Q Consensus       102 ~ltge~k~S~~~~~L~V~ep  121 (129)
                      .. |....+. ...|.|.++
T Consensus        88 ~~-g~~~~~~-~~~L~V~~~  105 (182)
T 1hnf_A           88 TK-GKNVLEK-IFDLKIQER  105 (182)
T ss_dssp             TT-SCEEEEE-EEEEEEECC
T ss_pred             CC-CceeEEE-EEEEEEcCc
Confidence            86 5533333 457888765

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.33  E-value=2.5e-12  Score=90.47  Aligned_cols=95  Identities=16%  Similarity=0.292  Sum_probs=69.6

Q ss_pred             eeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-eeeecc---cCCCceEEEcc----CccEEEeccCCCC
Q psy5694          19 QKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLN---TDTGGKYVVLS----SGDLYVFNATPND   90 (129)
Q Consensus        19 q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-~~i~~~---~~~~~ry~vlp----sG~L~I~nv~~~D   90 (129)
                      +.|...+.+. .|.+|.+|.|.|.+.+.+.   +.+.|.+.+ ..|...   ...++||.+..    ++.|.|+||+.+|
T Consensus        39 ~~~~~~p~~~-~v~~G~~v~L~C~~~~~~~---~~i~W~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D  114 (145)
T 1z9m_A           39 DDSQPWTSDE-TVVAGGTVVLKCQVKDHED---SSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALAD  114 (145)
T ss_dssp             CTTCCBCCCE-EEETTSCEEEEEECSCCTT---CCEEEECTTCCEEEETTEECSCCTTEEEEEECSSEEEEEECSCCGGG
T ss_pred             cceecCCceE-EEEcCCCEEEEEEEcCCCC---cEEEEECCCCcEEEECCceecccCCEEEecCCCCeEEEEECCCChhh
Confidence            5566677777 9999999999999987663   568999533 222110   01247887664    6789999999999


Q ss_pred             CCcceEEEeecccCCeEEecccceEEEEecCCC
Q psy5694          91 GYKSYRCRTVNKITGESQASVFQTRLSITGKLK  123 (129)
Q Consensus        91 ~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~~  123 (129)
                      +| .|.|.+.|.  |..  +. .+.|.|.+++.
T Consensus       115 sG-~Y~C~~~n~--~~~--~~-~~~L~V~~~P~  141 (145)
T 1z9m_A          115 EG-EYTCSIFTM--PVR--TA-KSLVTVLGIPQ  141 (145)
T ss_dssp             CE-EEEEEECSS--SCE--EE-EEEEEEECCCC
T ss_pred             CE-EEEEEEEcC--CCc--eE-EEEEEEEeCCC
Confidence            97 999999998  543  33 56899987653

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.33  E-value=4.5e-12  Score=82.99  Aligned_cols=79  Identities=18%  Similarity=0.219  Sum_probs=59.0

Q ss_pred             eeeeEEEeCCeEEEEeeCC-CCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccC
Q psy5694          26 NYEHNVILGNTAVLRCQIP-SYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT  104 (129)
Q Consensus        26 ~~~~~V~~GntAvL~C~vp-~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~lt  104 (129)
                      .+. .+.+|+++.|.|.+. +.+   .+.+.|++++..+.+     . .....+|.|.|.+++.+|+| .|+|.|.|.. 
T Consensus        18 ~~~-~v~~G~~v~l~C~~~~~~p---~~~v~W~k~~~~~~~-----~-~~~~~~~~L~i~~v~~~D~G-~Y~C~a~n~~-   85 (98)
T 1gl4_B           18 RSQ-SVRPGADVTFICTAKSKSP---AYTLVWTRLHNGKLP-----S-RAMDFNGILTIRNVQPSDAG-TYVCTGSNMF-   85 (98)
T ss_dssp             CEE-EECTTCCEEEEEEEEESSS---CCEEEEEEGGGBCCC-----T-TEEEETTEEEECSCCGGGCE-EEEEEEECSS-
T ss_pred             CCe-EEecCCCEEEEEeCCCCCC---CcEEEEEeCCCCCCC-----c-eeecCCCEEEEeCCChhhCE-EEEEEecCCC-
Confidence            444 789999999999997 344   367999998633221     1 23456899999999999997 9999999998 


Q ss_pred             CeEEecccceEEEEe
Q psy5694         105 GESQASVFQTRLSIT  119 (129)
Q Consensus       105 ge~k~S~~~~~L~V~  119 (129)
                      |...  . .+.|.|+
T Consensus        86 g~~~--~-~~~l~V~   97 (98)
T 1gl4_B           86 AMDQ--G-TATLHVQ   97 (98)
T ss_dssp             CEEE--E-EEEEEEC
T ss_pred             Cccc--c-EEEEEEe
Confidence            6633  2 4477764

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.33  E-value=3.5e-12  Score=92.91  Aligned_cols=90  Identities=20%  Similarity=0.349  Sum_probs=69.0

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEee
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      +...+... .+..|.++.|.|.+.+.|+   +.++|++++..|..   ...++ ...+|.|.|.+++.+|.| .|+|.|.
T Consensus       113 ~~~~~~~~-~~~~g~~v~l~C~~~g~p~---p~i~W~~~~~~~~~---~~~~~-~~~~~~L~i~~v~~~d~G-~Y~C~a~  183 (212)
T 2yd1_A          113 ITQGPGTR-VIEVGHTVLMTCKAIGNPT---PNIYWIKNQTKVDM---SNPRY-SLKDGFLQIENSREEDQG-KYECVAE  183 (212)
T ss_dssp             EEECCCCE-EEETTCCEEECCEEECSSC---CEEEEEETTEECCT---TSTTE-EEETTEEEECSCCGGGCE-EEEEEEE
T ss_pred             eEeCCCce-EeecCCeEEEEEEeccCCC---CeEEEEECCeEccc---CCCeE-EccCCeEEEccCChhhCE-EEEEEee
Confidence            34444555 7888999999999987764   46899999977743   24566 446889999999999997 9999999


Q ss_pred             cccCCeEEecccceEEEEecCC
Q psy5694         101 NKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus       101 N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      |.+ |.. .+. .+.|.|+++.
T Consensus       184 N~~-G~~-~s~-~~~l~V~~~~  202 (212)
T 2yd1_A          184 NSM-GTE-HSK-ATNLYVKVRR  202 (212)
T ss_dssp             ETT-EEE-ECC-CEEEEEEC--
T ss_pred             cCC-Cce-eEE-EEEEEEEecc
Confidence            998 653 233 5799998764

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.33  E-value=4.7e-12  Score=90.82  Aligned_cols=91  Identities=22%  Similarity=0.339  Sum_probs=68.2

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeC-CCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEe
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQI-PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~v-p~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a   99 (129)
                      +...+.+. .+..|+++.|.|.+ .+.|+   +.++|.+|+..|..   .+.++ ...+|.|.|.+++.+|.| .|+|.|
T Consensus       114 ~~~~~~~~-~~~~g~~~~l~C~~~~~~p~---~~v~W~~~~~~l~~---~~~~~-~~~~~~L~i~~~~~~d~G-~Y~C~a  184 (212)
T 2v9r_A          114 FRQNPSDV-MVAVGEPAVMECQPPRGHPE---PTISWKKDGSPLDD---KDERI-TIRGGKLMITYTRKSDAG-KYVCVG  184 (212)
T ss_dssp             CSBCCCCE-EEETTSCEEEECBCCCEESC---CEEEEEETTEEECT---TSTTE-EEETTEEEESSCCGGGCE-EEEEEE
T ss_pred             ceeCCCce-EecCCCcEEEEEecCCCCCC---CEEEEEECCccCCC---CcceE-EccCCeEEEeeCCHhhCe-eEEEEE
Confidence            44455566 88999999999998 54453   57899999988743   23444 456899999999999997 999999


Q ss_pred             ecccCCeEEecccceEEEEecCCC
Q psy5694         100 VNKITGESQASVFQTRLSITGKLK  123 (129)
Q Consensus       100 ~N~ltge~k~S~~~~~L~V~ep~~  123 (129)
                      .|.. |.. .+. ...|.|.+++.
T Consensus       185 ~N~~-g~~-~s~-~~~l~V~~~P~  205 (212)
T 2v9r_A          185 TNMV-GER-ESE-VAELTVLERPS  205 (212)
T ss_dssp             EETT-EEE-ECC-CEEEEEEC---
T ss_pred             eccc-Cce-ecc-eEEEEEEeCch
Confidence            9987 653 343 57999987654

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=99.32  E-value=1e-11  Score=82.39  Aligned_cols=89  Identities=19%  Similarity=0.334  Sum_probs=61.8

Q ss_pred             eEEEeCCeEEEEeeC-CCCCCCc-eeEeEEeecce----eeecc-----cCCCceEEEcc--------CccEEEeccCCC
Q psy5694          29 HNVILGNTAVLRCQI-PSYMSEY-IIVTSWIQDDV----NIYLN-----TDTGGKYVVLS--------SGDLYVFNATPN   89 (129)
Q Consensus        29 ~~V~~GntAvL~C~v-p~~~~~~-v~v~sW~~d~~----~i~~~-----~~~~~ry~vlp--------sG~L~I~nv~~~   89 (129)
                      +.+.+|.+|.|.|.+ ++.+... ...+.|.+++.    .++..     ....+|+.+.+        ++.|.|.|++.+
T Consensus        10 v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~~   89 (118)
T 3udw_C           10 VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVE   89 (118)
T ss_dssp             EEEETTSCEEECCEEECCTTCCCEEEEEEEEETTCSBCSEEEETTTEEEETTCSSEEETTCCTTSCCCBCCEEECSCCGG
T ss_pred             EEEeeCCcEEEEEEeECCCCCCCceEEEEEEEcCCCceEEEEeCCCCCccCCcCcEEEecccccCCCCCcEEEEeecChH
Confidence            489999999999999 5444333 34689999741    11110     01156887776        678999999999


Q ss_pred             CCCcceEEEeecccCCeEEecccceEEEEecC
Q psy5694          90 DGYKSYRCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        90 D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      |+| .|.|.+.|.-.|.  .+. ...|.|..+
T Consensus        90 D~G-~Y~C~v~~~~~~~--~~~-~~~L~V~~~  117 (118)
T 3udw_C           90 DEG-NYTCLFVTFPQGS--RSV-DIWLRVLAK  117 (118)
T ss_dssp             GCE-EEEEEEEEETTEE--EEE-EEEEEEEC-
T ss_pred             HCe-EEEEEEEECCCCC--ccc-eEEEEEEeC
Confidence            997 9999999843343  233 558888765

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.31  E-value=3.6e-12  Score=99.98  Aligned_cols=90  Identities=11%  Similarity=0.235  Sum_probs=72.5

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEe
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a   99 (129)
                      .+...+.+. .+..|.++.|.|.+.+.|+   +.++|.+++..|.+    +.++.+..++.|.|.+++.+|.| .|+|.|
T Consensus       314 ~~~~~~~~~-~~~~g~~v~l~C~~~g~p~---p~v~W~~~g~~~~~----~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a  384 (403)
T 3laf_A          314 WFLNHPSNL-YAYESMDIEFECAVSGKPV---PTVNWMKNGDVVIP----SDYFQIVGGSNLRILGVVKSDEG-FYQCVA  384 (403)
T ss_dssp             EEEECCCCE-ECCTTCCEEECCEEEEESC---CEEEEEETTEECCC----SSSEEEETTTEEEESSCCGGGCE-EEEEEE
T ss_pred             cEeecCcce-EEecCCeEEEEEEEeeccC---CEEEEEECCEECCC----CCcEEEecCccEEEeccccccCE-EEEEEE
Confidence            344555566 7889999999999987764   46899999977743    46788888899999999999997 999999


Q ss_pred             ecccCCeEEecccceEEEEecCC
Q psy5694         100 VNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus       100 ~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      .|.+ |+...   .+.|.|++|.
T Consensus       385 ~N~~-G~~~~---~~~l~V~~P~  403 (403)
T 3laf_A          385 ENEA-GNAQS---SAQLIVPKPA  403 (403)
T ss_dssp             EETT-EEEEE---EEEEECCCC-
T ss_pred             EcCC-ceEEE---EEEEEEeCCC
Confidence            9998 66433   4599998873

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.31  E-value=3.1e-12  Score=91.63  Aligned_cols=93  Identities=18%  Similarity=0.170  Sum_probs=69.4

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCC-CCCCCceeEeEEeecceeeecccCCCceEEE--cc--------CccEEEeccCC
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIP-SYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV--LS--------SGDLYVFNATP   88 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp-~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~v--lp--------sG~L~I~nv~~   88 (129)
                      .|...+++. .+.+|.++.|.|.+. +.+.   +.+.|++|+..|...  ...++.+  .+        ++.|.|.+++.
T Consensus         4 ~~~~~p~~~-~v~~G~~v~l~C~~~~~~p~---~~v~W~~~g~~l~~~--~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   77 (195)
T 2c5d_C            4 PFVGNPGNI-TGARGLTGTLRCQLQVQGEP---PEVHWLRDGQILELA--DSTQTQVPLGEDEQDDWIVVSQLRITSLQL   77 (195)
T ss_dssp             SEEECCCCE-EECTTCCEEEEEEEEEESSC---CCCEEEETTEECCSC--EEEEEEEECSSSTTSEEEEEEEEEESSCCS
T ss_pred             eeccChhhe-EEecCCcEEEecccccCCCC---cEEEEEECCEEcccC--CCCceEEEEccccccceeeccEEEEEeccc
Confidence            456677777 999999999999998 6553   568999999877532  1123433  34        36899999999


Q ss_pred             CCCCcceEEEeecccCCeEEecccceEEEEecCC
Q psy5694          89 NDGYKSYRCRTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      +|+| .|+|.+.|.. |. ..+. .+.|.|..++
T Consensus        78 ~d~G-~Y~C~~~~~~-~~-~~~~-~~~l~V~~~p  107 (195)
T 2c5d_C           78 SDTG-QYQCLVFLGH-QT-FVSQ-PGYVGLEGLP  107 (195)
T ss_dssp             TTCE-EEEEEEEETT-EE-EECC-CEEEEECCSC
T ss_pred             cCCc-EEEEEEEeCC-Cc-eecc-cEEEEEecCC
Confidence            9997 9999999975 43 3343 5788887653

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.31  E-value=7.7e-12  Score=90.69  Aligned_cols=95  Identities=23%  Similarity=0.397  Sum_probs=70.5

Q ss_pred             eeeeEeeeeeeEEEeCCeEEEEeeC-CCCCCCceeEeEEeecceeeeccc----CCCceEEEccCccEEEeccCCCCCCc
Q psy5694          19 QKYEINVNYEHNVILGNTAVLRCQI-PSYMSEYIIVTSWIQDDVNIYLNT----DTGGKYVVLSSGDLYVFNATPNDGYK   93 (129)
Q Consensus        19 q~y~~~v~~~~~V~~GntAvL~C~v-p~~~~~~v~v~sW~~d~~~i~~~~----~~~~ry~vlpsG~L~I~nv~~~D~g~   93 (129)
                      ..+...+... .+..|.++.|.|.+ .+.|+   +.++|.+++..|....    ...+++.+..+|.|.|.+++.+|.| 
T Consensus       109 ~~~~~~~~~~-~~~~g~~v~l~C~~~~g~p~---~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-  183 (217)
T 2vr9_A          109 DDFRVEPKDT-RVAKGETALLECGPPKGIPE---PTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEG-  183 (217)
T ss_dssp             CSCSBCCCCE-EECTTSCEEECCBCCCEESC---CEEEEEETTEEECCCCCC---CCCSEEEETTTEEEESSCCSTTCE-
T ss_pred             CCcEECCCcc-EEcCCCeEEEEEECCCCCCC---CeEEEEECCcCCCcccccccccCCcEEecCCCcEEEeeCCHHHCe-
Confidence            3455556666 88999999999999 44443   5699999997774211    1357888889999999999999997 


Q ss_pred             ceEEEeecccCCeEEecccceEEEEecC
Q psy5694          94 SYRCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        94 ~Y~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      .|+|.|.|.+ |.. .++ ...|++...
T Consensus       184 ~Y~C~a~N~~-G~~-~~~-~~~lv~~~~  208 (217)
T 2vr9_A          184 NYKCIAQNLV-GTR-ESS-YAKLIVQVK  208 (217)
T ss_dssp             EEEEEEEETT-EEE-ECC-CEEEEEC--
T ss_pred             EEEEEEEccc-cee-ccc-cEEEEEEee
Confidence            9999999998 663 333 556666543

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.31  E-value=9.2e-12  Score=88.82  Aligned_cols=90  Identities=22%  Similarity=0.366  Sum_probs=68.8

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEc--cCc--cEEEeccCCCCCCcce
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL--SSG--DLYVFNATPNDGYKSY   95 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl--psG--~L~I~nv~~~D~g~~Y   95 (129)
                      .|...+.+. .+.+|+++.|.|.+.+.+.   +.++|++++..|..   .+.+|.+.  .+|  .|.|.+++.+|+| .|
T Consensus         6 ~~~~~~~~~-~v~~G~~v~l~C~~~~~p~---~~v~W~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y   77 (197)
T 2j8h_A            6 HFKEELRNL-NVRYQSNATLVCKVTGHPK---PIVKWYRQGKEIIA---DGLKYRIQEFKGGYHQLIIASVTDDDAT-VY   77 (197)
T ss_dssp             EEEECCCCE-EEETTSCEEEEEEEECSSC---CEEEEEETTEECCC---CSSSEEEEEETTTEEEEEECSCCGGGCS-EE
T ss_pred             EEEEcCCcc-EEcCCCEEEEEEEEeecCC---CEEEEEECCEECcc---CCCcEEEEEcCCCEEEEEECcCCHHhCE-EE
Confidence            345556666 8999999999999987663   56999999977743   34677664  355  8999999999998 99


Q ss_pred             EEEeecccCCeEEecccceEEEEecC
Q psy5694          96 RCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        96 ~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      +|.+.|.. |..  +. ...|.|..+
T Consensus        78 ~C~~~n~~-g~~--~~-~~~l~V~~~   99 (197)
T 2j8h_A           78 QVRATNQG-GSV--SG-TASLEVEVP   99 (197)
T ss_dssp             EEEEEETT-EEE--EE-EEEEEEEEE
T ss_pred             EEEEEECC-Cce--eE-EEEEEEcCC
Confidence            99999986 553  33 557777654

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.30  E-value=4.1e-11  Score=85.55  Aligned_cols=89  Identities=21%  Similarity=0.397  Sum_probs=67.0

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEee--cceeeecccCCCceEEEccCc---cEEEeccC-CCCCCcc
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQ--DDVNIYLNTDTGGKYVVLSSG---DLYVFNAT-PNDGYKS   94 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~--d~~~i~~~~~~~~ry~vlpsG---~L~I~nv~-~~D~g~~   94 (129)
                      +...+.+. .+..|.++.|.|.+.+.|+   +.++|.+  ++..+.. ...++||.+..++   .|.|.+++ .+|.| .
T Consensus        95 ~~~~~~~~-~~~~g~~v~l~C~~~g~p~---p~i~W~~~~~g~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G-~  168 (190)
T 2wv3_A           95 ITGHKRSE-NKNEGQDAMMYCKSVGYPH---PEWMWRKKENGVFEEI-SNSSGRFFIINKENYTELNIVNLQITEDPG-E  168 (190)
T ss_dssp             EEEECSEE-EEETTSCEEEEEEEECSSC---CEEEEEEEETTEEEEC-CCTTSCEEEEECSSEEEEEECSCCTTTSCE-E
T ss_pred             ccccCCcc-eeeCCCcEEEEEEeCccCC---CceEEEEcCCCceeee-ecCCCeEEEecCCCeeEEEEEeccccCCCE-E
Confidence            44445556 7899999999999987774   5789999  5565532 2356889887655   59999999 79997 9


Q ss_pred             eEEEeecccCCeEEecccceEEEEe
Q psy5694          95 YRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        95 Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      |+|.|.|.+ |....   ...|.|+
T Consensus       169 Y~C~a~N~~-g~~~~---~~~l~V~  189 (190)
T 2wv3_A          169 YECNATNSI-GSASV---STVLRVR  189 (190)
T ss_dssp             EEEEEECSS-CEEEE---EEEEEEE
T ss_pred             EEEEEEecC-Cccee---EEEEEEE
Confidence            999999998 65333   3466664

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.30  E-value=2.2e-11  Score=87.49  Aligned_cols=92  Identities=15%  Similarity=0.203  Sum_probs=67.5

Q ss_pred             eEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeeccee-----e----------ecccCCCceEEEccCccEEEecc
Q psy5694          22 EINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVN-----I----------YLNTDTGGKYVVLSSGDLYVFNA   86 (129)
Q Consensus        22 ~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~-----i----------~~~~~~~~ry~vlpsG~L~I~nv   86 (129)
                      .+.+... .|.+|+++.|.|...+.+   .+.+.|++++..     |          .......+|+.+..+|.|.|.|+
T Consensus         3 ~i~~~~~-~v~~G~~v~L~C~~~~~~---~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v   78 (208)
T 3r4d_A            3 TIEAVPP-QVAEDNNVLLLVHNLPLA---LGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMI   78 (208)
T ss_dssp             EEEEESS-EEETTCCEEEEEECCCSS---CSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSC
T ss_pred             cccCccc-eeecCCcEEEEEeCCCCC---ceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccc
Confidence            4455566 899999999999966544   357899987421     1          00112357999999999999999


Q ss_pred             CCCCCCcceEEEeecccCCeEEecccceEEEEecC
Q psy5694          87 TPNDGYKSYRCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        87 ~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      +.+|+| .|+|.+.|...+.  .+. ...|.|.++
T Consensus        79 ~~~D~G-~Y~C~~~~~~~~~--~~~-~~~l~V~~~  109 (208)
T 3r4d_A           79 TMKDMG-VYTLDMTDENYRR--TQA-TVRFHVHQP  109 (208)
T ss_dssp             CGGGCE-EEEEEEECSSCEE--EEE-EEEEEEECC
T ss_pred             cccCCe-EEEEEEEcccCce--eEE-EEEEEeccC
Confidence            999997 9999999986433  233 557888765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.30  E-value=5.5e-12  Score=102.94  Aligned_cols=89  Identities=29%  Similarity=0.393  Sum_probs=66.8

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-eeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      .+.+. .|.+|.++.|.|.+ +.|   .+.++|.+++ ..+.. ...++|+.+.++|.|.|.+|+.+|+| .|+|+|.|.
T Consensus       347 ~~~~~-~v~~G~~v~L~C~~-~~p---~p~i~W~~~~~~~~~~-~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~  419 (440)
T 3zyj_A          347 PPADL-NVTEGMAAELKCRA-STS---LTSVSWITPNGTVMTH-GAYKVRIAVLSDGTLNFTNVTVQDTG-MYTCMVSNS  419 (440)
T ss_dssp             CCCCE-EECTTSCCEECCEE-SST---TSEEEEECTTSCEEES-SSCCSSEEECTTCCEEESSCCSTTCE-EEEEEEECS
T ss_pred             cccce-eeccCceEEEEeec-CCC---CCceEEEeCCCceeec-cCCCceEEEccCCeEEEccCChhhCE-EEEEEEEcC
Confidence            34555 88999999999999 444   3578999966 44432 23457999999999999999999997 999999999


Q ss_pred             cCCeEEecccceEEEEecCCC
Q psy5694         103 ITGESQASVFQTRLSITGKLK  123 (129)
Q Consensus       103 ltge~k~S~~~~~L~V~ep~~  123 (129)
                      . |+...   .+.+.|.++..
T Consensus       420 ~-G~~~~---~~~~~v~~~~~  436 (440)
T 3zyj_A          420 V-GNTTA---SATLNVTGTHH  436 (440)
T ss_dssp             S-CEEEE---EEEEEEC----
T ss_pred             C-CcEEE---EEEEEEecccc
Confidence            8 76433   45788876643

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.30  E-value=7.4e-12  Score=100.28  Aligned_cols=88  Identities=19%  Similarity=0.379  Sum_probs=67.6

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      .+.+. .|.+|++|.|.|.+.+ |+   +.++|.+++..+......++|+.+ .+|.|.|.+|+.+|+| .|+|+|.|..
T Consensus       252 ~~~~v-~v~~G~~~~l~C~~~g-p~---p~i~W~~~~~~~~~~~~~~~r~~~-~~~~L~I~~v~~~D~G-~Y~C~a~N~~  324 (361)
T 2xot_A          252 KESAW-EAHLGDTLTIRCDTKQ-QG---MTKVWVSPSNEQVLSQGSNGSVSV-RNGDLFFKKVQVEDGG-VYTCYAMGET  324 (361)
T ss_dssp             CCCCC-EEETTCCEEECCCCSS-TT---CEEEEECTTSCBCCSCCSSSSEEE-ETTEEEESSCCTTSCE-EEEEEEECSS
T ss_pred             cccCc-eecCCCeEEEEeEeeC-CC---CeEEEEeCCCeeEeecccCCceEe-ecCeEEEeecCcccCE-EEEEEEecCC
Confidence            34455 8999999999999976 53   568999987443222234568888 9999999999999998 9999999995


Q ss_pred             CCeEEecccceEEEEecCC
Q psy5694         104 TGESQASVFQTRLSITGKL  122 (129)
Q Consensus       104 tge~k~S~~~~~L~V~ep~  122 (129)
                       |+.  +. .+.|.|..+.
T Consensus       325 -g~~--~~-~~~l~V~~~~  339 (361)
T 2xot_A          325 -FNE--TL-SVELKVYNFT  339 (361)
T ss_dssp             -CEE--EE-EEEEEEESSC
T ss_pred             -Ccc--EE-EEEEEEEeee
Confidence             663  33 4588887643

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.30  E-value=9.9e-12  Score=87.95  Aligned_cols=89  Identities=24%  Similarity=0.368  Sum_probs=69.1

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc---cEEEeccCCCCCCcceE
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVFNATPNDGYKSYR   96 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG---~L~I~nv~~~D~g~~Y~   96 (129)
                      .+...+++. .+..|+.+.|.|.+.+.+.   +.+.|++++..+.    .+.++.+..+|   .|.|.+++.+|+| .|+
T Consensus         9 ~~~~~~~~~-~v~~G~~v~l~C~~~~~p~---~~v~W~~~~~~~~----~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~   79 (197)
T 3lcy_A            9 GIRKEMKDV-TTKLGEAAQLSCQIVGRPL---PDIKWYRFGKELI----QSRKYKMSSDGRTHTLTVMTEEQEDEG-VYT   79 (197)
T ss_dssp             EEEECCCCE-EEETTSEEEEEEEEEEESC---CEEEEEETTEEEC----CCSSEEEEESSSEEEEEEECCSGGGCE-EEE
T ss_pred             cccccCCce-EEeCCCcEEEEEEEecCCC---CEEEEEECCEECC----CCccEEEEeCCCEEEEEEecCCccCCE-EEE
Confidence            355566666 8999999999999976553   5799999997774    35788888777   7999999999997 999


Q ss_pred             EEeecccCCeEEecccceEEEEecC
Q psy5694          97 CRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        97 C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      |.+.|.. |....   ...|.|..+
T Consensus        80 C~~~n~~-~~~~~---~~~l~v~~~  100 (197)
T 3lcy_A           80 CIATNEV-GEVET---SSKLLLQAT  100 (197)
T ss_dssp             EEEECSS-CEEEE---EEEEEEEEE
T ss_pred             EEEECCC-CceeE---EEEEEEEcC
Confidence            9999987 55332   346666543

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.30  E-value=1.3e-11  Score=87.65  Aligned_cols=90  Identities=23%  Similarity=0.348  Sum_probs=67.0

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEee---cc-eeeecccCCCceEEEccCc---cEEEeccC-CCCCC
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQ---DD-VNIYLNTDTGGKYVVLSSG---DLYVFNAT-PNDGY   92 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~---d~-~~i~~~~~~~~ry~vlpsG---~L~I~nv~-~~D~g   92 (129)
                      +...+... .+..|+++.|.|.+.+.|+  .+.+.|++   ++ ..+..  ..++||.+..+|   .|.|.+++ .+|.|
T Consensus        86 ~~~~~~~~-~~~~g~~~~l~C~~~g~p~--~~~i~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~v~~~~d~G  160 (184)
T 3b5h_A           86 VKAVKSSE-HINEGETAMLVCKSESVPP--VTDWAWYKITDSEDKALMN--GSESRFFVSSSQGRSELHIENLNMEADPG  160 (184)
T ss_dssp             CEESCSEE-EECTTSCEEEEEECCCSSC--CCEEEEEECCSSSCEECCT--TGGGTEEEEEETTEEEEEECSCCTTTSSE
T ss_pred             eeecCCCc-EEcCCCcEEEEEEECCCCC--CCeEEEEEcCCCCCEEeec--CCCCEEEEEecCCeeEEEEeeccccccCc
Confidence            33344455 7899999999999988773  25789999   45 44422  235899998766   79999999 99997


Q ss_pred             cceEEEeecccCCeEEecccceEEEEec
Q psy5694          93 KSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        93 ~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                       .|+|.|.|.+ |....   ...|.|.+
T Consensus       161 -~Y~C~a~N~~-g~~~~---~~~l~V~~  183 (184)
T 3b5h_A          161 -QYRCNGTSSK-GSDQA---IITLRVRS  183 (184)
T ss_dssp             -EEEEEEEETT-EEEEE---EEEEEEC-
T ss_pred             -eEEEEEEeCC-CcceE---EEEEEEec
Confidence             9999999998 66333   35787764

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=99.30  E-value=6.5e-12  Score=88.87  Aligned_cols=99  Identities=14%  Similarity=0.132  Sum_probs=67.2

Q ss_pred             eEEeeeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--eeeecccCCCceEEEccCcc---EEEeccCCC
Q psy5694          15 PVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VNIYLNTDTGGKYVVLSSGD---LYVFNATPN   89 (129)
Q Consensus        15 AVv~q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~~i~~~~~~~~ry~vlpsG~---L~I~nv~~~   89 (129)
                      +...+.....+... .|.+|++|.|.|.+.+.     +.+.|+++.  ..+..-....+||.+..+|.   |.|.+++.+
T Consensus        14 g~~~~~v~q~p~~~-~v~~G~~v~L~C~~~~~-----~~v~W~r~~~g~~~~~l~~~~~r~~~~~~~~~~~L~I~~~~~~   87 (133)
T 3khq_A           14 GSPCSQIWQHPRFA-AKKRSSMVKFHCYTNHS-----GALTWFRKRGSQQPQELVSEEGRIVQTQNGSVYTLTIQNIQYE   87 (133)
T ss_dssp             ---CCSEEEECSEE-EECTTCCEEEEEEESSS-----SCEEEEEECTTSCCEECCCTTTTEEEEEETTEEEEEECSCCGG
T ss_pred             CccCCceEEcCceE-EEeCCCeEEEEEEeCCC-----CEEEEEEeCCCCCCEEEEEeCCCEEEEcCCCEEEEEECCCChH
Confidence            34445566667777 89999999999999765     468999873  21110012468999877665   999999999


Q ss_pred             CCCcceEEEeecccCC--eEEecccceEEEEecCC
Q psy5694          90 DGYKSYRCRTVNKITG--ESQASVFQTRLSITGKL  122 (129)
Q Consensus        90 D~g~~Y~C~a~N~ltg--e~k~S~~~~~L~V~ep~  122 (129)
                      |+| .|.|.+.|.. |  +...+. .++|.|.+++
T Consensus        88 DsG-~Y~C~a~n~~-g~~~~~~g~-gt~L~V~~~p  119 (133)
T 3khq_A           88 DNG-IYFCKQKCDS-ANHNVTDSC-GTELLVLGFS  119 (133)
T ss_dssp             GCE-EEEEEESSCC--------CC-CEEEEEC---
T ss_pred             HCE-EEEEEEEeCC-CCcceeECC-CEEEEEEecc
Confidence            997 9999999986 3  222344 6799998743

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=4.3e-12  Score=86.08  Aligned_cols=88  Identities=17%  Similarity=0.203  Sum_probs=66.7

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEc-cCc---cEEEeccCCCCCCcce
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL-SSG---DLYVFNATPNDGYKSY   95 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl-psG---~L~I~nv~~~D~g~~Y   95 (129)
                      .|...+++. .|.+|.+|.|.|.+.+.+.   +.+.|++|+..|.+    +.||.+. .+|   .|.|.+++.+|+| .|
T Consensus        15 ~~~~~~~~~-~v~~G~~v~l~C~~~g~p~---p~v~W~k~g~~l~~----~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y   85 (115)
T 2cr6_A           15 HIIEDLEDV-DVQEGSSATFRCRISPANY---EPVHWFLDKTPLHA----NELNEIDAQPGGYHVLTLRQLALKDSG-TI   85 (115)
T ss_dssp             EEEECCCEE-EEETTSCEECCCEEESTTC---CSCEEEESSCEECC----SSSCCBCCBTTTBCCBEECSCCTTTCE-EE
T ss_pred             eEeccCccE-EEeCCCcEEEEEEEcCCCC---CccEEEECCEECCC----CCcEEEEEcCCCEEEEEEcCCChhhCE-EE
Confidence            355566777 9999999999999987663   46899999988753    4566664 223   6999999999997 99


Q ss_pred             EEEeecccCCeEEecccceEEEEecCCCC
Q psy5694          96 RCRTVNKITGESQASVFQTRLSITGKLKS  124 (129)
Q Consensus        96 ~C~a~N~ltge~k~S~~~~~L~V~ep~~~  124 (129)
                      +|.+     |+.  +. .+.|.|.++...
T Consensus        86 ~C~~-----g~~--~~-~~~L~V~~~p~~  106 (115)
T 2cr6_A           86 YFEA-----GDQ--RA-SAALRVTEKPSV  106 (115)
T ss_dssp             EEEE-----TTE--EC-CEEEEEECCSSC
T ss_pred             EEEE-----CCe--eE-EEEEEEECCCce
Confidence            9993     342  22 569999977654

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.29  E-value=7.8e-12  Score=98.04  Aligned_cols=98  Identities=19%  Similarity=0.311  Sum_probs=78.0

Q ss_pred             EeeeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEecc-----CCCCC
Q psy5694          17 VKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNA-----TPNDG   91 (129)
Q Consensus        17 v~q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv-----~~~D~   91 (129)
                      ....|..++++. .|.+|+++.|.|.+.+..+  .+.+.|++|+..|...  .+.|+.+.++|.|.|.++     +.+|+
T Consensus        20 ~~~~~~~~P~~~-~v~~G~~v~L~C~~~~~~p--~~~v~W~k~g~~~~~~--~~~~~~~~~~~~l~i~~~~~~~~~~~D~   94 (403)
T 3laf_A           20 RSLHFVSEPSDA-VTMRGGNVLLNCSAESDRG--VPVIKWKKDGLILALG--MDDRKQQLPNGSLLIQNILHSRHHKPDE   94 (403)
T ss_dssp             CSSEEEECCCCE-EECTTCCEEECCEEECTTC--CCEEEEEETTEECCTT--SCTTEEECTTSCEEECSCCCBTTBCSSC
T ss_pred             eeEEEEeCCCce-EEecCCcEEEEEEcCCCCC--CceEEEEECCEECccC--CcccEEEecCCcEEEeeeeccCCCCCcc
Confidence            346788899998 9999999999999976432  3579999999887542  467899999999999999     67799


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEecCC
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      | .|+|.|.|...|. ..+. ...|.|..|.
T Consensus        95 G-~Y~C~~~~~~~~~-~~s~-~~~l~v~~p~  122 (403)
T 3laf_A           95 G-LYQCEASLGDSGS-IISR-TAKVMVAGPL  122 (403)
T ss_dssp             E-EEEEEEECGGGCE-EECC-CEEEEECCCC
T ss_pred             e-EEEEEEEeCCCcc-EEEE-EEEEEecCCC
Confidence            7 9999999876455 3444 6688887654

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.29  E-value=1.7e-11  Score=87.07  Aligned_cols=91  Identities=18%  Similarity=0.306  Sum_probs=69.6

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEee-cceeeecccCCCceEEEc----cCccEEEeccCCCCCCcce
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQ-DDVNIYLNTDTGGKYVVL----SSGDLYVFNATPNDGYKSY   95 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~-d~~~i~~~~~~~~ry~vl----psG~L~I~nv~~~D~g~~Y   95 (129)
                      +...+.+. .+.+|+++.|.|.+.+.++  .+.+.|++ |+..+..   ...|+.+.    .++.|.|.+++.+|+| .|
T Consensus         5 v~~~p~~~-~v~~G~~v~l~C~~~~~~~--~~~v~W~~~~g~~~~~---~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y   77 (191)
T 1epf_A            5 VDIVPSQG-EISVGESKFFLCQVAGDAK--DKDISWFSPNGEKLSP---NQQRISVVWNDDDSSTLTIYNANIDDAG-IY   77 (191)
T ss_dssp             EEEESSSE-EEETTCCEEEEEEECCCSC--CCEEEEECTTSCEECC---BSSSEEEEEEETTEEEEEECSCCGGGCE-EE
T ss_pred             EEecCCCc-EEcCCCCEEEEEECCCCCC--CceEEEEeCCCccccC---CCCeEEEEECCCCceEEEEccCCcccCE-EE
Confidence            45667777 8999999999999987663  35789999 7777643   35677774    3578999999999997 99


Q ss_pred             EEEeecccCCeEEecccceEEEEecC
Q psy5694          96 RCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        96 ~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      +|.+.|..++.  .+. ...|.|.++
T Consensus        78 ~C~~~~~~~~~--~~~-~~~l~v~~~  100 (191)
T 1epf_A           78 KCVVTAEDGTQ--SEA-TVNVKIFQK  100 (191)
T ss_dssp             EEEEEETTTEE--EEE-EEEEEEECC
T ss_pred             EEEEEcCCCcc--eEE-EEEEEeecC
Confidence            99999987443  233 556777654

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.28  E-value=1.2e-11  Score=92.93  Aligned_cols=86  Identities=19%  Similarity=0.402  Sum_probs=67.9

Q ss_pred             eEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccC---ccEEEeccCCCCCCcceEEE
Q psy5694          22 EINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS---GDLYVFNATPNDGYKSYRCR   98 (129)
Q Consensus        22 ~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlps---G~L~I~nv~~~D~g~~Y~C~   98 (129)
                      ...+.+. .+..|.++.|.|.+.+.|+   +.++|.+++..|..    +.+|.+..+   +.|.|.+++.+|.| .|+|.
T Consensus       196 ~~~~~~~-~~~~g~~v~l~C~~~g~p~---~~v~W~~~~~~~~~----~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~  266 (284)
T 2rik_A          196 RKKPHPV-ETLKGADVHLECELQGTPP---FQVSWHKDKRELRS----GKKYKIMSENFLTSIHILNVDSADIG-EYQCK  266 (284)
T ss_dssp             CSCCCCE-EECTTCCEEEEEECBSSSC---CEEEEEETTEEECB----TTTEEEEEETTEEEEEECSCCGGGCE-EEEEE
T ss_pred             eeCCCcc-eecCCCeEEEEEEEEecCC---CEEEEEECCEECcC----CCCEEEEEcCCEEEEEEcCCCcccCE-EEEEE
Confidence            3344455 7889999999999987764   57999999988743    467877765   47999999999997 99999


Q ss_pred             eecccCCeEEecccceEEEEec
Q psy5694          99 TVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        99 a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      |.|.+ |...  . .+.|.|++
T Consensus       267 a~N~~-G~~~--~-~~~l~V~~  284 (284)
T 2rik_A          267 ASNDV-GSYT--C-VGSITLKA  284 (284)
T ss_dssp             EEETT-EEEE--E-EEEEEECC
T ss_pred             EEeCC-Ccee--E-EEEEEEcC
Confidence            99998 6633  2 45888875

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=99.28  E-value=1.6e-11  Score=81.69  Aligned_cols=87  Identities=23%  Similarity=0.303  Sum_probs=62.4

Q ss_pred             EEEeCCeEEEEeeCCCCCCC-ceeEeEEeecc-------eee--ec--------ccCCCceEEEccC------ccEEEec
Q psy5694          30 NVILGNTAVLRCQIPSYMSE-YIIVTSWIQDD-------VNI--YL--------NTDTGGKYVVLSS------GDLYVFN   85 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~-~v~v~sW~~d~-------~~i--~~--------~~~~~~ry~vlps------G~L~I~n   85 (129)
                      .+.+|++|.|.|.+...+.+ ....+.|.+++       ..+  +.        .....+|+.+..+      +.|.|+|
T Consensus        16 ~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~   95 (126)
T 1eaj_A           16 EKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTN   95 (126)
T ss_dssp             EEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEECS
T ss_pred             EEEeCCCEEEEEEEecCCCCCCceEEEEEEeCCCcCCCceEEEEEeCCeeccccCccccCeeEEEcccccCCeEEEEECc
Confidence            89999999999998665432 12568999875       222  11        1123578888765      8899999


Q ss_pred             cCCCCCCcceEEEeecccCCeEEecccceEEEEecC
Q psy5694          86 ATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        86 v~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      ++.+|+| .|.|.+.|.. |.  .+. ...|.|.+|
T Consensus        96 v~~~D~G-~Y~C~v~~~~-~~--~~~-~~~L~V~~p  126 (126)
T 1eaj_A           96 LQLSDIG-TYQCKVKKAP-GV--ANK-KIHLVVLVK  126 (126)
T ss_dssp             CCGGGCE-EEEEEEEETT-EE--EEE-EEEEEEEC-
T ss_pred             CChHHCe-EEEEEEEcCC-cc--CCc-EEEEEEEcC
Confidence            9999997 9999999974 33  233 568888765

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.28  E-value=3.9e-12  Score=94.82  Aligned_cols=77  Identities=16%  Similarity=0.227  Sum_probs=59.6

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecceeeecccCCCceEEEcc-CccEEEeccCCCCCCcceEEEeecccCCeE
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS-SGDLYVFNATPNDGYKSYRCRTVNKITGES  107 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp-sG~L~I~nv~~~D~g~~Y~C~a~N~ltge~  107 (129)
                      .|.+|.++.|.|.+.+. |   .+.++|++|+..|.+    +.||.... .+.|.|.+++.+|+| .|+|.|.|.+ |+.
T Consensus       127 ~v~~g~~v~l~C~v~g~~P---~p~i~W~k~g~~l~~----~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~~-G~~  197 (207)
T 3rbs_A          127 EVTGECNVLLKCKVANIKK---ETHIVWYKDEREISV----DEKHDFKDGICTLLITEFSKKDAG-IYEVILKDDR-GKD  197 (207)
T ss_dssp             EEETTTEEEEEEEEESCCT---TCEEEEEETTEEECC----CCCCCCSSEEEEEEETTCCGGGCE-EEEEEEEETT-EEE
T ss_pred             EEcCCCcEEEEEEEeCCCC---CCEEEEEECCEECCC----CCceEcCCCEEEEEECCCCcccCE-EEEEEEEcCC-CEE
Confidence            78999999999999877 5   367999999988854    34663321 235999999999997 9999999998 774


Q ss_pred             EecccceEEEE
Q psy5694         108 QASVFQTRLSI  118 (129)
Q Consensus       108 k~S~~~~~L~V  118 (129)
                      ..   .+.|++
T Consensus       198 ~~---~~~L~~  205 (207)
T 3rbs_A          198 KS---RLKLVD  205 (207)
T ss_dssp             EE---EEEECC
T ss_pred             EE---EEEEec
Confidence            33   335543

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.28  E-value=3.3e-11  Score=86.13  Aligned_cols=87  Identities=24%  Similarity=0.365  Sum_probs=66.6

Q ss_pred             EEEeCCeEEEEee-CCCCCCCceeEeEEeecce-eeecccC-----CCceEEEc-cCccEEEeccCCCCCCcceEEEeec
Q psy5694          30 NVILGNTAVLRCQ-IPSYMSEYIIVTSWIQDDV-NIYLNTD-----TGGKYVVL-SSGDLYVFNATPNDGYKSYRCRTVN  101 (129)
Q Consensus        30 ~V~~GntAvL~C~-vp~~~~~~v~v~sW~~d~~-~i~~~~~-----~~~ry~vl-psG~L~I~nv~~~D~g~~Y~C~a~N  101 (129)
                      .+..|+++.|.|. +.+.|+   +.++|++++. .|.....     ...+|.+. .++.|.|.+++.+|.| .|+|.|.|
T Consensus       115 ~~~~g~~~~l~C~~~~~~p~---~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~n  190 (212)
T 1f97_A          115 SVTIGNRAVLTCSEHDGSPP---SEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSG-EYYCQAQN  190 (212)
T ss_dssp             EEETTSCEEEEEECSCCBSC---CEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCE-EEEEEEEC
T ss_pred             ccCCCCeEEEEEEcccCcCC---CEEEEEeCCcccccccccccccccCceeEecCCCceEEEEecChhhCc-EEEEEEcc
Confidence            7899999999999 566564   5789999997 7754211     12456664 5889999999999997 99999999


Q ss_pred             ccCCeEEecccceEEEEecCC
Q psy5694         102 KITGESQASVFQTRLSITGKL  122 (129)
Q Consensus       102 ~ltge~k~S~~~~~L~V~ep~  122 (129)
                      .. |....|. ...|.|++..
T Consensus       191 ~~-g~~~~s~-~~~l~V~~~~  209 (212)
T 1f97_A          191 GY-GTAMRSE-AAHMDAVELN  209 (212)
T ss_dssp             SS-SCCEECC-CEEEEEESSC
T ss_pred             cc-CCccccc-eEEEEEEEee
Confidence            98 6645565 7789988753

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.28  E-value=1.1e-11  Score=88.05  Aligned_cols=86  Identities=17%  Similarity=0.217  Sum_probs=65.2

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEee
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      +.....+. .+..|.++.|.|.+.+.|+   +.++|.+++..|..     +......++.|.|.+++.+|.| .|+|.|.
T Consensus       116 ~~~~~~~~-~~~~g~~~~l~C~~~g~p~---p~v~W~~~~~~~~~-----~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a~  185 (201)
T 3s97_C          116 IVVQFKDV-YALMGQNVTLECFALGNPV---PDIRWRKVLEPMPS-----TAEISTSGAVLKIFNIQLEDEG-IYECEAE  185 (201)
T ss_dssp             EEEECCCE-EEETTCCEEEEEEEEEESC---CEEEEEETTBCCCT-----TCEEETTTTEEEECSCCGGGCE-EEEEEEE
T ss_pred             eEecCCce-EEecCCcEEEEEEccCCCC---CceEEEeCCCcCCC-----ceeecCCCCEEEEccCChhhCE-EEEEEEE
Confidence            44444455 8899999999999977663   57899999976632     2333456889999999999997 9999999


Q ss_pred             cccCCeEEecccceEEEEec
Q psy5694         101 NKITGESQASVFQTRLSITG  120 (129)
Q Consensus       101 N~ltge~k~S~~~~~L~V~e  120 (129)
                      |.+ |..  +. .+.|.|++
T Consensus       186 n~~-g~~--~~-~~~l~V~a  201 (201)
T 3s97_C          186 NIR-GKD--KH-QARIYVQA  201 (201)
T ss_dssp             ETT-EEE--EE-EEEEEEEC
T ss_pred             ecC-Cce--ee-eEEEEEeC
Confidence            998 653  22 45787764

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.28  E-value=1.2e-11  Score=98.40  Aligned_cols=86  Identities=16%  Similarity=0.281  Sum_probs=68.6

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEe
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a   99 (129)
                      .|...+++. .+..|.++.|.|.+.+.|+   +.++|++|+..|..    +.|+.+ .+|.|.|.+++.+|+| .|+|.|
T Consensus       297 ~~~~~~~~~-~v~~g~~v~l~C~~~g~P~---p~i~W~k~g~~l~~----~~~~~~-~~~~L~i~~v~~~D~G-~Y~C~A  366 (384)
T 3kld_A          297 NWVQIINDI-HVAMEESVFWECKANGRPK---PTYRWLKNGDPLLT----RDRIQI-EQGTLNITIVNLSDAG-MYQCVA  366 (384)
T ss_dssp             EEEECCCCE-EECTTCCEEEECEEEEESC---CEEEEEETTEECCC----BTTEEE-ETTEEEESSCCGGGCE-EEEEEE
T ss_pred             ccccCCCce-EecCCCCEEEEeECCccCC---CeEEEEECCEECCC----CccEEE-eCCEEEEeecChhhCE-EEEEEE
Confidence            344455666 8899999999999987764   67899999988743    467754 6899999999999997 999999


Q ss_pred             ecccCCeEEecccceEEEEe
Q psy5694         100 VNKITGESQASVFQTRLSIT  119 (129)
Q Consensus       100 ~N~ltge~k~S~~~~~L~V~  119 (129)
                      .|.+ |....   .+.|.|.
T Consensus       367 ~N~~-G~~~~---~a~L~V~  382 (384)
T 3kld_A          367 ENKH-GVIFS---SAELSVI  382 (384)
T ss_dssp             EETT-EEEEE---EEEEEEC
T ss_pred             EeCC-ceEEe---ceEEEEe
Confidence            9998 77433   4588875

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=99.27  E-value=9.1e-12  Score=85.34  Aligned_cols=87  Identities=21%  Similarity=0.292  Sum_probs=59.6

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCC-ceeEeEEeecc----------------eeeecccCCCceEEEccCc---
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSE-YIIVTSWIQDD----------------VNIYLNTDTGGKYVVLSSG---   79 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~-~v~v~sW~~d~----------------~~i~~~~~~~~ry~vlpsG---   79 (129)
                      ...++....+.+.+|++|.|.|.+...+.+ ....+.|.+++                ..+.....-.+|+.+..++   
T Consensus         3 ~~~v~~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~   82 (128)
T 3r0n_A            3 DVRVQVLPEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQST   82 (128)
T ss_dssp             CCEEECCSEEECCTTSCEEECCEEESCCTTCEEEEEEEECTTSCGGGCEEEEEETTTEEECCSSSSCGGGEEESSCBCCC
T ss_pred             ceEEecCCeEEEEcCCCEEEEEEeecCCCCCcEEEEEEEEeCCCCCCeeEEEEecccCcccccccccCCcEEEecccccc
Confidence            344555555589999999999998655432 34578999962                1111100124788887654   


Q ss_pred             -----------cEEEeccCCCCCCcceEEEeecccCCeE
Q psy5694          80 -----------DLYVFNATPNDGYKSYRCRTVNKITGES  107 (129)
Q Consensus        80 -----------~L~I~nv~~~D~g~~Y~C~a~N~ltge~  107 (129)
                                 .|.|+|++.+|+| .|.|.+.+.-.|..
T Consensus        83 g~~~~~~~~~~sL~I~~v~~~D~G-~Y~C~v~~~~~g~~  120 (128)
T 3r0n_A           83 GQDTEAELQDATLALHGLTVEDEG-NYTCEFATFPKGSV  120 (128)
T ss_dssp             STTCCCBCSBCCEEECSCCGGGCE-EEEEEEEEETTEEE
T ss_pred             ccccccCCCCeEEEEccCCchhCe-EEEEEEEeCCCCCc
Confidence                       8999999999997 99998876544553

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=99.27  E-value=1.6e-11  Score=84.72  Aligned_cols=94  Identities=21%  Similarity=0.302  Sum_probs=60.9

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecce-----ee--e-cc------cCCCceEEEcc------CccEEEe
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDV-----NI--Y-LN------TDTGGKYVVLS------SGDLYVF   84 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~-----~i--~-~~------~~~~~ry~vlp------sG~L~I~   84 (129)
                      ....+.|..|.+|.|.|.+.+.+......+.|.|.+.     .+  . +.      ..-.+|+.+..      ++.|.|+
T Consensus         6 ~p~~vtv~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~   85 (123)
T 4gjt_B            6 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR   85 (123)
T ss_dssp             CCSEEECCTTSEEEECCEECCCTTCCEEEEEEEECCCSSCCCEEEEECSSSCCCBCGGGTTTEECCCSSCCTTBCCEEEE
T ss_pred             cCCEEEEEcCCCEEEEEEEeCCccCceeEEEEEEcCCCCCcceeEEEEecCCcEeCccceeEEEEecCCCcCCEEEEEEC
Confidence            3344589999999999999776655567789998541     11  1 10      00134665532      3569999


Q ss_pred             ccCCCCCCcceEEEeecccCCeEEecccceEEEEecCC
Q psy5694          85 NATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        85 nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      ||+.+|+| .|.|.+.+.-.|..  +. ...|+|-|+.
T Consensus        86 ~v~~~DsG-~Y~C~v~t~~~g~~--~~-~~~L~VlE~~  119 (123)
T 4gjt_B           86 NAVQADEG-EYECRVSTFPAGSF--QA-RLRLRVLEHH  119 (123)
T ss_dssp             SCCSSSCS-EEEEEEEESSSCEE--EE-EEEEEC----
T ss_pred             CCChHHCE-EEEEEEEECCCCeE--Ee-EEEEEEEECc
Confidence            99999998 99999876543542  33 4588887764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.27  E-value=4.3e-12  Score=103.79  Aligned_cols=85  Identities=21%  Similarity=0.312  Sum_probs=65.4

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT  104 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~lt  104 (129)
                      +.+. .|.+|.+|.|.|.+.+.|+   +.++|.+++..+... ...+|+.+.++|.|.|.+|+.+|+| .|+|+|.|.. 
T Consensus       392 ~~~~-~v~~G~~v~l~C~~~g~P~---p~i~W~~~~~~~~~~-~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a~N~~-  464 (477)
T 2id5_A          392 AQQV-FVDEGHTVQFVCRADGDPP---PAILWLSPRKHLVSA-KSNGRLTVFPDGTLEVRYAQVQDNG-TYLCIAANAG-  464 (477)
T ss_dssp             CEEE-EEETTCCEEECCCEEEESC---CEEEEECTTSCBC--------CEECTTSCEEESSCCSTTCE-EEEEEEEETT-
T ss_pred             cccE-EEeCCCeEEEEEeccccCC---CEEEEEECCcccccc-CCCceEEeCCCCEEEEeeCChHHCE-EEEEEEEeCC-
Confidence            4555 8999999999999987663   679999998655321 2467899999999999999999997 9999999997 


Q ss_pred             CeEEecccceEEEEe
Q psy5694         105 GESQASVFQTRLSIT  119 (129)
Q Consensus       105 ge~k~S~~~~~L~V~  119 (129)
                      |+.  +. .+.|.|+
T Consensus       465 g~~--~~-~~~l~V~  476 (477)
T 2id5_A          465 GND--SM-PAHLHVR  476 (477)
T ss_dssp             EEE--EE-EEEEEEE
T ss_pred             CcE--EE-EEEEEEe
Confidence            663  33 5577775

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.27  E-value=3.3e-12  Score=88.68  Aligned_cols=82  Identities=11%  Similarity=0.119  Sum_probs=61.2

Q ss_pred             eeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc------cCCCceEEEc------cCccEEEecc
Q psy5694          19 QKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN------TDTGGKYVVL------SSGDLYVFNA   86 (129)
Q Consensus        19 q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~------~~~~~ry~vl------psG~L~I~nv   86 (129)
                      ..|...+++. .+..|.++.|.|.+.+.|.   +.+.|++++..+...      .....++.+.      .++.|.|.++
T Consensus        22 P~~~~~p~~~-~v~~G~~v~L~C~~~g~P~---p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v   97 (137)
T 3qr2_A           22 AGFVQAPLSQ-QRWVGGSVELHCEAVGSPV---PEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTL   97 (137)
T ss_dssp             CEEEECCCCE-EEETTSCEEEEEEEECSSC---CEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECSC
T ss_pred             CeEEcCCCCE-EEeCCCCEEEEEEEeeecC---CeEEEEECCCCccccceeecccCcccceEEecccccccceEEEECCC
Confidence            3466667777 9999999999999987764   579999987544210      0002344443      5789999999


Q ss_pred             CCCCCCcceEEEeecccCC
Q psy5694          87 TPNDGYKSYRCRTVNKITG  105 (129)
Q Consensus        87 ~~~D~g~~Y~C~a~N~ltg  105 (129)
                      +.+|+| .|.|.|.|..+.
T Consensus        98 ~~~D~G-~Y~C~a~N~~G~  115 (137)
T 3qr2_A           98 VEEDTG-TYECRASNDPDR  115 (137)
T ss_dssp             CGGGCE-EEEEEEECCTTS
T ss_pred             CcccCE-EEEEEEEecCCc
Confidence            999997 999999999843

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.27  E-value=1.3e-11  Score=90.28  Aligned_cols=89  Identities=22%  Similarity=0.288  Sum_probs=68.4

Q ss_pred             EeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc---CccEEEeccCCCCCCcceEEEe
Q psy5694          23 INVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS---SGDLYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        23 ~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp---sG~L~I~nv~~~D~g~~Y~C~a   99 (129)
                      ..+.+. .+.+|+++.|.|.+.+.|.   +.+.|++|+..|...  ...++.+..   .+.|.|.+++.+|.| .|+|.|
T Consensus        23 ~~p~~~-~~~~G~~v~l~C~~~g~p~---p~i~W~~~g~~l~~~--~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a   95 (215)
T 3mtr_A           23 QGPVAV-YTWEGNQVNITCEVFAYPS---ATISWFRDGQLLPSS--NYSNIKIYNTPSASYLEVTPDSENDFG-NYNCTA   95 (215)
T ss_dssp             ECCSEE-EECTTCCEEEEEEEEEESC---CEEEEEETTEESSCS--SSCSEEEEEETTEEEEEECCCSGGGCE-EEEEEE
T ss_pred             cCCceE-EEECCCCEEEEEEEeecCC---CEEEEEECCeECCCC--CCccEEEecCCCeeEEEEecCChhhCe-EEEEEE
Confidence            345555 8999999999999987764   578999999877532  235676653   578999999999997 999999


Q ss_pred             ecccCCeEEecccceEEEEecCC
Q psy5694         100 VNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus       100 ~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      .|.. |..  +. ...|.|.+++
T Consensus        96 ~n~~-g~~--~~-~~~l~v~~~P  114 (215)
T 3mtr_A           96 VNRI-GQE--SL-EFILVQADTP  114 (215)
T ss_dssp             ECSS-CEE--EE-EEEEEECCCC
T ss_pred             EECC-Cce--EE-EEEEEECCCC
Confidence            9998 654  22 4577776543

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.27  E-value=1.6e-11  Score=93.09  Aligned_cols=80  Identities=15%  Similarity=0.211  Sum_probs=65.8

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccC-c---cEEEeccCCCCCCcceEEEeecccCC
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS-G---DLYVFNATPNDGYKSYRCRTVNKITG  105 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlps-G---~L~I~nv~~~D~g~~Y~C~a~N~ltg  105 (129)
                      .+..|+++.|.|.+.+.|.   +.+.|++++..|.    .+.+|.+..+ |   .|.|.+++.+|+| .|+|.|.|.. |
T Consensus       233 ~v~~g~~~~l~C~~~g~p~---p~i~W~~~g~~~~----~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a~N~~-g  303 (317)
T 2y25_A          233 TIQEGKALNLTCNVWGDPP---PEVSWLKNEKALA----SDDHCNLKFEAGRTAYFTINGVSTADSG-KYGLVVKNKY-G  303 (317)
T ss_dssp             EEETTSBBCEEEEEECSSC---CEEEEEESSSEEC----CCSSEEECCBTTTEEEEEEBSCCSTTCE-EEEEEEEETT-E
T ss_pred             EEEcCCEEEEEEEEecCCC---CEEEEEECCEeCC----CCCcEEEEEcCCCEEEEEECCCCHHHCE-EEEEEEEeCC-C
Confidence            8899999999999987774   5699999998774    3578888765 7   8999999999997 9999999998 6


Q ss_pred             eEEecccceEEEEecC
Q psy5694         106 ESQASVFQTRLSITGK  121 (129)
Q Consensus       106 e~k~S~~~~~L~V~ep  121 (129)
                      ..  +. ...|.|..|
T Consensus       304 ~~--~~-~~~l~V~~P  316 (317)
T 2y25_A          304 SE--TS-DFTVSVFIP  316 (317)
T ss_dssp             EE--EE-EEEEEEECC
T ss_pred             eE--EE-EEEEEEEcC
Confidence            64  33 457888755

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.27  E-value=9.1e-12  Score=88.41  Aligned_cols=85  Identities=18%  Similarity=0.317  Sum_probs=66.2

Q ss_pred             eEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc---cEEEeccCCCCCCcceEEE
Q psy5694          22 EINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVFNATPNDGYKSYRCR   98 (129)
Q Consensus        22 ~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG---~L~I~nv~~~D~g~~Y~C~   98 (129)
                      ...+... .+..|.++.|.|.+.+.|+   +.++|.+++..|.    .+.++.+..+|   .|.|.+++.+|.| .|+|.
T Consensus       107 ~~~~~~~-~~~~g~~~~l~C~~~g~p~---~~v~W~~~~~~~~----~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~  177 (194)
T 2a38_A          107 VQRLQSM-TVRQGSQVRLQVRVTGIPT---PVVKFYRDGAEIQ----SSLDFQISQEGDLYSLLIAEAYPEDSG-TYSVN  177 (194)
T ss_dssp             EECCCCE-EECTTEEEEEEEEEEEESC---CEEEEEETTEECC----CSSSEEEEEETTEEEEEEEEECGGGCE-EEEEE
T ss_pred             EeCCccE-EEcCCCEEEEEEEEEEecC---CeEEEEECCEECC----CCCcEEEEEcCCEEEEEECCCChhcCe-EEEEE
Confidence            3344455 7889999999999977664   4689999998774    34778887777   5999999999997 99999


Q ss_pred             eecccCCeEEecccceEEEEe
Q psy5694          99 TVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        99 a~N~ltge~k~S~~~~~L~V~  119 (129)
                      |.|.. |..  +. ...|.|+
T Consensus       178 a~n~~-g~~--~~-~~~l~V~  194 (194)
T 2a38_A          178 ATNSV-GRA--TS-TAELLVQ  194 (194)
T ss_dssp             EEETT-EEE--EE-EEEEEEC
T ss_pred             EEeCC-Cce--EE-EEEEEEC
Confidence            99998 653  22 4467663

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.27  E-value=2.4e-11  Score=88.72  Aligned_cols=89  Identities=21%  Similarity=0.257  Sum_probs=64.3

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeee---cccC-------C----CceEEEccCccEEEeccCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIY---LNTD-------T----GGKYVVLSSGDLYVFNATPND   90 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~---~~~~-------~----~~ry~vlpsG~L~I~nv~~~D   90 (129)
                      ++.. .+.+|++|.|.|.+++..+  .+.+.|.+++..|.   +...       .    .+|+.+..+|.|.|+|++.+|
T Consensus         5 p~~v-~~~~G~~v~L~C~~~~~~~--~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D   81 (193)
T 2if7_A            5 PLMV-NGILGESVTLPLEFPAGEK--VNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMED   81 (193)
T ss_dssp             CEEE-EEETTSCEEECCCCCCCSC--CCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGG
T ss_pred             CeEE-EEEecCeEEEeccCCCccc--ccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCccc
Confidence            4444 8999999999999975322  45799999874432   1100       0    147888889999999999999


Q ss_pred             CCcceEEEeecccCCeEEecccceEEEEecC
Q psy5694          91 GYKSYRCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        91 ~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      +| .|+|.+.|.. |...  . ...|.|.++
T Consensus        82 ~G-~Y~C~~~~~~-~~~~--~-~~~L~V~~~  107 (193)
T 2if7_A           82 TG-SYRAQISTKT-SAKL--S-SYTLRILRQ  107 (193)
T ss_dssp             CE-EEEEEEECSS-CEEE--E-EEEEEEECC
T ss_pred             Cc-eEEEEEEecC-CCeE--E-EEEEEEEcc
Confidence            97 9999999986 4322  2 457777654

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.26  E-value=1.1e-11  Score=88.70  Aligned_cols=80  Identities=11%  Similarity=0.083  Sum_probs=60.5

Q ss_pred             EeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEE--c--------cCccEEEeccCCCCCCcceEEEeec
Q psy5694          32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV--L--------SSGDLYVFNATPNDGYKSYRCRTVN  101 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~v--l--------psG~L~I~nv~~~D~g~~Y~C~a~N  101 (129)
                      ..|..+.|.|.+-+.|+   +.++|++|+..|..    +.|+.+  .        ..|.|.|.+++.+|+| .|+|+|.|
T Consensus        13 ~~~~~~~l~c~v~G~P~---P~I~W~knG~~l~~----~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G-~YtC~A~N   84 (126)
T 1he7_A           13 VEMHHWCIPFSVDGQPA---PSLRWLFNGSVLNE----TSFIFTEFLEPAANETVRHGCLRLNQPTHVNNG-NYTLLAAN   84 (126)
T ss_dssp             CCCCEEEEEEEECCSSC---CEEEEEETTEECCC----CSSEEEEEECCCSSCCCEEEEEEEESCCGGGCE-EEEEEEEE
T ss_pred             ccCccEEEEEEEeeeCC---CeEEEEECCEECCC----CCceeEEEeeccccccccceEEEECcCCCCCCE-EEEEEEEE
Confidence            35778899999999884   78999999988853    233321  1        2478999999999997 99999999


Q ss_pred             ccCCeEEecccceEEEEecCCC
Q psy5694         102 KITGESQASVFQTRLSITGKLK  123 (129)
Q Consensus       102 ~ltge~k~S~~~~~L~V~ep~~  123 (129)
                      .+ |+...   .+.|.|..+..
T Consensus        85 ~~-G~~~~---t~~l~v~~~P~  102 (126)
T 1he7_A           85 PF-GQASA---SIMAAFMDNPF  102 (126)
T ss_dssp             TT-EEEEE---EEEECCCSCTT
T ss_pred             CC-CeEEE---EEEEEEEcCCC
Confidence            99 76433   44676664443

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.26  E-value=1.2e-11  Score=93.00  Aligned_cols=84  Identities=25%  Similarity=0.376  Sum_probs=63.2

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc-CccEEEeccCCCCCCcceEEEeecccCCeEE
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS-SGDLYVFNATPNDGYKSYRCRTVNKITGESQ  108 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp-sG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k  108 (129)
                      .+..|+++.|.|.+.+.|+   +.++|.+++..|..    +.++.+.. ++.|.|.+++.+|+| .|+|.|.|.+ |+..
T Consensus       205 ~~~~g~~~~l~C~~~g~p~---p~v~W~~~g~~~~~----~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~N~~-G~~~  275 (291)
T 2wim_A          205 TAERGEEMTFSCRASGSPE---PAISWFRNGKLIEE----NEKYILKGSNTELTVRNIINSDGG-PYVCRATNKA-GEDE  275 (291)
T ss_dssp             CSSSCCEEEEECBCCCBSC---CEEEEEETTEECCC----TTTEEECSTTCEEEEESCCSTTCE-EEEEEEEETT-EEEE
T ss_pred             eecCCCeEEEEEEeecCCC---CeEEEEECCEECcC----CccEEEcCCccEEEEeeCCcccCE-EEEEEEEECC-Ccee
Confidence            5678999999999988764   56999999987743    46777654 678999999999997 9999999998 6643


Q ss_pred             ecccceEEEEecCCCCC
Q psy5694         109 ASVFQTRLSITGKLKSL  125 (129)
Q Consensus       109 ~S~~~~~L~V~ep~~~~  125 (129)
                      .   .+.|.|.++....
T Consensus       276 ~---~~~l~v~~~~~~~  289 (291)
T 2wim_A          276 K---QAFLQVFVQHHHH  289 (291)
T ss_dssp             E---EEEEEC-------
T ss_pred             e---eEEEEEEEecccc
Confidence            3   4588988876543

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.26  E-value=2.7e-11  Score=87.00  Aligned_cols=80  Identities=15%  Similarity=0.190  Sum_probs=63.3

Q ss_pred             EEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc-CccEEEeccCCCCCCcceEEEeecccCCeEEe
Q psy5694          31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS-SGDLYVFNATPNDGYKSYRCRTVNKITGESQA  109 (129)
Q Consensus        31 V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp-sG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~  109 (129)
                      +..|.++.|.|.+.+.+    +.++|++++..|.    .+.++.+.. ++.|.|.+++.+|.| .|+|.|.|.+ |+ ..
T Consensus       122 ~~~g~~v~l~C~~~~~p----p~i~W~~~g~~l~----~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a~N~~-g~-~~  190 (208)
T 3r4d_A          122 VKELDSVTLTCLSNDIG----ANIQWLFNSQSLQ----LTERMTLSQNNSILRIDPIKREDAG-EYQCEISNPV-SV-RR  190 (208)
T ss_dssp             CCTTCCEEEEEECSCTT----CEEEEEETTEECC----CCSSEEEETTTTEEEESSCCGGGCE-EEEEEEECTT-CC-EE
T ss_pred             EeeCCCEEEEEECCCCC----CceEEEECCEeCC----CCCCeEEcCCCCEEEEeccCHHhCe-EEEEEEecCC-Cc-cc
Confidence            67899999999998754    3689999998774    346887765 488999999999997 9999999998 66 34


Q ss_pred             cccceEEEEecCC
Q psy5694         110 SVFQTRLSITGKL  122 (129)
Q Consensus       110 S~~~~~L~V~ep~  122 (129)
                      |. +..|.|..|.
T Consensus       191 s~-~~~l~v~~~~  202 (208)
T 3r4d_A          191 SN-SIKLDIIFDP  202 (208)
T ss_dssp             CC-CEEECCC---
T ss_pred             CC-ceeeeEEeCC
Confidence            65 6777777654

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.25  E-value=1.1e-11  Score=87.82  Aligned_cols=87  Identities=20%  Similarity=0.374  Sum_probs=65.9

Q ss_pred             EeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCcc-EEEeccCCCCCCcceEEEeec
Q psy5694          23 INVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD-LYVFNATPNDGYKSYRCRTVN  101 (129)
Q Consensus        23 ~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~-L~I~nv~~~D~g~~Y~C~a~N  101 (129)
                      ..+++. .+..|+++.|.|.+.+.+.   +.+.|.+++..+..   .+.||.+..+|. |.|.+++.+|.| .|+|.+.|
T Consensus        12 ~~~~~~-~~~~G~~v~l~C~~~~~p~---~~i~W~~~~~~~~~---~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~   83 (192)
T 2iep_A           12 TPLETV-DALVEEVATFMCAVESYPQ---PEISWTRNKILIKL---FDTRYSIRENGQLLTILSVEDSDDG-IYCCTANN   83 (192)
T ss_dssp             SCCCEE-EEETTSCEEEECCEEEESC---CEEEEEETTEECCT---TCTTEEEEGGGTEEEESSCCGGGCE-EEEEEEEC
T ss_pred             cCccce-eeeCCCcEEEEeeCCCCCC---CeEEEEECCEEccc---cCccEEEcCCccEEEEcCCCcccCe-EEEEEEEc
Confidence            344555 8899999999999976653   47899999977743   367898887665 999999999997 99999999


Q ss_pred             ccCCeEEecccceEEEEec
Q psy5694         102 KITGESQASVFQTRLSITG  120 (129)
Q Consensus       102 ~ltge~k~S~~~~~L~V~e  120 (129)
                      ..+...  +. ...|.|..
T Consensus        84 ~~~~~~--~~-~~~l~v~~   99 (192)
T 2iep_A           84 GVGGAV--ES-CGALQVKM   99 (192)
T ss_dssp             SSSCCE--EE-EEEEEEEE
T ss_pred             CCCcee--Ee-EEEEEEEe
Confidence            874322  22 33555553

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.25  E-value=2.3e-11  Score=95.17  Aligned_cols=89  Identities=17%  Similarity=0.234  Sum_probs=69.1

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeec--ceeeecc-cCCCceEEEc---cCccEEEeccCCCCCCcceEEE
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD--DVNIYLN-TDTGGKYVVL---SSGDLYVFNATPNDGYKSYRCR   98 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d--~~~i~~~-~~~~~ry~vl---psG~L~I~nv~~~D~g~~Y~C~   98 (129)
                      +.+. .+.+|+.+.|.|.+.+.|.   +.++|.++  +..|... ...++|+.+.   .++.|.|.+++.+|+| .|+|.
T Consensus         7 ~~~~-~~~~G~~v~l~C~~~g~p~---p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~   81 (389)
T 2jll_A            7 LKNE-TTYENGQVTLVCDAEGEPI---PEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSG-RYDCE   81 (389)
T ss_dssp             CCCE-EEETTSEEEEEEEEECSSC---CEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCE-EEEEE
T ss_pred             cCce-EEeCCCeEEEEEEeecccC---CeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCE-EEEEE
Confidence            5566 8899999999999987763   57899999  7777432 1236788886   3578999999999997 99999


Q ss_pred             eecccCCeEEecccceEEEEecCC
Q psy5694          99 TVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        99 a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      |.|.. |+.  +. .+.|.|..++
T Consensus        82 a~n~~-g~~--~~-~~~l~V~~~P  101 (389)
T 2jll_A           82 AASRI-GGH--QK-SMYLDIEYAP  101 (389)
T ss_dssp             EECSS-CEE--EE-EEEEEEEEEE
T ss_pred             EEeCC-CCc--ce-EEEEEEEeCC
Confidence            99987 663  33 5688887543

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.25  E-value=2.2e-11  Score=86.03  Aligned_cols=90  Identities=16%  Similarity=0.166  Sum_probs=66.7

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc-----CccEEEeccCCCCCCcce
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS-----SGDLYVFNATPNDGYKSY   95 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp-----sG~L~I~nv~~~D~g~~Y   95 (129)
                      |...+++. .+.+|.++.|.|.+.+.+.   +.+.|++++..|..    ..++.+..     ++.|.|.+++.+|+| .|
T Consensus         5 ~~~~p~~~-~v~~G~~v~l~C~~~~~p~---~~v~W~k~~~~~~~----~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y   75 (182)
T 1rhf_A            5 LMGAPVKL-TVSQGQPVKLNCSVEGMEE---PDIQWVKDGAVVQN----LDQLYIPVSEQHWIGFLSLKSVERSDAG-RY   75 (182)
T ss_dssp             --CCCEEE-EEETTCCEEEEEEEESCSS---CCEEEEETTEECCS----SEEEEEEEETTEEEEEEEESSCCGGGCE-EE
T ss_pred             EEeCCcce-EEeCCCcEEEEEEEeCCCC---CeEEEEECCeecCC----CCceEEEecCCCceEEEEEeecCcccCe-EE
Confidence            45566777 8999999999999987553   46899999977743    24444433     368999999999997 99


Q ss_pred             EEEeecccCCeEEecccceEEEEecCC
Q psy5694          96 RCRTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        96 ~C~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      +|.+.|.. |. ..+. ...|.|..++
T Consensus        76 ~C~~~~~~-~~-~~~~-~~~l~V~~~p   99 (182)
T 1rhf_A           76 WCQVEDGG-ET-EISQ-PVWLTVEGVP   99 (182)
T ss_dssp             EEEESSCT-TC-EECC-CEEEEEECSC
T ss_pred             EEEEEcCC-Cc-EEEE-EEEEEEecCC
Confidence            99999985 43 2344 5688887553

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.25  E-value=1.8e-11  Score=88.61  Aligned_cols=88  Identities=19%  Similarity=0.282  Sum_probs=65.3

Q ss_pred             eeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCC
Q psy5694          26 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITG  105 (129)
Q Consensus        26 ~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltg  105 (129)
                      +.. .|.+|+++.|.|.+.+.+.   +.+.|++++..|..............++.|.|.+++.+|+| .|+|.+.|.. |
T Consensus        27 ~~~-~v~~G~~v~L~C~~~~~p~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~n~~-~  100 (231)
T 3ojm_B           27 RLH-AVPAANTVKFRCPAGGNPM---PTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG-NYTCVVENEY-G  100 (231)
T ss_dssp             SCE-EEETTSCEEEECCEEEESC---CEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCE-EEEEEEEETT-E
T ss_pred             eeE-EEccCCCEEEEEecccCCC---CeEEEEECCccccccccccceeeecCcceEEEecCCcccCE-EEEEEEeccc-C
Confidence            555 8999999999999987653   46999999987754322222234456778999999999997 9999999986 4


Q ss_pred             eEEecccceEEEEecCC
Q psy5694         106 ESQASVFQTRLSITGKL  122 (129)
Q Consensus       106 e~k~S~~~~~L~V~ep~  122 (129)
                      ..  +. ...|.|.++.
T Consensus       101 ~~--~~-~~~l~V~~~~  114 (231)
T 3ojm_B          101 SI--NH-TYHLDVVERS  114 (231)
T ss_dssp             EE--EE-EEEEEEECCC
T ss_pred             cc--cc-cEEEEEEcCC
Confidence            43  32 4577777543

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.25  E-value=2.3e-11  Score=93.41  Aligned_cols=79  Identities=14%  Similarity=0.170  Sum_probs=61.4

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEe
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQA  109 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~  109 (129)
                      .+..|+.+.|.|.+.+.|++  ..++|.+++..|..       .....++.|.|.+++.+|+| .|+|.|.|.+ |+.  
T Consensus       228 ~~~~g~~v~l~C~~~g~P~p--~~v~W~~~~~~l~~-------~~~~~~~~L~i~~v~~~d~G-~Y~C~a~N~~-G~~--  294 (313)
T 4fqp_A          228 WYLGQNEATLTCDARSNPEP--TGYNWSTTMGPLPP-------FAVAQGAQLLIRPVDKPINT-TLICNVTNAL-GAR--  294 (313)
T ss_dssp             EETTCCCEEEEEEEEEESCC--CEEEEEETTBSCCT-------TEEEETTEEEECCCSSCCEE-EEEEEEECSS-CEE--
T ss_pred             eecCCCeEEEEEEecCCCCC--cEEEEEECCEECCC-------ceEEeCCEEEECcCChhhCE-EEEEEEEeCC-CcE--
Confidence            56678999999999877653  24899999977632       12335788999999999997 9999999998 764  


Q ss_pred             cccceEEEEecCC
Q psy5694         110 SVFQTRLSITGKL  122 (129)
Q Consensus       110 S~~~~~L~V~ep~  122 (129)
                      +. ...|.|++++
T Consensus       295 ~~-~~~l~V~~~P  306 (313)
T 4fqp_A          295 QA-ELTVQVKEGP  306 (313)
T ss_dssp             EE-EEEEEEECCC
T ss_pred             EE-EEEEEEEeCC
Confidence            33 4589998654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.24  E-value=6.1e-12  Score=102.97  Aligned_cols=90  Identities=21%  Similarity=0.302  Sum_probs=66.0

Q ss_pred             EeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-eeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeec
Q psy5694          23 INVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVN  101 (129)
Q Consensus        23 ~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N  101 (129)
                      ..+.+. .|.+|.+++|.|.+.  |   .+.++|.+++ ..+.. ...++|+.+..+|.|.|.+|+.+|+| .|+|+|.|
T Consensus       357 ~~~~~~-~v~~G~~~~l~C~~~--p---~p~i~W~~~~~~~~~~-~~~~~~~~~~~~g~L~i~~v~~~D~G-~Y~C~a~N  428 (452)
T 3zyi_A          357 DAPRDL-NISEGRMAELKCRTP--P---MSSVKWLLPNGTVLSH-ASRHPRISVLNDGTLNFSHVLLSDTG-VYTCMVTN  428 (452)
T ss_dssp             BCCCCE-ECCTTSCCEECCBCC--T---TSEEEEECTTSCEECS-SCCCSSCEECTTSCEECSSCCTTCCE-EEEEEEEC
T ss_pred             cccccc-cccCCCEEEEEEeCC--C---CCcEEEEeCCCcEecc-CCCCCCEEECCCCeEEEeecCHHHCE-EEEEEEEc
Confidence            345555 889999999999987  4   3578999966 44432 23456899999999999999999997 99999999


Q ss_pred             ccCCeEEecccceEEEEecCCCC
Q psy5694         102 KITGESQASVFQTRLSITGKLKS  124 (129)
Q Consensus       102 ~ltge~k~S~~~~~L~V~ep~~~  124 (129)
                      .. |+...   .+.|.|.+....
T Consensus       429 ~~-G~~~~---~~~l~v~~~~~~  447 (452)
T 3zyi_A          429 VA-GNSNA---SAYLNVSTAGTH  447 (452)
T ss_dssp             SS-CEEEE---EEEEEC------
T ss_pred             CC-CcEEE---EEEEEEEccccc
Confidence            98 66433   447888765443

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.24  E-value=2.4e-11  Score=92.11  Aligned_cols=90  Identities=22%  Similarity=0.366  Sum_probs=69.6

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEc--cCc--cEEEeccCCCCCCcce
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL--SSG--DLYVFNATPNDGYKSY   95 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl--psG--~L~I~nv~~~D~g~~Y   95 (129)
                      .|...+++. .+.+|+++.|.|.+.+.+.   +.+.|++++..|..   .+.+|.+.  .+|  .|.|.+++.+|+| .|
T Consensus         6 ~~~~~p~~~-~v~~G~~v~l~C~~~g~p~---~~v~W~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y   77 (305)
T 2nzi_A            6 HFKEELRNL-NVRYQSNATLVCKVTGHPK---PIVKWYRQGKEIIA---DGLKYRIQEFKGGYHQLIIASVTDDDAT-VY   77 (305)
T ss_dssp             EEEECCCCE-EECTTCCEEEEEEEECSSC---CEEEEEETTEECCC---CSSSEEEEEETTTEEEEEESSCCGGGCS-EE
T ss_pred             eeeecccce-EEeCCCcEEEEEEEeCCCC---CeEEEEECCEEccc---CCCeEEEEECCCCEEEEEEccCChhhCe-EE
Confidence            355566776 8999999999999977663   67999999977753   34567664  345  8999999999998 99


Q ss_pred             EEEeecccCCeEEecccceEEEEecC
Q psy5694          96 RCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        96 ~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      +|.|.|.. |..  +. .+.|.|..+
T Consensus        78 ~C~a~n~~-g~~--~~-~~~l~V~~~   99 (305)
T 2nzi_A           78 QVRATNQG-GSV--SG-TASLEVEVP   99 (305)
T ss_dssp             EEEEEETT-EEE--EE-EEEEEECEE
T ss_pred             EEEEEcCC-CCc--cc-eEEEEEecC
Confidence            99999986 553  33 557888754

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.24  E-value=3.7e-11  Score=95.47  Aligned_cols=92  Identities=22%  Similarity=0.391  Sum_probs=67.4

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEe
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a   99 (129)
                      .|.......+.+.+|+.++|.|.++...+  .+.++|++++..+..   ...++....+|.|+|.+|+.+|+| .|+|.|
T Consensus       103 ~~~~~~~~~~~v~~G~~~~l~C~~~~~~~--~~~~~W~~~~~~~~~---~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a  176 (384)
T 3kld_A          103 NFKTRTRSTVSVRRGQGMVLLCGPPPHSG--ELSYAWIFNEYPSYQ---DNRRFVSQETGNLYIAKVEKSDVG-NYTCVV  176 (384)
T ss_dssp             CCSCCCCCCEEEEETCCEEECCCCCSEES--CEEEEEEETTEECCC---SSSEEECTTTCCEEESSCCGGGCE-EEEEEE
T ss_pred             ccccCCCCceeEEcCCCeEEecCCCCCCC--CeEEEEEECCCCCEe---eccEEEEcCCCcEEEeecCHHHCc-eEEEEE
Confidence            34444444448999999999998765433  267899999976642   345676678999999999999997 999999


Q ss_pred             ecccCCeEEecccceEEEE
Q psy5694         100 VNKITGESQASVFQTRLSI  118 (129)
Q Consensus       100 ~N~ltge~k~S~~~~~L~V  118 (129)
                      .|..+.....+. ...|.+
T Consensus       177 ~n~~~~~~~~~~-~~~~~v  194 (384)
T 3kld_A          177 TNTVTNHKVLGP-PTPLIL  194 (384)
T ss_dssp             EETTTTEEEECC-CEEEEE
T ss_pred             ecccccceeeCC-ceEEEE
Confidence            999865543333 444444

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.24  E-value=5.4e-11  Score=84.70  Aligned_cols=85  Identities=18%  Similarity=0.153  Sum_probs=65.4

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEee
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      ........ .+..|.++.|.|.+.+.++.  +.+.|++|+..|..         ...++.|.|.+++.+|+| .|+|.|.
T Consensus        91 ~~~~~~~~-~~~~g~~~~l~C~~~~~~~~--~~~~W~k~g~~~~~---------~~~~~~L~i~~v~~~d~G-~Y~C~a~  157 (175)
T 1fnl_A           91 LLLQAPRW-VFKEEDPIHLRCHSWKNTAL--HKVTYLQNGKDRKY---------FHHNSDFHIPKATLKDSG-SYFCRGL  157 (175)
T ss_dssp             EEEECSCS-EEETTCCEEEEEEECTTCCC--EEEEEEETTEEEEE---------EEECCCEEESSCCGGGCE-EEEEEEE
T ss_pred             ceeeCCCc-eecCCCCEEEEEEcCCCCCc--eEEEEEECCeEccC---------CCCCCEEEEcccChhhCe-EEEEEEE
Confidence            34444555 78899999999999876543  57999999977632         124689999999999997 9999999


Q ss_pred             cccCCeEEecccceEEEEecC
Q psy5694         101 NKITGESQASVFQTRLSITGK  121 (129)
Q Consensus       101 N~ltge~k~S~~~~~L~V~ep  121 (129)
                      |.. |. ..|. ...|.|.+|
T Consensus       158 n~~-~~-~~s~-~~~l~V~~~  175 (175)
T 1fnl_A          158 VGS-KN-VSSE-TVNITITQA  175 (175)
T ss_dssp             ETT-EE-EECC-CEEEEEECC
T ss_pred             cCC-CC-ccCc-cEEEEEeCC
Confidence            975 33 3455 778998875

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.24  E-value=2.8e-11  Score=87.62  Aligned_cols=81  Identities=14%  Similarity=0.056  Sum_probs=55.2

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc----CccEEEeccCCCCCCcceEEEeecccCC
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS----SGDLYVFNATPNDGYKSYRCRTVNKITG  105 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp----sG~L~I~nv~~~D~g~~Y~C~a~N~ltg  105 (129)
                      .|.+|+++.|.|.+.+.+    +.++|.+|+..+.+.   +.++.+..    .+.|.|.+|+.+|+| .|+|.|.|....
T Consensus       111 ~v~~G~~v~L~C~~~~~~----~~v~W~k~g~~~~~~---~~~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~a~n~~~~  182 (198)
T 1ugn_A          111 VVNSGGNVTLQCDSQVAF----DGFILCKEGEDEHPQ---CLNSQPHARGSSRAIFSVGPVSPSRRW-WYRCYAYDSNSP  182 (198)
T ss_dssp             EEETTCCEEEEEECSSCC----SEEEEEEC------C---EEEC------CCEEEEEECCCCTTSCE-EEEEEEECTTST
T ss_pred             ccCCCCcEEEEEecCCCC----cEEEEEECCCccCCc---cccccccCCCcceeEEEecccCcccCe-EEEEEEEeCCCC
Confidence            789999999999998763    478999999666331   23443443    378999999999997 999999998643


Q ss_pred             eE--EecccceEEEEe
Q psy5694         106 ES--QASVFQTRLSIT  119 (129)
Q Consensus       106 e~--k~S~~~~~L~V~  119 (129)
                      ..  ..|+ +..|.|+
T Consensus       183 ~~~s~~S~-~~~l~V~  197 (198)
T 1ugn_A          183 YEWSLPSD-LLELLVL  197 (198)
T ss_dssp             TEECCCCC-CEEEEEE
T ss_pred             ccccCcCc-eEEEEec
Confidence            21  2244 6677775

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.24  E-value=1.9e-11  Score=91.80  Aligned_cols=91  Identities=19%  Similarity=0.313  Sum_probs=70.8

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEee
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      +...+... .+.+|+++.|.|.+.+.++   +.+.|++++..+..  ..+.++.+..+|.|.|.+++.+|+| .|+|.|.
T Consensus       103 ~~~~~~~~-~~~~g~~v~l~C~~~~~p~---~~v~W~~~~~~~~~--~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~  175 (291)
T 1qz1_A          103 FKNAPTPQ-EFKEGEDAVIVCDVVSSLP---PTIIWKHKGRDVIL--KKDVRFIVLSNNYLQIRGIKKTDEG-TYRCEGR  175 (291)
T ss_dssp             EEECCSSE-EEETTSCEEECCEEECSSC---CEEEEEETTSCSST--TCCTTEEECTTSCEEETTCCGGGCE-EEEEEEE
T ss_pred             ccCCCCcc-cccCCCeEEEEEEeccCCC---CEEEEEECCEEccc--CCCceEEEccCCcEEEccCccccCe-EEEEEEE
Confidence            44455566 7899999999999987764   46999999966643  2467899999999999999999997 9999999


Q ss_pred             cccCCeEEecccceEEEEec
Q psy5694         101 NKITGESQASVFQTRLSITG  120 (129)
Q Consensus       101 N~ltge~k~S~~~~~L~V~e  120 (129)
                      |...|+.. +. ...|.|..
T Consensus       176 n~~~~~~~-~~-~~~l~v~~  193 (291)
T 1qz1_A          176 ILARGEIN-FK-DIQVIVNV  193 (291)
T ss_dssp             EGGGTEEE-EE-EEEEEEEE
T ss_pred             ecCCCcee-eE-EEEEEEec
Confidence            98766632 22 34555543

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.23  E-value=4e-11  Score=90.08  Aligned_cols=92  Identities=17%  Similarity=0.308  Sum_probs=69.7

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEee-cceeeecccCCCceEEEc----cCccEEEeccCCCCCCcc
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQ-DDVNIYLNTDTGGKYVVL----SSGDLYVFNATPNDGYKS   94 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~-d~~~i~~~~~~~~ry~vl----psG~L~I~nv~~~D~g~~   94 (129)
                      .+...+++. .|.+|+++.|.|.+.+.++  .+.+.|++ |+..|.+   ...|+.+.    .++.|.|.+++.+|+| .
T Consensus         4 ~v~~~p~~~-~v~~G~~v~l~C~~~~~~~--~~~i~W~~~~g~~~~~---~~~~~~~~~~~~~~~~L~i~~~~~~D~G-~   76 (291)
T 1qz1_A            4 QVDIVPSQG-EISVGESKFFLCQVAGDAK--DKDISWFSPNGEKLSP---NQQRISVVWNDDDSSTLTIYNANIDDAG-I   76 (291)
T ss_dssp             CEEEESSSE-EEETTCCEEEEEEESSCCS--CCEEEEECTTSCBCCS---SCSSEEEEEEETTEEEEEECSCCGGGCE-E
T ss_pred             ceEecCCCc-eEeCCCeEEEEEEeCCCCC--CcEeEEECCCCeECcc---CCceEEEEEcCCCeEEEEEecCCCCCCE-E
Confidence            356677777 8999999999999987664  36799999 6666643   35677665    3578999999999997 9


Q ss_pred             eEEEeecccCCeEEecccceEEEEecC
Q psy5694          95 YRCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        95 Y~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      |+|.+.|..++.  .+. ...|.|.++
T Consensus        77 Y~C~~~n~~g~~--~~~-~~~l~v~~~  100 (291)
T 1qz1_A           77 YKCVVTAEDGTQ--SEA-TVNVKIFQK  100 (291)
T ss_dssp             EEEEEECTTSCE--EEE-EEEEEEECC
T ss_pred             EEEEEEcCCCCe--eEE-EEEEEeecc
Confidence            999999987443  233 446666544

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.23  E-value=2.1e-11  Score=86.95  Aligned_cols=79  Identities=19%  Similarity=0.274  Sum_probs=63.3

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEc---cCccEEEec-cCCCCCCcceEEEeecccCC
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL---SSGDLYVFN-ATPNDGYKSYRCRTVNKITG  105 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl---psG~L~I~n-v~~~D~g~~Y~C~a~N~ltg  105 (129)
                      .+..|+++.|.|.+.+.|+   +.++|.+++..|.    .+++|.+.   .++.|.|.+ ++.+|.| .|+|.|.|.+ |
T Consensus       115 ~~~~g~~~~l~C~~~g~p~---p~i~W~~~~~~~~----~~~~~~~~~~~~~~~L~i~~~~~~~d~G-~Y~C~a~N~~-g  185 (197)
T 2j8h_A          115 HALRGEVVSIKIPFSGKPD---PVITWQKGQDLID----NNGHYQVIVTRSFTSLVFPNGVERKDAG-FYVVCAKNRF-G  185 (197)
T ss_dssp             EEETTCCCEEEEEEEEESC---CEEEEEESSCEEC----SSSSCEEEECSSEEEEECTTCCCGGGCE-EEEEEEEETT-E
T ss_pred             EEeCCCEEEEEEEEEecCC---CcEEEEECCEEee----cCCCEEEEEcCCceEEEEeCCCCcccCE-eEEEEEEeCC-C
Confidence            7888999999999987664   5799999997774    34677765   346899999 9999997 9999999998 6


Q ss_pred             eEEecccceEEEEec
Q psy5694         106 ESQASVFQTRLSITG  120 (129)
Q Consensus       106 e~k~S~~~~~L~V~e  120 (129)
                      ..  +. ...|.|.+
T Consensus       186 ~~--~~-~~~l~V~d  197 (197)
T 2j8h_A          186 ID--QK-TVELDVAD  197 (197)
T ss_dssp             EE--EE-EEEEEEEC
T ss_pred             cE--eE-EEEEEEeC
Confidence            63  33 45777754

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.23  E-value=2.5e-11  Score=91.07  Aligned_cols=91  Identities=22%  Similarity=0.476  Sum_probs=70.4

Q ss_pred             eeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEc---cCccEEEeccCCCCCCcce
Q psy5694          19 QKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL---SSGDLYVFNATPNDGYKSY   95 (129)
Q Consensus        19 q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl---psG~L~I~nv~~~D~g~~Y   95 (129)
                      ..|...+.+. .+.+|.++.|.|.+.+.++   +.++|.+++..|.+    +++|.+.   .++.|.|.+++.+|+| .|
T Consensus         6 P~~~~~p~~~-~~~~G~~v~l~C~~~g~p~---~~v~W~~~~~~~~~----~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y   76 (284)
T 2rik_A            6 PFFDLKPVSV-DLALGESGTFKCHVTGTAP---IKITWAKDNREIRP----GGNYKMTLVENTATLTVLKVTKGDAG-QY   76 (284)
T ss_dssp             CEEEECCCCE-EEETTCCEEEEEEEESSSC---CEEEEEETTEECCS----SSSEEEEEETTEEEEEESSCCGGGCE-EE
T ss_pred             CEEEccccce-EecCCCcEEEEEEEEcCCC---CEEEEEECCEECcC----CCcEEEEEcCCEEEEEEecCCcccCE-EE
Confidence            3466677777 8999999999999987653   57899999987743    3555543   3578999999999997 99


Q ss_pred             EEEeecccCCeEEecccceEEEEecCC
Q psy5694          96 RCRTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        96 ~C~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      +|.+.|.. |..  +. .+.|.|.+++
T Consensus        77 ~C~~~n~~-g~~--~~-~~~l~V~~~p   99 (284)
T 2rik_A           77 TCYASNVA-GKD--SC-SAQLGVQEPP   99 (284)
T ss_dssp             EEEEEETT-EEE--EE-EEEEEEECCC
T ss_pred             EEEEEECC-ceE--EE-EEEEEccCCC
Confidence            99999986 542  33 5688887654

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.23  E-value=1.6e-11  Score=89.31  Aligned_cols=91  Identities=19%  Similarity=0.288  Sum_probs=65.8

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeeccee-----eec----ccCCCceEE----------EccCccEEEec
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVN-----IYL----NTDTGGKYV----------VLSSGDLYVFN   85 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~-----i~~----~~~~~~ry~----------vlpsG~L~I~n   85 (129)
                      +++. .|.+|+++.|.|.+.+.+.  .+.+.|.+++..     |..    .....+|+.          +..+|.|.|.+
T Consensus         7 p~~~-~v~~G~~v~L~C~~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~   83 (231)
T 2pet_A            7 PPLV-EVMRGKSVILDCTPTGTHD--HYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAE   83 (231)
T ss_dssp             CSEE-EEETTCCEEECCCCBSCCS--EEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESS
T ss_pred             CCcE-EEEcCCCEEEecccCCCCC--ceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcc
Confidence            3444 8999999999999987664  478999986522     211    000134555          88889999999


Q ss_pred             cCCCCCCcceEEEeecccCCeEEecccceEEEEecCC
Q psy5694          86 ATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        86 v~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      ++.+|+| .|+|.+.|...|..  +. ...|.|..+.
T Consensus        84 v~~~D~G-~Y~C~~~~~~~~~~--~~-~~~l~V~~~p  116 (231)
T 2pet_A           84 AQVGDER-DYVCVVRAGAAGTA--EA-TARLNVFAKP  116 (231)
T ss_dssp             CCGGGCE-EEEEEEECGGGCEE--EE-EEEEEEEBCC
T ss_pred             cCcccCc-eEEEEEEecCCCce--EE-EEEEEEEecC
Confidence            9999997 99999999874543  33 5578887653

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=99.23  E-value=3.5e-11  Score=83.65  Aligned_cols=93  Identities=17%  Similarity=0.270  Sum_probs=64.8

Q ss_pred             eEEEeCCeEEEEeeCCCCCCCceeEeEEeecce--ee--ecc---------cCCCceEEEcc------CccEEEeccCCC
Q psy5694          29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDV--NI--YLN---------TDTGGKYVVLS------SGDLYVFNATPN   89 (129)
Q Consensus        29 ~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~--~i--~~~---------~~~~~ry~vlp------sG~L~I~nv~~~   89 (129)
                      +.+..|++|+|.|.+...+......+.|.+++.  .+  +..         ..-.+|+.+..      ++.|.|.||+.+
T Consensus        16 v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~   95 (139)
T 1pko_A           16 IRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFS   95 (139)
T ss_dssp             EEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCGG
T ss_pred             EEEEeCCCEEEeeEccCCCCCCceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEccccccCCeEEEEEccCCHH
Confidence            489999999999998644322235789999762  22  110         01246887764      357999999999


Q ss_pred             CCCcceEEEeecccCCeEEecccceEEEEecCCCCCC
Q psy5694          90 DGYKSYRCRTVNKITGESQASVFQTRLSITGKLKSLC  126 (129)
Q Consensus        90 D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~~~~~  126 (129)
                      |+| .|.|.+.|.. |.  .+. ...|.|.+|...+.
T Consensus        96 D~G-~Y~C~v~~~~-~~--~~~-~~~L~V~~P~~~~~  127 (139)
T 1pko_A           96 DEG-GYTCFFRDHS-YQ--EEA-AVELKVEDPFYWIN  127 (139)
T ss_dssp             GCE-EEEEEEEETT-EE--EEE-EEEEEEECTTTTSS
T ss_pred             HCE-EEEEEEEcCC-Cc--eEE-EEEEEEecCcCccC
Confidence            997 9999999975 43  343 56899998766554

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.23  E-value=1.9e-11  Score=88.37  Aligned_cols=79  Identities=15%  Similarity=0.151  Sum_probs=59.6

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEe
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQA  109 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~  109 (129)
                      .|.+|+++.|.|.+.+.+    +.+.|.+|+..+..     .+.....++.|.|.+|+.+|+| .|+|.|.|....-...
T Consensus       109 ~v~~G~~v~L~C~~~~~~----~~~~w~k~g~~~~~-----~~~~~~~~~~L~I~~v~~~d~G-~Y~C~a~n~~~~~s~~  178 (188)
T 1oll_A          109 EVISGEKVTFYCRLDTAT----SMFLLLKEGRSSHV-----QRGYGKVQAEFPLGPVTTAHRG-TYRCFGSYNNHAWSFP  178 (188)
T ss_dssp             EEETTCEEEEEEECSSSC----SEEEEEEESSSCEE-----EEEECSSEEEEEEEECCGGGCE-EEEEECEEETTEECCC
T ss_pred             ccccCCEEEEEEEcCCCC----CEEEEEECCccccc-----cccCCCceeEEEECCCCcCCCc-EEEEEEEcCCCcCCCC
Confidence            688999999999986533    36899999865532     2223346789999999999997 9999999875222345


Q ss_pred             cccceEEEEe
Q psy5694         110 SVFQTRLSIT  119 (129)
Q Consensus       110 S~~~~~L~V~  119 (129)
                      |+ +..|.|+
T Consensus       179 S~-~~~l~V~  187 (188)
T 1oll_A          179 SE-PVKLLVT  187 (188)
T ss_dssp             CC-CEEEEEE
T ss_pred             CC-cEEEEec
Confidence            66 7788886

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.23  E-value=2.3e-11  Score=86.33  Aligned_cols=93  Identities=18%  Similarity=0.293  Sum_probs=65.8

Q ss_pred             eeeEee-eeeeEEEeCCeEEEEee-CCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEE
Q psy5694          20 KYEINV-NYEHNVILGNTAVLRCQ-IPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        20 ~y~~~v-~~~~~V~~GntAvL~C~-vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C   97 (129)
                      +|.... ++. .+.+|+++.|.|. +.+.+.  .+.+.|++++..+... ....++....+|.|.|.+++.+|+| .|+|
T Consensus         9 ~~~~~~~~~~-~v~~G~~v~L~C~~~~~~p~--~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C   83 (201)
T 3s97_C            9 PFPPEERPEV-RVKEGKGMVLLCDPPYHFPD--DLSYRWLLNEFPVFIT-MDKRRFVSQTNGNLYIANVEASDKG-NYSC   83 (201)
T ss_dssp             CCCSSCCCCE-EEETTCCEEECCCCCSEESS--CCEEEEEESSTTCBCC-CSSSEEECTTTCCEEESSCCGGGCE-EEEE
T ss_pred             ccCcCCCceE-EEECCCCEEEeccccccCCC--ceEEEEEECCceeeee-eCCCeEEEcCCCeEEECcCCcccCe-EEEE
Confidence            344444 444 8999999999999 555553  2578999998655321 2344555668999999999999997 9999


Q ss_pred             EeecccCCeEEecccceEEEE
Q psy5694          98 RTVNKITGESQASVFQTRLSI  118 (129)
Q Consensus        98 ~a~N~ltge~k~S~~~~~L~V  118 (129)
                      .+.|..++....+. ...|.+
T Consensus        84 ~~~~~~~~~~~~~~-~~~~~~  103 (201)
T 3s97_C           84 FVSSPSITKSVFSK-FIPLIP  103 (201)
T ss_dssp             EEEEGGGTEEEECC-CEEEEE
T ss_pred             EEEecCCCcchhhc-ccceee
Confidence            99998755544343 334433

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.23  E-value=1.1e-11  Score=88.63  Aligned_cols=80  Identities=19%  Similarity=0.299  Sum_probs=60.7

Q ss_pred             EEEeCCeEEEEeeC-CCCCCCceeEeEEeecc--eeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCe
Q psy5694          30 NVILGNTAVLRCQI-PSYMSEYIIVTSWIQDD--VNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGE  106 (129)
Q Consensus        30 ~V~~GntAvL~C~v-p~~~~~~v~v~sW~~d~--~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge  106 (129)
                      .+..|+++.|.|.+ .+.|+   +.++|.+++  ..+.     ..++....+|.|.|.+++.+|+| .|+|.|.|.+ |+
T Consensus       132 ~~~~g~~v~l~C~~~~g~p~---~~v~W~~~~~~~~~~-----~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~N~~-g~  201 (214)
T 3jz7_A          132 SEEIGNDFKLKCEPKEGSLP---LQFEWQKLSDSQTMP-----TPWLAEMTSPVISVKNASSEYSG-TYSCTVQNRV-GS  201 (214)
T ss_dssp             CCBTTCCEEEEEECSBCCSS---CEEEEEECSTTCCCC-----GGGGGGTTSSEEEECSCCGGGCE-EEEEEEECSS-CE
T ss_pred             ceecCCcEEEEecCCCCCCC---CEEEEEECCCCCccC-----ccceeccCCCEEEEecCCHHHCE-EEEEEEEcCC-Cc
Confidence            57789999999999 45553   679999964  3332     23344456889999999999997 9999999998 66


Q ss_pred             EEecccceEEEEecCC
Q psy5694         107 SQASVFQTRLSITGKL  122 (129)
Q Consensus       107 ~k~S~~~~~L~V~ep~  122 (129)
                      .  +. .+.|.|.+|+
T Consensus       202 ~--~~-~~~l~V~~P~  214 (214)
T 3jz7_A          202 D--QC-MLRLDVVPPS  214 (214)
T ss_dssp             E--EE-EEEECCBCCC
T ss_pred             E--EE-EEEEEEeCCC
Confidence            4  33 4588888663

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.23  E-value=7.7e-11  Score=85.69  Aligned_cols=91  Identities=21%  Similarity=0.324  Sum_probs=70.0

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEc--cCc--cEEEeccCC-CCCCcc
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL--SSG--DLYVFNATP-NDGYKS   94 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl--psG--~L~I~nv~~-~D~g~~   94 (129)
                      .|...+.+. .|.+|+++.|.|.+.+.+.   +.+.|++++..|..   .++||.+.  .+|  .|.|.+++. +|+| .
T Consensus         8 ~~~~~p~~~-~v~~G~~v~l~C~~~g~p~---~~v~W~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~v~~~~d~G-~   79 (212)
T 2yd1_A            8 EIIRKPQNQ-GVRVGGVASFYCAARGDPP---PSIVWRKNGKKVSG---TQSRYTVLEQPGGISILRIEPVRAGRDDA-P   79 (212)
T ss_dssp             EEEECCCCE-EEETTSCEEEEEEEECSSC---CEEEEEETTEECCT---TSTTEEEEEETTTEEEEEESSCCTTTTCS-E
T ss_pred             EEEcCCCce-EEecCCEEEEEEEEccCCC---CeEEEEECCEECCC---CcceeEEEEcCCCeEEEEEEecCCCCcCc-e
Confidence            455667777 8999999999999987664   57999999977742   35777765  344  799999999 9997 9


Q ss_pred             eEEEeecccCCeEEecccceEEEEecC
Q psy5694          95 YRCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        95 Y~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      |+|.+.|.. |.. .+. ...|.|..+
T Consensus        80 Y~C~~~n~~-g~~-~~~-~~~l~V~~~  103 (212)
T 2yd1_A           80 YECVAENGV-GDA-VSA-DATLTIYEG  103 (212)
T ss_dssp             EEEEEECSS-SCE-EEE-EEEEEEECT
T ss_pred             EEEEEEeCC-CCe-EEe-eEEEEEecc
Confidence            999999987 441 233 457777754

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.23  E-value=3.4e-11  Score=85.48  Aligned_cols=82  Identities=22%  Similarity=0.278  Sum_probs=58.5

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc--------------cCCCceEEEc------cCccEEE
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN--------------TDTGGKYVVL------SSGDLYV   83 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~--------------~~~~~ry~vl------psG~L~I   83 (129)
                      +..+.+.|.+|++|.|.|.+.+.+.+....++|++++..+...              ....+|+...      .++.|.|
T Consensus         4 ~~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I   83 (218)
T 4frw_A            4 ETSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLL   83 (218)
T ss_dssp             ECCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEE
T ss_pred             eCCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEE
Confidence            3344458999999999999988777666779999986332110              0112344432      2467999


Q ss_pred             eccCCCCCCcceEEEeecccCCe
Q psy5694          84 FNATPNDGYKSYRCRTVNKITGE  106 (129)
Q Consensus        84 ~nv~~~D~g~~Y~C~a~N~ltge  106 (129)
                      .|++.+|+| .|.|.+.|...+.
T Consensus        84 ~~v~~~D~G-~Y~C~~~~~~~~~  105 (218)
T 4frw_A           84 RNAVQADEG-EYECRVSTFPAGS  105 (218)
T ss_dssp             SSCCGGGCE-EEEEEEEEETTEE
T ss_pred             eeccHHHCC-ceeEEEEeccCce
Confidence            999999997 9999999876443

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.22  E-value=3.8e-11  Score=86.52  Aligned_cols=85  Identities=13%  Similarity=0.103  Sum_probs=63.0

Q ss_pred             eEEEeCCeEEEEeeCCCCCC--CceeEeEEeecc-eeeecccCCCceEEEccC------ccEEEeccCCCCCCcceEEEe
Q psy5694          29 HNVILGNTAVLRCQIPSYMS--EYIIVTSWIQDD-VNIYLNTDTGGKYVVLSS------GDLYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        29 ~~V~~GntAvL~C~vp~~~~--~~v~v~sW~~d~-~~i~~~~~~~~ry~vlps------G~L~I~nv~~~D~g~~Y~C~a   99 (129)
                      +.|.+|+++.|.|.+.+.+.  ...+.+.|.+++ ..+    ...+|+.+..+      +.|.|.|++.+|+| .|+|.+
T Consensus        12 v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~----~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~~   86 (202)
T 3bp6_B           12 YTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTS----LQSERATLLEEQLPLGKALFHIPSVQVRDSG-QYRCLV   86 (202)
T ss_dssp             EEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CC----CBCSSCEECGGGGGGTEEEEEECSCCGGGCE-EEEEEE
T ss_pred             EEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCccc----ccCCceEEeeccccCCeeEEEECCCCHHHCc-EEEEEE
Confidence            38899999999999987763  222679999944 433    23578877654      78999999999997 999999


Q ss_pred             ecccCCeEEecccceEEEEecCC
Q psy5694         100 VNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus       100 ~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      .|.. |..  +. ...|.|..+.
T Consensus        87 ~~~~-~~~--~~-~~~l~V~~~~  105 (202)
T 3bp6_B           87 ICGA-AWD--YK-YLTVKVKASY  105 (202)
T ss_dssp             EETT-EEE--EE-EEEEEEEBCC
T ss_pred             EeCC-Ccc--eE-EEEEEecCCC
Confidence            9976 432  33 5578887653

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=99.22  E-value=1.4e-11  Score=82.55  Aligned_cols=61  Identities=21%  Similarity=0.351  Sum_probs=50.8

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEecc-CCCCCCcceEEEeec
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNA-TPNDGYKSYRCRTVN  101 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv-~~~D~g~~Y~C~a~N  101 (129)
                      +++.. .++.|++++|.|.+.+.|+     ++|.||+..|..     +     .+|.|.|.|| +.+|+| .|+|+|.+
T Consensus         5 ~p~~~-v~~~G~~v~L~C~~~g~P~-----i~W~kdg~~l~~-----~-----~~~~L~I~~v~~~~DsG-~Y~C~A~t   66 (82)
T 3r08_E            5 NIEYK-VSISGTSVELTCPLDSDEN-----LKWEKNGQELPQ-----K-----HDKHLVLQDFSEVEDSG-YYVCYTPA   66 (82)
T ss_dssp             CCCCE-EEEETTEEEEECSSCCCSS-----CEEEETTEECTT-----C-----CSSCCBCCSCCTTTTCS-CEEEECSS
T ss_pred             CCcee-EEEcCCeEEEEEECCCCCc-----EEEEECCEECcC-----C-----CCCEEEECccCccCcCE-EEEEEEcc
Confidence            45666 7889999999999988762     899999987732     1     5789999996 789998 99999976

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.22  E-value=5.2e-11  Score=87.34  Aligned_cols=84  Identities=21%  Similarity=0.315  Sum_probs=64.3

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEe
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQA  109 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~  109 (129)
                      .|.+|+++.|.|.+.+.+.   +.+.|++++..|..............++.|.|.+++.+|+| .|+|.+.|.. |..  
T Consensus        26 ~v~~G~~v~L~C~~~~~p~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~~~~~~-~~~--   98 (241)
T 3grw_A           26 AVPAANTVRFRCPAAGNPT---PSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRG-NYTCVVENKF-GSI--   98 (241)
T ss_dssp             EEETTSEEEEECCEECSSC---CEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCE-EEEEEEEETT-EEE--
T ss_pred             EEcCCCeEEEEEEecCCCC---ceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCE-EEEEEEeecC-Cce--
Confidence            8899999999999987764   57999999987754322333344567889999999999997 9999999976 443  


Q ss_pred             cccceEEEEecC
Q psy5694         110 SVFQTRLSITGK  121 (129)
Q Consensus       110 S~~~~~L~V~ep  121 (129)
                      +. ...|.|..+
T Consensus        99 ~~-~~~l~V~~~  109 (241)
T 3grw_A           99 RQ-TYTLDVLER  109 (241)
T ss_dssp             EE-EEEEEEECC
T ss_pred             EE-EEEEEEecc
Confidence            22 357777653

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.22  E-value=1.8e-11  Score=94.53  Aligned_cols=95  Identities=18%  Similarity=0.226  Sum_probs=72.0

Q ss_pred             eeeeEeeeeeeEEEeCCeEEEEeeCC-------CCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCC
Q psy5694          19 QKYEINVNYEHNVILGNTAVLRCQIP-------SYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDG   91 (129)
Q Consensus        19 q~y~~~v~~~~~V~~GntAvL~C~vp-------~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~   91 (129)
                      ..|...+++. .|.+|+++.|.|.+.       +.+   .+.+.|.+++..+......+.|+. ..+|.|.|.+++.+|+
T Consensus        19 p~~~~~~~~~-~v~~G~~v~L~C~~~~~~~~~~~~p---~~~v~W~k~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~D~   93 (339)
T 3o4o_C           19 RFRGRHYKRE-FRLEGEPVALRCPQVPYWLWASVSP---RINLTWHKNDSARTVPGEEETRMW-AQDGALWLLPALQEDS   93 (339)
T ss_dssp             EEEEECSCCE-EEETTBCCEEECTTSCSSCCSTTSS---CCBCCCEESSCCSCCSCCSSSCEE-EETTEEEESSBCTTCC
T ss_pred             HhhCcCceEE-EEECCccEEEEeccccccccccCCC---CceEEEEECCCCcccCccccccEE-eeCCeEEECCCCcccC
Confidence            5677888888 999999999999997       444   357899999865321112245664 5789999999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEecCCC
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSITGKLK  123 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~~  123 (129)
                      | .|+|.+.|.. |..  +. ...|.|.++..
T Consensus        94 G-~Y~C~~~n~~-g~~--~~-~~~l~V~~~~~  120 (339)
T 3o4o_C           94 G-TYVCTTRNAS-YCD--KM-SIELRVFENTD  120 (339)
T ss_dssp             E-EEECCEEETT-EEE--EE-EEEEEEECSCG
T ss_pred             E-EEEEEEECCc-ceE--EE-EEEEEEEcCCC
Confidence            7 9999999986 442  33 55888876643

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.21  E-value=3.6e-11  Score=85.93  Aligned_cols=94  Identities=13%  Similarity=0.129  Sum_probs=67.8

Q ss_pred             eEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeec--------ccCCCceEEEccCccEEEeccCCCCCCc
Q psy5694          22 EINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYL--------NTDTGGKYVVLSSGDLYVFNATPNDGYK   93 (129)
Q Consensus        22 ~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~--------~~~~~~ry~vlpsG~L~I~nv~~~D~g~   93 (129)
                      ...+.+. .+.+|+++.|.|.+.+.+   .+.+.|.+++..+..        ....++|+.+.. +.|.|.+++.+|+| 
T Consensus         5 ~~~~~~~-~v~~G~~v~L~C~~~~~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~L~i~~v~~~D~G-   78 (212)
T 1f97_A            5 YTAQSDV-QVPENESIKLTCTYSGFS---SPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS-SGITFSSVTRKDNG-   78 (212)
T ss_dssp             ECSCSEE-EEETTCCEEEECEEESCS---SEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET-TEEEESCCCGGGCE-
T ss_pred             EecCCCe-EEEcCCCEEEEeEeCCCC---CcEEEEEECCCceeeEEecCCcccccccCcEEeec-eeEEEcccCcccCe-
Confidence            3445555 899999999999998665   367999998844210        012356776654 99999999999997 


Q ss_pred             ceEEEeecccCCeEEecccceEEEEecCCC
Q psy5694          94 SYRCRTVNKITGESQASVFQTRLSITGKLK  123 (129)
Q Consensus        94 ~Y~C~a~N~ltge~k~S~~~~~L~V~ep~~  123 (129)
                      .|+|.+.|.. |....+. ...|.|..++.
T Consensus        79 ~Y~C~~~~~~-g~~~~~~-~~~l~V~~~p~  106 (212)
T 1f97_A           79 EYTCMVSEEG-GQNYGEV-SIHLTVLVPPS  106 (212)
T ss_dssp             EEEEEEEETT-SSSEEEE-EEEEEEEBCCC
T ss_pred             EEEEEEEccC-CCcccEE-EEEEEEEcCCC
Confidence            9999999986 4323333 56777776543

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.21  E-value=6.5e-11  Score=92.57  Aligned_cols=85  Identities=19%  Similarity=0.284  Sum_probs=67.3

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEee
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      +...+.+. .+..|+++.|.|.+.+.|+   +.++|++|+..|..    +.|+.+ .+|.|.|.+++.+|+| .|+|.|.
T Consensus       297 ~~~~~~~~-~~~~g~~~~l~C~~~g~p~---p~v~W~~~g~~~~~----~~~~~~-~~~~L~i~~v~~~d~G-~Y~C~a~  366 (382)
T 1cs6_A          297 WLDVITDT-EADIGSDLRWSCVASGKPR---PAVRWLRDGQPLAS----QNRIEV-SGGELRFSKLVLEDSG-MYQCVAE  366 (382)
T ss_dssp             EEECCCCE-EEETTCCEEEECEEEEESC---CEEEEEETTEECCC----CSSEEE-ETTEEEESSCCGGGCE-EEEEEEE
T ss_pred             cccCCCcc-EEcCCCeEEEEEEeeeecC---CEEEEEECCEECCC----CceEEE-ECCEEEECcCCcccCE-EEEEEEE
Confidence            44455566 8899999999999977664   56899999988743    467765 5789999999999997 9999999


Q ss_pred             cccCCeEEecccceEEEEe
Q psy5694         101 NKITGESQASVFQTRLSIT  119 (129)
Q Consensus       101 N~ltge~k~S~~~~~L~V~  119 (129)
                      |.+ |+...   .+.|.|.
T Consensus       367 N~~-G~~~~---~~~l~V~  381 (382)
T 1cs6_A          367 NKH-GTVYA---SAELTVQ  381 (382)
T ss_dssp             ETT-EEEEE---EEEEEEE
T ss_pred             eCC-CeEEE---EEEEEEe
Confidence            998 66433   4477774

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.21  E-value=1.4e-11  Score=89.28  Aligned_cols=89  Identities=18%  Similarity=0.165  Sum_probs=63.3

Q ss_pred             eEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeec
Q psy5694          22 EINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVN  101 (129)
Q Consensus        22 ~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N  101 (129)
                      ...++ . .|.+|+++.|.|.+.+.+.    .+.|++++..+...  ...+.....++.|.|.+|+.+|+| .|+|.|.|
T Consensus         9 ~~~p~-~-~v~~G~~v~L~C~~~~~~~----~~~W~k~g~~~~~~--~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~a~n   79 (196)
T 2d3v_A            9 WAEPG-S-VISRGNSVTIRCQGTLEAQ----EYRLVKEGSPEPWD--TQNPLEPKNKARFSIPSMTEHHAG-RYRCYYYS   79 (196)
T ss_dssp             EEESC-S-EEETTCCEEEEEECCTTCC----EEEEEETTCSSCSE--EECCCSSTTEEEEEESSCCGGGCE-EEEEEEEE
T ss_pred             EeCCC-C-cccCCCeEEEEEeCCCCCc----EEEEEECCCCCCcc--cccccCCccccEEEeccCChhHCe-EEEEEEeC
Confidence            34444 4 6889999999999987652    68999998655321  001111235788999999999997 99999999


Q ss_pred             ccCCeEEecccceEEEEecC
Q psy5694         102 KITGESQASVFQTRLSITGK  121 (129)
Q Consensus       102 ~ltge~k~S~~~~~L~V~ep  121 (129)
                      .. |....|. ...|.|.++
T Consensus        80 ~~-g~~~~s~-~~~l~V~~~   97 (196)
T 2d3v_A           80 PA-GWSEPSD-PLELVVTGF   97 (196)
T ss_dssp             TT-EECBCCC-CEEEEEECS
T ss_pred             CC-CcCCcCc-cEEEEecCC
Confidence            75 4433344 678888863

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.20  E-value=3.2e-11  Score=81.68  Aligned_cols=75  Identities=12%  Similarity=0.102  Sum_probs=56.0

Q ss_pred             CeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEc-------cCccEEEeccCCCCCCcceEEEeecccCCeE
Q psy5694          35 NTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL-------SSGDLYVFNATPNDGYKSYRCRTVNKITGES  107 (129)
Q Consensus        35 ntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl-------psG~L~I~nv~~~D~g~~Y~C~a~N~ltge~  107 (129)
                      ..+.|.|.+.+.|+   +.+.|++|+..|..    +.++.+.       .+|.|.|.+++.+|+| .|+|.|.|.+ |+.
T Consensus        21 ~~~~l~C~~~g~P~---p~i~W~k~g~~l~~----~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~N~~-G~~   91 (118)
T 1wwc_A           21 LEHCIEFVVRGNPP---PTLHWLHNGQPLRE----SKIIHVEYYQEGEISEGCLLFNKPTHYNNG-NYTLIAKNPL-GTA   91 (118)
T ss_dssp             CEEEEEEEEECSSC---CEEEEEETTEECCC----SSSEEEEEEECSSEEEEEEEEESCCGGGCE-EEEEEEEETT-EEE
T ss_pred             cceEEEEEeeeeCC---CeEEEEECCEECCC----CCceeEEEeccCccccEEEEECCCChhcCE-EEEEEEECCC-CeE
Confidence            56789999988774   57999999988753    2333332       4678999999999997 9999999998 664


Q ss_pred             EecccceEEEEecC
Q psy5694         108 QASVFQTRLSITGK  121 (129)
Q Consensus       108 k~S~~~~~L~V~ep  121 (129)
                      ..   .+.|.|.++
T Consensus        92 ~~---~~~l~v~~~  102 (118)
T 1wwc_A           92 NQ---TINGHFLKE  102 (118)
T ss_dssp             EE---EEEECCSCC
T ss_pred             ee---EEEEEEccC
Confidence            33   346555543

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.20  E-value=2.6e-11  Score=86.49  Aligned_cols=85  Identities=24%  Similarity=0.412  Sum_probs=64.4

Q ss_pred             EEEeCCeEEEEeeC-CCCCCCceeEeEEeecceeeecccC-----CCceEEEc-cCccEEEeccCCCCCCcceEEEeecc
Q psy5694          30 NVILGNTAVLRCQI-PSYMSEYIIVTSWIQDDVNIYLNTD-----TGGKYVVL-SSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        30 ~V~~GntAvL~C~v-p~~~~~~v~v~sW~~d~~~i~~~~~-----~~~ry~vl-psG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      .+..|+++.|.|.+ .+.|+   +.++|++++..|.....     ..++|.+. .++.|.|.+++.+|.| .|+|.|.|.
T Consensus       118 ~~~~g~~~~l~C~~~~~~p~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~n~  193 (209)
T 1nbq_A          118 SATIGNRAVLTCSEQDGSPP---SEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTG-EYSCEARNG  193 (209)
T ss_dssp             EEETTSCEEECCCCCSCBSC---CEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCC-CEEEEEECS
T ss_pred             ceecCCEEEEEEeCCCCCCC---ceeEEEECCeeCCCccccceeeeccceEEcCCcceEEEEeccccCCe-EEEEEEeCC
Confidence            68899999999997 55553   57999999977643211     12456554 5789999999999998 999999999


Q ss_pred             cCCeEEecccceEEEEec
Q psy5694         103 ITGESQASVFQTRLSITG  120 (129)
Q Consensus       103 ltge~k~S~~~~~L~V~e  120 (129)
                      . |....|. ...|.|++
T Consensus       194 ~-g~~~~s~-~v~l~V~d  209 (209)
T 1nbq_A          194 Y-GTPMTSN-AVRMEAVE  209 (209)
T ss_dssp             S-SCCEECC-CBCCEEEC
T ss_pred             c-Ccccccc-cEEEEEeC
Confidence            8 6655555 66777754

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.20  E-value=7.7e-11  Score=88.49  Aligned_cols=93  Identities=17%  Similarity=0.307  Sum_probs=69.5

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEee
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      +...+... .+..|+++.|.|.+.+.+.   +.+.|++++..+..  ..+.|+.+..+|.|.|.+++.+|+| .|+|.+.
T Consensus       101 ~~~~~~~~-~v~~G~~v~l~C~~~~~p~---~~v~W~~~~~~~~~--~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~~~  173 (291)
T 2wim_A          101 FREVVSPQ-EFKQGEDAEVVCRVSSSPA---PAVSWLYHNEEVTT--ISDNRFAMLANNNLQILNINKSDEG-IYRCEGR  173 (291)
T ss_dssp             CCSCCCSE-EEETTSCEEECCCCBCSSC---CEEEEECC----CB--CCCSSEEECTTSCEEETTCCGGGCE-EEEEEEE
T ss_pred             eEeCCCCh-hhcCCCCEEEEEEEccCCC---CEEEEEECCccccc--cCCceEEEccCCCEEEEecchhhCE-EEEEEEE
Confidence            33445555 7899999999999987764   56899999866643  2468999999999999999999997 9999999


Q ss_pred             cccCCeEEecccceEEEEecCC
Q psy5694         101 NKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus       101 N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      |...++.. +. ...|.|..|+
T Consensus       174 n~~~~~~~-~~-~~~~~v~~~p  193 (291)
T 2wim_A          174 VEARGEID-FR-DIIVIVNVPP  193 (291)
T ss_dssp             ETTTTEEE-EE-EEEEEEEBCC
T ss_pred             ECCCCeeE-Ee-eEEEEeccCC
Confidence            99866642 32 4466776554

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=99.19  E-value=4.6e-11  Score=80.83  Aligned_cols=92  Identities=18%  Similarity=0.298  Sum_probs=63.7

Q ss_pred             EeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e---ee-ecc--cCCCceEEEccCc------cEEEeccCC
Q psy5694          23 INVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NI-YLN--TDTGGKYVVLSSG------DLYVFNATP   88 (129)
Q Consensus        23 ~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~---~i-~~~--~~~~~ry~vlpsG------~L~I~nv~~   88 (129)
                      ..+.+. .|.+|++|.|.|.+...+    +.+.|++..  .   .| ...  ....+|+.+..++      .|.|.|++.
T Consensus         6 q~p~~~-~v~~G~~v~L~C~~~~~~----~~v~W~r~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~   80 (113)
T 1h5b_A            6 QSPSAL-SLHEGTDSALRCNFTTTM----RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQL   80 (113)
T ss_dssp             EECSEE-EEETTCCEEEEEEESSCC----SEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCG
T ss_pred             ECCCEE-EEecCCcEEEEEEECCCC----ceEEEEEECCCCCeEEEEEECCCCccCCceEEEEccCCCCEEEEEECCCCh
Confidence            345555 899999999999987543    358998753  1   12 110  0135788886554      799999999


Q ss_pred             CCCCcceEEEeecccCC-eEEecccceEEEEecC
Q psy5694          89 NDGYKSYRCRTVNKITG-ESQASVFQTRLSITGK  121 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~ltg-e~k~S~~~~~L~V~ep  121 (129)
                      +|+| .|.|.+.|..+. ...... ..+|.|.+.
T Consensus        81 ~DsG-~Y~C~~~n~~~~~~~~fg~-gT~L~V~~~  112 (113)
T 1h5b_A           81 EDSG-TYFCAAEASSGSWQLIFGS-GTQLTVMPV  112 (113)
T ss_dssp             GGCE-EEEEEEECSSSSSSCEECC-CEEEEEECC
T ss_pred             hhCE-EEEEEEecCCCCcEEEECC-CcEEEEEEC
Confidence            9997 999999997532 222333 668888753

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.19  E-value=1.9e-11  Score=92.51  Aligned_cols=78  Identities=17%  Similarity=0.261  Sum_probs=59.2

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccC-ccEEEeccCCCCCCcceEEEeecccCCeEE
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS-GDLYVFNATPNDGYKSYRCRTVNKITGESQ  108 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlps-G~L~I~nv~~~D~g~~Y~C~a~N~ltge~k  108 (129)
                      .+..|.++.|.|.+.+.|++  ..++|++|+..|.+    ++||.+..+ +.|.|.+++.+|+| .|+|.|.|.+ |+..
T Consensus       232 ~v~~G~~~~l~C~~~~~p~~--~~v~W~~~g~~~~~----~~~~~~~~~~~~L~I~~v~~~d~G-~Y~C~a~N~~-G~~~  303 (312)
T 2y23_A          232 EVTGECNVLLKCKVANIKKE--THIVWYKDEREISV----DEKHDFKDGICTLLITEFSKKDAG-IYEVILKDDR-GKDK  303 (312)
T ss_dssp             EEETTTEEEEEEEEESCCSS--CEEEEEETTEEEEE----ECCC----CEEEEEECSCSGGGCE-EEEEEEESTT-CCEE
T ss_pred             EEeCCCEEEEEEEEcCCCCC--CEEEEeeCCEECCC----CCcEEEECCEEEEEECcCCHHHCE-EEEEEEEcCC-Ccee
Confidence            78999999999999887653  26899999988753    367766643 68999999999997 9999999998 6533


Q ss_pred             ecccceEEEE
Q psy5694         109 ASVFQTRLSI  118 (129)
Q Consensus       109 ~S~~~~~L~V  118 (129)
                      .   .+.|++
T Consensus       304 ~---~~~l~i  310 (312)
T 2y23_A          304 S---RLKLVD  310 (312)
T ss_dssp             E---EEEECS
T ss_pred             e---eeEEEe
Confidence            3   335554

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.19  E-value=4.5e-11  Score=100.13  Aligned_cols=89  Identities=18%  Similarity=0.421  Sum_probs=70.6

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccC---ccEEEeccCCCCCCcceEE
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS---GDLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlps---G~L~I~nv~~~D~g~~Y~C   97 (129)
                      |...+.+. .+.+|.++.|.|.+.+.|+   +.++|.+|+..|.    .+.+|.+..+   +.|.|.+++.+|+| .|+|
T Consensus       387 ~~~~~~~~-~~~~G~~v~l~C~~~g~P~---p~v~W~k~g~~l~----~~~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C  457 (570)
T 3b43_A          387 FRKKPHPV-ETLKGADVHLECELQGTPP---FQVSWHKDKRELR----SGKKYKIMSENFLTSIHILNVDSADIG-EYQC  457 (570)
T ss_dssp             ECSCCCCE-EECTTCCEEEEEEEESSSS---CCCEEEETTEECC----SSSSEEEEEETTEEEEEECSCCGGGCE-EEEE
T ss_pred             eecCCCce-eecCCCEEEEEEEEecCCC---CEEEEEECCEECc----CCCCEEEEEcCCEEEEEECCCChhhCE-EEEE
Confidence            44455556 7889999999999988774   5689999998874    3578887754   47999999999997 9999


Q ss_pred             EeecccCCeEEecccceEEEEecCC
Q psy5694          98 RTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        98 ~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      .|.|.+ |+...   .+.|.|.+|+
T Consensus       458 ~A~N~~-G~~~~---~~~l~v~~~P  478 (570)
T 3b43_A          458 KASNDV-GSDTC---VGSITLKAPP  478 (570)
T ss_dssp             EEECSS-CEEEE---EEEEEECCCC
T ss_pred             EEEECC-CeEEE---EEEEEeccCC
Confidence            999998 65332   4588887664

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.18  E-value=6.4e-11  Score=83.46  Aligned_cols=77  Identities=26%  Similarity=0.431  Sum_probs=60.5

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc-CccEEEeccCCCCCCcceEEEeecccCCeEE
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS-SGDLYVFNATPNDGYKSYRCRTVNKITGESQ  108 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp-sG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k  108 (129)
                      .+..|.++.|.|.+.+.|.   +.++|++++..|..    +.++.+.. ++.|.|.+++.+|.| .|+|.|.|.. |...
T Consensus       109 ~~~~g~~v~l~C~~~g~p~---~~v~W~~~g~~~~~----~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~n~~-g~~~  179 (189)
T 2v5t_A          109 TAERGEEMTFSCRASGSPE---PAISWFRNGKLIEE----NEKYILKGSNTELTVRNIINSDGG-PYVCRATNKA-GEDE  179 (189)
T ss_dssp             ETTSCCCEEEECEEEEESC---CEEEEEETTEECCC----SSSEEEETTTTEEEECSCCGGGCE-EEEEEEEETT-EEEE
T ss_pred             cccCCCcEEEEEEEccCCC---CeEEEEECCEECcC----CCcEEEecCCCEEEEcCCChhhCe-eEEEEEEeCC-Ccee
Confidence            5678999999999977653   56899999987743    46776654 678999999999997 9999999998 6543


Q ss_pred             ecccceEEEE
Q psy5694         109 ASVFQTRLSI  118 (129)
Q Consensus       109 ~S~~~~~L~V  118 (129)
                      .+   ..|.|
T Consensus       180 ~~---~~l~V  186 (189)
T 2v5t_A          180 KQ---AFLQV  186 (189)
T ss_dssp             EE---EEEEE
T ss_pred             EE---EEEEE
Confidence            33   35554

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.18  E-value=1.1e-10  Score=88.93  Aligned_cols=88  Identities=16%  Similarity=0.319  Sum_probs=62.9

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEc--cCc---cEEEeccCC-CCCCc
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL--SSG---DLYVFNATP-NDGYK   93 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl--psG---~L~I~nv~~-~D~g~   93 (129)
                      .|...+++. .+.+|+++.|.|.+.+.+.   +.+.|++++..|.     .+|+.+.  .+|   .|.|.+++. +|+| 
T Consensus         8 ~~~~~p~~~-~v~~G~~v~l~C~~~g~p~---~~i~W~k~g~~i~-----~~~~~~~~~~~~~~~~L~i~~~~~~~D~G-   77 (304)
T 2yd9_A            8 RFIKEPKDQ-IGVSGGVASFVCQATGDPK---PRVTWNKKGKKVN-----SQRFETIEFDESAGAVLRIQPLRTPRDEN-   77 (304)
T ss_dssp             EEEECCCCE-EEETTSCEEEEEEEECSSC---CEEEEC------------CTTEEEEEETTTTEEEEEECSCCTTTTCS-
T ss_pred             eeeecCCce-EecCCCeEEEEEEEEEeCC---CeEEEEECCEECC-----CCceEEEEecCCCceEEEEecccccCCCe-
Confidence            455667777 8999999999999977663   5789999997763     3455543  454   599999998 9997 


Q ss_pred             ceEEEeecccCCeEEecccceEEEEecC
Q psy5694          94 SYRCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        94 ~Y~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      .|+|.|.|.. |.  .+. .+.|.|..+
T Consensus        78 ~Y~C~a~n~~-g~--~~~-~~~l~V~~~  101 (304)
T 2yd9_A           78 VYECVAQNSV-GE--ITV-HAKLTVLRE  101 (304)
T ss_dssp             EEEEEEECSS-CE--ECC-EEEEEEECG
T ss_pred             EEEEEEECCC-Ce--EEE-EEEEEEecc
Confidence            9999999987 55  243 668888764

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.18  E-value=6.3e-11  Score=90.34  Aligned_cols=90  Identities=20%  Similarity=0.300  Sum_probs=69.0

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEee
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      +...+... .+..|.++.|.|.+.+.+.   +.++|++++..|... ....++....+|.|.|.+++.+|+| .|+|.|.
T Consensus       111 i~~~~~~~-~v~~g~~v~l~C~~~g~p~---~~v~W~k~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~  184 (304)
T 2yd9_A          111 IDMGPQLK-VVERTRTATMLCAASGNPD---PEITWFKDFLPVDPS-ASNGRIKQLRSGALQIESSEETDQG-KYECVAT  184 (304)
T ss_dssp             EEECCCCE-EEETTSCEEECCEEECSSC---CEEEEEETTEECCGG-GGTTSEEECTTSCEEECSCCGGGCE-EEEEEEE
T ss_pred             eecCCccE-EEeCCCeEEEEEECccCCC---CeEEEEECCEECcCC-CCcceEEeCCCeEEEEccCCcccCE-EEEEEEE
Confidence            44455555 7889999999999987764   579999999777542 2345787889999999999999997 9999999


Q ss_pred             cccCCeEEecccceEEEEe
Q psy5694         101 NKITGESQASVFQTRLSIT  119 (129)
Q Consensus       101 N~ltge~k~S~~~~~L~V~  119 (129)
                      |.. |... +. .+.|.|.
T Consensus       185 n~~-g~~~-~~-~~~l~v~  200 (304)
T 2yd9_A          185 NSA-GVRY-SS-PANLYVR  200 (304)
T ss_dssp             ETT-EEEE-CC-CEEEEEE
T ss_pred             eCC-CCEE-ec-cEEEEEE
Confidence            987 5432 22 3566664

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.17  E-value=4.2e-11  Score=84.67  Aligned_cols=79  Identities=14%  Similarity=0.166  Sum_probs=62.5

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccC---ccEEEeccCC-CCCCcceEEEeecccCC
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS---GDLYVFNATP-NDGYKSYRCRTVNKITG  105 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlps---G~L~I~nv~~-~D~g~~Y~C~a~N~ltg  105 (129)
                      .+..|.++.|.|.+.+.|+   +.++|++++..|.    .+.++.+..+   +.|.|.+++. +|.| .|+|.|.|.+ |
T Consensus       114 ~~~~g~~~~l~C~~~~~p~---p~v~W~~~~~~~~----~~~~~~~~~~~~~~~L~i~~~~~~~d~G-~Y~C~a~n~~-g  184 (197)
T 3lcy_A          114 YGAVGSTLRLHVMYIGRPV---PAMTWFHGQKLLQ----NSENITIENTEHYTHLVMKNVQRKTHAG-KYKVQLSNVF-G  184 (197)
T ss_dssp             EEETTSCEEEEEEEEEESC---CEEEEEETTEECC----CCSSEEEEECSSEEEEEESSCCHHHHCE-EEEEEEECSS-C
T ss_pred             eecCCCeEEEEEEEeeeeC---CeeEEeECCEECC----CCCceEEEEcCCEEEEEEccccchhhCc-eEEEEEEcCc-C
Confidence            6788999999999987764   5689999998774    3467777654   6799999995 8997 9999999998 6


Q ss_pred             eEEecccceEEEEec
Q psy5694         106 ESQASVFQTRLSITG  120 (129)
Q Consensus       106 e~k~S~~~~~L~V~e  120 (129)
                      ....   ...|.|.+
T Consensus       185 ~~~~---~~~l~V~~  196 (197)
T 3lcy_A          185 TVDA---ILDVEIQD  196 (197)
T ss_dssp             EEEE---EEEEEEEC
T ss_pred             ceEE---EEEEEEec
Confidence            6432   44777765

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.17  E-value=1.8e-10  Score=83.34  Aligned_cols=86  Identities=17%  Similarity=0.307  Sum_probs=61.7

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeec--c---eeeecc-----cCCCceEEEc---cCccEEEeccCCCCCCcceE
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQD--D---VNIYLN-----TDTGGKYVVL---SSGDLYVFNATPNDGYKSYR   96 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d--~---~~i~~~-----~~~~~ry~vl---psG~L~I~nv~~~D~g~~Y~   96 (129)
                      .|.+|++|+|.|.+.+.+   .+.+.|++.  +   ..+...     ....+||.+.   .++.|.|.||+.+|+| .|+
T Consensus        11 ~v~~G~~v~L~C~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G-~Y~   86 (213)
T 3mj8_L           11 SVALGQKATITCSGDKLS---DVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEA-DYY   86 (213)
T ss_dssp             EEETTSCEEEEEECSSTT---TSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCE-EEE
T ss_pred             EEeCCCCEEEEEEcCCCC---CceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCE-EEE
Confidence            889999999999998555   357899983  2   112110     0134688754   3556999999999997 999


Q ss_pred             EEeecccCCeEEecccceEEEEec
Q psy5694          97 CRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        97 C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      |.+.|..++....+. ...|.|..
T Consensus        87 C~~~~~~~~~~~~~~-~~~l~V~~  109 (213)
T 3mj8_L           87 CQSWDGTNSAWVFGS-GTKVTVLG  109 (213)
T ss_dssp             EEEEETTTTEEEEBC-CEEEEEEC
T ss_pred             EEeccCCcceeEEcC-ceEEEEeC
Confidence            999998743334444 67888884

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.17  E-value=9.7e-11  Score=86.01  Aligned_cols=83  Identities=13%  Similarity=0.051  Sum_probs=59.8

Q ss_pred             eeeeeEEEeC--CeEEEEeeCCCCCCCceeEeEEeec---ceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEe
Q psy5694          25 VNYEHNVILG--NTAVLRCQIPSYMSEYIIVTSWIQD---DVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        25 v~~~~~V~~G--ntAvL~C~vp~~~~~~v~v~sW~~d---~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a   99 (129)
                      +++. .|.+|  ++|+|.|.+.+ +.   +.++|.++   +..+.    .+.++...+++.|.|.+++.+|+| .|+|.|
T Consensus        14 p~~v-~v~eG~~~~v~L~C~~~~-p~---~~v~w~~~~~~g~~~~----~~~~~~~~~~~~l~I~~v~~~D~G-~Y~C~a   83 (213)
T 2x1w_L           14 HGVV-YITENKNKTVVIPCLGSI-SN---LNVSLCARYPEKRFVP----DGNRISWDSKKGFTIPSYMISYAG-MVFCEA   83 (213)
T ss_dssp             CEEE-EECCSTTCEEEECCCBSS-TT---CCEEEEEETTTEEECC----CSSSCEEETTTEEEEEGGGTTTCS-EEEEEE
T ss_pred             ceEE-EEecCCCccEEEeeccCC-CC---cEEEEEhhcCCCcccc----CCCcccccCCccEEEccCChhcCc-eEEEEE
Confidence            4555 89999  99999999965 32   56899885   45542    245677778899999999999998 999999


Q ss_pred             ecccCCeEEecccceEEEEec
Q psy5694         100 VNKITGESQASVFQTRLSITG  120 (129)
Q Consensus       100 ~N~ltge~k~S~~~~~L~V~e  120 (129)
                      .|.  |....|. ...|.|.+
T Consensus        84 ~n~--~~~~~s~-~~~l~v~~  101 (213)
T 2x1w_L           84 KIN--DESYQSI-MYIVVVVG  101 (213)
T ss_dssp             C------CEECC-CEEEEECB
T ss_pred             EEC--CeeEEEE-EEEEEEeC
Confidence            994  4434454 45666643

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.17  E-value=1.2e-10  Score=91.09  Aligned_cols=89  Identities=12%  Similarity=0.164  Sum_probs=66.1

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEee
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      +...+.+. .+.+|+++.|.|.+.+.|+   +.++|++|+..|... ....++ ...++.|.|.+++.+|+| .|+|.|.
T Consensus       315 ~~~~~~~~-~v~~g~~~~l~C~~~g~p~---p~v~W~~~g~~~~~~-~~~~~~-~~~~~~L~i~~v~~~d~G-~Y~C~a~  387 (404)
T 3p3y_A          315 WLDEPKNL-ILAPGEDGRLVCRANGNPK---PTVQWMVNGEPLQSA-PPNPNR-EVAGDTIIFRDTQISSRA-VYQCNTS  387 (404)
T ss_dssp             EEECCCCE-EECTTCCEEEECEEEEESC---CEEEEEETTEEGGGS-CCCTTE-EEETTEEEESSCCSSCCC-EEEEEEE
T ss_pred             eeccCCcc-eeecCCcEEEEEEccccCC---CceEEEECCEecCCC-CCCceE-EecCCEEEEeecCHHHCE-EEEEEEE
Confidence            44455556 8889999999999987764   569999999877542 112233 346789999999999997 9999999


Q ss_pred             cccCCeEEecccceEEEEec
Q psy5694         101 NKITGESQASVFQTRLSITG  120 (129)
Q Consensus       101 N~ltge~k~S~~~~~L~V~e  120 (129)
                      |.+ |+...   .+.|.|.+
T Consensus       388 N~~-G~~~~---~~~l~V~d  403 (404)
T 3p3y_A          388 NEH-GYLLA---NAFVSVLD  403 (404)
T ss_dssp             ETT-EEEEE---EEEEEEC-
T ss_pred             eCC-CcEEE---EEEEEEEe
Confidence            998 66433   44777653

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.17  E-value=1.1e-10  Score=85.13  Aligned_cols=89  Identities=22%  Similarity=0.352  Sum_probs=65.8

Q ss_pred             eeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEE--cc---CccEEEecc-CCCCCC
Q psy5694          19 QKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV--LS---SGDLYVFNA-TPNDGY   92 (129)
Q Consensus        19 q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~v--lp---sG~L~I~nv-~~~D~g   92 (129)
                      ..|...+.+. .+.+|+++.|.|.+.+.+.   +.+.|++++..|..     +++..  ..   +..|.|.++ +.+|+|
T Consensus         7 P~~~~~p~~~-~v~~G~~v~L~C~~~g~p~---~~v~W~k~~~~~~~-----~~~~~~~~~~~~~~~L~i~~v~~~~d~G   77 (212)
T 2yd6_A            7 PRFTRTPVDQ-TGVSGGVASFICQATGDPR---PKIVWNKKGKKVSN-----QRFEVIEFDDGSGSVLRIQPLRTPRDEA   77 (212)
T ss_dssp             EEEEECCCCE-EEETTSCEEEEEEEEEESC---CEEEEEETTEECCC-----TTEEEEEEGGGTEEEEEECSCCTTTTCE
T ss_pred             CeEEeCccee-EEecCCeEEEEEEEeeCCC---CEEEEEECCcCCCC-----CceeEEEEcCCCceEEEEeccCCCCCCe
Confidence            3456667777 8999999999999986653   57999999977742     23322  22   335999999 499997


Q ss_pred             cceEEEeecccCCeEEecccceEEEEecC
Q psy5694          93 KSYRCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        93 ~~Y~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                       .|+|.|.|.. |+.  +. ...|.|..+
T Consensus        78 -~Y~C~a~n~~-g~~--~~-~~~l~V~~~  101 (212)
T 2yd6_A           78 -IYECVASNNV-GEI--SV-STRLTVLRE  101 (212)
T ss_dssp             -EEEEEEEETT-EEE--EE-EEEEEEECG
T ss_pred             -EEEEEEEcCC-CcE--EE-EEEEEEecc
Confidence             9999999987 552  33 557777654

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.17  E-value=2e-11  Score=88.19  Aligned_cols=83  Identities=19%  Similarity=0.146  Sum_probs=59.0

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCce-EEEccCccEEEeccCCCCCCcceEEEeecccCCe--
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGK-YVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGE--  106 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~r-y~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge--  106 (129)
                      .|.+|+++.|.|.+.+.+    +.+.|.+|+..+... ....+ .....++.|.|.+|+.+|+| .|+|.|.|.....  
T Consensus       110 ~v~~G~~v~L~C~~~~~~----~~~~w~k~g~~~~~~-~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a~n~~~~~~~  183 (196)
T 3p2t_A          110 LVTSGKSVTLLCQSRSPM----DTFLLCKERAAHPLL-CLRSEHGAQQHQAEFPMSPVTSVHGG-TYRCFSSHGFSHYLL  183 (196)
T ss_dssp             EECTTCCEEEEEEEEEEE----EEEEEEETTCCCGGG-SEEEEEEEEEEEEEEEECSCCGGGCE-EEEEEEECGGGTTEE
T ss_pred             eecCCCeEEEEEecCCCC----CEEEEEeCCCcccce-eecccccccCcceEEEeCCCcccCCC-eEEEEEEcCCCCccc
Confidence            578999999999986532    468999998655321 00111 12345789999999999997 9999999987422  


Q ss_pred             EEecccceEEEEe
Q psy5694         107 SQASVFQTRLSIT  119 (129)
Q Consensus       107 ~k~S~~~~~L~V~  119 (129)
                      ...|. +..|.|+
T Consensus       184 s~~S~-~~~l~V~  195 (196)
T 3p2t_A          184 SHPSD-PLELIVS  195 (196)
T ss_dssp             CCCCC-CEEEEEC
T ss_pred             CCCCC-CEEEEeC
Confidence            23355 6788776

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.17  E-value=8.8e-11  Score=88.08  Aligned_cols=91  Identities=18%  Similarity=0.200  Sum_probs=63.2

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCC--ceeEeEEeecc--e---e-eec----ccCCCceEEEccCc---cEEEeccCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSE--YIIVTSWIQDD--V---N-IYL----NTDTGGKYVVLSSG---DLYVFNATPN   89 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~--~v~v~sW~~d~--~---~-i~~----~~~~~~ry~vlpsG---~L~I~nv~~~   89 (129)
                      +... .|.+|++|.|.|.+.+.++.  -.+.+.|++++  .   . ++.    .....+||.+..+|   .|.|.|++.+
T Consensus        41 p~~~-~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~  119 (252)
T 3bkj_L           41 PLSL-PVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRVEAE  119 (252)
T ss_dssp             CSEE-EECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CceE-EEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCCCcc
Confidence            5555 89999999999999776521  13568999864  1   1 110    01124788887655   7999999999


Q ss_pred             CCCcceEEEeecccCCeEEecccceEEEEec
Q psy5694          90 DGYKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        90 D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      |+| .|.|.+.|.. +. ..+. ..+|.|..
T Consensus       120 D~G-~Y~C~~~~~~-~~-~~~~-~~~l~V~~  146 (252)
T 3bkj_L          120 DLG-VYYCFQASLV-PL-TFGA-GTKLELKR  146 (252)
T ss_dssp             GCE-EEEEEECSBS-SC-EECC-CEEEEECC
T ss_pred             cCE-EEEEEEEcCC-cc-EECC-CEEEEEeC
Confidence            997 9999999975 32 2232 44777764

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.17  E-value=1.1e-10  Score=91.29  Aligned_cols=85  Identities=20%  Similarity=0.354  Sum_probs=65.5

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEee
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      +...+.+.+.+..|+++.|.|.+.+.|+   +.++|.+|+..|.     ++|+.+. +|.|.|.+++.+|+| .|+|.|.
T Consensus       311 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~---p~v~W~~~g~~~~-----~~~~~~~-~~~L~i~~~~~~d~G-~Y~C~a~  380 (395)
T 1bih_A          311 YEQKPEKVIVVKQGQDVTIPCKVTGLPA---PNVVWSHNAKPLS-----GGRATVT-DSGLVIKGVKNGDKG-YYGCRAT  380 (395)
T ss_dssp             EEECCCSEEEECTTSCEEEECEEEEESC---CCCEEEETTEECC-----SSSEEEE-TTEEEESSCCSTTCE-EEEEEEE
T ss_pred             cccCCCcceEecCCCeEEEEEEECcccC---CeeEEEECCEECC-----CCceEEE-CCEEEEeeCCcccCE-EEEEEEE
Confidence            4445555237899999999999987764   4589999998773     3477664 669999999999997 9999999


Q ss_pred             cccCCeEEecccceEEEEe
Q psy5694         101 NKITGESQASVFQTRLSIT  119 (129)
Q Consensus       101 N~ltge~k~S~~~~~L~V~  119 (129)
                      |.. |+...   .+.|.|+
T Consensus       381 N~~-G~~~~---~~~l~V~  395 (395)
T 1bih_A          381 NEH-GDKYF---ETLVQVN  395 (395)
T ss_dssp             ETT-EEEEE---EEEEEEC
T ss_pred             ccC-CCceE---EEEEEEC
Confidence            998 66433   3467663

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.17  E-value=6.2e-11  Score=92.16  Aligned_cols=86  Identities=15%  Similarity=0.167  Sum_probs=67.0

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecc--cCCeE
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK--ITGES  107 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~--ltge~  107 (129)
                      .+.+|+++.|.|.+.+.|.  .+.++|++++..|..   .+.+|... ++.|.|.+++.+|+| .|+|.|.|.  .+|..
T Consensus       139 ~~~~G~~v~L~C~~~g~p~--~~~i~W~k~~~~l~~---~~~~~~~~-~~~L~I~~v~~~D~G-~Y~C~a~n~~~~g~~~  211 (329)
T 3oq3_B          139 GTHDKYGIDLYCGILYAKH--YNNITWYKNNQELII---DGTKYSQS-GQNLIIHNPELEDSG-RYDCYVHYDDVRIKND  211 (329)
T ss_dssp             TSSTTTCEEEECCCCSCCC--CCEEEEEETTEECCC---SSSSEEEE-TTEEEECSCCGGGCE-EEEEEEEECCTTSSSC
T ss_pred             EEeCCCcEEEEeccCCCCC--CceEEEEECCccCCC---CCceEecC-CCEEEEeecChhhCE-EEEEEEEecccCCCce
Confidence            4667999999999988762  367999999977732   35778776 899999999999997 999999997  65553


Q ss_pred             EecccceEEEEecCC
Q psy5694         108 QASVFQTRLSITGKL  122 (129)
Q Consensus       108 k~S~~~~~L~V~ep~  122 (129)
                      ...+....|.|.++.
T Consensus       212 ~~~s~~~~l~V~~~~  226 (329)
T 3oq3_B          212 IVVSRCKILTVIPSQ  226 (329)
T ss_dssp             EEEEEEEEEEEECCC
T ss_pred             eEEEeeEEEEEECCC
Confidence            332225678887655

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.16  E-value=2e-10  Score=81.62  Aligned_cols=88  Identities=16%  Similarity=0.163  Sum_probs=66.1

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEe
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a   99 (129)
                      ++....... .+..|+++.|.|.+.+.++  .+.++|++|+..|...         ..++.|.|.+++.+|+| .|+|.|
T Consensus        87 ~~~~~~~~~-~~~~g~~~~l~C~~~~~~p--~~~~~W~~~g~~~~~~---------~~~~~L~i~~v~~~d~G-~Y~C~a  153 (176)
T 1f2q_A           87 WLLLQASAE-VVMEGQPLFLRCHGWRNWD--VYKVIYYKDGEALKYW---------YENHNISITNATVEDSG-TYYCTG  153 (176)
T ss_dssp             SEEEEESCS-EEETTSCEEEEEEEGGGCC--EEEEEEEETTEECCSC---------CCSSEEEESSCCGGGCE-EEEEEE
T ss_pred             ceeecCCcc-eeeCCCCEEEEEEecCCCC--ceEEEEEECCEEEeee---------cCCCeEEECCCCcccCE-EEEEEE
Confidence            344445556 7889999999999965443  3689999999776321         13578999999999997 999999


Q ss_pred             ecccCCeEEecccceEEEEecCCC
Q psy5694         100 VNKITGESQASVFQTRLSITGKLK  123 (129)
Q Consensus       100 ~N~ltge~k~S~~~~~L~V~ep~~  123 (129)
                      .|.. +. ..|. ...|.|.+++.
T Consensus       154 ~n~~-~~-~~s~-~~~l~V~~~p~  174 (176)
T 1f2q_A          154 KVWQ-LD-YESE-PLNITVIKAPR  174 (176)
T ss_dssp             EETT-EE-EECC-CEEEEEECSCC
T ss_pred             EeCC-cc-eEec-CEEEEEecCCC
Confidence            9974 33 3454 67999987753

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.16  E-value=1.1e-10  Score=89.78  Aligned_cols=87  Identities=21%  Similarity=0.303  Sum_probs=64.5

Q ss_pred             eeeeEEEeCCeEEEEeeCCCCCCCceeEeEEee----cceeeecccCCCceEEEccCc----------cEEEeccCCCCC
Q psy5694          26 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQ----DDVNIYLNTDTGGKYVVLSSG----------DLYVFNATPNDG   91 (129)
Q Consensus        26 ~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~----d~~~i~~~~~~~~ry~vlpsG----------~L~I~nv~~~D~   91 (129)
                      .+. .+..|.++.|.|.+.+.|.   +.++|++    ++..|.+.  ...++.++.++          .|.|.+++.+|+
T Consensus       230 ~~~-~~~~G~~v~l~C~~~g~p~---p~v~W~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  303 (334)
T 1ry7_B          230 ANQ-TAVLGSDVEFHCKVYSDAQ---PHIQWLKHVEVNGSKVGPD--GTPYVTVLKTAGANTTDKELEVLSLHNVTFEDA  303 (334)
T ss_dssp             CCE-EEESSCCEEECCCCBCSSC---EEEEEEECCCGGGCSBCTT--SSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSC
T ss_pred             Cce-EEeCCCCEEEEEEEecCCC---CeEEEEECCcCCCccccCC--CCeeEEEeecCccccccccccEEEEccCCHHHC
Confidence            445 7899999999999987664   5799999    66666432  12233344333          799999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEecCCC
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSITGKLK  123 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~~  123 (129)
                      | .|+|.|.|.+ |....   .+.|.|.++..
T Consensus       304 G-~Y~C~a~N~~-G~~~~---~~~l~V~~~~~  330 (334)
T 1ry7_B          304 G-EYTCLAGNSI-GFSHH---SAWLVVLPAEE  330 (334)
T ss_dssp             S-EEEEEEEESS-CCEEE---EEEEEEECSCC
T ss_pred             E-EEEEEEeCCC-CeEEE---EEEEEEEECCC
Confidence            8 9999999998 66433   45899987654

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.16  E-value=4.6e-11  Score=89.39  Aligned_cols=85  Identities=21%  Similarity=0.156  Sum_probs=58.4

Q ss_pred             EEEeCCeEEEEee---CCCCCCCceeEeEEeecceeeec-------------ccCCCceEEEcc---CccEEEeccCCCC
Q psy5694          30 NVILGNTAVLRCQ---IPSYMSEYIIVTSWIQDDVNIYL-------------NTDTGGKYVVLS---SGDLYVFNATPND   90 (129)
Q Consensus        30 ~V~~GntAvL~C~---vp~~~~~~v~v~sW~~d~~~i~~-------------~~~~~~ry~vlp---sG~L~I~nv~~~D   90 (129)
                      .+..|+.|+|.|.   +.+.|   .+.++|+|++..+..             .....+++.+..   ++.|.|.+++.+|
T Consensus         4 ta~~Ge~v~L~C~~~~v~~~p---~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   80 (203)
T 4fa8_A            4 TAFLGERVTLTSYWRRVSLGP---EIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISH   80 (203)
T ss_dssp             EEETTCCEEEEEECSSTTCST---TSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EEEcCCCEEEEeeeeccCCCC---CcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHH
Confidence            8899999999995   44444   357899998622110             011234455433   3469999999999


Q ss_pred             CCcceEEEeecccCCeEEecccceEEEEecCC
Q psy5694          91 GYKSYRCRTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        91 ~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      +| .|.|+|.|.. |+.  +. .+.|.|.+|+
T Consensus        81 ~G-~Y~C~a~n~~-g~~--~~-~~~l~V~~p~  107 (203)
T 4fa8_A           81 DG-NYLCRMKLGE-TEV--TK-QEHLSVVKPL  107 (203)
T ss_dssp             CE-EEEEEEEETT-EEE--EE-EEEEEEEEEE
T ss_pred             Ce-EEEEEEEcCC-CcE--EE-EEEEEecCCc
Confidence            97 9999999976 553  33 4588887653

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.16  E-value=1.3e-10  Score=90.08  Aligned_cols=99  Identities=13%  Similarity=0.107  Sum_probs=69.4

Q ss_pred             eeeeEeeeeeeEEEeCCeEEEEeeCCCCCC--------CceeEeEEeecceee---eccc--CCCceEEEccCccEEEec
Q psy5694          19 QKYEINVNYEHNVILGNTAVLRCQIPSYMS--------EYIIVTSWIQDDVNI---YLNT--DTGGKYVVLSSGDLYVFN   85 (129)
Q Consensus        19 q~y~~~v~~~~~V~~GntAvL~C~vp~~~~--------~~v~v~sW~~d~~~i---~~~~--~~~~ry~vlpsG~L~I~n   85 (129)
                      +++...+...+.|.+|+++.|.|.+.+.|.        ...+.+.|++++..+   .+..  ..+.|+ ...+|.|.|.+
T Consensus         7 ~~~~~~~~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~   85 (349)
T 4dep_C            7 DDWGLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRI-SKEKDVLWFRP   85 (349)
T ss_dssp             EEEEECCCCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCE-EEETTEEEESS
T ss_pred             cccccceeeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceE-eecCCEEEEcc
Confidence            455566555558999999999999987653        113679999988321   1100  123444 34688999999


Q ss_pred             cCCCCCCcceEEEeecccCCeEEecccceEEEEecCCC
Q psy5694          86 ATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGKLK  123 (129)
Q Consensus        86 v~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~~  123 (129)
                      ++.+|+| .|+|.|.|.. |+...   ...|.|.++..
T Consensus        86 ~~~~D~G-~Y~C~a~n~~-~~~~~---~~~l~V~~~~~  118 (349)
T 4dep_C           86 TLLNDTG-NYTCMLRNTT-YCSKV---AFPLEVVQKDS  118 (349)
T ss_dssp             CCGGGCE-EEEEEEECSS-CEEEE---EEEEEEECCCT
T ss_pred             CChhhCE-EEEEEEecCC-ceEEE---EEEEEEecCCc
Confidence            9999997 9999999975 55433   45788887544

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.16  E-value=1.2e-10  Score=85.92  Aligned_cols=88  Identities=16%  Similarity=0.177  Sum_probs=63.1

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-eeeecccCCCceEEEc-cCccEEEeccCCCCCCcceEEE
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYVVL-SSGDLYVFNATPNDGYKSYRCR   98 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-~~i~~~~~~~~ry~vl-psG~L~I~nv~~~D~g~~Y~C~   98 (129)
                      +++++++.+.+.+|.++.|.|.+.+.|.   +.++|.++. ..+      .++.... .++.|.|.+|+.+|+| .|+|.
T Consensus         3 v~i~p~~~~~~~~G~~v~L~C~~~g~P~---p~i~W~~~~~~~~------~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~   72 (202)
T 1vca_A            3 IETTPESRYLAQIGDSVSLTCSTTGCES---PFFSWRTQIDSPL------NGKVTNEGTTSTLTMNPVSFGNEH-SYLCT   72 (202)
T ss_dssp             EEEESSSEEEEETTSCEEEEEEEESCSS---CEEEEEETTCCCC------SSEEEEETTEEEEEESSCCGGGCS-EEEEE
T ss_pred             EEECCCCcEEEcCCCcEEEEEeecCCCC---CeEEEECCCCCCc------cceEEEcCCccEEEECcCCHHHCE-EEEEE
Confidence            4556666633449999999999987764   569998843 222      2333332 3567999999999998 99999


Q ss_pred             eecccCCeEEecccceEEEEecCC
Q psy5694          99 TVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        99 a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      |.|.. |.  .+. .+.|.|..+.
T Consensus        73 a~n~~-~~--~~~-~~~l~V~~~p   92 (202)
T 1vca_A           73 ATCES-RK--LEK-GIQVEIYSFP   92 (202)
T ss_dssp             EEETT-EE--EEE-EEEEEEEBCC
T ss_pred             EEECC-ce--Eee-EEEEEEEeCC
Confidence            99985 43  344 6688888654

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=99.16  E-value=6.6e-11  Score=78.01  Aligned_cols=74  Identities=20%  Similarity=0.261  Sum_probs=52.7

Q ss_pred             eEEEeCCeEEEEeeCCCCCCCceeEeEEeecce--------eeeccc-----CCCceEEEcc-----CccEEEeccCCCC
Q psy5694          29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDV--------NIYLNT-----DTGGKYVVLS-----SGDLYVFNATPND   90 (129)
Q Consensus        29 ~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~--------~i~~~~-----~~~~ry~vlp-----sG~L~I~nv~~~D   90 (129)
                      +.|.+|.+|.|.|.+.+.+......+.|.+.+.        .+....     ...+||.+..     ++.|.|+|++.+|
T Consensus         4 v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D   83 (109)
T 2oyp_A            4 YKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLDD   83 (109)
T ss_dssp             EEECTTSCEEECCBCCCCTTCCCCCEEEESSSCCSSSCSSEEEEECSSSEEEESCTTEEECSCGGGTBCCEEECSCCGGG
T ss_pred             EEEEcCCCEEEEEEeECCCCCCeEEEEEEecCCCCCCceeEEEEcCCcCccccccceEEEccCccCCcEeEEEccCCChh
Confidence            378899999999998765432234589999541        111110     1256787643     3689999999999


Q ss_pred             CCcceEEEeeccc
Q psy5694          91 GYKSYRCRTVNKI  103 (129)
Q Consensus        91 ~g~~Y~C~a~N~l  103 (129)
                      +| .|.|.+.|..
T Consensus        84 ~G-~Y~C~v~~~~   95 (109)
T 2oyp_A           84 HG-TYCCRIQFPG   95 (109)
T ss_dssp             CE-EEEEEECCSS
T ss_pred             Ce-EEEEEEEcCC
Confidence            97 9999999874

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.16  E-value=1.4e-10  Score=84.67  Aligned_cols=85  Identities=15%  Similarity=0.297  Sum_probs=61.9

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeec-ceeee---cc-----cCC--CceEEE-ccCccEEEeccCCCCCCcceEE
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQD-DVNIY---LN-----TDT--GGKYVV-LSSGDLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d-~~~i~---~~-----~~~--~~ry~v-lpsG~L~I~nv~~~D~g~~Y~C   97 (129)
                      .|.+|++|+|.|.+.. + +..+.+.|.++ +..|.   ..     .+.  .+|+.+ ..+|.|.|+|++.+|+| .|+|
T Consensus        10 ~v~~G~~vtL~c~~~~-~-~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G-~Y~C   86 (180)
T 2dru_A           10 NAITGSNVTLTILKHP-L-ASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRG-DYYM   86 (180)
T ss_dssp             EEETTSCEEECCCSSC-C-CSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCE-EEEE
T ss_pred             EEEeCCCEEEeCCCCC-C-CceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCe-EEEE
Confidence            8999999999999853 2 22467999994 33321   10     012  278988 68999999999999997 9999


Q ss_pred             EeecccCCeEEecccceEEEEecCC
Q psy5694          98 RTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        98 ~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      .+.+..    ..+. ...|.|.++.
T Consensus        87 ~v~~~~----~~~~-~~~L~V~~~~  106 (180)
T 2dru_A           87 RMLHET----EDQW-KITMEVYEMV  106 (180)
T ss_dssp             EEESSS----EEEE-EEEEEEECCC
T ss_pred             EEEcCC----eEEE-EEEEEEECCC
Confidence            998763    2333 5688887763

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.15  E-value=1.9e-10  Score=84.90  Aligned_cols=83  Identities=20%  Similarity=0.228  Sum_probs=61.9

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT  104 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~lt  104 (129)
                      .... .+.+|+++.|.|.+.+.++  .+.+.|++|+..+..         ...++.|.|.+++.+|+| .|+|.|.|...
T Consensus        95 ~~~~-~v~~G~~v~L~C~~~~~~p--~~~v~W~k~g~~~~~---------~~~~~~L~i~~v~~~D~G-~Y~C~a~n~~~  161 (204)
T 3sgj_C           95 APRW-VFKEEDPIHLRCHSWKNTA--LHKVTYLQNGKGRKY---------FHHNSDFYIPKATLKDSG-SYFCRGLVGSK  161 (204)
T ss_dssp             CSCS-EEETTCCEEEEEEEGGGCC--CEEEEEEETTEEEEE---------EEECCCEEESSCCGGGCE-EEEEEEEETTE
T ss_pred             CCce-eEeCCCcEEEEEEecCCCC--CceEEEEECCcEeec---------ccCCceEEECcCCcccCE-EEEEEEEeCCC
Confidence            3344 7889999999999966543  367999999966632         123689999999999997 99999999642


Q ss_pred             CeEEecccceEEEEecCCC
Q psy5694         105 GESQASVFQTRLSITGKLK  123 (129)
Q Consensus       105 ge~k~S~~~~~L~V~ep~~  123 (129)
                      +  ..|. ...|.|.++..
T Consensus       162 ~--~~s~-~~~l~V~~~~~  177 (204)
T 3sgj_C          162 N--VSSE-TVQITITQGLA  177 (204)
T ss_dssp             E--EECC-CEEEEEEC---
T ss_pred             c--eecC-cEEEEEeCcCC
Confidence            3  3455 77999987654

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.15  E-value=1.5e-10  Score=82.58  Aligned_cols=90  Identities=19%  Similarity=0.210  Sum_probs=63.9

Q ss_pred             eEEEeCCeEEEEeeCCCCCCCc-eeEeEEeecc----------------eeeec-ccCCCceEEEcc------CccEEEe
Q psy5694          29 HNVILGNTAVLRCQIPSYMSEY-IIVTSWIQDD----------------VNIYL-NTDTGGKYVVLS------SGDLYVF   84 (129)
Q Consensus        29 ~~V~~GntAvL~C~vp~~~~~~-v~v~sW~~d~----------------~~i~~-~~~~~~ry~vlp------sG~L~I~   84 (129)
                      +.|.+|+++.|.|.+.+.+... .+.+.|.+++                ..+.. .....+|+.+..      ++.|.|.
T Consensus        10 v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~   89 (214)
T 3jz7_A           10 IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVT   89 (214)
T ss_dssp             EEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCEEEC
T ss_pred             EEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccEEEc
Confidence            3899999999999998765321 3578998843                22210 011256777764      6789999


Q ss_pred             ccCCCCCCcceEEEeecccCCeEEecccceEEEEecCCC
Q psy5694          85 NATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGKLK  123 (129)
Q Consensus        85 nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~~  123 (129)
                      +++.+|+| .|+|.+.|.. |..  +. ...|.|..+..
T Consensus        90 ~v~~~D~G-~Y~C~~~~~~-~~~--~~-~~~l~V~~~p~  123 (214)
T 3jz7_A           90 NLQLSDIG-TYQCKVKKAP-GVA--NK-KFLLTVLVKPS  123 (214)
T ss_dssp             SCCGGGCE-EEEEEEEETT-EEE--EE-EEEEEEECCCB
T ss_pred             cCChhhCe-EEEEEEEeCC-Ccc--cc-EEEEEEEcCCC
Confidence            99999997 9999999986 442  33 56888876643

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.15  E-value=5.9e-11  Score=84.66  Aligned_cols=94  Identities=15%  Similarity=0.173  Sum_probs=67.1

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeec--------ccCCCceEEEccCccEEEeccCCCCCC
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYL--------NTDTGGKYVVLSSGDLYVFNATPNDGY   92 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~--------~~~~~~ry~vlpsG~L~I~nv~~~D~g   92 (129)
                      +...+.+. .+.+|+++.|.|.+.+.+   .+.+.|.+++..+..        .....+|+.+.. +.|.|.+++.+|+|
T Consensus         7 i~~~~~~~-~v~~G~~v~L~C~~~~~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~L~i~~~~~~d~G   81 (209)
T 1nbq_A            7 VHSSEPEV-RIPENNPVKLSCAYSGFS---SPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP-TGITFKSVTREDTG   81 (209)
T ss_dssp             EECSCSBC-CEETTCCCEEECEEESCS---SEEEEEEEEETTEEEESEETTEECTTTTTTCEEET-TEEECSCCCTTSCS
T ss_pred             EEcCCCce-EEEcCCCEEEEEEEeCCC---CcEEEEEEcCCceeEEEEecCccCccccCceEeec-cEEEEeeCCHHHCc
Confidence            33445555 889999999999998765   367999998844210        012356776664 99999999999998


Q ss_pred             cceEEEeecccCCeEEecccceEEEEecCC
Q psy5694          93 KSYRCRTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        93 ~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                       .|+|.+.|.. |....+. ...|.|..++
T Consensus        82 -~Y~C~~~~~~-g~~~~~~-~~~l~V~~~p  108 (209)
T 1nbq_A           82 -TYTCMVSEEG-GNSYGEV-KVKLIVLVPP  108 (209)
T ss_dssp             -EEEEEEEETT-SSCEECC-EEECCEEBCC
T ss_pred             -EEEEEEecCC-CCccceE-EEEEEEecCC
Confidence             9999999986 3323343 5567776544

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=99.15  E-value=3.7e-10  Score=75.55  Aligned_cols=88  Identities=19%  Similarity=0.281  Sum_probs=62.4

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc----cCCCceEEEcc---CccEEEeccCCCC
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN----TDTGGKYVVLS---SGDLYVFNATPND   90 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~----~~~~~ry~vlp---sG~L~I~nv~~~D   90 (129)
                      .+.+. .|.+|.+|.|.|.+.+.+.   +.+.|++++     ..| ...    ....+||.+..   ++.|.|.|++.+|
T Consensus         7 ~p~~~-~~~~G~~v~L~C~~~~~~~---~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   82 (108)
T 1jhl_L            7 SPSYL-VASPGETITINCRASKSIS---KSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPED   82 (108)
T ss_dssp             ECSEE-EECTTSCEEEEEEESSCCT---TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTC
T ss_pred             cCCee-EEcCCCCEEEEeEECCCCC---ceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEecCCEEEEEECCCCHHH
Confidence            34555 8899999999999987653   468999854     112 110    01247888764   3479999999999


Q ss_pred             CCcceEEEeecccCCeEEecccceEEEEe
Q psy5694          91 GYKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        91 ~g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      +| .|.|.+.|..  ...... ..+|.|+
T Consensus        83 sG-~Y~C~~~n~~--~~~fg~-gt~L~V~  107 (108)
T 1jhl_L           83 FA-MYICQQHNEY--PWTFGG-GTKLEIK  107 (108)
T ss_dssp             CS-EEEEEECSSS--SCEECC-CEEEEEC
T ss_pred             CE-EEEEEEccCC--ccEECC-CEEEEEE
Confidence            98 9999999973  333343 6688875

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.15  E-value=2.6e-11  Score=87.72  Aligned_cols=83  Identities=20%  Similarity=0.205  Sum_probs=61.2

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEe
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQA  109 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~  109 (129)
                      .|.+|+++.|.|.+.+.+.    .+.|++|+..+...  ...+.....++.|.|.+|+.+|+| .|+|.|.|..+|....
T Consensus        15 ~v~~G~~v~L~C~~~~~~~----~~~W~k~g~~~~~~--~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~a~n~~~g~~~~   87 (198)
T 1ugn_A           15 VITQGSPVTLRCQGGQETQ----EYRLYREKKTAPWI--TRIPQELVKKGQFPIPSITWEHTG-RYRCYYGSDTAGRSES   87 (198)
T ss_dssp             EEETTCCEEEEEECCTTCC----CEEEEESSSCCHHH--HTSCHHHHTTTEEEESSCCGGGCE-EEEEEEEETTTEECCC
T ss_pred             cccCCCcEEEEEEecCCCc----EEEEEECCcccccc--ccccccCCcccEEEECCCCHHHCe-EEEEEEECCCCCcccC
Confidence            6889999999999987764    38999998665321  111122345789999999999997 9999999986332223


Q ss_pred             cccceEEEEec
Q psy5694         110 SVFQTRLSITG  120 (129)
Q Consensus       110 S~~~~~L~V~e  120 (129)
                      |. ...|.|.+
T Consensus        88 s~-~~~l~V~~   97 (198)
T 1ugn_A           88 SD-PLELVVTG   97 (198)
T ss_dssp             CC-CEEEEEEC
T ss_pred             Cc-cEEEEEcc
Confidence            44 67888886

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.15  E-value=1e-10  Score=82.96  Aligned_cols=89  Identities=19%  Similarity=0.256  Sum_probs=64.5

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEc-cC--ccEEEeccCCCCCCcceE
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL-SS--GDLYVFNATPNDGYKSYR   96 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl-ps--G~L~I~nv~~~D~g~~Y~   96 (129)
                      .|...+.+. .+.+|.++.|.|.+.+.+.   +.+.|++++..|...  ...++.+. .+  ..|.|.+++.+|+| .|+
T Consensus         7 ~~~~~~~~~-~v~~G~~v~l~C~~~~~p~---~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~   79 (194)
T 2a38_A            7 TFTQPLQSV-VVLEGSTATFEAHISGFPV---PEVSWFRDGQVISTS--TLPGVQISFSDGRAKLTIPAVTKANSG-RYS   79 (194)
T ss_dssp             EEEECCCCE-EEETTSCEEEEEEEEEESC---CEEEEEESSSBCCTT--TSTTCEEEEETTEEEEEESSCCGGGCE-EEE
T ss_pred             eEEccCCce-EEECCCEEEEEEEEEecCC---CEEEEEECCEEcccc--cCCceEEEeCCCEEEEEECCCCcccCE-EEE
Confidence            355556666 8999999999999976653   469999999777542  12244442 33  37999999999997 999


Q ss_pred             EEeecccCCeEEecccceEEEEe
Q psy5694          97 CRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        97 C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      |.+.|.. |....   ...|.|.
T Consensus        80 C~~~n~~-~~~~~---~~~l~v~   98 (194)
T 2a38_A           80 LKATNGS-GQATS---TAELLVK   98 (194)
T ss_dssp             EEEEETT-EEEEE---EEEEEEE
T ss_pred             EEEEcCC-ceEeE---EEEEEEc
Confidence            9999986 44322   3466665

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.15  E-value=1e-10  Score=85.86  Aligned_cols=92  Identities=15%  Similarity=0.168  Sum_probs=62.1

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--ee---e-ec----ccCCCceEEEcc---CccEEEeccCCCC
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VN---I-YL----NTDTGGKYVVLS---SGDLYVFNATPND   90 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~~---i-~~----~~~~~~ry~vlp---sG~L~I~nv~~~D   90 (129)
                      ++... .|.+|++|.|.|.+.+.+++. ..++|++++  ..   + +.    .....+||.+..   ++.|.|.+++.+|
T Consensus        25 ~p~~~-~v~~G~~v~L~C~~~~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D  102 (234)
T 2j6e_L           25 QPPSA-SGTPGQRVTISCSGSSSNIGS-NYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSED  102 (234)
T ss_dssp             CCSCC-CBCTTCEEEEEEECCTTTTTT-SCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTT
T ss_pred             CCCcE-EeeCCCcEEEEEEecCCCCCC-CeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHH
Confidence            35655 899999999999997654331 148999863  11   1 10    011246887764   3479999999999


Q ss_pred             CCcceEEEeecccCCeEEecccceEEEEe
Q psy5694          91 GYKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        91 ~g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      +| .|+|.+.|..+.+...+. ...|.|.
T Consensus       103 ~G-~Y~C~~~~~~~~~~~~~~-~~~l~V~  129 (234)
T 2j6e_L          103 EA-DYYCATWDDSLSAVIFGG-GTKLTVL  129 (234)
T ss_dssp             CS-EEEEEEEETTTTEEEECC-CBCCCBC
T ss_pred             CE-EEEEEEEcCCcceeEecC-CEEEEEe
Confidence            97 999999998642223333 4466664

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.14  E-value=4.7e-11  Score=86.32  Aligned_cols=82  Identities=12%  Similarity=-0.006  Sum_probs=58.9

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEe
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQA  109 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~  109 (129)
                      .|.+|++++|.|.+++.+    ..+.|.|++..+...  ...+.....++.|.|.+|+.+|+| .|+|.+.|.. |....
T Consensus        14 ~v~~G~~v~L~C~~~~~~----~~~~w~k~g~~~~~~--~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~~~~~~-~~~~~   85 (188)
T 1oll_A           14 MVPKEKQVTICCQGNYGA----VEYQLHFEGSLFAVD--RPKPPERINKVKFYIPDMNSRMAG-QYSCIYRVGE-LWSEP   85 (188)
T ss_dssp             EEETTCCEEEEEECCTTC----CEEEEEETTEEEEEE--CCSSCTTCCEEEEEESSCCGGGCE-EEEEEEEETT-EECCC
T ss_pred             cCCCCCCEEEEEecCCCC----CEEEEEECCCccccc--ccccCCCcceeEEEeCcCCcccCe-EEEEEecCCC-CCCCC
Confidence            578999999999987533    468999998665321  111112235688999999999997 9999999864 33233


Q ss_pred             cccceEEEEec
Q psy5694         110 SVFQTRLSITG  120 (129)
Q Consensus       110 S~~~~~L~V~e  120 (129)
                      |. ...|.|++
T Consensus        86 s~-~~~l~V~~   95 (188)
T 1oll_A           86 SN-LLDLVVTE   95 (188)
T ss_dssp             CC-CEEEEEES
T ss_pred             CC-ceEEEecc
Confidence            54 67888875

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.14  E-value=3.2e-11  Score=87.18  Aligned_cols=80  Identities=19%  Similarity=0.181  Sum_probs=59.0

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEE--ccCccEEEeccCCCCCCcceEEEeecccCCeE
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV--LSSGDLYVFNATPNDGYKSYRCRTVNKITGES  107 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~v--lpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~  107 (129)
                      .|.+|++++|.|.+.+.+    +.+.|++++..+..    ..+...  ..++.|.|.+++.+|+| .|+|.|.|.. |..
T Consensus        15 ~v~~G~~v~L~C~~~~~~----~~~~w~k~g~~~~~----~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~a~n~~-g~~   84 (196)
T 3p2t_A           15 VISWGNSVTIWCQGTLEA----REYRLDKEESPAPW----DRQNPLEPKNKARFSIPSMTEDYAG-RYRCYYRSPV-GWS   84 (196)
T ss_dssp             EEETTCCEEEEEECCTTC----CEEEEEETTSCSCS----EEECCCSSSSEEEEEESSCCGGGCE-EEEEEEEETT-EEB
T ss_pred             cCCCCCcEEEEeeCCCCC----CEEEEEECCCCCcc----cccccccCCceEEEEeccCCcccCc-eEEEEEeCCC-ccc
Confidence            578899999999998732    56899999865532    111111  34688999999999997 9999999987 433


Q ss_pred             EecccceEEEEec
Q psy5694         108 QASVFQTRLSITG  120 (129)
Q Consensus       108 k~S~~~~~L~V~e  120 (129)
                      ..|. ...|.|..
T Consensus        85 ~~s~-~~~l~V~~   96 (196)
T 3p2t_A           85 QPSD-PLELVMTG   96 (196)
T ss_dssp             CCCC-CEEEEEEC
T ss_pred             CCCc-cEEEEecC
Confidence            3455 66788864

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.14  E-value=3.9e-11  Score=88.87  Aligned_cols=66  Identities=23%  Similarity=0.292  Sum_probs=52.0

Q ss_pred             EeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEecc-CCCCCCcceEEEeecccCCe
Q psy5694          32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNA-TPNDGYKSYRCRTVNKITGE  106 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv-~~~D~g~~Y~C~a~N~ltge  106 (129)
                      ++|+++.|.|.  +.|.   +.+.|.+++..|...  .+++.....+|.|.|.+| +.+|+| .|+|.|.|.. |+
T Consensus       126 ~~G~~v~L~C~--g~p~---p~i~W~k~~~~l~~~--~~~~~~~~~~~~L~I~~v~~~~D~G-~Y~C~A~N~~-g~  192 (204)
T 1sy6_A          126 ISGTTVILTCP--QYPG---SEILWQHNDKNIGGD--EDDKNIGSDEDHLSLKEFSELEQSG-YYVCYPRGSK-PE  192 (204)
T ss_dssp             EETTEEEEECS--CCCS---SCEEEEETTEEESCC--TTCTTEEEETTEEEETTCCHHHHCE-EEEEEETTSC-GG
T ss_pred             ecCCcEEEEcC--CCCC---CceEEEECCEECCCc--cCCceEecCCCEEEEeeCCccccCE-EEEEEeccCC-CC
Confidence            48999999999  3442   458999999777431  234444457999999999 999997 9999999998 54

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.13  E-value=5.5e-11  Score=87.47  Aligned_cols=70  Identities=14%  Similarity=0.182  Sum_probs=53.1

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCC--------------------CceEEEccCccEEEeccCCC
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDT--------------------GGKYVVLSSGDLYVFNATPN   89 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~--------------------~~ry~vlpsG~L~I~nv~~~   89 (129)
                      .+.+|+++.|.|.+.+.+.   +.++|++++..|......                    ..+.....++.|.|.+++.+
T Consensus       147 ~v~~g~~v~L~C~~~g~p~---p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~  223 (250)
T 2fbo_J          147 QVDEGNDITMTCPCTDCAN---ANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKIT  223 (250)
T ss_dssp             ECCTTCCEEECCCEESCTT---CEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGG
T ss_pred             EecCCCcEEEEEEecCCCC---CeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcc
Confidence            6677999999999988765   479999998766321000                    12332335589999999999


Q ss_pred             CCCcceEEEeeccc
Q psy5694          90 DGYKSYRCRTVNKI  103 (129)
Q Consensus        90 D~g~~Y~C~a~N~l  103 (129)
                      |+| .|+|.|.|..
T Consensus       224 D~G-~Y~C~a~N~~  236 (250)
T 2fbo_J          224 DAG-RVWCELATGQ  236 (250)
T ss_dssp             GCE-EEEEEEESSS
T ss_pred             cCE-EEEEEecCCc
Confidence            997 9999999976

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.13  E-value=9.9e-11  Score=83.56  Aligned_cols=80  Identities=13%  Similarity=0.203  Sum_probs=60.4

Q ss_pred             EEEe-CCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEE
Q psy5694          30 NVIL-GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQ  108 (129)
Q Consensus        30 ~V~~-GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k  108 (129)
                      .+.. |+++.|.|.+.+.+. ..+.+.|.+++..|..    +.++.  .++.|.|.+++.+|+| .|+|.+.|.  |.. 
T Consensus        13 ~v~~~G~~v~l~C~~~~~~~-~~~~v~W~~~~~~~~~----~~~~~--~~~~L~i~~~~~~d~G-~Y~C~~~n~--~~~-   81 (190)
T 2wv3_A           13 IIRDSLLPVTLQCNLTSSSH-TLMYSYWTKNGVELTA----TRKNA--SNMEYRINKPRAEDSG-EYHCVYHFV--SAP-   81 (190)
T ss_dssp             ECCCSSSCEEEEEEEEECSS-CEEEEEEEETTEECTT----CCBCC--SEEEEEESSCCGGGCE-EEEEEEEET--TEE-
T ss_pred             EEccCCceEEEEEEeccCCC-CceEEEEEECCEECcc----cceEe--ccEEEEEecCCcccCE-EEEEEEEeC--Ccc-
Confidence            5556 999999999987664 2467999999987742    22222  6789999999999997 999999998  553 


Q ss_pred             ecccceEEEEecCC
Q psy5694         109 ASVFQTRLSITGKL  122 (129)
Q Consensus       109 ~S~~~~~L~V~ep~  122 (129)
                       +. ...|.|..++
T Consensus        82 -~~-~~~l~V~~~p   93 (190)
T 2wv3_A           82 -KA-NATIEVKAAP   93 (190)
T ss_dssp             -EE-EEEEEEECCC
T ss_pred             -cc-cEEEEEecCC
Confidence             32 4577777543

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.13  E-value=4.5e-11  Score=87.09  Aligned_cols=85  Identities=18%  Similarity=0.088  Sum_probs=58.8

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEE-EccCccEEEeccCCCCCCcceEEEeecccCC--e
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYV-VLSSGDLYVFNATPNDGYKSYRCRTVNKITG--E  106 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~-vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltg--e  106 (129)
                      .|.+|++++|.|.+.. +   .+.+.|.||+..+.+. ....++. ...+|.|.|.+|+.+|+| .|+|.+.|...+  .
T Consensus        18 ~v~~G~~v~L~C~~~~-~---~~~~~w~k~g~~~~~~-~~~~~~~~~~~~~~l~I~~v~~~D~G-~Y~C~a~~~~~~~~~   91 (201)
T 1nkr_A           18 LVKSEETVILQCWSDV-M---FEHFLLHREGMFNDTL-RLIGEHHDGVSKANFSISRMTQDLAG-TYRCYGSVTHSPYQV   91 (201)
T ss_dssp             EEETTCCEEEEEEESS-C---CSEEEEEEESSSCEEE-EEECEEETTEEEEEEEESSCCGGGCE-EEEEEEEBTTBTTCC
T ss_pred             ccCCCCcEEEEEeccC-C---CCEEEEEECCCcCCcc-eeeeecCCCCceEEEEeccCCcccCe-EEEEeEecCCCCccc
Confidence            7889999999999863 2   3568999998655321 0011111 124688999999999997 999999875322  1


Q ss_pred             EEecccceEEEEecC
Q psy5694         107 SQASVFQTRLSITGK  121 (129)
Q Consensus       107 ~k~S~~~~~L~V~ep  121 (129)
                      ...|. ...|.|.++
T Consensus        92 ~~~s~-~~~l~V~~~  105 (201)
T 1nkr_A           92 SAPSD-PLDIVIIGL  105 (201)
T ss_dssp             CCCCC-CEEEEEECS
T ss_pred             cCCCC-CEEEEeecc
Confidence            22344 668888764

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.13  E-value=8e-11  Score=92.03  Aligned_cols=91  Identities=16%  Similarity=0.188  Sum_probs=67.8

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEee-cceeeecccCCCceEEEccCccEEEeccCCCC------CC
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQ-DDVNIYLNTDTGGKYVVLSSGDLYVFNATPND------GY   92 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~-d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D------~g   92 (129)
                      .|..++.+.+.+.+|+.+.|.|.+.+.|.   +.++|++ |+..|..   ..+.+.+..+|.|.|.+++.+|      +|
T Consensus         5 ~f~~~p~~~~~~~~G~~v~l~C~~~g~p~---p~v~W~k~~g~~~~~---~~~~~~~~~~~~L~i~~~~~~d~~~~~d~G   78 (388)
T 2v5m_A            5 VFLKEPTNRIDFSNSTGAEIECKASGNPM---PEIIWIRSDGTAVGD---VPGLRQISSDGKLVFPPFRAEDYRQEVHAQ   78 (388)
T ss_dssp             EEEECCCSEEEEETTTCEEEECEEEEESC---CEEEEEETTSCBCCC---BTTTBEECSTTEEEECCCCGGGCCHHHHEE
T ss_pred             chhhCCCceEEEEcCccEEEEEECCCCCC---CEEEEEcCCCCcccc---CCCceEEcCCceEEecccChhhccccccCc
Confidence            45666776646778999999999976663   6799999 6676643   2344556789999999999998      76


Q ss_pred             cceEEEeecccCCeEEecccceEEEEec
Q psy5694          93 KSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        93 ~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                       .|+|.|.|.. |+. .|. ...|.+..
T Consensus        79 -~Y~C~a~n~~-g~~-~s~-~~~v~v~~  102 (388)
T 2v5m_A           79 -VYACLARNQF-GSI-ISR-DVHVRAVV  102 (388)
T ss_dssp             -EEEEEEEETT-EEE-ECC-CEEEEEEC
T ss_pred             -eEEEEEEccC-CeE-Eec-ceEEEEcc
Confidence             9999999987 542 343 55666653

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.13  E-value=2.1e-10  Score=84.29  Aligned_cols=82  Identities=20%  Similarity=0.363  Sum_probs=53.9

Q ss_pred             eeE-eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecce--ee--ecc---------cCCCceEEEcc------Ccc
Q psy5694          21 YEI-NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDV--NI--YLN---------TDTGGKYVVLS------SGD   80 (129)
Q Consensus        21 y~~-~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~--~i--~~~---------~~~~~ry~vlp------sG~   80 (129)
                      |.+ .|.+.+.|..|++|+|.|.+.+.+......+.|++++.  .+  ...         ....+|...+.      ++.
T Consensus         5 f~V~~P~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~   84 (226)
T 4f80_A            5 FSVLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAA   84 (226)
T ss_dssp             CEEECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEE
T ss_pred             EEEECCCCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEE
Confidence            444 34554589999999999998544332223689998762  11  100         01123444432      457


Q ss_pred             EEEeccCCCCCCcceEEEeeccc
Q psy5694          81 LYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        81 L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      |.|.||+.+|+| .|+|+|.|..
T Consensus        85 L~I~~v~~~D~G-~Y~C~a~n~~  106 (226)
T 4f80_A           85 LRIHNVTASDSG-KYLCYFQDGD  106 (226)
T ss_dssp             EEESSCCGGGCE-EEEEEEEETT
T ss_pred             EEEeeCchHHCe-eEEEEEECCC
Confidence            999999999997 9999999975

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.13  E-value=9e-11  Score=87.39  Aligned_cols=68  Identities=13%  Similarity=0.188  Sum_probs=54.8

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCC-CCCceeEeEEeecceeeecccCCCceEEEccC---c--cEEEeccCCCCCCcceEEE
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSY-MSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS---G--DLYVFNATPNDGYKSYRCR   98 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlps---G--~L~I~nv~~~D~g~~Y~C~   98 (129)
                      ..+. .|++|+.+.|.|.+... |   .+.++|++|+..|.+    +.||.+..+   |  .|.|.+++.+|+| .|+|.
T Consensus         9 ~~~~-~v~eg~~v~l~c~~~~~~P---~p~i~W~kng~~l~~----~~~~~~~~~~~~g~~~L~I~~v~~~D~G-~Y~C~   79 (207)
T 3rbs_A            9 ELAV-EILEKGQVRFWMQAEKLSG---NAKVNYIFNEKEIFE----GPKYKMHIDRNTGIIEMFMEKLQDEDEG-TYTFQ   79 (207)
T ss_dssp             EEEE-EECGGGCEEEEEECSCCCS---CCEEEEEETTEEECS----SSSCEEEECTTTCEEEEEESCCCGGGCE-EEEEE
T ss_pred             CCce-EEEeCCeEEEEEEEecCCC---CCEEEEEECCEECcc----CCCEEEEEeCCCCEEEEEECCCChhhCE-EEEEE
Confidence            3345 89999999999999653 4   367999999988854    456666533   3  5999999999997 99999


Q ss_pred             eec
Q psy5694          99 TVN  101 (129)
Q Consensus        99 a~N  101 (129)
                      |.|
T Consensus        80 a~N   82 (207)
T 3rbs_A           80 LQD   82 (207)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            999

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=99.13  E-value=2.8e-10  Score=76.24  Aligned_cols=85  Identities=19%  Similarity=0.306  Sum_probs=61.3

Q ss_pred             eEEEeCCeEEEEeeC-CCCCCCceeEeEEeecc-eeeec---c-------cCCCceEEEc-cCccEEEeccCCCCCCcce
Q psy5694          29 HNVILGNTAVLRCQI-PSYMSEYIIVTSWIQDD-VNIYL---N-------TDTGGKYVVL-SSGDLYVFNATPNDGYKSY   95 (129)
Q Consensus        29 ~~V~~GntAvL~C~v-p~~~~~~v~v~sW~~d~-~~i~~---~-------~~~~~ry~vl-psG~L~I~nv~~~D~g~~Y   95 (129)
                      +.+.+|++|.|.|.+ ++.+   .+.+.|.++. ..|..   .       ..-.+|+.+. .++.|.|+|++.+|+| .|
T Consensus        13 v~~~~G~~v~L~C~~~~~~~---~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG-~Y   88 (110)
T 2ptt_A           13 INAYTGSNVTLKIHKDPLGP---YRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALHISNVRKEDKG-TY   88 (110)
T ss_dssp             EEEETTSCEEECSCSSCCCS---CSEEEEEESTTBEEEEEETTSCEEECSSTTTTTEEECTTTCCEEESSCCGGGCE-EE
T ss_pred             EEEecCCcEEEeCCccCCCC---cCEEEEEecCCccEEEEECCCCceeeccccCCcEEEeCCCccEEECCCCcccCe-EE
Confidence            388999999999998 4433   3568999953 32310   0       1123688876 6889999999999997 99


Q ss_pred             EEEeecccCCeEEecccceEEEEecCC
Q psy5694          96 RCRTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        96 ~C~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      .|.+.+..  +  .+. ..+|.|.+|.
T Consensus        89 ~C~v~~~~--~--~~~-~~~L~V~dpv  110 (110)
T 2ptt_A           89 YMRVLRET--E--NEL-KITLEVFDPV  110 (110)
T ss_dssp             EEEEESSS--B--CCE-EEEEEEECCC
T ss_pred             EEEEEcCC--C--cEE-EEEEEEEccC
Confidence            99998764  2  122 5688888773

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.13  E-value=1.8e-11  Score=92.58  Aligned_cols=92  Identities=18%  Similarity=0.290  Sum_probs=64.0

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeE-eEEeecceee----ecc--cCCCceEEEccCccEEEeccCCCCCCc
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIV-TSWIQDDVNI----YLN--TDTGGKYVVLSSGDLYVFNATPNDGYK   93 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v-~sW~~d~~~i----~~~--~~~~~ry~vlpsG~L~I~nv~~~D~g~   93 (129)
                      +...+.+. .+..|.++.|.|.+.+.|.   +. ++|++++..+    ...  ....+++....++.|.|.+++.+|+| 
T Consensus       191 i~~~~~~~-~v~~G~~v~l~C~~~g~p~---p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G-  265 (290)
T 2o26_X          191 VSVPETSH-LLKKGDTFTVVCTIKDVST---SVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSG-  265 (290)
T ss_dssp             EECSCSBC-CCCTTCCEEEEEEEEESST---TCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCE-
T ss_pred             cccCCCcc-eEecCCcEEEEEEEecCCc---ceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCe-
Confidence            44455566 7899999999999987664   44 8999998542    111  00112223455789999999999997 


Q ss_pred             ceEEEeecccCCeEEecccceEEEEecC
Q psy5694          94 SYRCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        94 ~Y~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      .|+|.|.|.. |..  +. .+.|.|.++
T Consensus       266 ~Y~C~a~N~~-g~~--~~-~~~l~V~~~  289 (290)
T 2o26_X          266 VFMCYANNTF-GSA--NV-TTTLKVVEK  289 (290)
T ss_dssp             EEEEEEECSS-CEE--EE-EEEECC---
T ss_pred             EEEEEEeCCC-CcE--EE-EEEEEEEeC
Confidence            9999999998 664  33 558888765

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.12  E-value=1.4e-10  Score=83.94  Aligned_cols=82  Identities=12%  Similarity=0.130  Sum_probs=61.7

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeeccc--------CCCceEEEc-cCccEEEeccCCCCCCcceEEEee
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT--------DTGGKYVVL-SSGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~--------~~~~ry~vl-psG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      .+..|.+++|.|.+.. +   .+.+.|.+++..|....        .-.+|+.+. .+|.|.|+|++.+|+| .|+|.+.
T Consensus         6 ~~~~G~~VtL~c~~~~-~---~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG-~Y~C~~~   80 (171)
T 1ccz_A            6 YGVVYGNVTFHVPSNV-P---LKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDED-EYEMESP   80 (171)
T ss_dssp             EEETTCCEEECCCCSS-C---CSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCE-EEEEECT
T ss_pred             EEEcCCCEEEcCCCCC-C---cceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCc-eEEEEEe
Confidence            8899999999999842 2   46799999885442110        123567664 7899999999999997 9999999


Q ss_pred             cccCCeEEecccceEEEEecCC
Q psy5694         101 NKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus       101 N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      |.. |    +. ...|.|.+|.
T Consensus        81 n~~-~----~~-~~~L~V~~~~   96 (171)
T 1ccz_A           81 NIT-D----TM-KFFLYVLEMV   96 (171)
T ss_dssp             TCC-S----CE-EEEEEEECCC
T ss_pred             CCC-C----cE-EEEEEEECcC
Confidence            976 4    22 5578887763

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.12  E-value=8.3e-11  Score=88.67  Aligned_cols=90  Identities=16%  Similarity=0.144  Sum_probs=62.4

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEE------ccCccEEEeccCCCCCCcc
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV------LSSGDLYVFNATPNDGYKS   94 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~v------lpsG~L~I~nv~~~D~g~~   94 (129)
                      +...+.+. .+.+|+++.|.|.+.+.|   .+.++|.+++..+...  .......      ..++.|.|.+++.+|+| .
T Consensus       184 i~~~~~~~-~v~~G~~v~L~C~~~g~p---~p~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~  256 (289)
T 3mjg_X          184 VSVNAVQT-VVRQGENITLMCIVIGNE---VVNFEWTYPRKESGRL--VEPVTDFLLDMPYHIRSILHIPSAELEDSG-T  256 (289)
T ss_dssp             CEEEESCS-EEETTSCEEEEEEEESCS---SBEEEEECTTSSSSCC--CCCEEEESCTTTTEEEEEEEESSCCSSCCE-E
T ss_pred             cEEeCCcc-eeEcCCCEEEEEEECCCC---CcceEEEcCCccCCCc--ccccccccCCcceEEEEEEEEcccChhhCc-E
Confidence            45555666 799999999999998766   3679999766332110  0111111      13478999999999997 9


Q ss_pred             eEEEeecccCCeEEecccceEEEEecC
Q psy5694          95 YRCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        95 Y~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      |+|.|.|.+ |+...+.   .|.|...
T Consensus       257 Y~C~a~N~~-G~~~~~~---~l~v~~~  279 (289)
T 3mjg_X          257 YTCNVTESV-NDHQDEK---AINITVV  279 (289)
T ss_dssp             EEEEEEETT-TTEEEEE---EEEEEEE
T ss_pred             EEEEeecCC-CCceeEE---EEEEEEE
Confidence            999999998 6644444   6776643

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.12  E-value=2.9e-10  Score=82.45  Aligned_cols=91  Identities=16%  Similarity=0.174  Sum_probs=62.6

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--eee---e-c----ccCCCceEEEccCc---cEEEeccCCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VNI---Y-L----NTDTGGKYVVLSSG---DLYVFNATPNDG   91 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~~i---~-~----~~~~~~ry~vlpsG---~L~I~nv~~~D~   91 (129)
                      +... .|.+|.+|.|.|.+.+.+.+..+.+.|++++  ..+   . .    .....+||.+..++   .|.|.+++.+|+
T Consensus         7 p~~~-~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   85 (212)
T 1q0x_L            7 ESAL-TTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDE   85 (212)
T ss_dssp             CSEE-EECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCeE-eecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCC
Confidence            5556 8999999999999977653112458999863  121   1 0    01234788876544   799999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEec
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      | .|.|.+.|.. +. ..+. ...|.|..
T Consensus        86 G-~Y~C~~~~~~-~~-~~~~-~~~l~V~~  110 (212)
T 1q0x_L           86 A-IYFCALWSNN-KL-VFGG-GTKLTVLG  110 (212)
T ss_dssp             E-EEEEEEECSS-CE-EECC-CEEEEECC
T ss_pred             E-EEEEEEecCc-hh-hcCC-CeEEEEec
Confidence            7 9999999975 32 2233 45777753

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.12  E-value=1.3e-10  Score=89.75  Aligned_cols=86  Identities=20%  Similarity=0.279  Sum_probs=65.9

Q ss_pred             EEEeCCeEEEEeeC-----CCCCCCceeEeEEeecceeeecccCCCceEEEccC-ccEEEeccCCCCCCcceEEEeeccc
Q psy5694          30 NVILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS-GDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        30 ~V~~GntAvL~C~v-----p~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlps-G~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      .+..|.++.|.|.+     .+.|   .+.++|++|+..|..   ...+|.+..+ +.|.|.+++.+|+| .|+|.|.|..
T Consensus       131 ~~~~g~~v~l~C~~~~~~~~g~p---~~~v~W~k~g~~~~~---~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a~n~~  203 (339)
T 3o4o_C          131 ILTLSTSGVLVCPDLSEFTRDKT---DVKIQWYKDSLLLDK---DNEKFLSVRGTTHLLVHDVALEDAG-YYRCVLTFAH  203 (339)
T ss_dssp             EEETTSCEEEECCSCTTTCCSSS---CCCBCCEESSCBCCT---TCSSEEECTTSSEEEESSCCGGGCE-EEEEEEECCB
T ss_pred             EEECCCCEEEEecCCcccccCCC---CceEEEecCCeeCCC---CCceeEEcCCcceEEEcccCHhhCe-EEEEEEEECC
Confidence            67899999999994     4444   357899999977743   3478888764 68999999999997 9999999998


Q ss_pred             CCeEEecccceEEEEecCC
Q psy5694         104 TGESQASVFQTRLSITGKL  122 (129)
Q Consensus       104 tge~k~S~~~~~L~V~ep~  122 (129)
                      ++.....+....|.|.++.
T Consensus       204 g~~~~~~~~~~~l~V~~~~  222 (339)
T 3o4o_C          204 EGQQYNITRSIELRIKKKK  222 (339)
T ss_dssp             TTBCCEEEEEEEEEEECCC
T ss_pred             CCeEEEEEEEEEEEEEcCC
Confidence            6543222236688887654

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.12  E-value=1.4e-10  Score=85.26  Aligned_cols=86  Identities=15%  Similarity=0.193  Sum_probs=64.4

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEee
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      +...+... .+..|.++.|.|.+.+.|.   +.++|++++..+...          .++.|.|.+++.+|.| .|+|.|.
T Consensus       121 ~~~~~~~~-~v~~G~~v~L~C~~~g~p~---~~v~W~~~~~~~~~~----------~~~~L~i~~v~~~d~G-~Y~C~a~  185 (218)
T 3k0w_A          121 ICVEPTSQ-KLMPGSTLVLQCVAVGSPI---PHYQWFKNELPLTHE----------TKKLYMVPYVDLEHQG-TYWCHVY  185 (218)
T ss_dssp             EEECCCCE-EECTTCCEEEECEEEBSSC---CEEEEEETTEECTTC----------CSSEEEESSCCGGGCE-EEEEEEE
T ss_pred             EEECCCce-eecCCCcEEEEEEecccCC---CeEEEEECCEECCCC----------CCCEEEEeecChhcCE-EEEEEEE
Confidence            44455556 8899999999999976663   569999999776431          2468999999999997 9999999


Q ss_pred             cccCCeEEecccceEEEEecCCCC
Q psy5694         101 NKITGESQASVFQTRLSITGKLKS  124 (129)
Q Consensus       101 N~ltge~k~S~~~~~L~V~ep~~~  124 (129)
                      |.. |. ..|. ...|.|.+....
T Consensus       186 n~~-g~-~~s~-~~~l~V~~~~~~  206 (218)
T 3k0w_A          186 NDR-DS-QDSK-KVEIIIDELNNL  206 (218)
T ss_dssp             CSS-CE-EECC-CEEEEECC----
T ss_pred             cCC-CC-ceee-eEEEEEeCCccC
Confidence            987 54 2455 778999875443

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.12  E-value=9.5e-11  Score=98.15  Aligned_cols=84  Identities=17%  Similarity=0.347  Sum_probs=64.5

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc---CccEEEeccCCCCCCcceEEEee
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS---SGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp---sG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      ..++. .|..|+++.|.|.+.+.|.   +.++|++|+..|..    +.+|.+.-   .+.|.|.+++.+|+| .|+|.|.
T Consensus        11 ~~~~~-~v~~G~~v~L~C~~~g~p~---~~v~W~k~g~~l~~----~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~   81 (570)
T 3b43_A           11 PLEHV-EAAIGEPITLQCKVDGTPE---IRIAWYKEHTKLRS----APAYKMQFKNNVASLVINKVDHSDVG-EYTCKAE   81 (570)
T ss_dssp             CCCCE-EECTTSCEEEEEEEESSSS---CEEEEECSSSBCCC----CSSEEEECCTTEEEEEESSCCGGGCE-EEEEEEE
T ss_pred             ECCce-EEcCCCEEEEEEEEccCCC---CEEEEEECCEEccC----CCCEEEEEECCEEEEEEccCChhhCE-EEEEEEE
Confidence            34445 8899999999999987763   67999999977743    45666542   357999999999997 9999999


Q ss_pred             cccCCeEEecccceEEEEec
Q psy5694         101 NKITGESQASVFQTRLSITG  120 (129)
Q Consensus       101 N~ltge~k~S~~~~~L~V~e  120 (129)
                      |.. |+...   .+.|.|.+
T Consensus        82 N~~-g~~~~---~~~l~v~~   97 (570)
T 3b43_A           82 NSV-GAVAS---SAVLVIKE   97 (570)
T ss_dssp             ETT-EEEEE---EEEEEECC
T ss_pred             eCC-ceEEE---EEEEEECC
Confidence            987 65332   34677764

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.12  E-value=1.6e-10  Score=84.85  Aligned_cols=96  Identities=13%  Similarity=0.090  Sum_probs=62.4

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEE-------EccCccEEEeccCCCCCCc
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYV-------VLSSGDLYVFNATPNDGYK   93 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~-------vlpsG~L~I~nv~~~D~g~   93 (129)
                      +...+...+.+.+|+++.|.|.+.+.+.. ...+.|.+++..+........+..       ....+.|.|.+++.+|+| 
T Consensus       107 ~~~~~~~~~~v~~G~~v~L~C~~~g~p~~-~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-  184 (213)
T 2x1w_L          107 VVLSPSHGIELSVGEKLVLNCTARTELNV-GIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQG-  184 (213)
T ss_dssp             EEEESCSCEEEETTCCEEEEEEEEECTTB-CCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCE-
T ss_pred             eEEcCCCCeEEcCCCCEEEEEEEECCCCC-ceEEEEEecCCccceEEEeccccccccCccceeeeEEEEECCCCcccCE-
Confidence            34444444478999999999999765432 235899998854311000000000       111357999999999997 


Q ss_pred             ceEEEeecccCCeEEecccceEEEEecCC
Q psy5694          94 SYRCRTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        94 ~Y~C~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      .|.|.|.|.. |..  +. .+.|.|.++.
T Consensus       185 ~Y~C~a~N~~-g~~--~~-~~~l~V~~~p  209 (213)
T 2x1w_L          185 LYTCAASSGL-MTK--KN-STFVRVHEDP  209 (213)
T ss_dssp             EEEEEEECSS-CEE--EE-EEEEEEEC--
T ss_pred             EEEEEEecCC-CcE--EE-EEEEEEeccc
Confidence            9999999998 664  33 5689988764

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.12  E-value=3e-10  Score=82.26  Aligned_cols=89  Identities=17%  Similarity=0.287  Sum_probs=62.1

Q ss_pred             eEEEeCCeEEEEeeCCCCCCC--ceeEeEEeecceeeecc-----------cCCCceEEEccC------ccEEEeccCCC
Q psy5694          29 HNVILGNTAVLRCQIPSYMSE--YIIVTSWIQDDVNIYLN-----------TDTGGKYVVLSS------GDLYVFNATPN   89 (129)
Q Consensus        29 ~~V~~GntAvL~C~vp~~~~~--~v~v~sW~~d~~~i~~~-----------~~~~~ry~vlps------G~L~I~nv~~~   89 (129)
                      +.|..|++|.|.|.+.+.+..  ....+.|++++..+...           ....+|+.+..+      +.|.|.|++.+
T Consensus        11 v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~   90 (222)
T 3sbw_C           11 YVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQ   90 (222)
T ss_dssp             EEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSCCGG
T ss_pred             EEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCcccc
Confidence            378899999999998655421  13468999976333110           011367777655      48999999999


Q ss_pred             CCCcceEEEeecccCCeEEecccceEEEEecCCC
Q psy5694          90 DGYKSYRCRTVNKITGESQASVFQTRLSITGKLK  123 (129)
Q Consensus        90 D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~~  123 (129)
                      |+| .|+|.+.|  .|..  +. ...|.|..|..
T Consensus        91 D~G-~Y~C~~~~--~~~~--~~-~~~l~V~~~~~  118 (222)
T 3sbw_C           91 DAG-VYRCMISY--GGAD--YK-RITVKVNAPYN  118 (222)
T ss_dssp             GCE-EEEEEEES--SSEE--EE-EEEEEEEBCCC
T ss_pred             cCe-EEEEEEEe--CCCc--ee-EEEEEEECCCC
Confidence            997 99999999  2543  32 45888886643

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.12  E-value=2.4e-10  Score=83.45  Aligned_cols=94  Identities=19%  Similarity=0.295  Sum_probs=64.4

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--eeee----cc---------cCCCceEEEcc-----CccEEE
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VNIY----LN---------TDTGGKYVVLS-----SGDLYV   83 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~~i~----~~---------~~~~~ry~vlp-----sG~L~I   83 (129)
                      +++.. .|.+|++|.|.|.+.+.+.+ .+.+.|++++  ..+.    ..         ....+||.+..     ++.|.|
T Consensus         6 ~p~~~-~v~~G~~v~L~C~~~~~~~~-~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (219)
T 1c1e_H            6 QSGPE-LKKPGETVKISCKASGYMFT-NYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQI   83 (219)
T ss_dssp             ECCCE-EECTTCCEEEEEEEESSCGG-GSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEE
T ss_pred             CCCCe-EecCCCcEEEEEEEeCcccc-cceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEE
Confidence            34555 88999999999999765422 2578999873  2211    00         01247888864     368999


Q ss_pred             eccCCCCCCcceEEEeecccCCeE-EecccceEEEEecC
Q psy5694          84 FNATPNDGYKSYRCRTVNKITGES-QASVFQTRLSITGK  121 (129)
Q Consensus        84 ~nv~~~D~g~~Y~C~a~N~ltge~-k~S~~~~~L~V~ep  121 (129)
                      .|++.+|+| .|+|.+.|..+... ..+. ..+|.|...
T Consensus        84 ~~v~~~D~G-~Y~C~~~~~~~~~~~~~~~-~~~l~V~~~  120 (219)
T 1c1e_H           84 NNLKNEDMA-TYFCARGTTIVRAMDYWGQ-GTSLTVSSA  120 (219)
T ss_dssp             CSCCGGGCE-EEEEEEEETTTTEEEEECC-CEEEEECCC
T ss_pred             CCCCcccCE-EEEEEEeccCcccceeecC-ceEEEEecC
Confidence            999999997 99999999753221 2233 567888763

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.11  E-value=2.2e-10  Score=83.05  Aligned_cols=90  Identities=20%  Similarity=0.310  Sum_probs=62.0

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--eee---e-c----ccCCCceEEEccCc---cEEEeccCCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VNI---Y-L----NTDTGGKYVVLSSG---DLYVFNATPNDG   91 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~~i---~-~----~~~~~~ry~vlpsG---~L~I~nv~~~D~   91 (129)
                      +... .|.+|++|.|.|.+.+.+.   +.+.|+++.  ..+   . .    .....+||.+..++   .|.|.+++.+|+
T Consensus         6 p~~~-~v~~G~~v~L~C~~~~~~~---~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   81 (212)
T 1nfd_E            6 PSSA-SVTVGETVKITCSGDQLPK---NFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDE   81 (212)
T ss_dssp             CSEE-EEETTSCCCEEEEETTGGG---SCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGC
T ss_pred             CCeE-EEeCCCcEEEEEecCCCCC---CeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccC
Confidence            4555 8899999999999876653   358998853  222   1 0    01124788876443   799999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEec
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      | .|+|.+.|...+....+. ...|.|..
T Consensus        82 G-~Y~C~~~n~~~~~~~~~~-~~~l~V~~  108 (212)
T 1nfd_E           82 A-AYYCLSSYGDNNDLVFGS-GTQLTVLR  108 (212)
T ss_dssp             S-EEEEEEEETTTTEEEECC-CEEEEEEC
T ss_pred             E-EEEEEEEcccCcccccCC-ceEEEEcc
Confidence            8 999999984334433343 55777753

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.11  E-value=3.1e-10  Score=79.43  Aligned_cols=81  Identities=12%  Similarity=0.150  Sum_probs=60.7

Q ss_pred             EeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          23 INVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        23 ~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      ...... .+..|.++.|.|.+.+..+  .+.++|.+|+..+..         ...++.|.|.+++.+|.| .|+|.|.|.
T Consensus        90 ~~~~~~-~~~~g~~~~l~C~~~~~~p--~~~~~W~~~g~~~~~---------~~~~~~L~i~~v~~~d~G-~Y~C~a~n~  156 (170)
T 3ry4_A           90 LQTPHL-EFQEGETIMLRCHSWKDKP--LVKVTFFQNGKSQKF---------SHLDPTFSIPQANHSHSG-DYHCTGNIG  156 (170)
T ss_dssp             EECSCS-EECTTCCEEEEEEEGGGCC--EEEEEEEETTEEEEE---------ESSCCEEEESSCCGGGCE-EEEEEEEET
T ss_pred             ecCCCc-eeecCCeEEEEEECCCCCC--CceEEEEECCeEccc---------cCCCCeEEEEeccccCCE-EEEEEEEeC
Confidence            344445 7889999999999965433  367999999866632         123678999999999997 999999998


Q ss_pred             cCCeEEecccceEEEEe
Q psy5694         103 ITGESQASVFQTRLSIT  119 (129)
Q Consensus       103 ltge~k~S~~~~~L~V~  119 (129)
                      . |. ..|. ...|.|+
T Consensus       157 ~-g~-~~s~-~~~l~V~  170 (170)
T 3ry4_A          157 Y-TL-FSSK-PVTITVQ  170 (170)
T ss_dssp             T-EE-EECC-CEEEEEC
T ss_pred             c-Cc-cccc-cEEEEEC
Confidence            7 54 3455 6677664

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.11  E-value=1.8e-10  Score=84.63  Aligned_cols=92  Identities=13%  Similarity=0.082  Sum_probs=59.5

Q ss_pred             eeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-eeeecccCCCceEEEccCccE---EEeccCCCCCCcc
Q psy5694          19 QKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYVVLSSGDL---YVFNATPNDGYKS   94 (129)
Q Consensus        19 q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-~~i~~~~~~~~ry~vlpsG~L---~I~nv~~~D~g~~   94 (129)
                      .......... .+..|..+.|.|.+.+..+  .+.++|++++ ..+..   ...++....+|.+   .|.+++.+|.| .
T Consensus       119 ~~~~~~~~~~-~~~~g~~v~l~c~~~g~~P--~p~i~W~k~~~~~~~~---~~~~~~~~~~g~~~v~s~l~v~~~d~G-~  191 (226)
T 4f80_A          119 ALGSDLHVDV-KGYKDGGIHLECRSTGWYP--QPQIQWSNNKGENIPT---VEAPVVADGVGLYAVAASVIMRGSSGE-G  191 (226)
T ss_dssp             BCCCCCEEEE-EEEETTEEEEEEEEEEEBS--CCEEEEECTTSCBCCC---EECCCEECTTSCEEEEEEEEECC-----C
T ss_pred             cceeccccee-eeccCCceeeEEEeccCCC--CCEEEEEECCceEcCC---CceEEEECCCCcEEEEEEEEechhcCc-E
Confidence            3344444455 7899999999999877422  3679999976 44421   2233444456653   35578999997 9


Q ss_pred             eEEEeecccCCeEEecccceEEEEecC
Q psy5694          95 YRCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        95 Y~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      |+|+|.|.++++ ..   .+.|.|.+|
T Consensus       192 YtC~a~N~~g~~-~~---~~~v~v~ep  214 (226)
T 4f80_A          192 VSCTIRSSLLGL-EK---TASISIADP  214 (226)
T ss_dssp             EEEEEEETTTTE-EE---EEEECCCTT
T ss_pred             EEEEEEeCCCCe-EE---EEEEEECCC
Confidence            999999999665 22   347888876

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.11  E-value=1.2e-10  Score=83.88  Aligned_cols=73  Identities=25%  Similarity=0.174  Sum_probs=56.8

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEe
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQA  109 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~  109 (129)
                      .|.+|+++.|.|.+.+ +   .+.+.|++++..           ....++.|.|.+++.+|+| .|+|.|.|.. |....
T Consensus        18 ~v~~G~~v~L~C~~~~-~---~~~~~W~k~g~~-----------~~~~~~~L~i~~v~~~D~G-~Y~C~a~n~~-g~~~~   80 (184)
T 2gi7_A           18 LVPLEKPVTLRCQGPP-G---VDLYRLEKLSSS-----------RYQDQAVLFIPAMKRSLAG-RYRCSYQNGS-LWSLP   80 (184)
T ss_dssp             EEETTCCEEEEEECST-T---CSEEEEEETTTC-----------CEESSSEEEESSCCGGGCE-EEEEEEEETT-EEBCC
T ss_pred             cccCCCcEEEEEeCCC-C---CCEEEEEECCcc-----------ccCcccEEEECcCChhhCc-eEEEEEEcCC-CccCC
Confidence            6889999999999876 3   256899998722           2346789999999999997 9999999975 43333


Q ss_pred             cccceEEEEec
Q psy5694         110 SVFQTRLSITG  120 (129)
Q Consensus       110 S~~~~~L~V~e  120 (129)
                      |. ...|.|.+
T Consensus        81 s~-~~~l~V~~   90 (184)
T 2gi7_A           81 SD-QLELVATG   90 (184)
T ss_dssp             CC-CEEEEEES
T ss_pred             CC-CEEEEecC
Confidence            44 66788754

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.11  E-value=3.7e-10  Score=81.78  Aligned_cols=88  Identities=22%  Similarity=0.309  Sum_probs=61.2

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc-----eee-ecc--------cCCCceEEEcc---CccEEEeccCCCCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD-----VNI-YLN--------TDTGGKYVVLS---SGDLYVFNATPNDG   91 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~-----~~i-~~~--------~~~~~ry~vlp---sG~L~I~nv~~~D~   91 (129)
                      .|.+|.+|.|.|.+.+. +   .+.+.|++++     ..+ ...        ....+||.+..   ++.|.|.||+.+|+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   87 (218)
T 3s96_B           11 SFSLGASAKLTCTLNSQHS---TYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPEDE   87 (218)
T ss_dssp             EEETTSCEEEEEEECGGGT---TCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EECCCCcEEEEEECCCCCC---CcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCCcccC
Confidence            88999999999999876 4   3568999832     111 110        01235887654   45599999999999


Q ss_pred             CcceEEEeecccCC--eEEecccceEEEEecCC
Q psy5694          92 YKSYRCRTVNKITG--ESQASVFQTRLSITGKL  122 (129)
Q Consensus        92 g~~Y~C~a~N~ltg--e~k~S~~~~~L~V~ep~  122 (129)
                      | .|+|.+.|..++  ....+. ...|.|....
T Consensus        88 G-~Y~C~~~~~~~~~~~~~~~~-~~~l~V~~~~  118 (218)
T 3s96_B           88 A-IYICGVGDTIKEQFVYVFGG-GTKVTVLGQP  118 (218)
T ss_dssp             E-EEEEEEEEEETTEEEEEECC-CEEEEEESCC
T ss_pred             E-EEEEEEecCCCCceeEEEcC-cEEEEEecCC
Confidence            7 999999998631  223343 6688888543

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.10  E-value=3.4e-10  Score=83.43  Aligned_cols=92  Identities=17%  Similarity=0.262  Sum_probs=65.8

Q ss_pred             eEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc----cCCCceEEEcc-----CccEEEecc
Q psy5694          22 EINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN----TDTGGKYVVLS-----SGDLYVFNA   86 (129)
Q Consensus        22 ~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~----~~~~~ry~vlp-----sG~L~I~nv   86 (129)
                      ...+.+. .+.+|++|.|.|.+.+.+.   +.+.|++++     ..| ...    ...++||.+..     ++.|.|.++
T Consensus       131 ~~~p~~~-~v~~G~~v~L~C~~~~~p~---~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v  206 (238)
T 2p1y_A          131 RQSPQSL-TVWEGETAILNCSYENSAF---DYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADS  206 (238)
T ss_dssp             EEECSEE-EEETTSCEEEEEECCCTTC---CEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTC
T ss_pred             EccCceE-EEeCCCeEEEEEEEecCCC---CcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCC
Confidence            3345555 7999999999999987764   579999964     111 100    01246887752     367999999


Q ss_pred             CCCCCCcceEEEeecccCCeEEecccceEEEEe
Q psy5694          87 TPNDGYKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        87 ~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      +.+|+| .|.|.|.|...+...... ..+|+|.
T Consensus       207 ~~~D~G-~Y~C~a~n~~~~~~~~g~-gt~l~V~  237 (238)
T 2p1y_A          207 QPGDSA-TYFCAAIDTNAYKVIFGK-GTHLHVL  237 (238)
T ss_dssp             CGGGCE-EEEEEEEETTTTEEEECC-CEEEEEE
T ss_pred             CHHHCE-EEEEEEeeCCCCeEEECC-CEEEEEe
Confidence            999997 999999998645544444 6688874

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.10  E-value=2.6e-10  Score=82.57  Aligned_cols=91  Identities=20%  Similarity=0.305  Sum_probs=65.2

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccE----EEeccCCCCCCcceE
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDL----YVFNATPNDGYKSYR   96 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L----~I~nv~~~D~g~~Y~   96 (129)
                      +...+.+. .+.+|+++.|.|.+.+.+.   +.+.|++++..|........++ ...+|.|    .|.+++.+|+| .|+
T Consensus        12 i~~~p~~~-~v~~G~~v~L~C~~~g~p~---~~v~W~~~g~~~~~~~~~~~~~-~~~~~~~~~~l~i~~v~~~d~G-~Y~   85 (217)
T 2vr9_A           12 IIEHPTDL-VVKKNEPATLNCKVEGKPE---PTIEWFKDGEPVSTNEKKSHRV-QFKDGALFFYRTMQGKKEQDGG-EYW   85 (217)
T ss_dssp             EEECCCCE-EECTTSCEEECCEEECSSC---CEEEEEETTEECCCSSSSSSEE-ECTTSCEEESSCCBSSSCBCCE-EEE
T ss_pred             EecCCCce-EEeCCCcEEEEEEcCCCCC---CeEEEEECCcCccCCCccceeE-EecCCceEEEEEeccCCcccCc-eEE
Confidence            44455666 8999999999999977653   5699999997775432222333 4567776    58999999997 999


Q ss_pred             EEeecccCCeEEecccceEEEEec
Q psy5694          97 CRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        97 C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      |.+.|.. |.. .+. ...|.|..
T Consensus        86 C~~~n~~-g~~-~~~-~~~l~v~~  106 (217)
T 2vr9_A           86 CVAKNRV-GQA-VSR-HASLQIAV  106 (217)
T ss_dssp             EEEEETT-EEE-ECC-CEEEEECE
T ss_pred             EEEecCC-Ccc-ccc-cceEEEEE
Confidence            9999986 542 232 45666654

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.10  E-value=1.1e-10  Score=84.00  Aligned_cols=91  Identities=11%  Similarity=0.177  Sum_probs=62.0

Q ss_pred             eEEEeCCeEEEEeeCCCCCC-CceeEeEEeecceeeeccc--------CCCceEEE--ccCccEEEeccCCCCCCcceEE
Q psy5694          29 HNVILGNTAVLRCQIPSYMS-EYIIVTSWIQDDVNIYLNT--------DTGGKYVV--LSSGDLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        29 ~~V~~GntAvL~C~vp~~~~-~~v~v~sW~~d~~~i~~~~--------~~~~ry~v--lpsG~L~I~nv~~~D~g~~Y~C   97 (129)
                      +.|..|++|.|.|.+..... ...+.+.|.+++..|....        .-.+|..+  ..++.|.|.||+.+|+| .|+|
T Consensus         4 v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G-~Y~C   82 (201)
T 1dr9_A            4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEG-TYEC   82 (201)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCE-EEEE
T ss_pred             EEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCe-EEEE
Confidence            37899999999999964321 1346799999986552110        01234433  34678999999999997 9999


Q ss_pred             EeecccCCeEEe--cccceEEEEecC
Q psy5694          98 RTVNKITGESQA--SVFQTRLSITGK  121 (129)
Q Consensus        98 ~a~N~ltge~k~--S~~~~~L~V~ep  121 (129)
                      .+.|..++..+.  +. ...|.|.++
T Consensus        83 ~~~~~~g~~~~~~~~~-~~~l~V~~~  107 (201)
T 1dr9_A           83 VVLKYEKDAFKREHLA-EVTLSVKAD  107 (201)
T ss_dssp             EEEECCTTSCEEEEEE-EEEEEEECC
T ss_pred             EEEcCCCCcccccccc-EEEEEEcCC
Confidence            999987443221  22 457777765

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.10  E-value=1.1e-10  Score=87.39  Aligned_cols=85  Identities=14%  Similarity=0.000  Sum_probs=60.8

Q ss_pred             eeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCC-
Q psy5694          27 YEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITG-  105 (129)
Q Consensus        27 ~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltg-  105 (129)
                      +. .|.+|+++.|.|...+.+.   +.+.|.||+..+..     .+.....+|.|.|.+|+.+|+| .|+|.|.|.... 
T Consensus       114 ~~-~v~~G~~v~L~C~~~~~~~---~~~~W~k~g~~~~~-----~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~n~~~~~  183 (218)
T 1uct_A          114 GL-VLMPGENISLTCSSAHIPF---DRFSLAKEGELSLP-----QHQSGEHPANFSLGPVDLNVSG-IYRCYGWYNRSPY  183 (218)
T ss_dssp             CS-EECTTCCCEEEEECSSSCC---SEEEEEETTCSSCC-----SEEECSSSEEEECCSCCGGGCE-EEEEEEECTTSTT
T ss_pred             CC-ccCCCCCEEEEEeCCCCCC---CEEEEEECCCcccc-----cccCCCccCEEEEccCCcccCE-EEEEEEEcCCCCC
Confidence            45 7889999999996544332   56899999866532     2333446899999999999997 999999986421 


Q ss_pred             -eEEecccceEEEEecCC
Q psy5694         106 -ESQASVFQTRLSITGKL  122 (129)
Q Consensus       106 -e~k~S~~~~~L~V~ep~  122 (129)
                       ....|+ +..|.|++..
T Consensus       184 ~~s~~S~-~~~l~V~g~~  200 (218)
T 1uct_A          184 LWSFPSN-ALELVVTDSI  200 (218)
T ss_dssp             EECCCCC-CEEEEEC---
T ss_pred             cCCCCCC-cEEEEEecCC
Confidence             223455 7899998653

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=99.10  E-value=3.8e-10  Score=76.08  Aligned_cols=94  Identities=17%  Similarity=0.187  Sum_probs=59.3

Q ss_pred             eeeEEEeCCeEEEEeeCCCCC-CCceeEeEEeecce----e--ee-c---------ccCCCceEEEc-----cCccEEEe
Q psy5694          27 YEHNVILGNTAVLRCQIPSYM-SEYIIVTSWIQDDV----N--IY-L---------NTDTGGKYVVL-----SSGDLYVF   84 (129)
Q Consensus        27 ~~~~V~~GntAvL~C~vp~~~-~~~v~v~sW~~d~~----~--i~-~---------~~~~~~ry~vl-----psG~L~I~   84 (129)
                      ..+.+..|++|.|.|.+.... ......+.|.+++.    .  +. .         ...-.+|+.+.     .++.|.|+
T Consensus         7 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   86 (124)
T 1neu_A            7 REVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIH   86 (124)
T ss_dssp             SEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEEC
T ss_pred             CeEEEEeCCeEEEEeEEeCCCCCCCceEEEEEEcCCCCCceEEEEEecCCeeccccCccccCcEEEecCCcCCeEEEEEc
Confidence            334899999999999984321 11245689988652    1  21 1         01125688775     25789999


Q ss_pred             ccCCCCCCcceEEEeecccCCeEEecccceEEEEecCCC
Q psy5694          85 NATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGKLK  123 (129)
Q Consensus        85 nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~~  123 (129)
                      |++.+|+| .|.|.+.|...... .+. ...|.|.++++
T Consensus        87 ~v~~~D~G-~Y~C~v~~~~~~~~-~~~-~v~L~V~~~p~  122 (124)
T 1neu_A           87 NLDYSDNG-TFTCDVKNPPDIVG-KTS-QVTLYVFEKVP  122 (124)
T ss_dssp             SCCGGGCE-EEEEEEEC----CC-EEE-EEEEEEEC---
T ss_pred             cCChhhCE-EEEEEEEcCCCCcC-cEe-eEEEEEecCCC
Confidence            99999997 99999998763321 232 55888887643

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.10  E-value=4.6e-10  Score=81.07  Aligned_cols=99  Identities=20%  Similarity=0.253  Sum_probs=66.3

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCC----CceeEeEEeecce------eeecc-------cCCCceEEEcc-----C
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMS----EYIIVTSWIQDDV------NIYLN-------TDTGGKYVVLS-----S   78 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~----~~v~v~sW~~d~~------~i~~~-------~~~~~ry~vlp-----s   78 (129)
                      |..+....+.|.+|++|+|.|.+.....    ...+.+.|++++.      .+...       ....+|+.+..     +
T Consensus         2 ~~~~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~   81 (214)
T 2zg1_A            2 YELQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKN   81 (214)
T ss_dssp             CEEECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTB
T ss_pred             ceeeCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCe
Confidence            4555444448999999999999864310    1246799999863      12211       12347888865     3


Q ss_pred             ccEEEeccCCCCCCcceEEEeecccCCeEEe-cccceEEEEecC
Q psy5694          79 GDLYVFNATPNDGYKSYRCRTVNKITGESQA-SVFQTRLSITGK  121 (129)
Q Consensus        79 G~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~-S~~~~~L~V~ep  121 (129)
                      +.|.|++++.+|+| .|.|.+.|.. +.... .+....|.|.++
T Consensus        82 ~sL~I~~v~~~D~G-~Y~C~~~~~~-~~~~~~~~~~~~l~V~~~  123 (214)
T 2zg1_A           82 CSLSIGDARMEDTG-SYFFRVERGR-DVKYSYQQNKLNLEVTAL  123 (214)
T ss_dssp             CCEEECSCCGGGCE-EEEEEEEETT-TEEEECCSSCEEEEEECC
T ss_pred             EEEEEccCCHhhCc-eEEEEEEcCC-CceeeecCCceEEEEecC
Confidence            47999999999997 9999999875 23211 112668888764

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=99.10  E-value=6.9e-10  Score=74.13  Aligned_cols=90  Identities=20%  Similarity=0.240  Sum_probs=58.8

Q ss_pred             eEEEeCCeEEEEeeCCCCCC-C-ceeEeEEeecce-ee--e-cc--------cCCCceEEEc-cCccEEEeccCCCCCCc
Q psy5694          29 HNVILGNTAVLRCQIPSYMS-E-YIIVTSWIQDDV-NI--Y-LN--------TDTGGKYVVL-SSGDLYVFNATPNDGYK   93 (129)
Q Consensus        29 ~~V~~GntAvL~C~vp~~~~-~-~v~v~sW~~d~~-~i--~-~~--------~~~~~ry~vl-psG~L~I~nv~~~D~g~   93 (129)
                      +.+..|++|.|.|.+.+.+. + ....+.|.+++. .+  . ..        ..-.+|..+. .++.|.|+||+.+|+| 
T Consensus         4 v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G-   82 (110)
T 1ncn_A            4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKG-   82 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCE-
T ss_pred             EEEEeCCCEEEEeEeCCCCcCCCccEEEEEEeCCCccEEEEECCcccccccCcccCCcEEEECCCEEEEEcCCChHHCE-
Confidence            37889999999999865432 1 112589999762 12  1 10        0113566654 4789999999999997 


Q ss_pred             ceEEEeecccCCeE-EecccceEEEEe
Q psy5694          94 SYRCRTVNKITGES-QASVFQTRLSIT  119 (129)
Q Consensus        94 ~Y~C~a~N~ltge~-k~S~~~~~L~V~  119 (129)
                      .|.|.+.|...... ...-...+|.|+
T Consensus        83 ~Y~C~v~~~~~~~~~~~~~~~~~L~V~  109 (110)
T 1ncn_A           83 LYQCIIHHKKPTGMIRIHQMNSELSVL  109 (110)
T ss_dssp             EEEEEEEEECSSSEEEEEEEEEEEEEE
T ss_pred             EEEEEEEcCCCCceEEEEEEEEEEEEe
Confidence            99999998764331 122224466664

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.09  E-value=2.6e-10  Score=85.37  Aligned_cols=86  Identities=15%  Similarity=0.179  Sum_probs=60.7

Q ss_pred             EeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEE-EccCc--cEEEeccCCCCCCcceEEEe
Q psy5694          23 INVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYV-VLSSG--DLYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        23 ~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~-vlpsG--~L~I~nv~~~D~g~~Y~C~a   99 (129)
                      ..+. . .|.+|++++|.|.+.+ +   .+.+.|.||+..+...   ..++. ...++  .|.|.+|+.+|+| .|+|.|
T Consensus        14 ~~p~-~-~v~~G~~vtL~C~~~~-~---~~~~~W~k~g~~~~~~---~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a   83 (218)
T 1uct_A           14 AKSS-P-VIPLDGSVKIQCQAIR-E---AYLTQLMIIKNSTYRE---IGRRLKFWNETDPEFVIDHMDANKAG-RYQCQY   83 (218)
T ss_dssp             ESSC-S-EEETTCCEEEEECCCT-T---CSEEEEEEEETTEEEE---CSEECC----CCCEEEECSCCGGGCE-EEEEEE
T ss_pred             ecCC-C-ccCCCCCEEEEEEcCC-C---CCEEEEEECCCccccc---ccccCCCCcceeeEEEEcccccccCE-EEEEEE
Confidence            3444 4 7889999999999975 2   3568999998555321   11221 12345  8999999999997 999999


Q ss_pred             ecccCCeEEecccceEEEEec
Q psy5694         100 VNKITGESQASVFQTRLSITG  120 (129)
Q Consensus       100 ~N~ltge~k~S~~~~~L~V~e  120 (129)
                      .|.. |....|. ...|.|.+
T Consensus        84 ~n~~-~~~~~s~-~~~l~V~~  102 (218)
T 1uct_A           84 RIGH-YRFRYSD-TLELVVTG  102 (218)
T ss_dssp             EETT-TEEEECC-CEEEEEEC
T ss_pred             EcCC-CceeecC-CEEEEEcC
Confidence            9975 4445565 77888875

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.09  E-value=1.3e-10  Score=90.80  Aligned_cols=90  Identities=18%  Similarity=0.177  Sum_probs=66.7

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCC-CCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEE
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPS-YMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCR   98 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~-~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~   98 (129)
                      .|...+.+. .+.+|+++.|.|.+.+ .+   .+.++|++|+..|...  .........+|.|.|.+++.+|+| .|+|.
T Consensus         8 ~~~~~p~~~-~v~~G~~v~l~C~~~~~~p---~~~v~W~k~g~~~~~~--~~~~~~~~~~~~L~i~~~~~~D~G-~Y~C~   80 (395)
T 1bih_A            8 VLKDQPAEV-LFRENNPTVLECIIEGNDQ---GVKYSWKKDGKSYNWQ--EHNAALRKDEGSLVFLRPQASDEG-HYQCF   80 (395)
T ss_dssp             EECCCCSEE-EEETTSCEEECCCEESCCS---SCEEEEEESSSBCCTT--TTTEEECTTSCCEEESSCCGGGCE-EEEEE
T ss_pred             EeecCCCce-EEeCCCEEEEEEEEecCCC---CceEEEEECCcCcccc--cceEEEecCCceEEEecCCCCCCc-EEEEE
Confidence            355566776 8999999999999987 34   3679999999777542  112333457899999999999997 99999


Q ss_pred             eecccCCeEEecccceEEEEe
Q psy5694          99 TVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        99 a~N~ltge~k~S~~~~~L~V~  119 (129)
                      |.|.. |.. .|. ...|.|.
T Consensus        81 a~n~~-g~~-~s~-~~~l~v~   98 (395)
T 1bih_A           81 AETPA-GVA-SSR-VISFRKT   98 (395)
T ss_dssp             EEETT-EEE-ECC-CEEEEEE
T ss_pred             EEeCC-CeE-EeE-EEEEEEE
Confidence            99976 552 233 4555554

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=99.09  E-value=5.1e-10  Score=78.01  Aligned_cols=86  Identities=16%  Similarity=0.336  Sum_probs=56.4

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecc--eee--ecc---------cCCCceEEEcc------CccEEEeccCCCC
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VNI--YLN---------TDTGGKYVVLS------SGDLYVFNATPND   90 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~~i--~~~---------~~~~~ry~vlp------sG~L~I~nv~~~D   90 (129)
                      .+..|++|+|+|.+.+....-...+.|++++  ..+  ...         ..-.+|..+..      +..|.|+||+.+|
T Consensus        16 ~g~vG~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~R~~~~~~~~~~g~~sL~I~~v~~~D   95 (125)
T 4gos_A           16 AGNIGEDGILSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQVIVGNASLRLKNVQLTD   95 (125)
T ss_dssp             EEETTSCEEEEEEECCCSCGGGCEEEEEETTCSSBSEEEETTEECCTTBCGGGTTCEEECTTTGGGTBCCEEESSCCGGG
T ss_pred             EEeCCCCEEEEEEEcCCcccCcEEEEEEEeccCceEEEEEeecccccccCccccceEEEecCCccCCeEEEEECCCChHH
Confidence            6788999999999854332222458999865  111  100         01135666643      2369999999999


Q ss_pred             CCcceEEEeecccCCeEEecccceEEEEec
Q psy5694          91 GYKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        91 ~g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      +| .|+|++.|.. |.  .+. ...|.|-.
T Consensus        96 ~G-~Y~C~v~~~~-g~--~~~-~v~LkVG~  120 (125)
T 4gos_A           96 AG-TYKCYIITSK-GK--GNA-NLEYKTGH  120 (125)
T ss_dssp             CE-EEEEEEEETT-EE--EEE-EEEEEEEC
T ss_pred             CE-EEEEEEEeCC-Ce--EEE-EEEEEECC
Confidence            97 9999999975 43  233 44666643

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.09  E-value=3.7e-10  Score=84.48  Aligned_cols=95  Identities=18%  Similarity=0.190  Sum_probs=65.5

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eeeec-c----cCCCceEEEccCc---cEEEeccCCCC
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYL-N----TDTGGKYVVLSSG---DLYVFNATPND   90 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i~~-~----~~~~~ry~vlpsG---~L~I~nv~~~D   90 (129)
                      ++... .|.+|++|+|.|.+.+.... .+.+.|++++     ..|.. .    ....+||.+..++   .|.|++++.+|
T Consensus         8 ~p~~~-~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   85 (256)
T 3ux9_B            8 QPPSV-SGAPGQRVTISCSGSSSNIG-SNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSED   85 (256)
T ss_dssp             CCSEE-EECTTCCEEEEEECCTTTTT-TSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGG
T ss_pred             cCCcE-EEcCCCcEEEEEecCCCCCC-CceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhh
Confidence            34455 88999999999999765211 2568999852     12211 0    1134688886554   69999999999


Q ss_pred             CCcceEEEeecccCCeEEecccceEEEEecCC
Q psy5694          91 GYKSYRCRTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        91 ~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      +| .|.|.+.|..++....+. ...|.|.++.
T Consensus        86 sG-~Y~C~~~~~~~~~~~~~~-~~~l~V~~~~  115 (256)
T 3ux9_B           86 EA-DYYCQVRDNNENEWVFGG-GTKLTVLGSG  115 (256)
T ss_dssp             CE-EEEEEEEETTTTEEEECC-CEEEEEC---
T ss_pred             CE-EEEEEEEECCCCceEECC-CEEEEEECCC
Confidence            97 999999997655555555 6788888765

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.09  E-value=3.5e-10  Score=82.68  Aligned_cols=91  Identities=12%  Similarity=0.221  Sum_probs=63.0

Q ss_pred             eEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eeeecc-----cCCCceEEEc---cCccEEEeccCC
Q psy5694          22 EINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYLN-----TDTGGKYVVL---SSGDLYVFNATP   88 (129)
Q Consensus        22 ~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i~~~-----~~~~~ry~vl---psG~L~I~nv~~   88 (129)
                      ...+.+. .|.+|++|.|.|.+.+.+   .+.+.|++++     ..+...     ...++||.+.   .++.|.|.|++.
T Consensus        28 ~~~p~~~-~v~~G~~v~L~C~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  103 (237)
T 3sob_L           28 TQSPSSL-SASVGDRVTITCRASQDV---STAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP  103 (237)
T ss_dssp             EEECSEE-EEETTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             EeCCCeE-EEeCCCcEEEEEecCCCC---CceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCCh
Confidence            3335556 899999999999998764   3568998843     111110     1235788876   355699999999


Q ss_pred             CCCCcceEEEeecccCCeEEecccceEEEEec
Q psy5694          89 NDGYKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      +|+| .|+|.+.|.. +. ..+. ...|.|..
T Consensus       104 ~D~G-~Y~C~~~~~~-~~-~~~~-~~~l~V~~  131 (237)
T 3sob_L          104 EDFA-TYYCQQSYTT-PP-TFGQ-GTKVEIKR  131 (237)
T ss_dssp             GGCE-EEEEEECSSS-SC-EECC-CEEEEEEC
T ss_pred             hhCe-EEEEeeccCC-ce-EEcC-cEEEEEec
Confidence            9997 9999999875 32 2233 45777754

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.09  E-value=1.4e-10  Score=88.44  Aligned_cols=82  Identities=20%  Similarity=0.250  Sum_probs=60.0

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccC-CCceEEEcc----------CccEEEeccCCCC-CCcceEE
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTD-TGGKYVVLS----------SGDLYVFNATPND-GYKSYRC   97 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~-~~~ry~vlp----------sG~L~I~nv~~~D-~g~~Y~C   97 (129)
                      .+..|+++.|.|.+.+.|.   +.+.|.+|+..|..... ..++|....          .+.|.|.+++.+| +| .|+|
T Consensus       220 ~~~~g~~v~l~C~~~g~P~---p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G-~Y~C  295 (315)
T 1itb_B          220 EVDLGSQIQLICNVTGQLS---DIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKH-PFTC  295 (315)
T ss_dssp             ECCSSSCEEEEEEEEECTT---SEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTS-CEEE
T ss_pred             EEeCCCcEEEEEEEecCCC---CeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCC-ceEE
Confidence            6889999999999987765   46899999987754210 012333332          2489999999999 97 9999


Q ss_pred             EeecccCCeEEecccceEEEEe
Q psy5694          98 RTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        98 ~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      .|.|.+ |+...   .+.|.|+
T Consensus       296 ~a~N~~-G~~~~---~~~l~v~  313 (315)
T 1itb_B          296 FAKNTH-GIDAA---YIQLIYP  313 (315)
T ss_dssp             EEECTT-CCEEE---EEEEECC
T ss_pred             EEecCC-CceeE---EEEEEec
Confidence            999998 66433   3466654

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=99.09  E-value=1.8e-10  Score=78.37  Aligned_cols=83  Identities=17%  Similarity=0.191  Sum_probs=57.4

Q ss_pred             EEEeCCeEEEEeeCCCCCCC--ceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeE
Q psy5694          30 NVILGNTAVLRCQIPSYMSE--YIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGES  107 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~--~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~  107 (129)
                      .|.+|+.++|.|.....+..  ......|.+|+..+..         ...++.|.|.+|+.+|+| .|+|.+.|......
T Consensus        18 ~v~~G~~VtL~C~~~~~~~~~~~~~~~~w~k~g~~l~~---------~~~~~~l~i~~v~~~dsG-~Y~C~~~~~~~~~~   87 (108)
T 4hwn_A           18 EPQAGSPMTLSCQTKLPLQRSAARLLFSFYKDGRIVQS---------RGLSSEFQIPTASEDHSG-SYWCEAATEDNQVW   87 (108)
T ss_dssp             SCBTTCCEEEEEEC---------CCEEEEEETTEEEEE---------EESCCEEEESSCCGGGCE-EEEEEEECTTSSSE
T ss_pred             cCCCCCcEEEEEcccCCCCCcCcceEEEEEECCcCccC---------CCcccEEEeCccCcccCe-EEEEEEEeCCCcee
Confidence            36789999999998754321  1113799999866631         124688999999999997 99999999764344


Q ss_pred             EecccceEEEEecCCC
Q psy5694         108 QASVFQTRLSITGKLK  123 (129)
Q Consensus       108 k~S~~~~~L~V~ep~~  123 (129)
                      +.|+ +..|.|+.+..
T Consensus        88 ~~S~-~l~L~V~g~~~  102 (108)
T 4hwn_A           88 KQSP-QLEIRVQGASA  102 (108)
T ss_dssp             EECC-CEEECCBC---
T ss_pred             ccCC-CEEEEEEecch
Confidence            5676 88999987644

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.09  E-value=2.9e-10  Score=81.21  Aligned_cols=82  Identities=18%  Similarity=0.195  Sum_probs=62.6

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCcee-EeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEe
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYII-VTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~-v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a   99 (129)
                      +...+.+. .+..|+.+.|.|.+.+.|.   + .++|.+++..|...    .++  ..++.|.|.+++  |+| .|+|.|
T Consensus       109 ~~~~~~~~-~~~~g~~~~l~C~~~g~p~---p~~v~W~~~~~~~~~~----~~~--~~~~~L~i~~~~--d~G-~Y~C~a  175 (195)
T 2c5d_C          109 FLEEPEDR-TVAANTPFNLSCQAQGPPE---PVDLLWLQDAVPLATA----PGH--GPQRSLHVPGLN--KTS-SFSCEA  175 (195)
T ss_dssp             EEECCCCE-EECTTCCEEEEEEEECSSC---CCEEEEEESSCBSSSS----TTS--SCCEEEEECCCS--SCE-EEEEEE
T ss_pred             EEcCCCcE-EEcCCCEEEEEeECCCCCC---CCEEEEEECCEeccCC----CCc--CCCCeEEEcccc--cCc-eEEEEE
Confidence            44455555 8899999999999988764   4 68999999777432    222  678899999998  776 999999


Q ss_pred             ecccCCeEEecccceEEEE
Q psy5694         100 VNKITGESQASVFQTRLSI  118 (129)
Q Consensus       100 ~N~ltge~k~S~~~~~L~V  118 (129)
                      .|.+ |+. .|. .+.|.|
T Consensus       176 ~N~~-g~~-~s~-~~~l~V  191 (195)
T 2c5d_C          176 HNAK-GVT-TSR-TATITV  191 (195)
T ss_dssp             EETT-EEE-ECC-CEEEEE
T ss_pred             EcCC-Cce-EEE-EEEEEE
Confidence            9998 653 233 568888

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.08  E-value=3.2e-10  Score=87.08  Aligned_cols=100  Identities=16%  Similarity=0.165  Sum_probs=67.3

Q ss_pred             eeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e---ee-ecc---------cCCCceEEEcc-----C
Q psy5694          19 QKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NI-YLN---------TDTGGKYVVLS-----S   78 (129)
Q Consensus        19 q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~---~i-~~~---------~~~~~ry~vlp-----s   78 (129)
                      +..-.++... .|.+|++|.|.|.+.+.+.. .+.+.|.+++  .   .| ...         ....+||.+..     +
T Consensus        27 ~~~~~~p~~~-~v~~G~~v~L~C~~~g~~~~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~  104 (282)
T 1qok_A           27 QVKLQQSGAE-LVRSGTSVKLSCTASGFNIK-DSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNT  104 (282)
T ss_dssp             CCEEEECCCE-EEETTCCEEEEEEEESSCGG-GSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTE
T ss_pred             eEEEECCCCE-EEeCCCeEEEEEeccCCCCC-CceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCe
Confidence            4445566766 99999999999998765411 2568999863  1   11 100         11247888764     2


Q ss_pred             ccEEEeccCCCCCCcceEEEeecccC--CeEEecccceEEEEecCC
Q psy5694          79 GDLYVFNATPNDGYKSYRCRTVNKIT--GESQASVFQTRLSITGKL  122 (129)
Q Consensus        79 G~L~I~nv~~~D~g~~Y~C~a~N~lt--ge~k~S~~~~~L~V~ep~  122 (129)
                      +.|.|.+++.+|+| .|.|.+.|..+  .....+. ...|.|..+.
T Consensus       105 ~sL~I~~v~~~DsG-~Y~C~~~n~~g~~~~~~~~~-~~~L~V~~~~  148 (282)
T 1qok_A          105 AYLQLSSLTSEDTA-VYYCNEGTPTGPYYFDYWGQ-GTTVTVSSGG  148 (282)
T ss_dssp             EEEEECSCCGGGCE-EEEEEEECSSSSCCCEEECC-CEEEEEEC--
T ss_pred             EEEEECcCChhhCE-EEEEEeccCCCccceeeeCC-CEEEEEecCC
Confidence            57999999999997 99999999863  1222333 5588887653

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.08  E-value=7.8e-10  Score=78.66  Aligned_cols=78  Identities=9%  Similarity=0.083  Sum_probs=60.8

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT  104 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~lt  104 (129)
                      +.+. .+..|+++.|.|.+.+.|   .+.+.|++++..+           ...++.|.|.+++.+|+| .|+|.|.|.. 
T Consensus       104 ~~~~-~v~~g~~~~l~C~~~~~p---~~~v~W~~~~~~~-----------~~~~~~L~i~~v~~~d~G-~Y~C~a~n~~-  166 (184)
T 2ny1_B          104 NSDT-HLLQGQSLTLTLESPPGS---SPSVQCRSPRGKN-----------IQGGKTLSVSQLELQDSG-TWTCTVLQNQ-  166 (184)
T ss_dssp             SSCS-EEETTCCEEEEEECCTTC---CCEEEEECTTSCE-----------EEESSEEEESSCCGGGCE-EEEEEEEETT-
T ss_pred             CCCc-eeecCCCEEEEEEcCCCC---CCEEEEEeCCCcc-----------ccCceEEEEecCCcCCCe-EEEEEEEECC-
Confidence            4455 789999999999998875   4679999986332           235789999999999997 9999999975 


Q ss_pred             CeEEecccceEEEEecCC
Q psy5694         105 GESQASVFQTRLSITGKL  122 (129)
Q Consensus       105 ge~k~S~~~~~L~V~ep~  122 (129)
                      |.  .+. ...|.|...+
T Consensus       167 ~~--~~~-~~~l~V~~~p  181 (184)
T 2ny1_B          167 KK--VEF-KIDIVVLAFQ  181 (184)
T ss_dssp             EE--EEE-EEEEEEECCC
T ss_pred             ce--EEE-EEEEEEEecC
Confidence            33  233 5588887654

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.08  E-value=4.1e-10  Score=85.74  Aligned_cols=76  Identities=18%  Similarity=0.319  Sum_probs=53.9

Q ss_pred             eEEEeCCeEEEEeeCCCCCCCceeEeEEeeccee----ee--c-------ccCCCceEEEc----cCccEEEeccCCCCC
Q psy5694          29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVN----IY--L-------NTDTGGKYVVL----SSGDLYVFNATPNDG   91 (129)
Q Consensus        29 ~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~----i~--~-------~~~~~~ry~vl----psG~L~I~nv~~~D~   91 (129)
                      +.|.+|++|.|.|.+....+  .+.++|+|++..    +.  .       .....+|+.+.    .++.|.|.|++.+|+
T Consensus         9 vtv~~G~~v~L~C~v~~~~~--~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~   86 (308)
T 4fom_A            9 VTAVWGKNVSLKCLIEVNET--ITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDS   86 (308)
T ss_dssp             CEEETTSCEEECCBCCCSSC--EEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGC
T ss_pred             eEEEcCCcEEEEEEecCCCC--CcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHC
Confidence            38899999999999875433  467899986521    10  0       01123555543    356799999999999


Q ss_pred             CcceEEEeecccCCeE
Q psy5694          92 YKSYRCRTVNKITGES  107 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~  107 (129)
                      | .|+|+|.|...|..
T Consensus        87 G-~Y~C~a~n~~~~~~  101 (308)
T 4fom_A           87 G-KYICKAVTFPLGNA  101 (308)
T ss_dssp             E-EEEEEEEETTTEEE
T ss_pred             E-EEEEEEeeCCCcce
Confidence            7 99999999765553

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.08  E-value=2.2e-10  Score=86.04  Aligned_cols=89  Identities=13%  Similarity=0.154  Sum_probs=68.6

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-eeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEe
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a   99 (129)
                      +...+.+. .+.+|.++.|.|.+.+ + ...+.++|.+++ ..+.    .+.++.+.+++.|.|.+++.+|+| .|+|.|
T Consensus        92 ~~~~~~~~-~v~~g~~v~l~C~~~~-~-~~~~~v~W~~~~~~~~~----~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a  163 (292)
T 4dkd_C           92 WNVLAQEV-VVFEDQDALLPCLLTD-P-VLEAGVSLVRVRGRPLM----RHTNYSFSPWHGFTIHRAKFIQSQ-DYQCSA  163 (292)
T ss_dssp             EEESCSEE-EEETTSCEECCEEESS-G-GGGSSEEEEEGGGCCCC----SSCCEECCSSSCCEETTCCGGGCS-EEEEEE
T ss_pred             ccccCCeE-EEcCCCcEEEeeeCCC-C-CcceeEEEEecCCCccc----cCCcccccCCceEEECCCCHHHCe-EEEEEE
Confidence            45555666 8999999999999976 2 222568999985 5552    457888888999999999999998 999999


Q ss_pred             ecccCCeEEecccceEEEEec
Q psy5694         100 VNKITGESQASVFQTRLSITG  120 (129)
Q Consensus       100 ~N~ltge~k~S~~~~~L~V~e  120 (129)
                      .|.. |. ..+. ...|.|.+
T Consensus       164 ~n~~-~~-~~s~-~~~l~V~~  181 (292)
T 4dkd_C          164 LMGG-RK-VMSI-SIRLKVQK  181 (292)
T ss_dssp             CSTT-SC-EECC-CEEEEEEC
T ss_pred             EeCC-Cc-eeEE-EEEEEEeC
Confidence            9875 44 3344 66888886

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.08  E-value=6.3e-10  Score=84.02  Aligned_cols=87  Identities=15%  Similarity=0.070  Sum_probs=67.4

Q ss_pred             EeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEE-eecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeec
Q psy5694          23 INVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSW-IQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVN  101 (129)
Q Consensus        23 ~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW-~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N  101 (129)
                      ....+. .+.+|.++.|.|.+.+ |+  .+.++| .+|+..|.    .+.+|.+.+++.|.|.+++.+|+|..|+|.|.|
T Consensus        96 ~~~~~~-~~~~g~~v~l~C~~~~-p~--~~~v~W~~~~g~~l~----~~~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n  167 (290)
T 2o26_X           96 LVGLPL-FGKEDSDALVRCPLTD-PQ--VSQYSLIECDGKSLP----TDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQR  167 (290)
T ss_dssp             CCCCCE-EEETTSCEEECCCBSC-CS--CEEEEEEETTSCCCC----TTCEEEEETTTEEEEESCCGGGTTCEEEEEEEE
T ss_pred             ccccce-EEecCCeEEEeCcCCC-CC--CceEEEEeCCCcCCC----CCCceeeCCCCCEEEecccHHHCCCEEEEEEEE
Confidence            344555 8889999999999984 43  378999 56777763    358898999999999999999995499999999


Q ss_pred             ccCCeEEecccceEEEEec
Q psy5694         102 KITGESQASVFQTRLSITG  120 (129)
Q Consensus       102 ~ltge~k~S~~~~~L~V~e  120 (129)
                      .  +....|. ...|.|..
T Consensus       168 ~--~~~~~s~-~~~l~V~~  183 (290)
T 2o26_X          168 D--GTWLHSD-KFTLKVRE  183 (290)
T ss_dssp             T--TEEEECC-CEEEEEEC
T ss_pred             C--CceEEeE-EEEEEEEe
Confidence            7  3434554 56777763

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.07  E-value=4.4e-10  Score=87.80  Aligned_cols=80  Identities=16%  Similarity=0.228  Sum_probs=63.1

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEe
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQA  109 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~  109 (129)
                      .+..|.++.|.|.+.+.|+   +.++|++++..+..    +.+.....++.|.|.+++.+|+| .|+|.|.|.. |..  
T Consensus       233 ~~~~G~~v~l~C~~~g~p~---~~v~W~~~~~~~~~----~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~n~~-g~~--  301 (404)
T 3p3y_A          233 MVLRGMDLLLECIASGVPT---PDIAWYKKGGDLPS----DKAKFENFNKALRITNVSEEDSG-EYFCLASNKM-GSI--  301 (404)
T ss_dssp             EEETTSCEEEECCBCCSSC---CEEEEEETTBCCCT----TTEEEEGGGTEEEESSCCGGGCE-EEEEEEECSS-CEE--
T ss_pred             eEecCCCEEEEEEECCCCC---CcEEEEECCEECCC----CcccccccCceEEEccCCHhHCE-EEEEEEEeCC-CcE--
Confidence            6889999999999988764   57999999977642    33444556889999999999997 9999999998 553  


Q ss_pred             cccceEEEEecC
Q psy5694         110 SVFQTRLSITGK  121 (129)
Q Consensus       110 S~~~~~L~V~ep  121 (129)
                      +. ...|.|.++
T Consensus       302 ~~-~~~l~V~~~  312 (404)
T 3p3y_A          302 RH-TISVRVKAA  312 (404)
T ss_dssp             EE-EEEEEEEEE
T ss_pred             EE-EEEEEEeCC
Confidence            32 457777654

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.07  E-value=3.4e-10  Score=83.17  Aligned_cols=84  Identities=21%  Similarity=0.276  Sum_probs=66.4

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEe
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a   99 (129)
                      .+...+++. .+.+|+++.|.|.+.+.+.   +.+.|++++..+...          .++.|.|.+++.+|+| .|+|.+
T Consensus        20 ~i~~~p~~~-~v~~G~~v~L~C~~~~~p~---~~v~W~~~~~~~~~~----------~~~~L~i~~v~~~d~G-~Y~C~~   84 (218)
T 3k0w_A           20 KITVNPESK-AVLAGQFVKLCCRATGHPF---VQYQWFKMNKEIPNG----------NTSELIFNAVHVKDAG-FYVCRV   84 (218)
T ss_dssp             CEEECCCCE-EEETTSBEEEECEETTTTS---SEEEEEETTEECTTC----------CSSEEEETTCCGGGCE-EEEEEE
T ss_pred             EEEECCCCe-EEeCCCcEEEEeeecCCCC---CEEEEEECCEECCCC----------CCCEEEEccCChhhCe-EeEEEE
Confidence            466777777 9999999999999987663   578999998776321          3578999999999997 999999


Q ss_pred             ecccCCeEEecccceEEEEecC
Q psy5694         100 VNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus       100 ~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      .|..+..  .+. ...|.|..+
T Consensus        85 ~n~~~~~--~s~-~~~l~V~~~  103 (218)
T 3k0w_A           85 NNNFTFE--FSQ-WSQLDVCDI  103 (218)
T ss_dssp             ECTTCCE--ECC-CEEEEEECC
T ss_pred             EcCCCCc--eee-EEEEEEEcc
Confidence            9987433  243 568888765

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.07  E-value=5.4e-10  Score=83.76  Aligned_cols=90  Identities=19%  Similarity=0.266  Sum_probs=68.8

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEee-cceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEe
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQ-DDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~-d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a   99 (129)
                      +...+... .+..|.++.|.|.+.+.+..  ..++|.+ ++..+.    .+.++.+.++|.|.|.+++.+|+| .|+|.+
T Consensus        92 ~~~~~~~~-~v~~g~~v~L~C~~~~~~~~--~~v~W~~~~~~~~~----~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a  163 (289)
T 3ejj_X           92 WNLLAQEV-TVVEGQEAVLPCLITDPALK--DSVSLMREGGRQVL----RKTVYFFSPWRGFIIRKAKVLDSN-TYVCKT  163 (289)
T ss_dssp             EEESCSEE-EEETTSCEEECEEESCGGGG--GSEEEEEGGGEECC----TTCCEEEETTTEEEESSCCGGGCE-EEEEEE
T ss_pred             eecccceE-EEecCCceEeEEEccCCCcc--eEEEEEecCCeecC----CCccEEECCCCCEEEeecccccCE-EEEEEE
Confidence            56666666 89999999999999875431  2389986 456653    457899999999999999999997 999999


Q ss_pred             ecccCCeEEecccceEEEEecC
Q psy5694         100 VNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus       100 ~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      .|.  +....+. ...|.|.+.
T Consensus       164 ~~~--~~~~~~~-~~~l~V~~~  182 (289)
T 3ejj_X          164 MVN--GRESTST-GIWLKVNRV  182 (289)
T ss_dssp             EET--TEEEECC-CEEEEEESS
T ss_pred             EeC--CCccccc-cEEEEEEEC
Confidence            954  2333454 668888753

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens}

Probab=99.07  E-value=7.8e-10  Score=76.54  Aligned_cols=89  Identities=19%  Similarity=0.293  Sum_probs=62.9

Q ss_pred             eEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-eeeec---------ccCCCceEEEc-cCccEEEeccCCCCCCcceEE
Q psy5694          29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYL---------NTDTGGKYVVL-SSGDLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        29 ~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-~~i~~---------~~~~~~ry~vl-psG~L~I~nv~~~D~g~~Y~C   97 (129)
                      +.|.+|.+|+|.|....  ......+.|.+.. ..|..         ...-.+|+.+. ++|.|.|+|++.+|+| .|.|
T Consensus        14 v~~~~G~~VtL~c~~~~--~~~~~~i~W~~~~~~~i~~~~~~~~~~~~~~f~~R~~l~~~~~sL~I~nv~~~DsG-~Y~c   90 (121)
T 2edo_A           14 MTVVSGSNVTLNISESL--PENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNS-TYIM   90 (121)
T ss_dssp             CEEETTSCEEECCSSCC--CSSEEEEEEEEETTEEEEEECSSCEEECSCTTTTTCEECTTTCCEEESSCCGGGCS-EEEE
T ss_pred             EEEEeCCCEEEeCCCCC--CCceeEEEEEcCCCCeEEEEECcCCeEeChhcCCcEEEeCCCceEEEeCCCHHHCe-EEEE
Confidence            38899999999999732  1224678999875 23311         01123577777 7999999999999998 9999


Q ss_pred             EeecccCCeEEecccceEEEEecCCC
Q psy5694          98 RTVNKITGESQASVFQTRLSITGKLK  123 (129)
Q Consensus        98 ~a~N~ltge~k~S~~~~~L~V~ep~~  123 (129)
                      .+.|.- +.. .+. ...|.|.++.+
T Consensus        91 ~v~~~~-~~~-~~~-~~~L~V~~~~~  113 (121)
T 2edo_A           91 RVLKKT-GNE-QEW-KIKLQVLDPVP  113 (121)
T ss_dssp             EEEETT-TEE-EEC-CEECEEECCSC
T ss_pred             EEEcCC-CcE-EEE-EEEEEEECCCC
Confidence            998764 332 333 55888887643

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.07  E-value=6.3e-10  Score=79.61  Aligned_cols=94  Identities=20%  Similarity=0.316  Sum_probs=66.7

Q ss_pred             eeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeeccc-CCCceEEEccCccEEEe-----ccCCCCCC
Q psy5694          19 QKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT-DTGGKYVVLSSGDLYVF-----NATPNDGY   92 (129)
Q Consensus        19 q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~-~~~~ry~vlpsG~L~I~-----nv~~~D~g   92 (129)
                      ..|...+++. .+.+|+++.|.|.+.+.+.   +.+.|++++..+.... ....+.....+|.|.|.     +++.+|+|
T Consensus        10 p~i~~~p~~~-~v~~G~~v~l~C~~~~~p~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   85 (212)
T 2v9r_A           10 PRIVEHPSDL-IVSKGEPATLNCKAEGRPT---PTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEG   85 (212)
T ss_dssp             EEEEECCCCE-EECTTCCEEECCEEEEESC---CEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCE
T ss_pred             cceecCCCce-EEeCCCcEEEEEEcCCCCC---CEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCe
Confidence            3455566666 8999999999999976553   4789999997774321 11234556778877665     56899997


Q ss_pred             cceEEEeecccCCeEEecccceEEEEec
Q psy5694          93 KSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        93 ~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                       .|+|.+.|.. |.. .+. ...|.|..
T Consensus        86 -~Y~C~~~n~~-g~~-~~~-~~~l~V~~  109 (212)
T 2v9r_A           86 -VYVCVARNYL-GEA-VSH-DASLEVAI  109 (212)
T ss_dssp             -EEEEEEEETT-EEE-ECC-CEEEEECE
T ss_pred             -EEEEEEECCC-Cce-eec-ceEEEEEe
Confidence             9999999986 442 233 55777764

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.07  E-value=1.5e-10  Score=90.54  Aligned_cols=91  Identities=19%  Similarity=0.305  Sum_probs=68.9

Q ss_pred             eeeeEeeeeeeEE---EeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCC-CCCCcc
Q psy5694          19 QKYEINVNYEHNV---ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATP-NDGYKS   94 (129)
Q Consensus        19 q~y~~~v~~~~~V---~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~-~D~g~~   94 (129)
                      ..|..++.+. .+   ..|+++.|.|.+.+.|+   +.+.|++|+..|...  .+.||.+ .+|.|.|.++.. +|+| .
T Consensus         5 P~~~~~p~~~-~~~~~~~g~~v~l~C~~~g~p~---~~v~W~k~g~~~~~~--~~~~~~~-~~~~L~i~~~~~~~D~G-~   76 (382)
T 1cs6_A            5 PVFEEQPAHT-LFPEGSAEEKVTLTCRARANPP---ATYRWKMNGTELKMG--PDSRYRL-VAGDLVISNPVKAKDAG-S   76 (382)
T ss_dssp             EEEEECCCCE-EEETTCSCCEEEECCEEEEESC---CEEEEEETTEECCCS--TTSSEEE-ETTEEEEESCCHHHHCE-E
T ss_pred             CEEEECCCcE-EEecCCCCCcEEEEEEecCCCC---CEEEEEECCEECCcC--CCccEEe-eCCeEEEecccccccCE-E
Confidence            3466667766 44   68999999999976653   579999999877532  3567765 589999999997 9997 9


Q ss_pred             eEEEeecccCCeEEecccceEEEEec
Q psy5694          95 YRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        95 Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      |+|+|.|.. |.. .|. .+.|.|..
T Consensus        77 Y~C~a~n~~-g~~-~s~-~~~l~v~~   99 (382)
T 1cs6_A           77 YQCVATNAR-GTV-VSR-EASLRFGF   99 (382)
T ss_dssp             EEEEEEETT-EEE-ECC-CEEEEEEE
T ss_pred             EEEEEEcCC-cEE-Eec-ceEEEeec
Confidence            999999986 542 343 56777763

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.07  E-value=5.3e-11  Score=93.75  Aligned_cols=82  Identities=10%  Similarity=0.056  Sum_probs=61.1

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEE--------ccCccEEEeccCCCCCCcceEEEeec
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV--------LSSGDLYVFNATPNDGYKSYRCRTVN  101 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~v--------lpsG~L~I~nv~~~D~g~~Y~C~a~N  101 (129)
                      .+..|.++.|.|.+.+.|+   +.++|.+++..|...  ...+..+        ..+|.|.|.+++.+|+| .|+|.|.|
T Consensus       257 ~~~~g~~v~l~C~~~g~P~---p~i~W~~~g~~l~~~--~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G-~Y~C~a~N  330 (347)
T 2ifg_A          257 TAVEMHHWCIPFSVDGQPA---PSLRWLFNGSVLNET--SFIFTEFLEPAANETVRHGCLRLNQPTHVNNG-NYTLLAAN  330 (347)
T ss_dssp             CCEESSSEEEEEEEEEESC---CEEEEEETTEECCCC--SSEEEEECCCCTTCCCEEEEEEESSCCGGGCE-EEEEEEEE
T ss_pred             cCccCceEEEEEEeeecCC---CcEEEEeCCEECCCC--cceeeEEEeecCCCcccceEEEECCCCcccCc-eEEEEEec
Confidence            5678999999999988864   578999999877431  1111111        23678999999999997 99999999


Q ss_pred             ccCCeEEecccceEEEEecC
Q psy5694         102 KITGESQASVFQTRLSITGK  121 (129)
Q Consensus       102 ~ltge~k~S~~~~~L~V~ep  121 (129)
                      .+ |..  +. .+.|.|.++
T Consensus       331 ~~-G~~--~~-~~~l~V~~~  346 (347)
T 2ifg_A          331 PF-GQA--SA-SIMAAFMDN  346 (347)
T ss_dssp             TT-EEE--EE-EEEECSCCC
T ss_pred             CC-Cce--ee-EEEEEecCC
Confidence            98 653  33 447777765

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.07  E-value=1.3e-10  Score=87.16  Aligned_cols=94  Identities=13%  Similarity=0.135  Sum_probs=63.0

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCC-ceEEEccCccEEEeccCCCCCCcceEEEe
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTG-GKYVVLSSGDLYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~-~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a   99 (129)
                      +...+.+. .+..|.++.|.|.+.+..+  .+.++|.+++..|....... .......++.|.|.+++.+|+| .|+|.|
T Consensus       189 i~~~~~~~-~~~~g~~~~l~C~~~~~~p--~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a  264 (289)
T 3ejj_X          189 IKLEPSKL-VRIRGEAAQIVCSATNAEV--GFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAG-IYSCVA  264 (289)
T ss_dssp             EEEESSSE-ECCSSSCEEEEEEEEESSS--CCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCE-EEEEEE
T ss_pred             EEecCCce-EEEeCCcEEEEEEeCCCCC--ceEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCE-EEEEEE
Confidence            44445555 6678999999999976222  36799999997763210000 0111234688999999999997 999999


Q ss_pred             ecccCCeEEecccceEEEEecCC
Q psy5694         100 VNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus       100 ~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      .|.+ |+...   .+.|.+.++.
T Consensus       265 ~N~~-G~~~~---s~~L~~~~~~  283 (289)
T 3ejj_X          265 SNDV-GTRTA---TMNFQVVESH  283 (289)
T ss_dssp             ECSS-CEEEE---EEEEECC---
T ss_pred             EcCC-CCccc---cEEEEEEecc
Confidence            9998 76433   4477776554

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.06  E-value=5.6e-10  Score=82.42  Aligned_cols=80  Identities=20%  Similarity=0.303  Sum_probs=61.6

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEee
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      +...+.+. .|.+|+++.|.|.+.+.+.+  ..+.|++|+..|...           ++.|.|.+++.+|+| .|+|.+.
T Consensus        10 i~~~p~~~-~v~~G~~v~L~C~~~~~p~~--~~v~W~k~g~~l~~~-----------~~~L~i~~v~~~D~G-~Y~C~a~   74 (204)
T 3sgj_C           10 VFLEPQWY-RVLEKDSVTLKCQGAYSPED--QSTQWFHNESLISSQ-----------ASSYFIDAATVDDSG-EYRCQTQ   74 (204)
T ss_dssp             EEEESCCS-EEETTCCEEEEEECCSSSSC--CCEEEEETTEEESCC-----------SSEEEESSCCGGGCE-EEEEEET
T ss_pred             EEEcCCCe-EEECCCCEEEEEcCCCCCCC--cEEEEEECCEEcccC-----------ccEEEEecccccCCE-EEEEEeC
Confidence            34556656 89999999999999887643  238999999777421           289999999999997 9999999


Q ss_pred             cccCCeEEecccceEEEEecC
Q psy5694         101 NKITGESQASVFQTRLSITGK  121 (129)
Q Consensus       101 N~ltge~k~S~~~~~L~V~ep  121 (129)
                      |..     .|. ...|.|.++
T Consensus        75 n~~-----~s~-~~~l~V~~~   89 (204)
T 3sgj_C           75 LST-----LSD-PVQLEVHIG   89 (204)
T ss_dssp             TSB-----CCC-CEEEEEECS
T ss_pred             CCc-----ccc-cEEEEEecC
Confidence            842     233 567777754

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.06  E-value=6e-11  Score=90.42  Aligned_cols=81  Identities=17%  Similarity=0.183  Sum_probs=59.5

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEe
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQA  109 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~  109 (129)
                      .+..|.++.|.|.+.+.|++  ..+.|++++..|...      .....+..|.|.+++.+|+| .|+|.|.|.+ |+.  
T Consensus       223 ~~~~g~~v~l~C~~~g~P~p--~~v~W~k~~~~~~~~------~~~~~~~~l~i~~v~~~d~G-~Y~C~A~N~~-G~~--  290 (308)
T 4fom_A          223 WFVGRKGVNLKCNADANPPP--FKSVWSRLDGQWPDG------LLASDNTLHFVHPLTFNYSG-VYICKVTNSL-GQR--  290 (308)
T ss_dssp             EETTCCSCEEECCEEEESCE--EEEECCBSSSCCCSS------CBCSTTEEECCSCCCSCCCS-EEEEEEEETT-EEE--
T ss_pred             eeeccccEEEEEEEecCCCC--cEEEEEECCeECCCc------EEEcCCeEEEECCCChhhCE-EEEEEEEeCC-CcE--
Confidence            56678899999999877642  258999998666321      11223344678999999998 9999999998 764  


Q ss_pred             cccceEEEEecCCC
Q psy5694         110 SVFQTRLSITGKLK  123 (129)
Q Consensus       110 S~~~~~L~V~ep~~  123 (129)
                      +. .+.|.|++|+.
T Consensus       291 ~~-~~~l~V~~~P~  303 (308)
T 4fom_A          291 SD-QKVIYISDPPH  303 (308)
T ss_dssp             EE-EEECCEECCC-
T ss_pred             EE-EEEEEEEcCCC
Confidence            33 56899998764

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.06  E-value=4.1e-10  Score=81.49  Aligned_cols=88  Identities=19%  Similarity=0.208  Sum_probs=62.1

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--eee---e-----cccCCCceEEEccCc---cEEEeccCCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VNI---Y-----LNTDTGGKYVVLSSG---DLYVFNATPNDG   91 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~~i---~-----~~~~~~~ry~vlpsG---~L~I~nv~~~D~   91 (129)
                      +.+. .|.+|++|.|.|.+.+.+.   +.++|++++  ..+   .     ......+||.+..+|   .|.|.+++.+|+
T Consensus         8 p~~~-~v~~G~~v~L~C~~~~~~~---~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   83 (213)
T 3d9a_L            8 PATL-SVTPGNSVSLSCRASQSIG---NNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF   83 (213)
T ss_dssp             CSEE-EECTTCCEEEEEEESSCCT---TCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CccE-EEeCCCcEEEEEECCCCCC---CCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhC
Confidence            4445 8899999999999987763   459998853  211   0     001123788887544   799999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEec
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      | .|+|.+.|.. |. ..+. ...|.|..
T Consensus        84 G-~Y~C~~~~~~-~~-~~~~-~~~l~V~~  108 (213)
T 3d9a_L           84 G-MYFCQQSNSW-PY-TFGG-GTKLEIKR  108 (213)
T ss_dssp             E-EEEEEECSSS-SC-EECC-CEEEEECC
T ss_pred             E-EEEEeeecCC-cc-eeCC-CEEEEEec
Confidence            7 9999999986 33 2232 45777764

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.06  E-value=3.5e-10  Score=86.51  Aligned_cols=82  Identities=16%  Similarity=0.186  Sum_probs=60.2

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEe
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQA  109 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~  109 (129)
                      .|.+|+++.|.|.+...+    +.+.|.||+..+..     .+.....++.|.|.+|+.+|+| .|+|.|.|....-...
T Consensus       112 ~v~~G~~vtL~C~~~~~~----~~~~w~k~g~~~~~-----~~~~~~~~~~l~I~~v~~~d~G-~Y~C~a~n~~~~~s~~  181 (242)
T 1p6f_A          112 EVISGEKVTFYCRLDTAT----SMFLLLKEGRSSHV-----QRGYGKVQAEFPLGPVTTAHRG-TYRCFGSYNNHAWSFP  181 (242)
T ss_dssp             EEETTCEEEEEEECTTSC----SEEEEEECSSSCEE-----EEEECSSEEEEEEEECCGGGCE-EEEEEEEEETTEECCC
T ss_pred             ccCCCCcEEEEEecCCCC----CEEEEEECCCccCc-----cccCCCceEEEEeCCCccccCE-EEEEEEECCCCcccCC
Confidence            688999999999986543    36899999865532     1112335789999999999997 9999999874222234


Q ss_pred             cccceEEEEecCC
Q psy5694         110 SVFQTRLSITGKL  122 (129)
Q Consensus       110 S~~~~~L~V~ep~  122 (129)
                      |+ +..|.|+++.
T Consensus       182 S~-~~~l~V~~~~  193 (242)
T 1p6f_A          182 SE-PVKLLVTGDI  193 (242)
T ss_dssp             CC-CEEEEEEC--
T ss_pred             CC-CEEEEEeccC
Confidence            65 8899999753

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.06  E-value=3.1e-10  Score=82.35  Aligned_cols=59  Identities=19%  Similarity=0.277  Sum_probs=48.9

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEec-cCCCCCCcceEEEeecccC
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFN-ATPNDGYKSYRCRTVNKIT  104 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~n-v~~~D~g~~Y~C~a~N~lt  104 (129)
                      .+..|+++.|.|.+.+ ++    .+.|++|+..|...          .++.|.|.+ ++.+|+| .|+|+|.|..+
T Consensus        10 v~~~G~~v~L~C~~~~-~~----~i~W~k~g~~l~~~----------~~~~L~I~~~~~~~D~G-~Y~C~a~n~~g   69 (186)
T 1jbj_A           10 VSISGTSVELTCPLDS-DE----NLKWEKNGQELPQK----------HDKHLVLQDFSEVEDSG-YYVCYTPASNK   69 (186)
T ss_dssp             EEEETTEEEEECSSCC-CT----TCEEEETTEEECSC----------CCSEEEEESCCTTTSCE-EEEEECSSCCC
T ss_pred             EEeCCcEEEEEEeCCC-CC----ceEEEECCEECCCC----------CCCEEEECCCCccccCE-EEEEEEEeCCC
Confidence            3478999999999976 43    28999999877431          456899999 9999997 99999999873

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.06  E-value=6.3e-10  Score=83.19  Aligned_cols=93  Identities=13%  Similarity=0.195  Sum_probs=63.3

Q ss_pred             eeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--eee------ecc-------cCCCceEEEccCcc-----EEEec
Q psy5694          26 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VNI------YLN-------TDTGGKYVVLSSGD-----LYVFN   85 (129)
Q Consensus        26 ~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~~i------~~~-------~~~~~ry~vlpsG~-----L~I~n   85 (129)
                      ... .|.+|++|.|.|.+.+.+.+ .+.+.|++++  ..+      ...       ....+||.+..++.     |.|.+
T Consensus       142 ~~~-~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~  219 (256)
T 3ux9_B          142 GGG-LVQPGGSLRLSCAASGFTFS-SYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNS  219 (256)
T ss_dssp             CCE-EECTTCCEEEEEEEESSCGG-GSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             CCe-EEcCCCeEEEEEEEeCCccc-ccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECC
Confidence            344 68899999999999765533 3678999863  211      110       01235888875544     99999


Q ss_pred             cCCCCCCcceEEEeecccCCeEEecccceEEEEecC
Q psy5694          86 ATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        86 v~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      ++.+|+| .|+|.|.|.-.+....-....+|+|+.+
T Consensus       220 v~~~DsG-~Y~C~~~~~~~~~~~~~g~gt~l~V~~~  254 (256)
T 3ux9_B          220 LRAEDTA-VYYCARYIDFGDHMDFWGQGTLVTVSSL  254 (256)
T ss_dssp             CCGGGCE-EEEEEEEETTTTEEEEECCCEEEEECCC
T ss_pred             CChhhCE-EEEEEEEcCCCcceEEECCCeEEEEecC
Confidence            9999997 9999999963222222233668999865

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.06  E-value=1.6e-11  Score=104.05  Aligned_cols=93  Identities=15%  Similarity=0.290  Sum_probs=0.0

Q ss_pred             eeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc-CccEEEeccCCCCCCcceEE
Q psy5694          19 QKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS-SGDLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        19 q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp-sG~L~I~nv~~~D~g~~Y~C   97 (129)
                      ..+...+.+. .|..|+++.|.|.+.+.|+   +.++|++|+..|..    +.++.+.. ++.|.|.+++.+|+| .|+|
T Consensus       667 P~~~~~~~~~-~v~~g~~~~l~C~~~g~P~---p~v~W~k~g~~l~~----~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C  737 (772)
T 3v2a_R          667 PTITGNLENQ-TTSIGESIEVSCTASGNPP---PQIMWFKDNETLVE----DSGIVLKDGNRNLTIRRVRKEDEG-LYTC  737 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEeecCCCce-EEeCCCCEEEEEEeCccCC---CeEEEEECCeECcC----CCCeEEcCCCcEEEECcCCHHHCE-EEEE
Confidence            3455556666 8899999999999987764   57999999987743    34666554 789999999999998 9999


Q ss_pred             EeecccCCeEEecccceEEEEecCCCC
Q psy5694          98 RTVNKITGESQASVFQTRLSITGKLKS  124 (129)
Q Consensus        98 ~a~N~ltge~k~S~~~~~L~V~ep~~~  124 (129)
                      .|.|.+ |+..  . .+.|.|.++...
T Consensus       738 ~a~N~~-G~~~--~-~~~l~V~~~p~~  760 (772)
T 3v2a_R          738 QACSVL-GCAK--V-EAFFIIEGAQEK  760 (772)
T ss_dssp             ---------------------------
T ss_pred             EEEeCC-ccee--E-EEEEEEECCCCc
Confidence            999998 6633  3 568999876543

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.06  E-value=3.2e-10  Score=85.82  Aligned_cols=81  Identities=20%  Similarity=0.267  Sum_probs=63.6

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEc---cCccEEEec-cCCCCCCcceEEEeecccCC
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL---SSGDLYVFN-ATPNDGYKSYRCRTVNKITG  105 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl---psG~L~I~n-v~~~D~g~~Y~C~a~N~ltg  105 (129)
                      .+..|+.+.|.|.+.+.+.   +.++|.+++..|.    .+++|.+.   ..+.|.|.+ ++.+|.| .|+|.|.|.. |
T Consensus       115 ~~~~g~~~~l~C~~~g~p~---p~i~W~~~~~~~~----~~~~~~~~~~~~~~~l~i~~~~~~~d~G-~Y~C~a~N~~-G  185 (305)
T 2nzi_A          115 HALRGEVVSIKIPFSGKPD---PVITWQKGQDLID----NNGHYQVIVTRSFTSLVFPNGVERKDAG-FYVVCAKNRF-G  185 (305)
T ss_dssp             EEETTCCEEEEEEEEEESC---CEEEEEESSSBCC----SSSSCEEEECSSEEEEEETTCCCSTTCE-EEEEEEEETT-E
T ss_pred             EecCCCEEEEEEEECCCCC---CEEEEEECCEECC----CCCcEEEEEcCCceEEEEecCCccCccE-EEEEEEEeCC-C
Confidence            6788999999999987664   5799999987764    34677765   356899999 9999997 9999999998 6


Q ss_pred             eEEecccceEEEEecCC
Q psy5694         106 ESQASVFQTRLSITGKL  122 (129)
Q Consensus       106 e~k~S~~~~~L~V~ep~  122 (129)
                      ....   ...|.|.+++
T Consensus       186 ~~~~---~~~l~v~~~P  199 (305)
T 2nzi_A          186 IDQK---TVELDVADVP  199 (305)
T ss_dssp             EEEE---EEEEEEEBCC
T ss_pred             ceee---EEEEEEecCC
Confidence            6333   4477777543

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.05  E-value=4.4e-10  Score=87.30  Aligned_cols=87  Identities=20%  Similarity=0.125  Sum_probs=62.4

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCcee-EeEEeecceeeecccCCCceEEEc-------cCccEEEeccCCCCCCcce
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYII-VTSWIQDDVNIYLNTDTGGKYVVL-------SSGDLYVFNATPNDGYKSY   95 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~-v~sW~~d~~~i~~~~~~~~ry~vl-------psG~L~I~nv~~~D~g~~Y   95 (129)
                      .+.+. .+..|+++.|.|.+.+.|....+ .+.|.+++..|.+.   +.+....       .++.|.|.+++.+|.|..|
T Consensus       234 ~~~~~-~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~---~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y  309 (329)
T 3oq3_B          234 LDPKI-NVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGL---DFGVYSILTSSGGITEATLYFENVTEEYIGNTY  309 (329)
T ss_dssp             CCSEE-EECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCB---CSSEEEEEEEETTEEEEEEEESSCCGGGTTCEE
T ss_pred             cCCee-EEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeecc---CCceeeeecccCceeEeEEEEEeccHHHCCCcE
Confidence            44555 88999999999999887621124 68999998665332   2222221       4688999999999996599


Q ss_pred             EEEeecccCCeEEecccceEEEE
Q psy5694          96 RCRTVNKITGESQASVFQTRLSI  118 (129)
Q Consensus        96 ~C~a~N~ltge~k~S~~~~~L~V  118 (129)
                      +|.|.|.+ |+...+   +.|.|
T Consensus       310 ~C~a~N~~-G~~~~~---~~l~v  328 (329)
T 3oq3_B          310 TCRGHNYY-FDKTLT---TTVVL  328 (329)
T ss_dssp             EEEEECSS-CEEEEE---EEEEE
T ss_pred             EEEEEecC-CceEEE---EEEEe
Confidence            99999998 664333   46665

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.05  E-value=4.6e-10  Score=83.32  Aligned_cols=93  Identities=12%  Similarity=0.172  Sum_probs=64.4

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e---ee-ec---------ccCCCceEEEccC-----ccEEE
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NI-YL---------NTDTGGKYVVLSS-----GDLYV   83 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~---~i-~~---------~~~~~~ry~vlps-----G~L~I   83 (129)
                      ++... .|.+|++|.|.|.+.+.+.. .+.+.|++++  .   .+ ..         .....+||.+..+     +.|.|
T Consensus         8 ~p~~~-~v~~G~~v~L~C~~~g~p~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   85 (247)
T 2ghw_B            8 QSGGG-VVQPGKSLRLSCAASGFAFS-SYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQM   85 (247)
T ss_dssp             EECCE-EECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred             ecCCE-EEecCCcEEEEEEeccccCC-CceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEE
Confidence            34445 88999999999999876522 2568998843  1   11 10         0123578888653     46999


Q ss_pred             eccCCCCCCcceEEEeecccCCeEEecccceEEEEecC
Q psy5694          84 FNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        84 ~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      .+|+.+|+| .|+|.|.|.. +....+. ...|.|.++
T Consensus        86 ~~v~~~D~G-~Y~C~~~n~~-~~~~~~~-~~~l~V~~~  120 (247)
T 2ghw_B           86 NSLRAEDTA-VYYCARDRSY-YLDYWGQ-GTLVTVSSG  120 (247)
T ss_dssp             CSCCGGGCE-EEEEEEEETT-EEEEECC-CEEEEECSC
T ss_pred             CcCCHHHCE-EEEEeeeccC-CccccCC-ceEEEEecc
Confidence            999999997 9999999973 3433344 568888865

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.05  E-value=3.9e-10  Score=92.38  Aligned_cols=91  Identities=16%  Similarity=0.247  Sum_probs=64.8

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--ee---eec-----ccCCCceEEEccCc---cEEEeccCCCC
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VN---IYL-----NTDTGGKYVVLSSG---DLYVFNATPND   90 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~~---i~~-----~~~~~~ry~vlpsG---~L~I~nv~~~D   90 (129)
                      ++.+. .|.+|++|.|.|.+.+.+   .+.++|++++  ..   +..     .....+||....+|   .|.|.+++.+|
T Consensus         6 ~p~~~-~v~~G~~v~L~C~~~~~~---~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   81 (523)
T 2rcj_C            6 QPPSA-SGTPGQRVTISCTGTSSG---SITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAED   81 (523)
T ss_pred             cCCce-EEecCCcEEEEEEEeccC---CceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhh
Confidence            35555 899999999999997665   3679999974  11   110     01124788865443   69999999999


Q ss_pred             CCcceEEEeecccCCeEEecccceEEEEec
Q psy5694          91 GYKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        91 ~g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      +| .|+|+|.|..+++...+. .+.|.|..
T Consensus        82 ~G-~Y~C~a~n~~g~~~~~~~-~~~l~V~~  109 (523)
T 2rcj_C           82 ES-DYYCASWNSSDNSYVFGT-GTKVTVLG  109 (523)
T ss_pred             CE-EEEEEEccCCCccccccC-ceEEEecc
Confidence            97 999999998744433333 56888853

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.05  E-value=4.2e-10  Score=86.42  Aligned_cols=84  Identities=21%  Similarity=0.315  Sum_probs=61.6

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEe
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQA  109 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~  109 (129)
                      .+..|+++.|.|.+.+.+.   +.++|++++..|..............++.|.|.+++.+|.| .|+|.|.|.. |..  
T Consensus       134 ~v~~g~~v~l~C~~~g~p~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a~n~~-g~~--  206 (334)
T 1ry7_B          134 AVPAANTVRFRCPAAGNPT---PSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRG-NYTCVVENKF-GSI--  206 (334)
T ss_dssp             EEETTCCEEEECCCCCSSC---CEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCC-CEEEEEEETT-EEE--
T ss_pred             EecCCCcEEEEEEccCCCC---CeEEEEECCEECcccccccceecccceEEEEECCCCcccCE-EEEEEEEeCC-CCE--
Confidence            6789999999999987764   57999999977743211111111234678999999999998 9999999987 553  


Q ss_pred             cccceEEEEecC
Q psy5694         110 SVFQTRLSITGK  121 (129)
Q Consensus       110 S~~~~~L~V~ep  121 (129)
                      +. ...|.|.+.
T Consensus       207 ~~-~~~l~V~~~  217 (334)
T 1ry7_B          207 RQ-TYTLDVLER  217 (334)
T ss_dssp             EE-EEEEEEECC
T ss_pred             EE-EEEEEEecC
Confidence            33 457888763

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.05  E-value=4.2e-10  Score=81.66  Aligned_cols=88  Identities=16%  Similarity=0.236  Sum_probs=62.0

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--ee---e-ec----ccCCCceEEEccCc---cEEEeccCCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VN---I-YL----NTDTGGKYVVLSSG---DLYVFNATPNDG   91 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~~---i-~~----~~~~~~ry~vlpsG---~L~I~nv~~~D~   91 (129)
                      +.+. .|.+|++|.|.|.+.+.+.   +.+.|++++  ..   + +.    .....+||.+..+|   .|.|.+++.+|+
T Consensus         7 p~~~-~v~~G~~v~L~C~~~~~~~---~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   82 (210)
T 1lk3_L            7 PPAL-TVSPGEKLTISCKASESVT---SRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDT   82 (210)
T ss_dssp             CSEE-EECTTSCEEEEEEESSCCT---TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCcE-EEcCCCCEEEEeeCCCccC---CCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHC
Confidence            5555 8999999999999987663   458998853  11   1 10    01124788887544   899999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEec
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      | .|.|.+.|.. |. ..+. ...|.|..
T Consensus        83 G-~Y~C~~~~~~-~~-~~~~-~~~l~V~~  107 (210)
T 1lk3_L           83 A-IYFCQQSWNG-PL-TFGA-GTKLELKR  107 (210)
T ss_dssp             E-EEEEEECSSS-SC-EECC-CEEEEECC
T ss_pred             e-EEEEEEEcCC-Cc-eeCC-CEEEEEcC
Confidence            7 9999999976 33 1222 44777765

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.05  E-value=8e-10  Score=91.34  Aligned_cols=93  Identities=15%  Similarity=0.175  Sum_probs=66.7

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCC-CCceeEeEEeecceeeecccCC--CceEEEcc-C---ccEEEeccCCCCCCcceEE
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYM-SEYIIVTSWIQDDVNIYLNTDT--GGKYVVLS-S---GDLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~-~~~v~v~sW~~d~~~i~~~~~~--~~ry~vlp-s---G~L~I~nv~~~D~g~~Y~C   97 (129)
                      +.+. .+..|+++.|.|.+.+.+ ....+.++|++|+..|.+....  ..+|.... +   +.|.|.+++.+|+| .|+|
T Consensus       449 ~~~~-~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C  526 (585)
T 2ocw_A          449 PGNV-TAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEG-WYWC  526 (585)
T ss_pred             CCce-eEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCe-EEEE
Confidence            4555 899999999999997432 2235789999999766443111  22354433 2   48999999999998 9999


Q ss_pred             EeecccCCeEEecccceEEEEecCC
Q psy5694          98 RTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        98 ~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      .|.|.. |... +. ...|.|+++.
T Consensus       527 ~a~N~~-G~~~-~~-~~~l~V~~~p  548 (585)
T 2ocw_A          527 GVKQGH-FYGE-TA-AVYVAVEERK  548 (585)
T ss_pred             EeEeCC-CccE-EE-EEEEEEEeee
Confidence            999998 4422 22 4689999876

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.04  E-value=3.4e-10  Score=90.72  Aligned_cols=92  Identities=13%  Similarity=0.123  Sum_probs=65.2

Q ss_pred             EeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          23 INVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        23 ~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      ..+.+. .+.+|+++.|.|.+.+.++.....++|++|+..|...    .++....+|.|.|.+++.+|+| .|+|+|.|.
T Consensus        91 ~~~~~~-~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~----~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~n~  164 (450)
T 1z7z_I           91 LAPLPS-WQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKRE----PAVGEPAEVTTTVLVRRDHHGA-NFSCRTELD  164 (450)
T ss_dssp             ECCCCS-EECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEE----ECCTTTEEEEEEEECCSSCSSC-EEEEEEEEE
T ss_pred             ecCCCc-eEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecc----cccccccceEEEEEeeccccCc-eEEEEEEcc
Confidence            444556 7899999999999988765322278999999877542    1111223579999999999998 999999998


Q ss_pred             cCCe-----EEecccceEEEEecC
Q psy5694         103 ITGE-----SQASVFQTRLSITGK  121 (129)
Q Consensus       103 ltge-----~k~S~~~~~L~V~ep  121 (129)
                      .+..     ...+. +..|.|.++
T Consensus       165 ~g~~~~~~~~~~s~-~~~l~v~~~  187 (450)
T 1z7z_I          165 LRPQGLELFENTSA-PYQLQTFVL  187 (450)
T ss_dssp             CGGGTSCEEEEECC-CEECEECCC
T ss_pred             cCCCCceEEeeccC-ccceeeecc
Confidence            6321     12233 556777654

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.04  E-value=1.1e-09  Score=82.89  Aligned_cols=74  Identities=15%  Similarity=0.171  Sum_probs=56.3

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEc-cCccEEEeccCCCCCCcceEEEeecc
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL-SSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl-psG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      .+.+. .|.+|+++.|.|.+.+..+  .+.+.|++|+..|..    +.+|.+. .++.|.|.+++.+|+| .|+|.+.|.
T Consensus        12 ~~~~~-~v~~G~~v~l~C~~~~~~p--~~~v~W~~~~~~~~~----~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~n~   83 (317)
T 2y25_A           12 EYLSW-EVTGECNVLLKCKVANIKK--ETHIVWYKDEREISV----DEKHDFKDGICTLLITEFSKKDAG-IYEVILKDD   83 (317)
T ss_dssp             EEEEE-EEETTTEEEEEEEEESCCT--TCEEEEEETTEEECC----SCC-----CCEEEEETTCCSTTCS-CEEEEEESS
T ss_pred             eeeeE-EECCCCeEEEEEEEcCCCC--CCEEEEEECCeEcCC----CCcEEEECCeEEEEEccCCcccCe-EEEEEEECC
Confidence            34455 8899999999999877633  257899999987743    4566554 3468999999999998 999999998


Q ss_pred             cCCe
Q psy5694         103 ITGE  106 (129)
Q Consensus       103 ltge  106 (129)
                      . |+
T Consensus        84 ~-g~   86 (317)
T 2y25_A           84 R-GK   86 (317)
T ss_dssp             S-CE
T ss_pred             C-Cc
Confidence            7 54

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.04  E-value=6.4e-10  Score=82.50  Aligned_cols=90  Identities=17%  Similarity=0.225  Sum_probs=60.6

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeec----------------ceeeecccCCCceEEEcc----CccEEE
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD----------------DVNIYLNTDTGGKYVVLS----SGDLYV   83 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d----------------~~~i~~~~~~~~ry~vlp----sG~L~I   83 (129)
                      .++.. .|.+|++|.|.|.+.+.+   .+.+.|++.                +..+.. ....+||.+..    ++.|.|
T Consensus         7 ~p~~~-~v~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~L~I   81 (246)
T 4dzb_B            7 HPSWV-ISKSGTSVKIECRSLDFQ---ATTMFWYRQFPKQSLMLMATSNEGSKATYEQ-GVEKDKFLINHASLTLSTLTV   81 (246)
T ss_dssp             ECSEE-EEETTSCEEEEEEESSSC---CCSEEEEEECTTSCCEEEEEECTTSCCEECT-TCCGGGEEEEEEETTEEEEEE
T ss_pred             CCcEE-EEeCCCcEEEEeEecCCC---ceEEEEEEECCCCCcEEEEEEccCCCceecC-cccCCcEEEEecCCCEEEEEE
Confidence            34445 899999999999987764   356899982                111111 01227888864    336999


Q ss_pred             eccCCCCCCcceEEEeecccCC-eEEecccceEEEEec
Q psy5694          84 FNATPNDGYKSYRCRTVNKITG-ESQASVFQTRLSITG  120 (129)
Q Consensus        84 ~nv~~~D~g~~Y~C~a~N~ltg-e~k~S~~~~~L~V~e  120 (129)
                      .+|+.+|+| .|.|.+.|...+ ....+. ...|.|.+
T Consensus        82 ~~v~~~D~G-~Y~C~~~~~~~~~~~~~~~-~~~l~V~~  117 (246)
T 4dzb_B           82 TSAHPEDSS-FYICSARTSGDFGEQFFGP-GTRLTVLE  117 (246)
T ss_dssp             CSCCGGGCE-EEEEEECCSSGGGCCEECC-CEEEEEES
T ss_pred             CCCCHHHCE-EEEEEEecCCCCcceEEcC-CEEEEEec
Confidence            999999997 999999986421 112233 45777764

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.04  E-value=2.4e-10  Score=83.79  Aligned_cols=83  Identities=25%  Similarity=0.445  Sum_probs=58.5

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEee----cceeeecccCCCceEEE----------ccCccEEEeccCCCCCCcce
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQ----DDVNIYLNTDTGGKYVV----------LSSGDLYVFNATPNDGYKSY   95 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~----d~~~i~~~~~~~~ry~v----------lpsG~L~I~nv~~~D~g~~Y   95 (129)
                      .+..|.++.|.|.+.+.+.   +.++|.+    ++..|.+.   +..+..          ..++.|.|.+++.+|.| .|
T Consensus       125 ~~~~g~~v~L~C~~~~~p~---p~v~W~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y  197 (241)
T 3grw_A          125 TAVLGSDVEFHCKVYSDAQ---PHIQWLKHVEVNGSKVGPD---GTPYVTVLKSWISESVEADVRLRLANVSERDGG-EY  197 (241)
T ss_dssp             ECCTTCCEEEEEEEECSSC---CEEEEEEECCSSSCSSCTT---TCCCEEEEEEEECSBSEEEEEEEECSCCGGGCE-EE
T ss_pred             eecCCCEEEEEEEEecCCC---CEEEEEEcccCCCcccCCC---CceeeeeeeEeeeeecCCceEEEECcCCcccCc-EE
Confidence            6788999999999987764   4799999    66555432   222221          13567999999999997 99


Q ss_pred             EEEeecccCCeEEecccceEEEEecCCC
Q psy5694          96 RCRTVNKITGESQASVFQTRLSITGKLK  123 (129)
Q Consensus        96 ~C~a~N~ltge~k~S~~~~~L~V~ep~~  123 (129)
                      +|.|.|.. |....   ...|.|.+|..
T Consensus       198 ~C~a~N~~-g~~~~---~~~l~V~~~p~  221 (241)
T 3grw_A          198 LCRATNFI-GVAEK---AFWLSVHGPRA  221 (241)
T ss_dssp             EEEEECSS-CEEEE---EEEEEC-----
T ss_pred             EEEEecCc-ceEEE---EEEEEecCCCC
Confidence            99999988 66433   45888887654

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.04  E-value=1.1e-09  Score=85.46  Aligned_cols=82  Identities=21%  Similarity=0.295  Sum_probs=62.4

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc---cEEEeccCCCCCCcceEEEeecccCCe
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGE  106 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG---~L~I~nv~~~D~g~~Y~C~a~N~ltge  106 (129)
                      .+..|+++.|.|.+.+.|+   +.++|.+|+..|...  ...++.+..+|   .|.|.+++.+|.| .|+|.|.|.. |+
T Consensus       111 ~~~~g~~~~l~C~~~g~p~---~~i~W~~~g~~l~~~--~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~N~~-G~  183 (389)
T 2jll_A          111 YSWEGNPINISCDVKSNPP---ASIHWRRDKLVLPAK--NTTNLKTYSTGRKMILEIAPTSDNDFG-RYNCTATNHI-GT  183 (389)
T ss_dssp             EECTTCCEEEEECEEEESC---CEEEEEETTEESSCT--TCTTEEEEECSSCEEEEECCCSTTSSE-EEEEEEEETT-EE
T ss_pred             EeccCCEEEEEEEEEecCC---CeEEEEECCccCCcc--cCceEEEeccCCEEEEEECCCChhhCE-EEEEEEEcCC-Cc
Confidence            6788999999999987763   679999999877532  23467776544   5999999999997 9999999998 65


Q ss_pred             EEecccceEEEEecC
Q psy5694         107 SQASVFQTRLSITGK  121 (129)
Q Consensus       107 ~k~S~~~~~L~V~ep  121 (129)
                      ..  . ...|.+.++
T Consensus       184 ~~--~-~~~l~v~~~  195 (389)
T 2jll_A          184 RF--Q-EYILALADV  195 (389)
T ss_dssp             EE--E-EEEEEECCC
T ss_pred             EE--E-EEEEEecCC
Confidence            32  2 345655433

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=99.04  E-value=4e-10  Score=77.20  Aligned_cols=91  Identities=23%  Similarity=0.329  Sum_probs=59.7

Q ss_pred             eeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeeccee-----eecc---------------------cCCCceEEEcc--
Q psy5694          26 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVN-----IYLN---------------------TDTGGKYVVLS--   77 (129)
Q Consensus        26 ~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~-----i~~~---------------------~~~~~ry~vlp--   77 (129)
                      ... .|.+|++|.|.|.+........+.+.|.+++..     |...                     .+-.+|+.+..  
T Consensus        12 ~~v-~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~   90 (135)
T 1xt5_A           12 TEV-EVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLA   90 (135)
T ss_dssp             SEE-EEETTSCEEECCEEEEETCCSCCEEEEEEESSSSSEEEEEEEEECCCCTTCCCCTTSEEEEECGGGTTTEEESCTT
T ss_pred             ceE-EEeCCCCEEEeeEeecCCCCCccEEEEEeeCCCCCceEEEEeccccccccccccccccccccChhhcCcEEEecCC
Confidence            344 889999999999974210112357899997521     2110                     01127887754  


Q ss_pred             CccEEEeccCCCCCCcceEEEeecccC----CeEEecccceEEEEecC
Q psy5694          78 SGDLYVFNATPNDGYKSYRCRTVNKIT----GESQASVFQTRLSITGK  121 (129)
Q Consensus        78 sG~L~I~nv~~~D~g~~Y~C~a~N~lt----ge~k~S~~~~~L~V~ep  121 (129)
                      ++.|.|+|++.+|+| .|.|.+.|.-.    |+  .+. ...|.|+.+
T Consensus        91 ~~sL~I~~v~~~D~G-~Y~C~v~~~~~~~~~g~--~~~-~~~L~V~g~  134 (135)
T 1xt5_A           91 APTLRLTHVHPQDGG-RYWCQVAQWSIRTEFGL--DAK-SVVLKVTGH  134 (135)
T ss_dssp             SCCEEECSCCGGGCE-EEEEEEECSSCCSGGGE--EEE-EEEEEEETT
T ss_pred             CCeEEECCCChhhCc-EEEEEEEcCCccccccc--cce-eEEEEEecC
Confidence            478999999999997 99999998521    22  122 457888754

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.03  E-value=2.5e-10  Score=82.63  Aligned_cols=66  Identities=14%  Similarity=0.069  Sum_probs=42.5

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc----CccEEEeccCCCCCCcceEEEeeccc
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS----SGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp----sG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      .|.+|+++.|.|.+.+.+    +.+.|.+|+..+.+.   ..+.....    .+.|.|.+|+.+|+| .|+|.|.|..
T Consensus       110 ~v~~G~~v~L~C~~~~~p----~~~~W~k~g~~~~~~---~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~n~~  179 (196)
T 2d3v_A          110 VVTSGENVTLQCGSRLRF----DRFILTEEGDHKLSW---TLDSQLTPSGQFQALFPVGPVTPSHRW-MLRCYGSRRH  179 (196)
T ss_dssp             -------CEEEEEESSCC----SEEEEEEC---CCEE---EEECEECTTSCEEEEEECCCCBTTBCE-EEEEEEEETT
T ss_pred             cccCCCcEEEEEEcCCCC----CEEEEEccCCccccc---ccccccccCCCceeEEEeeecCcccCe-eEEEEEEccC
Confidence            688999999999998766    468999999665321   11112332    278999999999997 9999999975

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.03  E-value=1.1e-09  Score=82.19  Aligned_cols=96  Identities=16%  Similarity=0.236  Sum_probs=64.6

Q ss_pred             eEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--ee---e-ecc----cCCCceEEEccCcc---EEEeccCC
Q psy5694          22 EINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VN---I-YLN----TDTGGKYVVLSSGD---LYVFNATP   88 (129)
Q Consensus        22 ~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~~---i-~~~----~~~~~ry~vlpsG~---L~I~nv~~   88 (129)
                      ...+... .|.+|+++.|.|.+.+.+.   +.+.|+++.  ..   + ...    ....+||.+..+|.   |.|.+++.
T Consensus       142 ~~~p~~~-~v~~G~~v~L~C~~~~~~~---~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  217 (256)
T 3umt_A          142 TQSPSSL-SASLGERVSITCRASQDIG---SNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLES  217 (256)
T ss_dssp             EEECSEE-EECTTCCEEEEEEESSCCT---TCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCG
T ss_pred             EcCCCeE-EEECCCCEEEEEEEecCCC---cEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCCh
Confidence            3344455 8999999999999987664   368999842  11   1 110    11247887765444   99999999


Q ss_pred             CCCCcceEEEeecccCCeEEecccceEEEEecCCCCC
Q psy5694          89 NDGYKSYRCRTVNKITGESQASVFQTRLSITGKLKSL  125 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~~~~  125 (129)
                      +|+| .|.|.+.|.  +....+. ..+|.|+++....
T Consensus       218 ~D~G-~Y~C~~~~~--~~~~fg~-gt~L~V~~~~~~~  250 (256)
T 3umt_A          218 EDFV-DYYCLQYAS--SPPTFGG-GTKLEIKRAAALE  250 (256)
T ss_dssp             GGCS-EEEEEECSS--SSCEECC-CEEEEEC------
T ss_pred             hHCE-EEEEEEeeC--CCcEECC-CEEEEEECCCccc
Confidence            9998 999999996  3444555 7799999776543

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.03  E-value=1.8e-10  Score=82.98  Aligned_cols=65  Identities=14%  Similarity=0.139  Sum_probs=51.0

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccC
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT  104 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~lt  104 (129)
                      .|.+|+++.|.|.+.+.+    +.+.|.+|+..+..     .......++.|.|.+|+.+|+| .|+|.|.|...
T Consensus       104 ~v~~G~~v~l~C~~~~~~----~~~~w~k~g~~~~~-----~~~~~~~~~~L~i~~v~~~D~G-~Y~C~a~n~~~  168 (184)
T 2gi7_A          104 AVSSGGDVTLQCQTRYGF----DQFALYKEGDPAPY-----KNPERWYRASFPIITVTAAHSG-TYRCYSFSSRD  168 (184)
T ss_dssp             SSCCTTCEEEEEECSSCC----CEEEEEECCCCTTS-----CCCCEEEEESSSEEEETTCCSE-EEEEEEECTTS
T ss_pred             eecCCCcEEEEEEcCCCC----cEEEEEECCCcCcc-----eecCCCceEEEEEccCCccCCe-EEEEEEEeCCC
Confidence            678999999999986544    36899999866532     1122345789999999999997 99999999853

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.03  E-value=7.4e-10  Score=80.03  Aligned_cols=86  Identities=21%  Similarity=0.308  Sum_probs=61.8

Q ss_pred             eeeeEEEeCCeEEEEeeCCCCCCCceeEeEEee----cceeeecccCCCceEEE--------ccCccEEEeccCCCCCCc
Q psy5694          26 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQ----DDVNIYLNTDTGGKYVV--------LSSGDLYVFNATPNDGYK   93 (129)
Q Consensus        26 ~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~----d~~~i~~~~~~~~ry~v--------lpsG~L~I~nv~~~D~g~   93 (129)
                      ... .+..|.++.|.|.+.+.+.   +.++|++    ++..|...  .......        ..++.|.|.+++.+|.| 
T Consensus       126 ~~~-~~~~g~~~~l~C~~~~~p~---p~v~W~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-  198 (231)
T 3ojm_B          126 ANA-STVVGGDVEFVCKVYSDAQ---PHIQWIKHVEKNGSKYGPD--GLPYLKVLKHSGINSSNAEVLALFNVTEADAG-  198 (231)
T ss_dssp             CCE-EEETTCCEEEECCEECSSC---CEEEEEEECCBTTBSBCTT--SCBCEEEEEECSTTCSCTTEEEECSCCGGGCE-
T ss_pred             Cce-EEEeCCcEEEEEEEecCCC---CEEEEEECCCCCCccccCC--CcceEeEecccccccCCccEEEEecCCHHHCe-
Confidence            344 7889999999999987764   4789999    66555332  1111111        23456999999999997 


Q ss_pred             ceEEEeecccCCeEEecccceEEEEecCC
Q psy5694          94 SYRCRTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        94 ~Y~C~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      .|+|.|.|.. |..  +. ...|.|.++.
T Consensus       199 ~Y~C~a~n~~-g~~--~~-~~~l~V~~~p  223 (231)
T 3ojm_B          199 EYICKVSNYI-GQA--NQ-SAWLTVLPKQ  223 (231)
T ss_dssp             EEEEEEEETT-EEE--EE-EEEEEEECCC
T ss_pred             EEEEEEEecc-ceE--ee-EEEEEEecCC
Confidence            9999999998 553  33 5588887654

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.03  E-value=5.7e-10  Score=81.27  Aligned_cols=91  Identities=18%  Similarity=0.165  Sum_probs=60.9

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--ee---ee-c----ccCCCceEEEccCc---cEEEeccCCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VN---IY-L----NTDTGGKYVVLSSG---DLYVFNATPNDG   91 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~~---i~-~----~~~~~~ry~vlpsG---~L~I~nv~~~D~   91 (129)
                      +.+. .|.+|++|.|.|.+.+...+ .+.+.|++++  ..   +. .    .....+||.+..++   .|.|.+++.+|+
T Consensus         7 p~~~-~v~~G~~v~L~C~v~~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   84 (216)
T 2xzc_L            7 PPSV-SAAPGQKVTISCSGSSSNIG-NNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDE   84 (216)
T ss_dssp             CSEE-EECTTCCEEEEEECCTTTGG-GSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             CCcE-EecCCCeEEEEEEeecCCCC-CCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccC
Confidence            4555 88999999999996443321 3568999854  11   11 0    01124688887544   799999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEec
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      | .|+|.+.|..+ ....+. ...|.|..
T Consensus        85 G-~Y~C~~~~~~~-~~~~~~-~~~l~V~~  110 (216)
T 2xzc_L           85 A-DYYCGTWDSSL-NPVFGG-GTKLEIKR  110 (216)
T ss_dssp             E-EEEEEEECTTS-CEEEBC-CEEEEECC
T ss_pred             E-EEEEEEEeCCC-cceECC-CEEEEEcC
Confidence            7 99999999863 112232 45777753

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.03  E-value=1e-09  Score=83.58  Aligned_cols=82  Identities=13%  Similarity=0.205  Sum_probs=60.1

Q ss_pred             EEEeCCeEEEEeeC------CCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEee-cc
Q psy5694          30 NVILGNTAVLRCQI------PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTV-NK  102 (129)
Q Consensus        30 ~V~~GntAvL~C~v------p~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~-N~  102 (129)
                      .+..|+++.|.|.+      .+.|   .+.++|++++..|.+   ...++ ...++.|.|.+++.+|+| .|+|.|. |.
T Consensus       114 ~~~~g~~v~l~C~~~~~~~~~g~p---~~~i~W~k~~~~l~~---~~~~~-~~~~~~L~i~~v~~~d~G-~Y~C~a~~n~  185 (315)
T 1itb_B          114 KLPVAGDGGLVCPYMEFFKNENNE---LPKLQWYKDCKPLLL---DNIHF-SGVKDRLIVMNVAEKHRG-NYTCHASYTY  185 (315)
T ss_dssp             EEETTSCEEEECSSCTTTCTTTTC---CCCCEEEETTEECCC---CSSSE-EEETTEEEESSCCGGGCE-EEEEEEEEEE
T ss_pred             EEecCCCeEEEEecccccccCCCC---CCEEEEEECCEECCC---ccceE-eecCceEEEEeceehhCc-EEEEEEEcCC
Confidence            68899999999998      4445   357999999987743   23444 456889999999999997 9999999 66


Q ss_pred             cCCeEEecccceEEEEec
Q psy5694         103 ITGESQASVFQTRLSITG  120 (129)
Q Consensus       103 ltge~k~S~~~~~L~V~e  120 (129)
                      . |+....+....|.+.+
T Consensus       186 ~-g~~~~~~~~~~~~~~~  202 (315)
T 1itb_B          186 L-GKQYPITRVIEFITLE  202 (315)
T ss_dssp             T-TEEEEEEEEEEEEEEC
T ss_pred             C-CcEEEEEEEEEEEEec
Confidence            5 6643322233454443

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.03  E-value=8.2e-10  Score=84.79  Aligned_cols=90  Identities=16%  Similarity=0.120  Sum_probs=64.5

Q ss_pred             eeeEeeeee-eEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEE
Q psy5694          20 KYEINVNYE-HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCR   98 (129)
Q Consensus        20 ~y~~~v~~~-~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~   98 (129)
                      +|++++.+. +.|..|.++.|.|.+ +.+.+ ...++|.+.+..+      +..+.....+.|.|.||+.+|+| .|.|.
T Consensus         7 ~~~V~pp~~~v~v~~G~sv~L~C~a-~~p~P-~~~i~W~~~~~~l------~~~~~~~~~~~L~I~~v~~~d~G-~Y~C~   77 (210)
T 1gsm_A            7 PLQVEPPEPVVAVALGASRQLTCRL-ACADR-GASVQWRGLDTSL------GAVQSDTGRSVLTVRNASLSAAG-TRVCV   77 (210)
T ss_dssp             SEEEESCCSEEEEETTCCEEEEEEE-CCSST-TCEEEEESSTTTT------CCEEEESSEEEEEECSCCGGGCE-EEEEE
T ss_pred             CEEEeCCCCceEEeCCCCEEEEEEC-CCCCC-CcceEEeeccccc------CcEEecCCccEEEECccCcccCc-eEEEE
Confidence            566666553 589999999999999 66532 2379999965322      22232334567999999999997 99999


Q ss_pred             eecccCCeEEecccceEEEEecCC
Q psy5694          99 TVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        99 a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      |.|.. |.  .+. .+.|+|..++
T Consensus        78 a~n~~-~~--~~~-~~~ltV~~~P   97 (210)
T 1gsm_A           78 GSCGG-RT--FQH-TVQLLVYAFP   97 (210)
T ss_dssp             EEETT-EE--EEE-EEEEEEEBCC
T ss_pred             EEeCC-Cc--eEE-EEEEEEEecC
Confidence            99975 33  333 6688888654

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.03  E-value=1.1e-09  Score=81.58  Aligned_cols=95  Identities=12%  Similarity=0.196  Sum_probs=61.7

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceee-------ec-------ccCCCceEEEc-----cCccE
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI-------YL-------NTDTGGKYVVL-----SSGDL   81 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i-------~~-------~~~~~~ry~vl-----psG~L   81 (129)
                      +.+.+.+. .|.+|+++.|.|.+........+.+.|.+++...       ..       ...-.+|+.+.     .++.|
T Consensus         8 v~~~~~~~-~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   86 (268)
T 3mj6_A            8 LTVSSPQL-RVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSL   86 (268)
T ss_dssp             ----CCEE-EEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCE
T ss_pred             cccCCCce-EEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEE
Confidence            34455555 8999999999999974333346789999965211       00       00113666663     34889


Q ss_pred             EEeccCCCCCCcceEEEeecccCCeEEecccceEEEEe
Q psy5694          82 YVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        82 ~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      .|.||+.+|+| .|+|.+.|..... ..+. ...|.|.
T Consensus        87 ~I~~v~~~D~G-~Y~C~~~~~~~~~-~~~~-~~~l~V~  121 (268)
T 3mj6_A           87 LLQDVQKADEG-IYTCEIRLKNESM-VMKK-PVELWVL  121 (268)
T ss_dssp             EECSCCGGGCE-EEEEEEEETTCCC-EEEE-EEEEEEE
T ss_pred             EECCCCHhHCE-EEEEEEEecCCcc-eEEE-EEEEEEe
Confidence            99999999997 9999999875332 2333 4566664

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.02  E-value=1.3e-09  Score=82.18  Aligned_cols=89  Identities=16%  Similarity=0.163  Sum_probs=59.6

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeec--ce---eee---------cccCCCceEEEcc----CccEEEec
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD--DV---NIY---------LNTDTGGKYVVLS----SGDLYVFN   85 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d--~~---~i~---------~~~~~~~ry~vlp----sG~L~I~n   85 (129)
                      .+... .|.+|++|+|.|.+.. +   .+.+.|++.  +.   .+.         ......+||.+..    ++.|.|+|
T Consensus        32 ~p~~v-~v~~G~~v~L~C~~~~-~---~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~  106 (268)
T 3pl6_D           32 TPSNK-VTEKGKYVELRCDPIS-G---HTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQR  106 (268)
T ss_dssp             CCSEE-EEETTCCEEEEEBCBT-T---CCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECS
T ss_pred             CCCEE-EecCCCCEEEEEEeCC-C---CceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECC
Confidence            34445 8999999999999852 2   357899882  21   110         0000127888875    56799999


Q ss_pred             cCCCCCCcceEEEeecccCCeEEecccceEEEEec
Q psy5694          86 ATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        86 v~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      |+.+|+| .|.|.+.|.. +....+. ...|.|.+
T Consensus       107 v~~~D~G-~Y~C~~~~~~-~~~~~~~-~~~l~V~~  138 (268)
T 3pl6_D          107 TERGDSA-VYLCATSALG-DTQYFGP-GTRLTVLE  138 (268)
T ss_dssp             CCGGGCE-EEEEEEESSS-SSCEECC-CEEEEEES
T ss_pred             CCcccCE-EEEEEEecCC-CceeeCC-cEEEEEec
Confidence            9999997 9999999853 1212333 45777765

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.02  E-value=1.5e-09  Score=83.70  Aligned_cols=94  Identities=21%  Similarity=0.295  Sum_probs=66.0

Q ss_pred             EeeeeeeEEEeCCeEEEEeeCCCC-CCCceeEeEEeeccee----eecc-cCCCceEEEc--------cCccEEEeccCC
Q psy5694          23 INVNYEHNVILGNTAVLRCQIPSY-MSEYIIVTSWIQDDVN----IYLN-TDTGGKYVVL--------SSGDLYVFNATP   88 (129)
Q Consensus        23 ~~v~~~~~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~~~----i~~~-~~~~~ry~vl--------psG~L~I~nv~~   88 (129)
                      ..+++. .|.+|+++.|.|.+.+. +   .+.+.|++++..    |... .....|+.+.        .++.|.|.+++.
T Consensus         8 ~~p~~~-~v~~G~~v~L~C~~~~~~p---~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~   83 (327)
T 2wng_A            8 QPDKSV-SVAAGESAILHCTVTSLIP---VGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITP   83 (327)
T ss_dssp             CCCSEE-EEETTSCEEECCEESCCCS---CCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCG
T ss_pred             cCCCce-EEecCCcEEEEEEccCcCC---CceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCcc
Confidence            345556 89999999999999876 4   257899998632    3221 1123477764        356799999999


Q ss_pred             CCCCcceEEEeecccCCe--EEecccceEEEEecCC
Q psy5694          89 NDGYKSYRCRTVNKITGE--SQASVFQTRLSITGKL  122 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~ltge--~k~S~~~~~L~V~ep~  122 (129)
                      +|+| .|+|.|.|..+..  ...+. .+.|.|..+.
T Consensus        84 ~D~G-~Y~C~a~n~~~~~~~~~~~~-~~~l~V~~~p  117 (327)
T 2wng_A           84 ADAG-TYYCVKFRKGSPDTEFKSGA-GTELSVRAKP  117 (327)
T ss_dssp             GGCE-EEEEEEEESSTTCEEEEECC-CEEEEEEBCC
T ss_pred             ccCe-EEEEEeecCCCcceeEeecC-cEEEEEEecC
Confidence            9997 9999999975332  22333 6688887553

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.02  E-value=1.5e-09  Score=80.50  Aligned_cols=87  Identities=17%  Similarity=0.209  Sum_probs=63.1

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEee--cceee----ecc----cCCCceEEEccC---ccEEEeccCCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQ--DDVNI----YLN----TDTGGKYVVLSS---GDLYVFNATPNDG   91 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~--d~~~i----~~~----~~~~~ry~vlps---G~L~I~nv~~~D~   91 (129)
                      +... .+.+|++|.|.|.+.+.++   +.+.|++  ++..+    ...    ....+||.+..+   +.|.|.+++.+|+
T Consensus       142 ~~~~-~v~~G~~v~L~C~~~~~~~---~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~  217 (247)
T 2ghw_B          142 PATL-SLSPGERATLSCRASQSVR---SNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDF  217 (247)
T ss_dssp             CSEE-EECTTSCEEEEEEESSCCT---TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGC
T ss_pred             CCEE-EecCCCcEEEEEEeCCCcc---ceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHC
Confidence            3444 7899999999999987764   3689998  44322    100    122578877543   3599999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEe
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      | .|.|.|.|.  +....+. ..+|.|.
T Consensus       218 G-~Y~C~a~~~--~~~~~g~-~t~l~V~  241 (247)
T 2ghw_B          218 A-VYYCQQRSN--WPPTFGQ-GTKVEVK  241 (247)
T ss_dssp             E-EEEEEECSS--SSCEECC-CEEEEEC
T ss_pred             E-EEEEEEccC--CCceEcC-CEEEEEC
Confidence            7 999999986  4445555 7799997

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.02  E-value=7.1e-10  Score=81.77  Aligned_cols=94  Identities=18%  Similarity=0.204  Sum_probs=65.3

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCC-ceeEeEEeecc--e---eeecc-----cCCCceEEEccCc---cEEEeccCCC
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSE-YIIVTSWIQDD--V---NIYLN-----TDTGGKYVVLSSG---DLYVFNATPN   89 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~-~v~v~sW~~d~--~---~i~~~-----~~~~~ry~vlpsG---~L~I~nv~~~   89 (129)
                      .+.+. .|.+|++|.|.|.+.+.+.+ -.+.+.|++++  .   .+...     ....+||.+..+|   .|.|++|+.+
T Consensus         7 ~p~~~-~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   85 (240)
T 1moe_A            7 SPASL-AVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEAD   85 (240)
T ss_dssp             ECSEE-EECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eCCeE-EecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChh
Confidence            45555 89999999999999876510 13678999852  1   12110     1135788887544   6999999999


Q ss_pred             CCCcceEEEeecccCCeEEecccceEEEEecCC
Q psy5694          90 DGYKSYRCRTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        90 D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      |+| .|+|.+.|.. +. ..+. .+.|.|..+.
T Consensus        86 D~G-~Y~C~~~n~~-~~-~~~~-~~~l~V~~~~  114 (240)
T 1moe_A           86 DVA-TYYCQQTNED-PY-TFGG-GTKLEIKGGG  114 (240)
T ss_dssp             GCE-EEEEEECSSS-SC-CBCC-CEEEEECCCS
T ss_pred             hCE-EEEEEEccCC-ce-eecC-CEEEEEecCC
Confidence            997 9999999985 22 2233 5688888754

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.02  E-value=6.1e-10  Score=86.22  Aligned_cols=84  Identities=14%  Similarity=0.150  Sum_probs=60.6

Q ss_pred             eeeeEEEeCCeEEEEeeC-----CCCCCCceeEeEEeecceeeecccCCCceEEEccC-ccEEEeccCCCCCCcceEEEe
Q psy5694          26 NYEHNVILGNTAVLRCQI-----PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS-GDLYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        26 ~~~~~V~~GntAvL~C~v-----p~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlps-G~L~I~nv~~~D~g~~Y~C~a   99 (129)
                      .+. .+..|+++.|.|..     .+.|   .+.+.|++|+..|..    ..++  ..+ ..|.|.+++.+|+| .|+|.|
T Consensus       128 ~~~-~~~~g~~~~l~C~~~~~~~~g~p---~~~v~W~k~~~~l~~----~~~~--~~~~~~L~i~~v~~~d~G-~Y~C~a  196 (349)
T 4dep_C          128 VHK-LYIEYGIQRITCPNVDGYFPSSV---KPTITWYMGCYKIQN----FNNV--IPEGMNLSFLIALISNNG-NYTCVV  196 (349)
T ss_dssp             EEE-EETTCSEEEEECCSCTTSSCTTS---CCEEEEEETTEECCS----CSSE--EEETTEEEEESCCGGGCE-EEEEEE
T ss_pred             cce-eeecCccEEEEcCCCcccccCCC---CceEEEeeCCEECCC----ccce--eecCCEEEEeeeeecCCc-EEEEEE
Confidence            344 67889999999985     3333   467999999987731    2333  344 45999999999997 999999


Q ss_pred             ecccCCeEE-ecccceEEEEecC
Q psy5694         100 VNKITGESQ-ASVFQTRLSITGK  121 (129)
Q Consensus       100 ~N~ltge~k-~S~~~~~L~V~ep  121 (129)
                      .|..+|... .+. ...|.|.++
T Consensus       197 ~n~~~g~~~~~~~-~~~l~v~~~  218 (349)
T 4dep_C          197 TYPENGRTFHLTR-TLTVKVVGS  218 (349)
T ss_dssp             EEEETTEEEEEEE-EEEEEEECC
T ss_pred             EEeeCCEEEEEEE-EEEEEEEcc
Confidence            999877642 233 556777653

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.02  E-value=1.2e-09  Score=77.65  Aligned_cols=80  Identities=21%  Similarity=0.290  Sum_probs=61.3

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEee
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      +...+... .+.+|+++.|.|.+.+.+..  ..+.|.+++..|..           .++.|.|.+++.+|+| .|+|.+.
T Consensus        10 i~~~p~~~-~v~~G~~v~L~C~~~~~p~~--~~~~W~~~~~~~~~-----------~~~~L~i~~~~~~d~G-~Y~C~~~   74 (175)
T 1fnl_A           10 VFLEPQWY-SVLEKDSVTLKCQGAYSPED--NSTQWFHNESLISS-----------QASSYFIDAATVNDSG-EYRCQTN   74 (175)
T ss_dssp             EEEESCCS-EEETTCCEEEEEECCCBTTB--CCCEEEETTEEEES-----------SCSEEEESSCCGGGCE-EEEEECS
T ss_pred             EEEcCCce-eeeCCCcEEEEeeCCCCCCC--cceEEEECCEEccC-----------CceEEEEeCCCcccCE-EEEEEee
Confidence            34556655 78999999999999887653  24799999866631           3678999999999997 9999999


Q ss_pred             cccCCeEEecccceEEEEecC
Q psy5694         101 NKITGESQASVFQTRLSITGK  121 (129)
Q Consensus       101 N~ltge~k~S~~~~~L~V~ep  121 (129)
                      |.. +    +. ...|.|.++
T Consensus        75 n~~-~----s~-~~~l~V~~~   89 (175)
T 1fnl_A           75 LST-L----SD-PVQLEVHIG   89 (175)
T ss_dssp             SSC-C----CC-CEEEEEECS
T ss_pred             CCc-c----cc-cEEEEEeCC
Confidence            843 2    33 567777743

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.01  E-value=1.1e-09  Score=77.19  Aligned_cols=81  Identities=15%  Similarity=0.155  Sum_probs=60.8

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCcee-EeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEe
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYII-VTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~-v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a   99 (129)
                      +...+.+. .+..|.++.|.|.+.+.|+   + .++|++++..+...     ..   .++.|.|.++  +|+| .|+|.|
T Consensus       101 ~~~~~~~~-~~~~g~~~~l~C~~~g~p~---p~~v~W~~~~~~~~~~-----~~---~~~~L~i~~~--~d~G-~Y~C~a  165 (182)
T 1rhf_A          101 FTVEPKDL-AVPPNAPFQLSCEAVGPPE---PVTIVWWRGTTKIGGP-----AP---SPSVLNVTGV--TQST-MFSCEA  165 (182)
T ss_dssp             EEECCCCE-EECTTCCEEEEEEEECSSS---CCEEEEEETTEECSCS-----EE---SSEEEEECCC--SSCE-EEEEEE
T ss_pred             EEecCcce-EecCCCEEEEEeEecCCCC---CCEEEEEcCCeECCCC-----CC---CceEEEEecc--ccCe-EEEEEE
Confidence            44455555 8899999999999987774   4 78999999776321     11   6789999999  5886 999999


Q ss_pred             ecccCCeEEecccceEEEEe
Q psy5694         100 VNKITGESQASVFQTRLSIT  119 (129)
Q Consensus       100 ~N~ltge~k~S~~~~~L~V~  119 (129)
                      .|.. |.. .|. ...|.|+
T Consensus       166 ~N~~-g~~-~s~-~~~l~Vk  182 (182)
T 1rhf_A          166 HNLK-GLA-SSR-TATVHLQ  182 (182)
T ss_dssp             EETT-EEE-ECC-CEEEEEC
T ss_pred             ECCC-CCc-ccc-eEEEEeC
Confidence            9998 653 233 5577764

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.01  E-value=1.4e-09  Score=81.02  Aligned_cols=95  Identities=16%  Similarity=0.228  Sum_probs=64.3

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCC--ceeEeEEeecc--eee----e----cccCCCceEEEccCc---cEEEec
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSE--YIIVTSWIQDD--VNI----Y----LNTDTGGKYVVLSSG---DLYVFN   85 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~--~v~v~sW~~d~--~~i----~----~~~~~~~ry~vlpsG---~L~I~n   85 (129)
                      +...+.+. .|.+|++|.|.|.+.+.++.  -.+.+.|++++  ..+    +    ......+||.+..+|   .|.|.+
T Consensus        41 ~~~~p~~~-~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~  119 (254)
T 2c1o_A           41 MTQSPLTL-SVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISR  119 (254)
T ss_dssp             EEEECSEE-EECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred             EEeCCceE-EecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEECc
Confidence            33345555 89999999999999876631  12568999743  211    1    011234788887555   799999


Q ss_pred             cCCCCCCcceEEEeecccCCeEEecccceEEEEec
Q psy5694          86 ATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        86 v~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      ++.+|+| .|+|.|.|.. +. ..+. ...|.|..
T Consensus       120 v~~~D~G-~Y~C~a~n~~-~~-~~~~-~~~l~V~~  150 (254)
T 2c1o_A          120 VEAEDLG-IYYCVQGSHF-PP-TFGA-GTKLELKR  150 (254)
T ss_dssp             CCGGGCS-EEEEEECSSS-SC-EEBC-CEEEEECC
T ss_pred             CCcccCE-EEEEEEEcCc-ce-EecC-CEEEEECC
Confidence            9999997 9999999975 32 2222 34677763

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.01  E-value=1.9e-09  Score=78.83  Aligned_cols=93  Identities=13%  Similarity=0.205  Sum_probs=62.3

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e---ee-eccc-----------CCCceEEEcc---Cc--cE
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NI-YLNT-----------DTGGKYVVLS---SG--DL   81 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~---~i-~~~~-----------~~~~ry~vlp---sG--~L   81 (129)
                      +++.. .|.+|.+|.|.|.+.+.+.+ .+.+.|++++  .   .| ....           ...+|+.+..   .|  .|
T Consensus         6 ~p~~~-~~~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L   83 (220)
T 1pz5_B            6 ESGGG-LVQPGGSMKLSCVASGFTFS-NYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYL   83 (220)
T ss_dssp             EECCE-EECTTCCEEEEEEEESSCGG-GSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEE
T ss_pred             ccCCE-EEcCCCeEEEEEEEcCCccC-CccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEE
Confidence            35555 88999999999999765422 3578999864  1   12 1100           1147888763   23  89


Q ss_pred             EEeccCCCCCCcceEEEeecccCCeEEecccceEEEEec
Q psy5694          82 YVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        82 ~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      .|.|++.+|+| .|.|.+.|........+. .+.|.|..
T Consensus        84 ~I~~v~~~D~G-~Y~C~~~~~~~~~~~~~~-~~~l~V~~  120 (220)
T 1pz5_B           84 QMNNLRAEDTG-IYYCTRGGAVGAMDYWGQ-GTSVTVSS  120 (220)
T ss_dssp             EECSCCGGGCE-EEEEEEECTTSSEEEECC-CEEEEECS
T ss_pred             EEccCCHHHCE-EEEEEEecCCcccceECC-CEEEEEcc
Confidence            99999999997 999999997422212223 45777764

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.01  E-value=1e-09  Score=78.70  Aligned_cols=66  Identities=17%  Similarity=0.236  Sum_probs=52.5

Q ss_pred             eCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCcc---EEEeccCCCCCCcceEEEeecccCCe
Q psy5694          33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVFNATPNDGYKSYRCRTVNKITGE  106 (129)
Q Consensus        33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~---L~I~nv~~~D~g~~Y~C~a~N~ltge  106 (129)
                      .|..+.|.|.+.++++  .+.+.|++++..|.+    ++|+.+..+|.   |.|.+++.+|+| .|+|.+.|.. |.
T Consensus        16 ~~~~~~l~C~~~~~~p--~~~i~W~~~g~~i~~----~~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~~~n~~-~~   84 (212)
T 2r15_A           16 TAEGIQLYSFVTYYVE--DLKVNWSHNGSAIRY----SDRVKTGVTGEQIWLQINEPTPNDKG-KYVMELFDGK-TG   84 (212)
T ss_dssp             CSSEEEEEEEBSSCCS--SCEEEEEETTEECCC----CSSEEEEEETTEEEEEEESCCGGGCE-EEEEEEECSS-CE
T ss_pred             cCceEEEEEEEeccCC--CceEEEEECCEEccC----CCeEEEEEeCCEEEEEECCCCcccCE-EEEEEEecCC-cc
Confidence            4777788888877643  367999999988753    47887766554   999999999997 9999999976 44

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.01  E-value=1.4e-09  Score=78.58  Aligned_cols=87  Identities=15%  Similarity=0.194  Sum_probs=60.8

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eeeecc-----cCCCceEEEcc---CccEEEeccCCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYLN-----TDTGGKYVVLS---SGDLYVFNATPNDG   91 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i~~~-----~~~~~ry~vlp---sG~L~I~nv~~~D~   91 (129)
                      ++.. .|.+|++|.|.|.+.+.+   .+.+.|++++     ..+...     ....+||.+..   ++.|.|.+++.+|+
T Consensus         8 p~~~-~v~~G~~v~L~C~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   83 (213)
T 3r06_A            8 PSSL-PASLGDRVTINCQASQDI---SNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDI   83 (213)
T ss_dssp             CSEE-EECTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCEE-EecCCCcEEEEEEeCCCc---CceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcccC
Confidence            4455 889999999999998774   3568998842     111110     11357888764   34799999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEe
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      | .|+|.|.|.. +. ..+. ...|.|.
T Consensus        84 G-~Y~C~~~~~~-~~-~~~~-~~~l~V~  107 (213)
T 3r06_A           84 G-SYYCQQYYNY-PW-TFGP-GTKLEIK  107 (213)
T ss_dssp             S-EEEEEECSSS-SC-EECC-CEEEEEC
T ss_pred             E-EEEEecccCC-ce-EEcC-CceEEEe
Confidence            8 9999999875 32 2233 4567773

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=99.01  E-value=1.9e-09  Score=72.32  Aligned_cols=87  Identities=16%  Similarity=0.225  Sum_probs=60.1

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc----cCCCceEEEccC---ccEEEeccCCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN----TDTGGKYVVLSS---GDLYVFNATPNDG   91 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~----~~~~~ry~vlps---G~L~I~nv~~~D~   91 (129)
                      +.+. .|.+|.+|.|.|.+.+.+   .+.+.|++..     ..| ...    ....+||.+..+   ..|.|.|++.+|+
T Consensus         8 p~~~-~v~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds   83 (108)
T 1qfw_M            8 PKSM-SMSVGERVTLSCKASETV---DSFVSWYQQKPEQSPKLLIFGASNRFSGVPDRFTGSGSATDFTLTISSVQAEDF   83 (108)
T ss_dssp             CSCE-ECCTTCCEEEEEEESSCC---CSCEEEEEECTTSCCEEEECSSSCBCTTCCTTEECCBCSSEEEEEESSCCTTCC
T ss_pred             CCeE-EEcCCCCEEEEeeeCCCC---CcEEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEEcCCCEEEEEECCCChhhC
Confidence            4445 889999999999987655   2468998853     122 110    012468887643   3699999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEe
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      | .|.|.+.|.  +...-.+ ..+|.|+
T Consensus        84 G-~Y~C~~~~~--~~~~fg~-gT~l~V~  107 (108)
T 1qfw_M           84 A-DYHCGQTYN--HPYTFGG-GTKLEIK  107 (108)
T ss_dssp             S-EEEEEECSS--SSCEECC-CEEEECC
T ss_pred             E-EEEEEEccC--CceEECC-CEEEEEc
Confidence            8 999999986  2333333 5577764

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=99.01  E-value=1.2e-09  Score=73.54  Aligned_cols=87  Identities=17%  Similarity=0.259  Sum_probs=60.3

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc----cCCCceEEEcc---CccEEEeccCCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN----TDTGGKYVVLS---SGDLYVFNATPNDG   91 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~----~~~~~ry~vlp---sG~L~I~nv~~~D~   91 (129)
                      +.+. .|.+|.+|.|.|.+.+.+.   +.+.|++..     ..| ...    ....+||.+..   ++.|.|.|++.+|+
T Consensus        10 p~~~-~v~~G~~v~L~C~~~~~~~---~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~Ds   85 (109)
T 2q20_A           10 PSSL-SASVGDRVTITCQASQDIS---NYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDI   85 (109)
T ss_dssp             CSEE-EECTTCCEEEEEEESSCCT---TCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCEE-EecCCCcEEEEEeeccCCC---CcEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEeccCCEEEEEECCCChhhC
Confidence            4455 8999999999999976552   468998864     112 110    11257888754   34699999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEe
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      | .|.|.+.|.  +...-.. ..+|.|+
T Consensus        86 G-~Y~C~~~~~--~~~~fg~-gT~L~V~  109 (109)
T 2q20_A           86 A-TYYCQQYDN--LPYTFGQ-GTKLEIK  109 (109)
T ss_dssp             E-EEEEEECSS--SSCCBCC-CEEEEEC
T ss_pred             E-EEEEEEeeC--CcceECC-CEEEEEC
Confidence            7 999999985  2322233 5577763

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.01  E-value=1.8e-09  Score=81.45  Aligned_cols=95  Identities=13%  Similarity=0.078  Sum_probs=65.2

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eeee-c--------ccCCCceEEEcc-----CccEEEe
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIY-L--------NTDTGGKYVVLS-----SGDLYVF   84 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i~-~--------~~~~~~ry~vlp-----sG~L~I~   84 (129)
                      ++... .|.+|.+|.|.|.+.+.+.. .+.+.|++++     ..|. .        .....+||.+..     ++.|.|.
T Consensus         6 ~p~~~-~v~~G~~v~L~C~~~g~p~~-~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   83 (257)
T 1f3r_B            6 ESGPG-LVRPSETLSLTCTVSGFSLT-SFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMN   83 (257)
T ss_dssp             EECCS-EECTTSEEEEEEEEESSCTT-TSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEE
T ss_pred             CCCCc-cccCCceEEEEEEEecccCC-CccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEEC
Confidence            34555 78999999999999766421 2568999862     1121 0        011357898864     2489999


Q ss_pred             ccCCCCCCcceEEEeecccC------CeEEecccceEEEEecCC
Q psy5694          85 NATPNDGYKSYRCRTVNKIT------GESQASVFQTRLSITGKL  122 (129)
Q Consensus        85 nv~~~D~g~~Y~C~a~N~lt------ge~k~S~~~~~L~V~ep~  122 (129)
                      +++.+|+| .|.|.|.|..+      +....+. ...|.|.++.
T Consensus        84 ~v~~~DsG-~Y~C~a~n~~g~~~~~~~~~~~~~-~~~l~V~~~~  125 (257)
T 1f3r_B           84 SLQTDDTG-TYYCTRDLYGGYPLGFWYFDFWGP-GTMVTVSSGG  125 (257)
T ss_dssp             SCCTTCCE-EEEEEEESSSSCCSSCCCEEEECC-CEEEEECSSC
T ss_pred             CCCcccCE-EEEEEEcccccCccccccccccCC-ceEEEEEeCC
Confidence            99999997 99999999852      1322333 5688888753

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.01  E-value=7.7e-10  Score=82.79  Aligned_cols=93  Identities=18%  Similarity=0.126  Sum_probs=63.6

Q ss_pred             eEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc----cCCCceEEEccC---ccEEEeccCC
Q psy5694          22 EINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN----TDTGGKYVVLSS---GDLYVFNATP   88 (129)
Q Consensus        22 ~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~----~~~~~ry~vlps---G~L~I~nv~~   88 (129)
                      ...+.+. .|.+|++|.|.|.+.+.+.   +.+.|++++     ..+ ...    ....+||.+..+   +.|.|.+++.
T Consensus         5 ~~~p~~~-~v~~G~~v~L~C~~~~~~~---~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   80 (242)
T 2znx_A            5 TQSPATL-SVTPGNSVSLSCRASQSIG---NNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVET   80 (242)
T ss_dssp             EEECSEE-EECTTCCEEEEEEESSCCT---TCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred             EEcCCeE-EEcCCCcEEEEEEeCCCCC---ceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCCh
Confidence            3445555 8999999999999977653   568999853     112 110    113578888643   3699999999


Q ss_pred             CCCCcceEEEeecccCCeEEecccceEEEEecCC
Q psy5694          89 NDGYKSYRCRTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      +|+| .|.|.+.|.. +. ..+. ...|.|.++.
T Consensus        81 ~D~G-~Y~C~~~n~~-~~-~~~~-~~~L~V~~~~  110 (242)
T 2znx_A           81 EDFG-MYFCQQSNSX-PY-TFGG-GTKLEITGGG  110 (242)
T ss_dssp             GGCE-EEEEEECSSS-SC-EECC-CEEEEEC---
T ss_pred             HHCE-EEEEeEecCC-ce-EECC-CEEEEEcCCC
Confidence            9997 9999999974 22 2333 5678887654

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.00  E-value=1.4e-09  Score=89.05  Aligned_cols=82  Identities=12%  Similarity=0.122  Sum_probs=56.4

Q ss_pred             eeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc--cCCCceEEEccCccEEEeccCCCCCCcceEEEeecccC
Q psy5694          27 YEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN--TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT  104 (129)
Q Consensus        27 ~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~--~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~lt  104 (129)
                      +. .|.+|+++.|+|.+.+.|+   +.+.|++++..+...  .+.+.|+.    ..|.|.+|+.+|+| .|+|.|.|.. 
T Consensus        57 ~v-~V~~G~~v~L~C~v~g~P~---p~i~W~~~~~~l~~~~~~~~~~~~~----~sL~I~~v~~~D~G-~Y~C~a~N~~-  126 (423)
T 3qs7_E           57 AV-EVDVSASITLQVLVDAPGN---ISCLWVFKHSSLNCQPHFDLQNRGV----VSMVILKMTETQAG-EYLLFIQSEA-  126 (423)
T ss_dssp             EE-EECSSCCEEEEEECSCCSS---CEEEEEETTEEECCCCBC-----CE----EEEEESSCCSSSCS-EEEEEEEC---
T ss_pred             cE-EEecCCcEEEEEEEEcCCC---CeEEEEECCCccCccceeccccceE----EEEEEeecCcccCE-EEEEEEEcCC-
Confidence            44 8899999999999988663   678999988655321  11123332    25999999999998 9999999987 


Q ss_pred             CeEEecccceEEEEecC
Q psy5694         105 GESQASVFQTRLSITGK  121 (129)
Q Consensus       105 ge~k~S~~~~~L~V~ep  121 (129)
                      |+..  . ...|.|..+
T Consensus       127 g~~~--~-~~~l~V~~~  140 (423)
T 3qs7_E          127 TNYT--I-LFTVSIRNT  140 (423)
T ss_dssp             CEEE--E-EEEEEEC--
T ss_pred             CcEE--E-EEEEEEecC
Confidence            5532  2 457777743

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.00  E-value=6.3e-10  Score=82.73  Aligned_cols=95  Identities=15%  Similarity=0.155  Sum_probs=64.3

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeec--ceeeec-------------ccCCCceEEEccCc-----c
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD--DVNIYL-------------NTDTGGKYVVLSSG-----D   80 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d--~~~i~~-------------~~~~~~ry~vlpsG-----~   80 (129)
                      +...+... .+.+|++|.|.|.+.+.+.. .+.+.|+++  +..+..             .....+||.+..++     .
T Consensus       134 ~~~~~~~~-~v~~G~~v~L~C~~~~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  211 (250)
T 3esu_F          134 QLQQSGPE-LVKPGASVKISCKDSGYAFS-SSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAY  211 (250)
T ss_dssp             -CEECCCE-EECTTCCEEEEEECCSTTGG-GSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEE
T ss_pred             EEecCCce-EEcCCceEEEEEEecCCccc-CCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEE
Confidence            33445555 78999999999999765532 357899997  322100             01224788887554     5


Q ss_pred             EEEeccCCCCCCcceEEEeeccc-CCeEEecccceEEEEe
Q psy5694          81 LYVFNATPNDGYKSYRCRTVNKI-TGESQASVFQTRLSIT  119 (129)
Q Consensus        81 L~I~nv~~~D~g~~Y~C~a~N~l-tge~k~S~~~~~L~V~  119 (129)
                      |.|.+++.+|+| .|.|.+.|.. .++..... ..+|.|+
T Consensus       212 L~I~~v~~~DsG-~Y~C~~~~~~~~~~~~~g~-gt~L~V~  249 (250)
T 3esu_F          212 MQLSSLTSVDSA-VYFCARSGLLRYAMDYWGQ-GTSVTVS  249 (250)
T ss_dssp             EEECSCCGGGCE-EEEEEEECSSTTCCCEECC-CEEEEEC
T ss_pred             EEECCCCcccCE-EEEEEEecCCCccHhhcCC-CcceEec
Confidence            999999999997 9999999821 13333343 6688875

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.00  E-value=2.1e-09  Score=79.57  Aligned_cols=93  Identities=13%  Similarity=0.168  Sum_probs=63.2

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e---ee-ecc---------cCCCceEEEcc-----CccEEE
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NI-YLN---------TDTGGKYVVLS-----SGDLYV   83 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~---~i-~~~---------~~~~~ry~vlp-----sG~L~I   83 (129)
                      ++... .|.+|.+|.|.|.+.+.+.. .+.+.|++++  .   .| ...         ....+||.+..     ++.|.|
T Consensus         6 qp~~~-~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   83 (225)
T 1op3_H            6 ESGGG-LVKAGGSLILSCGVSNFRIS-AHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQM   83 (225)
T ss_dssp             EECCE-EEETTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred             cCCCe-EecCCCCEEEEEEecCcccC-CceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEE
Confidence            45555 89999999999998765422 2568998853  1   11 100         01357888864     468999


Q ss_pred             eccCCCCCCcceEEEeecccCC----eE-EecccceEEEEec
Q psy5694          84 FNATPNDGYKSYRCRTVNKITG----ES-QASVFQTRLSITG  120 (129)
Q Consensus        84 ~nv~~~D~g~~Y~C~a~N~ltg----e~-k~S~~~~~L~V~e  120 (129)
                      +|++.+|+| .|.|.+.|..++    .. ..+. ...|.|..
T Consensus        84 ~~v~~~D~G-~Y~C~~~~~~~~~~~~~~~~~~~-~~~L~V~~  123 (225)
T 1op3_H           84 HKMRVEDTA-IYYCARKGSDRLSDNDPFDAWGP-GTVVTVSP  123 (225)
T ss_dssp             CSCCGGGCE-EEEEEEECCSSCCSSCCEEEECC-CEEEEEES
T ss_pred             CCCChhhCE-EEEEEEecCCCccccccceeecC-CEEEeccc
Confidence            999999997 999999997520    21 2233 45888876

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.00  E-value=2.3e-09  Score=79.42  Aligned_cols=90  Identities=16%  Similarity=0.156  Sum_probs=58.1

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeec--------------ceeeecccCCCceEEEccCc----cEEEec
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD--------------DVNIYLNTDTGGKYVVLSSG----DLYVFN   85 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d--------------~~~i~~~~~~~~ry~vlpsG----~L~I~n   85 (129)
                      .++.. .|.+|++|+|.|. .+.+   .+.+.|++.              +..+......++||.+..++    .|.|+|
T Consensus         8 ~p~~v-~v~~G~~v~L~C~-~~~~---~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~   82 (245)
T 4ei6_B            8 IPSHQ-IIDMGQMVTLNCD-PVSN---HLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQP   82 (245)
T ss_dssp             ECSEE-EEETTCCEEEEEE-CCTT---CCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECS
T ss_pred             CCceE-EecCCCCEEEEEE-cCCC---CCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECC
Confidence            34555 8999999999994 4433   357899882              11111110012788887533    799999


Q ss_pred             cCCCCCCcceEEEeecccCC-eEEecccceEEEEec
Q psy5694          86 ATPNDGYKSYRCRTVNKITG-ESQASVFQTRLSITG  120 (129)
Q Consensus        86 v~~~D~g~~Y~C~a~N~ltg-e~k~S~~~~~L~V~e  120 (129)
                      |+.+|+| .|+|.+.+...+ ....+. ...|.|.+
T Consensus        83 v~~~D~G-~Y~C~~~~~~~~~~~~~~~-~~~l~V~~  116 (245)
T 4ei6_B           83 TALEDSA-VYFCASSFWGAYAEQFFGP-GTRLTVLE  116 (245)
T ss_dssp             CCGGGCE-EEEEEEECSSTTCCCEECC-CEEEEEES
T ss_pred             CCHhHCE-EEEEEEccCCCcceEEEcC-CcEEEEec
Confidence            9999997 999999964211 112233 55777764

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.00  E-value=1.9e-09  Score=82.46  Aligned_cols=98  Identities=19%  Similarity=0.283  Sum_probs=63.6

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCC-CceeEeEEeecc--e--eee---------cccCCCceEEEc----cCccEE
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMS-EYIIVTSWIQDD--V--NIY---------LNTDTGGKYVVL----SSGDLY   82 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~-~~v~v~sW~~d~--~--~i~---------~~~~~~~ry~vl----psG~L~   82 (129)
                      +.+.+...+.|.+|+++.|.|.+.+..+ ...+.+.|++++  .  .+.         ......+|+.+.    .++.|.
T Consensus        16 ~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~   95 (331)
T 3u83_A           16 QVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIR   95 (331)
T ss_dssp             -----CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCEE
T ss_pred             ceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceEE
Confidence            3334444448999999999999876522 235679999964  1  110         001235788775    478899


Q ss_pred             EeccCCCCCCcceEEEeecccCCeEEecccceEEEEecCC
Q psy5694          83 VFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        83 I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      |.+++.+|+| .|+|.+.+...|.  .+. ...|.|..++
T Consensus        96 I~~v~~~D~G-~Y~C~~~~~~~~~--~~~-~~~l~V~~~p  131 (331)
T 3u83_A           96 LSRLELEDEG-VYICEFATFPTGN--RES-QLNLTVMAKP  131 (331)
T ss_dssp             ECSCCGGGCE-EEEEEEEEETTEE--EEE-EEEEEEEBCC
T ss_pred             EcccCcccCc-EEEEEEEecCCCc--cEE-EEEEEEecCC
Confidence            9999999997 9999855443354  233 5577777653

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.00  E-value=2.5e-09  Score=77.37  Aligned_cols=83  Identities=16%  Similarity=0.224  Sum_probs=58.7

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e---eeecc-----cCCCceEEEcc---CccEEEeccCCCCCCcceE
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NIYLN-----TDTGGKYVVLS---SGDLYVFNATPNDGYKSYR   96 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~---~i~~~-----~~~~~ry~vlp---sG~L~I~nv~~~D~g~~Y~   96 (129)
                      .|.+|.+|.|.|.+.  +   .+.+.|++++  .   .+...     ....+||.+..   ++.|.|+|++.+|+| .|+
T Consensus        11 ~v~~G~~v~L~C~~~--~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G-~Y~   84 (211)
T 3tv3_L           11 SGSPGQSITISCTGT--S---NNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEA-VYY   84 (211)
T ss_dssp             EECTTCEEEEEEECC--C---SSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCE-EEE
T ss_pred             EEcCCCCEEEEEEEC--C---CCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCE-EEE
Confidence            889999999999997  2   3568999842  1   11110     01346887543   456999999999997 999


Q ss_pred             EEeecccCCeEEecccceEEEEec
Q psy5694          97 CRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        97 C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      |.+.|.. |....+. ...|.|..
T Consensus        85 C~~~~~~-~~~~~~~-~~~l~V~~  106 (211)
T 3tv3_L           85 CGSLVGN-WDVIFGG-GTKLTVLG  106 (211)
T ss_dssp             EEEEETT-TEEEECC-CEEEEECC
T ss_pred             EEEecCC-CceeECC-CceEEEeC
Confidence            9999986 4223344 56888874

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.00  E-value=7.4e-11  Score=86.76  Aligned_cols=74  Identities=14%  Similarity=0.253  Sum_probs=42.1

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--ee---e-ec----ccCCCceEEEccCc---cEEEeccCCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VN---I-YL----NTDTGGKYVVLSSG---DLYVFNATPNDG   91 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~~---i-~~----~~~~~~ry~vlpsG---~L~I~nv~~~D~   91 (129)
                      +.+. .|.+|++|.|.|.+.+.+.   +.+.|++++  ..   + +.    .....+||.+..+|   .|.|.+++.+|+
T Consensus        30 p~~~-~v~~G~~v~L~C~~~~~~~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~  105 (233)
T 3bqu_C           30 PASL-SMSIGEKVTIRCITSTDID---DDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSEDV  105 (233)
T ss_dssp             CSBC--------CCEEEEEEEEES---SCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CCCC
T ss_pred             CCeE-EEecCCCEEEEEecCCcCC---CeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHHHC
Confidence            5555 8999999999999876553   358998853  11   1 10    01124677766444   799999999999


Q ss_pred             CcceEEEeeccc
Q psy5694          92 YKSYRCRTVNKI  103 (129)
Q Consensus        92 g~~Y~C~a~N~l  103 (129)
                      | .|+|.+.|..
T Consensus       106 G-~Y~C~~~~~~  116 (233)
T 3bqu_C          106 A-DYYCLQSDNL  116 (233)
T ss_dssp             S-EEEEEECSSS
T ss_pred             E-EEEEEEecCC
Confidence            7 9999999875

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.00  E-value=5.5e-10  Score=82.03  Aligned_cols=90  Identities=22%  Similarity=0.286  Sum_probs=61.4

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceee-----ec---------------------ccCCCceEEEcc--CccE
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI-----YL---------------------NTDTGGKYVVLS--SGDL   81 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i-----~~---------------------~~~~~~ry~vlp--sG~L   81 (129)
                      .|.+|++|.|.|.+.+......+.+.|++++..+     ..                     .....+|+.+..  ++.|
T Consensus        13 ~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~L   92 (250)
T 2fbo_J           13 EVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTL   92 (250)
T ss_dssp             EECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCTTSCCE
T ss_pred             EEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccCCcceE
Confidence            8899999999999865111224679999987321     11                     012346676655  4689


Q ss_pred             EEeccCCCCCCcceEEEeecccCCeE--EecccceEEEEecC
Q psy5694          82 YVFNATPNDGYKSYRCRTVNKITGES--QASVFQTRLSITGK  121 (129)
Q Consensus        82 ~I~nv~~~D~g~~Y~C~a~N~ltge~--k~S~~~~~L~V~ep  121 (129)
                      .|.+++.+|+| .|+|.+.|......  ..+. ...|.|.++
T Consensus        93 ~I~~v~~~D~G-~Y~C~~~~~~~~~~~~~~~~-~~~l~V~~~  132 (250)
T 2fbo_J           93 RLTHVHPQDGG-RYWCQVAQWSIRTEFGLDAK-SVVLKVTGH  132 (250)
T ss_dssp             EECSCCGGGCE-EEEEEEECTTCCSGGGEEEE-EEEEEETTT
T ss_pred             EEeeCChhhCe-EEEEEeccCccCCcccccce-eEEEEEecc
Confidence            99999999997 99999999763210  0122 557888765

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.00  E-value=7.3e-10  Score=92.06  Aligned_cols=86  Identities=19%  Similarity=0.299  Sum_probs=64.5

Q ss_pred             EEEeCCeEEEEeeC-CCCCCCceeEeEEeecceee--e----c--ccCCCceEEEccCccEEEeccCCCCCCcceEEEee
Q psy5694          30 NVILGNTAVLRCQI-PSYMSEYIIVTSWIQDDVNI--Y----L--NTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        30 ~V~~GntAvL~C~v-p~~~~~~v~v~sW~~d~~~i--~----~--~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      .+..|++++|.|.+ .+.+   .+.++|++++..+  .    +  .....+|+.+.++|.|.|.|++.+|+| .|+|++.
T Consensus       377 ~~~~G~~v~L~C~~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G-~Y~C~~~  452 (581)
T 3o3u_N          377 TARIGEPLVLKCKGAPKKP---PQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEG-IFRCQAM  452 (581)
T ss_dssp             EEETTSCEEECCTTCCSSS---SCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCE-EEEEEEE
T ss_pred             ceecCCcEEEeeeecCCCC---CceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCe-EEEEEEE
Confidence            88999999999999 5544   3579999987422  1    0  001256888999999999999999997 9999999


Q ss_pred             cccCCeEEecccceEEEEecCC
Q psy5694         101 NKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus       101 N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      |.. |... +. ...|.|.++.
T Consensus       453 n~~-~~~~-~~-~~~l~V~~~~  471 (581)
T 3o3u_N          453 NRN-GKET-KS-NYRVRVYQIP  471 (581)
T ss_dssp             CTT-SCEE-EE-EEEEEEEBCC
T ss_pred             cCC-Ccee-EE-EEEEEEEcCC
Confidence            987 4421 22 5688887643

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=98.99  E-value=1.5e-09  Score=72.61  Aligned_cols=72  Identities=22%  Similarity=0.364  Sum_probs=51.7

Q ss_pred             eEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-e-------eeecc-----cCCCceEEEc-----cCccEEEeccCCCC
Q psy5694          29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-V-------NIYLN-----TDTGGKYVVL-----SSGDLYVFNATPND   90 (129)
Q Consensus        29 ~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-~-------~i~~~-----~~~~~ry~vl-----psG~L~I~nv~~~D   90 (129)
                      +.|.+|++|.|.|.+.....  ...+.|.+.. .       .+...     ....+||.+.     .++.|.|+|++.+|
T Consensus         7 v~~~~G~~v~L~C~~~~~~~--~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D   84 (116)
T 2or8_A            7 VKGVVGHPVTLPCTYSTYRG--ITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVESD   84 (116)
T ss_dssp             EEEETTSCEEECCBCCCTTC--CCCEEEEESCCCSSSCTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCGGG
T ss_pred             EEEEeCCcEEEEEEeeCCCC--CcEEEEEEECCCCCCceEEEEEeCCcccCcCCCCeEEEecCCCCCeEEEEECCCCccc
Confidence            38899999999999864322  2358999865 1       12111     1135788763     24679999999999


Q ss_pred             CCcceEEEeeccc
Q psy5694          91 GYKSYRCRTVNKI  103 (129)
Q Consensus        91 ~g~~Y~C~a~N~l  103 (129)
                      +| .|.|.+.|..
T Consensus        85 sG-~Y~C~v~~~~   96 (116)
T 2or8_A           85 SG-LYCCRVEIPG   96 (116)
T ss_dssp             CE-EEEEEECCSS
T ss_pred             CE-EEEEEEEcCC
Confidence            97 9999999864

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=98.99  E-value=1.1e-09  Score=80.79  Aligned_cols=80  Identities=20%  Similarity=0.281  Sum_probs=62.2

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEee
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      +...+.+. .|.+|+++.|.|.+.+.+++  ..+.|++++..|..           .++.|.|.+++.+|+| .|+|++.
T Consensus         4 i~~~p~~~-~v~~G~~v~l~C~~~~~~~~--~~~~W~~~g~~~~~-----------~~~~l~i~~~~~~d~G-~Y~C~~~   68 (262)
T 3rjd_A            4 ITLQPPWV-SVFQEETVTLHCEVLHLPGS--SSTQWFLNGTATQT-----------STPSYRITSASVNDSG-EYRCQRG   68 (262)
T ss_dssp             EEESSCCS-EEETTCCEEEEEECSSCCCT--TCEEEEETTEECSC-----------CSSEEEESSCCGGGCE-EEEEEES
T ss_pred             EecCCCcE-EeeCCCeEEEEEECCCCCCC--ceEEEEECCEEeec-----------cCCeEEEecCCcccCe-EEEEEEe
Confidence            45667777 89999999999999877643  26899999877632           1678999999999997 9999999


Q ss_pred             cccCCeEEecccceEEEEecC
Q psy5694         101 NKITGESQASVFQTRLSITGK  121 (129)
Q Consensus       101 N~ltge~k~S~~~~~L~V~ep  121 (129)
                      |...     |. ...|.|..+
T Consensus        69 ~~~~-----s~-~~~l~v~~~   83 (262)
T 3rjd_A           69 LSGR-----SD-PIQLEIHRG   83 (262)
T ss_dssp             SSCC-----CC-CEEEEEECS
T ss_pred             cCCc-----cc-cEEEEEecc
Confidence            8642     22 557777654

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=98.99  E-value=1.1e-09  Score=77.81  Aligned_cols=80  Identities=18%  Similarity=0.324  Sum_probs=59.6

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEee
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      +...+... .+.+|+++.|.|.+.+.+.+  ..++|++++..+..           .++.|.|.+++.+|+| .|+|.+.
T Consensus         7 i~~~p~~~-~v~~G~~v~L~C~~~~~~~~--~~i~W~~~~~~~~~-----------~~~~L~i~~v~~~d~G-~Y~C~~~   71 (176)
T 1f2q_A            7 VSLNPPWN-RIFKGENVTLTCNGNNFFEV--SSTKWFHNGSLSEE-----------TNSSLNIVNAKFEDSG-EYKCQHQ   71 (176)
T ss_dssp             CEEESSCS-EEETTCCEEEECCTTCC------CCEEEETTEECSC-----------CSSEEEECSCCGGGCE-EEEEECT
T ss_pred             EEcCCCCc-ceecCCcEEEEEeCCCCCCc--ceEEEEECCeECCC-----------CceEEEEeccceecCE-EEEEEcC
Confidence            44556666 89999999999999887642  34799999866631           2689999999999997 9999999


Q ss_pred             cccCCeEEecccceEEEEecC
Q psy5694         101 NKITGESQASVFQTRLSITGK  121 (129)
Q Consensus       101 N~ltge~k~S~~~~~L~V~ep  121 (129)
                      |.. +    +. ...|.|..+
T Consensus        72 ~~~-~----s~-~~~l~V~~~   86 (176)
T 1f2q_A           72 QVN-E----SE-PVYLEVFSD   86 (176)
T ss_dssp             TSS-C----CC-CEEEEEECS
T ss_pred             Ccc-c----cc-cEEEEEeCc
Confidence            854 2    33 557777633

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=98.99  E-value=1.7e-09  Score=79.53  Aligned_cols=93  Identities=13%  Similarity=0.099  Sum_probs=62.2

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e---e-eecc--------cCCCceEEEcc--C---ccEEEe
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---N-IYLN--------TDTGGKYVVLS--S---GDLYVF   84 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~---~-i~~~--------~~~~~ry~vlp--s---G~L~I~   84 (129)
                      +++.. .|.+|.+|.|.|.+.+.+.+ .+.+.|++++  .   . +...        ....+||.+..  +   +.|.|+
T Consensus         6 qp~~~-~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   83 (215)
T 1c5d_H            6 ESGPG-LVQPSQTLSLTCTVSGFPLT-TNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMN   83 (215)
T ss_dssp             EECCC-EECTTCCEEEEEEECSSCTT-SCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEES
T ss_pred             cCCCe-eecCCCcEEEEEEECCCcCC-CCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEEC
Confidence            35555 88999999999999765422 2568998863  1   1 1110        01257898863  2   379999


Q ss_pred             ccCCCCCCcceEEEeecccCCeEEecccceEEEEec
Q psy5694          85 NATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        85 nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      |++.+|+| .|.|.+.|..++....+. .+.|.|.+
T Consensus        84 ~v~~~D~G-~Y~C~~~~~~~~~~~~~~-~~~L~V~~  117 (215)
T 1c5d_H           84 SLQTEDTA-IYFCTREDGWNYFDYWGP-GTMVTVSS  117 (215)
T ss_dssp             SCCGGGCE-EEEEEECCSSSCSCCBCC-CEEEEECS
T ss_pred             CCCcccCE-EEEEEEecCCcccceEcC-CEEEEecC
Confidence            99999997 999999986421111122 45788874

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=98.98  E-value=9.6e-10  Score=82.91  Aligned_cols=93  Identities=17%  Similarity=0.142  Sum_probs=64.0

Q ss_pred             eEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eeee-c--c---cCCCceEEEc-----cCccEEEec
Q psy5694          22 EINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIY-L--N---TDTGGKYVVL-----SSGDLYVFN   85 (129)
Q Consensus        22 ~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i~-~--~---~~~~~ry~vl-----psG~L~I~n   85 (129)
                      ...+.+. .|.+|++|.|.|.+.+.+   .+.+.|++..     ..|. .  .   ...++||.+.     .++.|.|++
T Consensus         7 ~q~p~~~-~v~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~   82 (256)
T 3tf7_C            7 TQPDARV-TVSEGASLQLRCKYSYSA---TPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKAS   82 (256)
T ss_dssp             ECSCSEE-EEETTSCEEECCEEECSS---CCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESS
T ss_pred             EecCceE-EecCCCeEEEEEEeCCCC---CceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECC
Confidence            3345555 899999999999997664   3678998832     1111 0  0   0125678772     345699999


Q ss_pred             cCCCCCCcceEEEeecccCCeE-EecccceEEEEec
Q psy5694          86 ATPNDGYKSYRCRTVNKITGES-QASVFQTRLSITG  120 (129)
Q Consensus        86 v~~~D~g~~Y~C~a~N~ltge~-k~S~~~~~L~V~e  120 (129)
                      ++.+|+| .|.|.+.|..++.. ..+. ..+|.|.+
T Consensus        83 v~~~DsG-~Y~C~~~~~~~~~~~~~~~-~~~l~V~~  116 (256)
T 3tf7_C           83 VHRSDSA-VYFCAVSAKGTGSKLSFGK-GAKLTVSP  116 (256)
T ss_dssp             CCGGGCS-EEEEEEECTTCTTCEEECC-CEEEEEEC
T ss_pred             CCcccCE-EEEEEEecCCCccceEECC-CeEEEEeC
Confidence            9999998 99999999764322 2333 56888876

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=98.98  E-value=2.3e-09  Score=79.04  Aligned_cols=79  Identities=15%  Similarity=0.225  Sum_probs=59.6

Q ss_pred             EEEeCCeEEEEeeCCCCCC--CceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeE
Q psy5694          30 NVILGNTAVLRCQIPSYMS--EYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGES  107 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~--~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~  107 (129)
                      .+..|+++.|.|.+.+.|.  +..-.++|.+++..+...         ..++.|.|.+++.+|+| .|+|.|.|..+...
T Consensus       181 ~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~---------~~~~~L~i~~v~~~d~G-~Y~C~a~n~~G~~~  250 (262)
T 3rjd_A          181 PLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR---------NTSSEYQILTARREDSG-LYWCEAATEDGNVL  250 (262)
T ss_dssp             SEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEEE---------ESCCEEEESSCCGGGCE-EEEEEEEETTSSCE
T ss_pred             eecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEeccc---------CCCceEEEEEechhhCe-EEEEEEEcccCceE
Confidence            5889999999999988764  222236899998766321         24578999999999997 99999999995545


Q ss_pred             EecccceEEEEe
Q psy5694         108 QASVFQTRLSIT  119 (129)
Q Consensus       108 k~S~~~~~L~V~  119 (129)
                      +.|. ...|.|+
T Consensus       251 ~~s~-~~~l~V~  261 (262)
T 3rjd_A          251 KRSP-ELELQVL  261 (262)
T ss_dssp             EECC-CEEECEE
T ss_pred             EecC-CeEEEEe
Confidence            6666 6666664

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=98.98  E-value=2.4e-09  Score=81.79  Aligned_cols=94  Identities=17%  Similarity=0.235  Sum_probs=63.6

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e---ee-ec---------ccCCCceEEEcc----CccE
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NI-YL---------NTDTGGKYVVLS----SGDL   81 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~---~i-~~---------~~~~~~ry~vlp----sG~L   81 (129)
                      +...++.. .|.+|.+|.|.|.+.+.+   .+.+.|++++  .   .| +.         .....+||.+..    ++.|
T Consensus        27 v~~~p~~v-~v~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL  102 (279)
T 2wbj_D           27 VSQHPSWV-ISKSGTSVKIECRSLDFQ---ATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTL  102 (279)
T ss_dssp             EEEECSEE-EEETTSCEEEEEEESSSC---EEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEE
T ss_pred             EEeCCCeE-EecCCCeEEEEEEeCCCC---CCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEE
Confidence            34445556 899999999999996544   4679999864  1   11 10         011257888864    3479


Q ss_pred             EEeccCCCCCCcceEEEeecccC---CeEEecccceEEEEec
Q psy5694          82 YVFNATPNDGYKSYRCRTVNKIT---GESQASVFQTRLSITG  120 (129)
Q Consensus        82 ~I~nv~~~D~g~~Y~C~a~N~lt---ge~k~S~~~~~L~V~e  120 (129)
                      .|.|++.+|+| .|.|.+.|...   +....+. ...|.|..
T Consensus       103 ~I~~v~~~D~G-~Y~C~~~~~~~~~~~~~~~~~-~~~l~V~~  142 (279)
T 2wbj_D          103 TVTSAHPEDSS-FYICSARDLTSGANNEQFFGP-GTRLTVTE  142 (279)
T ss_dssp             EESSCCGGGCE-EEEEEEEETTCBTSCCEEECC-CEEEEEES
T ss_pred             EEccCCccCCE-EEEEEEcccccCCccceeeCC-CEEEEEec
Confidence            99999999997 99999999431   1112233 45777775

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=98.98  E-value=2.4e-09  Score=78.86  Aligned_cols=91  Identities=20%  Similarity=0.200  Sum_probs=59.4

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e---eee-c-------ccCCCceEEEcc----CccEEEecc
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NIY-L-------NTDTGGKYVVLS----SGDLYVFNA   86 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~---~i~-~-------~~~~~~ry~vlp----sG~L~I~nv   86 (129)
                      .+.+. .|.+|++|.|.|. .+.+   .+.+.|++++  .   .|. .       .....+||.+..    ++.|.|.++
T Consensus         6 ~p~~~-~v~~G~~v~L~C~-~~~~---~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v   80 (238)
T 2p1y_A            6 SPRNK-VAVTGGKVTLSCN-QTNN---HNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELA   80 (238)
T ss_dssp             ECSEE-EEETTCCEEEEEE-ECSC---CSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSC
T ss_pred             Cccce-EEeCCCEEEEEee-cCCC---CccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecC
Confidence            34555 8999999999999 4444   3679999962  1   111 0       012256887763    457999999


Q ss_pred             CCCCCCcceEEEeecccCC--eEEecccceEEEEecC
Q psy5694          87 TPNDGYKSYRCRTVNKITG--ESQASVFQTRLSITGK  121 (129)
Q Consensus        87 ~~~D~g~~Y~C~a~N~ltg--e~k~S~~~~~L~V~ep  121 (129)
                      +.+|+| .|+|.+.|..+.  ....+. ...|.|.++
T Consensus        81 ~~~DsG-~Y~C~~~~~~g~~~~~~~~~-~~~l~V~~~  115 (238)
T 2p1y_A           81 TPSQTS-VYFCASGDLGQTNERLFFGH-GTKLSVLGS  115 (238)
T ss_dssp             CGGGCE-EEEEEEEC------CEEECC-CEEEEEECC
T ss_pred             CcccCe-eEEEEEEeCCCccccceeCC-CeEEEEecc
Confidence            999997 999999997521  112222 457777654

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=98.98  E-value=9.2e-10  Score=80.00  Aligned_cols=89  Identities=16%  Similarity=0.160  Sum_probs=60.1

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--ee---e-ecc--------cCCCceEEEccC-----ccEEEe
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VN---I-YLN--------TDTGGKYVVLSS-----GDLYVF   84 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~~---i-~~~--------~~~~~ry~vlps-----G~L~I~   84 (129)
                      +++.. .|.+|++|.|.|.+.+.+.+ .+.+.|++++  ..   | ...        ....+|+.+..+     +.|.|+
T Consensus         6 ~p~~~-~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   83 (210)
T 3d9a_H            6 ESGPS-LVKPSQTLSLTCSVTGDSIT-SDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLN   83 (210)
T ss_dssp             EESCS-EECTTSCEEEEEEEESSCGG-GSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             cCCCE-EecCCCcEEEEEEEecccCC-CCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEEC
Confidence            35555 88999999999999765422 2568998863  11   1 110        012478887642     389999


Q ss_pred             ccCCCCCCcceEEEeecccCCeEEecccceEEEEec
Q psy5694          85 NATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        85 nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      ||+.+|+| .|+|.+.|..    ..+. ...|.|..
T Consensus        84 ~v~~~D~G-~Y~C~~~~~~----~~~~-~~~l~V~~  113 (210)
T 3d9a_H           84 SVTTEDTA-TYYCANWDGD----YWGQ-GTLVTVSA  113 (210)
T ss_dssp             SCCGGGCE-EEEEEETTSS----CBCC-CEEEEECC
T ss_pred             CCCcccCE-EEEEEEecCc----cccc-ceEEEecc
Confidence            99999997 9999999963    1122 34666663

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=98.98  E-value=1.4e-09  Score=89.93  Aligned_cols=93  Identities=15%  Similarity=0.262  Sum_probs=66.5

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeeccee-----eecc-----cCCCceEEEcc---Cc--cEEEeccCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVN-----IYLN-----TDTGGKYVVLS---SG--DLYVFNATPN   89 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~-----i~~~-----~~~~~ry~vlp---sG--~L~I~nv~~~   89 (129)
                      +++. .|.+|+++.|.|.+.+.+......+.|++++..     |..+     ....+|+.+..   +|  .|.|.+++.+
T Consensus         7 P~~v-~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~   85 (585)
T 2ocw_A            7 PEEV-NSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD   85 (585)
T ss_pred             ccee-EEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCcc
Confidence            4455 899999999999998775432346899998732     2211     11246887753   45  4999999999


Q ss_pred             CCCcceEEEeecccCCeEEecccceEEEEecCCC
Q psy5694          90 DGYKSYRCRTVNKITGESQASVFQTRLSITGKLK  123 (129)
Q Consensus        90 D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~~  123 (129)
                      |+| .|+|+|.|..++.   +. .+.|.|.+++.
T Consensus        86 D~G-~Y~C~~~n~~~~~---~~-~~~l~V~~~p~  114 (585)
T 2ocw_A           86 DSG-RYKCGLGINSRGL---SF-DVSLEVSQGPG  114 (585)
T ss_pred             cCE-EEEEEcccCCCCc---eE-EEEEEEecCcc
Confidence            997 9999999987432   33 56888876643

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=98.98  E-value=2.6e-09  Score=74.66  Aligned_cols=79  Identities=22%  Similarity=0.303  Sum_probs=59.9

Q ss_pred             eEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeec
Q psy5694          22 EINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVN  101 (129)
Q Consensus        22 ~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N  101 (129)
                      ...+... .+.+|+++.|.|.+.+.++.  +.++|++++..|..           .++.|.|.+++.+|+| .|+|.+.|
T Consensus         8 ~~~p~~~-~v~~G~~v~l~C~~~~~p~~--~~~~W~~~g~~~~~-----------~~~~~~~~~~~~~d~G-~Y~C~~~~   72 (170)
T 3ry4_A            8 KLEPPWI-NVLQEDSVTLTCQGARSPES--DSIQWFHNGNLIPT-----------HTQPSYRFKANNNDSG-EYTCQTGQ   72 (170)
T ss_dssp             EEESCCS-EEETTCEEEEEEESCCCSSS--SCEEEEETTEECTT-----------CCSSEEEEECCGGGCE-EEEEEETT
T ss_pred             EeCCCCe-EEECCCcEEEEEEecCCCCc--ceEEEEECCeEccc-----------CccceEEEecccccCe-EEEEEEeC
Confidence            3455555 78999999999999887532  46899999877632           1467889999999998 99999997


Q ss_pred             ccCCeEEecccceEEEEecC
Q psy5694         102 KITGESQASVFQTRLSITGK  121 (129)
Q Consensus       102 ~ltge~k~S~~~~~L~V~ep  121 (129)
                      ..     .+. ...|.|..+
T Consensus        73 ~~-----~s~-~~~l~v~~~   86 (170)
T 3ry4_A           73 TS-----LSD-PVHLTVLFE   86 (170)
T ss_dssp             SB-----CCC-CEEEEEECC
T ss_pred             CC-----ceE-eEEEEEECC
Confidence            53     133 557777754

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=98.98  E-value=4.3e-10  Score=86.05  Aligned_cols=79  Identities=19%  Similarity=0.222  Sum_probs=60.2

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeE-eEEeecceeeecccCCCceEEEccCccEEEe-ccCCCCCCcceEEEeecccCCeE
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIV-TSWIQDDVNIYLNTDTGGKYVVLSSGDLYVF-NATPNDGYKSYRCRTVNKITGES  107 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v-~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~-nv~~~D~g~~Y~C~a~N~ltge~  107 (129)
                      .+..|.++.|.|.+.+.|.   +. ++|.+++..|..    +   ....++.|.|. +++.+|.| .|+|.|.|.+ |+.
T Consensus       243 ~~~~g~~~~l~C~~~g~p~---p~~i~W~~~~~~~~~----~---~~~~~~~L~i~~~v~~~d~G-~Y~C~a~N~~-G~~  310 (331)
T 3u83_A          243 WYLQRMDVKLTCKADANPP---ATEYHWTTLNGSLPK----G---VEAQNRTLFFKGPINYSLAG-TYICEATNPI-GTR  310 (331)
T ss_dssp             CBTTCCCEEEEEEEEEESC---CCEEEEEETTBSCCT----T---EEEETTEEEECSCCCGGGCE-EEEEEEEETT-EEE
T ss_pred             eEeCCCeEEEEEeCcCCCC---CCEEEEEECCCcccc----c---ceecCcEEEEeCCCccccCe-EEEEEEEecc-ccc
Confidence            5788999999999977764   44 899999876632    1   23368899999 99999997 9999999998 663


Q ss_pred             EecccceEEEEecCCC
Q psy5694         108 QASVFQTRLSITGKLK  123 (129)
Q Consensus       108 k~S~~~~~L~V~ep~~  123 (129)
                        +. ...|.|.+...
T Consensus       311 --~~-~~~l~V~~~~~  323 (331)
T 3u83_A          311 --SG-QVEVNITEAAA  323 (331)
T ss_dssp             --EE-EEEECCBC---
T ss_pred             --eE-EEEEEEeccch
Confidence              33 55888876543

>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B*

Probab=98.97  E-value=2e-09  Score=73.63  Aligned_cols=92  Identities=20%  Similarity=0.259  Sum_probs=61.9

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCC-CceeEeEEeecc----eeeec-ccCCCceEEEccC--------ccEEEeccCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMS-EYIIVTSWIQDD----VNIYL-NTDTGGKYVVLSS--------GDLYVFNATPND   90 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~-~~v~v~sW~~d~----~~i~~-~~~~~~ry~vlps--------G~L~I~nv~~~D   90 (129)
                      +... .|.+|++|.|.|.+..... +....+.|.+..    ..+.. .....+|+.+..+        ..|.|+|++.+|
T Consensus        14 p~~v-~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~g~~~~~~~~~~~~R~~~~~~~~~~~~~~~sL~I~~v~~~D   92 (120)
T 3noi_A           14 PPEI-RTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHD   92 (120)
T ss_dssp             CSEE-EEETTSCEEECCEECCCTTSCCCEEEEEEESSCSTTCBCCTTCTTTTTCEECCCHHHHHTTCBCCEEESSCCGGG
T ss_pred             CCEE-EEEcCCCEEEEeeecCCCCCCceeEEEEEeccCCCCceecccccccCCcEEeecccccccCCcEEEEEecCChhh
Confidence            3444 8899999999999875432 123568999864    33321 1224578887533        379999999999


Q ss_pred             CCcceEEEeecccCCeEEecccceEEEEec
Q psy5694          91 GYKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        91 ~g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      +| .|.|.+...-  .........+|.|.+
T Consensus        93 sG-~Y~C~v~~~~--~~~~fg~GT~l~V~~  119 (120)
T 3noi_A           93 AS-IYVCRVEVLG--LGVGTGNGTRLVVEK  119 (120)
T ss_dssp             CE-EEEEEEEETT--TEEEECCCEEEEEEC
T ss_pred             CE-EEEEEEEECC--ccceeCCCeEEEEec
Confidence            97 9999998542  212223266787764

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=98.97  E-value=5.8e-10  Score=91.37  Aligned_cols=86  Identities=8%  Similarity=0.019  Sum_probs=65.3

Q ss_pred             EeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEee-cceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeec
Q psy5694          23 INVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQ-DDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVN  101 (129)
Q Consensus        23 ~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~-d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N  101 (129)
                      ..+.+. .+.+|+++.|.|.+.+.+   .+.++|++ |+..|.    .+.||.+.++|.|.|.+++.+|+|+.|+|.|.|
T Consensus       119 ~~~~~~-~v~~G~~v~l~C~~~~~~---~~~v~W~~~~g~~l~----~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~n  190 (524)
T 2ec8_A          119 LVDRSL-YGKEDNDTLVRCPLTDPE---VTNYSLKGCQGKPLP----KDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQ  190 (524)
T ss_dssp             CCCCCC-CEETTSCEEECCCBSCCC---CSCEEEECSSSCCCC----SSCEEEEETTTEEEEESCCGGGTTCEEEEEEC-
T ss_pred             ccccce-EEEcCCeEEEECcCCCCc---cceEEEEccCCcCcC----CCCceeECCCccEEEeccchhhCCceEEEEEEE
Confidence            445556 889999999999998644   36789988 667663    357999999999999999999996699999999


Q ss_pred             ccCCeEEecccceEEEEe
Q psy5694         102 KITGESQASVFQTRLSIT  119 (129)
Q Consensus       102 ~ltge~k~S~~~~~L~V~  119 (129)
                      .. |. ..|. ...|.|.
T Consensus       191 ~~-~~-~~s~-~~~l~V~  205 (524)
T 2ec8_A          191 EG-KS-VLSE-KFILKVR  205 (524)
T ss_dssp             ----C-CCCC-CEECCEE
T ss_pred             CC-ce-EEEE-EEEEEEE
Confidence            74 44 3343 5677776

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=98.97  E-value=5.2e-09  Score=77.43  Aligned_cols=88  Identities=18%  Similarity=0.137  Sum_probs=58.9

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--------------eeeecccCCCceEEEcc----CccEEEecc
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--------------VNIYLNTDTGGKYVVLS----SGDLYVFNA   86 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--------------~~i~~~~~~~~ry~vlp----sG~L~I~nv   86 (129)
                      ++.. .|.+|++|.|.|.+.+ +   .+.+.|++..              ..... ....+||.+..    ++.|.|.||
T Consensus         9 p~~v-~v~~G~~v~L~C~~~~-~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~sL~I~~v   82 (240)
T 3q5y_A            9 PRHI-IKEKGGRSVLTCIPIS-G---HSNVVWYQQTLGKELKFLIQHYEKVERDK-GFLPSRFSVQQFDDYHSEMNMSAL   82 (240)
T ss_dssp             CSEE-EEETTCCEEEEEECCT-T---CCEEEEEEECTTSCCEEEEEEETTEEEEE-CSCCTTEEEEECTTSCEEEEECSC
T ss_pred             ccee-eecCCCcEEEEEEeCC-C---CceEEEEEECCCCCCEEEEEEcCCccccC-cccCCeEEEEeCCCCEEEEEECcC
Confidence            4445 8999999999999864 2   3578999821              11111 12246888875    336999999


Q ss_pred             CCCCCCcceEEEeecccCCeEEecccceEEEEec
Q psy5694          87 TPNDGYKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        87 ~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      +.+|+| .|+|.+.+...+....+. ...|.|..
T Consensus        83 ~~~D~G-~Y~C~~~~~~~~~~~~~~-~~~l~V~~  114 (240)
T 3q5y_A           83 ELEDSA-MYFCASSLRWGDEQYFGP-GTRLTVLE  114 (240)
T ss_dssp             CGGGCE-EEEEEEESSTTBCCEECC-CEEEEEES
T ss_pred             ChhHCE-EEEEEEccCCCcceEEcC-CEEEEEec
Confidence            999997 999999843222223333 55777764

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=98.97  E-value=1.6e-09  Score=81.18  Aligned_cols=93  Identities=17%  Similarity=0.155  Sum_probs=63.4

Q ss_pred             EeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e---eeec----------ccCCCceEEEccCcc-----EE
Q psy5694          23 INVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NIYL----------NTDTGGKYVVLSSGD-----LY   82 (129)
Q Consensus        23 ~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~---~i~~----------~~~~~~ry~vlpsG~-----L~   82 (129)
                      ..+.+. .|.+|++|.|.|.+.+.+.. .+.+.|++..  .   .+..          .....+||.+..++.     |.
T Consensus         6 ~~p~~~-~v~~G~~v~L~C~~~g~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   83 (253)
T 3uzq_A            6 EQSGAE-LVKPGASVRLSCTASGFNIK-DTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLH   83 (253)
T ss_dssp             EECCCE-EECTTCCEEEEEEECSSCGG-GSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred             ecCCCe-eecCCCcEEEEEEeeCCccc-CceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEE
Confidence            345556 88999999999998765322 3568998821  1   1100          012247888876444     99


Q ss_pred             EeccCCCCCCcceEEEeecccCCeEEecccceEEEEecC
Q psy5694          83 VFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        83 I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      |.+|+.+|+| .|.|.+.|.. +. ..+. ...|.|.++
T Consensus        84 I~~v~~~DsG-~Y~C~~~~~~-~~-~~~~-~~~l~V~~~  118 (253)
T 3uzq_A           84 LSSLTSGDTA-VYYCSRGWEG-FA-YWGQ-GTLVTVSAG  118 (253)
T ss_dssp             ECSCCGGGCE-EEEEEECSSS-CC-EECC-CEEEEECSS
T ss_pred             eCCCCcccCE-EEEEEEeeCC-cc-EECC-CcEEEEecC
Confidence            9999999997 9999999954 22 2233 568888863

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=98.97  E-value=2.4e-09  Score=72.00  Aligned_cols=72  Identities=17%  Similarity=0.390  Sum_probs=53.1

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e---eeecccCCCceEEEc-----cCccEEEeccCCCCCCcc
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NIYLNTDTGGKYVVL-----SSGDLYVFNATPNDGYKS   94 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~---~i~~~~~~~~ry~vl-----psG~L~I~nv~~~D~g~~   94 (129)
                      +... .|.+|++|.|.|.+.+...+ .+.+.|+++.  .   .+.   ..++||.+.     .+..|.|++++.+|+| .
T Consensus         7 p~~~-~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG-~   80 (108)
T 2coq_A            7 PRIA-TKETGESLTINCVLRDTACA-LDSTNWYRTKLGSTKEQTI---SIGGRYSETVDEGSNSASLTIRDLRVEDSG-T   80 (108)
T ss_dssp             CSEE-EECTTCCEEEEEEECCSSEE-EEEEEEEEEETTCCCEEEC---CCBTTEEEEEETTTTEEEEEECSCCGGGCE-E
T ss_pred             CceE-EEcCCCCEEEEeEeCCCcCC-CCEEEEEEcCCCCCcEEEE---EeCCceEEEEcCCCCEEEEEECCCCcccCE-E
Confidence            4555 88999999999998654311 3578999874  2   121   235788763     2456999999999997 9


Q ss_pred             eEEEeecc
Q psy5694          95 YRCRTVNK  102 (129)
Q Consensus        95 Y~C~a~N~  102 (129)
                      |.|.+.|.
T Consensus        81 Y~C~~~~~   88 (108)
T 2coq_A           81 YKCKAYRR   88 (108)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEeC
Confidence            99999983

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=98.97  E-value=2e-09  Score=80.86  Aligned_cols=100  Identities=11%  Similarity=0.094  Sum_probs=65.7

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eeeec----------ccCCCceEEEccCc-----
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYL----------NTDTGGKYVVLSSG-----   79 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i~~----------~~~~~~ry~vlpsG-----   79 (129)
                      .+...+.+. .|.+|++|.|.|.+.+.... .+.+.|++..     ..|..          .....+||.+..++     
T Consensus         8 ~~~~~~~~~-~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   85 (256)
T 3juy_B            8 VQLVQSGAE-VKKPGASVKVSCQASGYRFS-HFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTA   85 (256)
T ss_dssp             CEEEECCCE-EECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEE
T ss_pred             EEEEecCCc-eecCCCeEEEEEEeeccccc-CceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEE
Confidence            344455555 89999999999998763211 3568998742     11110          01234789887433     


Q ss_pred             cEEEeccCCCCCCcceEEEeeccc---------CCeEEecccceEEEEecCCC
Q psy5694          80 DLYVFNATPNDGYKSYRCRTVNKI---------TGESQASVFQTRLSITGKLK  123 (129)
Q Consensus        80 ~L~I~nv~~~D~g~~Y~C~a~N~l---------tge~k~S~~~~~L~V~ep~~  123 (129)
                      .|.|++++.+|+| .|.|.+.|..         .+....+. ..+|.|.++..
T Consensus        86 ~L~I~~v~~~DsG-~Y~C~~~~~~~~~~~~~~~~~~~~~~~-~~~l~V~~~~~  136 (256)
T 3juy_B           86 YMELRSLRSADTA-VYYCARVGEWGWDDSPYDNYYMDVWGK-GTTVIVSSGGG  136 (256)
T ss_dssp             EEEECSCCGGGCE-EEEEEECCCCCTTCCTTTTCSCCEECC-CEEEEECSCC-
T ss_pred             EEEECCCCcccCE-EEEEeEEeccccccccccccceeEECC-ceEEeecCCcc
Confidence            3999999999997 9999999961         12223343 66888887543

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.96  E-value=4e-10  Score=87.30  Aligned_cols=85  Identities=16%  Similarity=0.036  Sum_probs=58.6

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceE-EEccCccEEEeccCCCCCCcceEEEeecccCC--e
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKY-VVLSSGDLYVFNATPNDGYKSYRCRTVNKITG--E  106 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry-~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltg--e  106 (129)
                      .|.+|++++|.|.+...    .+.+.|.||+..+.+.. ...++ ....++.|.|.+|+.+|+| .|+|.+.|...+  -
T Consensus        17 ~V~~G~~VtL~C~~~~~----~~~~~W~k~g~~~~~~~-~~~~~~~~~~~~~L~I~~v~~~DsG-~Y~C~a~~~~~~~~~   90 (257)
T 1b6u_A           17 LVKSEETVILQCWSDVR----FQHFLLHREGKFKDTLH-LIGEHHDGVSKANFSIGPMMQDLAG-TYRCYGSVTHSPYQL   90 (257)
T ss_dssp             EEESSCCEEEEEEESSC----CSEEEEEEESTTCEEEE-EECBCCTTCEEEEEEECSCCTTTCE-EEEEEEECSSCTTSC
T ss_pred             EecCCCCEEEEEecCCC----CcEEEEEECCCCCCcce-eeeeccCCCceEEEEeecCCcccCE-EEEEeEeccCCCccc
Confidence            68899999999998632    24689999985442210 00111 1135688999999999997 999999876432  1


Q ss_pred             EEecccceEEEEecC
Q psy5694         107 SQASVFQTRLSITGK  121 (129)
Q Consensus       107 ~k~S~~~~~L~V~ep  121 (129)
                      ...|. ...|.|+++
T Consensus        91 s~~S~-~~~L~V~~~  104 (257)
T 1b6u_A           91 SAPSD-PLDIVITGL  104 (257)
T ss_dssp             CCCCC-CEEEEEECS
T ss_pred             cccCC-CEEEecccC
Confidence            23355 778888864

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=98.96  E-value=2e-09  Score=80.08  Aligned_cols=94  Identities=19%  Similarity=0.229  Sum_probs=62.5

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCC--ceeEeEEeecc--e---ee-ecc----cCCCceEEEccCc---cEEEeccCC
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSE--YIIVTSWIQDD--V---NI-YLN----TDTGGKYVVLSSG---DLYVFNATP   88 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~--~v~v~sW~~d~--~---~i-~~~----~~~~~ry~vlpsG---~L~I~nv~~   88 (129)
                      .+.+. .|.+|++|+|.|.+.+.+..  -.+.+.|++++  .   .+ ...    ....+||.+..++   .|.|.+++.
T Consensus         7 ~p~~~-~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   85 (247)
T 1svz_A            7 TPLYL-PVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEA   85 (247)
T ss_dssp             ECSEE-EECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             cCCeE-EecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCCH
Confidence            34555 89999999999999766520  02568998853  1   12 110    0125788876543   699999999


Q ss_pred             CCCCcceEEEeecccCCeEEecccceEEEEecCC
Q psy5694          89 NDGYKSYRCRTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      +|+| .|.|.+.|.. +. ..+. .+.|.|..+.
T Consensus        86 ~D~G-~Y~C~~~n~~-~~-~~~~-~~~l~V~~~~  115 (247)
T 1svz_A           86 EDLG-IYYCFQGSHF-PP-TFGG-GTKLEIKGGG  115 (247)
T ss_dssp             GGCE-EEEEEECSSS-SC-EECC-CEEEEEC---
T ss_pred             HHCE-EEEEEEccCC-cc-EECC-CEEEEEECCc
Confidence            9997 9999999974 32 2333 4678887653

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=98.96  E-value=4.4e-10  Score=92.10  Aligned_cols=82  Identities=13%  Similarity=0.106  Sum_probs=64.3

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeE-eEEeecceeeecccCCCceEEEccCc-------cEEEeccCCCCCCcceEEEeec
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIV-TSWIQDDVNIYLNTDTGGKYVVLSSG-------DLYVFNATPNDGYKSYRCRTVN  101 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v-~sW~~d~~~i~~~~~~~~ry~vlpsG-------~L~I~nv~~~D~g~~Y~C~a~N  101 (129)
                      .+.+|.++.|.|.+.+.|+   +. ++|++++..|...   ..+|....++       .|.|.+++.+|+| .|+|.|.|
T Consensus       324 ~v~~G~~v~l~C~~~g~P~---p~~v~W~k~g~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a~N  396 (524)
T 2ec8_A          324 FVNDGENVDLIVEYEAFPK---PEHQQWIYMNRTFTDK---WEDYPKSENESNIRYVSELHLTRLKGTEGG-TYTFLVSN  396 (524)
T ss_dssp             EECTTCCEEEEEEEEEESC---CCEEEEESSSCBCSSS---BCCEESCCSSSCCEEEEEEEECSCCGGGCE-EEEEEEEC
T ss_pred             EEcCCCcEEEEEEEeecCC---CcEEEEEECCeeccCC---ccceeEEccCCCceeEEEEEEeecCcccCe-EEEEEEEe
Confidence            8899999999999977764   45 8999999777432   2377766544       8999999999997 99999999


Q ss_pred             ccCCeEEecccceEEEEecCC
Q psy5694         102 KITGESQASVFQTRLSITGKL  122 (129)
Q Consensus       102 ~ltge~k~S~~~~~L~V~ep~  122 (129)
                      .. |..  +. ...|.|..++
T Consensus       397 ~~-g~~--~~-~~~l~V~~~P  413 (524)
T 2ec8_A          397 SD-VNA--AI-AFNVYVNTKP  413 (524)
T ss_dssp             SS-CEE--EE-EEEEEECEEE
T ss_pred             cC-ceE--EE-EEEEEEecCC
Confidence            98 653  33 4578887543

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=98.96  E-value=3.8e-10  Score=95.34  Aligned_cols=80  Identities=13%  Similarity=0.071  Sum_probs=61.8

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEe
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQA  109 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~  109 (129)
                      .+.+|.++.|.|.+.+.|+   +.++|++|+..|...    .++. ..++.|.|.+++.+|+| .|+|.|.|.. |+...
T Consensus       337 ~v~~G~~v~L~C~~~g~P~---p~i~W~k~g~~l~~~----~~~~-~~~~~L~I~~v~~~D~G-~YtC~A~N~~-g~~~~  406 (527)
T 3qs9_E          337 EIDQYEEFCFSVRFKAYPQ---IRCTWTFSRKSFPCE----QKGL-DNGYSISKFCNHKHQPG-EYIFHAENDD-AQFTK  406 (527)
T ss_dssp             CCCTTCCCCEEEEEEEESC---CEEEEEETTEEEECB----CCBC-SSSSEEEEECCCTTCCS-CEEEEEEETT-EEEEE
T ss_pred             EEcCCCeEEEEEEEEecCC---CEEEEEECCEECcCC----cccc-cCCcEEEEecCCcccCE-EEEEEEEeCC-CcEEE
Confidence            6788999999999988775   569999999888532    3332 36788999999999998 9999999998 55332


Q ss_pred             cccceEEEEecCC
Q psy5694         110 SVFQTRLSITGKL  122 (129)
Q Consensus       110 S~~~~~L~V~ep~  122 (129)
                         .+.|.|..|+
T Consensus       407 ---~~~L~V~~~P  416 (527)
T 3qs9_E          407 ---MFTLNIRRKP  416 (527)
T ss_dssp             ---EEEEC--CCC
T ss_pred             ---EEEEEEecCC
Confidence               4588887654

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=98.96  E-value=2.2e-09  Score=74.00  Aligned_cols=91  Identities=16%  Similarity=0.194  Sum_probs=61.4

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----ee-eecc----cCCCceEEEcc---CccEEEeccCCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VN-IYLN----TDTGGKYVVLS---SGDLYVFNATPNDG   91 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~-i~~~----~~~~~ry~vlp---sG~L~I~nv~~~D~   91 (129)
                      +... .|.+|.+|.|.|.+.+.+.   +.+.|++..     .. +...    ....+||.+..   ++.|.|.|++.+|+
T Consensus         8 p~~~-~v~~G~~v~L~C~~~~~~~---~~v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~Ds   83 (120)
T 1mqk_L            8 PVSL-SASVGETVTITCRASENIY---SYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDF   83 (120)
T ss_dssp             CSEE-EECTTCCEEEEEEESSCCT---TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCeE-EEcCCCcEEEEEEeCCCCC---ceEEEEEECCCCCCEEEEEeCCcCCCCCCceEEEeccCCEEEEEECCCCHHHC
Confidence            4455 8999999999999976552   458999853     11 2211    01257888753   35699999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEecCC
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      | .|.|.+.|.. ....... ..+|.|.++.
T Consensus        84 G-~Y~C~~~~~~-~~~~fg~-gt~L~V~~~~  111 (120)
T 1mqk_L           84 G-SYYCQHHYGT-PPLTFGG-GTKLEIKREQ  111 (120)
T ss_dssp             E-EEEEEECSSS-SSCCBCC-CEEEEEC---
T ss_pred             E-EEEEEEEeCC-CceEECC-CeEEEEecCC
Confidence            7 9999999852 0222233 6699997654

>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*

Probab=98.96  E-value=4.8e-09  Score=72.40  Aligned_cols=100  Identities=16%  Similarity=0.187  Sum_probs=64.0

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCC----CCceeEeEEeecce------eeeccc-------CCCceEEEccC----
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYM----SEYIIVTSWIQDDV------NIYLNT-------DTGGKYVVLSS----   78 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~----~~~v~v~sW~~d~~------~i~~~~-------~~~~ry~vlps----   78 (129)
                      .|.++....+.|.+|.+|.|.|.+....    ......+.|.+...      .|....       ...+|+.+..+    
T Consensus         7 ~~~~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~R~~~~~~~~~~   86 (132)
T 1nko_A            7 DYSLTMQSSVTVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTK   86 (132)
T ss_dssp             GCEEEECSEEEEETTCCEEECEEEECCCCTTTTTSCCEEEEEEC-----CCSCSEESCTTCCCCGGGTTTEEECSCGGGT
T ss_pred             CeEEeCCCEEEEcCCCeEEEEccccCCCccccCCCccEEEEEECCCCCCcccEEEeCCCccccccccCccEEEeCCCCCC
Confidence            3444433334899999999999985210    01135689999752      233211       12479988642    


Q ss_pred             -ccEEEeccCCCCCCcceEEEeecccCCeEEec-ccceEEEEecCC
Q psy5694          79 -GDLYVFNATPNDGYKSYRCRTVNKITGESQAS-VFQTRLSITGKL  122 (129)
Q Consensus        79 -G~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S-~~~~~L~V~ep~  122 (129)
                       ..|.|+||+.+|+| .|.|.+.+.-  ..... .....|.|+++.
T Consensus        87 ~~sL~I~~v~~~DsG-~Y~C~v~~~~--~~~~~~~~~~~l~V~~~~  129 (132)
T 1nko_A           87 NCTLSIRDARMSDAG-RYFFRMEKGN--IKWNYKYDQLSVNVTALT  129 (132)
T ss_dssp             BCCEEECSCCGGGCE-EEEEEEEETT--EEEECTTSCEEEEEECCC
T ss_pred             ceEEEEcccCcccCe-eEEEEEEcCC--CcccccCCceEEEecccC
Confidence             36999999999997 9999998752  21111 235688888754

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.96  E-value=7.2e-10  Score=84.73  Aligned_cols=82  Identities=12%  Similarity=-0.006  Sum_probs=58.5

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEe
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQA  109 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~  109 (129)
                      .|.+|++++|.|.++..+    ..+.|.||+..+...  .........++.|.|.+|+.+|+| .|+|.+.|.. +....
T Consensus        17 ~v~~G~~VtL~C~~~~~~----~~~~w~k~g~~~~~~--~~~~~~~~~~~~L~I~~v~~~DsG-~Y~C~~~~~~-~~s~~   88 (242)
T 1p6f_A           17 MVPKEKQVTICCQGNYGA----VEYQLHFEGSLFAVD--RPKPPERINKVKFYIPDMNSRMAG-QYSCIYRVGE-LWSEP   88 (242)
T ss_dssp             EEETTCCEEEEEECCTTC----CEEEEEETTEEEEEE--CCSSCTTCCEEEEEECSCCGGGCE-EEEEEEEETT-EECCC
T ss_pred             ccCCCCcEEEEEeeCCCC----cEEEEEECCCccccc--cccccCCcceeEEEecCCCcccCe-EEEEEEecCC-ccccC
Confidence            578999999999986432    457999998655321  011111235688999999999997 9999998864 33234


Q ss_pred             cccceEEEEec
Q psy5694         110 SVFQTRLSITG  120 (129)
Q Consensus       110 S~~~~~L~V~e  120 (129)
                      |. ...|.|++
T Consensus        89 S~-~~~L~V~~   98 (242)
T 1p6f_A           89 SN-LLDLVVTE   98 (242)
T ss_dssp             CC-CEEEEEEC
T ss_pred             Cc-ceEEEeec
Confidence            55 77888875

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=98.95  E-value=2.1e-09  Score=79.99  Aligned_cols=91  Identities=16%  Similarity=0.214  Sum_probs=62.1

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--ee---e---ecc-------cCCCceEEEcc-----CccEEE
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VN---I---YLN-------TDTGGKYVVLS-----SGDLYV   83 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~~---i---~~~-------~~~~~ry~vlp-----sG~L~I   83 (129)
                      +++.. .|.+|.+|.|.|.+.+.+.+ ...+.|++++  ..   |   ...       ....+||.+..     ++.|.|
T Consensus         6 qp~~~-~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   83 (227)
T 1mju_H            6 QPGAE-LVKPGASVKLSCKASGYTFT-NYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQL   83 (227)
T ss_dssp             CCSEE-EECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             CCCCe-EEcCCCCEEEEEEecCCccc-cceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEE
Confidence            34555 88999999999999765422 2568998863  11   1   100       01247888863     458999


Q ss_pred             eccCCCCCCcceEEEeecccCCeEEecccceEEEEec
Q psy5694          84 FNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        84 ~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      +||+.+|+| .|.|.+.|..  ....+. ..+|.|..
T Consensus        84 ~~v~~~D~G-~Y~C~~~~~~--~~~~~~-~~~L~V~~  116 (227)
T 1mju_H           84 SSLTSDDSA-VYYCANKLGW--FPYWGQ-GTLVTVSA  116 (227)
T ss_dssp             CSCCGGGCE-EEEEEEEETT--EEEECC-CEEEEECS
T ss_pred             CCCCcccCE-EEEEEECCCC--ceEEcC-cEEEEEcC
Confidence            999999997 9999999862  222233 45788775

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=98.95  E-value=7.4e-10  Score=84.58  Aligned_cols=94  Identities=16%  Similarity=0.301  Sum_probs=64.3

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eeeecc-----cCCCceEEEccCc---cEEEecc
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYLN-----TDTGGKYVVLSSG---DLYVFNA   86 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i~~~-----~~~~~ry~vlpsG---~L~I~nv   86 (129)
                      .+...+.+. .|.+|++|.|.|.+.+.+.   +.+.|++++     ..|...     ....+||.+..+|   .|.|.++
T Consensus        14 ~v~~~p~~~-~v~~G~~v~L~C~~~~~p~---~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   89 (276)
T 3auv_A           14 QMTQSPSSL-SASVGDRVTITCRASQDVS---TAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSL   89 (276)
T ss_dssp             CEEEECSEE-ECCTTCCEEEEEEESSCCT---TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             eEEeCCCeE-EEcCCCCEEEEeEcCCCCC---CcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccC
Confidence            355556666 8999999999999987653   468998864     122110     1235789887655   7999999


Q ss_pred             CCCCCCcceEEEeecccCCeEEecccceEEEEecC
Q psy5694          87 TPNDGYKSYRCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        87 ~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      +.+|+| .|+|.+.|.. +. ..+. ...|.|..+
T Consensus        90 ~~~DsG-~Y~C~~~n~~-~~-~~~~-~~~l~V~~~  120 (276)
T 3auv_A           90 QPEDFA-TYYCQQHYTT-PP-TFGC-GTKVEIKGG  120 (276)
T ss_dssp             CGGGCE-EEEEEECSSS-SC-CCCC-CEEEEC---
T ss_pred             ChhhCE-EEEEEEecCC-cc-cccC-CEEEEEecC
Confidence            999997 9999999974 32 1232 456777654

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=98.95  E-value=2e-09  Score=81.61  Aligned_cols=93  Identities=17%  Similarity=0.264  Sum_probs=62.9

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--ee---e-ec---------ccCCCceEEEccC-----ccEEE
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VN---I-YL---------NTDTGGKYVVLSS-----GDLYV   83 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~~---i-~~---------~~~~~~ry~vlps-----G~L~I   83 (129)
                      ++... .|.+|.+|.|.|.+.+.+.. .+.+.|++++  ..   | ..         .....+||.+..+     +.|.|
T Consensus         6 ~p~~~-~v~~G~~v~L~C~~~g~~~~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (256)
T 1nqb_A            6 QSGAE-LVKPGASVKLSCKASGYTFT-SYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQL   83 (256)
T ss_dssp             ECCCE-EECTTCCEEEEEEECSSCGG-GSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             CCCCe-eecCCCcEEEEEEeccccCC-CceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEE
Confidence            45555 89999999999999776421 2568999853  11   1 10         0112478888643     47999


Q ss_pred             eccCCCCCCcceEEEeecccCCe---EEecccceEEEEecC
Q psy5694          84 FNATPNDGYKSYRCRTVNKITGE---SQASVFQTRLSITGK  121 (129)
Q Consensus        84 ~nv~~~D~g~~Y~C~a~N~ltge---~k~S~~~~~L~V~ep  121 (129)
                      .+++.+|+| .|.|.+.|.. |+   ...+. ...|.|..+
T Consensus        84 ~~v~~~DsG-~Y~C~~~n~~-g~~~~~~~~~-~~~L~V~~~  121 (256)
T 1nqb_A           84 SSLTSEDSA-VYYCARYDYY-GSSYFDYWGQ-GTTVTVSSD  121 (256)
T ss_dssp             CSCCGGGCE-EEEEEECCTT-SSSSCSEECC-CEEEEECCC
T ss_pred             CcCChhhCE-EEEEEEeecc-CccceeEEcC-ceeeeeccc
Confidence            999999997 9999999985 32   12222 456777644

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=98.95  E-value=5.1e-10  Score=81.19  Aligned_cols=58  Identities=14%  Similarity=0.254  Sum_probs=48.1

Q ss_pred             EEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        31 V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      +..|+++.|.|.+|      .+.++|++|+..|...    .+    .++.|.|.+++.+|+| .|+|+|.|..
T Consensus       119 ~~~G~~v~l~C~~p------~p~i~W~k~g~~i~~~----~~----~~~~L~i~~v~~~D~G-~Y~C~a~N~~  176 (186)
T 1jbj_A          119 SRGDGSVLLTCGLT------DKTIKWLKDGSIISPL----NA----TKNTWNLGNNAKDPRG-TYQCQGAKET  176 (186)
T ss_dssp             CSSSCEEEEECSSS------CSCEEEEETTEECCCS----SC----CSSCCEEEETTSCCEE-EEEEEESSCE
T ss_pred             cCCCCeEEEEeeCC------CCeEEEEECCEECccc----CC----CcceEEECCCCcCcCE-EEEEEEEcCc
Confidence            34899999999993      2468999999887432    11    5789999999999997 9999999997

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=98.95  E-value=2.2e-09  Score=80.48  Aligned_cols=94  Identities=15%  Similarity=0.152  Sum_probs=62.2

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee---ec------ccCCCceEEEccCc-----cEEEe
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI---YL------NTDTGGKYVVLSSG-----DLYVF   84 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i---~~------~~~~~~ry~vlpsG-----~L~I~   84 (129)
                      .+... .|.+|++|+|.|.+.+.+.. .+.+.|++..     ..+   ..      .....+||.+..++     .|.|.
T Consensus        14 ~p~~~-~v~~G~~v~L~C~~~~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   91 (257)
T 3gkz_A           14 ESGPS-LVKPSQTLSLTCSVTGDSVT-SGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLK   91 (257)
T ss_dssp             EECCS-EECTTCCEEEEEEEEESCCS-SCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             CCCCe-EEcCCCcEEEEEEEEccccc-ceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEEC
Confidence            34445 78999999999998764321 3578998832     112   00      01234788887543     59999


Q ss_pred             ccCCCCCCcceEEEeecccC-CeEEecccceEEEEecC
Q psy5694          85 NATPNDGYKSYRCRTVNKIT-GESQASVFQTRLSITGK  121 (129)
Q Consensus        85 nv~~~D~g~~Y~C~a~N~lt-ge~k~S~~~~~L~V~ep  121 (129)
                      +++.+|+| .|.|.+.|... +....+. ...|.|.++
T Consensus        92 ~v~~~DsG-~Y~C~~~n~~~~~~~~~~~-~~~l~V~~~  127 (257)
T 3gkz_A           92 SVSSEDTA-TYYCSYFDSDDYAMEYWGQ-GTSVTVSGG  127 (257)
T ss_dssp             SCCGGGCE-EEEEEEECTTCTTCEEECC-CEEEEEC--
T ss_pred             CCChhhCE-EEEEEEecCCCcceeEEcC-CEEEeecCc
Confidence            99999997 99999999621 2223343 668888876

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=98.95  E-value=2.5e-09  Score=83.76  Aligned_cols=86  Identities=10%  Similarity=-0.022  Sum_probs=62.0

Q ss_pred             EEEeCCeEEEEeeCCCCCCC--ceeEeEEeecceeeecc----cCCCceEEEc-----------c--CccEEEeccCCCC
Q psy5694          30 NVILGNTAVLRCQIPSYMSE--YIIVTSWIQDDVNIYLN----TDTGGKYVVL-----------S--SGDLYVFNATPND   90 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~--~v~v~sW~~d~~~i~~~----~~~~~ry~vl-----------p--sG~L~I~nv~~~D   90 (129)
                      .+.+|.++.|.|.+.+.+..  ..+.++|.+|+..+...    ...++++.+.           .  ++.|.|.+++.+|
T Consensus       187 ~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d  266 (363)
T 1wio_A          187 YKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQY  266 (363)
T ss_dssp             EEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGG
T ss_pred             EEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCc
Confidence            78899999999988763221  25789999998666321    0015667663           3  3489999999999


Q ss_pred             CCcceEEEeecc--cCCeEEecccceEEEEec
Q psy5694          91 GYKSYRCRTVNK--ITGESQASVFQTRLSITG  120 (129)
Q Consensus        91 ~g~~Y~C~a~N~--ltge~k~S~~~~~L~V~e  120 (129)
                      +| .|+|.|.|.  . |..  +. ...|.|..
T Consensus       267 ~G-~Y~C~a~n~~~~-g~~--~~-~~~l~V~~  293 (363)
T 1wio_A          267 AG-SGNLTLALEAKT-GKL--HQ-EVNLVVMR  293 (363)
T ss_dssp             CE-EEEEEECBTTTT-CCE--EE-EEEEEEEE
T ss_pred             Cc-EEEEEEEEhhhc-CeE--EE-EEeEEEEE
Confidence            97 999999999  6 553  33 45677653

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=98.95  E-value=2.5e-09  Score=71.65  Aligned_cols=86  Identities=15%  Similarity=0.190  Sum_probs=59.3

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc----cCCCceEEEccC---ccEEEeccCCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN----TDTGGKYVVLSS---GDLYVFNATPNDG   91 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~----~~~~~ry~vlps---G~L~I~nv~~~D~   91 (129)
                      +.+. .|.+|.+|.|.|.+.+.+.   +.+.|.+..     ..| ...    ....+||.+..+   ..|.|.|++.+|+
T Consensus         8 p~~~-~~~~G~~v~L~C~~~~~~~---~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds   83 (107)
T 1i8k_A            8 PASL-SVATGEKVTIRCMTSTDID---DDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDV   83 (107)
T ss_dssp             CSEE-ECCTTCCEEEEEEESSCCT---TCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCeE-EecCCCCEEEEEEECCCCC---CcEEEEEECCCCCCEEEEEecCccCCCCCCCEEEEccCCEEEEEECCCCHHHC
Confidence            4455 8899999999999876542   458998853     112 211    012578887643   3699999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEE
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSI  118 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V  118 (129)
                      | .|.|.+.|..  ...-.+ ..+|.|
T Consensus        84 G-~Y~C~~~~~~--~~~fg~-gt~l~V  106 (107)
T 1i8k_A           84 G-DYYCLQSFNV--PLTFGC-GTKLEI  106 (107)
T ss_dssp             E-EEEEEECSSS--SCEECC-CEEEEC
T ss_pred             E-EEEEEEeeCC--CcEECC-CeEEEe
Confidence            7 9999999863  323333 556665

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=98.95  E-value=1.4e-09  Score=79.07  Aligned_cols=78  Identities=21%  Similarity=0.118  Sum_probs=53.7

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc----CccEEEeccCCCCCCcceEEEeecccCC
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS----SGDLYVFNATPNDGYKSYRCRTVNKITG  105 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp----sG~L~I~nv~~~D~g~~Y~C~a~N~ltg  105 (129)
                      .|.+|+++.|.|.+.+.+    +.+.|.||+..+.+.    .++....    ++.|.|.+|+  |+| .|+|.|.|....
T Consensus       118 ~v~~G~~v~L~C~~~~~~----~~~~w~k~g~~~~~~----~~~~~~~~~~~~~~L~i~~v~--d~G-~Y~C~a~~~~~~  186 (201)
T 1nkr_A          118 TVLAGENVTLSCSSRSSY----DMYHLSREGEAHERR----LPAGPKVNGTFQADFPLGPAT--HGG-TYRCFGSFHDSP  186 (201)
T ss_dssp             EECTTCEEEEEEEESSCC----SEEEEEETTCSSCEE----EECEEEETTEEEEEEEEEECC--SCE-EEEEEEEETTEE
T ss_pred             ccCCCCeEEEEEeCCCCC----ceEEEEECCcccCcc----cccccccCCceEEEEEeCCcC--CCe-eEEEEEEcCCCC
Confidence            688999999999987532    457999998665321    2222222    6789999999  997 999999975311


Q ss_pred             --eEEecccceEEEEe
Q psy5694         106 --ESQASVFQTRLSIT  119 (129)
Q Consensus       106 --e~k~S~~~~~L~V~  119 (129)
                        -...|+ +..|.|+
T Consensus       187 ~~~s~~S~-~~~l~V~  201 (201)
T 1nkr_A          187 YEWSKSSD-PLLVSVT  201 (201)
T ss_dssp             EEECCCCC-CEEEEEC
T ss_pred             CcCCCCCC-CEEEEeC
Confidence              112244 6677764

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=98.95  E-value=2.1e-09  Score=82.01  Aligned_cols=95  Identities=12%  Similarity=0.152  Sum_probs=63.6

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e---eee---c-------ccCCCceEEEccCc-----cEEE
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NIY---L-------NTDTGGKYVVLSSG-----DLYV   83 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~---~i~---~-------~~~~~~ry~vlpsG-----~L~I   83 (129)
                      .+.+. .+.+|+++.|.|.+.+.++. .+.+.|++++  .   .|.   .       .....+||.+..++     .|.|
T Consensus       140 ~p~~~-~v~~G~~v~L~C~~~g~~~~-~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I  217 (276)
T 3auv_A          140 ESGGG-LVQPGGSLRLSCAASGFTIS-DYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQM  217 (276)
T ss_dssp             EECCE-EECTTCCEEEEEEEESSCGG-GSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEE
T ss_pred             CCCce-EecCCCeEEEEEEecCccCC-CCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEE
Confidence            34555 88999999999999766532 3579999963  1   111   1       01235789886543     7999


Q ss_pred             eccCCCCCCcceEEEeecccC--CeEEecccceEEEEecCC
Q psy5694          84 FNATPNDGYKSYRCRTVNKIT--GESQASVFQTRLSITGKL  122 (129)
Q Consensus        84 ~nv~~~D~g~~Y~C~a~N~lt--ge~k~S~~~~~L~V~ep~  122 (129)
                      .+++.+|+| .|.|.|.|..+  +...... ..+|+|.+.+
T Consensus       218 ~~v~~~DsG-~Y~C~a~n~~~~~~~~~fg~-gt~l~V~~~~  256 (276)
T 3auv_A          218 NSLRAEDTA-VYYCARFVFFLPYAMDYWGQ-GTLVTVSSAS  256 (276)
T ss_dssp             CSCCGGGCE-EEEEEEECSSTTCSCCCBCC-CEEEEEC---
T ss_pred             CCCChhHCE-EEEEEEEcCcCCcCceEECC-CEEEEEcccc
Confidence            999999997 99999999731  2222233 5688887543

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=98.95  E-value=1.7e-09  Score=81.04  Aligned_cols=99  Identities=18%  Similarity=0.250  Sum_probs=65.0

Q ss_pred             eEeeeeeeEEEeCCeEEEEeeCCCCCCC-ceeEeEEeecc--ee---e-ecc----cCCCceEEEccCc---cEEEeccC
Q psy5694          22 EINVNYEHNVILGNTAVLRCQIPSYMSE-YIIVTSWIQDD--VN---I-YLN----TDTGGKYVVLSSG---DLYVFNAT   87 (129)
Q Consensus        22 ~~~v~~~~~V~~GntAvL~C~vp~~~~~-~v~v~sW~~d~--~~---i-~~~----~~~~~ry~vlpsG---~L~I~nv~   87 (129)
                      ...+... .|.+|++|.|.|.+.+.+.. .-..+.|++++  ..   + ...    ....+||.+..++   .|.|.+++
T Consensus       137 ~~~p~~~-~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~  215 (253)
T 3uzq_A          137 TQTPASL-AVSLGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVE  215 (253)
T ss_dssp             EEECSEE-EECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             ECcCCeE-EEeCCCCEEEEEEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCC
Confidence            3344455 89999999999999876531 01278999842  11   1 110    0124678775443   49999999


Q ss_pred             CCCCCcceEEEeecccCCeEEecccceEEEEecCCCCC
Q psy5694          88 PNDGYKSYRCRTVNKITGESQASVFQTRLSITGKLKSL  125 (129)
Q Consensus        88 ~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~~~~  125 (129)
                      .+|+| .|.|.|.|..  .....+ ..+|.|.+.....
T Consensus       216 ~~DsG-~Y~C~~~n~~--~~~fg~-gt~l~v~~~~~~~  249 (253)
T 3uzq_A          216 ADDVA-TYFCQRSNEV--PWTFGG-GTKLEIKRPLEHH  249 (253)
T ss_dssp             GGGCE-EEEEEECSSS--SCCBCC-CEEEEECCC----
T ss_pred             HHHCE-EEEEEEccCC--CcEECC-CEEEEEcCCCCCc
Confidence            99997 9999999963  333444 7799999765543

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=98.94  E-value=9.5e-10  Score=82.80  Aligned_cols=76  Identities=16%  Similarity=0.150  Sum_probs=53.5

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccC----ccEEEeccCCCCCCcceEEEeecccCC
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS----GDLYVFNATPNDGYKSYRCRTVNKITG  105 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlps----G~L~I~nv~~~D~g~~Y~C~a~N~ltg  105 (129)
                      .|.+|+++.|.|.+.+.       ++|.+++..+      ..++....+    +.|.|.+++.+|+| .|+|.|.|.. |
T Consensus        11 ~v~~G~~v~L~C~~~~~-------v~W~~~~~~~------~~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~C~a~n~~-g   75 (289)
T 3mjg_X           11 VLNVSSTFVLTCSGSAP-------VVWERMSQEP------PQEMAKAQDGTFSSVLTLTNLTGLDTG-EYFCTHNDSR-G   75 (289)
T ss_dssp             ECCTTCCEEEEEEESSC-------CEEEBTTBCC------SEEEEECTTSCEEEEEEECSCCGGGCE-EEEEECCC----
T ss_pred             EEeCCCcEEEEEeccce-------EEEECCCCCc------ccceeccCCCceeEEEEEccCChhhCE-EEEEEEcccC-C
Confidence            68899999999998642       8999998665      245555443    57999999999997 9999999987 4


Q ss_pred             e-EEecccceEEEEecC
Q psy5694         106 E-SQASVFQTRLSITGK  121 (129)
Q Consensus       106 e-~k~S~~~~~L~V~ep  121 (129)
                      + ...+. ...|.|.+|
T Consensus        76 ~~~~~~~-~~~v~v~~p   91 (289)
T 3mjg_X           76 LETDERK-RLYIFVPDP   91 (289)
T ss_dssp             ---CCCE-EEEEECCCT
T ss_pred             CCcCcEE-eEEEEEECC
Confidence            4 22232 445555544

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=98.94  E-value=3.8e-09  Score=78.25  Aligned_cols=93  Identities=13%  Similarity=0.198  Sum_probs=62.1

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc---------cCCCceEEEccC-----ccEEE
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN---------TDTGGKYVVLSS-----GDLYV   83 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~---------~~~~~ry~vlps-----G~L~I   83 (129)
                      ++... .|.+|.+|.|.|.+.+.+.. ...+.|++++     ..| ...         ....+||.+..+     +.|.|
T Consensus         6 qp~~~-~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   83 (223)
T 1dee_B            6 ESGGG-VVQPGKSLRLSCAASGFTFS-GYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQM   83 (223)
T ss_dssp             EECCC-EECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEE
T ss_pred             cCCCE-EEcCCCcEEEEEEecCcccC-CceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEE
Confidence            34455 89999999999998765422 2568998853     112 110         113578988642     47999


Q ss_pred             eccCCCCCCcceEEEeecccC---CeEEecccceEEEEec
Q psy5694          84 FNATPNDGYKSYRCRTVNKIT---GESQASVFQTRLSITG  120 (129)
Q Consensus        84 ~nv~~~D~g~~Y~C~a~N~lt---ge~k~S~~~~~L~V~e  120 (129)
                      +||+.+|+| .|.|.+.|..+   .....+. ...|.|..
T Consensus        84 ~~v~~~D~G-~Y~C~~~~~~~~~~~~~~~~~-~~~L~V~~  121 (223)
T 1dee_B           84 NSLRAEDTA-VYYCAKVKFYDPTAPNDYWGQ-GTLVTVSS  121 (223)
T ss_dssp             CSCCGGGCE-EEEEEEESSSSTTCCEEEECC-CEEEEECS
T ss_pred             CCCCHHHCE-EEEEEEeccccCcccceeecC-cEEEEEcc
Confidence            999999997 99999998642   1112222 45788874

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=98.94  E-value=3.8e-09  Score=78.13  Aligned_cols=94  Identities=14%  Similarity=0.179  Sum_probs=62.8

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc---------cCCCceEEEccC-----ccEEE
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN---------TDTGGKYVVLSS-----GDLYV   83 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~---------~~~~~ry~vlps-----G~L~I   83 (129)
                      ++... .|.+|.+|.|.|.+.+.+.. .+.+.|+++.     ..| ...         ....+||.+..+     +.|.|
T Consensus         6 q~~~~-~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (220)
T 2fbj_H            6 ESGGG-LVQPGGSLKLSCAASGFDFS-KYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQM   83 (220)
T ss_dssp             EECCE-EECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEE
T ss_pred             cCCCe-EecCCCcEEEEEEecCccCC-CceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEE
Confidence            34455 89999999999998654422 2468998853     112 110         113479988743     47999


Q ss_pred             eccCCCCCCcceEEEeecccCCeEEecccceEEEEecC
Q psy5694          84 FNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        84 ~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      ++++.+|+| .|.|.+.|....+...+. ..+|.|.++
T Consensus        84 ~~v~~~DsG-~Y~C~~~~~~~~~~~~~~-~~~L~V~~~  119 (220)
T 2fbj_H           84 SKVRSEDTA-LYYCARLHYYGYNAYWGQ-GTLVTVSAE  119 (220)
T ss_dssp             CSCCGGGCE-EEEEEEEETTTEEEEECC-CEEEEECSS
T ss_pred             CCCChhhCE-EEEEEEeccccccceecC-CEEEEecCC
Confidence            999999997 999999987421102233 458888754

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.94  E-value=3.8e-09  Score=73.41  Aligned_cols=92  Identities=25%  Similarity=0.352  Sum_probs=61.9

Q ss_pred             eeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-e---eeeccc-CCCceEEEcc--------CccEEEeccCCCCCC
Q psy5694          26 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-V---NIYLNT-DTGGKYVVLS--------SGDLYVFNATPNDGY   92 (129)
Q Consensus        26 ~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-~---~i~~~~-~~~~ry~vlp--------sG~L~I~nv~~~D~g   92 (129)
                      ... .|.+|.+|.|.|.+....+  ...+.|++++ .   .|.... ...+|+....        +..|.|+|++.+|+|
T Consensus        16 ~~~-~v~~G~~v~L~C~~~~~~~--~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG   92 (136)
T 2d9c_A           16 KSV-SVAAGESATLRCAMTSLIP--VGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPADAG   92 (136)
T ss_dssp             SEE-EEETTSCEEECCEESCCCS--CCCCEEEETTTSSCEEEEESSSCCCSSBCCSSCSSSSSCCBCCEEESSCCTTTCE
T ss_pred             cEE-EEcCCCCEEEEEEEcCCCC--CceEEEEeecCCCeEEEEEcCCCcccceeeeeeeccCCCCEEEEEECCCCHHHCE
Confidence            344 8999999999999865422  2468999975 1   233211 1114554421        567999999999997


Q ss_pred             cceEEEeecccC---CeEEecccceEEEEecCC
Q psy5694          93 KSYRCRTVNKIT---GESQASVFQTRLSITGKL  122 (129)
Q Consensus        93 ~~Y~C~a~N~lt---ge~k~S~~~~~L~V~ep~  122 (129)
                       .|.|.+.|...   .+...+. ..+|.|.++.
T Consensus        93 -~Y~C~~~~~~~~~~~~~~~g~-~t~L~V~~~~  123 (136)
T 2d9c_A           93 -TYYCVKFRKGSPDDVEFKSGA-GTELSVRAKP  123 (136)
T ss_dssp             -EEEEEEEECCSSSCEEEEECC-CEEEEEECCC
T ss_pred             -EEEEEEEeCCCCcccceeeCC-CeEEEEEeCC
Confidence             99999998532   1222333 6799998765

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=98.94  E-value=4.1e-09  Score=71.27  Aligned_cols=72  Identities=17%  Similarity=0.320  Sum_probs=52.6

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e---eeecccCCCceEEEc-----cCccEEEeccCCCCCCcc
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NIYLNTDTGGKYVVL-----SSGDLYVFNATPNDGYKS   94 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~---~i~~~~~~~~ry~vl-----psG~L~I~nv~~~D~g~~   94 (129)
                      +... .|.+|.+|.|.|.+.+...+ .+.+.|+++.  .   .+.   ..++||.+.     .+..|.|+|++.+|+| .
T Consensus         7 p~~~-~~~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG-~   80 (111)
T 2ywz_A            7 PRTI-TKETGESLTIKCVLKDHSCG-LSSTTWYRTQLGSTNEKTI---SIGGRYDETVDKGSKSFSLRISDLRVEDSG-T   80 (111)
T ss_dssp             CSEE-EECTTCCEEEEEEEESCSSC-CCEEEEEEEETTCCCCEEC---CSBTTEEEEEETTTTEEEEEECSCCGGGCE-E
T ss_pred             CCcE-EEccCCCEEEEeEECCCCCC-CCEEEEEEeCCCCCceEee---EeCCCEEEEEeCCCCEEEEEECCCChhcCE-E
Confidence            4555 88999999999998654211 2568999863  1   121   235788753     2456999999999997 9


Q ss_pred             eEEEeecc
Q psy5694          95 YRCRTVNK  102 (129)
Q Consensus        95 Y~C~a~N~  102 (129)
                      |.|.+.|.
T Consensus        81 Y~C~~~~~   88 (111)
T 2ywz_A           81 YKCQADYS   88 (111)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEcC
Confidence            99999983

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=98.94  E-value=6.4e-10  Score=80.73  Aligned_cols=86  Identities=15%  Similarity=0.213  Sum_probs=60.1

Q ss_pred             EEEeCCeEEEEeeCCCCCC--CceeEeEEeeccee--ee--c-----ccCCCceEEEcc------CccEEEeccCCCCCC
Q psy5694          30 NVILGNTAVLRCQIPSYMS--EYIIVTSWIQDDVN--IY--L-----NTDTGGKYVVLS------SGDLYVFNATPNDGY   92 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~--~~v~v~sW~~d~~~--i~--~-----~~~~~~ry~vlp------sG~L~I~nv~~~D~g   92 (129)
                      .|.+|+++.|.|.+.+.+.  .....+.|.+++..  +.  .     .....+|+.+.+      ++.|.|.+++.+|+|
T Consensus         6 ~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~G   85 (222)
T 4i0k_A            6 VALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTDEG   85 (222)
T ss_dssp             CCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGGCS
T ss_pred             EEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccccCE
Confidence            7889999999999977642  12367999997722  11  0     012357787766      788999999999998


Q ss_pred             cceEEEeecccCCeEEecccceEEEEecC
Q psy5694          93 KSYRCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        93 ~~Y~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                       .|+|.+.|.-  .  .+. ...|.|.++
T Consensus        86 -~Y~C~~~~~~--~--~~~-~~~l~V~~~  108 (222)
T 4i0k_A           86 -SYTCFVSIQD--F--DSA-AVSLQVAAP  108 (222)
T ss_dssp             -CEEEEEEECC--C--CCC-CCCCCCCBC
T ss_pred             -EEEEEEEeCC--C--ceE-EEEEEEEcC
Confidence             9999999863  2  122 445555543

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=98.94  E-value=4.4e-10  Score=79.67  Aligned_cols=70  Identities=9%  Similarity=0.069  Sum_probs=52.0

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeeccc--CCCceEEEccCccEEEeccCCCCCCcceEEEeecccCC
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT--DTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITG  105 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~--~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltg  105 (129)
                      .+..|.++.|.|.+.+.|+   +.++|.+++..+....  ..++.+.  ..+.|.|.+++.+|+| .|+|+|.|..+.
T Consensus       129 ~~~~~~~~~~~c~~~g~p~---p~i~W~~~~~~~~~~~~~~~~~~~~--~~s~L~i~~~~~~d~g-~YtC~a~N~~g~  200 (218)
T 4frw_A          129 EEGQGLTLAASCTAEGSPA---PSVTWDTEVKGTTSSRSFKHSRSAA--VTSEFHLVPSRSMNGQ-PLTCVVSHPGLL  200 (218)
T ss_dssp             ETTCCSEEEEEEEEEEBSC---CEEEEEESSCCEEEEEEEECSSSEE--EEEEEEECCCGGGTTC-EEEEEEECTTCS
T ss_pred             eeeeccccceeeeccCCcC---ceEEEEECCcccccCceEecCCcEE--EEEEEEEeeCCHHhCe-EEEEEEEeCCCC
Confidence            6778999999999987764   6799999986664320  0111121  2357999999999997 999999998733

>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate binding, immune system; HET: SIA GAL GLC; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A* 1qfp_A 2bve_A* 1url_A*

Probab=98.94  E-value=7.1e-09  Score=70.18  Aligned_cols=98  Identities=14%  Similarity=0.188  Sum_probs=62.6

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCC---CceeEeEEeecce----eeecc-------cCCCceEEEcc-----CccE
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMS---EYIIVTSWIQDDV----NIYLN-------TDTGGKYVVLS-----SGDL   81 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~---~~v~v~sW~~d~~----~i~~~-------~~~~~ry~vlp-----sG~L   81 (129)
                      |.++....+.|.+|.+|.|.|.+.....   .....+.|.+...    .|...       ....+|+.+..     +..|
T Consensus         2 ~~v~~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~~v~W~~~~~g~~~~v~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   81 (119)
T 1qfo_A            2 WGVSSPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNL   81 (119)
T ss_dssp             CEEECCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCE
T ss_pred             CeEEcCCEEEEecCCcEEEEEEeeCCCccCCCCCeEEEEEEcCCCCCCEEEECCCCcccCccceeeEEEeCCCCCCEEEE
Confidence            4555555558999999999999743211   1124589998651    23211       12247888753     3469


Q ss_pred             EEeccCCCCCCcceEEEeecccCCeEEecccceEEEEec
Q psy5694          82 YVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        82 ~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      .|+|++.+|+| .|.|.+.+.-... .......+|.|++
T Consensus        82 ~I~~v~~~Dsg-~Y~C~v~~~~~~~-~~~~~~~~L~V~~  118 (119)
T 1qfo_A           82 LLKDLKPEDSG-TYNFRFEISDSNR-WLDVKGTTVTVTT  118 (119)
T ss_dssp             EECSCCGGGCE-EEEEEEECC-CCE-EECSSCEEEEEEC
T ss_pred             EEccCCcccCc-eEEEEEEeCCCce-ecccCCeEEEEec
Confidence            99999999997 9999998753122 1121255888875

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=98.94  E-value=1.8e-09  Score=92.78  Aligned_cols=87  Identities=22%  Similarity=0.330  Sum_probs=70.8

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCcc---EEEeccCCCCCCcceE
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVFNATPNDGYKSYR   96 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~---L~I~nv~~~D~g~~Y~   96 (129)
                      .|...+.+. .+.+|.+|.|.|.+-+.|+   |.++|++++..|.    .+.||.+.-+|.   |.|.++..+|+| .|+
T Consensus       484 ~~~~~~~~~-~v~~G~~~~~~~~v~g~P~---P~v~W~k~~~el~----~s~~~~i~~~~~~~~L~I~~~~~~D~G-~Yt  554 (573)
T 3uto_A          484 RFIVKPYGT-EVGEGQSANFYCRVIASSP---PVVTWHKDDRELK----QSVKYMKRYNGNDYGLTINRVKGDDKG-EYT  554 (573)
T ss_dssp             EEEECCCCE-EECTTSCEEEEEEEECSSC---CEEEEEETTEECC----SSSSEEEEEETTEEEEEECSCCGGGCE-EEE
T ss_pred             ccccCCCCc-EEeCCCcEEEEEEEEccCC---CeEEEEECCEEcc----cCCcEEEEEcCCEEEEEEcCCCcccCc-EEE
Confidence            456667777 8999999999999988874   6899999998884    357888864444   999999999997 999


Q ss_pred             EEeecccCCeEEecccceEEEEe
Q psy5694          97 CRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        97 C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      |+|.|.+ |+.  +. .+.|.||
T Consensus       555 ~~A~N~~-G~~--~~-~v~l~Vt  573 (573)
T 3uto_A          555 VRAKNSY-GTK--EE-IVFLNVT  573 (573)
T ss_dssp             EEEEETT-EEE--EE-EEEEEEC
T ss_pred             EEEEeCC-CcE--EE-EEEEEEC
Confidence            9999998 884  33 4577775

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=98.94  E-value=2.6e-09  Score=79.32  Aligned_cols=89  Identities=19%  Similarity=0.292  Sum_probs=62.0

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc----cCCCceEEEccCc---cEEEeccCCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN----TDTGGKYVVLSSG---DLYVFNATPNDG   91 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~----~~~~~ry~vlpsG---~L~I~nv~~~D~   91 (129)
                      +.+. .|.+|++|.|.|.+.+.+.   +.+.|++++     ..| ...    ....+||.+..++   .|.|.+++.+|+
T Consensus        11 p~~~-~v~~G~~v~L~C~~~~~~~---~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   86 (250)
T 3esu_F           11 TSSL-SASLGDRVTISCRASQDIR---NYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQEDI   86 (250)
T ss_dssp             CSEE-EECTTCCEEEEEEESSCCT---TCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCEE-EeeCCCcEEEEEEecccCC---ceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhhC
Confidence            4444 7899999999999987765   368999853     111 110    1235788776544   799999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEecC
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      | .|.|.+.|.. +. ..+. ..+|.|..+
T Consensus        87 G-~Y~C~~~n~~-~~-~~~~-~~~l~V~~~  112 (250)
T 3esu_F           87 G-TYFCQQGNTL-PW-TFGG-GTKLEIRRG  112 (250)
T ss_dssp             E-EEEEEECSSS-SC-EECC-CEEEEEC--
T ss_pred             E-EEEEEEeeCC-Cc-eECC-CEEEEEECC
Confidence            7 9999999975 32 2333 557888764

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=98.94  E-value=8.2e-10  Score=78.56  Aligned_cols=71  Identities=20%  Similarity=0.243  Sum_probs=53.1

Q ss_pred             eEEEeCCeEEEEeeCCCCCCCceeEeEEeeccee-eecc---------cCCCceEEEc----cCcc--EEEeccCCCCCC
Q psy5694          29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVN-IYLN---------TDTGGKYVVL----SSGD--LYVFNATPNDGY   92 (129)
Q Consensus        29 ~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~-i~~~---------~~~~~ry~vl----psG~--L~I~nv~~~D~g   92 (129)
                      +.|.+|+++.|.|.+.+.+   .+.+.|.+++.. +...         ....+|+.+.    .+|.  |.|.+++.+|+|
T Consensus         5 v~~~~G~~v~L~C~~~~~~---~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G   81 (184)
T 2ny1_B            5 VLGKKGDTVELTCTASQKK---SIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSD   81 (184)
T ss_dssp             EEEETTSCEEECCBCSSSS---CCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCE
T ss_pred             EEEeCCCCEEEEEEEcCCC---ceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCE
Confidence            4789999999999988555   357899998742 2110         1124566654    4555  999999999997


Q ss_pred             cceEEEeeccc
Q psy5694          93 KSYRCRTVNKI  103 (129)
Q Consensus        93 ~~Y~C~a~N~l  103 (129)
                       .|+|.+.|..
T Consensus        82 -~Y~C~~~~~~   91 (184)
T 2ny1_B           82 -TYICEVEDQK   91 (184)
T ss_dssp             -EEEEEETTEE
T ss_pred             -EEEEEEEcCC
Confidence             9999999874

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=98.94  E-value=9.3e-10  Score=84.66  Aligned_cols=88  Identities=17%  Similarity=0.109  Sum_probs=62.3

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEee
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      +...+. . .|.+|+++.|.|.+.+.+    +.+.|++|+..+.+     .......++.|.|.+++.+|+| .|+|.|.
T Consensus        27 i~~~p~-~-~v~~G~~v~L~C~~~~~~----~~~~W~k~g~~~~~-----~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~   94 (316)
T 3vh8_G           27 LSAWPS-A-VVPRGGHVTLRCHYRHRF----NNFMLYKEDRIHIP-----IFHGRIFQESFNMSPVTTAHAG-NYTCRGS   94 (316)
T ss_dssp             EEEESC-S-EEETTSCEEEEEEBTTBC----CSEEEEESSCSSSC-----HHHHCCBSSCEEECSCCGGGCE-EEEEEEB
T ss_pred             eeccCC-C-ccCCCCCEEEEEEccCCC----ceEEEEeCCCccce-----eecCCcceEEEEECCCCcccCe-EEEEEEE
Confidence            444554 4 688999999999998763    45899999855432     1111235789999999999997 9999998


Q ss_pred             cccC--CeEEecccceEEEEecC
Q psy5694         101 NKIT--GESQASVFQTRLSITGK  121 (129)
Q Consensus       101 N~lt--ge~k~S~~~~~L~V~ep  121 (129)
                      |..+  +....|. ...|.|.++
T Consensus        95 ~~~~~~~~~~~s~-~~~l~V~~~  116 (316)
T 3vh8_G           95 HPHSPTGWSAPSN-PVVIMVTGN  116 (316)
T ss_dssp             CSSSSSSBCCCCC-CEEEEEECS
T ss_pred             cCCCCcceecCCC-cEEEEEecC
Confidence            7542  2223344 667887653

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=98.93  E-value=2.3e-09  Score=78.46  Aligned_cols=93  Identities=14%  Similarity=0.183  Sum_probs=61.3

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e---ee-e--cc---------cCCCceEEEcc-----CccE
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NI-Y--LN---------TDTGGKYVVLS-----SGDL   81 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~---~i-~--~~---------~~~~~ry~vlp-----sG~L   81 (129)
                      ++... .|.+|.+|.|.|.+.+.+.. .+.+.|++++  .   .| .  ..         ....+|+.+..     ++.|
T Consensus         6 ~p~~~-~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L   83 (222)
T 1q9r_B            6 ESGGG-LVQSGGSLRLSCATSGFTFT-DYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYL   83 (222)
T ss_dssp             EECCC-EECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEE
T ss_pred             cCCce-eEcCCCEEEEEEEecCccCC-CCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEE
Confidence            34555 88999999999999765322 2568998853  1   11 1  00         01247888875     3489


Q ss_pred             EEeccCCCCCCcceEEEeecccCCeE--EecccceEEEEec
Q psy5694          82 YVFNATPNDGYKSYRCRTVNKITGES--QASVFQTRLSITG  120 (129)
Q Consensus        82 ~I~nv~~~D~g~~Y~C~a~N~ltge~--k~S~~~~~L~V~e  120 (129)
                      .|+|++.+|+| .|.|.+.|......  ..+. ...|.|..
T Consensus        84 ~I~~v~~~D~G-~Y~C~~~~~~~~~~~~~~~~-~~~l~V~~  122 (222)
T 1q9r_B           84 QMNTLRAEDSA-TYYCARDHDGYYERFSYWGQ-GTLVTVSA  122 (222)
T ss_dssp             EECSCCGGGCE-EEEEEECCCSSCCSCCCBCC-CEEEEECS
T ss_pred             EECcCCcccCe-EEEEEEeccCCcccceEeCC-ceEEEecc
Confidence            99999999997 99999998652110  1122 44777765

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=98.93  E-value=6.8e-10  Score=74.94  Aligned_cols=80  Identities=20%  Similarity=0.217  Sum_probs=56.0

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEc-cCccEEEeccCCCCCCcceEEEeecccC-CeE
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL-SSGDLYVFNATPNDGYKSYRCRTVNKIT-GES  107 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl-psG~L~I~nv~~~D~g~~Y~C~a~N~lt-ge~  107 (129)
                      .|..|++++|.|..+..+    ....|++++..+..     +++... .+..|.|.+|+.+|+| .|+|.+.|... ...
T Consensus        15 ~v~~G~~VtL~C~~~~~~----~~~~w~k~g~~~~~-----~~~~~~~~~~~l~I~~v~~~dsG-~Y~C~~~n~~~~~~s   84 (105)
T 2vsd_A           15 GVSLGDTVTLRCHLPRMA----AWVQLWLNGTLRFD-----KEKDKEQDAAEFSFAVTNLEDAG-TYQCRYQVSEPLWTS   84 (105)
T ss_dssp             SCCTTCEEEEEEECCSSC----EEEEEEETTEEEEE-----EEECTTCSEEEEEEECCSGGGCE-EEEEEEEEETTEEEC
T ss_pred             CcCcCCCEEEEEEcCCCC----cEEEEEECCcccee-----eeccCCCCEEEEEECCCCHHHCe-EEEEEEEcCCCCccc
Confidence            478899999999987643    35689999865432     222111 2357999999999997 99999999641 122


Q ss_pred             EecccceEEEEec
Q psy5694         108 QASVFQTRLSITG  120 (129)
Q Consensus       108 k~S~~~~~L~V~e  120 (129)
                      ..|+ +..|.|+.
T Consensus        85 ~~Sd-pl~L~V~~   96 (105)
T 2vsd_A           85 NQSD-PVELVLTI   96 (105)
T ss_dssp             CCCC-CEEECCC-
T ss_pred             CCCC-CEEEEEEE
Confidence            3465 77888764

>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}

Probab=98.93  E-value=8e-09  Score=72.10  Aligned_cols=98  Identities=16%  Similarity=0.258  Sum_probs=64.8

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc-----cCCCceEEEc--cC---ccEEEeccC
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN-----TDTGGKYVVL--SS---GDLYVFNAT   87 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~-----~~~~~ry~vl--ps---G~L~I~nv~   87 (129)
                      .+... .|.+|.+|.|.|.+.....  ...+.|++..     ..| .-.     ....+||.+.  ++   ..|.|++++
T Consensus         7 ~P~~~-~v~~G~~vtL~C~~s~~~~--~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~   83 (129)
T 3rrq_A            7 SPALL-VVTEGDNATFTCSFSNTSE--SFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFHMSVVRAR   83 (129)
T ss_dssp             ECSEE-EEETTSCEEEEEECCCCC---CEEEEEEEEESTTSCEEEEEETC--------CCEEEEECTTSSEEEEEESSCC
T ss_pred             CCCEE-EEeCCCCEEEEeEecCCCC--CcEEEEeEeCCCCCccEEEEEcCCccCCCcCCcEEEEEcCCCCEEEEEECCCC
Confidence            34455 8899999999999876542  2468998742     112 111     1124689886  32   359999999


Q ss_pred             CCCCCcceEEEeecccCCe-EEecccceEEEEecCCCCCC
Q psy5694          88 PNDGYKSYRCRTVNKITGE-SQASVFQTRLSITGKLKSLC  126 (129)
Q Consensus        88 ~~D~g~~Y~C~a~N~ltge-~k~S~~~~~L~V~ep~~~~~  126 (129)
                      .+|+| .|.|.+.|..... ...+. .++|.|++.....|
T Consensus        84 ~~Dsg-~Y~C~~~~~~~~~~~~~s~-~~~L~V~~~~~~~p  121 (129)
T 3rrq_A           84 RNDSG-TYLCGAISLAPKLQIKESL-RAELRVTERRAEVP  121 (129)
T ss_dssp             GGGCE-EEEEEEEECGGGCEEEECC-CEEEEEECCCC---
T ss_pred             hhHCE-EEEEEEEecCCCceeeEec-eEEEEEecCccccC
Confidence            99997 9999999976433 22344 78999997655444

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=98.93  E-value=1.4e-09  Score=89.18  Aligned_cols=83  Identities=14%  Similarity=0.192  Sum_probs=59.5

Q ss_pred             eeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccC------CCceEEEccCccEEEeccCCCCCCcceEEEee
Q psy5694          27 YEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTD------TGGKYVVLSSGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        27 ~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~------~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      +. .+.+|+++.|.|.+.+..+  .+.++|++++..|.....      .+.+ ....++.|.|.+|+.+|+| .|+|.|.
T Consensus       236 ~~-~v~~G~~v~L~C~~~g~~p--~p~i~W~k~g~~l~~~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G-~Y~C~A~  310 (423)
T 3qs7_E          236 QL-FLKVGEPLWIRCKAVHVNH--GFGLTWELENKALEEGNYFEMSTYSTNR-TMIRILFAFVSSVARNDTG-YYTCSSS  310 (423)
T ss_dssp             EE-EEETTSCEEEEEEEEESSS--CCCEEEEESSSBCCGGGEEEEEEEETTT-EEEEEEEEEESSCCTTTCE-EEEEEET
T ss_pred             ce-EEeCCCeEEEEEEEEcCCC--CcEEEEEECCEEccccceeecccccCCc-eeEEEEEEEEeecCHHHCE-EEEEEEe
Confidence            45 7899999999999986322  256899999976632100      0111 1344678999999999997 9999999


Q ss_pred             cccCCeEEecccceEEEEecC
Q psy5694         101 NKITGESQASVFQTRLSITGK  121 (129)
Q Consensus       101 N~ltge~k~S~~~~~L~V~ep  121 (129)
                      |.      .+. .+.|.|.++
T Consensus       311 N~------~~~-~~~L~V~~~  324 (423)
T 3qs7_E          311 KH------PSQ-SALVTIVEK  324 (423)
T ss_dssp             TE------EEE-EEEEEEESS
T ss_pred             cC------CCc-eEEEEEEeC
Confidence            98      233 567888754

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.93  E-value=2.5e-09  Score=86.10  Aligned_cols=93  Identities=13%  Similarity=0.227  Sum_probs=63.9

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--ee---e-ecc---------cCCCceEEEcc-----CccEEE
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VN---I-YLN---------TDTGGKYVVLS-----SGDLYV   83 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~~---i-~~~---------~~~~~ry~vlp-----sG~L~I   83 (129)
                      ++... .|.+|++|+|.|.+.+.+.. .+.+.|++++  ..   | ...         ....+||.+..     ++.|.|
T Consensus         6 ~p~~~-~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (444)
T 1igt_B            6 ESGGG-LVQPGGSLKLSCATSGFTFS-DYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQM   83 (444)
T ss_dssp             EECCC-EECTTCCEEEEEEEESSCGG-GSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEE
T ss_pred             cCCCe-EEcCCCCEEEEEEcCCCccC-CceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEE
Confidence            34445 89999999999999765322 2468998853  21   1 110         11246898864     358999


Q ss_pred             eccCCCCCCcceEEEeecccCCeEEecccceEEEEec
Q psy5694          84 FNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        84 ~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      .+++.+|+| .|+|.+.|..+.....+. ...|.|.+
T Consensus        84 ~~v~~~D~G-~Y~C~~~~~~~~~~~~~~-~~~l~V~~  118 (444)
T 1igt_B           84 SRLKSEDTA-MYYCARHGGYYAMDYWGQ-GTTVTVSS  118 (444)
T ss_dssp             CSCCGGGCE-EEEEEEECSSSCEEEEBC-CEEEEECS
T ss_pred             CCCCHHHCE-EEEEEEecCCcccccccC-cEEEEecC
Confidence            999999997 999999997633223343 56888875

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=98.93  E-value=3.2e-09  Score=79.82  Aligned_cols=93  Identities=18%  Similarity=0.181  Sum_probs=56.8

Q ss_pred             EeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeec---c--eeeeccc----------CC-CceEEEc----cCccEE
Q psy5694          23 INVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD---D--VNIYLNT----------DT-GGKYVVL----SSGDLY   82 (129)
Q Consensus        23 ~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d---~--~~i~~~~----------~~-~~ry~vl----psG~L~   82 (129)
                      ..+.+. .|.+|++|.|.|.+.+.+   .+.+.|++.   .  ..|....          .. ++++...    .++.|.
T Consensus         7 ~~p~~~-~v~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   82 (259)
T 3omz_A            7 GRTKSV-IRQTGSSAEITCDLAEGS---TGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMI   82 (259)
T ss_dssp             ----CE-EEETTCCEEEECCC--------CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEE
T ss_pred             cCCcee-EecCCCcEEEEEEEccCC---CcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEE
Confidence            344555 899999999999998765   357999882   1  1221100          01 1233221    244699


Q ss_pred             EeccCCCCCCcceEEEeecccCCeEEecccceEEEEecC
Q psy5694          83 VFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        83 I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      |.||+.+|+| .|.|.+.|..+.....+. ...|.|.++
T Consensus        83 I~~v~~~DsG-~Y~C~~~~~~~~~~~~~~-~~~l~V~~~  119 (259)
T 3omz_A           83 LRNLIENDSG-VYYCATWDQNYYKKLFGS-GTSLVVTDK  119 (259)
T ss_dssp             ESSCCGGGCE-EEEEEEECTTSSCEEECC-CEEEEEEC-
T ss_pred             ECCCCcccCE-EEEEEEeeCCccccEECC-CCEEEEecC
Confidence            9999999997 999999997643434454 668888875

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=98.93  E-value=1.9e-09  Score=80.36  Aligned_cols=86  Identities=16%  Similarity=0.247  Sum_probs=58.1

Q ss_pred             eeeeeEEEeCCeEEEEeeC---CCCCCCceeEeEEeecc-ee------ee---------cc--cCCCceEEE-----ccC
Q psy5694          25 VNYEHNVILGNTAVLRCQI---PSYMSEYIIVTSWIQDD-VN------IY---------LN--TDTGGKYVV-----LSS   78 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~v---p~~~~~~v~v~sW~~d~-~~------i~---------~~--~~~~~ry~v-----lps   78 (129)
                      +... .+..|.++.|.|.+   .+.+   .+.++|++++ ..      +.         +.  ..-..|+.+     ..+
T Consensus       125 p~~~-~v~~G~~v~L~C~~~~~~~~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  200 (268)
T 3mj6_A          125 PRDL-RVRVGDTTQMRCSIQSTEEKR---VTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRND  200 (268)
T ss_dssp             CSEE-EEETTCCEEECCBCEESSSSC---CCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTB
T ss_pred             CCcc-ccccCCcEEEEEEecCCCCCC---ccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCe
Confidence            3445 88999999999999   4434   4679999943 11      10         00  001124444     457


Q ss_pred             ccEEEeccCCCCCCcceEEEeecccCCeEEecccceEEEEe
Q psy5694          79 GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        79 G~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      +.|.|.+++.+|+| .|+|.|.|.. |+.  +. ...|.|.
T Consensus       201 ~~L~i~~v~~~D~G-~Y~C~a~n~~-g~~--~~-~~~l~V~  236 (268)
T 3mj6_A          201 GSIKLQTVKESDQG-IYTCSIYVGK-LES--RK-TIVLHVV  236 (268)
T ss_dssp             CCEEECSCCGGGCE-EEEEEEEETT-EEE--EE-EEEEEEE
T ss_pred             EEEEECcCChhhCe-EEEEEEEcCC-ceE--EE-EEEEEEE
Confidence            89999999999997 9999999976 553  33 4477773

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=98.93  E-value=5.9e-09  Score=78.19  Aligned_cols=92  Identities=15%  Similarity=0.193  Sum_probs=64.4

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeec--c---eee-ecc----cCCCceEEEccCcc---EEEeccC
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD--D---VNI-YLN----TDTGGKYVVLSSGD---LYVFNAT   87 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d--~---~~i-~~~----~~~~~ry~vlpsG~---L~I~nv~   87 (129)
                      +...+.+. .+.+|++|.|.|.+.+.+.  .+.+.|++.  +   ..| ...    ....+||.+..++.   |.|.+++
T Consensus       152 ~~~~~~~~-~v~~G~~v~L~C~~~~~~~--~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~  228 (256)
T 3juy_B          152 LTQAPGTL-SLSPGERATFSCRSSHSIR--SRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVE  228 (256)
T ss_dssp             EEEECSEE-EECTTSCEEEEEEESSCCT--TCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             EEecCCeE-EEeCCCCEEEEEEECCCcC--CeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCC
Confidence            44455566 8999999999999987553  256899883  2   111 110    11347888765554   9999999


Q ss_pred             CCCCCcceEEEeecccCCeEEecccceEEEEe
Q psy5694          88 PNDGYKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        88 ~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      .+|+| .|.|.|.|.  +....+. ..+|.|+
T Consensus       229 ~~DsG-~Y~C~~~~~--~~~~~g~-gt~l~V~  256 (256)
T 3juy_B          229 PEDFA-LYYCQVYGA--SSYTFGQ-GTKLERK  256 (256)
T ss_dssp             GGGCS-EEEEEECCS--SCCEECC-CEEEEEC
T ss_pred             HhHCE-EEEEEEeeC--CCceEcC-CEEEEEC
Confidence            99998 999999995  4444555 6688774

>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*

Probab=98.92  E-value=4.6e-09  Score=71.80  Aligned_cols=93  Identities=18%  Similarity=0.215  Sum_probs=60.1

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc----cCCCceEEEccCc---cEEEeccCCCCCCcceE
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN----TDTGGKYVVLSSG---DLYVFNATPNDGYKSYR   96 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~----~~~~~ry~vlpsG---~L~I~nv~~~D~g~~Y~   96 (129)
                      .+.+|++|.|.|.+......-...+.|++..     ..| ...    ....+||.+..++   .|.|+|++.+|+| .|.
T Consensus        11 ~~~~G~~v~L~C~~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~~~~~DsG-~Y~   89 (120)
T 1oaq_L           11 TTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEA-IYF   89 (120)
T ss_dssp             EECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCE-EEE
T ss_pred             EEcCCCCEEEEEEeCCCccCCCCEEEEEEeCCCCCCeEEEEEcCccCCCCCCceEEecCCCeEEEEECCCChhhCe-EEE
Confidence            8899999999999876541012458998843     122 110    1124788776433   6999999999997 999


Q ss_pred             EEeecccCCeEEecccceEEEEecCCCCCC
Q psy5694          97 CRTVNKITGESQASVFQTRLSITGKLKSLC  126 (129)
Q Consensus        97 C~a~N~ltge~k~S~~~~~L~V~ep~~~~~  126 (129)
                      |.+.+.  +...-.. ..+|.|.+.....|
T Consensus        90 C~~~~~--~~~~fg~-gt~L~V~~~~~~~p  116 (120)
T 1oaq_L           90 CALWYS--NHLVFGG-GTKLTVLGQPKSSP  116 (120)
T ss_dssp             EEEEET--TEEEECC-CEEEEECC------
T ss_pred             EEEccC--CCcEECC-CEEEEEcCCCCCCC
Confidence            999976  3333343 66999987665544

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=98.92  E-value=3.2e-09  Score=82.05  Aligned_cols=100  Identities=14%  Similarity=0.143  Sum_probs=64.9

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCc---eeEeEEeecc--e---ee-ecc----cCCCceEEEccC---ccEEEeccCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEY---IIVTSWIQDD--V---NI-YLN----TDTGGKYVVLSS---GDLYVFNATP   88 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~---v~v~sW~~d~--~---~i-~~~----~~~~~ry~vlps---G~L~I~nv~~   88 (129)
                      +... .+.+|+++.|.|.+.+.+...   .+.+.|++++  .   .| ...    ....+||.+..+   +.|.|.+++.
T Consensus       166 p~~~-~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  244 (291)
T 2gki_A          166 PSSL-AVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQA  244 (291)
T ss_dssp             CSEE-EEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             CCEE-EEcCCCcEEEEEEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCH
Confidence            3344 789999999999998765310   0268999963  1   22 110    012568877543   4699999999


Q ss_pred             CCCCcceEEEeecccCCeEEecccceEEEEecCCCCCCCCC
Q psy5694          89 NDGYKSYRCRTVNKITGESQASVFQTRLSITGKLKSLCTSY  129 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~~~~~~~~  129 (129)
                      +|+| .|.|.|.|.  ++..-.+ ..+|.|+.....-|+.|
T Consensus       245 ~DsG-~Y~C~a~~~--~~~~fg~-gt~l~v~~~~~~~~~~~  281 (291)
T 2gki_A          245 EDLA-VYYCKQSYY--HMYTFGS-GTKLEIKHHHHHGLVPR  281 (291)
T ss_dssp             GGCE-EEEEEEEET--TEEEECC-CEEEEEECC--------
T ss_pred             HHCE-EEEEEEccC--CceEEcC-CEEEEEEeeEcCCCcee
Confidence            9997 999999985  4555555 66999998877777655

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=98.92  E-value=2.6e-09  Score=83.59  Aligned_cols=89  Identities=16%  Similarity=0.274  Sum_probs=61.2

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--eee----ec---------ccCCCceEEEccC-----ccEEEe
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VNI----YL---------NTDTGGKYVVLSS-----GDLYVF   84 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~~i----~~---------~~~~~~ry~vlps-----G~L~I~   84 (129)
                      +... .|.+|++|.|.|.+.+.+.. .+.+.|++++  ..+    ..         .....+||.+..+     +.|.|+
T Consensus         7 p~~~-~v~~G~~v~L~C~~~~~~~~-~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (344)
T 1za6_B            7 SGAE-VVKPGASVKISCKASGYTFT-DHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELS   84 (344)
T ss_dssp             CCCE-EECTTCCEEEEEEEESSCTT-SSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred             CCCe-EEeCCCcEEEEEEcCCcccc-ccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEEC
Confidence            3444 88999999999999765311 2568999873  221    10         0123578988753     579999


Q ss_pred             ccCCCCCCcceEEEeecccCCeEEecccceEEEEec
Q psy5694          85 NATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        85 nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      ||+.+|+| .|+|.+.|.. +.  .+. ...|.|.+
T Consensus        85 ~v~~~D~G-~Y~C~~~n~~-~~--~~~-~~~l~V~~  115 (344)
T 1za6_B           85 SLRSEDTA-VYFCTRSLNM-AY--WGQ-GTLVTVSS  115 (344)
T ss_dssp             SCCGGGCE-EEEEEETTTT-CE--ECC-CEEEEECS
T ss_pred             CCCcccCE-EEEEEEecCc-ce--ecC-cEEEEEec
Confidence            99999997 9999999943 22  233 45777774

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=98.91  E-value=4.9e-09  Score=72.51  Aligned_cols=96  Identities=21%  Similarity=0.229  Sum_probs=63.2

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCC-CceeEeEEeecc-----eee-ecc----cCCCceEEEccC---ccEEEeccCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMS-EYIIVTSWIQDD-----VNI-YLN----TDTGGKYVVLSS---GDLYVFNATPND   90 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~-~~v~v~sW~~d~-----~~i-~~~----~~~~~ry~vlps---G~L~I~nv~~~D   90 (129)
                      +... .|.+|.+|.|.|.+...+. .-...+.|++..     ..| ...    ....+||.+..+   ..|.|+|++.+|
T Consensus         8 p~~v-~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~sL~I~~v~~~D   86 (126)
T 4ffy_L            8 PASL-AVSLGQRATISCRASESVDHYGNSFIYWYQQKPGQPPKLLIYLASNLESGVPARFSGSGSETDFTLTIDSVETDD   86 (126)
T ss_dssp             CSEE-EEETTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CCeE-EEeCCCCEEEEEecCCCcccCCCceEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEecCCCEEEEEECCCCHHH
Confidence            3344 8999999999999876541 013568999842     222 111    123568877643   359999999999


Q ss_pred             CCcceEEEeecccCCeEEecccceEEEEecCCCCC
Q psy5694          91 GYKSYRCRTVNKITGESQASVFQTRLSITGKLKSL  125 (129)
Q Consensus        91 ~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~~~~  125 (129)
                      +| .|.|.+.|..  ...... ..+|+|++..++.
T Consensus        87 sG-~Y~C~~~~~~--~~~fg~-gT~L~V~~~g~~~  117 (126)
T 4ffy_L           87 AA-TYYCQQNNED--PYTFGG-GTKLEIKGGGGSG  117 (126)
T ss_dssp             CE-EEEEEECSSS--SCEECC-CEEEEEEC-----
T ss_pred             CE-EEEEEEecCC--CcEECC-CEEEEEecCCCCC
Confidence            97 9999999863  333444 6799999765443

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=98.91  E-value=2.5e-09  Score=80.74  Aligned_cols=69  Identities=20%  Similarity=0.171  Sum_probs=56.9

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc---cEEEeccCCCCCCcceEEEeecccCCe
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGE  106 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG---~L~I~nv~~~D~g~~Y~C~a~N~ltge  106 (129)
                      .|.+|+.+.|.|......+  .+.++|++++..|.    .++||.+..+|   .|.|.+++.+|+| .|+|.|.|.. |.
T Consensus        12 ~v~eg~~v~l~~~~~~~~p--~~~v~W~k~~~~i~----~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~~~n~~-g~   83 (312)
T 2y23_A           12 NVDDDGVISLNFECDKMTP--KSEFSWSKDYVSTE----DSPRLEVESKGNKTKMTFKDLGMDDLG-IYSCDVTDTD-GI   83 (312)
T ss_dssp             EECTTCCEEEEEECSSCCT--TCCEEEEETTEECT----TCTTEEEEEETTEEEEEESSCCGGGCE-EEEEEESSSC-CC
T ss_pred             EEecCCeEEEEEEEeCCCC--CcEEEEEECCEECC----CCCCEEEEEeCCEEEEEECcCCccCCE-EEEEEEEeCC-Cc
Confidence            6788999999999874322  36799999998874    35788887766   8999999999997 9999999987 44

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=98.91  E-value=4e-09  Score=81.10  Aligned_cols=94  Identities=17%  Similarity=0.230  Sum_probs=63.2

Q ss_pred             EeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e---eee-cc---------cCCCceEEEcc-----CccEE
Q psy5694          23 INVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NIY-LN---------TDTGGKYVVLS-----SGDLY   82 (129)
Q Consensus        23 ~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~---~i~-~~---------~~~~~ry~vlp-----sG~L~   82 (129)
                      .++... .|.+|.+|.|.|.+.+.+.+ .+.+.|++++  .   .|. ..         ....+||.+..     ++.|.
T Consensus        11 ~~p~~~-~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   88 (261)
T 2xqy_G           11 QQPGAE-LVKPGASVKMSCKASGYSFT-SYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQ   88 (261)
T ss_dssp             ECCSEE-EECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEE
T ss_pred             ECCCCE-EEcCCCCEEEEEEeCCcccC-CceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEE
Confidence            345555 89999999999998765422 2568998863  1   111 00         01247888864     35799


Q ss_pred             EeccCCCCCCcceEEEeecccCCeEEecccceEEEEec
Q psy5694          83 VFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        83 I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      |+||+.+|+| .|.|.+.|...+....+. ...|.|..
T Consensus        89 I~~v~~~DsG-~Y~C~~~~~~~~~~~~~~-~~~L~V~~  124 (261)
T 2xqy_G           89 LSSLTSEDSA-VYYCGRLGYVYGFDYWGQ-GTTLTVSS  124 (261)
T ss_dssp             ECSCCGGGCE-EEEEEEECTTSSEEEECC-CEEEEECS
T ss_pred             EcCCCcccCe-EEEEEEecCCCcceEECC-CEEEEEcc
Confidence            9999999997 999999986421222233 45788875

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=98.91  E-value=2.1e-09  Score=81.03  Aligned_cols=89  Identities=18%  Similarity=0.226  Sum_probs=63.3

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEee--cceee----ecc----cCCCceEEEccC---ccEEEeccCCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQ--DDVNI----YLN----TDTGGKYVVLSS---GDLYVFNATPNDG   91 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~--d~~~i----~~~----~~~~~ry~vlps---G~L~I~nv~~~D~   91 (129)
                      +... .|.+|++|.|.|.+.+.++   +.+.|++  ++..+    ...    ....+||.+..+   +.|.|.+++.+|+
T Consensus       146 p~~~-~v~~G~~v~L~C~~~~~~~---~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~  221 (257)
T 1f3r_B          146 PSLL-SASVGDRVTLSCKGSQNIN---NYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDV  221 (257)
T ss_dssp             TSEE-CCCTTCCEEEEEECSSCCB---TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGC
T ss_pred             CCEE-EEcCCCCEEEEEEECCcCC---CcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhC
Confidence            3344 7889999999999987764   3689999  44322    110    012468877543   4699999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEecCC
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      | .|.|.|.|..   ...+. ..+|.|+++.
T Consensus       222 G-~Y~C~a~n~~---~~~g~-gt~l~V~~~~  247 (257)
T 1f3r_B          222 A-TYFCYQYNNG---YTFGA-GTKLELKAAE  247 (257)
T ss_dssp             S-EEEEEEESSS---EEECC-CCEECCSSSC
T ss_pred             E-EEEEEEeCCC---CeECC-CEEEEEeCCC
Confidence            8 9999999974   33444 6688887654

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=98.91  E-value=2.9e-09  Score=89.30  Aligned_cols=78  Identities=23%  Similarity=0.256  Sum_probs=61.9

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEee
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      +...+.+. .+..|+.+.|.|.+.+.|+   +.++|++|+..|.            .++.|.|.+++.+|.| .|+|.|.
T Consensus       562 ~~~~~~~~-~v~~g~~~~l~C~~~g~p~---p~v~W~~~g~~i~------------~~~~L~i~~~~~~d~G-~Y~C~a~  624 (642)
T 1e07_A          562 PIISPPDS-SYLSGANLNLSCHSASNPS---PQYSWRINGIPQQ------------HTQVLFIAKITPNNNG-TYACFVS  624 (642)
T ss_pred             ceecCCce-eEEcCCcEEEEEEeccCCC---CeEEEEECCEECc------------cCceEEECcccccCCe-EEEEEEE
Confidence            44455666 8999999999999988774   5799999987663            2468999999999998 9999999


Q ss_pred             cccCCeEEecccceEEEEe
Q psy5694         101 NKITGESQASVFQTRLSIT  119 (129)
Q Consensus       101 N~ltge~k~S~~~~~L~V~  119 (129)
                      |.+ |+...   .+.|.|+
T Consensus       625 N~~-G~~~~---s~~l~V~  639 (642)
T 1e07_A          625 NLA-TGRNN---SIVKSIT  639 (642)
T ss_pred             ecc-cCcce---eEEEEEE
Confidence            998 55333   4466665

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=98.91  E-value=7e-09  Score=86.97  Aligned_cols=80  Identities=18%  Similarity=0.267  Sum_probs=63.6

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc-CccEEEeccCCCCCCcceEEEeecccCCeEE
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS-SGDLYVFNATPNDGYKSYRCRTVNKITGESQ  108 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp-sG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k  108 (129)
                      .+..|+++.|.|.+.+ +   .+.+.|++++..|..    +.|+.+.. ++.|.|.+++.+|+| .|+|.|.|.. |+. 
T Consensus       478 ~v~~g~~v~l~C~~~~-~---~~~i~W~~~g~~l~~----~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a~n~~-g~~-  546 (642)
T 1e07_A          478 PVEDKDAVAFTCEPEA-Q---NTTYLWWVNGQSLPV----SPRLQLSNGNRTLTLFNVTRNDAR-AYVCGIQNSV-SAN-  546 (642)
T ss_pred             eecCCCeEEEEEECCC-C---CcEEEEEECCEeCCC----CCcEEEcCCCcEEEEeecChhcCc-eEEEEeEcCC-CCc-
Confidence            6789999999999983 3   367899999987743    46887764 678999999999998 9999999998 542 


Q ss_pred             ecccceEEEEecC
Q psy5694         109 ASVFQTRLSITGK  121 (129)
Q Consensus       109 ~S~~~~~L~V~ep  121 (129)
                      .|. .+.|.|..+
T Consensus       547 ~s~-~~~l~V~~~  558 (642)
T 1e07_A          547 RSD-PVTLDVLYG  558 (642)
T ss_pred             cCC-CEEEEEEeC
Confidence            233 568888743

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=98.91  E-value=1.1e-09  Score=79.18  Aligned_cols=86  Identities=13%  Similarity=0.042  Sum_probs=53.9

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecc-eeeecccCCCceE--EEccCccEEEe---ccCCCCCCcceEEEeeccc
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKY--VVLSSGDLYVF---NATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-~~i~~~~~~~~ry--~vlpsG~L~I~---nv~~~D~g~~Y~C~a~N~l  103 (129)
                      .+..|+.+.|.|.+.++|+   +.++|.+++ ..+..    ..+.  ....+|.+.+.   .++.+|.| .|+|.|.|.+
T Consensus       127 ~~~~g~~v~L~C~~~g~P~---p~i~W~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~l~v~~~d~g-~Y~C~a~n~~  198 (222)
T 3sbw_C          127 VDPVTSEHELTCQAEGYPK---AEVIWTSSDHQVLSG----KTTTTNSKREEKLFNVTSTLRINTTTNE-IFYCTFRRLD  198 (222)
T ss_dssp             EETTTTEEEEEEEEEEBSC---CEEEEEETTCCEECC----EEEEEECC----CEEEEEEEEEECCTTC-EEEEEEEETT
T ss_pred             eecCCCcEEEEEEecCCCC---CeEEEEECCCceecC----ccceEEEcCCCCCEEEEEEEEEeccCCc-EEEEEEEeCc
Confidence            4568999999999977663   679999984 55532    1222  22345555544   56788987 9999999998


Q ss_pred             CCeEEecccceEEEEecCCCCCCC
Q psy5694         104 TGESQASVFQTRLSITGKLKSLCT  127 (129)
Q Consensus       104 tge~k~S~~~~~L~V~ep~~~~~~  127 (129)
                      +.. ..   .+.|.|.++.-..|+
T Consensus       199 g~~-~~---~~~l~v~~~p~~~~p  218 (222)
T 3sbw_C          199 PEE-NH---TAELVIPELPLAHPP  218 (222)
T ss_dssp             TTE-EE---EEEEECCCC------
T ss_pred             cce-ee---EEEEEecCCcccCCC
Confidence            433 22   458888866655554

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=98.91  E-value=1.9e-09  Score=80.86  Aligned_cols=92  Identities=12%  Similarity=0.132  Sum_probs=61.4

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccC---CCceEEEccCccEEEeccCCCCCCcceEE
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTD---TGGKYVVLSSGDLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~---~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C   97 (129)
                      +...+.+. .+..|.++.|.|.+.+.++.  ..+.|.+++..+.....   ..+++.  .++.|.|.+++.+|+| .|+|
T Consensus       189 i~~~~~~~-~~~~g~~v~l~C~~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~~L~i~~v~~~d~G-~Y~C  262 (292)
T 4dkd_C          189 LTLVPAEL-VRIRGEAAQIVCSASSVDVN--FDVFLQHNNTKLAIPQQSDFHNNRYQ--KVLTLNLDQVDFQHAG-NYSC  262 (292)
T ss_dssp             EEEESSCB-CCCSSSCEEEEEEEEESSSC--CEEECCBSSCCCCCCBEEEEETTEEE--EEEEEEESSCCTTSCE-EEEE
T ss_pred             EEccCCce-eEecCCCEEEEEEecCCCCc--eEEEEeCCCcccccCccceeccceee--eEEEEEECccChhcCe-EEEE
Confidence            44455555 66799999999999765542  46889998865532100   122332  3568999999999997 9999


Q ss_pred             EeecccCCeEEecccceEEEEecCC
Q psy5694          98 RTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        98 ~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      .|.|.+ |...  . .+.|.|....
T Consensus       263 ~a~N~~-g~~~--~-~~~l~V~~~~  283 (292)
T 4dkd_C          263 VASNVQ-GKHS--T-SMFFRVVESA  283 (292)
T ss_dssp             EEECSS-CEEE--E-EEEECC----
T ss_pred             EEecCC-CCce--e-EEEEEEeeCC
Confidence            999998 6633  3 4477777554

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=98.91  E-value=2.2e-09  Score=80.97  Aligned_cols=95  Identities=17%  Similarity=0.228  Sum_probs=66.2

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eeeecc--------cCCCceEEEcc----CccEEE
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYLN--------TDTGGKYVVLS----SGDLYV   83 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i~~~--------~~~~~ry~vlp----sG~L~I   83 (129)
                      +...+.+. .+.+|++|.|.|.+.+.    .+.+.|+++.     ..+...        ....+||.+..    ++.|.|
T Consensus       140 v~~~p~~~-~v~~G~~v~L~C~~~~~----~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I  214 (256)
T 3tf7_C          140 VTQSPRNK-VTVTGENVTLSCRQTNS----HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTL  214 (256)
T ss_dssp             EEESCSEE-EEETTCCEEECEEECSC----CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEE
T ss_pred             EEecCCEE-EEeCCCcEEEEEEcCCC----ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEE
Confidence            33444555 77899999999999754    2468998842     111100        01235666643    447999


Q ss_pred             eccCCCCCCcceEEEeecccCCeEEecccceEEEEecCCC
Q psy5694          84 FNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGKLK  123 (129)
Q Consensus        84 ~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~~  123 (129)
                      .+++.+|+| .|.|.|.|.. |+..-.. ..+|+|+++..
T Consensus       215 ~~v~~~DsG-~Y~C~a~n~~-g~~~fG~-gt~l~v~~~~~  251 (256)
T 3tf7_C          215 ESASPSQTS-LYFCASSDAP-GQLYFGE-GSKLTVLELEH  251 (256)
T ss_dssp             SSCCGGGCE-EEEEEEEEET-TEEEECC-CEEEEEECGGG
T ss_pred             CCCCHHHCE-EEEEEecCCC-CccEECC-CeEEEEEcccc
Confidence            999999997 9999999986 7765555 77999987654

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=98.91  E-value=4.4e-09  Score=77.98  Aligned_cols=94  Identities=12%  Similarity=0.148  Sum_probs=63.1

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCc-eeEeEEeecc--ee---e-ecc--------cCCCceEEEcc-----CccEEE
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEY-IIVTSWIQDD--VN---I-YLN--------TDTGGKYVVLS-----SGDLYV   83 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~-v~v~sW~~d~--~~---i-~~~--------~~~~~ry~vlp-----sG~L~I   83 (129)
                      +++.. .|.+|.+|.|.|.+.+.+... .+.+.|++++  ..   | ...        ....+||.+..     ++.|.|
T Consensus         6 qp~~~-~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   84 (228)
T 3bae_H            6 ESGPG-LLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKI   84 (228)
T ss_dssp             EECCS-EECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEE
T ss_pred             CCCce-eecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEE
Confidence            35555 899999999999997654211 1568998853  11   1 110        01247888863     368999


Q ss_pred             eccCCCCCCcceEEEeecccCC-----eE-EecccceEEEEec
Q psy5694          84 FNATPNDGYKSYRCRTVNKITG-----ES-QASVFQTRLSITG  120 (129)
Q Consensus        84 ~nv~~~D~g~~Y~C~a~N~ltg-----e~-k~S~~~~~L~V~e  120 (129)
                      +|++.+|+| .|.|.+.|..++     .. ..+. .+.|.|.+
T Consensus        85 ~~v~~~D~G-~Y~C~~~~~~g~~~~~~~~~~~~~-~~~L~V~~  125 (228)
T 3bae_H           85 TSVDTADTA-TYYCARRGFYGRKYEVNHFDYWGQ-GTTLTVSS  125 (228)
T ss_dssp             CSCCGGGCE-EEEEEEEEESTTCTTSEEEEEECC-CEEEEECS
T ss_pred             cCCCcccCE-EEEEEEecCCCccccccceeeeCC-cEEEEecC
Confidence            999999997 999999987521     21 1222 46888874

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=98.91  E-value=3.3e-09  Score=91.30  Aligned_cols=89  Identities=21%  Similarity=0.365  Sum_probs=68.6

Q ss_pred             EeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccC-CCCCCcceEEEeec
Q psy5694          23 INVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNAT-PNDGYKSYRCRTVN  101 (129)
Q Consensus        23 ~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~-~~D~g~~Y~C~a~N  101 (129)
                      ....+. .+..|+++.|.|.+.+.|   .+.+.|.+|+..+.    .+.++.+.++|.|.|.+++ .+|+| .|+|.|.|
T Consensus       531 ~~~~~~-~v~~G~~v~l~C~~~g~p---~~~i~W~k~~~~l~----~~~~~~~~~~~~l~i~~v~~~~d~G-~Y~C~a~n  601 (816)
T 3dmk_A          531 RQMEKK-AIVAGETLIVTCPVAGYP---IDSIVWERDNRALP----INRKQKVFPNGTLIIENVERNSDQA-TYTCVAKN  601 (816)
T ss_dssp             CCCCCE-EEETTCCEEEECCEECSS---EEEEEEEETTEESC----CSTTEEECTTSEEEESSCCHHHHCE-EEEEEEEE
T ss_pred             EccCCe-EEecCCeEEEEEEecCCC---CCEEEEEECCeEcc----cCCceEEecCCeEEEEecCccccCE-EEEEEEEE
Confidence            334455 788999999999998766   46799999997774    3578888999999999998 58997 99999999


Q ss_pred             ccCCeEEecccceEEEEecCCC
Q psy5694         102 KITGESQASVFQTRLSITGKLK  123 (129)
Q Consensus       102 ~ltge~k~S~~~~~L~V~ep~~  123 (129)
                      .. |.. .+. ...|.|..+..
T Consensus       602 ~~-g~~-~~~-~~~v~v~~~p~  620 (816)
T 3dmk_A          602 QE-GYS-ARG-SLEVQVMVLPR  620 (816)
T ss_dssp             SS-SCE-EEE-EEEEEEECCCC
T ss_pred             CC-Cce-eee-eEEEEEecCCc
Confidence            97 542 222 44666665543

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=98.90  E-value=1.2e-08  Score=76.73  Aligned_cols=90  Identities=20%  Similarity=0.266  Sum_probs=60.5

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-eccc-------CCCc-eEEEccCcc--EEEeccCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLNT-------DTGG-KYVVLSSGD--LYVFNATP   88 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~~-------~~~~-ry~vlpsG~--L~I~nv~~   88 (129)
                      +... .|..|++|+|.|.+++.+.   +.+.|++..     ..| ....       ...+ ||.+..++.  |.|+||+.
T Consensus         8 p~~v-~v~~G~~v~L~C~~~~~~~---~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~   83 (253)
T 3to4_D            8 PRWR-LVPRGQAVNLRCILKNSQY---PWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANM   83 (253)
T ss_dssp             CSEE-EEESSCCEEEEEECSCTTC---CCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESC
T ss_pred             CCeE-EEeCCCcEEEEEEeCCCCc---ceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCCh
Confidence            3444 8899999999999876653   468998832     111 1110       0112 888876655  99999999


Q ss_pred             CCCCcceEEEeecccCC---eEEecccceEEEEec
Q psy5694          89 NDGYKSYRCRTVNKITG---ESQASVFQTRLSITG  120 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~ltg---e~k~S~~~~~L~V~e  120 (129)
                      +|+| .|.|.+.+..+|   ....+. ...|.|.+
T Consensus        84 ~DsG-~Y~C~~~~~~~~~~~~~~~~~-~t~l~V~~  116 (253)
T 3to4_D           84 SQGR-TLYCTSSADHWTNTGQLYFGE-GSKLTVLE  116 (253)
T ss_dssp             SSCE-EEEEEEECSCCSTTCCEEECC-CEEEEEES
T ss_pred             hhCe-EEEEEEecCCCCcccceEECC-CEEEEEec
Confidence            9997 999999976432   222333 55777764

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=98.90  E-value=8.9e-09  Score=70.93  Aligned_cols=89  Identities=16%  Similarity=0.285  Sum_probs=61.4

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc----cCCCceEEEcc---CccEEEeccCCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN----TDTGGKYVVLS---SGDLYVFNATPNDG   91 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~----~~~~~ry~vlp---sG~L~I~nv~~~D~   91 (129)
                      +.+. .|.+|.+|.|.|.+.+.+.   +.+.|++..     ..| ...    ....+||.+..   +..|.|.|++.+|+
T Consensus        10 p~~v-~v~~G~~vtL~C~~~~~~~---~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~Ds   85 (119)
T 2e27_L           10 PSSL-SASLGGKVTITCKANQDIK---KKIAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGSGSGRDYSFSISNLEPEDA   85 (119)
T ss_dssp             CSEE-EEETTCCEEEEEEESSCCT---TCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             CCeE-EEeCCCCEEEEEEeCCCCC---ceEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEccCCEEEEEECCCChHHC
Confidence            4445 8999999999999976652   458998853     122 211    01257888754   34699999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEecC
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      | .|.|.+.|..  ...-.. ..+|.|.+.
T Consensus        86 G-~Y~C~~~~~~--~~~fg~-GT~l~v~~~  111 (119)
T 2e27_L           86 A-TYYCLQYDNF--TWTFGG-GTKLEIKRA  111 (119)
T ss_dssp             E-EEEEEECGGG--CCEECC-CEEEEEEC-
T ss_pred             E-EEEEEEccCC--ceEECC-CEEEEEeCC
Confidence            7 9999999862  323333 568888754

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=98.90  E-value=2.1e-09  Score=77.97  Aligned_cols=83  Identities=19%  Similarity=0.296  Sum_probs=54.2

Q ss_pred             EEEeCCeEEEEeeC-CCCCCCceeEeEEeecc-eeeecccCCCceEEEccCcc---EEEeccCCCCCCcceEEEeecccC
Q psy5694          30 NVILGNTAVLRCQI-PSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYVVLSSGD---LYVFNATPNDGYKSYRCRTVNKIT  104 (129)
Q Consensus        30 ~V~~GntAvL~C~v-p~~~~~~v~v~sW~~d~-~~i~~~~~~~~ry~vlpsG~---L~I~nv~~~D~g~~Y~C~a~N~lt  104 (129)
                      .+..|+++.|.|.+ .+.|.   +.+.|.+++ ..+...  .........+|.   |.|.+++.+|.| .|+|.|.|..+
T Consensus       121 ~v~~G~~~~l~C~~~~g~P~---~~v~W~~~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~v~~~d~G-~Y~C~a~n~~g  194 (222)
T 4i0k_A          121 DLRPGNMVTITCSSYQGYPE---AEVFWKDGQGVPLTGN--VTTSQMANERGLFDVHSVLRVVLGANG-TYSCLVRNPVL  194 (222)
T ss_dssp             ---CCSEEEEEEEEEEEBSC---CEEEEECTTSCBCCSE--EEEEEEECTTSCEEEEEEEEEECCTTC-EEEEEEEETTT
T ss_pred             eecCCceEEEEEecccccCC---CeEEEEcCCCccCCCC--cceeEEcCCCCeEEEEEEEEEEeCCCC-EEEEEEECCCC
Confidence            56789999999999 44453   578999954 554211  011122234555   899999999998 99999999984


Q ss_pred             CeEEecccceEEEEecCC
Q psy5694         105 GESQASVFQTRLSITGKL  122 (129)
Q Consensus       105 ge~k~S~~~~~L~V~ep~  122 (129)
                      .. ..   .+.|.|.++.
T Consensus       195 ~~-~~---~~~l~V~~~p  208 (222)
T 4i0k_A          195 QQ-DA---HGSVTITGQP  208 (222)
T ss_dssp             TE-EE---EEEEECCC--
T ss_pred             CC-ce---EEEEEEeCCc
Confidence            43 22   4578887654

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=98.89  E-value=1.1e-09  Score=82.33  Aligned_cols=73  Identities=15%  Similarity=0.126  Sum_probs=57.1

Q ss_pred             eeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCC
Q psy5694          26 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITG  105 (129)
Q Consensus        26 ~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltg  105 (129)
                      .+. .+.+|+++.|.|.+.+.|+   +.+.|++++.            .++++|.|.+  ++.+|+| .|+|.|.|.. |
T Consensus       193 ~~~-~v~~g~~~~l~C~~~g~P~---p~i~W~~~~~------------~~~~~g~~~~--v~~~d~G-~Y~C~a~N~~-G  252 (265)
T 2oz4_A          193 GNW-TWPENSQQTPMCQAWGNPL---PELKCLKDGT------------FPLPIGESVT--VTRDLEG-TYLCRARSTQ-G  252 (265)
T ss_dssp             SEE-EEETTCEECCCCCCEEESC---CEEEEEETTT------------EECCTTSCEE--CCGGGCE-EEEEEEEETT-E
T ss_pred             Ccc-EEcCCCeEEEEeECccCCC---CeEEEEECCc------------ccCCCCcEEE--eehhhCe-EEEEEEECCC-C
Confidence            345 7899999999999977764   6789999873            3556787764  8999997 9999999988 6


Q ss_pred             eEEecccceEEEEecC
Q psy5694         106 ESQASVFQTRLSITGK  121 (129)
Q Consensus       106 e~k~S~~~~~L~V~ep  121 (129)
                      +.  +. .+.|.|..|
T Consensus       253 ~~--~~-~~~l~V~~p  265 (265)
T 2oz4_A          253 EV--TR-EVTVNVLSP  265 (265)
T ss_dssp             EE--EE-EEEEEEECC
T ss_pred             cE--EE-EEEEEEecC
Confidence            64  33 558888754

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=98.89  E-value=7.3e-09  Score=69.56  Aligned_cols=88  Identities=16%  Similarity=0.283  Sum_probs=60.1

Q ss_pred             eeeeeEEEeCCeEEEEee-CCCCCCCceeEeEEeecce---ee-ecc----cCCCceEEEc--cC---ccEEEeccCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQ-IPSYMSEYIIVTSWIQDDV---NI-YLN----TDTGGKYVVL--SS---GDLYVFNATPND   90 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~-vp~~~~~~v~v~sW~~d~~---~i-~~~----~~~~~ry~vl--ps---G~L~I~nv~~~D   90 (129)
                      +... .|.+|.+|.|.|. +...+.  ...+.|++...   .| +..    ....+||.+.  ++   ..|.|+|++.+|
T Consensus         7 p~~~-~v~~G~~v~L~C~v~~~~~~--~~~v~W~r~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   83 (109)
T 1pew_A            7 PHSV-SESPGKTVTISCTRSSGNIA--SNYVQWYQQRSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTED   83 (109)
T ss_dssp             CSEE-EECTTSCEEEEEEESSSCGG--GSCCEEEEC-CCCEEEEBTTTBCCTTCCTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             CCCE-EEcCCCCEEEEEEeCCCCCC--CccEEEEEECCCCcEEEEecCCcCCCCCCcEEEEeccCCCEEEEEECCCChhh
Confidence            4445 8899999999999 765442  24689988651   12 111    0124788876  32   369999999999


Q ss_pred             CCcceEEEeecccCCeEEecccceEEEEe
Q psy5694          91 GYKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        91 ~g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      +| .|.|.+.|.  +...-.. ..+|.|.
T Consensus        84 sG-~Y~C~~~~~--~~~~fg~-GT~l~V~  108 (109)
T 1pew_A           84 EA-DYYCQSYDA--RNVVFGG-GTRLTVL  108 (109)
T ss_dssp             CE-EEEEEEEET--TEEEECC-CEEEEEC
T ss_pred             CE-EEEEEEEeC--CceEECC-CEEEEEe
Confidence            97 999999985  3433343 6678775

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=98.89  E-value=5.9e-09  Score=79.03  Aligned_cols=95  Identities=15%  Similarity=0.113  Sum_probs=64.2

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCc--eeEeEEee--cceee----ecc----cCCCceEEEcc---CccEEEeccCC
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEY--IIVTSWIQ--DDVNI----YLN----TDTGGKYVVLS---SGDLYVFNATP   88 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~--v~v~sW~~--d~~~i----~~~----~~~~~ry~vlp---sG~L~I~nv~~   88 (129)
                      .+... .+.+|.++.|.|.+.+.++.-  .+.+.|++  ++..+    ...    ....+||.+..   .+.|.|.+++.
T Consensus       127 ~p~~~-~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  205 (256)
T 1nqb_A          127 TPLSL-PVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEA  205 (256)
T ss_dssp             ECSEE-EECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             cCcEE-EEecCCcEEEEeEecCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCCh
Confidence            34455 789999999999998766420  03689999  44322    100    11246887653   45799999999


Q ss_pred             CCCCcceEEEeecccCCeEEecccceEEEEecCCC
Q psy5694          89 NDGYKSYRCRTVNKITGESQASVFQTRLSITGKLK  123 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~~  123 (129)
                      +|+| .|.|.|.|.  +....+. ..+|.|.++..
T Consensus       206 ~DsG-~Y~C~a~~~--~~~~fg~-gt~l~V~~~~~  236 (256)
T 1nqb_A          206 EDLG-VYYCFQGSH--VPYTFGG-GTKLEIKRAAA  236 (256)
T ss_dssp             GGCE-EEEEEECSS--SSCEECC-CEEEEECC---
T ss_pred             HHCE-EEEEEEccC--CceEECC-CEEEEEECCCC
Confidence            9997 999999985  3434455 67899986543

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=98.88  E-value=2.9e-09  Score=82.35  Aligned_cols=98  Identities=19%  Similarity=0.267  Sum_probs=65.8

Q ss_pred             eeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e---ee-ec---------ccCCCceEEEcc-----C
Q psy5694          19 QKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NI-YL---------NTDTGGKYVVLS-----S   78 (129)
Q Consensus        19 q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~---~i-~~---------~~~~~~ry~vlp-----s   78 (129)
                      +....++... .|.+|++|.|.|.+.+.+.. .+.+.|++++  .   .| ..         .....+||.+..     +
T Consensus        23 ~~~v~~p~~~-~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~  100 (291)
T 2gki_A           23 EVQLQQSGPE-LVKPGASVKMSCKASGYTFT-SYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSST  100 (291)
T ss_dssp             CCEEEECCCE-EECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTE
T ss_pred             cEEEEcCCcE-EecCCCCEEEEEeccCCccc-ccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCE
Confidence            4444556656 89999999999998765421 2468999853  1   11 10         011246887653     3


Q ss_pred             ccEEEeccCCCCCCcceEEEeecccCC--eEEecccceEEEEec
Q psy5694          79 GDLYVFNATPNDGYKSYRCRTVNKITG--ESQASVFQTRLSITG  120 (129)
Q Consensus        79 G~L~I~nv~~~D~g~~Y~C~a~N~ltg--e~k~S~~~~~L~V~e  120 (129)
                      +.|.|.+++.+|+| .|.|.+.|...|  ....+. ..+|.|.+
T Consensus       101 ~sL~I~~v~~~DsG-~Y~C~~~~~~~g~~~~~~~~-~~~L~V~~  142 (291)
T 2gki_A          101 AYMELSSLTSEDSA-VYYCARGAYKRGYAMDYWGQ-GTSVTVSS  142 (291)
T ss_dssp             EEEEECSCCGGGCE-EEEEEEECGGGTTCEEEECC-CEEEEECC
T ss_pred             EEEEECcCCHHHCE-EEEEEEeccccccccceeCC-CcEEEEec
Confidence            57999999999997 999999997523  222233 55888887

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=98.88  E-value=6e-09  Score=78.74  Aligned_cols=90  Identities=18%  Similarity=0.176  Sum_probs=58.5

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e---eeecccC---------CCceEEEcc----CccEEEec
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NIYLNTD---------TGGKYVVLS----SGDLYVFN   85 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~---~i~~~~~---------~~~ry~vlp----sG~L~I~n   85 (129)
                      .++.. .|.+|++|+|.|.+.. +   .+.+.|++..  .   .|.....         .++||.+..    ++.|.|+|
T Consensus        33 ~p~~v-~v~~G~~v~L~C~~~~-~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~  107 (270)
T 3qib_D           33 TPRYL-VKGQGQKAKMRCIPEK-G---HPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQS  107 (270)
T ss_dssp             ECSEE-EEETTSCEEEEEECCT-T---CCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESS
T ss_pred             CCCeE-EEcCCCCEEEEEEecC-C---CceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECC
Confidence            34445 8999999999999854 2   2578998832  1   1111000         011887764    55799999


Q ss_pred             cCCCCCCcceEEEeecccCC-eEEecccceEEEEec
Q psy5694          86 ATPNDGYKSYRCRTVNKITG-ESQASVFQTRLSITG  120 (129)
Q Consensus        86 v~~~D~g~~Y~C~a~N~ltg-e~k~S~~~~~L~V~e  120 (129)
                      |+.+|+| .|.|.+.|...+ ....+. ...|.|.+
T Consensus       108 v~~~D~G-~Y~C~~~~~~~~~~~~~~~-~~~l~V~~  141 (270)
T 3qib_D          108 SEAGDSA-LYLCASSLNWSQDTQYFGP-GTRLLVLE  141 (270)
T ss_dssp             CCGGGCE-EEEEEEESCTTCCCCEECC-CEEEEEES
T ss_pred             CCHhHCe-EEEEEEecCCCccceEECC-cEEEEEcc
Confidence            9999997 999999974311 112233 45777775

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=98.88  E-value=1.8e-09  Score=82.99  Aligned_cols=84  Identities=17%  Similarity=0.107  Sum_probs=56.8

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEE-EccCccEEEeccCCCCCCcceEEEeecccCCe--
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYV-VLSSGDLYVFNATPNDGYKSYRCRTVNKITGE--  106 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~-vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge--  106 (129)
                      .|.+|+++.|.|.++..+    +.+.|.+++..+.+. ....+.. ...++.|.|.+|+.+|+| .|+|.|.|..+..  
T Consensus       129 ~v~~G~~v~L~C~~~~~~----~~~~w~k~g~~~~~~-~~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~a~n~~g~~~~  202 (316)
T 3vh8_G          129 LVKSGERVILQCWSDIMF----EHFFLHKEGISKDPS-RLVGQIHDGVSKANFSIGPMMLALAG-TYRCYGSVTHTPYQL  202 (316)
T ss_dssp             EEETTCCEEEEEEESSCC----SEEEEEETTCCSCCE-EEECEEETTEEEEEEEECSCCGGGCE-EEEEEEECTTCTTBC
T ss_pred             ccCCCCeEEEEEcCCCCC----cEEEEEECCCccccc-eeeeeecCCCceEEEEECCCChhhCc-eEEEEEecCCCCccc
Confidence            478999999999996433    357899998555321 0011111 124678999999999997 9999999987421  


Q ss_pred             EEecccceEEEEec
Q psy5694         107 SQASVFQTRLSITG  120 (129)
Q Consensus       107 ~k~S~~~~~L~V~e  120 (129)
                      ...|. ...|.|++
T Consensus       203 s~~s~-~~~l~V~~  215 (316)
T 3vh8_G          203 SAPSD-PLDIVVTG  215 (316)
T ss_dssp             CCCCC-CEEEEEEC
T ss_pred             cCCCC-CEEEEecC
Confidence            11233 56777764

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=98.87  E-value=6.6e-09  Score=76.18  Aligned_cols=91  Identities=13%  Similarity=0.202  Sum_probs=59.7

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e---ee-ecc-----------cCCCceEEEccCc-----cEE
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NI-YLN-----------TDTGGKYVVLSSG-----DLY   82 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~---~i-~~~-----------~~~~~ry~vlpsG-----~L~   82 (129)
                      +... .|.+|++|.|.|.+.+...+ ...+.|++..  .   .| .-.           ....+||.+..++     .|.
T Consensus         7 p~~~-~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   84 (221)
T 3m8o_H            7 SGGG-LVQPGGSLKLSCAASGFTLS-GSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQ   84 (221)
T ss_dssp             ESCE-EECTTCCEEEEEEEESSCGG-GSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEE
T ss_pred             cCCE-EEcCCCCEEEEEEccccccc-ccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEE
Confidence            4444 78999999999998754322 2578998743  1   11 100           0124789887554     399


Q ss_pred             EeccCCCCCCcceEEEeecccCCeEEecccceEEEEec
Q psy5694          83 VFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        83 I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      |+||+.+|+| .|.|.+.|...+. ..+. ...|.|..
T Consensus        85 I~~v~~~DsG-~Y~C~~~~~~~~~-~~~~-~~~l~V~~  119 (221)
T 3m8o_H           85 MNSLKSDDTA-MYYCVIRGDVYNR-QWGQ-GTLVTVSS  119 (221)
T ss_dssp             ECSCCGGGCE-EEEEEEESCTTCC-CBBC-CEEEEECS
T ss_pred             ECCCCHHHCE-EEEEEEECCChhh-eECC-CEEEEEec
Confidence            9999999997 9999999863111 1222 44677763

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=98.86  E-value=5.7e-09  Score=78.31  Aligned_cols=92  Identities=17%  Similarity=0.254  Sum_probs=61.7

Q ss_pred             eeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e---ee-ec---------ccCCCceEEEccCcc-----EEEec
Q psy5694          26 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NI-YL---------NTDTGGKYVVLSSGD-----LYVFN   85 (129)
Q Consensus        26 ~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~---~i-~~---------~~~~~~ry~vlpsG~-----L~I~n   85 (129)
                      ... .|.+|++|.|.|.+.+.+.. .+.+.|++..  .   .| ..         .....+||.+..++.     |.|.+
T Consensus        10 ~~~-~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   87 (256)
T 3umt_A           10 GLE-LVKPGASVKISCKTSGYTFT-EYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRS   87 (256)
T ss_dssp             CCE-EECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             Cce-EEcCCCCEEEEEEEeccccc-ccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECC
Confidence            344 78899999999998765422 2568998732  1   11 00         012357898876544     99999


Q ss_pred             cCCCCCCcceEEEeecccC-CeEEecccceEEEEecC
Q psy5694          86 ATPNDGYKSYRCRTVNKIT-GESQASVFQTRLSITGK  121 (129)
Q Consensus        86 v~~~D~g~~Y~C~a~N~lt-ge~k~S~~~~~L~V~ep  121 (129)
                      ++.+|+| .|.|.+.|... +....+. ...|.|.+.
T Consensus        88 v~~~DsG-~Y~C~~~~~~~~~~~~~~~-~~~L~V~~~  122 (256)
T 3umt_A           88 LTSEDSA-VYYCARDDRYPAWFAYWGQ-GTTVTVSSG  122 (256)
T ss_dssp             CCGGGCE-EEEEEECCSTTCCSCEECC-CEEEEECC-
T ss_pred             CCcccCE-EEEEEEccCCCccccEECC-CEEEEEcCC
Confidence            9999997 99999998732 1222333 568888863

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=98.86  E-value=3.2e-09  Score=81.30  Aligned_cols=91  Identities=16%  Similarity=0.250  Sum_probs=58.3

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCC--CceeEeEEeecceee----e-c----ccCCCceEEEc--------cCccEEEec
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMS--EYIIVTSWIQDDVNI----Y-L----NTDTGGKYVVL--------SSGDLYVFN   85 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~--~~v~v~sW~~d~~~i----~-~----~~~~~~ry~vl--------psG~L~I~n   85 (129)
                      |.+. .+..|++|.|.|.+.+.+.  ..+..++|+|++...    . +    ......|+...        .++.|.|.|
T Consensus         7 P~~v-~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~   85 (313)
T 4fqp_A            7 PTQV-PGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFG   85 (313)
T ss_dssp             CSEE-CCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECS
T ss_pred             CCEE-EEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECc
Confidence            4444 7889999999999854432  234468999987321    1 0    01223455542        346799999


Q ss_pred             cCCCCCCcceEEEeecccCCeEEecccceEEEEec
Q psy5694          86 ATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        86 v~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      ++.+|+| .|+|++.+...|..  +. .+.|.+..
T Consensus        86 v~~~D~G-~Y~C~v~~~~~~~~--~~-~~~l~v~~  116 (313)
T 4fqp_A           86 LRVEDEG-NYTCLFVTFPQGSR--SV-DIWLRVLA  116 (313)
T ss_dssp             CCGGGCE-EEEEEEECSSSCEE--EE-EEEECCBB
T ss_pred             CChhhCE-EEEEEEeeccCcce--ee-eeeeeecc
Confidence            9999997 99999876544543  22 33555443

>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...

Probab=98.86  E-value=1.8e-08  Score=68.08  Aligned_cols=90  Identities=19%  Similarity=0.271  Sum_probs=61.2

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCC---CceeEeEEeecc-----eee-ecc----cCCCceEEEccCc---cEEEeccCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMS---EYIIVTSWIQDD-----VNI-YLN----TDTGGKYVVLSSG---DLYVFNATP   88 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~---~~v~v~sW~~d~-----~~i-~~~----~~~~~ry~vlpsG---~L~I~nv~~   88 (129)
                      +... .|.+|.+|.|.|.+.+.+.   .-.+.+.|++..     ..| ...    ....+||.+..++   .|.|.|++.
T Consensus         8 p~~v-~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   86 (114)
T 1eeq_A            8 PDSL-AVSLGERATINCKSSQSVLDSSNSKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQA   86 (114)
T ss_dssp             CSEE-EECTTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             CCeE-EEcCCCeEEEEEEcCCCccccccCCccEEEEEECCCCCCEEEEEecCccCCCCCCCEEEeecCCEEEEEECCCCc
Confidence            4445 8899999999999876542   012568998853     122 211    1125788876433   699999999


Q ss_pred             CCCCcceEEEeecccCCeEEecccceEEEEe
Q psy5694          89 NDGYKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      +|+| .|.|.+.|.  +...-.+ ..+|.|+
T Consensus        87 ~DsG-~Y~C~~~~~--~~~~fg~-GT~l~V~  113 (114)
T 1eeq_A           87 EDVA-VYYCQQYYS--HPYSFGQ-GTKLEIK  113 (114)
T ss_dssp             GGCE-EEEEEECSS--SSCEECC-CEEEEEC
T ss_pred             ccCE-EEEEEEeeC--CeEEECC-CEEEEEe
Confidence            9997 999999986  3333333 6688774

>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*

Probab=98.37  E-value=2.7e-10  Score=76.99  Aligned_cols=74  Identities=19%  Similarity=0.334  Sum_probs=53.7

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--ee---e-ecc----cCCCceEEEcc-----CccEEEeccCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VN---I-YLN----TDTGGKYVVLS-----SGDLYVFNATPN   89 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~~---i-~~~----~~~~~ry~vlp-----sG~L~I~nv~~~   89 (129)
                      +.+. .|.+|.+|.|.|.+.+.+   .+.+.|.+.+  ..   | ...    ...++||.+..     ++.|.|.|++.+
T Consensus         6 p~~v-~v~~G~~v~L~C~~~~~~---~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   81 (110)
T 1u3h_A            6 PQSL-TVWEGETAILNCSYENSA---FDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPG   81 (110)
Confidence            4455 899999999999986543   2568998864  11   1 100    12357888753     357999999999


Q ss_pred             CCCcceEEEeeccc
Q psy5694          90 DGYKSYRCRTVNKI  103 (129)
Q Consensus        90 D~g~~Y~C~a~N~l  103 (129)
                      |+| .|.|.+.|..
T Consensus        82 DsG-~Y~C~~~~~~   94 (110)
T 1u3h_A           82 DSA-TYFCAASANS   94 (110)
Confidence            998 9999999863

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.85  E-value=6.8e-09  Score=79.59  Aligned_cols=90  Identities=14%  Similarity=0.230  Sum_probs=62.3

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEee--cceee----ecc----cCCCceEEEcc---CccEEEeccCCCC
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQ--DDVNI----YLN----TDTGGKYVVLS---SGDLYVFNATPND   90 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~--d~~~i----~~~----~~~~~ry~vlp---sG~L~I~nv~~~D   90 (129)
                      .+.+. .+.+|+++.|.|.+.+.+    +.+.|++  ++..+    ...    ....+||.+..   ++.|.|.+++.+|
T Consensus       168 ~p~~~-~v~~G~~v~L~C~~~~~~----~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D  242 (282)
T 1qok_A          168 SPAIM-SASPGEKVTITCSASSSV----SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAED  242 (282)
T ss_dssp             ECSEE-EECTTCCEEEEEEESSCC----SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CCCEE-EEcCCCcEEEEEEecCCC----ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhH
Confidence            34455 789999999999997766    4689999  44322    110    01247887653   4469999999999


Q ss_pred             CCcceEEEeecccCCeEEecccceEEEEecCC
Q psy5694          91 GYKSYRCRTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        91 ~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      +| .|.|.|.|.  +....++ ..+|.|+++.
T Consensus       243 sG-~Y~C~a~~~--~~~~fg~-gt~l~V~~~~  270 (282)
T 1qok_A          243 AA-TYYCQQRSS--YPLTFGA-GTKLELKRAA  270 (282)
T ss_dssp             CE-EEEEEECSS--SSCEECC-CEEEEEC---
T ss_pred             CE-EEEEEEeeC--CCceEeC-CEEEEEeccc
Confidence            97 999999985  3334454 6789998543

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=98.85  E-value=6.3e-09  Score=69.95  Aligned_cols=89  Identities=19%  Similarity=0.245  Sum_probs=59.3

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCC-CceeEeEEeecc-----eee-ecc----cCCCceEEEccCc---cEEEeccCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMS-EYIIVTSWIQDD-----VNI-YLN----TDTGGKYVVLSSG---DLYVFNATPND   90 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~-~~v~v~sW~~d~-----~~i-~~~----~~~~~ry~vlpsG---~L~I~nv~~~D   90 (129)
                      +... .|.+|.+|.|.|.+.+.+. .-.+.+.|.+..     ..| ...    ....+||.+..++   .|.|.|++.+|
T Consensus         8 p~~~-~~~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~D   86 (111)
T 1j05_L            8 PASL-AVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADD   86 (111)
T ss_dssp             CSEE-ECCTTSCEEEEEEESSCCEETTEECEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CCEE-EEeCCCCEEEEeecCCCcccCCCceEEEEEeCCCCCCEEEEEecCcCCCCCCCcEEEEccCCEEEEEECCCCccc
Confidence            4444 8889999999999876541 013568998853     112 211    1125788876433   69999999999


Q ss_pred             CCcceEEEeecccCCeEEecccceEEEE
Q psy5694          91 GYKSYRCRTVNKITGESQASVFQTRLSI  118 (129)
Q Consensus        91 ~g~~Y~C~a~N~ltge~k~S~~~~~L~V  118 (129)
                      +| .|.|.+.|.  +...-.+ ..+|.|
T Consensus        87 sG-~Y~C~~~~~--~~~~fg~-gT~l~V  110 (111)
T 1j05_L           87 VA-TYYCQQTNE--DPYTFGG-GTKLEI  110 (111)
T ss_dssp             CE-EEEEEECSS--SSCEECC-CEEEEC
T ss_pred             CE-EEEEEEecC--CCCEECC-CEEEEE
Confidence            97 999999985  3323333 556665

>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B, IG-beta, BCR, immunoglobulin domain, protein binding; 3.20A {Homo sapiens}

Probab=98.85  E-value=3.1e-08  Score=70.61  Aligned_cols=100  Identities=18%  Similarity=0.122  Sum_probs=67.1

Q ss_pred             eEEeeeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeec---ceeeecccCCCceEEEccCc---cEEEeccCC
Q psy5694          15 PVVKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD---DVNIYLNTDTGGKYVVLSSG---DLYVFNATP   88 (129)
Q Consensus        15 AVv~q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d---~~~i~~~~~~~~ry~vlpsG---~L~I~nv~~   88 (129)
                      +...+.....+... .|.+|++|.|.|.+.+..    ..+.|++.   +..+..-....+||.+..++   .|.|.+++.
T Consensus        15 g~~~~~v~Q~p~~~-~v~~G~svtL~C~~s~~~----~~v~Wyrq~~~g~~~~~l~~~~~rf~~~~~~~~~~L~I~~~~~   89 (134)
T 3kg5_A           15 GSACSRIWQSPRFI-ARKRGFTVKMHCYMNSAS----GNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRF   89 (134)
T ss_dssp             ---CCCCEEECSEE-EEETTCCEEEEEECCCTT----CCCEEEEESSSSSCCEECCCCTTTEEEEECSSEEEEEECSCCT
T ss_pred             ccccCEEEEeCCEE-EEeCCCCEEEEEEECCCC----ceEEEEEECCCCCCcEEEEEECCeEEEEccCCEEEEEECCCCc
Confidence            44445555556666 899999999999987642    45899887   22111001135788875443   599999999


Q ss_pred             CCCCcceEEEeecccCCeEEecccceEEEEecC
Q psy5694          89 NDGYKSYRCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      +|+| .|.|.+.+...++..... ..+|.|...
T Consensus        90 ~Dsg-~Y~C~~~~~~~~~~~fg~-GT~L~V~~~  120 (134)
T 3kg5_A           90 EDNG-IYFCQQKCNNTSEVYQGC-GTELRVMGF  120 (134)
T ss_dssp             TTCE-EEEEEEECTTTCCEEECC-CEEEEEECC
T ss_pred             CcCE-EEEEEEEcCCCCceEECC-CEEEEEecC
Confidence            9997 999999886323433444 668888854

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=98.85  E-value=8.9e-09  Score=69.10  Aligned_cols=86  Identities=9%  Similarity=0.064  Sum_probs=58.6

Q ss_pred             eEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eeeecc-c----CCCceEEEcc---C--ccEEEeccCCCCCCc
Q psy5694          29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYLN-T----DTGGKYVVLS---S--GDLYVFNATPNDGYK   93 (129)
Q Consensus        29 ~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i~~~-~----~~~~ry~vlp---s--G~L~I~nv~~~D~g~   93 (129)
                      +.+.+|++|.|.|.+......  ..+.|.+..     ..|... .    ...+||.+..   +  ..|.|+|++.+|+| 
T Consensus        11 v~~~~G~~v~L~C~~~~~~~~--~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~DsG-   87 (113)
T 1zox_A           11 VSGQEQGSLTVQCRYTSGWKD--YKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLRMSDAG-   87 (113)
T ss_dssp             EEEETTSCEEEEEEECGGGTT--SCEEEEESSSGGGCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGGGCE-
T ss_pred             EEEeCCCcEEEEeECCCCccc--ceEEEEeCCCCCCCeEEEEecCccccccCCCEEEEECCcCCEEEEEEccCCHHHCE-
Confidence            389999999999998654332  248999864     122111 0    1246887752   2  36999999999997 


Q ss_pred             ceEEEeecccCCeEEecccceEEEEecC
Q psy5694          94 SYRCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        94 ~Y~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      .|.|.+.+..  . ..+. ...|.|.++
T Consensus        88 ~Y~C~v~~~~--~-~~~~-~v~L~V~~~  111 (113)
T 1zox_A           88 IYWCGITKGG--L-DPMF-KVTVNIGPV  111 (113)
T ss_dssp             EEEEEECCSS--S-CCEE-EEEEEEECC
T ss_pred             EEEEeeEcCC--C-CccE-EEEEEEEcC
Confidence            9999999863  2 1232 457777654

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=98.85  E-value=8e-09  Score=82.05  Aligned_cols=93  Identities=13%  Similarity=0.187  Sum_probs=62.6

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeec--ceeeec-------------ccCCCceEEEccC-----ccEEE
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD--DVNIYL-------------NTDTGGKYVVLSS-----GDLYV   83 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d--~~~i~~-------------~~~~~~ry~vlps-----G~L~I   83 (129)
                      .+... .+.+|.++.|.|.+.+.+.. .+.++|+++  +..+..             .....+||.+..+     +.|.|
T Consensus       224 ~~~~~-~v~~G~~v~L~C~~~g~p~~-~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I  301 (438)
T 1qgc_4          224 ESGGG-LVKPGGSLKLSCTASGFIFN-RCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQM  301 (438)
T ss_dssp             EECCE-EECTTCCEEEEEEEESSCGG-GSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEE
T ss_pred             cCCce-EEecCCcEEEEEEEcccccC-CcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEE
Confidence            34455 78999999999999876632 256899997  322210             0012578888653     37999


Q ss_pred             eccCCCCCCcceEEEeecccCC-eE-EecccceEEEEec
Q psy5694          84 FNATPNDGYKSYRCRTVNKITG-ES-QASVFQTRLSITG  120 (129)
Q Consensus        84 ~nv~~~D~g~~Y~C~a~N~ltg-e~-k~S~~~~~L~V~e  120 (129)
                      .+++.+|+| .|+|.|.|..++ .. ..+. ...|.|..
T Consensus       302 ~~v~~~D~G-~Y~C~a~n~~~~~~~~~~~~-~~~l~V~~  338 (438)
T 1qgc_4          302 SSLRSADTA-MYYCVRREDGGDEGFAYWGQ-GTVVTVSA  338 (438)
T ss_dssp             CSCCGGGCC-EEEEEECCSSSCCCCCSBCC-CEEEEECS
T ss_pred             CCCChhhCE-EEEEEEEccCCCccceeeCC-CEEEEEec
Confidence            999999998 999999995432 10 1122 45777764

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.85  E-value=9.5e-09  Score=76.04  Aligned_cols=90  Identities=18%  Similarity=0.317  Sum_probs=62.0

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eeee-cc--cCCCceEEEccC------ccEEEeccCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIY-LN--TDTGGKYVVLSS------GDLYVFNATPND   90 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i~-~~--~~~~~ry~vlps------G~L~I~nv~~~D   90 (129)
                      +... .|.+|.+|.|.|.+....    +.+.|++.+     ..|. ..  ....+||.+..+      +.|.|+|++.+|
T Consensus         8 p~~v-~v~~G~~v~L~C~~~~~~----~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D   82 (207)
T 1ypz_E            8 PSAL-SLHEGTDSALRCNFTTTM----RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLED   82 (207)
T ss_dssp             CSEE-EEETTCCEEEEEEESSCC----SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGG
T ss_pred             CCeE-EEccCCcEEEEEEEeCCC----eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHH
Confidence            4455 899999999999987543    258998853     1221 00  013478888754      579999999999


Q ss_pred             CCcceEEEeecccC--------CeEEecccceEEEEecC
Q psy5694          91 GYKSYRCRTVNKIT--------GESQASVFQTRLSITGK  121 (129)
Q Consensus        91 ~g~~Y~C~a~N~lt--------ge~k~S~~~~~L~V~ep  121 (129)
                      +| .|.|.+.|...        ++..... ..+|.|.+.
T Consensus        83 ~G-~Y~C~~~~~~~~~p~~~~~~~~~~~~-~t~L~V~~~  119 (207)
T 1ypz_E           83 SG-TYFCAADTWHISEGYELGTDKLVFGQ-GTQVTVEPK  119 (207)
T ss_dssp             CE-EEEEEEECBCCCTTCCCCCCCCEECC-CEEEEEECC
T ss_pred             CE-EEEEEEecCCcccccccccceeeecC-ccEEEEccC
Confidence            97 99999998631        2222233 568888853

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=98.84  E-value=1.9e-09  Score=86.39  Aligned_cols=73  Identities=15%  Similarity=0.128  Sum_probs=57.7

Q ss_pred             eeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCC
Q psy5694          26 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITG  105 (129)
Q Consensus        26 ~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltg  105 (129)
                      .+. .+.+|.++.|.|.+.+.|+   +.++|++|+.            .++++|.++  +++.+|+| .|+|.|.|.+ |
T Consensus       378 ~~~-~~~~g~~~~l~C~~~g~P~---p~i~W~~~g~------------~~~~~g~~~--~v~~~d~G-~Y~C~a~N~~-G  437 (450)
T 1z7z_I          378 GNW-TWPENSQQTPMCQAWGNPL---PELKCLKDGT------------FPLPIGESV--TVTRDLEG-TYLCRARSTQ-G  437 (450)
T ss_dssp             SEE-EEETTCEECCCCCCEEESC---CEEEEEETTT------------EECCTTSCE--ECCGGGCE-EEEEEEEETT-E
T ss_pred             Cce-eEcCCCeEEEEEecccCCC---CcEEEEECCc------------ccCCCCCeE--eEehhhCe-EEEEEEEeCC-C
Confidence            455 8899999999999987774   5789999973            244567766  79999997 9999999998 7


Q ss_pred             eEEecccceEEEEecC
Q psy5694         106 ESQASVFQTRLSITGK  121 (129)
Q Consensus       106 e~k~S~~~~~L~V~ep  121 (129)
                      +...   .+.|.|..|
T Consensus       438 ~~~~---~~~l~V~~~  450 (450)
T 1z7z_I          438 EVTR---EVTVNVLSP  450 (450)
T ss_dssp             EEEE---EEEEEEECC
T ss_pred             ceeE---EEEEEEEcC
Confidence            7433   558888764

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=98.84  E-value=1.2e-08  Score=77.88  Aligned_cols=94  Identities=14%  Similarity=0.132  Sum_probs=64.7

Q ss_pred             EeeeeeeEEEeCCeEEEEeeCCCCCCC---ceeEeEEeecc--e---ee-ecc----cCCCceEEEcc---CccEEEecc
Q psy5694          23 INVNYEHNVILGNTAVLRCQIPSYMSE---YIIVTSWIQDD--V---NI-YLN----TDTGGKYVVLS---SGDLYVFNA   86 (129)
Q Consensus        23 ~~v~~~~~V~~GntAvL~C~vp~~~~~---~v~v~sW~~d~--~---~i-~~~----~~~~~ry~vlp---sG~L~I~nv   86 (129)
                      ..+.+. .|.+|.+|.|.|.+.+.+..   -.+.+.|++++  .   .| ...    ....+||.+..   ++.|.|.+|
T Consensus        10 q~p~~v-~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v   88 (264)
T 2gjj_A           10 QTPSSL-PVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIGSV   88 (264)
T ss_dssp             EECSEE-EEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSC
T ss_pred             ecCCeE-EecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEECCC
Confidence            345555 89999999999998765521   13678999852  1   12 110    01257888764   347999999


Q ss_pred             CCCCCCcceEEEeecccCCeEEecccceEEEEecC
Q psy5694          87 TPNDGYKSYRCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        87 ~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      +.+|+| .|.|.+.|.. +. ..+. ...|.|..+
T Consensus        89 ~~~DsG-~Y~C~~~~~~-~~-~~~~-~~~L~V~~~  119 (264)
T 2gjj_A           89 KAEDLA-VYYCQQYSNY-PW-TFGG-GTRLEIKRG  119 (264)
T ss_dssp             CGGGCE-EEEEEECSSS-SC-EECC-CEEEEEECC
T ss_pred             CHHHCE-EEEEEEecCC-cc-EecC-CEEEEEEcC
Confidence            999997 9999999874 32 2233 458888865

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=98.84  E-value=2.2e-09  Score=84.01  Aligned_cols=71  Identities=17%  Similarity=0.153  Sum_probs=54.4

Q ss_pred             eEEEeCCeEEEEeeCCCCCCCceeEeEEeeccee-eec---------ccCCCceEEEcc------CccEEEeccCCCCCC
Q psy5694          29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVN-IYL---------NTDTGGKYVVLS------SGDLYVFNATPNDGY   92 (129)
Q Consensus        29 ~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~-i~~---------~~~~~~ry~vlp------sG~L~I~nv~~~D~g   92 (129)
                      +.|.+|+++.|.|.+.+.+   .+.+.|.+++.. +..         .....+|+.+..      ++.|.|.+++.+|+|
T Consensus         4 v~~~~G~~v~L~C~~~~~p---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G   80 (363)
T 1wio_A            4 VLGKKGDTVELTCTASQKK---SIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSD   80 (363)
T ss_dssp             EEEETTSCEEECCCCTTCS---SCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCE
T ss_pred             EEEeCCCeEEEEEEecCCC---ceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCE
Confidence            4789999999999998555   357899999843 211         012356787653      567999999999997


Q ss_pred             cceEEEeeccc
Q psy5694          93 KSYRCRTVNKI  103 (129)
Q Consensus        93 ~~Y~C~a~N~l  103 (129)
                       .|+|.|.|..
T Consensus        81 -~Y~C~~~n~~   90 (363)
T 1wio_A           81 -TYICEVEDQK   90 (363)
T ss_dssp             -EEEEEETTEE
T ss_pred             -EEEEEEEECC
Confidence             9999999974

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=98.84  E-value=1e-08  Score=76.21  Aligned_cols=91  Identities=19%  Similarity=0.256  Sum_probs=60.8

Q ss_pred             eeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e---ee-ecc---------cCCCceEEEcc-----CccEEEec
Q psy5694          26 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NI-YLN---------TDTGGKYVVLS-----SGDLYVFN   85 (129)
Q Consensus        26 ~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~---~i-~~~---------~~~~~ry~vlp-----sG~L~I~n   85 (129)
                      ... .+.+|++|.|.|.+.+.+.+ .+.+.|++++  .   .| ...         ....+||.+..     ++.|.|.+
T Consensus       135 ~~~-~v~~G~~v~L~C~~~~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~  212 (247)
T 1svz_A          135 GPE-LKKPGETVKISCKATNYAFT-DYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINN  212 (247)
T ss_dssp             CCE-EECTTCCEEEEEEEESSCGG-GSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECS
T ss_pred             Cce-eecCCCcEEEEEEEcCcccC-CcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECC
Confidence            344 68899999999999776422 2468999863  1   11 110         01257887753     35899999


Q ss_pred             cCCCCCCcceEEEeecccCCeEE-ecccceEEEEe
Q psy5694          86 ATPNDGYKSYRCRTVNKITGESQ-ASVFQTRLSIT  119 (129)
Q Consensus        86 v~~~D~g~~Y~C~a~N~ltge~k-~S~~~~~L~V~  119 (129)
                      ++.+|+| .|.|.|.|...|+.. .-....+|+|+
T Consensus       213 v~~~DsG-~Y~C~a~n~~~~~~~~~fg~gt~L~V~  246 (247)
T 1svz_A          213 LKNEDTA-TYFCVRDRHDYGEIFTYWGQGTTVTVS  246 (247)
T ss_dssp             CCGGGCE-EEEEEEEEGGGTEEEEEECCCEEEEEC
T ss_pred             CChhHCE-EEEEEEeccCCccceeEEcCCEEEEEe
Confidence            9999997 999999996434321 12225577775

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.84  E-value=4.2e-10  Score=88.57  Aligned_cols=90  Identities=22%  Similarity=0.304  Sum_probs=65.9

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEe
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a   99 (129)
                      .+...+.+. .+.+|+++.|.|.+.+.+.   +.+.|++++..+...   ..++....+|.|.|.+++.+|+|+.|+|.|
T Consensus       160 ~i~~~~~~~-~v~~G~~v~L~C~~~g~p~---p~i~W~~~~~~~~~~---~~~~~~~~~~~L~i~~v~~~D~G~~Y~C~a  232 (347)
T 2ifg_A          160 TLKVQVPNA-SVDVGDDVLLRCQVEGRGL---EQAGWILTELEQSAT---VMKSGGLPSLGLTLANVTSDLNRKNVTCWA  232 (347)
T ss_dssp             EEEEECCSS-CCBTTCCEEEEEEEECSSC---CCCCEEESCCCSSEE---ECCCCCSSEEEEEEESCCSTTTTCCEEECC
T ss_pred             ceeccCCce-EEeCCCcEEEEEEEecCCC---CEEEEEcCCceeecc---cccceecccceEEEeeCChHHCCCeEEEEE
Confidence            355566777 8999999999999977764   568999998544221   233445678999999999999965999999


Q ss_pred             ecccCCeEEecccceEEEEec
Q psy5694         100 VNKITGESQASVFQTRLSITG  120 (129)
Q Consensus       100 ~N~ltge~k~S~~~~~L~V~e  120 (129)
                      .|.. |..  +. ...|.|..
T Consensus       233 ~n~~-g~~--~~-~~~l~V~~  249 (347)
T 2ifg_A          233 ENDV-GRA--EV-SVQVNVSF  249 (347)
T ss_dssp             EETT-EEC--CE-EECCCCBE
T ss_pred             EcCC-CCE--EE-EEEEEEcC
Confidence            9986 543  22 34555543

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=98.83  E-value=8.1e-09  Score=82.00  Aligned_cols=91  Identities=16%  Similarity=0.246  Sum_probs=62.0

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCC-ceeEeEEeecc--ee---eec-----ccCCCceEEEccC---ccEEEeccCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSE-YIIVTSWIQDD--VN---IYL-----NTDTGGKYVVLSS---GDLYVFNATPND   90 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~-~v~v~sW~~d~--~~---i~~-----~~~~~~ry~vlps---G~L~I~nv~~~D   90 (129)
                      +.+. .|.+|++++|.|.+.+.+++ ..+.+.|++++  ..   |..     .....+||.+..+   +.|.|.+++.+|
T Consensus         8 p~~~-~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   86 (438)
T 1qgc_4            8 PASL-AVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVEADD   86 (438)
T ss_dssp             CSEE-EECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CCeE-EeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCCcCcC
Confidence            5555 89999999999998766531 12469999963  21   110     0112478887643   369999999999


Q ss_pred             CCcceEEEeecccCCeEEecccceEEEEec
Q psy5694          91 GYKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        91 ~g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      +| .|+|+|.|..+ . ..+. .+.|.|..
T Consensus        87 ~G-~Y~C~a~n~~~-~-~~~~-~~~l~V~~  112 (438)
T 1qgc_4           87 VA-TYYCQQSNEVP-L-TFGA-GTKLDLKR  112 (438)
T ss_dssp             CE-EEEEEECSSTT-C-CBCC-CEEEEECC
T ss_pred             Ce-eEEEEEecCCC-c-cccC-ceeEEecC
Confidence            97 99999999863 2 1122 45777753

>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A

Probab=98.83  E-value=2.8e-08  Score=67.04  Aligned_cols=92  Identities=15%  Similarity=0.171  Sum_probs=60.8

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc--------cCCCceEEEcc---Cc--cEEEec
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN--------TDTGGKYVVLS---SG--DLYVFN   85 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~--------~~~~~ry~vlp---sG--~L~I~n   85 (129)
                      +... .+.+|.+|.|.|.+..........+.|.+..     ..| .-.        ....+||.+..   ++  .|.|+|
T Consensus         5 ~~~~-~~~~G~~v~L~C~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   83 (116)
T 3bj9_1            5 PPAM-SSALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISE   83 (116)
T ss_dssp             CSEE-EEETTCCEEEEEEECSSSCGGGCCEEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEEEGGGTEEEEEECS
T ss_pred             CCcE-EEcCCCcEEEEEEeecCccCCCceEEEEEeCCCCCcEEEEEEecCCCceeCccCCCcEEEEecCCCceEEEEECC
Confidence            3344 8899999999999864321112458998743     122 200        01246887753   35  799999


Q ss_pred             cCCCCCCcceEEEeecccCCeEEecccceEEEEecC
Q psy5694          86 ATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        86 v~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      ++.+|+| .|.|.+.+..  ...-.. ..+|.|.+.
T Consensus        84 ~~~~DsG-~Y~C~~~~~~--~~~fg~-gT~L~V~~~  115 (116)
T 3bj9_1           84 LQPEDEA-MYYCAMGARS--THVFGS-GTQLTVLSA  115 (116)
T ss_dssp             CCGGGCE-EEEEEECCSS--CCEECC-CEEEEEESC
T ss_pred             CChhHCE-EEEEEEeCCC--CcEECC-CEEEEEecC
Confidence            9999997 9999999763  222333 668888764

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=98.83  E-value=9.6e-09  Score=74.09  Aligned_cols=59  Identities=14%  Similarity=0.192  Sum_probs=47.2

Q ss_pred             EeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeE
Q psy5694          32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGES  107 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~  107 (129)
                      ..+..+.|.|.+.+.|+   +.++|++|+..|..            +..|.|.+++.+|.| .|+|.|.|.+ |+.
T Consensus       108 ~~~~~v~L~C~~~g~p~---p~i~W~~~g~~l~~------------~~~~~i~~~~~~d~G-~Y~C~a~N~~-g~~  166 (176)
T 1hng_A          108 WECSNATLTCEVLEGTD---VELKLYQGKEHLRS------------LRQKTMSYQWTNLRA-PFKCKAVNRV-SQE  166 (176)
T ss_dssp             EETTTTEEEEECSSCSS---CEEEEEETTEEEEE------------ESSSEEEEECSCCSS-CEEEEEEETT-EEE
T ss_pred             ecCCcEEEEEEecCCCC---cEEEEEECCEECCC------------CCcEEEEEEEccCCe-EEEEEEEecC-CCc
Confidence            44667999999988775   67999999877643            234677899999998 9999999998 553

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=98.82  E-value=2.7e-08  Score=68.70  Aligned_cols=91  Identities=24%  Similarity=0.354  Sum_probs=59.7

Q ss_pred             eeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-e---eeecc-cCCCceEEEc--------cCccEEEeccCCCCCC
Q psy5694          26 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-V---NIYLN-TDTGGKYVVL--------SSGDLYVFNATPNDGY   92 (129)
Q Consensus        26 ~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-~---~i~~~-~~~~~ry~vl--------psG~L~I~nv~~~D~g   92 (129)
                      ... .|.+|.+|.|.|.+.+..+  .+.+.|++.+ .   .|... ....+|+...        .+..|.|.+++.+|+|
T Consensus        11 ~~~-~v~~G~~vtL~C~~~~~~~--~~~v~W~r~~~~~~~li~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG   87 (127)
T 2jju_A           11 KSV-SVAAGESATLRCAMTSLIP--VGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPADAG   87 (127)
T ss_dssp             SEE-EEETTSCEEECCEESCCCS--CCCEEEEECSSTTCEEEEESSSSCCTTEEEC-------CCBCCEEECSCCGGGCE
T ss_pred             CeE-EEeCCCCEEEEEEEeCCCC--CCEEEEEecCCCCcEEEEECCCCccCcEEeeEeeeecCCCEEEEEECCCCHHHCE
Confidence            344 8999999999999865422  2468999865 1   23321 1111366542        2567999999999997


Q ss_pred             cceEEEeecccCC---eEEecccceEEEEecC
Q psy5694          93 KSYRCRTVNKITG---ESQASVFQTRLSITGK  121 (129)
Q Consensus        93 ~~Y~C~a~N~ltg---e~k~S~~~~~L~V~ep  121 (129)
                       .|.|.+.|.-..   ...-.. ..+|.|.+.
T Consensus        88 -~Y~C~~~~~~~~~~~~~~fg~-GT~L~V~~~  117 (127)
T 2jju_A           88 -TYYCVKFRKGSPDDVEFKSGA-GTELSVRAK  117 (127)
T ss_dssp             -EEEEEEEECCSSSCEEEEECC-CEEEEEEC-
T ss_pred             -EEEEEEEcCCCCccceEEeCC-CeEEEEeec
Confidence             999999985311   212233 568888754

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=98.82  E-value=2.2e-08  Score=75.72  Aligned_cols=94  Identities=12%  Similarity=0.207  Sum_probs=60.8

Q ss_pred             EeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc---------cCCCceEEEccCcc-----EE
Q psy5694          23 INVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN---------TDTGGKYVVLSSGD-----LY   82 (129)
Q Consensus        23 ~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~---------~~~~~ry~vlpsG~-----L~   82 (129)
                      .++... .|.+|++|.|.|.+.+...+ ...+.|.+..     ..| ...         ....+|+.+..++.     |.
T Consensus        28 ~~~~~~-~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~  105 (256)
T 3sob_H           28 VESGGG-LVQPGGSLRLSCAASGFTFT-NSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQ  105 (256)
T ss_dssp             EEECCC-EECTTCCEEEEEEEESSCGG-GSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEE
T ss_pred             EecCcE-EEcCCCCEEEEEEeeccccC-CCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEE
Confidence            344444 89999999999998653222 2468998742     122 100         12347888865443     99


Q ss_pred             EeccCCCCCCcceEEEeeccc--------CCeEEecccceEEEEec
Q psy5694          83 VFNATPNDGYKSYRCRTVNKI--------TGESQASVFQTRLSITG  120 (129)
Q Consensus        83 I~nv~~~D~g~~Y~C~a~N~l--------tge~k~S~~~~~L~V~e  120 (129)
                      |+|++.+|+| .|.|.+.+.-        ......+. ..+|.|..
T Consensus       106 I~~v~~~DsG-~Y~C~~~~~~~~~~~~~~~~~~~~~~-~~~l~V~~  149 (256)
T 3sob_H          106 MNSLRAEDTA-VYYCARGSGHVNAVKNYGYVMDYWGQ-GTLVTVSS  149 (256)
T ss_dssp             ECSCCGGGCE-EEEEEEESSCTTCSSCCTTSEEEECC-CEEEEECS
T ss_pred             ECCCCcccCE-EEEEEEecCCCccccccccceeEECC-CEEEEEec
Confidence            9999999997 9999998742        11222333 55777764

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=98.82  E-value=3.5e-09  Score=76.38  Aligned_cols=65  Identities=15%  Similarity=0.282  Sum_probs=48.9

Q ss_pred             EEeCCeEEEEeeCCCCCC-CceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          31 VILGNTAVLRCQIPSYMS-EYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        31 V~~GntAvL~C~vp~~~~-~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      +.+|..+.|.|.+.+..+ ...+.++|.+++..+.     +.++  ..++.|.|.++..+|.| .|+|.|.|..
T Consensus       135 ~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~~-----~~~~--~~~~~L~i~~~~~~~~g-~Y~C~a~n~~  200 (214)
T 2zg1_A          135 LESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPL-----DPET--TRSSELTLTPRPEDHGT-NLTCQMKRQG  200 (214)
T ss_dssp             CCTTCCEEEEEECTTCCSCSSCCEEEEESSTTSSS-----CSSC--CCSSEEEECCCTTCCSC-EEEEEEECC-
T ss_pred             ccCCCeEEEEEEeccCCCCCCCceEEEeCCCCccC-----CCCc--eeEEEEEEecccHHcCc-EEEEEEEeCC
Confidence            467999999999976521 2346799999984331     2232  46789999999888886 9999999976

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=98.82  E-value=2e-09  Score=77.84  Aligned_cols=70  Identities=17%  Similarity=0.320  Sum_probs=52.8

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeeccc------CCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT------DTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~------~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      .+..|+.+.|.|.+.+.++. .+.++|++|+..|....      ..++.|.+  ++.|.|.+++.+|.| .|+|+|.|..
T Consensus       125 ~~~~g~~v~l~C~~~g~~p~-~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~d~G-~Y~C~a~n~~  200 (213)
T 3mj8_L          125 EELKTNQATLVCMINGFYPA-DVAVTWEADGTPITQGVKTTQPSKSDSKYMA--TSYLTMTADAWKSRN-TFICKVTHGG  200 (213)
T ss_dssp             HHHTTTEEEEEEEEEEEBSS-CCEEEEEETTEEECTTEEECCCEEETTEEEE--EEEEEEESHHHHSCS-CEEEEEEETT
T ss_pred             ccccCCcEEEEEEeeceeCC-CeEEEEEcCCcccCCCcccCCcCccCCcEEE--EEEEEEeHHHcCCCC-EEEEEEEECC
Confidence            34479999999999875332 14789999998774310      02455655  477999999999997 9999999985

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=98.82  E-value=6.5e-09  Score=70.77  Aligned_cols=75  Identities=21%  Similarity=0.291  Sum_probs=52.9

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--eeeecccCCCceEEEc-----cCccEEEeccCCCCCCcceEE
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VNIYLNTDTGGKYVVL-----SSGDLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~~i~~~~~~~~ry~vl-----psG~L~I~nv~~~D~g~~Y~C   97 (129)
                      +... .|.+|.+|.|.|.+.+.+.. .+.+.|.++.  ..+......++||.+.     .+..|.|+|++.+|+| .|.|
T Consensus         7 p~~~-~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~g~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG-~Y~C   83 (113)
T 1sq2_N            7 PRSV-TKETGESLTINCVLRDASYA-LGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGG-TYRC   83 (113)
T ss_dssp             CSEE-EECTTCCEEEEEEECSCSSC-CCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCE-EEEE
T ss_pred             CccE-EEecCCCEEEEEEECCCcCC-CCEEEEEEeCCCCCceEeEEeCCCEEEEEeCCCCEEEEEECCCChhhCE-EEEE
Confidence            4555 88999999999998654422 2468998864  1110001235788764     2346999999999997 9999


Q ss_pred             Eeecc
Q psy5694          98 RTVNK  102 (129)
Q Consensus        98 ~a~N~  102 (129)
                      .+.|.
T Consensus        84 ~~~~~   88 (113)
T 1sq2_N           84 GLGVA   88 (113)
T ss_dssp             EECBT
T ss_pred             EEEeC
Confidence            99984

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=98.82  E-value=1.1e-08  Score=78.56  Aligned_cols=94  Identities=22%  Similarity=0.265  Sum_probs=61.2

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecc--eeee----cc----cCCCceEEEccCcc---EEEeccCCCCCCcceE
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VNIY----LN----TDTGGKYVVLSSGD---LYVFNATPNDGYKSYR   96 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~~i~----~~----~~~~~ry~vlpsG~---L~I~nv~~~D~g~~Y~   96 (129)
                      .+.+|+++.|.|.+.+.... .+.+.|++..  ..+.    ..    ....+||.+..++.   |.|.+++.+|+| .|.
T Consensus       150 ~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG-~Y~  227 (280)
T 3fku_X          150 SKGLRQTATLTCTGNSNNVG-NQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEA-DYY  227 (280)
T ss_dssp             EECTTCCEEEEEECCCCCCC-TTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCS-EEE
T ss_pred             EEecCCCEEEEEEecCCCCC-CceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCE-EEE
Confidence            88999999999999873211 2468998732  2111    00    11247888765554   999999999998 999


Q ss_pred             EEeecccCCeEEecccceEEEEecCCCCCC
Q psy5694          97 CRTVNKITGESQASVFQTRLSITGKLKSLC  126 (129)
Q Consensus        97 C~a~N~ltge~k~S~~~~~L~V~ep~~~~~  126 (129)
                      |.+.|..++....+. ..+|+|.......|
T Consensus       228 C~~~~~~~~~~~~g~-~t~l~V~~~~~~~P  256 (280)
T 3fku_X          228 CSTWDSSLSAVVFGG-GTKLTVLGQPKAAP  256 (280)
T ss_dssp             EEEEETTTTEEEEBC-CCEEEEC-------
T ss_pred             EEEecCCCCceEECC-CEEEEECCCCCCCC
Confidence            999997533444455 66899987655444

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.81  E-value=8.8e-09  Score=75.84  Aligned_cols=94  Identities=16%  Similarity=0.171  Sum_probs=61.1

Q ss_pred             EeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--ee---e---ec-------ccCCCceEEEccC-----ccEE
Q psy5694          23 INVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VN---I---YL-------NTDTGGKYVVLSS-----GDLY   82 (129)
Q Consensus        23 ~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~~---i---~~-------~~~~~~ry~vlps-----G~L~   82 (129)
                      ..+... .+.+|+++.|.|.+.+.+.+ .+.+.|++++  ..   +   .+       .....+||.+..+     +.|.
T Consensus       124 ~~~~~~-~v~~G~~v~L~C~~~g~p~~-~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~  201 (240)
T 1moe_A          124 QQSGAE-LVEPGASVKLSCTASGFNIK-DTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQ  201 (240)
T ss_dssp             EECCCE-EECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred             eCCCce-EEeCCCcEEEEEEEcCccCC-CCEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEE
Confidence            345555 78899999999999876532 2468999962  11   1   10       0012468887643     4699


Q ss_pred             EeccCCCCCCcceEEEeecccC-Ce-EEecccceEEEEe
Q psy5694          83 VFNATPNDGYKSYRCRTVNKIT-GE-SQASVFQTRLSIT  119 (129)
Q Consensus        83 I~nv~~~D~g~~Y~C~a~N~lt-ge-~k~S~~~~~L~V~  119 (129)
                      |.+++.+|+| .|.|.|.+... +. ...-....+|.|+
T Consensus       202 I~~v~~~D~G-~Y~C~a~~~~~~~~~~~~fg~gt~l~V~  239 (240)
T 1moe_A          202 LTSLTSEDTA-VYYCAPFGYYVSDYAMAYWGQGTSVTVS  239 (240)
T ss_dssp             ECSCCGGGCE-EEEEEECSTTSCTTSCCCCCCCEEEEEC
T ss_pred             ECcCCHHHCE-EEEEEEEecCCCCcCeEEECCCeEEEeC
Confidence            9999999997 99999995420 11 1112225578775

>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand complex, immunoglobulin-like sandwich, T cell, B cell, programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1

Probab=98.81  E-value=6.9e-08  Score=67.91  Aligned_cols=98  Identities=13%  Similarity=0.316  Sum_probs=63.8

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc-----cCCCceEEEc--cCc---cEEEeccCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN-----TDTGGKYVVL--SSG---DLYVFNATP   88 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~-----~~~~~ry~vl--psG---~L~I~nv~~   88 (129)
                      +... .|.+|.+|.|.|.+......  ..+.|++..     ..| ...     ....+||.+.  +++   .|.|++++.
T Consensus        16 p~~v-~v~~G~~vtL~C~~~~~~~~--~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~   92 (134)
T 3bik_B           16 PAWL-TVSEGANATFTCSLSNWSED--LMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRR   92 (134)
T ss_dssp             CSEE-EEETTSCEEEEEEESSCCTT--CEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEECSCCG
T ss_pred             CCeE-EEeCCCCEEEEEEeCCCCCC--cEEEEEEcCCCCCceEEEEEcCCCCCcccCCCEEEEecCCCCEEEEEECCCCh
Confidence            4444 88999999999998654322  458998742     122 111     1135799874  333   599999999


Q ss_pred             CCCCcceEEEeecccCCe-EEecccceEEEEecCCCCCCC
Q psy5694          89 NDGYKSYRCRTVNKITGE-SQASVFQTRLSITGKLKSLCT  127 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~ltge-~k~S~~~~~L~V~ep~~~~~~  127 (129)
                      +|+| .|.|.+.+...+. ...+. ..+|+|.+.....|+
T Consensus        93 ~Dsg-~Y~C~~~~~~~~~~~~~~~-gt~L~V~~~~~~~P~  130 (134)
T 3bik_B           93 NDSG-IYLCGAISLHPKAKIEESP-GAELVVTERILETST  130 (134)
T ss_dssp             GGCE-EEEEEEEECSSSCEEEECC-CEEEEEECCC-----
T ss_pred             HHCE-EEEEEEEeCCCCceEEEcC-CEEEEEeCCCCCCCC
Confidence            9997 9999998754232 22343 779999988776664

>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule, IGV, immunoglobulin variable, IGC, immunoglobulin constant, signaling protein; 2.04A {Homo sapiens}

Probab=98.80  E-value=3.4e-08  Score=67.98  Aligned_cols=91  Identities=13%  Similarity=0.176  Sum_probs=60.1

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecce--eeeccc------------CCCceEEEcc-CccEEEeccCC
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDV--NIYLNT------------DTGGKYVVLS-SGDLYVFNATP   88 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~--~i~~~~------------~~~~ry~vlp-sG~L~I~nv~~   88 (129)
                      .|+.. .+..|.++.|.|.++..  .-...+.|..+..  .+.+..            .-.+|..+.. +|.|.|.|++.
T Consensus         5 ~p~~V-~~~~G~sVtL~c~~~~~--~~~~~i~W~~~~~ia~~~~~~~~~~~~~~~~~~~f~~Rl~l~~~~~SL~I~nl~~   81 (111)
T 2pkd_A            5 EIFTV-NGILGESVTFPVNIQEP--RQVKIIAWTSKTSVAYVTPGDSETAPVVTVTHRNYYERIHALGPNYNLVISDLRM   81 (111)
T ss_dssp             CCEEE-EEETTSCEEECCCCCTT--CCEEEEEEESSSEEEEEECCCSSSCCEEEECSGGGTTCEEECTTTCCEEECSCCG
T ss_pred             CceEE-EEEeCCCEEEeCccCCC--CeeeEEEEecCCEEEEEECCCCCCcceeEEeCCCcCCcEEEeCCCEEEEECCCCH
Confidence            34444 88999999999998742  2256789986542  222211            1135677764 89999999999


Q ss_pred             CCCCcceEEEeecccCCeEEecccceEEEEec
Q psy5694          89 NDGYKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      +|+| .|+|.....- ++..... .-.|.|.+
T Consensus        82 ~DsG-~Y~c~i~~~~-~~~~~~~-~~~L~V~~  110 (111)
T 2pkd_A           82 EDAG-DYKADINTQA-DPYTTTK-RYNLQIYR  110 (111)
T ss_dssp             GGCE-EEEEEEEESS-TTSEEEE-EEEEEEEC
T ss_pred             HHCE-EEEEEEEeCC-CCceEEE-EEEEEEEc
Confidence            9997 9999997653 3211122 33566654

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.80  E-value=2.1e-08  Score=75.01  Aligned_cols=93  Identities=19%  Similarity=0.234  Sum_probs=62.6

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e---ee-eccc--------C-CCceEEEcc-----CccEEE
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NI-YLNT--------D-TGGKYVVLS-----SGDLYV   83 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~---~i-~~~~--------~-~~~ry~vlp-----sG~L~I   83 (129)
                      .+... .+.+|.+|.|.|.+.+...+ ...+.|++++  .   .| +...        . ..+||.+..     ++.|.|
T Consensus         7 ~p~~v-~~~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   84 (242)
T 1hxm_B            7 PQISS-TKTLSKTARLECVVSGITIS-ATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTI   84 (242)
T ss_dssp             CCSEE-EEETTCCEEEEEEEESSCTT-TSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEE
T ss_pred             CCceE-EecCCCcEEEEEEeCCcccc-CceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEE
Confidence            34555 89999999999998654111 2468998853  1   12 1110        1 357898763     457999


Q ss_pred             eccCCCCCCcceEEEeecccCC----eEEecccceEEEEec
Q psy5694          84 FNATPNDGYKSYRCRTVNKITG----ESQASVFQTRLSITG  120 (129)
Q Consensus        84 ~nv~~~D~g~~Y~C~a~N~ltg----e~k~S~~~~~L~V~e  120 (129)
                      +|++.+|+| .|.|.+.|.-.+    +...+. ...|.|..
T Consensus        85 ~~v~~~D~G-~Y~C~~~~~~~~~~~~~~~~~~-~~~L~V~~  123 (242)
T 1hxm_B           85 HNVEKQDIA-TYYCALWEAQQELGKKIKVFGP-GTKLIITD  123 (242)
T ss_dssp             CSCCGGGCE-EEEEEEEEECSSTTCEEEEECC-CEEEEEES
T ss_pred             CCCCcccCE-EEEEeeecCCccccccceeEcC-cEEEEEcc
Confidence            999999997 999999986311    222333 56888875

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.80  E-value=4.3e-09  Score=81.46  Aligned_cols=82  Identities=21%  Similarity=0.135  Sum_probs=57.8

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEc----cCccEEEeccCCCCCCcceEEEeecccCC
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL----SSGDLYVFNATPNDGYKSYRCRTVNKITG  105 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl----psG~L~I~nv~~~D~g~~Y~C~a~N~ltg  105 (129)
                      .|.+|+++.|.|.+.+.+    +.+.|.||+..+.+.    .++...    .++.|.|.+|+  |+| .|+|.|.|....
T Consensus       117 ~V~~G~~vtL~C~~~~~~----~~~~w~k~g~~~~~~----~~~~~~~~~~~~~~l~I~~v~--D~G-~Y~C~a~~~~~p  185 (257)
T 1b6u_A          117 TVLAGESVTLSCSSRSSY----DMYHLSREGEAHERR----FSAGPKVNGTFQADFPLGPAT--HGG-TYRCFGSFRDSP  185 (257)
T ss_dssp             TCBTTCEEEEEEECSSCC----SEEEEEETTSSCEEC----CBCBCCSSSCCBEEEEEEECC--SCE-EEEEEEECSSCT
T ss_pred             ccCCCCEEEEEEeCCCCC----cEEEEEECCcccCcc----cccccccCCceeEEEEecccc--cCE-EEEEEEEcCCCC
Confidence            578999999999987543    357999999665431    122222    26789999999  997 999999975321


Q ss_pred             --eEEecccceEEEEecCCC
Q psy5694         106 --ESQASVFQTRLSITGKLK  123 (129)
Q Consensus       106 --e~k~S~~~~~L~V~ep~~  123 (129)
                        -...|+ +..|.|+++..
T Consensus       186 ~~~s~~S~-pl~L~V~g~p~  204 (257)
T 1b6u_A          186 YEWSNSSD-PLLVSVTGNPS  204 (257)
T ss_dssp             TBBCCCCC-CEEECCBCCC-
T ss_pred             cccccCCC-CEEEEEeccCC
Confidence              123355 78899987643

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=98.80  E-value=1.8e-08  Score=75.04  Aligned_cols=89  Identities=21%  Similarity=0.200  Sum_probs=59.2

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e---eee-cc-------cCCCceEEEcc----CccEEEeccC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NIY-LN-------TDTGGKYVVLS----SGDLYVFNAT   87 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~---~i~-~~-------~~~~~ry~vlp----sG~L~I~nv~   87 (129)
                      +++. .|.+|.+|.|.|.+.. +   .+.+.|++++  .   .|. ..       ....+||.+..    ++.|.|++++
T Consensus         6 p~~v-~v~~G~~v~L~C~~~~-~---~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~   80 (238)
T 1bec_A            6 PRNK-VAVTGGKVTLSCQQTN-N---HNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELAT   80 (238)
T ss_dssp             CSEE-EEETTCCEEEEEEESS-C---CSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCC
T ss_pred             CCee-EEeCCCcEEEEEEeCC-C---CceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCC
Confidence            4455 8999999999999842 2   3579999863  1   111 00       01257888753    3579999999


Q ss_pred             CCCCCcceEEEeecccC--CeEEecccceEEEEec
Q psy5694          88 PNDGYKSYRCRTVNKIT--GESQASVFQTRLSITG  120 (129)
Q Consensus        88 ~~D~g~~Y~C~a~N~lt--ge~k~S~~~~~L~V~e  120 (129)
                      .+|+| .|.|.+.|..+  +....+. ...|.|..
T Consensus        81 ~~D~G-~Y~C~~~~~~~~~~~~~~~~-~~~l~V~~  113 (238)
T 1bec_A           81 PSQTS-VYFCASGGGRGSYAEQFFGP-GTRLTVLE  113 (238)
T ss_dssp             GGGCE-EEEEEEESCTTCGGGCEECC-CEEEEEES
T ss_pred             cccCE-EEEEEEecCCCCccccccCC-CEEEEEec
Confidence            99997 99999998742  1111222 34677765

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=98.80  E-value=1.2e-08  Score=73.30  Aligned_cols=65  Identities=12%  Similarity=0.201  Sum_probs=48.6

Q ss_pred             EeCCeEEEEeeCC-CCCCCceeEeEEeecceeeecccCCCceEEEccCccEE----EeccCCCCCCcceEEEeeccc
Q psy5694          32 ILGNTAVLRCQIP-SYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLY----VFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        32 ~~GntAvL~C~vp-~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~----I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      ..|+++.|.|.+. ++|+   +.++|++|+..|..   ...++...++|.|+    +.+++.+|.| .|+|.|.|..
T Consensus       119 ~~g~~~~l~C~~~~g~P~---p~i~W~k~g~~l~~---~~~~~~~~~~~~~~~~~~~~~v~~~d~g-~Y~C~a~n~~  188 (201)
T 1dr9_A          119 PTSNIRRIICSTSGGFPE---PHLSWLENGEELNA---INTTVSQDPETELYAVSSKLDFNMTTNH-SFMCLIKYGH  188 (201)
T ss_dssp             SSTTEEEEEEEEEEESSC---EEEEEEESSCEECC---SEEEEEECTTTCCEEEEEEEEEETTSCE-EEEEEEEETT
T ss_pred             CCCCeEEEEEecCCccCC---CEEEEEECCEECcc---ccceEEecCCCcEEEEEEEEEEEecCCC-EEEEEEecCc
Confidence            4588999999995 6664   67999999977743   23456566664542    3567788997 9999999987

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=98.79  E-value=1.9e-08  Score=67.79  Aligned_cols=87  Identities=15%  Similarity=0.298  Sum_probs=59.1

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc----cCCCceEEEcc---CccEEEeccCCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN----TDTGGKYVVLS---SGDLYVFNATPNDG   91 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~----~~~~~ry~vlp---sG~L~I~nv~~~D~   91 (129)
                      +... .|.+|.+|.|.|.+.+.+.   +.+.|++..     ..| ...    ....+||.+..   +..|.|.|++.+|+
T Consensus        11 p~~~-~~~~G~~v~L~C~~~~~~~---~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~Ds   86 (111)
T 1i3g_L           11 HKFM-STSVGDRVSITCKASQDVG---TAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSEDL   86 (111)
T ss_dssp             CSEE-ECCTTCCEEEEEEESSCCT---TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCEE-EEcCCCCEEEEEEeCCCCC---CCEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEcCCCEEEEEECCCCHHHC
Confidence            4444 8899999999999876542   458998854     122 110    01247888753   23699999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEe
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      | .|.|.+.|..  +..-.+ ..+|.|+
T Consensus        87 G-~Y~C~~~~~~--~~~fg~-GT~l~V~  110 (111)
T 1i3g_L           87 A-DYFCQQYSSY--PLTFGA-GTKLELK  110 (111)
T ss_dssp             S-EEEEEECSSS--SCEECC-CEEEEC-
T ss_pred             E-EEEEEEecCC--ceEECC-CeEEEEe
Confidence            8 9999999862  323333 5577764

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.79  E-value=2.2e-08  Score=70.70  Aligned_cols=81  Identities=15%  Similarity=0.208  Sum_probs=55.3

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      ..... .|.+|+++.|.|.+.+.+.+ ...+.|++++..|...    .++  ..++.|.|.  +.+|+| .|+|.+.|..
T Consensus         4 ~i~~~-~v~~G~~v~l~C~~~~~~~p-~~~~~W~k~~~~l~~~----~~~--~~~~~l~i~--~~~d~G-~Y~C~~~n~~   72 (184)
T 3b5h_A            4 TVFTT-VEDLGSKILLTCSLNDSATE-VTGHRWLKGGVVLKED----ALP--GQKTEFKVD--SDDQWG-EYSCVFLPEP   72 (184)
T ss_dssp             EEEEE-EEEETTEEEEEEEEESCSSC-CCEEEEESSSEEEECT----TCC--CSEEEEEEC--GGGCCE-EEEEEEESTT
T ss_pred             ceEEE-EEecCCCEEEEEECCCCCCC-ceEEEEEeCCEEeecc----ccc--CCcEEEEEe--chhhCe-EEEEEEECCc
Confidence            34455 78999999999998776543 2478999999777532    111  113456666  688997 9999999832


Q ss_pred             CCeEEecccceEEEEecCC
Q psy5694         104 TGESQASVFQTRLSITGKL  122 (129)
Q Consensus       104 tge~k~S~~~~~L~V~ep~  122 (129)
                            +. ...|.|..++
T Consensus        73 ------~~-~~~l~V~~~P   84 (184)
T 3b5h_A           73 ------MG-TANIQLHGPP   84 (184)
T ss_dssp             ------SC-EEEEEECCSC
T ss_pred             ------Cc-EEEEEEecCC
Confidence                  22 4577776543

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=98.79  E-value=1.1e-08  Score=79.41  Aligned_cols=88  Identities=16%  Similarity=0.053  Sum_probs=62.7

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCC--CCCceeEeEEeecceeeecccCCCceEEEccC----ccEEEeccCCCCCCcceEE
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSY--MSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS----GDLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~--~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlps----G~L~I~nv~~~D~g~~Y~C   97 (129)
                      .|++. .|..|++|.|.|.+.+.  +....+.+.|.+|+..|.     ++++..+.+    +.|.|.|++.+|+| .|.|
T Consensus         6 ~p~~~-~v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~~g~~l~-----~~~~~~~~~~~~~~~L~i~~~~~~d~g-~y~c   78 (313)
T 2d9q_B            6 SVSAP-IVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQP-----GGRQQRLSDGTQESIITLPHLNHTQAF-LSCS   78 (313)
T ss_dssp             EESCS-EECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCT-----TCEECCCSSSCCCEEEEESCCCSSEEE-EEEE
T ss_pred             ECCCc-EEcCCCCEEEEEEECCCCCCCCcccceEEEeCCEECC-----ccceEEEecCeEEEEEEEeccCCCccc-eEEe
Confidence            45666 78999999999999875  211236789999997762     245545555    45999999999997 9999


Q ss_pred             EeecccCCeEEecccceEEEEecCC
Q psy5694          98 RTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        98 ~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      ++.+.   ....+. .+.|.|..|+
T Consensus        79 ~~~~~---~~~~~~-~~~l~v~~~P   99 (313)
T 2d9q_B           79 LNWGN---SLQILD-QVELRAGYPP   99 (313)
T ss_dssp             EESSS---SEEEEE-EEEEEECCCC
T ss_pred             eecCC---CceeEE-EEEEccCCCC
Confidence            98753   223343 5577776543

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}

Probab=98.79  E-value=1e-08  Score=69.11  Aligned_cols=86  Identities=19%  Similarity=0.279  Sum_probs=57.1

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecc--------eeeeccc-----CCCceEEEcc-----CccEEEeccCCCCC
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--------VNIYLNT-----DTGGKYVVLS-----SGDLYVFNATPNDG   91 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--------~~i~~~~-----~~~~ry~vlp-----sG~L~I~nv~~~D~   91 (129)
                      .+.+|.+|.|.|.+.....+ ...+.|.+..        ..|+...     ...+||.+..     +..|.|+|++.+|+
T Consensus         8 ~~~~G~~v~L~C~~~~~~~~-~~~v~W~~~~~~~~~~~~~~i~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~Ds   86 (115)
T 2or7_A            8 QGLAGHPVTLPCIYSTHLGG-IVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNVSLTIENTVVGDG   86 (115)
T ss_dssp             EEETTSCEEECCBCCHHHHC-SCCEEEEESCHHHHTTTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCGGGC
T ss_pred             EEEcCCCEEEEEEeecCCCC-CEEEEEECCCCCcCCCceEEEEeCCeEcccccCccEEEecCccCCeEEEEEccCCHHHC
Confidence            88999999999998643212 2458999863        2222110     1356887642     45799999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEecC
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      | .|.|.+.+..  ... .. ...|.|.++
T Consensus        87 G-~Y~C~v~~~~--~~~-~~-~v~L~V~~~  111 (115)
T 2or7_A           87 G-PYCCVVEIPG--AFH-FV-DYMLEVKPE  111 (115)
T ss_dssp             E-EEEEEECCTT--SCE-EE-EEEEEEESC
T ss_pred             E-EEEEEEECCC--cee-EE-EEEEEEcCC
Confidence            7 9999999763  211 22 446666543

>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}

Probab=98.78  E-value=8.9e-09  Score=69.78  Aligned_cols=74  Identities=23%  Similarity=0.376  Sum_probs=50.2

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc----eeeeccc-CCCceEEEc-----c---CccEEEeccCCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD----VNIYLNT-DTGGKYVVL-----S---SGDLYVFNATPNDG   91 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~----~~i~~~~-~~~~ry~vl-----p---sG~L~I~nv~~~D~   91 (129)
                      +... .|.+|.+|.|.|.+.+..+  ...+.|++++    ..|.... ...+|+...     .   +..|.|+|++.+|+
T Consensus        14 p~~~-~~~~G~~v~L~C~~~~~~~--~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~Ds   90 (120)
T 2yz1_A           14 EKSV-SVAAGDSTVLNCTLTSLLP--VGPIKWYRGVGQSRLLIYSFTGEHFPRVTNVSDATKRNNMDFSIRISNVTPEDA   90 (120)
T ss_dssp             SSEE-EECTTCCEEECCEESCCCS--CCCEEEEESSSTTCEEEEEECEECTTTCCSEEECCBSSTTBCCEEECSCCGGGC
T ss_pred             CceE-EEeCCCCEEEEeEECCCCC--CcEEEEEcCCCCCcEEEEEcCCcccCcccceeeccccCCCeEEEEECCCCHHHC
Confidence            3444 8999999999999876422  2468999975    1332210 011233211     1   25799999999999


Q ss_pred             CcceEEEeecc
Q psy5694          92 YKSYRCRTVNK  102 (129)
Q Consensus        92 g~~Y~C~a~N~  102 (129)
                      | .|.|.+.|.
T Consensus        91 G-~Y~C~~~~~  100 (120)
T 2yz1_A           91 G-TYYCVKFQK  100 (120)
T ss_dssp             E-EEEEEEEEC
T ss_pred             E-EEEEEEEcC
Confidence            7 999999986

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=98.78  E-value=2.1e-08  Score=75.72  Aligned_cols=91  Identities=14%  Similarity=0.196  Sum_probs=59.6

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc---------cCCCceEEEccCcc-----EEEe
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN---------TDTGGKYVVLSSGD-----LYVF   84 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~---------~~~~~ry~vlpsG~-----L~I~   84 (129)
                      +... .|.+|++|.|.|.+.+...+ ...+.|++..     ..+ ...         ....+||.+..++.     |.|+
T Consensus         7 p~~v-~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (253)
T 3liz_H            7 SGGG-LVQPGGSLKLSCAASGFTFS-SFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMS   84 (253)
T ss_dssp             ECCC-EECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEEC
T ss_pred             CCCE-EECCCCcEEEEEEeeCcccc-CceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEEC
Confidence            4445 89999999999998653222 2468998742     122 100         11247888875443     9999


Q ss_pred             ccCCCCCCcceEEEeecccCC-eEEecccceEEEEe
Q psy5694          85 NATPNDGYKSYRCRTVNKITG-ESQASVFQTRLSIT  119 (129)
Q Consensus        85 nv~~~D~g~~Y~C~a~N~ltg-e~k~S~~~~~L~V~  119 (129)
                      |++.+|+| .|.|.+.|...+ ....+. ...|.|.
T Consensus        85 ~v~~~DsG-~Y~C~~~~~~~~~~~~~~~-~~~l~V~  118 (253)
T 3liz_H           85 SLKSEDTA-MYYCTRDPAGRAWFAYWGQ-GTLVTVS  118 (253)
T ss_dssp             SCCGGGCE-EEEEEECCBTTTBCCEECC-CEEEEEC
T ss_pred             CCChhhCE-EEEEEEecCCcceeeEECC-CEEEEEe
Confidence            99999997 999999986322 212232 4567776

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=98.78  E-value=1e-08  Score=77.74  Aligned_cols=96  Identities=16%  Similarity=0.151  Sum_probs=61.7

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCC--ceeEeEEeecc--e---ee-ecc----cCCCceEEEccC---ccEEEec
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSE--YIIVTSWIQDD--V---NI-YLN----TDTGGKYVVLSS---GDLYVFN   85 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~--~v~v~sW~~d~--~---~i-~~~----~~~~~ry~vlps---G~L~I~n   85 (129)
                      +...+.+. .|.+|++|.|.|.+.+.+..  -.+.+.|++++  .   .| ...    ...++||.+..+   +.|.|.+
T Consensus        18 v~~~p~~~-~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~   96 (268)
T 1x9q_A           18 MTQTPLSL-PVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINR   96 (268)
T ss_dssp             EEEECSEE-CCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESS
T ss_pred             EEeeCCeE-EecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEECC
Confidence            34445555 88999999999998766520  12568999853  1   12 110    012578887643   3799999


Q ss_pred             cCCCCCCcceEEEeecccCCeEEecccceEEEEecC
Q psy5694          86 ATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        86 v~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      ++.+|+| .|.|.+.|.. +. ..+. ...|.|..+
T Consensus        97 v~~~DsG-~Y~C~~~~~~-~~-~~~~-~~~L~V~~~  128 (268)
T 1x9q_A           97 VEAEDLG-VYFCSQSTHV-PW-TFGG-GTKLEIKSS  128 (268)
T ss_dssp             CCGGGCE-EEEEEECSSS-SC-EECC-CEEEC----
T ss_pred             CChhHCE-EEEEEEecCC-Cc-eEcC-CEEEEEccC
Confidence            9999997 9999999974 32 2233 457777754

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=98.78  E-value=4.6e-08  Score=73.61  Aligned_cols=89  Identities=26%  Similarity=0.262  Sum_probs=59.2

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc-------cCCCceEEEcc----CccEEEeccC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN-------TDTGGKYVVLS----SGDLYVFNAT   87 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~-------~~~~~ry~vlp----sG~L~I~nv~   87 (129)
                      +... .|.+|.+|.|.|.+.. .   .+.+.|+++.     ..| +..       ....+||.+..    ++.|.|+|++
T Consensus        10 p~~v-~v~~G~~v~L~C~~~~-~---~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~   84 (252)
T 1oga_E           10 PKYL-FRKEGQNVTLSCEQNL-N---HDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQ   84 (252)
T ss_dssp             CSEE-EEETTCCEEECCEECS-C---CSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCC
T ss_pred             CCeE-EEcCCCcEEEEEEeCC-C---CCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCC
Confidence            4455 8999999999999842 2   3578998853     112 111       01247888863    4689999999


Q ss_pred             CCCCCcceEEEeecccCCeEEecccceEEEEec
Q psy5694          88 PNDGYKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        88 ~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      .+|+| .|.|.+.|..+....... ...|.|..
T Consensus        85 ~~D~G-~Y~C~~~~~~~~~~~~~~-~~~l~V~~  115 (252)
T 1oga_E           85 KNPTA-FYLCASSSRSSYEQYFGP-GTRLTVTE  115 (252)
T ss_dssp             SCCCE-EEEEEEESSTTSCCEECC-CEEEEEES
T ss_pred             hhhCE-EEEEEEecCCccceeECC-CEEEEEec
Confidence            99997 999999986211111222 34667664

>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=98.76  E-value=4.2e-08  Score=66.30  Aligned_cols=90  Identities=20%  Similarity=0.218  Sum_probs=58.7

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc-------cCCCceEEEcc-----CccEEEecc
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN-------TDTGGKYVVLS-----SGDLYVFNA   86 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~-------~~~~~ry~vlp-----sG~L~I~nv   86 (129)
                      +... .|.+|.+|.|.|.+.....  ...+.|.+..     ..| ...       ....+||.+..     +..|.|+|+
T Consensus         7 p~~~-~~~~G~~vtL~C~~~~~~~--~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~   83 (116)
T 1tvd_A            7 SPDQ-TVASGSEVVLLCTYDTVYS--NPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPV   83 (116)
T ss_dssp             SCCE-EEETTCCEEECCEEECCSS--SCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSC
T ss_pred             CCcE-EEecCCeEEEEeEeEcCCC--CcEEEEEEeCCCCCcEEEEEECCcccccCcccCCCEEEEEecCCCEEEEEEccC
Confidence            4445 8899999999999854322  2458998753     122 111       01257888742     236999999


Q ss_pred             CCCCCCcceEEEeeccc-CCeEEecccceEEEEe
Q psy5694          87 TPNDGYKSYRCRTVNKI-TGESQASVFQTRLSIT  119 (129)
Q Consensus        87 ~~~D~g~~Y~C~a~N~l-tge~k~S~~~~~L~V~  119 (129)
                      +.+|+| .|.|.+.|.. .++..-.. ..+|.|.
T Consensus        84 ~~~DsG-~Y~C~~~~~~~~~~~~fg~-GT~l~V~  115 (116)
T 1tvd_A           84 RTEDSA-TYYCAFTLPPPTDKLIFGK-GTRVTVE  115 (116)
T ss_dssp             CGGGCE-EEEEEEECTTTTCCEEECC-CEEEEEE
T ss_pred             ChHHCE-EEEEEEeCCCCccceEECC-CeEEEEe
Confidence            999997 9999999842 13322232 5577775

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=98.76  E-value=1.1e-08  Score=78.88  Aligned_cols=72  Identities=15%  Similarity=0.235  Sum_probs=45.7

Q ss_pred             EEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc------cEEEeccCCCCCCcceEEEeecccC
Q psy5694          31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG------DLYVFNATPNDGYKSYRCRTVNKIT  104 (129)
Q Consensus        31 V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG------~L~I~nv~~~D~g~~Y~C~a~N~lt  104 (129)
                      +.+|+++.|.|.+.+.++. ...+.|++|+..|...  ...++....+|      .|.|.+++++|+| .|.|.|.|...
T Consensus       232 ~~~G~~v~l~C~~~g~~p~-~~~v~W~k~g~~l~~~--~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G-~Y~C~a~N~~~  307 (327)
T 2wng_A          232 VRAENQVNVTCQVRKFYPQ-RLQLTWLENGNVSRTE--TASTVTENKDGTYNWMSWLLVNVSAHRDDV-KLTCQVEHDGQ  307 (327)
T ss_dssp             CSSTTCCEEEEEEEEEBSS-CEEEEEEETTEEEEEE--ECCSCEECTTSCEEEEEEEEC-------CC-EEEEEEEETTC
T ss_pred             cCCCCcEEEEEEEccccCC-CcEEEEEECCeEccCc--ccCceEECCCCcEEEEEEEEEccccccCCC-EEEEEEEeCCC
Confidence            5689999999999875432 1268999999777532  12233333344      4889999999997 99999999984


Q ss_pred             Ce
Q psy5694         105 GE  106 (129)
Q Consensus       105 ge  106 (129)
                      .+
T Consensus       308 ~~  309 (327)
T 2wng_A          308 PA  309 (327)
T ss_dssp             CC
T ss_pred             CC
Confidence            33

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=98.76  E-value=6e-08  Score=70.01  Aligned_cols=93  Identities=16%  Similarity=0.168  Sum_probs=60.7

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc----cCCCceEEEcc---CccEEEeccCCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN----TDTGGKYVVLS---SGDLYVFNATPNDG   91 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~----~~~~~ry~vlp---sG~L~I~nv~~~D~   91 (129)
                      +... .|.+|.+|.|.|.+...+.   +.+.|++..     ..| +..    ....+||.+..   +..|.|.|++.+|+
T Consensus        23 p~~v-~v~~G~sVtL~C~~s~~~~---~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~sL~I~~v~~~Ds   98 (146)
T 2yc1_B           23 PATL-SVSPGERATLSCRASQSVR---SYLAWYQQKPGQAPRLLFSDASNRATGIPARFTGSGSGTDFTLTISSLEPEDF   98 (146)
T ss_dssp             CSEE-EECTTSCEEEEEEESSCCT---TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCEE-EEecCCCEEEEEEECCCCC---CEEEEEEECCCCCCEEEEEeCCccCCCcCCCeEEecCCCEEEEEECCCCHHHC
Confidence            3444 8999999999999876542   358998853     122 211    11247888754   34699999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEecCCCCC
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSITGKLKSL  125 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~~~~  125 (129)
                      | .|.|.+.|..  ...... ..+|.|.++...+
T Consensus        99 G-~Y~C~~~~~~--~~~fg~-GT~L~V~~~~~~~  128 (146)
T 2yc1_B           99 A-IYYCQQYRYS--PRTFGQ-GTKVEIKRAAAEQ  128 (146)
T ss_dssp             S-EEEEEECSSS--SCEECC-CEEEEEC------
T ss_pred             E-EEEEEEecCC--CCeECC-CEEEEEeCCcccc
Confidence            8 9999999863  223333 5689998776544

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=98.75  E-value=1.9e-08  Score=67.33  Aligned_cols=92  Identities=12%  Similarity=0.117  Sum_probs=59.2

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e---eeecc-c---CCCceEEEcc-----CccEEEeccCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NIYLN-T---DTGGKYVVLS-----SGDLYVFNATPND   90 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~---~i~~~-~---~~~~ry~vlp-----sG~L~I~nv~~~D   90 (129)
                      +... .|.+|++|.|.|.+......  ..+.|.+..  .   .|... .   ...+||.+..     +..|.|+|++.+|
T Consensus         3 p~~v-~~~~G~~v~L~C~~~~~~~~--~~v~W~r~~~~~~~~~l~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~D   79 (110)
T 2q87_A            3 ARTV-AGPVGGSLSVQCPYEKEHRT--LNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPANLSFTVTLENLTEED   79 (110)
T ss_dssp             EEEE-EECTTSCEEEEEECCGGGTT--SEEEEESCCSSSSCCCSEESSSTTCSEETTEEEEEEGGGTEEEEEESSCCGGG
T ss_pred             CcEE-EEeCCCcEEEEeEecCCcCC--ceEEEEecCCCCCCeEEEEeCCccccccCCEEEEEcCcCCEEEEEEccCCHHH
Confidence            3444 88999999999998654322  468998864  1   12110 0   1347887752     2379999999999


Q ss_pred             CCcceEEEeecccCCeEEecccceEEEEecCC
Q psy5694          91 GYKSYRCRTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        91 ~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      +| .|.|.+.+...|..  .....+|.|+.++
T Consensus        80 sG-~Y~C~~~~~~~g~~--~~~~~~v~v~V~p  108 (110)
T 2q87_A           80 AG-TYWCGVDTPWLQDF--HDPVVEVEVSVFP  108 (110)
T ss_dssp             CE-EEEEEEECTTSCCB--CCCSEEEEEEEC-
T ss_pred             CE-EEEEEEecCccCcc--CCccEEEEEEEec
Confidence            97 99999998752310  1113456665443

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=98.75  E-value=2.6e-09  Score=79.10  Aligned_cols=69  Identities=17%  Similarity=0.314  Sum_probs=52.1

Q ss_pred             EEeCCeEEEEeeCCCCC--CCceeEeEEeecceeeecc------cCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          31 VILGNTAVLRCQIPSYM--SEYIIVTSWIQDDVNIYLN------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        31 V~~GntAvL~C~vp~~~--~~~v~v~sW~~d~~~i~~~------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      +.+|++|.|.|.+.+.+  ++ .+.++|++++..+...      ...+++|..  ++.|.|.+++++|+| .|+|+|.|.
T Consensus        23 v~~G~~v~L~C~~~g~~~~p~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~--~~~L~I~~~~~~D~g-~Y~C~~~~~   98 (218)
T 2rgs_A           23 LMISLTPKVTCVVVDVSEDDP-DVQISWFVNNVEVHTAQTQTHREDYNSTIRV--VSTLPIQHQDWMSGK-EFKCKVNNK   98 (218)
T ss_dssp             HCTTSCCEEEEEEEEECTTSC-CEEEEEEETTEEECCCEEEEEEETTTTEEEE--EEEEECCHHHHHTTC-CEEEEEEET
T ss_pred             hccCCCeeEEEEEcCCccCCC-ceEEEEEECCccccCcccccccccCCCeEEE--EEEEEEcHHHcCCCC-eEEEEEECC
Confidence            68899999999997653  22 2579999998665321      012345544  468999999999997 999999998


Q ss_pred             c
Q psy5694         103 I  103 (129)
Q Consensus       103 l  103 (129)
                      .
T Consensus        99 ~   99 (218)
T 2rgs_A           99 D   99 (218)
T ss_dssp             T
T ss_pred             c
Confidence            5

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=98.75  E-value=4.1e-08  Score=75.62  Aligned_cols=93  Identities=13%  Similarity=0.203  Sum_probs=62.5

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e---ee-ecc---------cCCCceEEEcc-----CccEEE
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NI-YLN---------TDTGGKYVVLS-----SGDLYV   83 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~---~i-~~~---------~~~~~ry~vlp-----sG~L~I   83 (129)
                      ++... .|.+|.+|.|.|.+.+.+.. .+.+.|++.+  .   .| ...         ....+||.+..     ++.|.|
T Consensus         6 qp~~~-~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   83 (257)
T 3bn9_D            6 QSGGG-LVKPGGSLRLSCAASGFTFS-SYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQM   83 (257)
T ss_dssp             EECCE-EECTTCEEEEEEEEESSCGG-GCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             ccCCE-EEcCCCcEEEEEEeccccCC-CceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEE
Confidence            44555 88999999999998765322 2568998853  1   11 110         01247888764     347999


Q ss_pred             eccCCCCCCcceEEEeecccC-------C--e-EEecccceEEEEec
Q psy5694          84 FNATPNDGYKSYRCRTVNKIT-------G--E-SQASVFQTRLSITG  120 (129)
Q Consensus        84 ~nv~~~D~g~~Y~C~a~N~lt-------g--e-~k~S~~~~~L~V~e  120 (129)
                      ++++.+|+| .|.|.+.|..+       +  . ...+. ...|.|..
T Consensus        84 ~~v~~~DsG-~Y~C~~~~~~g~~~~~~~~~~~~~~~~~-~t~L~V~~  128 (257)
T 3bn9_D           84 SSLRAEDTA-VYYCARPYLTYPQRRGPQNVSPFDNWGQ-GTMVTVSS  128 (257)
T ss_dssp             ESCCGGGCE-EEEEEEECCSSTTSCCCCTTCCEEEECC-CEEEEECS
T ss_pred             CCCChhhCE-EEEEEEecCCCcccccccccceeeeeCC-cEEEEecC
Confidence            999999997 99999998752       0  1 12233 45888875

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=98.75  E-value=2.3e-08  Score=75.78  Aligned_cols=89  Identities=16%  Similarity=0.218  Sum_probs=62.2

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e---eeec------------ccCCCceEEEcc-----CccEE
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NIYL------------NTDTGGKYVVLS-----SGDLY   82 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~---~i~~------------~~~~~~ry~vlp-----sG~L~   82 (129)
                      +.+. .+.+|+++.|.|.+.+.++. .+.+.|++++  .   .|..            .....+||.+..     .+.|.
T Consensus       158 ~~~~-~v~~G~~v~L~C~~~~~~~~-~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~  235 (268)
T 1x9q_A          158 TGGG-LVQPGGAMKLSCVTSGFTFG-HYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQ  235 (268)
T ss_dssp             ECCE-EECTTCCEEEEEEEESSCGG-GCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEE
T ss_pred             CCce-EecCCCcEEEEEEecCcccc-ccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEE
Confidence            3455 88999999999999766532 2568998853  1   1210            012357888753     35799


Q ss_pred             EeccCCCCCCcceEEEeecccCCeEEecccceEEEEe
Q psy5694          83 VFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        83 I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      |.+++.+|+| .|.|.+.|.  ++..-.. ..+|.|+
T Consensus       236 I~~v~~~DsG-~Y~C~a~~~--~~~~fg~-Gt~L~V~  268 (268)
T 1x9q_A          236 MNNLRVEDTG-IYYCTGASY--GMEYLGQ-GTSVTVS  268 (268)
T ss_dssp             ECSCCGGGCE-EEEEEEEET--TEEEECC-CEEEEEC
T ss_pred             ECCCCHHHCE-EEEEEEccC--CccEECC-CEEEEeC
Confidence            9999999997 999999985  4544444 6677773

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=98.75  E-value=3.1e-09  Score=76.79  Aligned_cols=69  Identities=17%  Similarity=0.294  Sum_probs=50.6

Q ss_pred             EEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc--------cCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN--------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        31 V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~--------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      +..|+.+.|.|.+.++.+. ...++|++|+..|...        ...+++|.+  .+.|.|.+++.+|+| .|+|+|.|.
T Consensus       124 ~~~g~~~~l~C~~~g~~p~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~d~G-~Y~C~a~n~  199 (213)
T 3d9a_L          124 QLTSGGASVVCFLNNFYPK-DINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM--SSTLTLTKDEYERHN-SYTCEATHK  199 (213)
T ss_dssp             HHHTTEEEEEEEEEEEBSS-CCEEEEEETTEEECTTEEEEECCCCTTTCCEEE--EEEEEEEHHHHHHCC-EEEEEEECT
T ss_pred             hcCCCcEEEEEEEeeecCC-ceEEEEEcCCCcCcceeeecCCCccCCCCCEEE--EEEEEEeccccCCCC-EEEEEEEEc
Confidence            3479999999999763332 1268999999777432        012334433  358999999999997 999999998


Q ss_pred             c
Q psy5694         103 I  103 (129)
Q Consensus       103 l  103 (129)
                      .
T Consensus       200 ~  200 (213)
T 3d9a_L          200 T  200 (213)
T ss_dssp             T
T ss_pred             c
Confidence            5

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=98.74  E-value=9.2e-09  Score=75.71  Aligned_cols=91  Identities=11%  Similarity=0.061  Sum_probs=57.8

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCC---ceEEEccCccEEEeccCCCCCCcceEEEeecccCCe
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTG---GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGE  106 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~---~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge  106 (129)
                      .+..|+.+.|.|.+.+.++.....++|++|+..|.......   .+-.-..+..|.|..+.+.|.| .|+|+|.|.+++.
T Consensus       102 ~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g-~ytC~A~n~~~~~  180 (202)
T 1vca_A          102 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGK-VLVCRAKLHIDEM  180 (202)
T ss_dssp             CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTC-EEEEEEEECSCCC
T ss_pred             EEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEEeeeccCCC-eEEEEEEccccCC
Confidence            68999999999999875432235689999997774321000   0000111345678877766665 9999999998542


Q ss_pred             E----EecccceEEEEecCC
Q psy5694         107 S----QASVFQTRLSITGKL  122 (129)
Q Consensus       107 ~----k~S~~~~~L~V~ep~  122 (129)
                      .    ..+. ...|.|.-|+
T Consensus       181 ~~~~~~~~~-~~~L~V~y~P  199 (202)
T 1vca_A          181 DSVPTVRQA-VKELQVYISP  199 (202)
T ss_dssp             TTSCSEEEE-EEECCEECCC
T ss_pred             CCcceeEee-EEEEEEecCC
Confidence            1    1222 4577777554

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=98.74  E-value=5.3e-09  Score=75.75  Aligned_cols=71  Identities=17%  Similarity=0.282  Sum_probs=50.4

Q ss_pred             EEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc--------cCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN--------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        31 V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~--------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      +..|+++.|.|.+.++.+. ...++|++|+..|...        ...++.|.+.  ..|.|.+++++|+| .|+|+|.|.
T Consensus       123 ~~~g~~v~l~C~~~g~~p~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~--s~L~i~~~~~~d~G-~Y~C~a~n~  198 (210)
T 1lk3_L          123 QLATGGASVVCLMNNFYPR-DISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMS--STLSLTKADYESHN-LYTCEVVHK  198 (210)
T ss_dssp             HHTTTEEEEEEEEEEEBSS-CCEEEEEETTEECCTTEEEEECCCCTTTCCEEEE--EEEEEEHHHHHTCC-EEEEEEECT
T ss_pred             hccCCcEEEEEEEEeEeCC-ceEEEEEeCCccCCCCceEccCCccCCCCCEEEE--EEEEEChHHhccCC-cEEEEEEec
Confidence            4469999999999764332 1368999999776431        0112333322  46999999999997 999999998


Q ss_pred             cCC
Q psy5694         103 ITG  105 (129)
Q Consensus       103 ltg  105 (129)
                      ..+
T Consensus       199 ~~~  201 (210)
T 1lk3_L          199 TSS  201 (210)
T ss_dssp             TCS
T ss_pred             CCC
Confidence            533

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=98.74  E-value=4.8e-08  Score=72.55  Aligned_cols=92  Identities=12%  Similarity=0.171  Sum_probs=60.0

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc---------cCCCceEEEccCcc-----EEEe
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN---------TDTGGKYVVLSSGD-----LYVF   84 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~---------~~~~~ry~vlpsG~-----L~I~   84 (129)
                      +... .|.+|++|.|.|.+.+.... ...+.|++..     ..| ...         ....+||.+..++.     |.|+
T Consensus         7 ~~~~-~v~~G~~v~L~C~~~~~~~~-~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (230)
T 3n9g_H            7 SGAE-VRKPGASTKVSCKASGYTFT-HYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELS   84 (230)
T ss_dssp             CCCE-EECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             cCCE-EEcCCCCEEEEEEeecceec-CcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEEC
Confidence            3344 88999999999998643222 2468998732     122 111         11247898876554     9999


Q ss_pred             ccCCCCCCcceEEEeecccC-----CeEEecccceEEEEec
Q psy5694          85 NATPNDGYKSYRCRTVNKIT-----GESQASVFQTRLSITG  120 (129)
Q Consensus        85 nv~~~D~g~~Y~C~a~N~lt-----ge~k~S~~~~~L~V~e  120 (129)
                      |++.+|+| .|.|.+.+...     .....+. ...|.|..
T Consensus        85 ~v~~~DsG-~Y~C~~~~~~~~~~~~~~~~~~~-~~~l~V~~  123 (230)
T 3n9g_H           85 SLRSEDTA-VYYCARDWGSNYVWGSYPKYWGQ-GTLVTVSS  123 (230)
T ss_dssp             SCCGGGCE-EEEEEEECCCSSSTTCCEEEECC-CEEEEECS
T ss_pred             CCChhhCE-EEEEEEccCCCCcccccccccCC-CEEEEEEe
Confidence            99999997 99999987531     1222233 55777764

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=98.74  E-value=7.6e-09  Score=87.34  Aligned_cols=86  Identities=15%  Similarity=0.164  Sum_probs=59.2

Q ss_pred             eeeeeEEEeCCeEEEEeeCC-CCCCCceeEeEEeecceeeecccCC-CceEE----EccCccEEEeccCCCCCCcceEEE
Q psy5694          25 VNYEHNVILGNTAVLRCQIP-SYMSEYIIVTSWIQDDVNIYLNTDT-GGKYV----VLSSGDLYVFNATPNDGYKSYRCR   98 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp-~~~~~~v~v~sW~~d~~~i~~~~~~-~~ry~----vlpsG~L~I~nv~~~D~g~~Y~C~   98 (129)
                      +.+. .+..|+++.|.|.+. +.+   .+.++|++++..|...... ..+|.    ...++.|.|.+++.+|+| .|+|+
T Consensus       234 p~~~-~v~~G~~v~L~C~~~~g~p---~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG-~Y~C~  308 (527)
T 3qs9_E          234 LPQL-FLKVGEPLWIRCKAVHVNH---GFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTG-YYTCS  308 (527)
T ss_dssp             CCEE-EECTTSCEEEEEEEEESSS---CCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCE-EEEEE
T ss_pred             CCce-EEeCCCeEEEEEEEccCCC---CeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCe-EEEEE
Confidence            3455 889999999999996 555   3678999999766321000 01111    234577999999999997 99999


Q ss_pred             eecccCCeEEecccceEEEEecCC
Q psy5694          99 TVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        99 a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      |.|.      .+. .+.|.|.++.
T Consensus       309 a~N~------~~~-~~~L~V~~~p  325 (527)
T 3qs9_E          309 SSKH------PSQ-SALVTIVEKG  325 (527)
T ss_dssp             ETTE------EEE-EEEEEEC--C
T ss_pred             EEeC------CCc-eEEEEEEccC
Confidence            9997      233 5577776543

>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold, fluorogen activation, dimethylindole RE binding protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A

Probab=98.73  E-value=8.1e-08  Score=66.96  Aligned_cols=97  Identities=13%  Similarity=0.117  Sum_probs=64.6

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc----cCCCceEEEcc---CccEEEeccCCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN----TDTGGKYVVLS---SGDLYVFNATPNDG   91 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~----~~~~~ry~vlp---sG~L~I~nv~~~D~   91 (129)
                      +... .|.+|.+|.|.|.+...... ...+.|.+..     ..| ...    ....+||.+..   +..|.|.|++.+|+
T Consensus         7 p~~v-~v~~G~~vtL~C~~s~~~~~-~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~sL~I~~l~~~Ds   84 (123)
T 3t0v_A            7 SPSV-SGTPGQKVTIFCSGSSSNVE-DNSVYWYQQFPGTTPKVLIYNDDRRSSGVPDRFSGSKSGTSASLAISGLRSEDE   84 (123)
T ss_dssp             CCCE-EECTTCCEEEEEECCTTTTT-TSCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             cCeE-EEcCCCCEEEEEecCCCccC-CCeEEEEEECCCCCCEEEEEECCcCCCCCcCCEEEEccCCEEEEEECCCCHHHC
Confidence            4444 88999999999999765321 1458998742     222 211    11246887753   44699999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEecCCCCC
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSITGKLKSL  125 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~~~~  125 (129)
                      | .|.|.+.+....+..-.. ..+|.|.+..+.+
T Consensus        85 G-~Y~C~~~~~~~~~~~fG~-GT~l~V~~~~~~~  116 (123)
T 3t0v_A           85 A-DYYCLSWDDSLNGWVFGG-GTKVTVLDAASGA  116 (123)
T ss_dssp             E-EEEEEEEETTTTEEEEBC-CEEEEECCCC---
T ss_pred             E-EEEEEEEcCCCCceEECC-CEEEEEccCCCCc
Confidence            7 999999876433434444 6799999876654

>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC, immune system; HET: NAG; 2.40A {Mus musculus} SCOP: b.1.1.1 PDB: 3b9k_B*

Probab=98.73  E-value=1.1e-07  Score=64.13  Aligned_cols=87  Identities=20%  Similarity=0.315  Sum_probs=58.4

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecce--------ee-ecc---------cCCCceEEEcc--C---ccE
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDV--------NI-YLN---------TDTGGKYVVLS--S---GDL   81 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~--------~i-~~~---------~~~~~ry~vlp--s---G~L   81 (129)
                      +... .|.+|.+|.|.|.+.+...  ...+.|.+...        .| ...         ....+||.+..  +   ..|
T Consensus         5 p~~~-~~~~G~~vtL~C~~~~~~~--~~~v~W~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L   81 (115)
T 2atp_B            5 PSSL-LVQTNHTAKMSCEVKSISK--LTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFL   81 (115)
T ss_dssp             CSEE-EECTTSCEEEEEECCSSCC--SSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEE
T ss_pred             CCCE-EEcCCCcEEEEEEecCCCC--cccEEEEEeCCCCCCCccEEEEEEeCCCCeEecCCCccCcEEEEEeCCCCEEEE
Confidence            3444 8899999999999865432  24689987541        12 110         01247888764  3   369


Q ss_pred             EEeccCCCCCCcceEEEeecccCCeEEecccceEEEE
Q psy5694          82 YVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI  118 (129)
Q Consensus        82 ~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V  118 (129)
                      .|+|++.+|+| .|.|.+.+.  ++..-.. ..+|.|
T Consensus        82 ~I~~~~~~DsG-~Y~C~~~~~--~~~~fg~-GT~l~V  114 (115)
T 2atp_B           82 SIMNVKPEDSD-FYFCATVGS--PKMVFGT-GTKLTV  114 (115)
T ss_dssp             EECSCCGGGCE-EEEEEEECS--SCEEECC-CEEEEE
T ss_pred             EECCCCHHHCE-EEEEeEccC--CcccCCC-CEEEEE
Confidence            99999999997 999999863  3433333 556665

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=98.73  E-value=3e-08  Score=73.46  Aligned_cols=87  Identities=14%  Similarity=0.178  Sum_probs=54.7

Q ss_pred             EEEeCCeEEEEeeCCCCCCC--ceeEeEEeeccee------eeccc-------CCCceEEE----ccCccEEEeccCCCC
Q psy5694          30 NVILGNTAVLRCQIPSYMSE--YIIVTSWIQDDVN------IYLNT-------DTGGKYVV----LSSGDLYVFNATPND   90 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~--~v~v~sW~~d~~~------i~~~~-------~~~~ry~v----lpsG~L~I~nv~~~D   90 (129)
                      .|..|++|.|.|.+.+.++.  ....+.|++++..      +....       ..+.++..    ..++.|.|.||+.+|
T Consensus        14 ~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~~~D   93 (248)
T 3pv7_A           14 ITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEE   93 (248)
T ss_dssp             EEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSCCGGG
T ss_pred             EEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCCCHHH
Confidence            78999999999999554331  1235899997411      11100       00111110    123459999999999


Q ss_pred             CCcceEEEeecccCCeEEecccceEEEEecC
Q psy5694          91 GYKSYRCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        91 ~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      +| .|+|.+.|.. |.  .+. ...|.|.++
T Consensus        94 ~G-~Y~C~~~~~~-~~--~~~-~~~L~V~~~  119 (248)
T 3pv7_A           94 AG-EYRCEVVVTP-LK--AQG-TVQLEVVAS  119 (248)
T ss_dssp             CE-EEEEEEEETT-EE--EEE-EEEEEEEBC
T ss_pred             Ce-EEEEEEEeCC-cc--cee-EEEEEEecC
Confidence            97 9999999975 33  233 557777764

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=98.73  E-value=3.3e-08  Score=76.16  Aligned_cols=89  Identities=11%  Similarity=0.194  Sum_probs=60.9

Q ss_pred             EeeeeeeEEEeCCeEEEEeeCCCC----CCCceeEeEEeecceeeecccCCCceEEEcc--CccEEEeccCCCCCCcceE
Q psy5694          23 INVNYEHNVILGNTAVLRCQIPSY----MSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS--SGDLYVFNATPNDGYKSYR   96 (129)
Q Consensus        23 ~~v~~~~~V~~GntAvL~C~vp~~----~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp--sG~L~I~nv~~~D~g~~Y~   96 (129)
                      +.|++. .|..|++|.|.|.+.+.    +....+.+.|.+|+..|.     .++|.++.  .+.|.|.|++.+| | .|.
T Consensus         9 i~P~~~-~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i~-----~~~~~~~~~~~~~L~i~~~~~~~-g-~Y~   80 (303)
T 1i1r_A            9 ISPESP-VVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIP-----KEQYTIINRTASSVTFTDIASLN-I-QLT   80 (303)
T ss_dssp             EESSSC-EEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECC-----GGGCEEEETTEEEEEECSCCCSE-E-EEE
T ss_pred             EccCCc-eEeCCCCEEEEEEECCccccccCCChhheEEEECCEECC-----hhheeeeCCcEEEEEEcCcCCCc-e-EEE
Confidence            456777 89999999999999742    001136789999998773     24666653  3579999999985 4 999


Q ss_pred             EEeecccCCeEEecccceEEEEecC
Q psy5694          97 CRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        97 C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      |.|.|.  |+.......+.|.+..|
T Consensus        81 C~a~~~--g~~~~~~~~~~l~v~~~  103 (303)
T 1i1r_A           81 CNILTF--GQLEQNVYGITIISGLP  103 (303)
T ss_dssp             EEEEET--TTEEEEEEEEEEEEECC
T ss_pred             EecccC--CCcceEEEEEEEeccCC
Confidence            999884  43222222345666544

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=98.72  E-value=2.2e-08  Score=81.02  Aligned_cols=76  Identities=14%  Similarity=0.260  Sum_probs=54.6

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e---ee-ec---------ccCCCceEEEccC-----ccEEEe
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NI-YL---------NTDTGGKYVVLSS-----GDLYVF   84 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~---~i-~~---------~~~~~~ry~vlps-----G~L~I~   84 (129)
                      +... .|.+|++|+|.|.+.+.+.. .+.+.|++++  .   .| ..         .....+||.+..+     +.|.|.
T Consensus         7 ~~~~-~v~~G~~v~L~C~~~~~~~~-~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (457)
T 1hzh_H            7 SGAE-VKKPGASVKVSCQASGYRFS-NFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELR   84 (457)
T ss_dssp             CCCE-EECTTCCEEECEEEESSCGG-GSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             CCce-EEcCCCCEEEEEEecCcccc-CcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEEC
Confidence            3444 88999999999999765421 2458998852  1   12 10         0123579988643     379999


Q ss_pred             ccCCCCCCcceEEEeeccc
Q psy5694          85 NATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        85 nv~~~D~g~~Y~C~a~N~l  103 (129)
                      ||+.+|+| .|+|.+.|..
T Consensus        85 ~v~~~D~G-~Y~C~~~~~~  102 (457)
T 1hzh_H           85 SLRSADTA-VYYCARVGPY  102 (457)
T ss_dssp             SCCGGGCE-EEEEEECCCC
T ss_pred             CCCcccCE-EEEEEEecCC
Confidence            99999997 9999999975

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=98.72  E-value=2.4e-08  Score=76.73  Aligned_cols=92  Identities=11%  Similarity=0.147  Sum_probs=61.5

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e---ee-ec---------ccCCCceEEEccCc-----cEEEe
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NI-YL---------NTDTGGKYVVLSSG-----DLYVF   84 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~---~i-~~---------~~~~~~ry~vlpsG-----~L~I~   84 (129)
                      +.+. .|.+|++|+|.|.+.+.... .+.+.|++..  .   .| ..         .....+||.+..++     .|.|+
T Consensus         7 p~~~-~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (280)
T 3fku_X            7 SGAE-VKKPGSSVKVSCTSSEVTFS-SFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLR   84 (280)
T ss_dssp             CCCC-EECTTCCEEEEEEECCSCCT-TSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEEC
T ss_pred             CCCE-EECCCCcEEEEEEeeccCCC-CeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEEC
Confidence            4555 88999999999998764211 2468998742  1   11 10         00124688887443     69999


Q ss_pred             ccCCCCCCcceEEEeeccc------CCeEEecccceEEEEec
Q psy5694          85 NATPNDGYKSYRCRTVNKI------TGESQASVFQTRLSITG  120 (129)
Q Consensus        85 nv~~~D~g~~Y~C~a~N~l------tge~k~S~~~~~L~V~e  120 (129)
                      +++.+|+| .|.|.+.|..      .+....+. ..+|.|.+
T Consensus        85 ~v~~~DsG-~Y~C~~~~~~~~~g~~~~~~~~~~-~~~L~V~~  124 (280)
T 3fku_X           85 SLRSEDTA-VYYCARSPSYICSGGTCVFDHWGQ-GTLVTVSS  124 (280)
T ss_dssp             SCCSTTCE-ECCEEECSSSSSSSTTCCCCEECC-CCEEEECC
T ss_pred             CCChhhCE-EEEEEEecCCccccccccccEECC-CEEEEEcC
Confidence            99999997 9999999861      11223333 56888877

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=98.72  E-value=3e-08  Score=74.17  Aligned_cols=90  Identities=20%  Similarity=0.266  Sum_probs=61.9

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeec--ce---ee-ecc----cCCCceEEEccCc---cEEEeccCCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD--DV---NI-YLN----TDTGGKYVVLSSG---DLYVFNATPNDG   91 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d--~~---~i-~~~----~~~~~ry~vlpsG---~L~I~nv~~~D~   91 (129)
                      +... .|.+|+++.|.|.+.+.+..  ..+.|++.  +.   .+ ...    ....+||.+..++   .|.|.+++.+|+
T Consensus       148 p~~~-~v~~G~~v~L~C~~~~~~~~--~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~  224 (257)
T 3gkz_A          148 PAIM-SASPGEKVTLTCSASSSVSS--SHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDA  224 (257)
T ss_dssp             CSEE-EECTTCCEEEEEEESSCCCG--GGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CceE-EEeCCCcEEEEEEEccCccc--eEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHC
Confidence            4445 88999999999999876542  26899884  21   11 110    0123678765433   499999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEecC
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      | .|.|.+.|..  +..-.+ ..+|.|...
T Consensus       225 G-~Y~C~~~~~~--~~~fg~-gt~l~v~~~  250 (257)
T 3gkz_A          225 A-SYFCHQWSSF--PFTFGS-GTKLEIKRA  250 (257)
T ss_dssp             E-EEEEEECSSS--SCEECC-CEEEEECCC
T ss_pred             E-EEEEEEccCC--ceEEcC-CEEEEEEeC
Confidence            7 9999999863  434454 668888754

>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C

Probab=98.71  E-value=8.2e-08  Score=64.70  Aligned_cols=90  Identities=18%  Similarity=0.189  Sum_probs=59.6

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCC--CceeEeEEeecc-----eee-ecc----cCCCceEEEccC---ccEEEeccCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMS--EYIIVTSWIQDD-----VNI-YLN----TDTGGKYVVLSS---GDLYVFNATPN   89 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~--~~v~v~sW~~d~-----~~i-~~~----~~~~~ry~vlps---G~L~I~nv~~~   89 (129)
                      +... .|.+|.+|.|.|.+.+.+.  .-...+.|++..     ..| ...    ....+||.+..+   ..|.|+|++.+
T Consensus         8 p~~~-~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~   86 (113)
T 1dlf_L            8 PLSL-PVSLGNQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAE   86 (113)
T ss_dssp             CSEE-EECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGG
T ss_pred             CCEE-EEcCCCCEEEEEEccccccccCCCceEEEEEECCCCCCeEEEEecCccCCCCCCCEEEEccCCEEEEEECCCChH
Confidence            4444 8899999999999865541  012468998753     112 211    112578877533   26999999999


Q ss_pred             CCCcceEEEeecccCCeEEecccceEEEEe
Q psy5694          90 DGYKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        90 D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      |+| .|.|.+.|..  ...-.. ..+|.|+
T Consensus        87 DsG-~Y~C~~~~~~--~~~fg~-gT~l~V~  112 (113)
T 1dlf_L           87 DLG-VYFCSQSTHV--PFTFGS-GTKLEIK  112 (113)
T ss_dssp             GCE-EEEEEECSSS--SCEECC-CEEEEEC
T ss_pred             HCE-EEEEEEecCC--CcEECC-CEEEEEc
Confidence            997 9999999863  322333 5577774

>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A

Probab=98.71  E-value=4.1e-08  Score=66.14  Aligned_cols=69  Identities=16%  Similarity=0.337  Sum_probs=50.4

Q ss_pred             EEEeCCeEEEEeeCC-CCCCCceeEeEEeecc-----eeee---ccc-------CC-CceEEEccCc---cEEEeccCCC
Q psy5694          30 NVILGNTAVLRCQIP-SYMSEYIIVTSWIQDD-----VNIY---LNT-------DT-GGKYVVLSSG---DLYVFNATPN   89 (129)
Q Consensus        30 ~V~~GntAvL~C~vp-~~~~~~v~v~sW~~d~-----~~i~---~~~-------~~-~~ry~vlpsG---~L~I~nv~~~   89 (129)
                      .|.+|.+|.|.|.+. ...   ...+.|.+..     ..|.   ...       +. .+||.+..++   .|.|+|++.+
T Consensus        10 ~~~~G~~v~L~C~~~~~~~---~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~~~~~   86 (111)
T 2qhl_A           10 TVKRGENVTMECSMSKVKD---KDKLAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMTVNDQKFDLNIIGTRED   86 (111)
T ss_dssp             ECCTTCCEEECCBCTTCSC---GGGEEEEEECTTBCCEEEEEECSSSSCEEECTTCCCTTEEEEESSSBEEEEESSCCGG
T ss_pred             EEeCCCCEEEEEEccCCcc---cceEEEEEecCCCCCEEEEEEeccCCccccccCCCCCcEEEEEcCCeEEEEECCCChh
Confidence            788999999999986 543   2458998742     1221   110       11 5788876433   5999999999


Q ss_pred             CCCcceEEEeecc
Q psy5694          90 DGYKSYRCRTVNK  102 (129)
Q Consensus        90 D~g~~Y~C~a~N~  102 (129)
                      |+| .|.|.+.|.
T Consensus        87 DsG-~Y~C~~~~~   98 (111)
T 2qhl_A           87 DGG-EYFCGEVEG   98 (111)
T ss_dssp             GCE-EEEEEEEET
T ss_pred             HCE-EEEEEEccC
Confidence            997 999999985

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=98.71  E-value=2.9e-08  Score=69.95  Aligned_cols=79  Identities=19%  Similarity=0.302  Sum_probs=54.0

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--eeeecccCCCceEEEc-----cCccEEEeccCCCCCCcceEE
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VNIYLNTDTGGKYVVL-----SSGDLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~~i~~~~~~~~ry~vl-----psG~L~I~nv~~~D~g~~Y~C   97 (129)
                      +... .+.+|.++.|.|.+...... ...+.|++..  ..+......++||.+.     .+..|.|+|++.+|+| .|.|
T Consensus         7 p~~v-~v~~G~svtL~C~~s~~~~~-~~~v~Wyrq~~g~~~~~li~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG-~Y~C   83 (126)
T 3moq_A            7 PRTA-TKETGESLTINCVLRDASFE-LKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSG-TYKC   83 (126)
T ss_dssp             CSEE-EEETTCCEEEEEEEESCSSC-CCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCE-EEEE
T ss_pred             CceE-EEeCCCCEEEEEEeecCccC-CceEEEEEeCCCCCceEEEEeCCcEEEEEeCCCCEEEEEECcCChHhCE-EEEE
Confidence            4445 88999999999998654211 2458998852  1110001235788764     2346999999999997 9999


Q ss_pred             EeecccCCe
Q psy5694          98 RTVNKITGE  106 (129)
Q Consensus        98 ~a~N~ltge  106 (129)
                      .+.|....+
T Consensus        84 ~~~~~~~~~   92 (126)
T 3moq_A           84 QAFYVFFAE   92 (126)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEcCCCC
Confidence            999876433

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=98.71  E-value=1.2e-08  Score=75.94  Aligned_cols=69  Identities=17%  Similarity=0.294  Sum_probs=50.6

Q ss_pred             EEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc--------cCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN--------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        31 V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~--------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      +..|+++.|.|.+.++++. ...++|++|+..|...        ...+++|.+  .+.|.|.+++++|+| .|+|.|.|.
T Consensus       166 ~~~g~~v~l~C~~~g~~p~-~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~--~~~L~i~~~~~~d~G-~Y~C~a~n~  241 (254)
T 2c1o_A          166 QLTSGGASVVCFLNNFYPK-DINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM--SSTLTLTKDEYERHN-SYTCEATHK  241 (254)
T ss_dssp             HHHTTEEEEEEEEEEEBSS-CCEEEEEESSSEECTTEEEEECCCCTTTCCEEE--EEEEEEEHHHHHTCC-EEEEEEECT
T ss_pred             hccCCcEEEEEEEecccCC-CcEEEEEECCCcccCcceeccccccCCCCcEEE--EEEEEeccccccCCC-eEEEEEEcC
Confidence            3468999999999774332 1458999999776432        012344443  357999999999997 999999998


Q ss_pred             c
Q psy5694         103 I  103 (129)
Q Consensus       103 l  103 (129)
                      .
T Consensus       242 ~  242 (254)
T 2c1o_A          242 T  242 (254)
T ss_dssp             T
T ss_pred             C
Confidence            5

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=98.70  E-value=3e-09  Score=78.00  Aligned_cols=70  Identities=16%  Similarity=0.318  Sum_probs=52.0

Q ss_pred             EEeCCeEEEEeeCCCCC--CCceeEeEEeecceeeecc------cCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          31 VILGNTAVLRCQIPSYM--SEYIIVTSWIQDDVNIYLN------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        31 V~~GntAvL~C~vp~~~--~~~v~v~sW~~d~~~i~~~------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      |.+|++|.|.|.+.+.+  +. ...++|++++..+...      ...+++|..  ++.|.|.+++++|+| .|+|+|.|.
T Consensus        15 v~~G~~v~L~C~~~g~~~~p~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~--~~~L~I~~~~~~D~G-~Y~C~a~~~   90 (207)
T 2vol_A           15 LTITLTPKVTCVVVDISKDDP-EVQFSWFVDDVEVHTAQTKPREEQFNSTFRS--VSELPIMHQDWLNGK-EFKCRVNSA   90 (207)
T ss_dssp             HSTTSCCEEEEEEEEECTTCC-CCEEEEEETTEEECCCEEECCCEETTTEEEE--EEEEECCHHHHHTTC-CEEEEEECT
T ss_pred             hccCCceEEEEEEeCcccCCC-ceEEEEEECCccccccccCCCcCcCCCcEEE--EEEEEEehhHcCCCC-EEEEEEEcc
Confidence            68899999999997664  21 2368999998555311      012345543  468999999999998 999999998


Q ss_pred             cC
Q psy5694         103 IT  104 (129)
Q Consensus       103 lt  104 (129)
                      .+
T Consensus        91 ~~   92 (207)
T 2vol_A           91 AF   92 (207)
T ss_dssp             TC
T ss_pred             CC
Confidence            74

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*

Probab=98.70  E-value=2.2e-08  Score=88.35  Aligned_cols=90  Identities=20%  Similarity=0.307  Sum_probs=63.7

Q ss_pred             eeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCC
Q psy5694          26 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITG  105 (129)
Q Consensus        26 ~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltg  105 (129)
                      ++. .|..|+++.|+|.+.+ +   .+.+.|++++..|..   ...++.+..+|.|+|.+++.+|+| .|.|.|.|...|
T Consensus       541 ~~v-~v~~g~~~~L~C~~~s-p---~a~v~W~~~~~~l~~---~~~~~~~~~~~~LlI~~v~~~DsG-~Y~C~A~e~~~~  611 (663)
T 1olz_A          541 RQH-FFKHGGTAELKCSQKS-N---LARVFWKFQNGVLKA---ESPKYGLMGRKNLLIFNLSEGDSG-VYQCLSEERVKN  611 (663)
T ss_dssp             EEE-EEETTSCEEECCCCSC-T---TCEEEEEESSSBCCC---CSSSBCCTTTTCEEECSCCGGGCE-EEEEEEEEECSS
T ss_pred             eEE-EEecCCcEEEEccCCC-C---CCcEEEEECCeeccc---cCcceEEecCCeEEEEecCcccCe-EEEEEEEECccC
Confidence            444 8999999999999776 4   378999999966632   223454455899999999999997 999999998534


Q ss_pred             e--EEecccceEEEEecCCCCC
Q psy5694         106 E--SQASVFQTRLSITGKLKSL  125 (129)
Q Consensus       106 e--~k~S~~~~~L~V~ep~~~~  125 (129)
                      .  .+... ...|.|..|+...
T Consensus       612 ~~~~~~~~-~~~l~V~v~P~~~  632 (663)
T 1olz_A          612 KTVFQVVA-KHVLEVKVVPKPV  632 (663)
T ss_dssp             SEEEEEEE-EEEEEEEC-----
T ss_pred             CCceEEEE-EEEEEEEeCCccC
Confidence            2  22233 5577777765543

>3bdb_A Novel immune-type receptor 11; immunoglobulin variable domain-like beta-sandwich, stalk region, immune system; 2.80A {Ictalurus punctatus}

Probab=98.70  E-value=4.2e-08  Score=69.29  Aligned_cols=90  Identities=19%  Similarity=0.319  Sum_probs=62.3

Q ss_pred             EEEeCCeEEEEeeCC-CCCCCceeEeEEeecc-----eeee---ccc-------CC-CceEEEccCc---cEEEeccCCC
Q psy5694          30 NVILGNTAVLRCQIP-SYMSEYIIVTSWIQDD-----VNIY---LNT-------DT-GGKYVVLSSG---DLYVFNATPN   89 (129)
Q Consensus        30 ~V~~GntAvL~C~vp-~~~~~~v~v~sW~~d~-----~~i~---~~~-------~~-~~ry~vlpsG---~L~I~nv~~~   89 (129)
                      .|.+|.+|.|.|.+. ....   ..+.|++..     ..|.   ...       +. .+||.+..++   .|.|++++.+
T Consensus        10 ~v~~G~~vtL~C~~s~~~~~---~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~L~I~~~~~~   86 (137)
T 3bdb_A           10 TVKRGENVTMECSMSKVTNK---NNLAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMTVNDQKFDLNIIGARED   86 (137)
T ss_dssp             CCCTTCEECCCCBCTTCCCG---GGBEEEEECTTBCCEEEEEECSSSSCEEECTTCCCTTEEEEESSSBEEEEEESCCST
T ss_pred             EEcCCCCEEEEeecCCCcCc---ceEEEEEECCCCCCEEEEEEEcCCCcceecCcccCCcEEEEecCCEEEEEECCCCHH
Confidence            788999999999986 4432   458998743     1221   110       11 5788876443   5999999999


Q ss_pred             CCCcceEEEeecccCCeEEecccceEEEEecCCCCCC
Q psy5694          90 DGYKSYRCRTVNKITGESQASVFQTRLSITGKLKSLC  126 (129)
Q Consensus        90 D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~~~~~  126 (129)
                      |+| .|.|.+.+..  ...-.. ..+|.|.+...+.|
T Consensus        87 Dsg-~Y~C~~~~~~--~~~fg~-GT~L~V~~~~~~~~  119 (137)
T 3bdb_A           87 DGG-EYFCGEVEGI--IIKFTS-GTRLQFEGSNEGSK  119 (137)
T ss_dssp             TCE-EEEEEEECSS--CEEEEE-EEEECCCCCCCCSS
T ss_pred             HCE-EEEEEEccCC--eEEECC-CEEEEEECCCCCcc
Confidence            997 9999998753  323333 66899987665443

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=98.70  E-value=1.3e-08  Score=73.85  Aligned_cols=70  Identities=11%  Similarity=0.252  Sum_probs=49.1

Q ss_pred             EEEeCCeE-EEEeeC-CCCCCCceeEeEEeecceeeecccCCCceEEEccC------------ccEEEeccCCCCCCcce
Q psy5694          30 NVILGNTA-VLRCQI-PSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSS------------GDLYVFNATPNDGYKSY   95 (129)
Q Consensus        30 ~V~~GntA-vL~C~v-p~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlps------------G~L~I~nv~~~D~g~~Y   95 (129)
                      .+..|+.+ .|.|.+ .+.|+   +.++|++++..|.......+++.+..+            +.|.|......|.| .|
T Consensus       129 ~~~~g~~~~~l~C~~~~~~p~---p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g-~Y  204 (231)
T 2pet_A          129 SVMEDSAQEIATCNSRNGNPA---PKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDA-SF  204 (231)
T ss_dssp             CTTCCSEEEEEEEEEEEEBSC---CEEEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGC-EE
T ss_pred             eecCCCceEEEEEEeECcccC---CEEEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCc-eE
Confidence            46689988 999999 55553   568999999887543222346655432            56888744444476 99


Q ss_pred             EEEeeccc
Q psy5694          96 RCRTVNKI  103 (129)
Q Consensus        96 ~C~a~N~l  103 (129)
                      +|.|.|.+
T Consensus       205 ~C~a~n~~  212 (231)
T 2pet_A          205 HCAAHYSL  212 (231)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEcCC
Confidence            99999963

>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L

Probab=98.69  E-value=8.8e-08  Score=67.89  Aligned_cols=93  Identities=17%  Similarity=0.165  Sum_probs=60.8

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc----cCCCceEEEccCc---cEEEeccCCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN----TDTGGKYVVLSSG---DLYVFNATPNDG   91 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~----~~~~~ry~vlpsG---~L~I~nv~~~D~   91 (129)
                      +... .|.+|.+|.|.|.+......-...+.|++..     ..| ...    ....+||.+..++   .|.|+|++.+|.
T Consensus        12 ~~~v-~v~~G~~vtL~C~~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rf~~~~~~~~~sL~I~~v~~~Ds   90 (135)
T 1p4b_L           12 ESAL-TTSPGETVTLTCRSSTGAVTTSNYASWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDE   90 (135)
T ss_dssp             CSEE-EECTTCEEEEEEEETTSSCCGGGCCEEEEEEGGGEEEEEEETTTEECTTCCTTEEEEEETTEEEEEEESCCGGGC
T ss_pred             CCcE-EEcCCCCEEEEEEecCCCcCCCCEEEEEEECCCCCCEEEEEeCCccCCCCCCCEEEEcCCCEEEEEECCCChhHC
Confidence            3444 8899999999999865431012458998743     122 110    1124688876433   699999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEecCC
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      + .|.|.+.+..  ...-.. ..+|.|.+..
T Consensus        91 G-~Y~C~~~~~~--~~~fg~-GT~L~V~~~~  117 (135)
T 1p4b_L           91 A-IYFCALWYSN--HWVFGG-GTKLTVLGGG  117 (135)
T ss_dssp             E-EEEEEEECSS--CEEECC-CEEEEEC---
T ss_pred             E-EEEEEEecCC--CCEECC-CEEEEEEcCC
Confidence            7 9999998763  333344 6689998653

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.69  E-value=8.5e-09  Score=82.86  Aligned_cols=88  Identities=17%  Similarity=0.311  Sum_probs=60.1

Q ss_pred             eeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--ee---e-ecc---------cCCCceEEEccC-----ccEEEec
Q psy5694          26 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VN---I-YLN---------TDTGGKYVVLSS-----GDLYVFN   85 (129)
Q Consensus        26 ~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~~---i-~~~---------~~~~~ry~vlps-----G~L~I~n   85 (129)
                      ... .|..|++|.|.|.+.+.+.. .+.+.|++++  ..   + ...         ....+||.+..+     +.|.|.|
T Consensus         7 ~~~-~v~~G~~v~L~C~~~~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   84 (434)
T 1igy_B            7 GAE-LARPGASVKMSCKASGYTFT-TYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSS   84 (434)
T ss_dssp             CCC-EECTBCCEEECCEECSSCGG-GCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECS
T ss_pred             CCe-EecCCCCEEEEEEccCCccc-CceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECC
Confidence            344 88999999999999765311 3568999863  21   1 110         012578988653     4799999


Q ss_pred             cCCCCCCcceEEEeecccCCeEEecccceEEEEec
Q psy5694          86 ATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        86 v~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      |+.+|+| .|+|.+.|.. +.  .+. .+.|.|.+
T Consensus        85 v~~~D~G-~Y~C~~~~~~-~~--~~~-~~~l~V~~  114 (434)
T 1igy_B           85 LTSDDSA-VYYCVREGEV-PY--WGQ-GTTVTVSS  114 (434)
T ss_dssp             BCGGGCS-EECCCCSSSS-CC--CCC-CEECEECC
T ss_pred             CChHHCE-EEEEEEEccc-cc--cCC-ceEEEEcc
Confidence            9999998 9999999842 22  222 45777764

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=98.69  E-value=8.2e-08  Score=71.99  Aligned_cols=76  Identities=14%  Similarity=0.186  Sum_probs=52.5

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCC-ceeEeEEeecc-----eee---e-----cc-------cCCCceEEEccCcc---
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSE-YIIVTSWIQDD-----VNI---Y-----LN-------TDTGGKYVVLSSGD---   80 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~-~v~v~sW~~d~-----~~i---~-----~~-------~~~~~ry~vlpsG~---   80 (129)
                      +... .|.+|.+|.|.|.+.+.+.+ -...+.|++..     ..|   .     ..       ....+||.+..++.   
T Consensus         7 ~~~~-~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   85 (239)
T 3tv3_H            7 SGPT-LVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNL   85 (239)
T ss_dssp             ESCS-EECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTE
T ss_pred             CCCE-EEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCE
Confidence            3444 88999999999998654322 02368998742     122   1     00       02347888865432   


Q ss_pred             --EEEeccCCCCCCcceEEEeecc
Q psy5694          81 --LYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        81 --L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                        |.|+|++.+|+| .|.|.+.|.
T Consensus        86 ~~L~I~~v~~~DsG-~Y~C~~~~~  108 (239)
T 3tv3_H           86 VFLKLNSVTAADTA-TYYCARFGG  108 (239)
T ss_dssp             EEEEECSCCGGGCE-EEEEEEEEE
T ss_pred             EEEEECCCChhhCE-EEEEEEecC
Confidence              999999999997 999999876

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=98.68  E-value=6.7e-08  Score=72.15  Aligned_cols=93  Identities=18%  Similarity=0.163  Sum_probs=60.4

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc--------cCCCceEEEcc--C-c--cEEEe
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN--------TDTGGKYVVLS--S-G--DLYVF   84 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~--------~~~~~ry~vlp--s-G--~L~I~   84 (129)
                      ++... .|.+|.+|.|.|.+.+.+.. ...+.|++..     ..| ...        ....+||.+..  + |  .|.|+
T Consensus         6 qp~~~-~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   83 (232)
T 1dn0_B            6 QWGAG-LLKPSETLSLTCAVYGGSFS-DYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLS   83 (232)
T ss_dssp             EECCC-EECTTSCEEEEEEEESSCCS-SCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             CCCCE-EEeCCCcEEEEEEEccccCC-CceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEEC
Confidence            34555 88999999999998655322 2468998853     112 110        01247888863  2 2  79999


Q ss_pred             ccCCCCCCcceEEEeecccC-Ce--EEecccceEEEEec
Q psy5694          85 NATPNDGYKSYRCRTVNKIT-GE--SQASVFQTRLSITG  120 (129)
Q Consensus        85 nv~~~D~g~~Y~C~a~N~lt-ge--~k~S~~~~~L~V~e  120 (129)
                      |++.+|+| .|.|.+.+..+ +.  ...+. ..+|.|..
T Consensus        84 ~v~~~D~G-~Y~C~~~~~~~~~~~~~~~~~-~~~L~V~~  120 (232)
T 1dn0_B           84 SVTAADTA-VYYCARPPHDTSGHYWNYWGQ-GTLVTVSS  120 (232)
T ss_dssp             SCCGGGCE-EEEEEECSSTTSCSCCSEECC-CEEEEECS
T ss_pred             CCCcccCE-EEEEEEecCCcCCchhhhccc-ceEEEEcc
Confidence            99999997 99999984211 11  11222 45788876

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.68  E-value=3.9e-09  Score=76.37  Aligned_cols=69  Identities=14%  Similarity=0.234  Sum_probs=51.5

Q ss_pred             EEeCCeEEEEeeCCCCCCCceeEeEEeecceeeeccc-------CCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT-------DTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        31 V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~-------~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      +..|+++.|.|.+.++.+. .+.++|++|+..|.+..       +.++ |.+  ++.|.|.+++.+|+| .|+|+|.|..
T Consensus       125 ~~~g~~v~L~C~~~g~~p~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~-~~~--~s~L~i~~~~~~d~G-~Y~C~a~n~~  199 (212)
T 1nfd_E          125 ELRTNKATLVCLVNDFYPG-SATVTWKANGATINDGVKTTKPSKQGQN-YMT--SSYLSLTADQWKSHN-RVSCQVTHEG  199 (212)
T ss_dssp             HHHTTEECCCEEEEEEBSS-CCEEEEEETTEEECSSCBCCCCBCSSSC-EEE--EEBCCEEHHHHHTCS-CEEEEEECTT
T ss_pred             hccCCceEEEEEEEeeECC-ccEEEEEECCeEcCCCeecCCceecCCC-ceE--EEEEEEchhhcCCCC-eEEEEEEeCC
Confidence            4579999999999876322 25799999997774321       1123 443  367999999999997 9999999986


Q ss_pred             C
Q psy5694         104 T  104 (129)
Q Consensus       104 t  104 (129)
                      .
T Consensus       200 ~  200 (212)
T 1nfd_E          200 E  200 (212)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=98.68  E-value=6.2e-08  Score=72.68  Aligned_cols=93  Identities=14%  Similarity=0.158  Sum_probs=61.8

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e---eeecc-----cCCCceEEEcc-----CccEEEeccCC
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NIYLN-----TDTGGKYVVLS-----SGDLYVFNATP   88 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~---~i~~~-----~~~~~ry~vlp-----sG~L~I~nv~~   88 (129)
                      .+... .+.+|++|.|.|.+....+  .+.+.|++++  .   .+...     ....+||.+..     ++.|.|.|++.
T Consensus       142 ~p~~~-~v~~G~~v~L~C~~~~~~~--~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~  218 (259)
T 3omz_A          142 AQSSV-SMPVRKAVTLNCLYETSWW--SYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQL  218 (259)
T ss_dssp             CCCCE-EEETTCCEEECCEEECCCS--SCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCG
T ss_pred             eCCEE-EEcCCCCEEEEEECCCccC--CceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCCh
Confidence            34445 8999999999998865422  3578999853  1   11100     01247888763     34599999999


Q ss_pred             CCCCcceEEEeeccc--CCeEEecccceEEEEecC
Q psy5694          89 NDGYKSYRCRTVNKI--TGESQASVFQTRLSITGK  121 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~l--tge~k~S~~~~~L~V~ep  121 (129)
                      +|+| .|.|.+.+..  .++..-.+ ..+|.|.+.
T Consensus       219 ~DsG-~Y~C~~~~~~~~~~~~~fg~-GT~l~v~~~  251 (259)
T 3omz_A          219 EDSA-KYFCALGESLTRADKLIFGK-GTRVTVEPR  251 (259)
T ss_dssp             GGCS-EEEEEEESCSSTTCCCEECC-CEEEEEEC-
T ss_pred             hHCE-EEEEEEeCccCCCCceEECC-CCEEEEeeC
Confidence            9998 9999998631  24444444 668888854

>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A

Probab=98.67  E-value=2e-07  Score=62.71  Aligned_cols=89  Identities=11%  Similarity=0.099  Sum_probs=58.2

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-eccc----CCCceEEEc--c---CccEEEeccCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLNT----DTGGKYVVL--S---SGDLYVFNATPN   89 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~~----~~~~ry~vl--p---sG~L~I~nv~~~   89 (129)
                      +... .|.+|.+|.|.|.+....   ...+.|.+..     ..| ....    ...+||.+.  +   +..|.|+|++.+
T Consensus         7 p~~~-~~~~G~~v~L~C~~~~~~---~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~   82 (112)
T 2z35_A            7 GGQV-ALSEEDFLTIHCNYSASG---YPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQES   82 (112)
T ss_dssp             CSEE-EEETTCCEEECCEEECSS---CCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEESSCCST
T ss_pred             CCcE-EEcCCCCEEEEEEECCCC---CCeEEEEEECCCCCcEEeEEEecccCCccCCCEEEEEcCCCCEEEEEECCCChh
Confidence            4445 889999999999986543   2468998853     122 1110    124688874  2   346999999999


Q ss_pred             CCCcceEEEeeccc-CCeEEecccceEEEEe
Q psy5694          90 DGYKSYRCRTVNKI-TGESQASVFQTRLSIT  119 (129)
Q Consensus        90 D~g~~Y~C~a~N~l-tge~k~S~~~~~L~V~  119 (129)
                      |+| .|.|.+.... .+...-.. ..+|.|.
T Consensus        83 DsG-~Y~C~~~~~~~~~~~~fg~-GT~l~V~  111 (112)
T 2z35_A           83 DSA-VYYCALSENYGNEKITFGA-GTKLTIK  111 (112)
T ss_dssp             TCS-EEEEEEECTTTTCCEEECC-CEEEEEE
T ss_pred             hCE-EEEEEEEcCCCCceeEECC-CEEEEEe
Confidence            998 9999998321 12323333 5577775

>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A*

Probab=98.67  E-value=1.3e-07  Score=64.13  Aligned_cols=90  Identities=18%  Similarity=0.192  Sum_probs=58.9

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc-----cCCCceEEEc--cC---ccEEEeccCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN-----TDTGGKYVVL--SS---GDLYVFNATP   88 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~-----~~~~~ry~vl--ps---G~L~I~nv~~   88 (129)
                      +... .|.+|.+|.|.|.+.....  ...+.|.+..     ..| ...     ....+||.+.  ++   ..|.|+|++.
T Consensus         7 p~~~-~~~~G~~vtL~C~~~~~~~--~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~   83 (116)
T 1fo0_A            7 QTSI-SVMEKTTVTMDCVYETQDS--SYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQI   83 (116)
T ss_dssp             CCEE-EEETTCCEEECCEECCCCS--SCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CCcE-EEecCCcEEEEeEecCCCC--CeEEEEEEeCCCCCeEEEEEEccCCcCcccCCcEEEEEeCCCCEEEEEECCCCh
Confidence            3444 8899999999999876522  2468998753     122 111     0124788874  32   3599999999


Q ss_pred             CCCCcceEEEeeccc---CCeEEecccceEEEEe
Q psy5694          89 NDGYKSYRCRTVNKI---TGESQASVFQTRLSIT  119 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~l---tge~k~S~~~~~L~V~  119 (129)
                      +|+| .|.|.+.+..   .+...-.. ..+|.|+
T Consensus        84 ~DsG-~Y~C~~~~~~~~~~~~~~fg~-GT~l~V~  115 (116)
T 1fo0_A           84 EDSA-VYFCAMRGDYGGSGNKLIFGT-GTLLSVK  115 (116)
T ss_dssp             GGCE-EEEEEEECCCTTCSSCEEECC-CEEEEEE
T ss_pred             hhCE-EEEEEEEcCcCCCCceEEECC-CcEEEEe
Confidence            9997 9999999732   12323333 5577775

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=98.66  E-value=3.5e-08  Score=72.82  Aligned_cols=57  Identities=12%  Similarity=0.211  Sum_probs=45.4

Q ss_pred             EEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        31 V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      +..|++++|.|.+|      .+.++|+||+..|...        ...++.|.|.+++.+|+| .|+|.+.|.
T Consensus        15 ~~~G~~v~L~C~~p------~~~i~W~k~g~~l~~~--------~~~~~~L~i~~v~~~DsG-~Y~C~~~~~   71 (204)
T 1sy6_A           15 YQEDGSVLLTCDAE------AKNITWFKDGKMIGFL--------TEDKKKWNLGSNAKDPRG-MYQCKGSQN   71 (204)
T ss_dssp             CCSSSEEEEEECSC------SSEEEEEETTEEEEEE--------ESSCCCEEEEEGGGCCEE-EEEEESSSS
T ss_pred             ecCCCeEEEEEcCC------CCEEEEEECCEECCCC--------CCCCCeEEeCCCCcCCCE-EEEEEecCC
Confidence            35799999999982      2568999999777431        124688999999999997 999998664

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=98.66  E-value=8.2e-09  Score=74.62  Aligned_cols=69  Identities=19%  Similarity=0.343  Sum_probs=51.7

Q ss_pred             EEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc-------cCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        31 V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~-------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      +..|+++.|.|.+.+.+++ .+.++|++|+..|...       ...++.|.+.  ..|.|.+++.+|.| .|+|.|.|..
T Consensus       123 ~~~g~~v~l~C~~~g~~p~-~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~--s~L~i~~~~~~d~g-~Y~C~v~~~~  198 (211)
T 3tv3_L          123 ELQANKATLVCLISDFYPG-AVTVAWKADSSPVKAGVETTTPSKQSNNKYAAS--SYLSLTPEQWKSHR-SYSCQVTHEG  198 (211)
T ss_dssp             HHHTTCEEEEEEEEEEBSS-CCEEEEEETTEEECTTEEECCCEECTTSSEEEE--EEEEECHHHHHHSS-CEEEEEEETT
T ss_pred             hhcCCCeEEEEEeeeecCC-CeEEEEEECCeecCCCcccCCceECCCCCEEEE--EEEEEcHHHhCCCC-eEEEEEEECC
Confidence            3469999999999775432 3578999999777421       1224555543  56999999999997 9999999985

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=98.66  E-value=4.2e-08  Score=76.84  Aligned_cols=80  Identities=13%  Similarity=0.188  Sum_probs=58.6

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEe
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQA  109 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~  109 (129)
                      .+..|.+|.|.|.+.+.+.  .+.+.|++++..+..   ...++. ..+|.|.|.+++.+|+| .|+|.+    .|+.  
T Consensus        17 ~~~~G~~v~l~C~~~~~~~--~~~i~W~~~~~~~~~---~~~~~~-~~~~~L~i~~v~~~d~G-~Y~C~~----~g~~--   83 (325)
T 1n26_A           17 TSLPGDSVTLTCPGVEPED--NATVHWVLRKPAAGS---HPSRWA-GMGRRLLLRSVQLHDSG-NYSCYR----AGRP--   83 (325)
T ss_dssp             EECTTCCEEEECTTSCTTC--CSEEEEEEECSSSSC---CCEEEE-EESSEEEECSCCGGGCE-EEEEES----SSSC--
T ss_pred             ECCCCCcEEEEeCCCCCCC--CceEEEEECCccCCc---cccccc-cccceEEecccchhhCe-EeEEEe----CCEE--
Confidence            4568999999999876542  357899998855421   234554 45799999999999997 999993    3553  


Q ss_pred             cccceEEEEecCCC
Q psy5694         110 SVFQTRLSITGKLK  123 (129)
Q Consensus       110 S~~~~~L~V~ep~~  123 (129)
                      +. .+.|.|..|++
T Consensus        84 ~~-~~~L~V~~pP~   96 (325)
T 1n26_A           84 AG-TVHLLVDVPPE   96 (325)
T ss_dssp             SC-EEEEEECCCCC
T ss_pred             ee-eEEEEeccCCC
Confidence            33 57999987653

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=98.66  E-value=7.3e-08  Score=71.92  Aligned_cols=88  Identities=16%  Similarity=0.149  Sum_probs=59.5

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--eee----ec--cc------CCCceEEEcc-----CccEEEec
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--VNI----YL--NT------DTGGKYVVLS-----SGDLYVFN   85 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~~i----~~--~~------~~~~ry~vlp-----sG~L~I~n   85 (129)
                      +... .+.+|++|.|.|.+.+.+.. .+.+.|++++  ..+    ..  ..      ...+||.+..     ++.|.|.+
T Consensus       129 ~~~~-~v~~G~~v~L~C~~~g~~~~-~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~  206 (242)
T 2znx_A          129 SGPS-LVKPSQTLSLTCSVTGDSIT-SDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNS  206 (242)
T ss_dssp             ECCS-EECTTSCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECS
T ss_pred             CCcc-eecCCCeEEEEEEEEccccC-CcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECC
Confidence            3445 78999999999999765421 2468999852  211    10  00      1257888753     24799999


Q ss_pred             cCCCCCCcceEEEeecccC-CeEEecccceEEEEecC
Q psy5694          86 ATPNDGYKSYRCRTVNKIT-GESQASVFQTRLSITGK  121 (129)
Q Consensus        86 v~~~D~g~~Y~C~a~N~lt-ge~k~S~~~~~L~V~ep  121 (129)
                      ++.+|+| .|.|.|.|.+. |+      ..+|.|...
T Consensus       207 v~~~D~G-~Y~C~a~~~~~fG~------gt~l~v~~~  236 (242)
T 2znx_A          207 VTTEDTA-TYYCANXDGDYXGQ------GTLVTVSAA  236 (242)
T ss_dssp             CCGGGCE-EEEEEETTSSCBCC------CEEEEECCC
T ss_pred             CCcCcCE-EEEEeccCCcccCC------CeEEEEEec
Confidence            9999997 99999998531 33      447777643

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=98.65  E-value=3.2e-08  Score=70.29  Aligned_cols=72  Identities=17%  Similarity=0.169  Sum_probs=48.4

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc----cCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCC
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN----TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITG  105 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~----~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltg  105 (129)
                      .+..|+.+.+.|......+  .+.+.|.+++..+.+.    ...++.|.+  .+.|.|.+++++|+| .|+|+|.|....
T Consensus       132 ~~~~~~~~~~~c~~~~~~P--~~~~~w~~~~~~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~d~g-~YtC~a~N~~~~  206 (225)
T 4fmk_A          132 TIGPQSVAVARCVSTGGRP--PARITWISSLGGEAKDTQEPGIQAGTVTI--ISRYSLVPVGRADGV-KVTCRVEHESFE  206 (225)
T ss_dssp             CCSSSCEEEEEEEEEEEBS--CCEEEEECSSCCEEEEEEEECSSTTCEEE--EEEEEECCCGGGTTC-EEEEEEECTTCS
T ss_pred             eecceeeeeeeeeecCCCC--CCEEEEEECCccccCCcceEEecCCCEEE--EEEEEEeeCCHHHCC-EEEEEEEcCCCC
Confidence            5567888888888755433  2578999987433211    112233332  236999999999997 999999998743


Q ss_pred             e
Q psy5694         106 E  106 (129)
Q Consensus       106 e  106 (129)
                      +
T Consensus       207 ~  207 (225)
T 4fmk_A          207 E  207 (225)
T ss_dssp             S
T ss_pred             e
Confidence            3

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=98.64  E-value=6.7e-08  Score=79.07  Aligned_cols=73  Identities=21%  Similarity=0.361  Sum_probs=53.0

Q ss_pred             EEeCCeEEEEeeCCCCCC-CceeEeEEeecceeeeccc------CCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          31 VILGNTAVLRCQIPSYMS-EYIIVTSWIQDDVNIYLNT------DTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        31 V~~GntAvL~C~vp~~~~-~~v~v~sW~~d~~~i~~~~------~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      +..|.++.|.|.+.++++ +..+.++|++|+..|....      ..++.|.+  .+.|.|.+++++|+| .|.|.|.|..
T Consensus       331 v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~--~s~L~i~~~~~~d~G-~Y~C~a~n~~  407 (523)
T 2rcj_C          331 LMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRV--VSVLTVLHQNWLDGK-EYKCKVSNKA  407 (523)
T ss_pred             cccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEE--EEEEEECHHHhcCCC-eEEEEEeCCC
Confidence            688999999999987643 3346799999997774321      01122222  245999999999997 9999999986


Q ss_pred             CCe
Q psy5694         104 TGE  106 (129)
Q Consensus       104 tge  106 (129)
                      ++.
T Consensus       408 ~~~  410 (523)
T 2rcj_C          408 LPA  410 (523)
T ss_pred             CCC
Confidence            443

>1a2y_B IGG1-kappa D1.3 FV (heavy chain); complex (immunoglobulin/hydrolase), immunoglobulin V region, signal, hydrolase, glycosidase, bacteriolytic enzyme, egg white; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1a7r_H 1dvf_B 1g7h_B 1g7i_B 1g7j_B 1g7l_B 1g7m_B 1kir_B 1vfa_B 1vfb_B 1kiq_B 1a7o_H 1a7n_H 1a7p_H 1kip_B 1a7q_H 1dl7_H* 1bvk_B 1bvl_A 1p4i_H ...

Probab=98.64  E-value=2.1e-07  Score=63.07  Aligned_cols=90  Identities=10%  Similarity=0.131  Sum_probs=59.2

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc--------cCCCceEEEcc-----CccEEEec
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN--------TDTGGKYVVLS-----SGDLYVFN   85 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~--------~~~~~ry~vlp-----sG~L~I~n   85 (129)
                      +... .|.+|.+|.|.|.+.+.... ...+.|.+..     ..| ...        ....+||.+..     +..|.|+|
T Consensus         7 ~~~~-~~~~G~~vtL~C~~~~~~~~-~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   84 (116)
T 1a2y_B            7 SGPG-LVAPSQSLSITCTVSGFSLT-GYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNS   84 (116)
T ss_dssp             ECCS-EECTTSCEEEEEEEESSCTT-SSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECS
T ss_pred             CCCE-EEeCCCcEEEEEEEcCCCcC-CcEEEEEEeCCCCCcEEEEEEecCCCeeeCcccCCcEEEEEECCCCEEEEEECC
Confidence            3444 88999999999998644322 2468998743     122 111        01246888753     23699999


Q ss_pred             cCCCCCCcceEEEeecccCCeEEecccceEEEEe
Q psy5694          86 ATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        86 v~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      ++.+|+| .|.|.+.+.. +...-.. ..+|.|+
T Consensus        85 ~~~~Dsg-~Y~C~~~~~~-~~~~fg~-GT~l~V~  115 (116)
T 1a2y_B           85 LHTDDTA-RYYCARERDY-RLDYWGQ-GTTLTVS  115 (116)
T ss_dssp             CCGGGCE-EEEEEEESSS-SEEEECC-CEEEEEC
T ss_pred             CCHHHCE-EEEEEEecCC-CceEECC-CEEEEEe
Confidence            9999997 9999999752 3333333 5577774

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=98.64  E-value=7.5e-08  Score=71.61  Aligned_cols=75  Identities=15%  Similarity=0.135  Sum_probs=51.9

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-e--c-------ccCCCceEEEccCcc-----EEEe
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-Y--L-------NTDTGGKYVVLSSGD-----LYVF   84 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~--~-------~~~~~~ry~vlpsG~-----L~I~   84 (129)
                      +... .|..|.+|.|.|.+.+...+ ...+.|++..     ..| .  .       .....+||.+..++.     |.|+
T Consensus         7 ~~~~-~v~~G~~v~L~C~~~~~~~~-~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (226)
T 3mlr_H            7 SGGE-VKQPGQSLKISCKSSGYNFL-DSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWT   84 (226)
T ss_dssp             CCCE-EECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEES
T ss_pred             CCCE-EEecCCCEEEEEEecCcccc-CCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEEC
Confidence            3444 88999999999998643222 2468998742     122 1  1       012247888865443     9999


Q ss_pred             ccCCCCCCcceEEEeecc
Q psy5694          85 NATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        85 nv~~~D~g~~Y~C~a~N~  102 (129)
                      |++.+|+| .|.|.+.+.
T Consensus        85 ~v~~~DsG-~Y~C~~~~~  101 (226)
T 3mlr_H           85 TLQASDTG-KYFCTRLYL  101 (226)
T ss_dssp             SCCGGGCE-EEEEEEEEE
T ss_pred             CCCcccCE-EEEEeEccC
Confidence            99999997 999999875

>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor, IG-like domain, immune system; 1.00A {Mus musculus} PDB: 2icc_A 2ice_S* 2icf_S*

Probab=98.63  E-value=2.8e-07  Score=62.73  Aligned_cols=76  Identities=13%  Similarity=0.201  Sum_probs=50.2

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc----eee--e-cc------cCCCceEEEc----cCccEEEeccC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD----VNI--Y-LN------TDTGGKYVVL----SSGDLYVFNAT   87 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~----~~i--~-~~------~~~~~ry~vl----psG~L~I~nv~   87 (129)
                      +... .+..|.+|.|.|............+.|.+..    ..|  . ..      ..-.+|+.+.    .+..|.|+|++
T Consensus         8 ~~~v-~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~   86 (119)
T 2pnd_A            8 PESV-TGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHKVPGDVSLQINTLQ   86 (119)
T ss_dssp             CSEE-EEETTSCEEECCBCCCCTTCEEEEEEEEEEETTEEEEEEEEETTEEECCSGGGTTTEEECCSSTTBCCEEESSCC
T ss_pred             CceE-EEEcCCcEEEEEEEcCCCCCCceEEEEEEeCCCCceEEEEEcCCCceeecccccCcEEEccCCCCCEEEEEccCC
Confidence            3344 8999999999999865322222347998742    122  1 11      0113576654    24569999999


Q ss_pred             CCCCCcceEEEeecc
Q psy5694          88 PNDGYKSYRCRTVNK  102 (129)
Q Consensus        88 ~~D~g~~Y~C~a~N~  102 (129)
                      .+|+| .|.|.+.+.
T Consensus        87 ~~D~G-~Y~C~v~~~  100 (119)
T 2pnd_A           87 MDDRN-HYTCEVTWQ  100 (119)
T ss_dssp             GGGCE-EEEEEEEEE
T ss_pred             cccCE-EEEEEEEEC
Confidence            99997 999999773

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=98.63  E-value=1.5e-07  Score=76.70  Aligned_cols=92  Identities=13%  Similarity=0.181  Sum_probs=62.5

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e---ee-e--cc-------cCCCceEEEccC-----ccEEEe
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NI-Y--LN-------TDTGGKYVVLSS-----GDLYVF   84 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~---~i-~--~~-------~~~~~ry~vlps-----G~L~I~   84 (129)
                      ++.. .|.+|++|.|.|.+.+.+.. ...+.|+++.  .   .| .  ..       ....+||.+..+     +.|.|.
T Consensus         8 p~~~-~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   85 (475)
T 1iga_A            8 SGAE-VKKPGASVKVSCKASGYSFT-SYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLS   85 (475)
T ss_pred             CCcE-EEeCCCCEEEEEEecCCCCC-CceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEEC
Confidence            4445 89999999999999765322 2468999853  1   12 1  00       112578888643     479999


Q ss_pred             ccCCCCCCcceEEEeecccCCe--E-EecccceEEEEec
Q psy5694          85 NATPNDGYKSYRCRTVNKITGE--S-QASVFQTRLSITG  120 (129)
Q Consensus        85 nv~~~D~g~~Y~C~a~N~ltge--~-k~S~~~~~L~V~e  120 (129)
                      |++.+|+| .|.|.+.|..++.  . ..+. .+.|.|.+
T Consensus        86 ~v~~~D~G-~Y~C~~~~~~~~~~~~~~~~~-~~~l~V~~  122 (475)
T 1iga_A           86 SLRPEDTA-VYYCARDPYGGGKSEFDYWGQ-GTLVTVSS  122 (475)
T ss_pred             CCChhhCE-EEEEEEeccCCCccceeeecC-ceEEEecc
Confidence            99999997 9999999976321  1 2233 55788874

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=98.63  E-value=6.3e-08  Score=83.41  Aligned_cols=87  Identities=22%  Similarity=0.260  Sum_probs=63.8

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeE-Ee--ecceeeecccCCCceEEEcc----CccEEEeccCCCCCCcceE
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTS-WI--QDDVNIYLNTDTGGKYVVLS----SGDLYVFNATPNDGYKSYR   96 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~s-W~--~d~~~i~~~~~~~~ry~vlp----sG~L~I~nv~~~D~g~~Y~   96 (129)
                      .+.+. .|.+|++|.|.|.+.+.|..   .+. |+  +|+..|...     ++..+.    .|.|.|.+++.+|.| .|+
T Consensus       170 ~~~~~-~v~~G~~v~l~C~~~g~P~p---~i~~W~~~~~g~~l~~~-----~~~~~~~~~~~~~l~I~~~~~~d~g-~Y~  239 (731)
T 2v5y_A          170 RIQNV-EVNAGQFATFQCSAIGRTVA---GDRLWLQGIDVRDAPLK-----EIKVTSSRRFIASFNVVNTTKRDAG-KYR  239 (731)
T ss_dssp             CCCCE-EEETTSCEEEEEEEESCCCT---TCEEEEEESSSCCEEEE-----EEEECCSSEEEEEEEECSCCTTTCE-EEE
T ss_pred             cccce-EEeCCCcEEEEEEeCCCCCC---ceeEEEecCCCcccccc-----ceEEeccccceEEEEEcccccccCe-EEE
Confidence            45666 89999999999999887753   345 87  677666431     222221    379999999999997 999


Q ss_pred             EEeecccCCeEEecccceEEEEecCCC
Q psy5694          97 CRTVNKITGESQASVFQTRLSITGKLK  123 (129)
Q Consensus        97 C~a~N~ltge~k~S~~~~~L~V~ep~~  123 (129)
                      |+|.|.. |+. .+. .+.|.|..+..
T Consensus       240 c~A~n~~-G~~-~s~-~~~l~V~~~P~  263 (731)
T 2v5y_A          240 CMIRTEG-GVG-ISN-YAELVVKEPPV  263 (731)
T ss_dssp             EEEEETT-EEE-ECC-CEEEEEECCCC
T ss_pred             EEEECCC-CCc-cee-eEEEEEecCCC
Confidence            9999998 552 344 56888886654

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=98.62  E-value=1.4e-08  Score=74.50  Aligned_cols=69  Identities=17%  Similarity=0.299  Sum_probs=46.3

Q ss_pred             EEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc--------cCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN--------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        31 V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~--------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      +.+|+++.|.|.+.+.++.. ..++|++|+..|.+.        .+.++.|.+  .+.|.|.+++++|+| .|+|.|.|.
T Consensus       146 ~~~g~~v~L~C~~~g~~p~~-~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~d~g-~Y~C~a~n~  221 (233)
T 3bqu_C          146 QLTSGGASVVCFLNNFYPKD-INVKWKIDGSERQNGVLNSWTDQDSKDSTYSM--SSTLTLTKDEYERHN-SYTCEATHK  221 (233)
T ss_dssp             HHHTTEEEEEEEEEEEBSSC-EEEEEEEC-----CCEEEEECCCCTTTCCEEE--EEEEEEEHHHHHTCC-CEEEEEEEC
T ss_pred             hhcCCceEEEEEEccccCCc-eEEEEEECCeeCCCCceEecCCccCCCCCEEE--EEEEEECHHHhCCCC-CEEEEEEeC
Confidence            34699999999998754321 358999999766331        012334443  257999999999997 999999997


Q ss_pred             c
Q psy5694         103 I  103 (129)
Q Consensus       103 l  103 (129)
                      .
T Consensus       222 ~  222 (233)
T 3bqu_C          222 T  222 (233)
T ss_dssp             -
T ss_pred             C
Confidence            4

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=98.62  E-value=1.1e-07  Score=71.19  Aligned_cols=79  Identities=9%  Similarity=0.109  Sum_probs=57.0

Q ss_pred             EEEeCCeEEEEeeCCC-CCCCceeEeEEeecceeeecccCCCceEEEccCccEEEecc---CCCCCCc-ceEEEeecccC
Q psy5694          30 NVILGNTAVLRCQIPS-YMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNA---TPNDGYK-SYRCRTVNKIT  104 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~-~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv---~~~D~g~-~Y~C~a~N~lt  104 (129)
                      .|.+|+++.|.|.+.+ .|++ ...++|++|+..|.+       .....++.|.|.++   +.+|.|. .|+|.|.|.. 
T Consensus        14 ~v~~G~~v~l~C~~~g~~p~p-~~~v~W~k~~~~l~~-------~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~-   84 (265)
T 2oz4_A           14 VLEVDTQGTVVCSLDGLFPVS-EAQVHLALGDQRLNP-------TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGN-   84 (265)
T ss_dssp             EEETTEEEEEEEEEESCSCGG-GCEEEEEETTEECCC-------EEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETT-
T ss_pred             eEecCCCEEEEEEccCCCCCc-ceEEEEEeCCEECCc-------eEeeCCCeEEEEeecccccccCCcceEEEEEecCC-
Confidence            6788999999999987 4532 237999999977732       22334566777777   8889872 4999999986 


Q ss_pred             CeEEecccceEEEEec
Q psy5694         105 GESQASVFQTRLSITG  120 (129)
Q Consensus       105 ge~k~S~~~~~L~V~e  120 (129)
                      |..  +. .+.|.|..
T Consensus        85 ~~~--~~-~~~l~V~~   97 (265)
T 2oz4_A           85 QSQ--ET-LQTVTIYS   97 (265)
T ss_dssp             EEE--EE-EEEEEEEC
T ss_pred             CCc--EE-EEEEEEeC
Confidence            442  33 55888865

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=98.62  E-value=2.4e-08  Score=74.22  Aligned_cols=88  Identities=15%  Similarity=0.296  Sum_probs=52.1

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecceeeecc----cCCCceEEEccCccEEEeccCCCCCCcceEEEeecccC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDDVNIYLN----TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT  104 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~~~i~~~----~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~lt  104 (129)
                      .+..|+.+.|.|.+.++ |++  ..++|.+++..+...    ...+++|.+  ++.|.|.+++++| | .|+|.|.|...
T Consensus       132 ~~~~g~~v~L~C~~~g~~P~p--~~v~W~~~g~~~~~~~~~~~~~~g~~~~--~s~L~i~~~~~~~-g-~Y~C~a~n~~~  205 (227)
T 1mju_H          132 GDTSGSSVTLGCLVKGYFPEP--VTLTWNSGSLSSGVHTFPAVLQSDLYTL--SSSVTVTSSTWPS-Q-SITCNVAHPAS  205 (227)
T ss_dssp             ------CEEEEEEEEEEBSSC--CEEEEGGGTBCTTEEECCCEEETTEEEE--EEEEEECTTTTTT-S-CCEEEEEEGGG
T ss_pred             cccCCCcEEEEEEeecEeCCC--eEEEEecCCCcCCcEECCceecCCeEEE--EEEEEEchhhcCC-C-eEEEEEEECCC
Confidence            45679999999999875 432  268999998554110    001155644  4689999999977 6 99999999764


Q ss_pred             CeEEecccceEEEEecCCCCCCC
Q psy5694         105 GESQASVFQTRLSITGKLKSLCT  127 (129)
Q Consensus       105 ge~k~S~~~~~L~V~ep~~~~~~  127 (129)
                      +. +.+   ..+.+++|+..-|+
T Consensus       206 ~~-~~~---~~~~~~~~p~~~~~  224 (227)
T 1mju_H          206 ST-KVD---KKIEPRGPTIKPCP  224 (227)
T ss_dssp             TE-EEE---EECCCCCC------
T ss_pred             Cc-ceE---EEeCCCCCCCCCCC
Confidence            43 332   36677777665554

>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*

Probab=98.61  E-value=2.6e-07  Score=62.45  Aligned_cols=73  Identities=22%  Similarity=0.327  Sum_probs=50.9

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecccC-------C-CceEEEccCc--cEEEeccCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLNTD-------T-GGKYVVLSSG--DLYVFNATP   88 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~~~-------~-~~ry~vlpsG--~L~I~nv~~   88 (129)
                      +... .|.+|.+|.|.|.+.....   ..+.|.+..     ..| .....       . ++||.+..++  .|.|+|++.
T Consensus         8 p~~~-~v~~G~~vtL~C~~~~~~~---~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~L~I~~~~~   83 (112)
T 1fo0_B            8 PRWR-LVPRGQAVNLRCILKNSQY---PWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANM   83 (112)
T ss_dssp             CSEE-ECCTTCCEEEEEEESCTTC---CEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESC
T ss_pred             CCeE-EEecCCcEEEEEEeCCCCC---ceEEEEEECCCCCCEEEEEEeCCCceecCccccCCEEEEcCCCCeEEEcCCCH
Confidence            4444 8889999999999864432   458998743     122 11100       1 2788875322  799999999


Q ss_pred             CCCCcceEEEeecc
Q psy5694          89 NDGYKSYRCRTVNK  102 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~  102 (129)
                      +|+| .|.|.+.+.
T Consensus        84 ~Dsg-~Y~C~~~~~   96 (112)
T 1fo0_B           84 SQGR-TLYCTCSAD   96 (112)
T ss_dssp             CSCE-EEEEEEESS
T ss_pred             hHCE-EEEEEEEcC
Confidence            9997 999999864

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=98.61  E-value=5.1e-08  Score=70.79  Aligned_cols=70  Identities=16%  Similarity=0.246  Sum_probs=50.0

Q ss_pred             EeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc--------cCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN--------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~--------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      +.|+++.|.|.+.++++. ...++|++|+..|...        ...++.|.+.  ..|.|.+++++|+| .|+|.|.|..
T Consensus       127 ~~g~~v~L~C~~~g~~P~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~--s~L~i~~~~~~d~g-~Y~C~a~n~~  202 (216)
T 2xzc_L          127 LKSGTASVVCLLNNFYPR-EAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS--STLTLSKADYEKHK-VYACEVTHQG  202 (216)
T ss_dssp             HHTTEEEEEEEEEEEBSS-CCEEEEEETTEECCSSEEEEECCCCTTTCCEEEE--EEEEEEHHHHTTCC-EEEEEEECTT
T ss_pred             ccCCcEEEEEEEEeEcCC-ceEEEEEECCeecCCCeeEecCcccCCCCCEEEE--EEEEECHHHhCCCC-cEEEEEEcCC
Confidence            459999999999774332 1368999999776431        0122334332  37999999999997 9999999986


Q ss_pred             CC
Q psy5694         104 TG  105 (129)
Q Consensus       104 tg  105 (129)
                      ..
T Consensus       203 ~~  204 (216)
T 2xzc_L          203 LS  204 (216)
T ss_dssp             CS
T ss_pred             CC
Confidence            33

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=98.60  E-value=1.5e-07  Score=69.70  Aligned_cols=76  Identities=17%  Similarity=0.248  Sum_probs=51.0

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCC-CceeEeEEeecc-----eee-e--cc---------cCCCceEEEccCc-----cE
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMS-EYIIVTSWIQDD-----VNI-Y--LN---------TDTGGKYVVLSSG-----DL   81 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~-~~v~v~sW~~d~-----~~i-~--~~---------~~~~~ry~vlpsG-----~L   81 (129)
                      +... .|.+|.+|.|.|.+.+... ...-.+.|++..     ..| .  ..         ....+||.+..++     .|
T Consensus         7 ~~~~-~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   85 (232)
T 3qhz_H            7 SGPA-LVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVL   85 (232)
T ss_dssp             ECCS-EECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEE
T ss_pred             CCCE-EECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEE
Confidence            3344 7899999999999865321 122234998742     122 1  00         1123688886443     49


Q ss_pred             EEeccCCCCCCcceEEEeecc
Q psy5694          82 YVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        82 ~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      .|+|++.+|+| .|.|.+.|.
T Consensus        86 ~I~~v~~~DsG-~Y~C~~~~~  105 (232)
T 3qhz_H           86 TMTNMDPVDTA-TYYCARTLR  105 (232)
T ss_dssp             EECSCCGGGCE-EEEEEEECC
T ss_pred             EECcCChhhCE-EEEEEEeec
Confidence            99999999997 999999976

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=98.60  E-value=8.4e-09  Score=79.83  Aligned_cols=73  Identities=14%  Similarity=0.301  Sum_probs=51.2

Q ss_pred             EEEeCCeEEEEeeCCCCCC-CceeEeEEeecc-eeeeccc-----CCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          30 NVILGNTAVLRCQIPSYMS-EYIIVTSWIQDD-VNIYLNT-----DTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~-~~v~v~sW~~d~-~~i~~~~-----~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      .+..|++|.|.|.+.++++ +....++|++++ ..+....     ..+++|.  .++.|.|.+++++|+| .|+|+|.|.
T Consensus       124 ~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~--~~~~L~I~~~~~~D~G-~Y~C~a~n~  200 (323)
T 2wqr_A          124 DLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLT--VTSTLPVGTRDWIEGE-TYQCRVTHP  200 (323)
T ss_dssp             HHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEE--EEEEEECCHHHHHTTC-CEEEEEECT
T ss_pred             HhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEE--EEEEEEECHHHccCCC-CEEEEEECC
Confidence            4567999999999876543 211268999975 4442110     1234454  4568999999999997 999999998


Q ss_pred             cCC
Q psy5694         103 ITG  105 (129)
Q Consensus       103 ltg  105 (129)
                      ..+
T Consensus       201 ~~~  203 (323)
T 2wqr_A          201 HLP  203 (323)
T ss_dssp             TSS
T ss_pred             CCC
Confidence            633

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=98.60  E-value=7.8e-08  Score=71.21  Aligned_cols=85  Identities=14%  Similarity=0.226  Sum_probs=46.6

Q ss_pred             EEEeCCeEEEEeeCCC-CCCCceeEeEEeecceeeecc-------------cCCCceEEEccCccEEEeccCCCCCCcce
Q psy5694          30 NVILGNTAVLRCQIPS-YMSEYIIVTSWIQDDVNIYLN-------------TDTGGKYVVLSSGDLYVFNATPNDGYKSY   95 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~-~~~~~v~v~sW~~d~~~i~~~-------------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y   95 (129)
                      .+..|+.+.|.|.+.+ +|++  ..++|++|+..|...             ...++.|.+  +..|.|..++++|.| .|
T Consensus       129 ~~~~~~~~~L~C~~~g~~P~p--i~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~d~g-~Y  203 (248)
T 3pv7_A          129 VGMKENEDKYMCESSGFYPEA--INITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNV--TSCLKLNSSQEDPGT-VY  203 (248)
T ss_dssp             -------CEEEEEEEEEBSSC--CEEEEEEECSSSCSCEEECTTEEEEEEEECTTSCEEE--EEEEECC--CCCTTC-EE
T ss_pred             ccccCCCcEEEEEEccEECCC--eEEEEEECCccCCCccccccceeecccEECCCCCEEE--EEEEEEcCccccCCC-EE
Confidence            3567889999999987 4532  178999998533110             112344444  256889999988886 99


Q ss_pred             EEEeecccCCeEEecccceEEEEecC
Q psy5694          96 RCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        96 ~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      +|+|.|...++ ..+. ...|.|..|
T Consensus       204 tC~a~n~~~~~-~~~~-~v~l~V~~p  227 (248)
T 3pv7_A          204 QCVVRHASLHT-PLRS-NFTLTAARH  227 (248)
T ss_dssp             EEEEECTTCSS-CEEE-EECC-----
T ss_pred             EEEEECCCCCC-CcEE-EEEEEEcCC
Confidence            99999987543 2232 446666433

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=98.60  E-value=4.1e-08  Score=71.58  Aligned_cols=72  Identities=15%  Similarity=0.234  Sum_probs=52.7

Q ss_pred             EEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc--------cCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN--------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        31 V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~--------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      +..|+.+.|.|.+.+.+++ .+.++|.+|+..|.+.        ...++.|.+.  ..|.|.+++.+|.| .|+|+|.|.
T Consensus       147 ~~~g~~v~l~C~~~~~~p~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~--s~L~i~~~~~~d~g-~Y~C~a~n~  222 (237)
T 3sob_L          147 QLKSGTASVVCLLNNFYPR-EAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS--STLTLSKADYEKHK-VYACEVTHQ  222 (237)
T ss_dssp             HHHHTEEEEEEEEEEEBSS-CCEEEEEETTEECCSSEEEEECCCCTTTCCEEEE--EEEEEEHHHHTTCC-EEEEEEECT
T ss_pred             hccCCceEEEEEEcccCCC-ceEEEEEECCCCCCCceeecccccccCCCcEEEE--EEEEEcHHHccCCC-cEEEEEeeC
Confidence            3469999999999875442 2578999999776431        1124455543  56999999999997 999999998


Q ss_pred             cCCe
Q psy5694         103 ITGE  106 (129)
Q Consensus       103 ltge  106 (129)
                      ...+
T Consensus       223 ~~~~  226 (237)
T 3sob_L          223 GLSS  226 (237)
T ss_dssp             TCSS
T ss_pred             CCCC
Confidence            6433

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=98.59  E-value=1.2e-07  Score=72.26  Aligned_cols=89  Identities=13%  Similarity=0.173  Sum_probs=58.5

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eeee---ccc-------CCCceEEEcc-----CccEEEeccCCC
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIY---LNT-------DTGGKYVVLS-----SGDLYVFNATPN   89 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i~---~~~-------~~~~ry~vlp-----sG~L~I~nv~~~   89 (129)
                      .|.+|++|.|.|.+.+.+.. .+.+.|++++     ..|.   ...       ...+|+.+..     ++.|.|.+++.+
T Consensus       149 ~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~  227 (264)
T 2gjj_A          149 VVKTGASVKISCKASGYSFT-GYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSE  227 (264)
T ss_dssp             EECTTCCEEEEEEEESSCGG-GSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EEcCCCcEEEEEEEeCCccC-CeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcc
Confidence            68899999999999766531 2568999863     1221   100       1146776642     467999999999


Q ss_pred             CCCcceEEEeecc--cCCeEEecccceEEEEecC
Q psy5694          90 DGYKSYRCRTVNK--ITGESQASVFQTRLSITGK  121 (129)
Q Consensus        90 D~g~~Y~C~a~N~--ltge~k~S~~~~~L~V~ep  121 (129)
                      |+| .|.|.+.|.  +.+...-.. ..+|+|..+
T Consensus       228 DsG-~Y~C~a~n~~~~~~~~~fg~-gt~l~v~~~  259 (264)
T 2gjj_A          228 DSA-DYYCVRSGNYEEYAMDYWGQ-GTSVTVSSH  259 (264)
T ss_dssp             GCE-EEEEEEECSGGGCSCCCBCC-CEEEEEC--
T ss_pred             cCE-EEEEEEecCCCCcceEEECC-CEEEEEecc
Confidence            997 999999995  112111232 458888754

>1u9k_A Triggering receptor expressed on myeloid cells 1; activating receptors, TREM-1, innate immunity, immune system receptor, immune system; 1.76A {Mus musculus} SCOP: b.1.1.1

Probab=98.59  E-value=1.3e-07  Score=64.06  Aligned_cols=91  Identities=14%  Similarity=0.202  Sum_probs=58.7

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-eccc-C-----C-CceEEEcc---Cc--cEEEecc
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLNT-D-----T-GGKYVVLS---SG--DLYVFNA   86 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~~-~-----~-~~ry~vlp---sG--~L~I~nv   86 (129)
                      +... .+.+|.+|.|.|.+.....+ ...+.|.+..     ..| .... .     . .+||.+..   ++  .|.|.++
T Consensus         6 p~~v-~~~~G~~vtL~C~~~~~~~~-~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~   83 (114)
T 1u9k_A            6 EERY-DLVEGQTLTVKCPFNIMKYA-NSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDL   83 (114)
T ss_dssp             CEEE-EECTTCCEEEEEECCHHHHT-TSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSC
T ss_pred             CccE-EEeCCCcEEEEeEecCcccC-CceEEEEEeCCCCCCEEEEEEcCCCCccccccCCcEEEEecCcCCEEEEEECCC
Confidence            3444 88999999999998643211 1368998842     122 2110 0     1 37888742   22  5999999


Q ss_pred             CCCCCCcceEEEeecccCCeEEecccceEEEEe
Q psy5694          87 TPNDGYKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        87 ~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      +.+|+| .|.|.+.+.......... ..+|+|+
T Consensus        84 ~~~Dsg-~Y~C~~~~~~~~~~~~~~-~i~L~V~  114 (114)
T 1u9k_A           84 QVTDSG-LYRCVIYHPPNDPVVLFH-PVRLVVT  114 (114)
T ss_dssp             CGGGCE-EEEEEEECTTSCCEECSC-CEEEEEC
T ss_pred             ChHHCE-EEEEEEecCCCCceeeec-eEEEEEC
Confidence            999997 999999986522322333 6677774

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=98.59  E-value=5.3e-09  Score=88.57  Aligned_cols=81  Identities=12%  Similarity=0.194  Sum_probs=0.0

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEe
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQA  109 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~  109 (129)
                      .+..|+++.|.|.+.+.|+   +.++|.+|+..|.      .++.+..++.|.|.+++.+|+| .|+|.|.|.. |....
T Consensus       341 ~v~~G~~v~l~C~~~~~p~---~~v~W~~~g~~l~------~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a~n~~-g~~~~  409 (772)
T 3v2a_R          341 EATVGERVRIPAKYLGYPP---PEIKWYKNGIPLE------SNHTIKAGHVLTIMEVSERDTG-NYTVILTNPI-SKEKQ  409 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEcCCCcEEEEEEEeeeCC---CeEEEEECCEeCC------CCceEccceeEEEecCChhcCc-eEEEEEEECC-cCeEE
Confidence            6889999999999987664   4688999997763      2455556799999999999998 9999999998 44333


Q ss_pred             cccceEEEEecCC
Q psy5694         110 SVFQTRLSITGKL  122 (129)
Q Consensus       110 S~~~~~L~V~ep~  122 (129)
                      +. ...|.|..|+
T Consensus       410 s~-~~~l~v~~~P  421 (772)
T 3v2a_R          410 SH-VVSLVVYVPP  421 (772)
T ss_dssp             -------------
T ss_pred             EE-EEEEEEecCC
Confidence            43 5566666544

>2yc1_A Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_A 1dql_H 3cfi_C

Probab=98.59  E-value=1.8e-07  Score=63.22  Aligned_cols=91  Identities=12%  Similarity=0.161  Sum_probs=58.8

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc---------cCCCceEEEccC-----ccEEE
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN---------TDTGGKYVVLSS-----GDLYV   83 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~---------~~~~~ry~vlps-----G~L~I   83 (129)
                      ++... .|.+|.+|.|.|.+.+.... ...+.|.+..     ..| ...         ....+||.+..+     ..|.|
T Consensus         6 qp~~~-~~~~G~~vtL~C~~~~~~~~-~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (117)
T 2yc1_A            6 ESGGG-LVQPGGSLRLSCTGSGFTFD-NYAMHWLRQVPGEGLEWVSGISRSSGDIDYADSVKGRFTISRDDAKKTLSLQM   83 (117)
T ss_dssp             EECCE-EECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECGGGCCEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             cCCCE-EEcCCCeEEEEEEecCcccC-CCeEEEEEECCCCCcEEEEEEccCCCceeeCcccCCeEEEEEeCCCCEEEEEE
Confidence            34455 88999999999998643211 2458998743     112 111         012468887632     36999


Q ss_pred             eccCCCCCCcceEEEeecccCCeEEecccceEEEEe
Q psy5694          84 FNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        84 ~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      +|++.+|+| .|.|.+.+.. +...-.. ..+|.|+
T Consensus        84 ~~~~~~Dsg-~Y~C~~~~~~-~~~~fg~-GT~l~V~  116 (117)
T 2yc1_A           84 NSLRAEDTA-VYYCARGGVG-SFDTWGQ-GTMVTVS  116 (117)
T ss_dssp             CSCCGGGCE-EEEEEEEETT-EEEEECC-CEEEEEC
T ss_pred             CCCCHHHCE-EEEEEEEeCC-CceEECC-CEEEEEc
Confidence            999999997 9999998752 2322232 5577764

>2wzp_D Camelid VHH5; baseplate, viral protein; 2.60A {Lama glama} PDB: 2bse_D

Probab=98.59  E-value=3.6e-07  Score=62.48  Aligned_cols=75  Identities=19%  Similarity=0.255  Sum_probs=52.3

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc---------cCCCceEEEcc-----CccEEEe
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN---------TDTGGKYVVLS-----SGDLYVF   84 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~---------~~~~~ry~vlp-----sG~L~I~   84 (129)
                      +... .|.+|.+|.|.|.+.+.... ...+.|.+..     ..| ...         ....+||.+..     +..|.|+
T Consensus         7 p~~~-~~~~G~~vtL~C~~~~~~~~-~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (123)
T 2wzp_D            7 SGGG-LVQAGGSLRLSCTASRRTGS-NWCMGWFRQLAGKEPELVVALNFDYDMTYYADSVKGRFTVSRDSGKNTVYLQMN   84 (123)
T ss_dssp             EECE-EEETTCCEEEEEEESSCCSS-SEEEEEEECCSSSSCEEEEEEETTTTEEEECGGGTTTEEEEEETTEEEEEEEEC
T ss_pred             CCCE-EEcCCCcEEEEEEecCCCcc-CcEEEEEEECCCCCCEEEEEEEcCCCceecCcccCCCEEEEEeCCCCEEEEEEC
Confidence            4445 88999999999998643222 2568998843     112 111         01246888763     2369999


Q ss_pred             ccCCCCCCcceEEEeecc
Q psy5694          85 NATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        85 nv~~~D~g~~Y~C~a~N~  102 (129)
                      |++.+|+| .|.|.+.+.
T Consensus        85 ~~~~~Dsg-~Y~C~~~~~  101 (123)
T 2wzp_D           85 SLKPEDTA-IYYCAARSG  101 (123)
T ss_dssp             SCCGGGCE-EEEEEEEES
T ss_pred             CCCHHHCE-EEEEEEecC
Confidence            99999997 999999875

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=98.59  E-value=4.3e-08  Score=71.66  Aligned_cols=69  Identities=13%  Similarity=0.228  Sum_probs=50.5

Q ss_pred             EEeCCeEEEEeeCCCC-CCCcee-EeEEeecceeeecc----cCCCceEEEccCccEEEeccCCCCCCcceEEEeecccC
Q psy5694          31 VILGNTAVLRCQIPSY-MSEYII-VTSWIQDDVNIYLN----TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT  104 (129)
Q Consensus        31 V~~GntAvL~C~vp~~-~~~~v~-v~sW~~d~~~i~~~----~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~lt  104 (129)
                      +..|+.+.|.|.+.++ |+   + .++|.+++..|...    ...++.|.+  ++.|.|.+++++| | .|+|.|.|..+
T Consensus       139 ~~~g~~v~L~C~~~g~~P~---p~~v~W~~~g~~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~d-g-~y~C~a~n~~~  211 (222)
T 1q9r_B          139 AQTNSMVTLGCLVKGYFPE---PVTVTWNSGSLSSGVHTFPAVLQSDLYTL--SSSVTVPSSTWPS-E-TVTCNVAHPAS  211 (222)
T ss_dssp             CCCSSEEEEEEEEEEEBSS---CCEEEEGGGTBCTTEEEEEEEEETTEEEE--EEEEEEETTTTTT-S-CCEEEEEEGGG
T ss_pred             ccCCCcEEEEEEEccEECC---CCEEEEecCCeEcceEeccccccCCcEEE--EEEEEECchhcCC-C-eEEEEEEccCC
Confidence            4579999999999875 53   4 78999998654210    001234544  3579999999999 7 99999999984


Q ss_pred             Ce
Q psy5694         105 GE  106 (129)
Q Consensus       105 ge  106 (129)
                      ..
T Consensus       212 ~~  213 (222)
T 1q9r_B          212 ST  213 (222)
T ss_dssp             TE
T ss_pred             CC
Confidence            43

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=98.58  E-value=1.5e-07  Score=71.53  Aligned_cols=75  Identities=13%  Similarity=0.200  Sum_probs=51.9

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-e--cc-------cCCCceEEEccCc-----cEEEe
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-Y--LN-------TDTGGKYVVLSSG-----DLYVF   84 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~--~~-------~~~~~ry~vlpsG-----~L~I~   84 (129)
                      +... .|.+|.+|.|.|.+.+.... ...+.|++..     ..| .  ..       ....+||.+..++     .|.|+
T Consensus         6 ~~~v-~v~~G~~v~L~C~~s~~~~~-~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   83 (248)
T 3u2s_H            6 SGGG-VVQPGSSLRLSCAASGFDFS-RQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMN   83 (248)
T ss_dssp             ECCE-EECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             CCCE-EEeCCCCEEEEEEeccccCC-ccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEEC
Confidence            3444 88999999999998643222 2468998742     112 1  00       1224789886543     39999


Q ss_pred             ccCCCCCCcceEEEeecc
Q psy5694          85 NATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        85 nv~~~D~g~~Y~C~a~N~  102 (129)
                      +++.+|+| .|.|.+.|.
T Consensus        84 ~v~~~DsG-~Y~C~~~~~  100 (248)
T 3u2s_H           84 SLRVEDTA-TYFCVREAG  100 (248)
T ss_dssp             SCCGGGCE-EEEEEEEEE
T ss_pred             CCCHHHCE-EEEEEEeCC
Confidence            99999997 999999874

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=98.58  E-value=2.2e-08  Score=72.34  Aligned_cols=70  Identities=17%  Similarity=0.312  Sum_probs=49.3

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeeccc------CCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT------DTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~------~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      .++.|+.+.|.|.+.+..+.. ..++|++|+..|....      ..++.|.+.  ..|.|..++.+|.| .|+|.|.|..
T Consensus       132 ~~~~~~~v~L~C~~~g~~p~~-~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~--s~l~i~~~~~~d~g-~Y~C~a~n~~  207 (218)
T 3s96_B          132 EELKENKATLVCLISNFSPSG-VTVAWKANGTPITQGVDTSNPTKEGNKFMAS--SFLHLTSDQWRSHN-SFTCQVTHEG  207 (218)
T ss_dssp             HHHHTTEEEEEEEEEEEBSSC-CEEEEEETTEEC--------------CEEEE--EEEEEEHHHHHTCS-CEEEEEEETT
T ss_pred             ccccCCcEEEEEEECcccCCC-eEEEEEECCEECcCceecCcccccCCcEEEE--EEEEEeHHHccCCC-eEEEEEEeCC
Confidence            346789999999998743321 2689999997774310      114556553  56999999999997 9999999986

>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system; 2.35A {Mus musculus} PDB: 2e7l_C

Probab=98.57  E-value=7.2e-07  Score=61.47  Aligned_cols=89  Identities=22%  Similarity=0.271  Sum_probs=58.7

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eeee-ccc-------CCCceEEEcc----CccEEEeccC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIY-LNT-------DTGGKYVVLS----SGDLYVFNAT   87 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i~-~~~-------~~~~ry~vlp----sG~L~I~nv~   87 (129)
                      +... .|.+|.+|.|.|.... .   ...+.|++..     ..|. ...       ...+||.+..    +..|.|.|++
T Consensus         8 p~~v-~v~~G~~vtL~C~~~~-~---~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~   82 (121)
T 2oi9_C            8 PRNK-VAVTGEKVTLSCNQTN-N---HNNMYWYRQDTGHELRLIYYSYGAGSTEKGDIPDGYKASRPSQENFSLTLESAT   82 (121)
T ss_dssp             CSEE-EEETTCCEEEEEEESS-C---CSEEEEEEESSSSCCEEEEEESSTTCCEECSSCTTEEEECCSSSEEEEEESSCC
T ss_pred             CCeE-EecCCCcEEEEEEecC-C---CCeEEEEEECCCCCcEEEEEECCCceeeCCccCCCeEEEcCCCCEEEEEECCCC
Confidence            3444 8899999999999532 1   2468998743     2221 110       1246887752    2359999999


Q ss_pred             CCCCCcceEEEeecccCCeEEecccceEEEEecCC
Q psy5694          88 PNDGYKSYRCRTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        88 ~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      .+|+| .|.|.+.+.  +...-.+ ..+|.|.+..
T Consensus        83 ~~DsG-~Y~C~~~~~--~~~~fg~-GT~l~v~~~~  113 (121)
T 2oi9_C           83 PSQTS-VYFCASGGG--GTLYFGA-GTRLSVLSSA  113 (121)
T ss_dssp             GGGCE-EEEEEEESS--SCEEECC-CEEEEEEC--
T ss_pred             HHHCE-EEEEEEccC--CccEECC-CeEEEEechh
Confidence            99997 999999875  3433343 6688887653

>1kxv_C Camelid VHH domain CAB10; beta 8 alpha 8, beta barrel, hydrolase, immune system; 1.60A {Camelus dromedarius} SCOP: b.1.1.1

Probab=98.57  E-value=3.2e-07  Score=62.67  Aligned_cols=76  Identities=16%  Similarity=0.274  Sum_probs=52.6

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-eccc--------CCCceEEEccC-----ccEEEe
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLNT--------DTGGKYVVLSS-----GDLYVF   84 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~~--------~~~~ry~vlps-----G~L~I~   84 (129)
                      ++... .|.+|.+|.|.|.+.+.... ...+.|.+..     ..| ....        ...+||.+..+     ..|.|+
T Consensus         6 q~~~~-~~~~G~~vtL~C~~~~~~~~-~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   83 (121)
T 1kxv_C            6 ESGGG-TVPAGGSLRLSCAASGNTLC-TYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMD   83 (121)
T ss_dssp             EECCE-EECTTCCEEEEEEEESCTTC-CEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEEC
T ss_pred             cCCCE-EEcCCCcEEEEEEecCCCcC-ceEEEEEEeCCCCCCEEEEEEeCCCCeeeCcccCCcEEEEEECCCCEEEEEEC
Confidence            34444 88999999999998643222 2568998752     122 2110        12468887632     369999


Q ss_pred             ccCCCCCCcceEEEeecc
Q psy5694          85 NATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        85 nv~~~D~g~~Y~C~a~N~  102 (129)
                      |++.+|+| .|.|.+.+.
T Consensus        84 ~~~~~Dsg-~Y~C~~~~~  100 (121)
T 1kxv_C           84 SLKPDDTA-MYYCKPSLR  100 (121)
T ss_dssp             SCCGGGCE-EEEEEEEES
T ss_pred             CCCHHHCE-EEEEEEEec
Confidence            99999997 999999875

>1n4x_H Immunoglobulin heavy chain variable region; immune system; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy4_B

Probab=98.57  E-value=2.5e-07  Score=62.88  Aligned_cols=91  Identities=16%  Similarity=0.237  Sum_probs=57.9

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc---------cCCCceEEEcc---C--ccEEEe
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN---------TDTGGKYVVLS---S--GDLYVF   84 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~---------~~~~~ry~vlp---s--G~L~I~   84 (129)
                      +... .|.+|.+|.|.|.+.+.... ...+.|.+..     ..| ...         ....+||.+..   +  ..|.|+
T Consensus         7 p~~~-~~~~G~~vtL~C~~~~~~~~-~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (120)
T 1n4x_H            7 SGPE-LKKPGETVKISCKATNYAFT-DYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQIN   84 (120)
T ss_dssp             CCCE-EECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             CCCE-EEcCCCeEEEEEEecCcccC-CcEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEEC
Confidence            4444 88999999999998643211 2458998753     112 111         11246888762   2  369999


Q ss_pred             ccCCCCCCcceEEEeeccc--CCeEEecccceEEEEe
Q psy5694          85 NATPNDGYKSYRCRTVNKI--TGESQASVFQTRLSIT  119 (129)
Q Consensus        85 nv~~~D~g~~Y~C~a~N~l--tge~k~S~~~~~L~V~  119 (129)
                      |++.+|+| .|.|.+.+..  ++...-.. ..+|.|.
T Consensus        85 ~~~~~DsG-~Y~C~~~~~~~~~~~~~fg~-GT~l~V~  119 (120)
T 1n4x_H           85 NLKNEDTA-TYFCVRDRHDYGEIFTYWGQ-GTTVTVS  119 (120)
T ss_dssp             SCCGGGCE-EEEEEEESSSSSSCEEEECC-CEEEEEC
T ss_pred             CCCHHHCE-EEEEEEEccccccccceECC-CEEEEEe
Confidence            99999997 9999999751  12322222 4466664

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=98.57  E-value=3.1e-08  Score=71.59  Aligned_cols=69  Identities=19%  Similarity=0.357  Sum_probs=49.0

Q ss_pred             EEeCCeEEEEeeCCCCCCCceeEeEEeecceeeeccc-------CCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT-------DTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        31 V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~-------~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      +..|+.+.|.|.+.+.++. ...++|++|+..|.+..       +.++.|.+  ...|.|.+++++|.| .|.|+|.|..
T Consensus       127 ~~~g~~v~L~C~~~g~~p~-~~~v~W~k~g~~l~~~~~~~~~~~~~~g~~~~--~s~L~i~~~~~~d~g-~Y~C~a~n~~  202 (212)
T 1q0x_L          127 ELSTAKATLVCTITDFYPG-VVTVDWKVDGTPVTAGMETTQPSKQSNNKYMA--SSYLTLTARAWERHS-SYSCQVTHEG  202 (212)
T ss_dssp             HHTTTEEEEEEEEEEEBSS-CCEEEEEETTEEECTTEEECCCEECTTSCEEE--EEEEEEEHHHHTTCC-EEEEEEEETT
T ss_pred             HccCCcEEEEEEEEEEeCC-CeEEEEEECCEeCCCCeecCCceeCCCCCEEE--EEEEEEcHHHccCCC-cEEEEEEeCC
Confidence            3469999999999775432 13689999997774320       11122222  136999999999997 9999999974

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.57  E-value=3.9e-07  Score=67.89  Aligned_cols=91  Identities=13%  Similarity=0.103  Sum_probs=59.8

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc--------cCCCceEEEcc-Cc----cEEEec
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN--------TDTGGKYVVLS-SG----DLYVFN   85 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~--------~~~~~ry~vlp-sG----~L~I~n   85 (129)
                      +... .|.+|.+|.|.|.+.+...+ ...+.|++..     ..| +..        ....+||.+.. .+    .|.|++
T Consensus         8 p~~v-~~~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (230)
T 1ypz_F            8 EISI-SRPRDETAQISCKVFIESFR-SVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYS   85 (230)
T ss_dssp             CSEE-EEETTSCEEEEEEECCGGGG-GCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECS
T ss_pred             CCEE-EEeCCCcEEEEEEeeccccC-ccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECc
Confidence            4445 88999999999998754111 2468998753     112 111        01358998863 22    699999


Q ss_pred             cCCCCCCcceEEEeeccc-CCeEEecccceEEEEe
Q psy5694          86 ATPNDGYKSYRCRTVNKI-TGESQASVFQTRLSIT  119 (129)
Q Consensus        86 v~~~D~g~~Y~C~a~N~l-tge~k~S~~~~~L~V~  119 (129)
                      ++.+|+| .|.|.+.|.- ......+. ...|.|.
T Consensus        86 v~~~D~G-~Y~C~~~~~~~~~~~~~~~-~~~L~V~  118 (230)
T 1ypz_F           86 LEEEDEA-IYYCSYGEGSSGFHKVFAE-GTKLIVI  118 (230)
T ss_dssp             CCGGGCS-EEEEEECCTTTCCCCEECS-CEEEEEE
T ss_pred             CChhhCE-EEEEEEECCCCCcccccCC-CEEEEEe
Confidence            9999998 9999999851 01112223 4588886

>3cx5_J Heavy chain (VH) of FV-fragment; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Mus musculus} SCOP: b.1.1.1 PDB: 1kb9_J* 1kyo_J* 1p84_J* 2ibz_X* 1ezv_X* 3cxh_J*

Probab=98.56  E-value=1.8e-07  Score=64.72  Aligned_cols=96  Identities=14%  Similarity=0.147  Sum_probs=61.3

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc--------cCCCceEEEcc---C--ccEEEec
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN--------TDTGGKYVVLS---S--GDLYVFN   85 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~--------~~~~~ry~vlp---s--G~L~I~n   85 (129)
                      +... .|.+|.+|.|.|.+.+........+.|++..     ..| ...        ....+||.+..   +  ..|.|+|
T Consensus         7 p~~~-~~~~G~~vtL~C~~s~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (127)
T 3cx5_J            7 SGAG-LVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNS   85 (127)
T ss_dssp             EECS-EECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECS
T ss_pred             CCCE-EEcCCCCEEEEEEEeCcccCCCcEEEEEEECCCCCcEEEEEEeCCCCeeECcccCCcEEEEEeCCCCEEEEEECC
Confidence            4445 7889999999999864432111458998742     122 111        01246777652   2  3699999


Q ss_pred             cCCCCCCcceEEEeeccc----CCeEEecccceEEEEecCCC
Q psy5694          86 ATPNDGYKSYRCRTVNKI----TGESQASVFQTRLSITGKLK  123 (129)
Q Consensus        86 v~~~D~g~~Y~C~a~N~l----tge~k~S~~~~~L~V~ep~~  123 (129)
                      ++.+|.| .|.|.+.+..    .+...-.. ..+|+|.....
T Consensus        86 ~~~~Dsg-~Y~C~~~~~~~~~~~~~~~fg~-GT~L~V~~~~~  125 (127)
T 3cx5_J           86 VTTEDTA-TYYCARSEYYSVTGYAMDYWGQ-GTTVTVSSAWR  125 (127)
T ss_dssp             CCGGGCE-EEEEEEEEEETTTEEEEEEECC-CEEEEECSCCC
T ss_pred             CCHHHCE-EEEEEEEeCccccccccceeCC-CEEEEEecccc
Confidence            9999997 9999998752    12222233 56899886544

>1mfa_H IGG1-lambda Se155-4 FAB (heavy chain); immunoglobulin; HET: GLA MMA; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy2_B

Probab=98.56  E-value=2.1e-07  Score=63.37  Aligned_cols=92  Identities=13%  Similarity=0.133  Sum_probs=59.2

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc---------cCCCceEEEcc---C--ccEEEe
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN---------TDTGGKYVVLS---S--GDLYVF   84 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~---------~~~~~ry~vlp---s--G~L~I~   84 (129)
                      +... .|.+|.+|.|.|.+.+.... ...+.|.+..     ..| ...         ....+||.+..   +  ..|.|+
T Consensus         7 p~~~-~~~~G~~v~L~C~~~~~~~~-~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (120)
T 1mfa_H            7 SGTV-VARPGASVKMSCKASGYTFT-NYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELS   84 (120)
T ss_dssp             CCCE-EECTTCCEEEEEEEESSCGG-GSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             CCCE-EEeCCCCEEEEEEeeCcccc-ccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEeCCCCEEEEEEC
Confidence            4445 78899999999998643211 2468998742     122 111         11246888762   2  359999


Q ss_pred             ccCCCCCCcceEEEeecccCCeEEecccceEEEEec
Q psy5694          85 NATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        85 nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      |++.+|.| .|.|.+.+...+...-.. ..+|.|..
T Consensus        85 ~~~~~Dsg-~Y~C~~~~~~~~~~~fg~-GT~l~V~~  118 (120)
T 1mfa_H           85 SLTSEDSA-VYYCTRGGHGYYGDYWGQ-GASLTVSS  118 (120)
T ss_dssp             SCCGGGCE-EEEEEEEETTEEEEEECC-CEEEEEC-
T ss_pred             CCCHHHCE-EEEEEEecCCCceeEECC-CEEEEEEc
Confidence            99999997 999999875211222233 55888864

>2h32_A Immunoglobulin IOTA chain; beta sheets, V and C-type IG folds, immune system; 2.70A {Homo sapiens}

Probab=98.56  E-value=2.2e-07  Score=64.55  Aligned_cols=90  Identities=17%  Similarity=0.185  Sum_probs=56.9

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----ee-ee--ccc------CCCceEEEc--cC---ccEEEec
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VN-IY--LNT------DTGGKYVVL--SS---GDLYVFN   85 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~-i~--~~~------~~~~ry~vl--ps---G~L~I~n   85 (129)
                      +... .|.+|.+|.|.|.+......-...+.|++..     .. +.  ...      ...+||.+.  ++   ..|.|++
T Consensus         7 p~~v-~v~~G~~vtL~C~~s~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~   85 (126)
T 2h32_A            7 PPAM-SSALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISE   85 (126)
T ss_dssp             CSEE-EEETTCCEEEEEEECTTSCGGGCEEEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEEEGGGTEEEEEECS
T ss_pred             CCCE-EECCCCCEEEEEEecCCCccccceEEEEEECCCCCCEEEEEEECCCCEEeCCCCCCCEEEEEeCCCCeEEEEECC
Confidence            4444 8899999999999865411112468998743     12 22  110      124688876  32   3599999


Q ss_pred             cCCCCCCcceEEEeecccCCeEEecccceEEEEec
Q psy5694          86 ATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        86 v~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      ++.+|+| .|.|.+.+.. +..  +. ..+|+|.+
T Consensus        86 ~~~~DsG-~Y~C~~~~~~-~~~--~~-~t~l~v~~  115 (126)
T 2h32_A           86 LQPEDEA-MYYCAMGARS-SEK--EE-REREWEEE  115 (126)
T ss_dssp             CCGGGCE-EEEEEEECSC-CCC--CC-TTCC----
T ss_pred             CChhHCE-EEEEEEEcCC-CCc--ce-eEEEeecc
Confidence            9999997 9999999875 331  32 55788864

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=98.55  E-value=6.1e-08  Score=74.96  Aligned_cols=70  Identities=23%  Similarity=0.401  Sum_probs=50.8

Q ss_pred             EeCCeEEEEeeCCCCCCCceeEeEEeecceeeeccc--------CCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT--------DTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~--------~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      +.|+.+.|.|.+.++++.. ..++|++|+..|....        ..++.|.+  .+.|.|.+++++|+| .|.|.|.|..
T Consensus       232 ~~g~~~~l~C~~~g~~p~~-~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~--~s~L~i~~~~~~d~g-~Y~C~a~n~~  307 (323)
T 2wqr_A          232 GSRDKRTLACLIQNFMPED-ISVQWLHNEVQLPDARHSTTQPRKTKGSGFFV--FSRLEVTRAEWEQKD-EFICRAVHEA  307 (323)
T ss_dssp             TCTTEEEEEEEEEEEBSSC-CEEEEEETTEECCGGGEEECCCEECSSSSEEE--EEEEEEEHHHHHHCC-CEEEEEECTT
T ss_pred             hcCCcEEEEEEeeeeeCCC-cEEEEEECCEECCCCceeecCcccCCCCcEEE--EEEEEEChHHccCCC-EEEEEEEeCC
Confidence            3499999999997743321 3689999998774310        11234433  357999999999997 9999999987


Q ss_pred             CC
Q psy5694         104 TG  105 (129)
Q Consensus       104 tg  105 (129)
                      .+
T Consensus       308 ~~  309 (323)
T 2wqr_A          308 AS  309 (323)
T ss_dssp             ST
T ss_pred             CC
Confidence            54

>2p45_B Antibody CAB-RN05; seMet phasing, camelid single-domain antibody, VHH, RNAse A, yeast surface display, hydrolase/immune system complex; 1.10A {Camelus dromedarius} PDB: 2p46_B 2p47_B 2p48_B 2p44_B 2p49_B 2p42_B 2p43_B 1bzq_K 3qsk_B 2p4a_B 1op9_A 1sjx_A 3qxt_A* 3qxu_A 3eba_A

Probab=98.55  E-value=4.4e-07  Score=62.02  Aligned_cols=91  Identities=16%  Similarity=0.246  Sum_probs=58.0

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e---e-eecc---------cCCCceEEEccC-----ccEEEe
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---N-IYLN---------TDTGGKYVVLSS-----GDLYVF   84 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~---~-i~~~---------~~~~~ry~vlps-----G~L~I~   84 (129)
                      +... .|.+|.+|.|.|.+.+.... ...+.|++..  .   . +...         ....+||.+..+     ..|.|+
T Consensus         9 ~~~~-~~~~G~~vtL~C~~~~~~~~-~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   86 (123)
T 2p45_B            9 SGGG-LVQAGGSLRLSCAASGYAYT-YIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRMTISRDKGKNTVYLQMD   86 (123)
T ss_dssp             ECCE-EEETTCCEEEEEEEESCSSC-CSEEEEEEECTTSCCEEEEEEETTSCSCEECTTTBTTEEEECCTTSSEEEEEES
T ss_pred             cCCE-EEeCCCCEEEEEEecCccCc-CcEEEEEEECCCCCcEEEEEEecCCCceEeCcccCCeEEEEEeCCCCEEEEEEC
Confidence            3444 88999999999998643211 2468998743  1   1 2211         012468887632     359999


Q ss_pred             ccCCCCCCcceEEEeeccc---CCeEEecccceEEEEe
Q psy5694          85 NATPNDGYKSYRCRTVNKI---TGESQASVFQTRLSIT  119 (129)
Q Consensus        85 nv~~~D~g~~Y~C~a~N~l---tge~k~S~~~~~L~V~  119 (129)
                      |++.+|+| .|.|.+.+..   ++...-.. ..+|+|+
T Consensus        87 ~~~~~Dsg-~Y~C~~~~~~~~~~~~~~fg~-GT~l~V~  122 (123)
T 2p45_B           87 SLKPEDTA-TYYCAAGGYELRDRTYGQWGQ-GTQVTVS  122 (123)
T ss_dssp             SCCGGGCE-EEEEEESSCTTCGGGCCEECC-CEEEEEE
T ss_pred             CCCHHHCE-EEEEEEEecCCCccccceeCC-CEEEEec
Confidence            99999997 9999998741   12222222 4577764

>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system; 1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N

Probab=98.55  E-value=4.7e-07  Score=62.85  Aligned_cols=71  Identities=20%  Similarity=0.343  Sum_probs=51.2

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e---eeecccCCCceEEEc-----cCccEEEeccCCCCCCcc
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NIYLNTDTGGKYVVL-----SSGDLYVFNATPNDGYKS   94 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~---~i~~~~~~~~ry~vl-----psG~L~I~nv~~~D~g~~   94 (129)
                      +... .|.+|.+|.|.|.+.+...+ ...+.|++..  .   .+.   ..++||.+.     .+..|.|.|++.+|+| .
T Consensus         7 p~~v-~v~~G~~vtL~C~~s~~~~~-~~~v~Wyrq~~g~~~~~~~---~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG-~   80 (121)
T 2i24_N            7 PQRI-TKETGESLTINCVVRDSRCV-LSTGYWYRKPPGSRNEESI---SDGGRYVETVNRGSKSFSLRINDLTVKDSG-T   80 (121)
T ss_dssp             CSEE-EEETTCCEEEEEEECSCCCC-EEEEEEEEECTTCSCCEEE---CSBTTEEEEEETTTTEEEEEECSCCGGGCE-E
T ss_pred             CcEE-EEecCCcEEEEeEccCCCCC-CCEEEEEEeCCCCCceeeE---ecCCCeEEEecCCCCEEEEEECCCChhhCE-E
Confidence            4445 88999999999998654211 3568998854  1   121   235788763     2346999999999997 9


Q ss_pred             eEEEeec
Q psy5694          95 YRCRTVN  101 (129)
Q Consensus        95 Y~C~a~N  101 (129)
                      |.|.+..
T Consensus        81 Y~C~~~~   87 (121)
T 2i24_N           81 YRCKPES   87 (121)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEec
Confidence            9999975

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=98.54  E-value=8.4e-08  Score=69.15  Aligned_cols=70  Identities=17%  Similarity=0.270  Sum_probs=51.3

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc--------cCCCceEEEccCccEEEeccCCCCCCcceEEEeec
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN--------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVN  101 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~--------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N  101 (129)
                      .+..|+.+.|.|.+.+.+++ .+.++|++|+..|.+.        ...++.|.+.  ..|.|..++++|.| .|+|+|.|
T Consensus       123 ~~~~~~~v~l~C~~~g~~p~-~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~--s~l~i~~~~~~d~g-~YtC~v~n  198 (213)
T 3r06_A          123 EQLGTGSATLVCFVNNFYPK-DINVKWKVDGSEKRDGVLQSVTDQDSKDSTYSLS--STLSLTKADYERHN-LYTCEVTH  198 (213)
T ss_dssp             HHHTTTEEEEEEEEEEEBSS-CEEEEEEETTEEECTTEEEEECCCCTTTCCEEEE--EEEEEEHHHHHTCC-EEEEEEEE
T ss_pred             eecCCCCcEEEEEEeeecCC-ceEEEEEECCcccCCceEeccCceeCCCCcEEEE--EEEEeCHHHhccCC-eEEEEEEe
Confidence            34579999999999776542 2578999999777431        1123444443  46889999999997 99999999


Q ss_pred             cc
Q psy5694         102 KI  103 (129)
Q Consensus       102 ~l  103 (129)
                      ..
T Consensus       199 ~~  200 (213)
T 3r06_A          199 KT  200 (213)
T ss_dssp             TT
T ss_pred             cc
Confidence            85

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.54  E-value=6.6e-07  Score=67.82  Aligned_cols=92  Identities=18%  Similarity=0.200  Sum_probs=61.2

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eeee-cc----cCCCceEEEcc---C--ccEEEeccCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIY-LN----TDTGGKYVVLS---S--GDLYVFNATPN   89 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i~-~~----~~~~~ry~vlp---s--G~L~I~nv~~~   89 (129)
                      +... .|.+|.+|.|.|.+.+.... ...+.|++..     ..|. ..    ....+||.+..   +  ..|.|+|++.+
T Consensus         8 p~~v-~v~~G~~vtL~C~~s~~~~~-~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   85 (229)
T 1hxm_A            8 HQTV-PVSIGVPATLRCSMKGEAIG-NYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSER   85 (229)
T ss_dssp             CSEE-EEETTCCEEEEEEECSSCGG-GSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGG
T ss_pred             CCEE-EEcCCCCEEEEeEecCCccC-cceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCCHh
Confidence            4555 89999999999998743322 2468998753     2221 11    12358998863   2  26999999999


Q ss_pred             CCCcceEEEeeccc-----CCeEEecccceEEEEec
Q psy5694          90 DGYKSYRCRTVNKI-----TGESQASVFQTRLSITG  120 (129)
Q Consensus        90 D~g~~Y~C~a~N~l-----tge~k~S~~~~~L~V~e  120 (129)
                      |+| .|.|.+.+..     ++...... ..+|.|..
T Consensus        86 Dsg-~Y~C~~~~~~~~~~~~~~~~~g~-gt~L~V~~  119 (229)
T 1hxm_A           86 DEG-SYYCACDTLGMGGEYTDKLIFGK-GTRVTVEP  119 (229)
T ss_dssp             GCE-EEEEEEECCCCSSSCCCCCEEBC-CEEEEEEC
T ss_pred             HCe-EEEEEEecCCCcccccchhhcCc-cEEEEEec
Confidence            997 9999998762     12222222 45888875

>1yc7_A Anti-VSG immunoglobulin heavy chain variable domain caban33; antibody, camel antibody, immune system; 1.60A {Camelus dromedarius} PDB: 1yc8_A 1yzz_A

Probab=98.54  E-value=6.8e-07  Score=61.96  Aligned_cols=93  Identities=13%  Similarity=0.194  Sum_probs=59.9

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc--------cCCCceEEEcc-----CccEEEec
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN--------TDTGGKYVVLS-----SGDLYVFN   85 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~--------~~~~~ry~vlp-----sG~L~I~n   85 (129)
                      +... .|.+|.+|.|.|.+.+.... ...+.|.+..     ..| ...        ....+||.+..     +..|.|.+
T Consensus         7 p~~~-~~~~G~~vtL~C~~s~~~~~-~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~   84 (124)
T 1yc7_A            7 SGGG-SVQAGGSLRLSCAVSGSTYS-PCTTGWYRQAPGKEREWVSSISSPGTIYYQDSVKGRFTISRDNAKNTVYLQMNS   84 (124)
T ss_dssp             ECCE-EECTTCCEEEEEEEESCCSS-CEEEEEEEECTTSCEEEEEEECSTTCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCE-EEecCCCEEEEEEEeCCCcC-CCEEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECC
Confidence            4444 88999999999998643222 2568998743     122 111        01246888763     23599999


Q ss_pred             cCCCCCCcceEEEeecc-cCCeEEecccceEEEEecC
Q psy5694          86 ATPNDGYKSYRCRTVNK-ITGESQASVFQTRLSITGK  121 (129)
Q Consensus        86 v~~~D~g~~Y~C~a~N~-ltge~k~S~~~~~L~V~ep  121 (129)
                      ++.+|+| .|.|.+.+. .++...-.+ ..+|+|+.+
T Consensus        85 ~~~~Dsg-~Y~C~~~~~~~~~~~~fG~-GT~l~v~~~  119 (124)
T 1yc7_A           85 LQREDTG-MYYCQIQCGVRSIREYWGQ-GTQVTVSSH  119 (124)
T ss_dssp             CCGGGCE-EEEEEEEECSSSCEEEECC-CEEEEEC--
T ss_pred             CCHHHCE-EEEEEEEeCCCcccceECC-CEEEEEecc
Confidence            9999997 999999875 123333333 568888754

>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, cell membrane, glycoprotein; 1.80A {Homo sapiens} PDB: 3rp1_A

Probab=98.53  E-value=2e-07  Score=62.98  Aligned_cols=83  Identities=16%  Similarity=0.152  Sum_probs=56.8

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEc---cCccEEEeccCCCCCCcceEEEeecccCCe
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL---SSGDLYVFNATPNDGYKSYRCRTVNKITGE  106 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl---psG~L~I~nv~~~D~g~~Y~C~a~N~ltge  106 (129)
                      .|..|+.++|.|+.+...    ....|.||+..+...  ...+....   ...++.|..|+.+|+| .|+|...|.. +-
T Consensus        19 vv~~G~~VtL~C~~~~~~----~~f~l~k~g~~~~~~--~~~~~~~~~~~~~~~f~i~~vt~~~aG-~Y~C~~~~~~-~~   90 (106)
T 3kgr_A           19 VIPLGSHVTFVCRGPVGV----QTFRLERESRSTYND--TEDVSQASPSESEARFRIDSVSEGNAG-PYRCIYYKPP-KW   90 (106)
T ss_dssp             EEETTCCEEEEEEECTTC----CEEEEEEGGGTEEEE--ECCCEEEETTEEEEEEEESSCCGGGCE-EEEEEEEETT-EE
T ss_pred             ccCCCCeEEEEEEccCCC----cEEEEEECCCccccc--cccccccCCCCcceEEEecCCCcCCCc-eEEEEeeCCC-cc
Confidence            567899999999986433    347899998443210  00111111   1357999999999997 9999999853 33


Q ss_pred             EEecccceEEEEecC
Q psy5694         107 SQASVFQTRLSITGK  121 (129)
Q Consensus       107 ~k~S~~~~~L~V~ep  121 (129)
                      ...|+ +..|.|++.
T Consensus        91 S~~Sd-pl~L~Vtg~  104 (106)
T 3kgr_A           91 SEQSD-YLELLVKEA  104 (106)
T ss_dssp             CCCCC-CEEEEEECC
T ss_pred             cCCCC-CEEEEEeCC
Confidence            34466 889999864

>1mqk_H Antibody 7E2 FV fragment, heavy chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_C 3ehb_C* 3hb3_C* 1qle_H* 2otu_B 2gsg_B 2otw_B 1qfw_I* 3ab0_B 1i8k_B 1i8i_B 1vhp_A 1bfv_H* 1cfv_H* 2bfv_H* 1dsf_H

Probab=98.53  E-value=5.4e-07  Score=62.25  Aligned_cols=96  Identities=13%  Similarity=0.184  Sum_probs=62.6

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-e--cc-------cCCCceEEEcc-----CccEEEe
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-Y--LN-------TDTGGKYVVLS-----SGDLYVF   84 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~--~~-------~~~~~ry~vlp-----sG~L~I~   84 (129)
                      +... .|.+|.+|.|.|.+.+.... ...+.|.+..     ..| .  ..       ....+||.+..     +-.|.|+
T Consensus         7 ~~~~-~~~~G~~vtL~C~~s~~~~~-~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (127)
T 1mqk_H            7 SGGD-LVQPGGSLKLSCAASGFTFS-SYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMS   84 (127)
T ss_dssp             ECCC-EECTTCCEEEEEEEESSCGG-GSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEEC
T ss_pred             CCCE-EEcCCCCEEEEEEeCCCccC-CcEEEEEEECCCCCCEEEEEEecCCCcEEcCcccCCCEEEEEeCCCCEEEEEEC
Confidence            3444 88999999999998643211 2358998743     122 1  10       11246888753     2359999


Q ss_pred             ccCCCCCCcceEEEeecccCCeEEecccceEEEEecCCCC
Q psy5694          85 NATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGKLKS  124 (129)
Q Consensus        85 nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~~~  124 (129)
                      |++.+|.| .|.|.+.+...+...-.. ..+|.|.+...+
T Consensus        85 ~~~~~Dsg-~Y~C~~~~~~~~~~~fg~-gT~L~V~~~~~~  122 (127)
T 1mqk_H           85 SLKSEDTA-MYYCVRHEYYYAMDYWGQ-GTTVTVSSAWRH  122 (127)
T ss_dssp             SCCGGGCE-EEEEEEEETTTEEEEECC-CEEEEECSSCCC
T ss_pred             CCCHHHCE-EEEEEEecCCcCcceECC-CEEEEEeCCccc
Confidence            99999997 999999875212323333 669999876543

>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist peptide T-cell vaccines, transmembrane, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A

Probab=98.52  E-value=7.7e-07  Score=66.21  Aligned_cols=91  Identities=19%  Similarity=0.277  Sum_probs=59.8

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e----eeeccc----CCCceEEEcc-----CccEEEeccCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V----NIYLNT----DTGGKYVVLS-----SGDLYVFNATPN   89 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~----~i~~~~----~~~~ry~vlp-----sG~L~I~nv~~~   89 (129)
                      +... .|.+|.+|.|.|.+.....   ..+.|++..  .    .+....    ...+||.+..     +..|.|++++.+
T Consensus         7 p~~v-~v~~G~~v~L~C~~s~~~~---~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   82 (203)
T 2bnu_A            7 PAAL-SVPEGENLVLNCSFTDSAI---YNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPG   82 (203)
T ss_dssp             CSEE-EEETTCCEEEEEEESCCCE---EEEEEEEECTTSCEEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred             CCEE-EEeCCCCEEEEEEECCCCc---ceEEEEEeCCCCCcEEEEEECCCCccccCCCeEEEEcCCCCEEEEEEeeCCcc
Confidence            4444 8999999999999865432   468998743  1    222111    1257888752     236999999999


Q ss_pred             CCCcceEEEeeccc--CCeEEecccceEEEEecC
Q psy5694          90 DGYKSYRCRTVNKI--TGESQASVFQTRLSITGK  121 (129)
Q Consensus        90 D~g~~Y~C~a~N~l--tge~k~S~~~~~L~V~ep  121 (129)
                      |+| .|.|.+.+..  .+...... ..+|.|...
T Consensus        83 Dsg-~Y~C~~~~~~~~~~~~~~g~-gt~L~V~~~  114 (203)
T 2bnu_A           83 DSA-TYLCAVRPTSGGSYIPTFGR-GTSLIVHPY  114 (203)
T ss_dssp             GCE-EEEEEEEECSSSTTCCEECC-CEEEEEECC
T ss_pred             cCe-EEEEEEEcCcCcceeeeeCC-CEEEEEeCC
Confidence            997 9999998742  12212222 457888753

>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}

Probab=98.52  E-value=3.7e-07  Score=65.47  Aligned_cols=84  Identities=19%  Similarity=0.277  Sum_probs=58.2

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc----cCCCceEEEcc---CccEEEeccCCCCCCcceE
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN----TDTGGKYVVLS---SGDLYVFNATPNDGYKSYR   96 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~----~~~~~ry~vlp---sG~L~I~nv~~~D~g~~Y~   96 (129)
                      .|.+|.+|.|.|.+.....   ..+.|.+..     ..| +..    ....+||.+..   +..|.|+|++.+|+| .|.
T Consensus        11 ~v~~G~~vtL~C~~s~~~~---~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~sL~I~~l~~~DsG-~Y~   86 (143)
T 3u6r_L           11 SLSPGERATLSCRASQSVN---KYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISNLEPEDFA-VYY   86 (143)
T ss_dssp             EECTTCCEEEEEEESSCCT---TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCE-EEE
T ss_pred             EEeCCCCEEEEEEECCCCc---eeeEEEEECCCCCCEEEEEeCCccCCCccCcEeEEccCCEEEEEEccCcccCCE-EEE
Confidence            7889999999999876542   358998842     222 211    11357887753   335999999999997 999


Q ss_pred             EEeecccCCeEEecccceEEEEecC
Q psy5694          97 CRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        97 C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      |.+.+..   ..... ..+|+|..+
T Consensus        87 C~~~~~~---~~fg~-gt~L~V~~~  107 (143)
T 3u6r_L           87 CQQRSDW---VTFGG-GTKVEIKAA  107 (143)
T ss_dssp             EEECSSB---CEECC-CEEEEEC--
T ss_pred             EEEecCC---CEECC-CEEEEECCC
Confidence            9998764   22333 568898754

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.52  E-value=5.6e-08  Score=71.07  Aligned_cols=68  Identities=21%  Similarity=0.390  Sum_probs=49.2

Q ss_pred             EeCCeEEEEeeCCCCCCCceeEeEEeecceeeeccc-------CCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT-------DTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~-------~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      ++|+++.|.|.+.+.++. .+.++|.+|+..|....       +.++.|.+  .+.|.|.+++++|+| .|+|+|.|..
T Consensus       148 ~~g~~v~L~C~~~g~~p~-~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~d~G-~Y~C~a~n~~  222 (234)
T 2j6e_L          148 LQANKATLVCLISDFFPG-AVTVAWKADGAPVKAGVETTKPSKQSNNKYAA--SSYLSLTPEQWKSHR-SYSCQVTHEG  222 (234)
T ss_dssp             HTTSCCCEEECCCBCSSC-CCEEEEEETTEECCSSEEECCCCCCTTSCCBC--CEEECCCGGGTTTSC-CEEEEEEBTT
T ss_pred             hcCCceEEEEEEEEEcCC-ceEEEEEECCEECCCCccccCceECCCCCEEE--EEEEEECHHHcCCCC-eEEEEEEeCC
Confidence            468999999999876433 14689999997774310       01222211  246999999999997 9999999985

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.52  E-value=2.5e-08  Score=80.16  Aligned_cols=71  Identities=13%  Similarity=0.269  Sum_probs=51.6

Q ss_pred             EEeCCeEEEEeeCCCCC--CCceeEeEEeecceeeecccC------CCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          31 VILGNTAVLRCQIPSYM--SEYIIVTSWIQDDVNIYLNTD------TGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        31 V~~GntAvL~C~vp~~~--~~~v~v~sW~~d~~~i~~~~~------~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      +..|++|.|.|.+.+.+  +. .+.++|++++..|.....      .+++|.  .++.|.|.+++.+|+| .|+|.|.|.
T Consensus       252 ~~~G~~~~L~C~~~g~~~~p~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~v~~~d~G-~Y~C~a~n~  327 (444)
T 1igt_B          252 LMISLSPIVTCVVVDVSEDDP-DVQISWFVNNVEVHTAQTQTHREDYNSTLR--VVSALPIQHQDWMSGK-EFKCKVNNK  327 (444)
T ss_dssp             HCTTSCCEEEEEEEEECTTCC-CCEEEEEETTEECSSTTCBCCEEECSSSEE--EEEEEECCHHHHHTTC-EEEEEEECT
T ss_pred             eecCCCcEEEEEEeecccCCC-CeEEEEEECCccccCcccccceeCCCCcEE--EEEEEEEcHHHhccCC-cEEEEEEcC
Confidence            47899999999998763  11 256899999976642200      112232  2458999999999997 999999998


Q ss_pred             cCC
Q psy5694         103 ITG  105 (129)
Q Consensus       103 ltg  105 (129)
                      .+.
T Consensus       328 ~~~  330 (444)
T 1igt_B          328 DLP  330 (444)
T ss_dssp             TCS
T ss_pred             CCC
Confidence            743

>2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A

Probab=98.51  E-value=3.4e-07  Score=61.91  Aligned_cols=75  Identities=25%  Similarity=0.360  Sum_probs=51.7

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-eccc--------CCCceEEEccC---ccEEEeccC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLNT--------DTGGKYVVLSS---GDLYVFNAT   87 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~~--------~~~~ry~vlps---G~L~I~nv~   87 (129)
                      +... .|.+|.+|.|.|.+.....  ...+.|.+..     ..| ....        ...+||.+..+   ..|.|+|++
T Consensus         8 p~~~-~~~~G~~v~L~C~~~~~~~--~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~~~   84 (115)
T 2otu_A            8 SSSA-SFSLGASAKLTCTLSSQHS--TYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQ   84 (115)
T ss_dssp             CCCE-ECCTTCCEEEEEEECGGGT--TCCEEEEEECTTSCCEEEEEECTTSCEEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             CCCE-EECCCCCEEEEEEecCCCC--CeEEEEEEeCCCCCceEEEEEecCCceecCcccCCCEEEEccCCEEEEEECCCC
Confidence            4444 7889999999999865321  2458998742     122 2111        11468887643   359999999


Q ss_pred             CCCCCcceEEEeeccc
Q psy5694          88 PNDGYKSYRCRTVNKI  103 (129)
Q Consensus        88 ~~D~g~~Y~C~a~N~l  103 (129)
                      .+|+| .|.|.+.+..
T Consensus        85 ~~Dsg-~Y~C~~~~~~   99 (115)
T 2otu_A           85 PEDEA-IYICGVGDTI   99 (115)
T ss_dssp             GGGCE-EEEEEEEECC
T ss_pred             hhHCE-EEEEEEecCC
Confidence            99997 9999998753

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=98.51  E-value=2.3e-08  Score=74.83  Aligned_cols=75  Identities=15%  Similarity=0.256  Sum_probs=52.8

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCC-CCCceeEeEEeecceee-ecc-----cCCCceEEEccCccEEEeccCCCCCCcceE
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSY-MSEYIIVTSWIQDDVNI-YLN-----TDTGGKYVVLSSGDLYVFNATPNDGYKSYR   96 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~~~i-~~~-----~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~   96 (129)
                      .+... .+..|+++.|.|.+.++ |.+. ..++|++|+..+ ...     ...+++|.  .+..|.|.+++++|+| .|+
T Consensus        19 ~p~~~-~v~~G~~v~L~C~~~g~~P~~p-~~v~W~~~g~~~~~~~~~~~~~~~~g~~~--~~s~L~I~~~~~~D~g-~Y~   93 (231)
T 2w59_A           19 PPSPG-ELYISLDAKLRCLVVNLPSDSS-LSVTWTREKSGNLRPDPMVLQEHFNGTYS--ASSAVPVSTQDWLSGE-RFT   93 (231)
T ss_dssp             CCCHH-HHHTSCCCEEEEEEEEESCCTT-CEEEEECSSSSCCCCCCCEEEECTTSCEE--EEEEEECCHHHHHTTC-CEE
T ss_pred             CcChh-hcccCCceEEEEEEeCccCCCC-eEEEEEcCCeeccccccccceECCCCcEE--EEEEEEecchhccCCC-EEE
Confidence            34444 66799999999999764 4221 268999998555 211     01234443  2346999999999997 999


Q ss_pred             EEeeccc
Q psy5694          97 CRTVNKI  103 (129)
Q Consensus        97 C~a~N~l  103 (129)
                      |.+.|..
T Consensus        94 C~~~~~~  100 (231)
T 2w59_A           94 CTVQHEE  100 (231)
T ss_dssp             EEEECTT
T ss_pred             EEEEcCC
Confidence            9999976

>3b9v_A Heavy chain variable domain; antibody engineering, phage display, immune system; 1.80A {Homo sapiens} PDB: 1fvc_B 3p9w_B 1fgv_H 2vh5_H*

Probab=98.51  E-value=3.5e-07  Score=62.19  Aligned_cols=75  Identities=13%  Similarity=0.240  Sum_probs=51.9

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc---------cCCCceEEEcc-----CccEEEe
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN---------TDTGGKYVVLS-----SGDLYVF   84 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~---------~~~~~ry~vlp-----sG~L~I~   84 (129)
                      +... .|.+|.+|.|.|.+.+.... ...+.|++..     ..| ...         ....+||.+..     +..|.|+
T Consensus         7 p~~~-~~~~G~~vtL~C~~~~~~~~-~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (120)
T 3b9v_A            7 SGGG-LVQPGGSLRLSCAASGFNIK-DTYIGWVRRAPGKGEEWVASIYPTNGYTRYADSVKGRFTISADTSKNTAYLQMN   84 (120)
T ss_dssp             ECCE-EECTTCCEEEEEEEESSCGG-GSEEEEEEECTTCCEEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             CCCE-EEeCCccEEEEEEeeCcccc-ccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCeEEEEEcCCCCEEEEEEC
Confidence            4445 88999999999998643211 2468998743     112 111         01246888763     2369999


Q ss_pred             ccCCCCCCcceEEEeecc
Q psy5694          85 NATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        85 nv~~~D~g~~Y~C~a~N~  102 (129)
                      |++.+|+| .|.|.+.+.
T Consensus        85 ~~~~~Dsg-~Y~C~~~~~  101 (120)
T 3b9v_A           85 SLRAEDTA-VYYCARWGG  101 (120)
T ss_dssp             SCCGGGCE-EEEEEEECT
T ss_pred             CCCHHHCE-EEEEEEEcC
Confidence            99999997 999999875

>1j05_H T84.66 antibody, anti-CEA MAB T84.66, heavy chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1dvf_D 1mvu_B 1ap2_B 2ap2_B

Probab=98.51  E-value=3.5e-07  Score=62.37  Aligned_cols=75  Identities=19%  Similarity=0.282  Sum_probs=51.7

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc---------cCCCceEEEcc-----CccEEEe
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN---------TDTGGKYVVLS-----SGDLYVF   84 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~---------~~~~~ry~vlp-----sG~L~I~   84 (129)
                      +... .|.+|.+|.|.|.+.+.... ...+.|.+..     ..| ...         ....+||.+..     +..|.|+
T Consensus         7 p~~~-~~~~G~~vtL~C~~~~~~~~-~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (121)
T 1j05_H            7 SGAE-LVEPGASVKLSCTASGFNIK-DTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLT   84 (121)
T ss_dssp             CCCE-EECTTCCEEEEEEEESSCGG-GSEEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEEGGGTEEEEEEC
T ss_pred             CCCE-EEeCCCcEEEEEEecCcccC-CcEEEEEEECCCCCcEEEEEEecCCCceeeCcccCCcEEEEEcCCCCEEEEEEC
Confidence            4445 88899999999998643221 2468998743     112 111         01236888752     2369999


Q ss_pred             ccCCCCCCcceEEEeecc
Q psy5694          85 NATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        85 nv~~~D~g~~Y~C~a~N~  102 (129)
                      |++.+|+| .|.|.+.+.
T Consensus        85 ~~~~~Dsg-~Y~C~~~~~  101 (121)
T 1j05_H           85 SLTSEDTA-VYYCAPFGY  101 (121)
T ss_dssp             SCCGGGCE-EEEEEEEBT
T ss_pred             CCCHHHCE-EEEEEEEcC
Confidence            99999997 999999876

>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens}

Probab=98.50  E-value=6.2e-07  Score=62.16  Aligned_cols=95  Identities=12%  Similarity=0.164  Sum_probs=61.6

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc------eeeeccc----CCCceEEEcc---Cc--cEEEec
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD------VNIYLNT----DTGGKYVVLS---SG--DLYVFN   85 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~------~~i~~~~----~~~~ry~vlp---sG--~L~I~n   85 (129)
                      |.++....+.+.+|.+|.|.|........  ..+.|.+..      ..|....    ...+||.+..   .|  .|.|+|
T Consensus         4 ~~v~~p~~v~~~~G~svtL~C~~s~~~~~--~~~~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   81 (124)
T 2nms_A            4 PQITGPTTVNGLERGSLTVQCVYRSGWET--YLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRTFTVTMED   81 (124)
T ss_dssp             CSEECCSEEEEETTCCEEEEEEECTTCTT--SEEEEEESSSSTTCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECS
T ss_pred             eEeecccEEEEeCCCCEEEEeEEeCCccc--ccEEEEeCCCCCCceEEEEcCCcccceeCCCEEEEEcCcCCEEEEEEeC
Confidence            33333334488999999999998654433  258998853      1222211    1246887742   23  599999


Q ss_pred             cCCCCCCcceEEEeecccCCeEEecccceEEEEecCC
Q psy5694          86 ATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        86 v~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      ++.+|+| .|.|...+.  +.. ... ...|.|..++
T Consensus        82 l~~~Dsg-~Y~C~~~~~--~~~-~~~-~v~L~V~~~~  113 (124)
T 2nms_A           82 LMKTDAD-TYWCGIEKT--GND-LGV-TVQVTIDPAP  113 (124)
T ss_dssp             CCGGGCE-EEEEEEEET--TEE-EEE-EEEEEEECCC
T ss_pred             CCHHHCE-EEEEEEEcC--CCC-ccE-EEEEEEeCCC
Confidence            9999997 999999876  332 222 4577777543

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=98.50  E-value=2e-07  Score=68.21  Aligned_cols=68  Identities=15%  Similarity=0.285  Sum_probs=51.6

Q ss_pred             EeCCeEEEEeeCCC-CCCCceeEeEEeecceeeecc-----c-CCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          32 ILGNTAVLRCQIPS-YMSEYIIVTSWIQDDVNIYLN-----T-DTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        32 ~~GntAvL~C~vp~-~~~~~v~v~sW~~d~~~i~~~-----~-~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      ..|+.+.|.|.+.+ +|+. .+.++|.+|+..|...     . ..+++|.+.  ..|.|.+++++|.| .|+|.|.|..
T Consensus       136 ~~g~~v~L~C~~~~~~P~~-~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~--s~L~i~~~~~~d~g-~ytC~v~~~~  210 (221)
T 3m8o_H          136 QPDGNVVIACLVQGFFPQE-PLSVTWSESGQGVTARNFPPSQDASGDLYTTS--SQLTLPATQCLAGK-SVTCHVKHYT  210 (221)
T ss_dssp             CCTTEEEEEEEEEEEBSSC-SEEEEESCCSTTCEEEECCCEECSSSSCEEEE--EEEEEEGGGSCTTC-EEEEEEEETT
T ss_pred             ccCCCEEEEEEEEeeECCC-CEEEEEEECCEECceEEcCceeeCCCCcEEEE--EEEEECHHHcCCCC-eEEEEEEECC
Confidence            47999999999987 4431 1468999998655211     0 246778764  47999999999997 9999999985

>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble protein, KD, protein engineering, immunotherapy, immune-suppressor, immune system; 2.10A {Homo sapiens} PDB: 1akj_D 1cd8_A 3qzw_G 2q3a_A

Probab=98.50  E-value=2.1e-07  Score=63.37  Aligned_cols=78  Identities=19%  Similarity=0.296  Sum_probs=53.9

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e-----ee-eccc-------CC-CceEEEccCc---cE
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V-----NI-YLNT-------DT-GGKYVVLSSG---DL   81 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~-----~i-~~~~-------~~-~~ry~vlpsG---~L   81 (129)
                      +...+... .|.+|.+|.|.|.+......  ..+.|.+..  .     .| ....       .. .+||.+..++   .|
T Consensus         3 ~~q~p~~v-~v~~G~~vtL~C~~~~~~~~--~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L   79 (114)
T 2hp4_A            3 FRVSPLDR-TWNLGETVELKCQVLLSNPT--SGASWLFQPRGAAASPTFLLYLNQNKPKAAEGLDTQRFSGKRLGDTFVL   79 (114)
T ss_dssp             EEEECCSC-CCCTTCCEEEEEEECCSSCC--SCEEEEEEESSSSCCCEEEEEESSSSCEECTTCCTTTEEEEEETTEEEE
T ss_pred             cEeCCCEE-EEcCCCCEEEEEEeecCCCC--ceEEEEEECCCCCCCcEEEEEEcCCCccccCCCCcccEEEEecCCEEEE
Confidence            34455656 88999999999998754322  358998732  2     12 2111       11 4688775433   59


Q ss_pred             EEeccCCCCCCcceEEEeecc
Q psy5694          82 YVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        82 ~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      .|++++.+|+| .|.|.+.+.
T Consensus        80 ~I~~~~~~Dsg-~Y~C~~~~~   99 (114)
T 2hp4_A           80 TLSDFRRENEG-YYFCSALSN   99 (114)
T ss_dssp             EESSCCGGGCE-EEEEEEEET
T ss_pred             EECCCCHHHCE-EEEEEEecC
Confidence            99999999997 999999874

>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC, H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A {Mus musculus} SCOP: b.1.1.1

Probab=98.50  E-value=1.1e-06  Score=62.50  Aligned_cols=93  Identities=18%  Similarity=0.183  Sum_probs=61.4

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc-----cCCCceEEEc--c---CccEEEeccCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN-----TDTGGKYVVL--S---SGDLYVFNATP   88 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~-----~~~~~ry~vl--p---sG~L~I~nv~~   88 (129)
                      +... .|.+|.+|.|.|.+......  ..+.|++..     ..| ...     ....+||.+.  +   +..|.|+|++.
T Consensus         7 p~~v-~v~~G~~vtL~C~~s~~~~~--~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~   83 (142)
T 2ol3_A            7 QTSI-SVMEKTTVTMDCVYETQDSS--YFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQI   83 (142)
T ss_dssp             CSEE-EEETTCCEEECCBCCCCCSS--CEEEEEEECTTCCEEEEEEEETTCSSCCEETTEEECCBGGGTBCCEEECSCCT
T ss_pred             CCeE-EEecCCCEEEEEEecCCcCC--ceEEEEEeCCCCCcEEEEEECCCCcccccCCCEEEEecCCCCEEEEEECCCCh
Confidence            3444 88999999999998654422  358998742     222 111     1124789884  3   33699999999


Q ss_pred             CCCCcceEEEeeccc---CCeEEecccceEEEEecCC
Q psy5694          89 NDGYKSYRCRTVNKI---TGESQASVFQTRLSITGKL  122 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~l---tge~k~S~~~~~L~V~ep~  122 (129)
                      +|.| .|.|.+.+..   .....-.. ..+|.|.+..
T Consensus        84 ~Dsg-~Y~C~~~~~~~~~~~~~~fg~-GT~L~V~~~~  118 (142)
T 2ol3_A           84 EDSA-VYFCAMRGDYGGSGNKLIFGT-GTLLSVKPGS  118 (142)
T ss_dssp             TTCE-EEEEEEECSSSSCSSCEEECC-CEEEEEECCC
T ss_pred             hhCE-EEEEEEEcCcCCcccccEECC-CEEEEEecCC
Confidence            9997 9999998732   12223333 5688888654

>2xt1_B Camelid VHH 9; viral protein-immune system complex; 1.32A {Vicugna pacos} PDB: 2xv6_B 2xxc_B 2xxm_B

Probab=98.49  E-value=7.3e-07  Score=61.33  Aligned_cols=89  Identities=17%  Similarity=0.283  Sum_probs=57.7

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc---------cCCCceEEEcc-----CccEEE
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN---------TDTGGKYVVLS-----SGDLYV   83 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~---------~~~~~ry~vlp-----sG~L~I   83 (129)
                      ++... .|.+|.+|.|.|.+.+.... ...+.|++..     ..| ...         ....+||.+..     +..|.|
T Consensus         8 qp~~~-~v~~G~~vtL~C~~s~~~~~-~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   85 (121)
T 2xt1_B            8 ESGGG-LVQAGGSLRLSCAASGSFFM-SNVMAWYRQAPGKARELIAAIRGGDMSTVYDDSVKGRFTITRDDDKNILYLQM   85 (121)
T ss_dssp             EECCE-EEETTCCEEEEEEEESSSCC-CSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             cCCCE-EEeCCCCEEEEEEecCeecc-CceEEEEEECCCCCcEEEEEEecCCCcceeCcccCCeEEEEEeCCCCEEEEEE
Confidence            34444 89999999999998643211 2468998842     222 111         01246888753     246999


Q ss_pred             eccCCCCCCcceEEEeecccCCeEEecccceEEEEecC
Q psy5694          84 FNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        84 ~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      .|++.+|+| .|.|.+.+..=|+      ..+|+|+.+
T Consensus        86 ~~v~~~DsG-~Y~C~~~~~~fg~------Gt~l~v~~~  116 (121)
T 2xt1_B           86 NDLKPEDTA-MYYCKASGSSWGQ------GTQVTVSSH  116 (121)
T ss_dssp             CSCCGGGCE-EEEEEETTCCCCC------CEEEEEEC-
T ss_pred             CCCCHHHCE-EEEEEEEeCEECC------CEEEEEecc
Confidence            999999997 9999997321122      447777754

>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*

Probab=98.49  E-value=9.4e-07  Score=66.58  Aligned_cols=91  Identities=19%  Similarity=0.277  Sum_probs=60.5

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-e-cc---cCCCceEEEcc-----CccEEEeccCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-Y-LN---TDTGGKYVVLS-----SGDLYVFNATPN   89 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~-~~---~~~~~ry~vlp-----sG~L~I~nv~~~   89 (129)
                      +... .|.+|.+|.|.|.+.....   ..+.|++..     ..| . ..   ....+||.+..     +..|.|++++.+
T Consensus        10 p~~~-~v~~G~svtL~C~~s~~~~---~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~   85 (210)
T 2eys_A           10 PQSL-IILEGKNCTLQCNYTVSPF---SNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLS   85 (210)
T ss_dssp             CSEE-EEETTCCEEEEEEECCSSC---CEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred             CCEE-EEecCCCEEEEEEECCCCC---CeEEEEEeCCCCCCEEEEEEecCCCCccCCCEEEEEcCCCCEEEEEEccCCcc
Confidence            4445 8899999999999865543   358998743     122 2 11   01257888752     247999999999


Q ss_pred             CCCcceEEEeeccc--CCeEEecccceEEEEecC
Q psy5694          90 DGYKSYRCRTVNKI--TGESQASVFQTRLSITGK  121 (129)
Q Consensus        90 D~g~~Y~C~a~N~l--tge~k~S~~~~~L~V~ep  121 (129)
                      |+| .|.|.+.+..  .+...... ..+|.|...
T Consensus        86 Dsg-~Y~C~~~~~~~~~~~~~fg~-gt~L~V~~~  117 (210)
T 2eys_A           86 DSA-SYICVVSDRGSTLGRLYFGR-GTQLTVWPD  117 (210)
T ss_dssp             GCE-EEEEEEESCSSTTCCEEECC-CEEEEEECC
T ss_pred             cCc-eEEEEEEccCCCcccceECC-CEEEEEECC
Confidence            997 9999998742  12222222 457888754

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=98.49  E-value=8.9e-08  Score=69.84  Aligned_cols=68  Identities=16%  Similarity=0.235  Sum_probs=49.8

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCcee-EeEEeeccee----eecccCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYII-VTSWIQDDVN----IYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~-v~sW~~d~~~----i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      .+..|+++.|.|.+.+. |+   + .++|.+++..    ..+.....++|.+  ++.|.|.+++++| | .|.|.|.|..
T Consensus       136 ~~~~g~~v~L~C~~~g~~P~---p~~v~W~~~~~~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~~-g-~Y~C~a~n~~  208 (220)
T 1pz5_B          136 SDTSGSSVTLGCLVKGYFPE---PVTVKWNYGALSSGVRTVSSVLQSGFYSL--SSLVTVPSSTWPS-Q-TVICNVAHPA  208 (220)
T ss_dssp             CCSCSSSEEEEEEEEEEBSS---CCEEEEGGGTCCTTEEECCCEEETTEEEE--EEEEEECGGGTTT-S-CCEEEEEEGG
T ss_pred             ccCCCCcEEEEEEEEEEeCC---CeEEEEecCCcccceEEcCCcccCCeEEE--EEEEEEcchhcCC-c-eEEEEEEECC
Confidence            35689999999999876 53   4 7899998852    1111001256655  5889999999855 6 9999999998


Q ss_pred             C
Q psy5694         104 T  104 (129)
Q Consensus       104 t  104 (129)
                      +
T Consensus       209 ~  209 (220)
T 1pz5_B          209 S  209 (220)
T ss_dssp             G
T ss_pred             c
Confidence            4

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=98.49  E-value=1.1e-07  Score=68.90  Aligned_cols=70  Identities=13%  Similarity=0.223  Sum_probs=49.9

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCcee-EeEEeecceeeecc----cCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYII-VTSWIQDDVNIYLN----TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~-v~sW~~d~~~i~~~----~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      .+..|+++.|.|.+.++ |+   + .++|.+++..+...    ...++.|.+  ++.|.|.+++++| | .|+|.|.|..
T Consensus       129 ~~~~g~~v~L~C~~~g~~P~---p~~v~W~~~~~~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~~-g-~Y~C~a~n~~  201 (210)
T 3d9a_H          129 AAQTNSMVTLGCLVKGYFPE---PVTVTWNSGSLSSGVHTFPAVLQSDLYTL--SSSVTVPSSTWPS-E-TVTCNVAHPA  201 (210)
T ss_dssp             SCCCSSEEEEEEEEEEEBSS---CCEEEEGGGTBCTTEEECCCEEETTEEEE--EEEEEEEGGGTTT-S-CCEEEEEEGG
T ss_pred             ccccCCcEEEEEEEeeEecC---CcEEEEeeCCcccceEEcCCccCCCcEEE--EEEEEEcHHHcCC-C-cEEEEEEeCC
Confidence            45689999999999876 43   4 78999998543110    001245544  3679999999966 6 9999999998


Q ss_pred             CCe
Q psy5694         104 TGE  106 (129)
Q Consensus       104 tge  106 (129)
                      +.+
T Consensus       202 ~~~  204 (210)
T 3d9a_H          202 SST  204 (210)
T ss_dssp             GTE
T ss_pred             CCc
Confidence            443

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=98.48  E-value=4e-07  Score=75.79  Aligned_cols=77  Identities=16%  Similarity=0.075  Sum_probs=54.5

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCC-CceeEeEEeecc--e---e-eecc--------cCCCceEEEcc-----CccEEEe
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMS-EYIIVTSWIQDD--V---N-IYLN--------TDTGGKYVVLS-----SGDLYVF   84 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~-~~v~v~sW~~d~--~---~-i~~~--------~~~~~ry~vlp-----sG~L~I~   84 (129)
                      +... .|.+|++|.|.|.+.+.+. .....+.|+++.  .   . ++..        ....+||.+..     +..|.|+
T Consensus         7 p~~v-~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   85 (512)
T 1zvo_C            7 SGPG-LVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLR   85 (512)
T ss_pred             CCCE-EEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEEC
Confidence            4455 8999999999999976532 212568998852  1   1 2111        01247998863     2579999


Q ss_pred             ccCCCCCCcceEEEeeccc
Q psy5694          85 NATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        85 nv~~~D~g~~Y~C~a~N~l  103 (129)
                      |++.+|+| .|.|++.+..
T Consensus        86 ~v~~~Dsg-~Y~C~~~~~~  103 (512)
T 1zvo_C           86 SMSAADTA-MYYCARGNPP  103 (512)
T ss_pred             cCCHHHCE-EEEEEEECCC
Confidence            99999997 9999999864

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=98.48  E-value=4e-07  Score=69.64  Aligned_cols=75  Identities=13%  Similarity=0.242  Sum_probs=51.4

Q ss_pred             EeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc---------cCCCceEEEccCcc-----EE
Q psy5694          23 INVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN---------TDTGGKYVVLSSGD-----LY   82 (129)
Q Consensus        23 ~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~---------~~~~~ry~vlpsG~-----L~   82 (129)
                      .++... .|.+|++|.|.|.+.+...+ ...+.|++..     ..| .-.         ....+||.+..++.     |.
T Consensus        28 ~q~~~~-~~~~G~~v~L~C~~s~~~~~-~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~  105 (267)
T 3u1s_H           28 VQSGAE-VKKPGSSVKVSCKASGNSFS-NHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYME  105 (267)
T ss_dssp             EECCCE-EECTTCCEEEEEEEGGGGGG-TSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEE
T ss_pred             EeeCCE-EEeCCCcEEEEEEeeCCccC-CCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEE
Confidence            344444 89999999999998643212 2468998742     122 111         11247898865444     99


Q ss_pred             EeccCCCCCCcceEEEee
Q psy5694          83 VFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        83 I~nv~~~D~g~~Y~C~a~  100 (129)
                      |+|++.+|+| .|.|.+.
T Consensus       106 I~~v~~~DsG-~Y~C~~~  122 (267)
T 3u1s_H          106 LRGLTADDTA-IYYCLTG  122 (267)
T ss_dssp             ECSCCGGGCE-EEEEEEE
T ss_pred             ECCCChhhCE-EEEEEEC
Confidence            9999999997 9999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	129
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	0.002

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 32.9 bits (74), Expect = 0.002
 Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 5/83 (6%)

Query: 29  HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATP 88
           H V   NT   RC         +    W+++          GG  V      L + +  P
Sbjct: 15  HAVPAANTVKFRCPAGGNPMPTM---RWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP 71

Query: 89  NDGYKSYRCRTVNKITGESQASV 111
           +D   +Y C   N+  G    + 
Sbjct: 72  SDK-GNYTCVVENEY-GSINHTY 92

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	129
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.66
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.64
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.63
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.62
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.62
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.62
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.6
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.6
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.59
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.58
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.57
d2avga1	110	Cardiac myosin binding protein C, different domain	99.57
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.57
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.56
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.55
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.55
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.54
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.54
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.54
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.53
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.53
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.51
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.5
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.49
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.49
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.49
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.48
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.48
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.47
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.46
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.46
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.46
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.46
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.46
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.45
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.44
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.44
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.44
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.43
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.43
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.43
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.43
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.42
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.42
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.41
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	99.39
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.37
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.36
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.34
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.3
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.29
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.25
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.23
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.23
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.19
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.19
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.17
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.15
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.13
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	99.13
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.1
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.08
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.94
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.9
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.83
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.82
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.82
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.77
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.7
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.63
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.59
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.56
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.53
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.52
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.49
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.41
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.33
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.3
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.28
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.28
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.24
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.24
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.23
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.19
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.18
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.17
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.17
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.14
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.14
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.13
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.13
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.12
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.11
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.11
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.11
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.1
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.09
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.09
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.09
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.08
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.07
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.07
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.06
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.05
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.04
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.04
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.04
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.02
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.99
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	97.98
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.98
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	97.98
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	97.98
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.98
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.97
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	97.97
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.96
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.95
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.94
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	97.94
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.93
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.91
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.89
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.89
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.89
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.87
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.87
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	97.83
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.81
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.81
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	97.81
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	97.79
d8faba1	103	Immunoglobulin light chain lambda variable domain,	97.78
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.76
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	97.76
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.75
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	97.74
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.71
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.71
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	97.7
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	97.7
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.69
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.68
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.65
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	97.65
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.64
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.63
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.62
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.61
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.61
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.61
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	97.6
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.59
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.58
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.5
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.5
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.49
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.48
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.46
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	97.46
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.42
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	97.41
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.4
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.4
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	97.39
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.39
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.38
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.37
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.35
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.34
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.32
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.31
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.3
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.29
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.29
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.27
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	97.27
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.26
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.24
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.23
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.22
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	97.22
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.21
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.18
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	97.09
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	97.08
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	97.07
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.07
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.04
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	96.96
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	96.95
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	96.92
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	96.91
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	96.82
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	96.81
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	96.8
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	96.71
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	96.57
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	96.55
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	96.52
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	96.37
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	96.35
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	96.22
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	96.19
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	96.06
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	95.97
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	95.94
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	95.93
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	95.9
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	95.83
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	95.78
d1igyb3	116	Immunoglobulin heavy chain gamma constant domain 2	95.62
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	95.59
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	95.59
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	95.43
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	95.43
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	95.41
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	95.35
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	95.33
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	95.31
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	95.28
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	95.27
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	95.21
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	95.16
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	95.13
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	95.12
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	95.07
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	95.05
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	94.95
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	94.75
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	94.72
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	94.69
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	94.68
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	94.67
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	94.59
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	94.57
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	94.5
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	94.46
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	94.46
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	94.38
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	94.25
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	94.25
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	94.19
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	94.09
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	94.09
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	94.08
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	94.07
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	93.98
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	93.96
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	93.87
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	93.79
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	93.5
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	93.39
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	93.36
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	93.33
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	93.24
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	93.21
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	93.19
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	93.08
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	92.61
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	92.43
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	92.0
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	91.93
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	91.82
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	91.51
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	91.34
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	91.22
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	90.95
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	89.61
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	88.53
d1xiwb_	74	CD3 delta chain ectodomain fragment {Human (Homo s	87.55

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.66  E-value=8.7e-17  Score=108.42  Aligned_cols=96  Identities=18%  Similarity=0.376  Sum_probs=71.7

Q ss_pred             eeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEE
Q psy5694          19 QKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCR   98 (129)
Q Consensus        19 q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~   98 (129)
                      ++|..++.+.+.|.+|++|+|.|.++.+.+  .+.++|++|+..+... ....++....+|.|.|.+++.+|+| .|+|.
T Consensus         4 ~~F~~~~~~~v~v~eG~~~~l~C~~~~~~p--~~~v~W~k~g~~~~~~-~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~   79 (105)
T d1cs6a2           4 QEFSAEERDPVKITEGWGVMFTCSPPPHYP--ALSYRWLLNEFPNFIP-ADGRRFVSQTTGNLYIAKTEASDLG-NYSCF   79 (105)
T ss_dssp             CCCCSSCCCCEEEETTSCEEECCCCCSEES--CCEEEEEESSTTCBCC-CCSSEEECTTTCCEEESSCCGGGCE-EEEEE
T ss_pred             CcccCCCCCCEEEeCCCeEEEEEEccCCCC--CCEEEEEEeecccccc-ccceeeeecCCCEEeecccccccCc-EEEEE
Confidence            578888877768999999999999854433  3679999998554321 2345677778999999999999997 99999


Q ss_pred             eecccCCeEEec--ccceEEEEe
Q psy5694          99 TVNKITGESQAS--VFQTRLSIT  119 (129)
Q Consensus        99 a~N~ltge~k~S--~~~~~L~V~  119 (129)
                      |.|..+ ....+  ..+++|.|-
T Consensus        80 a~N~~g-~~~~~v~~~~~~l~v~  101 (105)
T d1cs6a2          80 ATSHID-FITKSVFSKFSQLSLA  101 (105)
T ss_dssp             EEEEET-TEEEEEECCCEEEEEE
T ss_pred             EEECCC-CEEEEEEeccEEEEEc
Confidence            999984 43332  124566654

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.64  E-value=2.7e-16  Score=103.23  Aligned_cols=87  Identities=17%  Similarity=0.269  Sum_probs=71.8

Q ss_pred             eeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEE
Q psy5694          19 QKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCR   98 (129)
Q Consensus        19 q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~   98 (129)
                      ..|...+.+. .|..|+++.|.|.+.+.|.   +.++|++|+..|.+    +.||.+ .++.|.|.+++.+|+| .|+|.
T Consensus         2 P~f~~~~~~~-~v~~G~~~~l~C~~~g~P~---p~v~W~k~g~~i~~----~~~~~~-~~~~L~i~~v~~~D~G-~Y~C~   71 (89)
T d1cs6a4           2 PDWLDVITDT-EADIGSDLRWSCVASGKPR---PAVRWLRDGQPLAS----QNRIEV-SGGELRFSKLVLEDSG-MYQCV   71 (89)
T ss_dssp             EEEEECCCCE-EEETTCCEEEECEEEEESC---CEEEEEETTEECCC----CSSEEE-ETTEEEESSCCGGGCE-EEEEE
T ss_pred             CCeEEECCCE-EECCCCcEEEEEEEEEEcC---CEEEEEEeeccccc----cceeee-eeeeEEEEeecccCCE-EEEEE
Confidence            3567778888 9999999999999987774   57899999988853    467755 5889999999999997 99999


Q ss_pred             eecccCCeEEecccceEEEEe
Q psy5694          99 TVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        99 a~N~ltge~k~S~~~~~L~V~  119 (129)
                      |.|.. |+.  +. .++|.|+
T Consensus        72 a~N~~-G~~--~~-~~~l~V~   88 (89)
T d1cs6a4          72 AENKH-GTV--YA-SAELTVQ   88 (89)
T ss_dssp             EEETT-EEE--EE-EEEEEEE
T ss_pred             EEeCC-CEE--EE-EEEEEEE
Confidence            99998 664  33 5688885

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.63  E-value=3.7e-16  Score=102.43  Aligned_cols=86  Identities=21%  Similarity=0.363  Sum_probs=67.7

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEe
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a   99 (129)
                      .|...+.+.+.|.+|+++.|.|.+.+.|+   +.++|.+|+..|.     ++|+.+.. +.|.|.+++.+|+| .|+|+|
T Consensus         4 ~f~~~p~~~~~v~~G~~~~l~C~~~g~P~---p~v~W~~~~~~i~-----~~~~~~~~-~~L~i~~v~~~d~G-~Y~C~a   73 (89)
T d1biha4           4 KYEQKPEKVIVVKQGQDVTIPCKVTGLPA---PNVVWSHNAKPLS-----GGRATVTD-SGLVIKGVKNGDKG-YYGCRA   73 (89)
T ss_dssp             EEEECCCSEEEECTTSCEEEECEEEEESC---CCCEEEETTEECC-----SSSEEEET-TEEEESSCCSTTCE-EEEEEE
T ss_pred             eEEECCCCCEEEeCCCeEEEEEEEEEeCC---CEEEEEeCCccCc-----cccEEEee-eeEEECCCChhhCE-EEEEEE
Confidence            46666666547888999999999987774   5689999998883     46887764 45999999999997 999999


Q ss_pred             ecccCCeEEecccceEEEEe
Q psy5694         100 VNKITGESQASVFQTRLSIT  119 (129)
Q Consensus       100 ~N~ltge~k~S~~~~~L~V~  119 (129)
                      .|.+ |+...   .+.|.|+
T Consensus        74 ~N~~-G~~~~---~~~l~V~   89 (89)
T d1biha4          74 TNEH-GDKYF---ETLVQVN   89 (89)
T ss_dssp             EETT-EEEEE---EEEEEEC
T ss_pred             EECC-CEEEE---EEEEEEC
Confidence            9998 76433   3467663

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=2.5e-16  Score=103.64  Aligned_cols=80  Identities=21%  Similarity=0.366  Sum_probs=69.1

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEe
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a   99 (129)
                      -|...|++. .+.+|+++.|.|.+.+.|+   +.+.|++++..|.+.  ...++.+.++|.|.|.+++.+|+| .|+|.|
T Consensus         3 ~F~~~P~~~-~v~~G~~~~l~C~v~g~p~---p~v~W~~~~~~i~~~--~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a   75 (92)
T d1epfa2           3 MFKNAPTPQ-EFKEGEDAVIVCDVVSSLP---PTIIWKHKGRDVILK--KDVRFIVLSNNYLQIRGIKKTDEG-TYRCEG   75 (92)
T ss_dssp             EEEECCSSE-ECCTTSCEEECCEEECSSC---CEEEEEETTEEGGGG--CCTTEEECTTSCEEETTCCGGGCE-EEEEEE
T ss_pred             EEEEcCCCE-EEeCCCcEEEEEEEeecCC---CeEEEEEcCcccccc--cceeeeeeeeeeEEECCCCHHhCE-EEEEEE
Confidence            467788888 9999999999999988774   678999999877653  456788889999999999999997 999999


Q ss_pred             ecccCCe
Q psy5694         100 VNKITGE  106 (129)
Q Consensus       100 ~N~ltge  106 (129)
                      .|..+++
T Consensus        76 ~n~~~~~   82 (92)
T d1epfa2          76 RILARGE   82 (92)
T ss_dssp             EEGGGTE
T ss_pred             EECcCCE
Confidence            9987666

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=5.2e-16  Score=104.70  Aligned_cols=100  Identities=12%  Similarity=0.100  Sum_probs=73.8

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc---------CccEEEeccCCCCC
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS---------SGDLYVFNATPNDG   91 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp---------sG~L~I~nv~~~D~   91 (129)
                      |...+++. .|..|.+|.|.|.+.+.|....+.+.|++++..+... ..+.++.+..         ...|.|.+++.+|+
T Consensus         3 F~~~P~~~-~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   80 (113)
T d2dava1           3 FIEKPQGG-TVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLAS-KAGKHLQLKETFERHSRVYTFEMQIIKAKDNFA   80 (113)
T ss_dssp             CCSCCCCC-EEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHH-HTTSSEEEEEEEETTTTEEEEEEEECSCCTTSC
T ss_pred             EeECCceE-EEeCCCEEEEEEEEccCCCCCCCEEEEEEeecccccc-ccceeeeeccceeeEeecCEEEEEEccCCHHHC
Confidence            56678888 9999999999999988775445789999987322111 1223333211         23599999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEecCCCCCCC
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSITGKLKSLCT  127 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~~~~~~  127 (129)
                      | .|+|+|.|.. |+.  +. .+.|.|.++....|.
T Consensus        81 G-~Y~C~a~N~~-G~~--~~-~~~L~V~~~~~~~p~  111 (113)
T d2dava1          81 G-NYRCEVTYKD-KFD--SC-SFDLEVHESTGTTPN  111 (113)
T ss_dssp             E-EEEEEEECSS-CEE--EE-CCEEEEECCCCSCCC
T ss_pred             e-EEEEEEEeCC-CEE--EE-EEEEEEEcCCCcCCC
Confidence            8 9999999998 774  33 569999998877663

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.62  E-value=3.9e-16  Score=103.14  Aligned_cols=89  Identities=21%  Similarity=0.307  Sum_probs=72.3

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc---cEEEeccCCCCCCcceE
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVFNATPNDGYKSYR   96 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG---~L~I~nv~~~D~g~~Y~   96 (129)
                      .|...+++. .+.+|.+|.|.|.+.+.|.   +.++|++|+..|..    +.||.+..+|   .|.|.+++.+|+| .|+
T Consensus         3 ~f~~~p~~~-~v~~G~~~~l~C~~~g~P~---p~v~W~~~~~~l~~----~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~   73 (97)
T d1koaa1           3 RFIVKPYGT-EVGEGQSANFYCRVIASSP---PVVTWHKDDRELKQ----SVKYMKRYNGNDYGLTINRVKGDDKG-EYT   73 (97)
T ss_dssp             EEEECCCCC-EEETTSCEEEEEEEECSSC---CEEEEEETTEECCS----BTTBBCCCSTTEEEEEESCCCSGGGS-CEE
T ss_pred             EEEEeCCCE-EEeCCCcEEEEEEEEEcCC---CEEEEEEeeeccce----eeEEEEEecCCeeEEEeCCCceecCE-EEE
Confidence            467778888 9999999999999988774   57899999988843    4677766544   4999999999998 999


Q ss_pred             EEeecccCCeEEecccceEEEEecC
Q psy5694          97 CRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        97 C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      |+|.|.+ |+.  +. .+.|.|.+.
T Consensus        74 C~a~N~~-G~~--~~-~~~l~V~~~   94 (97)
T d1koaa1          74 VRAKNSY-GTK--EE-IVFLNVTRH   94 (97)
T ss_dssp             EEEEETT-EEE--EE-EECCEEECS
T ss_pred             EEEEECC-CEE--EE-EEEEEEeec
Confidence            9999998 764  33 458888754

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.60  E-value=1.5e-15  Score=101.06  Aligned_cols=91  Identities=21%  Similarity=0.414  Sum_probs=72.0

Q ss_pred             EeeeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEc--c--CccEEEeccCCCCCC
Q psy5694          17 VKQKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL--S--SGDLYVFNATPNDGY   92 (129)
Q Consensus        17 v~q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl--p--sG~L~I~nv~~~D~g   92 (129)
                      +...|...+++. .+..|.++.|.|.+.+.|+   +.+.|++|+..|..    +++|.+.  .  .+.|.|.+++.+|.|
T Consensus         7 ~~P~f~~~~~~~-~v~~G~~~~l~C~~~g~P~---p~v~W~k~~~~i~~----~~~~~~~~~~~~~~~L~I~~~~~~D~G   78 (102)
T d1fhga_           7 VKPYFTKTILDM-EVVEGSAARFDCKVEGYPD---PEVMWFKDDNPVKE----SRHFQIDYDEEGNCSLTISEVCGDDDA   78 (102)
T ss_dssp             EEEEEEECCCCE-EEETTSCEEEEEEEEEESC---CEEEEEETTEECCC----SSSEEEEECTTCEEEEEESSCCGGGCE
T ss_pred             CCCeEEcCCCcE-EEecCCcEEEEEEEEeccC---CeEEEEeeeccccc----eeeEeEEEecCceeeeEecCCCHHhCE
Confidence            345677778887 9999999999999987763   67899999988853    4666653  2  235999999999997


Q ss_pred             cceEEEeecccCCeEEecccceEEEEec
Q psy5694          93 KSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        93 ~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                       .|+|+|.|.. |+...   .+.|.|..
T Consensus        79 -~Y~C~a~N~~-G~~~~---~~~L~V~s  101 (102)
T d1fhga_          79 -KYTCKAVNSL-GEATC---TAELLVET  101 (102)
T ss_dssp             -EEEEEEEETT-EEEEE---EEEEEEEC
T ss_pred             -EEEEEEEECC-cEEEE---EEEEEEEE
Confidence             9999999998 77433   45888864

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.60  E-value=8.8e-16  Score=100.51  Aligned_cols=87  Identities=17%  Similarity=0.201  Sum_probs=66.7

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceE-EEccCccEEEeccCCCCCCcceEEEe
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKY-VVLSSGDLYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry-~vlpsG~L~I~nv~~~D~g~~Y~C~a   99 (129)
                      |...+.+. .|.+|++|.|.|.+.+.|++  ..+.|++|+..|...   ..++ ....+|.|.|.+++.+|+| .|+|+|
T Consensus         5 i~~~p~~~-~v~~g~~~~l~C~~~g~p~p--~~v~W~~~g~~l~~~---~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~a   77 (94)
T d1biha1           5 LKDQPAEV-LFRENNPTVLECIIEGNDQG--VKYSWKKDGKSYNWQ---EHNAALRKDEGSLVFLRPQASDEG-HYQCFA   77 (94)
T ss_dssp             ECCCCSEE-EEETTSCEEECCCEESCCSS--CEEEEEESSSBCCTT---TTTEEECTTSCCEEESSCCGGGCE-EEEEEE
T ss_pred             EEecCCcE-EEeCCCeEEEEEEecCCCCe--eEEEEEeeeeeeeee---cceeeecccceEEEEeccChhcCe-EEEEEE
Confidence            55667777 99999999999999887653  358999999877432   2333 3457899999999999997 999999


Q ss_pred             ecccCCeEEecccceEEE
Q psy5694         100 VNKITGESQASVFQTRLS  117 (129)
Q Consensus       100 ~N~ltge~k~S~~~~~L~  117 (129)
                      .|.. |.. .|. ...|.
T Consensus        78 ~N~~-G~~-~s~-~v~l~   92 (94)
T d1biha1          78 ETPA-GVA-SSR-VISFR   92 (94)
T ss_dssp             EETT-EEE-ECC-CEEEE
T ss_pred             EeCC-CEE-EEE-EEEEE
Confidence            9998 652 344 44544

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.59  E-value=1.8e-15  Score=100.00  Aligned_cols=90  Identities=20%  Similarity=0.246  Sum_probs=70.4

Q ss_pred             eeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEc-cCc--cEEEeccCCCCCCcce
Q psy5694          19 QKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL-SSG--DLYVFNATPNDGYKSY   95 (129)
Q Consensus        19 q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl-psG--~L~I~nv~~~D~g~~Y   95 (129)
                      ..|...+++. .+.+|+.|.|.|.+.+.|+   +.++|++|+..|.++   +..+.+. .+|  .|.|.+++.+|+| .|
T Consensus         5 P~f~~~~~~~-~v~~g~~v~l~c~v~g~P~---p~v~W~k~~~~i~~~---~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y   76 (98)
T d1g1ca_           5 PKIFERIQSQ-TVGQGSDAHFRVRVVGKPD---PECEWYKNGVKIERS---DRIYWYWPEDNVCELVIRDVTGEDSA-SI   76 (98)
T ss_dssp             EEEEECCCCE-EEETTSCEEEEEEEEEESC---CEEEEEETTEECCCC---SSEEEEEEETTEEEEEECSCCGGGCE-EE
T ss_pred             CeEecCCCcE-EEcCCCcEEEEEEEEEecC---CeEEEEeCceEEeee---eeeEEEeccceEEEEEeccCccccCE-EE
Confidence            4567777777 9999999999999987764   678999999888542   2334333 334  6999999999997 99


Q ss_pred             EEEeecccCCeEEecccceEEEEec
Q psy5694          96 RCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        96 ~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      +|.|.|.. |+.  +. .+.|.|+.
T Consensus        77 ~c~a~N~~-G~~--~~-~~~L~V~~   97 (98)
T d1g1ca_          77 MVKAINIA-GET--SS-HAFLLVQA   97 (98)
T ss_dssp             EEEEEETT-EEE--EE-EEEEEEEC
T ss_pred             EEEEEECC-cEE--EE-EEEEEEEE
Confidence            99999988 774  33 56898875

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.8e-15  Score=99.05  Aligned_cols=89  Identities=19%  Similarity=0.221  Sum_probs=69.6

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEc--cCc-cEEEeccCCCCCCcceEE
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL--SSG-DLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl--psG-~L~I~nv~~~D~g~~Y~C   97 (129)
                      |...+++. .+.+|+++.|.|.+.+.++   +.+.|++|+..|..    ++||.+.  +++ .|.|.+++.+|+| .|+|
T Consensus         3 ~~~~p~~~-~v~~G~~~~l~C~v~g~p~---p~v~W~k~~~~l~~----~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C   73 (101)
T d2cqva1           3 IIQFPEDQ-KVRAGESVELFGKVTGTQP---ITCTWMKFRKQIQE----SEHMKVENSENGSKLTILAARQEHCG-CYTL   73 (101)
T ss_dssp             ESCCCCSE-EEETTCCEEEEEEEESSSS---CEEEEEESSSBCCC----SSSEEEEECSSEEEEEETTCCTTTCE-EEEE
T ss_pred             EEeeCCcE-EEeCCCcEEEEEEEEecCC---CEEEEEeCceeecc----CCcEEEEEecceeEEEEeeCCcccCE-EEEE
Confidence            33455666 8999999999999987764   57899999988743    4666654  333 4999999999997 9999


Q ss_pred             EeecccCCeEEecccceEEEEecCC
Q psy5694          98 RTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        98 ~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                      .|.|.+ |+.  +. .+.|.|.+++
T Consensus        74 ~a~N~~-G~~--~~-~~~l~V~~~P   94 (101)
T d2cqva1          74 LVENKL-GSR--QA-QVNLTVVDKP   94 (101)
T ss_dssp             EEECSS-CEE--EC-CEEEEEECSC
T ss_pred             EEEECC-CEE--EE-EEEEEEEecC
Confidence            999998 774  33 5589998764

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.57  E-value=3.5e-16  Score=102.44  Aligned_cols=87  Identities=14%  Similarity=0.179  Sum_probs=68.4

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEc---cCccEEEeccCCCCCCcceEE
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL---SSGDLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl---psG~L~I~nv~~~D~g~~Y~C   97 (129)
                      |-..|++. .|.+|.+|.|.|.+.+.|.   +.+.|++|+..|.+    +.++.+.   .++.|.|.+++.+|+| .|+|
T Consensus         2 ii~~P~~~-~v~~G~~~~l~C~~~g~P~---p~v~W~~~g~~l~~----~~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C   72 (91)
T d1tnna_           2 ILTKPRSM-TVYEGESARFSCDTDGEPV---PTVTWLRKGQVLST----SARHQVTTTKYKSTFEISSVQASDEG-NYSV   72 (91)
T ss_dssp             CSBCCCCE-ECSSSSCCCEEEECCCSSC---CCCEEESSSSTTCS----SSSCEEEECSSEEEEECSSCCSCCCE-EEEE
T ss_pred             EEeCCcCE-EEeCCCcEEEEEEEEEEeC---CeEEEEEeeccccc----ccceeeeeecceeEEeecCCCHHHCE-EEEE
Confidence            34567777 9999999999999998874   56899999977743    3444432   5678999999999997 9999


Q ss_pred             EeecccCCeEEecccceEEEEec
Q psy5694          98 RTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        98 ~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      .|.|.+ |+.  +. .+.|.|+|
T Consensus        73 ~a~N~~-G~~--~~-~~~l~V~e   91 (91)
T d1tnna_          73 VVENSE-GKQ--EA-EFTLTIQK   91 (91)
T ss_dssp             ECBCSS-CBC--CE-EEEEECCC
T ss_pred             EEEECC-CEE--EE-EEEEEEEC
Confidence            999998 763  33 55888764

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=6.2e-15  Score=99.03  Aligned_cols=94  Identities=14%  Similarity=0.192  Sum_probs=70.1

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecce-eeecccCCCceEEEcc---------CccEEEeccCCC
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDV-NIYLNTDTGGKYVVLS---------SGDLYVFNATPN   89 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~-~i~~~~~~~~ry~vlp---------sG~L~I~nv~~~   89 (129)
                      .|-..|++. .|..|++|.|.|++-+.|....+.+.|++++. .+..  ..+.++.+..         .+.|.|.+++.+
T Consensus         6 ~Fv~~P~~~-~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   82 (110)
T d2avga1           6 LFVMRPQDG-EVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSS--KVGQHLQLHDSYDRASKVYLFELHITDAQPA   82 (110)
T ss_dssp             SEEECCCCE-EEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTT--TCSSSEEEEEEEETTTTEEEEEEEEESCCTT
T ss_pred             EeEECCCeE-EEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecc--cCCceeEeeeeeEEecccCEEEEEEeccCHH
Confidence            466678887 99999999999999877654457899999873 3321  1223333221         246999999999


Q ss_pred             CCCcceEEEeecccCCeEEecccceEEEEecC
Q psy5694          90 DGYKSYRCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        90 D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      |+| .|+|.|.|.. |+.  +. ...|.|+++
T Consensus        83 D~G-~Y~C~a~N~~-G~~--~~-~~~L~V~~~  109 (110)
T d2avga1          83 FTG-GYRCEVSTKD-KFD--CS-NFNLTVHEA  109 (110)
T ss_dssp             CCE-EEEEEEEETT-EEE--EE-EEEEEEESC
T ss_pred             HCc-EEEEEEEECC-CeE--EE-EEEEEEEec
Confidence            997 9999999998 764  43 569999886

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.7e-15  Score=99.48  Aligned_cols=73  Identities=21%  Similarity=0.372  Sum_probs=61.5

Q ss_pred             eeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCC
Q psy5694          26 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITG  105 (129)
Q Consensus        26 ~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltg  105 (129)
                      .+. .+.+|++|.|.|.+.+.+    +.+.|.+++..|.+   .+.+|.+..+|.|.|.|++.+|+| .|+|+|.|..++
T Consensus         5 ~~~-~~~~G~~~~l~C~~~g~~----~~v~W~~~g~~l~~---~~~~~~~~~~~~L~I~~v~~~DsG-~Y~C~A~n~~g~   75 (92)
T d1olza1           5 RQH-FFKHGGTAELKCSQKSNL----ARVFWKFQNGVLKA---ESPKYGLMGRKNLLIFNLSEGDSG-VYQCLSEERVKN   75 (92)
T ss_dssp             EEE-EEETTSCEEECCCCSCTT----CEEEEEESSSBCCC---CSSSBCCTTTTCEEECSCCGGGCE-EEEEEEEEECSS
T ss_pred             hhe-eEeCCCEEEEEEEeeccC----CceeeecCccccee---eeeeeecceeeEEEECCCCHHHCc-EEEEEEEEcCCC
Confidence            344 789999999999998733    46799999977754   367899999999999999999997 999999999866


Q ss_pred             eE
Q psy5694         106 ES  107 (129)
Q Consensus       106 e~  107 (129)
                      +.
T Consensus        76 ~~   77 (92)
T d1olza1          76 KT   77 (92)
T ss_dssp             SE
T ss_pred             EE
Confidence            53

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=1e-14  Score=95.98  Aligned_cols=87  Identities=16%  Similarity=0.213  Sum_probs=68.8

Q ss_pred             EeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc-CccEEEeccCCCCCCcceEEEeec
Q psy5694          23 INVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS-SGDLYVFNATPNDGYKSYRCRTVN  101 (129)
Q Consensus        23 ~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp-sG~L~I~nv~~~D~g~~Y~C~a~N  101 (129)
                      .++.+. .|.+|++++|.|.+.+.+    +.+.|++++..|..    +.++.+.. ++.|.|++++.+|.| .|+|.|.|
T Consensus         8 i~~~~~-~v~~g~~v~l~C~~~~~~----~~v~W~~~~~~l~~----~~~~~~~~~~~~L~I~~v~~~d~G-~Y~C~a~N   77 (96)
T d1l6za2           8 LQVTNT-TVKELDSVTLTCLSNDIG----ANIQWLFNSQSLQL----TERMTLSQNNSILRIDPIKREDAG-EYQCEISN   77 (96)
T ss_dssp             EECSCS-EECTTSCEEEEECCCCSS----CEEEEEETTEECCC----CTTEEEETTTTEEEECSCCGGGCE-EEEEEEES
T ss_pred             EEcCce-EEeCCCeEEEEEccCCCC----CCEEEEEeeeeccc----ccceeccCCceEEEEeccchhhce-EEEEEEEe
Confidence            356777 899999999999986533    45799999988743    46666654 678999999999997 99999999


Q ss_pred             ccCCeEEecccceEEEEecCC
Q psy5694         102 KITGESQASVFQTRLSITGKL  122 (129)
Q Consensus       102 ~ltge~k~S~~~~~L~V~ep~  122 (129)
                      .+ |+. .|. ...|.|..++
T Consensus        78 ~~-g~~-~S~-~~~L~V~~~P   95 (96)
T d1l6za2          78 PV-SVR-RSN-SIKLDIIFDP   95 (96)
T ss_dssp             SS-CCE-ECC-CCEEEECCSC
T ss_pred             CC-CCe-EEE-eEEEEEEcCC
Confidence            87 653 454 6799997664

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.55  E-value=7.1e-15  Score=96.42  Aligned_cols=84  Identities=14%  Similarity=0.182  Sum_probs=65.6

Q ss_pred             EeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          23 INVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        23 ~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      .++... .|.+|++++|.|++++.++  .+.+.|++|+..+.+.         ..++.|.|.+++.+|+| .|+|+|.|.
T Consensus         5 lq~p~~-~v~eG~~v~L~C~~~~~~p--~~~~~W~k~g~~~~~~---------~~~~~l~i~~v~~~dsG-~Y~C~a~n~   71 (88)
T d2fcba2           5 LQTPHL-EFQEGETIVLRCHSWKDKP--LVKVTFFQNGKSKKFS---------RSDPNFSIPQANHSHSG-DYHCTGNIG   71 (88)
T ss_dssp             EECSCS-EECTTCCEEEEEEEGGGCC--CEEEEEEETTEEEEEE---------SSCCEEEETTCCGGGCE-EEEEEEEET
T ss_pred             EeCCCC-eEecCCeEEEEEEecCCCC--CcEEEEEeeccccccc---------ccccccccCccCHHHCC-eEEEEEEeC
Confidence            345555 7889999999999876544  3678999999776431         13578999999999997 999999998


Q ss_pred             cCCeEEecccceEEEEecCC
Q psy5694         103 ITGESQASVFQTRLSITGKL  122 (129)
Q Consensus       103 ltge~k~S~~~~~L~V~ep~  122 (129)
                      . |. ..|. ...|+|+.|.
T Consensus        72 ~-g~-~~S~-~v~l~V~~Ps   88 (88)
T d2fcba2          72 Y-TL-YSSK-PVTITVQAPA   88 (88)
T ss_dssp             T-EE-EECC-CEEEEECCCC
T ss_pred             C-CC-EEee-eEEEEEeCCC
Confidence            6 44 4465 7899999874

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.55  E-value=2e-14  Score=94.48  Aligned_cols=85  Identities=18%  Similarity=0.162  Sum_probs=66.8

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEee
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      .-.++.+. .|.+|+++.|+|++++.++  .+.+.|++|+..+.+.         ..++.|.|.+|+.+|+| .|+|+|.
T Consensus         5 Lilq~p~~-~v~eG~~v~L~C~~~~~~p--~~~~~W~kng~~~~~~---------~~~~~l~I~~v~~~dsG-~Y~C~a~   71 (89)
T d1fnla2           5 LLLQAPRW-VFKEEDPIHLRCHSWKNTA--LHKVTYLQNGKDRKYF---------HHNSDFHIPKATLKDSG-SYFCRGL   71 (89)
T ss_dssp             EEEECSCS-EEETTCCEEEEEEECTTCC--CEEEEEEETTEEEEEE---------EECCCEEESSCCGGGCE-EEEEEEE
T ss_pred             EEEECCCC-eEccCCeEEEEEEecCCCC--CcEEEEEEccccccee---------ccccccEECccceeccc-eEEEEEE
Confidence            34556666 7899999999999876544  3678999998666321         13678999999999997 9999999


Q ss_pred             cccCCeEEecccceEEEEecC
Q psy5694         101 NKITGESQASVFQTRLSITGK  121 (129)
Q Consensus       101 N~ltge~k~S~~~~~L~V~ep  121 (129)
                      |.. |. +.|. +..|+|+|.
T Consensus        72 n~~-~~-~~S~-~v~itV~Ea   89 (89)
T d1fnla2          72 VGS-KN-VSSE-TVNITITQA   89 (89)
T ss_dssp             ETT-EE-EECC-CEEEEEECC
T ss_pred             eCC-CC-eEEe-eEEEEEEeC
Confidence            986 43 5566 889999973

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=9.1e-15  Score=97.48  Aligned_cols=94  Identities=19%  Similarity=0.201  Sum_probs=66.8

Q ss_pred             eeeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc-----cEEEeccCCCCCCc
Q psy5694          19 QKYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG-----DLYVFNATPNDGYK   93 (129)
Q Consensus        19 q~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG-----~L~I~nv~~~D~g~   93 (129)
                      |-|-.++++. .|..|+++.|.|.+.+.|.  .|.++|++++..+.... ...+....+++     .|.|.+++.+|+| 
T Consensus         4 ~~fi~~~~~~-~v~~G~~v~L~C~v~g~p~--~P~v~W~k~~~~~~~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-   78 (104)
T d2aw2a1           4 QLYIKRQSEH-SILAGDPFELECPVKYCAN--RPHVTWCKLNGTTCVKL-EDRQTSWKEEKNISFFILHFEPVLPNDNG-   78 (104)
T ss_dssp             EECCCTTEEE-EEETTSCEEEEEEEECSSS--CCEEEEEEECSSCEEEC-CSSCEEEEECSSCEEEEEEESSCCGGGCE-
T ss_pred             cEEEecCCeE-EEeCCCeEEEEEEEEeeCC--CCEEEEEecCccccccc-ceeeeeEEecCCceEEEEEEccccHHHCC-
Confidence            3455566667 8999999999999988764  25799999885543221 11222222222     3999999999997 


Q ss_pred             ceEEEeecccCCeEEecccceEEEEec
Q psy5694          94 SYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        94 ~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      .|+|.|.|.. |.. .|. ...|.|+|
T Consensus        79 ~Y~C~A~N~~-G~~-~s~-~~~l~V~e  102 (104)
T d2aw2a1          79 SYRCSANFQS-NLI-ESH-STTLYVTD  102 (104)
T ss_dssp             EEEEEEEETT-EEE-ECC-CEEEEEEC
T ss_pred             eEEEEEEcCC-CeE-EEE-EEEEEEEE
Confidence            9999999987 652 333 67888876

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.1e-14  Score=94.59  Aligned_cols=83  Identities=16%  Similarity=0.207  Sum_probs=64.3

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEE--cc---CccEEEeccCCCCCCcceEEEe
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV--LS---SGDLYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~v--lp---sG~L~I~nv~~~D~g~~Y~C~a   99 (129)
                      |.+. .|.+|++|.|.|.+.+.|+   +.++|.+|+..|...    .++.+  ..   .+.|.|++++.+|+| .|+|.|
T Consensus         3 P~~~-~v~~G~~~~l~C~v~g~p~---p~v~W~k~g~~l~~~----~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a   73 (91)
T d1rhfa1           3 PVKL-TVSQGQPVKLNCSVEGMEE---PDIQWVKDGAVVQNL----DQLYIPVSEQHWIGFLSLKSVERSDAG-RYWCQV   73 (91)
T ss_dssp             CEEE-EEETTCCEEEEEEEESCSS---CCEEEEETTEECCSS----EEEEEEEETTEEEEEEEESSCCGGGCE-EEEEEE
T ss_pred             CeeE-EEcCCCeEEEEEEEEecCC---ceEEEEEeecccccc----eeeeeeecccCceeeEEECCCCcccCE-EEEEEE
Confidence            5566 8999999999999987764   578999999887532    33332  22   346999999999997 999999


Q ss_pred             ecccCCeEEecccceEEEEe
Q psy5694         100 VNKITGESQASVFQTRLSIT  119 (129)
Q Consensus       100 ~N~ltge~k~S~~~~~L~V~  119 (129)
                      .|.. |. ..|. +++|.|+
T Consensus        74 ~N~~-G~-~~S~-~~~l~V~   90 (91)
T d1rhfa1          74 EDGG-ET-EISQ-PVWLTVE   90 (91)
T ss_dssp             SSCT-TC-EECC-CEEEEEE
T ss_pred             EECC-CC-EEEE-EEEEEEE
Confidence            9987 55 2454 7888885

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.54  E-value=6.6e-15  Score=97.39  Aligned_cols=81  Identities=21%  Similarity=0.308  Sum_probs=61.5

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEe
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQA  109 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~  109 (129)
                      .|..|+++.|.|.+.+.|.   +.++|++|+..|.+.............+.|.|.+++.+|.| .|+|.|.|.+ |+...
T Consensus        16 ~v~~G~~v~l~C~~~g~P~---p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~~-G~~~~   90 (97)
T d3dara1          16 AVPAANTVKFRCPAGGNPM---PTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG-NYTCVVENEY-GSINH   90 (97)
T ss_dssp             EECTTCCEEEECCEEEESC---CEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCE-EEEEEEEETT-EEEEE
T ss_pred             EECCCCcEEEEEEEeEECC---CEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCE-EEEEEEEECC-CEEEE
Confidence            5778999999999987774   67999999988865322222233345688999999999997 9999999998 76433


Q ss_pred             cccceEEEE
Q psy5694         110 SVFQTRLSI  118 (129)
Q Consensus       110 S~~~~~L~V  118 (129)
                         .+.|.|
T Consensus        91 ---~~~l~V   96 (97)
T d3dara1          91 ---TYHLDV   96 (97)
T ss_dssp             ---EEEEEE
T ss_pred             ---EEEEEE
Confidence               346655

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.53  E-value=3.7e-15  Score=97.56  Aligned_cols=83  Identities=19%  Similarity=0.172  Sum_probs=63.2

Q ss_pred             eeEe-eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEe
Q psy5694          21 YEIN-VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        21 y~~~-v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a   99 (129)
                      +... +++. .+.+|+++.|.|.+.+.|+   +.++|++++..+.       ......+|.|.|.+++.+|+| .|+|+|
T Consensus         7 i~~~~p~~~-~~~~G~~v~l~C~~~g~P~---p~i~W~k~~~~~~-------~~~~~~~~~L~I~~v~~~D~G-~Y~C~a   74 (91)
T d1cs6a3           7 IKAKFPADT-YALTGQMVTLECFAFGNPV---PQIKWRKLDGSQT-------SKWLSSEPLLHIQNVDFEDEG-TYECEA   74 (91)
T ss_dssp             EEECCCSEE-EEETTCCEEEECEEEEESC---CEEEEEECCSCCS-------CCCSBSSSEEEECSCCGGGCE-EEEEEE
T ss_pred             EEeeCCCcE-EEecCCcEEEEEEEEEccC---CEEEEEecccccc-------eEeeeeeeEEEeCCCCccCCE-EEEEEE
Confidence            3444 4555 8999999999999987774   5789999763321       122346789999999999997 999999


Q ss_pred             ecccCCeEEecccceEEEEe
Q psy5694         100 VNKITGESQASVFQTRLSIT  119 (129)
Q Consensus       100 ~N~ltge~k~S~~~~~L~V~  119 (129)
                      .|.+ |+..  . .+.|.|+
T Consensus        75 ~N~~-G~~~--~-~~~l~V~   90 (91)
T d1cs6a3          75 ENIK-GRDT--Y-QGRIIIH   90 (91)
T ss_dssp             EETT-EEEE--E-EEEEEEE
T ss_pred             EECC-CEEE--E-EEEEEEE
Confidence            9998 7643  3 4578775

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=8.7e-15  Score=96.14  Aligned_cols=87  Identities=18%  Similarity=0.079  Sum_probs=61.5

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEc---cCccEEEeccCCCCCCcceEEEee
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL---SSGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl---psG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      ++++. .|.+|++|.|.|.+.+.|......+.|.++...+.    ...++.+.   ..|.|.|.||+.+|+| .|+|+|.
T Consensus         7 ~~~~~-~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~   80 (96)
T d2c9aa1           7 RIQNV-EVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAP----LKEIKVTSSRRFIASFNVVNTTKRDAG-KYRCMIR   80 (96)
T ss_dssp             CCCCE-EECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCC----EEEEEEEETTEEEEEEEECSCCGGGCS-EEEEEEE
T ss_pred             ccCCE-EEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeec----CCceeEEEeecCceEEEECCCCHHHCe-EEEEEEE
Confidence            67888 99999999999999887754333334444443331    11223232   2467999999999998 9999999


Q ss_pred             cccCCeEEecccceEEEEe
Q psy5694         101 NKITGESQASVFQTRLSIT  119 (129)
Q Consensus       101 N~ltge~k~S~~~~~L~V~  119 (129)
                      |.. |+ ..|+ .|.|+|+
T Consensus        81 N~~-G~-~~s~-~a~L~Vk   96 (96)
T d2c9aa1          81 TEG-GV-GISN-YAELVVK   96 (96)
T ss_dssp             ETT-EE-EEEE-EEEEEEC
T ss_pred             eCC-Ce-EEEE-EEEEEEC
Confidence            997 66 2454 7899985

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=9.7e-16  Score=100.45  Aligned_cols=88  Identities=22%  Similarity=0.318  Sum_probs=67.5

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEe
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a   99 (129)
                      .+...+.+. .|.+|+.+.|.|.+.+.|+   +.+.|++++..+.+.   ..++....++.|.|.+++.+|.|+.|+|+|
T Consensus         4 ~i~~~~~~~-~v~~G~~v~l~C~~~g~P~---p~v~W~~~~~~~~~~---~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a   76 (92)
T d2ifga1           4 TLKVQVPNA-SVDVGDDVLLRCQVEGRGL---EQAGWILTELEQSAT---VMKSGGLPSLGLTLANVTSDLNRKNVTCWA   76 (92)
T ss_dssp             EEEEECCSS-CCBTTCCEEEEEEEECSSC---CCCCEEESCCCSSEE---ECCCCCSSEEEEEEESCCSTTTTCCEEECC
T ss_pred             EEEEeCCCE-EEeCCCEEEEeeeccCCCC---cEEEEEECCceeeee---eeeeeeccceeEEEccccccccceEEEEEE
Confidence            456677777 8999999999999988774   578999998665332   233444567789999999999986799999


Q ss_pred             ecccCCeEEecccceEEEE
Q psy5694         100 VNKITGESQASVFQTRLSI  118 (129)
Q Consensus       100 ~N~ltge~k~S~~~~~L~V  118 (129)
                      .|.+ |+...   .+.|.|
T Consensus        77 ~N~~-G~~~~---s~~l~V   91 (92)
T d2ifga1          77 ENDV-GRAEV---SVQVNV   91 (92)
T ss_dssp             EETT-EECCE---EECCCC
T ss_pred             EcCC-CEEEE---EEEEEE
Confidence            9998 77433   345554

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.6e-14  Score=96.05  Aligned_cols=77  Identities=13%  Similarity=0.159  Sum_probs=61.7

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEee
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      +++..+.. .+.+|+++.|.|.+.+.++.  +.++|++|+..|.+    ..++....++.|.|.+|+.+|+| .|+|.|.
T Consensus         9 ~~~~~~~v-~~~~G~~v~L~C~~~g~~~~--~~i~W~k~~~~l~~----~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~   80 (93)
T d1n26a1           9 QEVARGVL-TSLPGDSVTLTCPGVEPEDN--ATVHWVLRKPAAGS----HPSRWAGMGRRLLLRSVQLHDSG-NYSCYRA   80 (93)
T ss_dssp             CCCCTTEE-EECTTCCEEEECTTSCTTCC--SEEEEEEECSSSSC----CCEEEEEESSEEEECSCCGGGCE-EEEEESS
T ss_pred             EEeCCCCE-EEeCCCcEEEEEEeecCCCC--ceEEEEEccccccc----eeeEEecCCCEEEECCCChhcCE-EEEEEEC
Confidence            44544555 88999999999999876642  46899999977743    46676778899999999999998 9999999


Q ss_pred             cccCC
Q psy5694         101 NKITG  105 (129)
Q Consensus       101 N~ltg  105 (129)
                      |...+
T Consensus        81 n~~~~   85 (93)
T d1n26a1          81 GRPAG   85 (93)
T ss_dssp             SSCSC
T ss_pred             Ccccc
Confidence            87644

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=2.1e-14  Score=94.90  Aligned_cols=83  Identities=25%  Similarity=0.402  Sum_probs=63.1

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEc-cCccEEEeccCCCCCCcceEEEeecccCCeEE
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL-SSGDLYVFNATPNDGYKSYRCRTVNKITGESQ  108 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl-psG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k  108 (129)
                      .+..|++|.|.|.+.+.|.   +.++|++|+..|........++... .++.|.|.+++.+|.| .|+|+|.|.. |+..
T Consensus        16 t~~~G~~v~l~C~~~g~P~---p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~~-G~~~   90 (100)
T d1qz1a3          16 TANLGQSVTLVCDADGFPE---PTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEA-EYVCIAENKA-GEQD   90 (100)
T ss_dssp             ETTSCCCEEEEEEEEEESC---CEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCE-EEEEEEEETT-EEEE
T ss_pred             EEcCCCCEEEEEEEEEecC---CEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCE-EEEEEEEECC-CEEE
Confidence            5567999999999987774   5799999998875443333444443 4678999999999997 9999999998 7643


Q ss_pred             ecccceEEEEec
Q psy5694         109 ASVFQTRLSITG  120 (129)
Q Consensus       109 ~S~~~~~L~V~e  120 (129)
                        . .+.|.|..
T Consensus        91 --~-~~~l~V~~   99 (100)
T d1qz1a3          91 --A-SIHLKVFA   99 (100)
T ss_dssp             --E-EEEEEEEC
T ss_pred             --E-EEEEEEEE
Confidence              3 45777753

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=3.5e-14  Score=91.67  Aligned_cols=81  Identities=17%  Similarity=0.220  Sum_probs=61.6

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT  104 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~lt  104 (129)
                      +++. .|.+|+++.|.|.+.+..+  .+.++|.+++..+..     ++. ...+|.|.|++++.+|+| .|+|.|.|.. 
T Consensus         9 p~~~-~v~~G~~~~l~C~~~~~~p--~~~v~W~k~~~~~~~-----~~~-~~~~~~L~i~~v~~~d~G-~Y~C~a~N~~-   77 (89)
T d1gl4b_           9 QRSQ-SVRPGADVTFICTAKSKSP--AYTLVWTRLHNGKLP-----SRA-MDFNGILTIRNVQPSDAG-TYVCTGSNMF-   77 (89)
T ss_dssp             CCEE-EECTTCCEEEEEEEEESSS--CCEEEEEEGGGBCCC-----TTE-EEETTEEEECSCCGGGCE-EEEEEEECSS-
T ss_pred             CCeE-EEeCCCcEEEEEEccCCCC--CCEEEEecCCceeec-----ccc-EeeceEEEEecCCcccCE-EEEEEEEECC-
Confidence            3444 8899999999999975432  367999999865532     333 446899999999999997 9999999998 


Q ss_pred             CeEEecccceEEEEe
Q psy5694         105 GESQASVFQTRLSIT  119 (129)
Q Consensus       105 ge~k~S~~~~~L~V~  119 (129)
                      |..  +. .+.|.|+
T Consensus        78 G~~--~~-~~~l~V~   89 (89)
T d1gl4b_          78 AMD--QG-TATLHVQ   89 (89)
T ss_dssp             CEE--EE-EEEEEEC
T ss_pred             CEE--EE-EEEEEEC
Confidence            664  33 4577764

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=5.6e-14  Score=91.79  Aligned_cols=81  Identities=19%  Similarity=0.302  Sum_probs=63.0

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc---cEEEeccCCCCCCcceEEEee
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG---~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      .+++. .|..|++|.|.|.+. .|+   +.+.|++++..+.+.  ...+|.+..+|   .|.|.|++.+|+| .|+|+|.
T Consensus         6 ~l~~~-~v~~G~~v~l~C~v~-~p~---~~v~W~k~~~~~~~~--~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~   77 (90)
T d1x44a1           6 QLEDT-TAYCGERVELECEVS-EDD---ANVKWFKNGEEIIPG--PKSRYRIRVEGKKHILIIEGATKADAA-EYSVMTT   77 (90)
T ss_dssp             CCCCE-EEETTEEEEEEEECS-SSS---CCCEEEETTEECCCS--TTCSEEEEEETTEEEEEEEEECTTTCS-EEEEEET
T ss_pred             CCCCE-EEeCCCcEEEEEEEC-CCC---ceEEEEEeecccCCC--CCccEEEEEeCCccEEEECccccccCE-EEEEEEe
Confidence            35666 899999999999984 443   458999999777542  34567776655   6999999999998 9999998


Q ss_pred             cccCCeEEecccceEEEEec
Q psy5694         101 NKITGESQASVFQTRLSITG  120 (129)
Q Consensus       101 N~ltge~k~S~~~~~L~V~e  120 (129)
                      |.       ++ .|+|+|.+
T Consensus        78 n~-------~~-~a~l~V~~   89 (90)
T d1x44a1          78 GG-------QS-SAKLSVDL   89 (90)
T ss_dssp             TE-------EE-EEEEEEEC
T ss_pred             cc-------eE-EEEEEEEE
Confidence            73       22 56899876

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=8.4e-14  Score=91.31  Aligned_cols=85  Identities=16%  Similarity=0.172  Sum_probs=66.8

Q ss_pred             eEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeec
Q psy5694          22 EINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVN  101 (129)
Q Consensus        22 ~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N  101 (129)
                      -.++... .|.+|++++|.|.+.+.++  ...+.|++|+..+...         ..++.|.|.+++.+|+| .|+|+|.|
T Consensus         4 ilq~p~~-~V~eG~~v~L~C~~~~~~~--~~~~~w~k~g~~~~~~---------~~~~~l~i~~~~~~dsG-~Y~C~a~n   70 (89)
T d1f2qa2           4 LLQASAE-VVMEGQPLFLRCHGWRNWD--VYKVIYYKDGEALKYW---------YENHNISITNATVEDSG-TYYCTGKV   70 (89)
T ss_dssp             EEEESCS-EEETTSCEEEEEEEGGGCC--EEEEEEEETTEECCSC---------CCSSEEEESSCCGGGCE-EEEEEEEE
T ss_pred             EEeCCcC-eEeCCCEEEEEEEecCCCC--CeEEEEEEeeeccccc---------cccceEEEeeeeeecCc-EEEEEEEe
Confidence            3456666 7899999999999876543  3678999999776421         12467999999999997 99999999


Q ss_pred             ccCCeEEecccceEEEEecCC
Q psy5694         102 KITGESQASVFQTRLSITGKL  122 (129)
Q Consensus       102 ~ltge~k~S~~~~~L~V~ep~  122 (129)
                      .. |. ..|. +..|+|++++
T Consensus        71 ~~-~~-~~S~-~v~i~V~~~P   88 (89)
T d1f2qa2          71 WQ-LD-YESE-PLNITVIKAP   88 (89)
T ss_dssp             TT-EE-EECC-CEEEEEECSC
T ss_pred             CC-CC-eEee-eEEEEEEeCC
Confidence            75 44 4566 8899999875

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.1e-13  Score=90.99  Aligned_cols=91  Identities=24%  Similarity=0.284  Sum_probs=65.6

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceee--ecccCCCceEEEccCc---cEEEeccCC-CCCCcc
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI--YLNTDTGGKYVVLSSG---DLYVFNATP-NDGYKS   94 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i--~~~~~~~~ry~vlpsG---~L~I~nv~~-~D~g~~   94 (129)
                      +...+.+. .+.+|+.|.|.|.+.+.|+.  ..++|++++..+  ......+.||.+...+   .|.|.+++. +|+| .
T Consensus         5 i~~~~~~~-~v~~G~~v~l~C~v~g~P~p--~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G-~   80 (101)
T d3b5ha1           5 VKAVKSSE-HINEGETAMLVCKSESVPPV--TDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPG-Q   80 (101)
T ss_dssp             CEESCSEE-EECTTSCEEEEEECCCSSCC--CEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSE-E
T ss_pred             EEEcCCcE-EECcCCeEEEEEEEEecCCe--eEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCE-E
Confidence            44555666 88999999999999888753  368999875221  1112345778776544   699999985 6887 9


Q ss_pred             eEEEeecccCCeEEecccceEEEEe
Q psy5694          95 YRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        95 Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      |.|.|.|.+ |+...   ...|.|+
T Consensus        81 Y~C~A~N~~-G~~~~---~~~L~Vr  101 (101)
T d3b5ha1          81 YRCNGTSSK-GSDQA---IITLRVR  101 (101)
T ss_dssp             EEEEEEETT-EEEEE---EEEEEEC
T ss_pred             EEEEEEECC-CEEEE---EEEEEEC
Confidence            999999998 77432   4577764

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=1e-13  Score=91.15  Aligned_cols=88  Identities=18%  Similarity=0.346  Sum_probs=65.6

Q ss_pred             eEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-eeeecccCCCceEEEcc----CccEEEeccCCCCCCcceE
Q psy5694          22 EINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-VNIYLNTDTGGKYVVLS----SGDLYVFNATPNDGYKSYR   96 (129)
Q Consensus        22 ~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-~~i~~~~~~~~ry~vlp----sG~L~I~nv~~~D~g~~Y~   96 (129)
                      ++.|.+. .|..|.++.|.|.+.+.|+.  +.+.|++++ ..+.+   ...|+.+..    ++.|.|.+++.+|+| .|+
T Consensus         4 ~i~P~~~-~v~~G~~~~l~C~v~g~p~~--~~v~W~~~~g~~~~~---~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~   76 (97)
T d1epfa1           4 DIVPSQG-EISVGESKFFLCQVAGDAKD--KDISWFSPNGEKLSP---NQQRISVVWNDDDSSTLTIYNANIDDAG-IYK   76 (97)
T ss_dssp             EEESSSE-EEETTCCEEEEEEECCCSCC--CEEEEECTTSCEECC---BSSSEEEEEEETTEEEEEECSCCGGGCE-EEE
T ss_pred             EEECCCE-EEccCCcEEEEEEEEeccCC--CEEEEEEeeeeeeee---ccccEEEEeecCcceEEEcccCchhhce-EEE
Confidence            4556777 89999999999999887642  578999954 55543   345666542    356999999999997 999


Q ss_pred             EEeecccCCeEEecccceEEEEe
Q psy5694          97 CRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        97 C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      |+|.|.. |+. .++ ...|.|.
T Consensus        77 C~a~N~~-G~~-~~~-tv~l~V~   96 (97)
T d1epfa1          77 CVVTAED-GTQ-SEA-TVNVKIF   96 (97)
T ss_dssp             EEEEETT-TEE-EEE-EEEEEEE
T ss_pred             EEEEeCC-CcE-EEE-EEEEEEE
Confidence            9999998 663 333 4566664

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.46  E-value=2.5e-14  Score=93.57  Aligned_cols=86  Identities=16%  Similarity=0.201  Sum_probs=65.8

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEc---cCccEEEeccCCCCCCcceEE
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVL---SSGDLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vl---psG~L~I~nv~~~D~g~~Y~C   97 (129)
                      +...+++. .|.+|+++.|.|.+.+.|+   +.++|++++..|..    +.++.+.   ..+.|.|++++.+|+| .|.|
T Consensus         5 i~~~~~~~-~v~~G~~~~l~c~~~g~P~---p~v~W~~~~~~i~~----~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~c   75 (93)
T d1wiua_           5 ILTASRKI-KIKAGFTHNLEVDFIGAPD---PTATWTVGDSGAAL----APELLVDAKSSTTSIFFPSAKRADSG-NYKL   75 (93)
T ss_dssp             ECCCCCEE-EECSSBCCEEEEEEECCSS---CEEEEECSSSSCBC----STTSEEEEETTEEEEECTTBCGGGCE-EEEE
T ss_pred             EEeCCCcE-EEeCCCeEEEEEEEEEecC---CeEEEEeeeeecee----eeeeeecccccceeeccccccccccE-EEEE
Confidence            33445566 8999999999999988874   56899999977743    3444443   2446999999999997 9999


Q ss_pred             EeecccCCeEEecccceEEEEe
Q psy5694          98 RTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        98 ~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      +|.|.. |+.  +. ...|.|+
T Consensus        76 ~a~N~~-G~~--~~-~~~l~V~   93 (93)
T d1wiua_          76 KVKNEL-GED--EA-IFEVIVQ   93 (93)
T ss_dssp             EEEETT-EEE--EE-EEEEEEC
T ss_pred             EEEECC-CEE--EE-EEEEEEC
Confidence            999998 774  33 4577764

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=1.9e-13  Score=91.12  Aligned_cols=86  Identities=24%  Similarity=0.352  Sum_probs=64.2

Q ss_pred             EEEeCCeEEEEeeCCC-CCCCceeEeEEeecceeeeccc------CCCceEEEc-cCccEEEeccCCCCCCcceEEEeec
Q psy5694          30 NVILGNTAVLRCQIPS-YMSEYIIVTSWIQDDVNIYLNT------DTGGKYVVL-SSGDLYVFNATPNDGYKSYRCRTVN  101 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~-~~~~~v~v~sW~~d~~~i~~~~------~~~~ry~vl-psG~L~I~nv~~~D~g~~Y~C~a~N  101 (129)
                      .|..|+++.|.|.+.. .|   .+.++|++|+..|....      .....+... .++.|.|.+++.+|+| .|+|+|.|
T Consensus        13 ~v~~G~~v~L~C~~~~g~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G-~Y~C~a~N   88 (110)
T d1f97a2          13 SVTIGNRAVLTCSEHDGSP---PSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSG-EYYCQAQN   88 (110)
T ss_dssp             EEETTSCEEEEEECSCCBS---CCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCE-EEEEEEEC
T ss_pred             EEecCCeEEEEEEeecCCC---CCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCE-EEEEEEEE
Confidence            5788999999999864 45   36789999997664321      112334443 4778999999999997 99999999


Q ss_pred             ccCCeEEecccceEEEEecC
Q psy5694         102 KITGESQASVFQTRLSITGK  121 (129)
Q Consensus       102 ~ltge~k~S~~~~~L~V~ep  121 (129)
                      .+ |+...|. ..+|.|.+-
T Consensus        89 ~~-G~~~~s~-~v~l~V~~l  106 (110)
T d1f97a2          89 GY-GTAMRSE-AAHMDAVEL  106 (110)
T ss_dssp             SS-SCCEECC-CEEEEEESS
T ss_pred             CC-CcEEEEE-EEEEEEEec
Confidence            98 7656665 678888764

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.3e-13  Score=89.64  Aligned_cols=87  Identities=15%  Similarity=0.135  Sum_probs=63.8

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEee
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      .++.|.+.+.+..|+++.|.|.+.+.|+   +.++|.+++..+.    .+..+....++.|.|++++.+|+| .|+|+|.
T Consensus         3 i~i~P~~~~~~~~G~~v~l~C~~~g~p~---p~i~W~~~~~~~~----~~~~~~~~~~~~L~I~~v~~~d~G-~Y~C~a~   74 (90)
T d1vcaa2           3 IETTPESRYLAQIGDSVSLTCSTTGCES---PFFSWRTQIDSPL----NGKVTNEGTTSTLTMNPVSFGNEH-SYLCTAT   74 (90)
T ss_dssp             EEEESSSEEEEETTSCEEEEEEEESCSS---CEEEEEETTCCCC----SSEEEEETTEEEEEESSCCGGGCS-EEEEEEE
T ss_pred             EEEECCCcEEEECCCEEEEEEeccCCCC---ceEEEEecCccce----eeeeeeecCCcEEEEecccccccc-eEEEEEE
Confidence            3555666635668999999999988774   6789999774432    223444556788999999999998 9999999


Q ss_pred             cccCCeEEecccceEEEEe
Q psy5694         101 NKITGESQASVFQTRLSIT  119 (129)
Q Consensus       101 N~ltge~k~S~~~~~L~V~  119 (129)
                      |.. |+.  +. ...|.|.
T Consensus        75 N~~-g~~--~~-~~~v~V~   89 (90)
T d1vcaa2          75 CES-RKL--EK-GIQVEIY   89 (90)
T ss_dssp             ETT-EEE--EE-EEEEEEE
T ss_pred             eCC-CEE--EE-EEEEEEE
Confidence            997 553  32 4466653

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.46  E-value=2.7e-14  Score=94.02  Aligned_cols=87  Identities=16%  Similarity=0.281  Sum_probs=65.6

Q ss_pred             eeEeeeeeeEEEeC---CeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEE
Q psy5694          21 YEINVNYEHNVILG---NTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        21 y~~~v~~~~~V~~G---ntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C   97 (129)
                      |..++.+. .+.+|   ++++|.|.+.+.|+   +.+.|++|+..|...  .+.++....+..|.|.+++.+|+| .|+|
T Consensus         7 f~~~P~~~-~~~~g~~~~~v~l~C~~~g~P~---p~v~W~~ng~~i~~~--~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C   79 (97)
T d1cs6a1           7 FEEQPAHT-LFPEGSAEEKVTLTCRARANPP---ATYRWKMNGTELKMG--PDSRYRLVAGDLVISNPVKAKDAG-SYQC   79 (97)
T ss_dssp             EEECCCCE-EEETTCSCCEEEECCEEEEESC---CEEEEEETTEECCCS--TTSSEEEETTEEEEESCCHHHHCE-EEEE
T ss_pred             EEEeCCCE-EEECccCCCeEEEEEEEEEeCC---CEEEEEEeeeeccCC--CCceEEeeeeeEEEEecccccCCE-EEEE
Confidence            55667766 66666   78999999987764   678999999887542  345565555666788889999997 9999


Q ss_pred             EeecccCCeEEecccceEEE
Q psy5694          98 RTVNKITGESQASVFQTRLS  117 (129)
Q Consensus        98 ~a~N~ltge~k~S~~~~~L~  117 (129)
                      +|.|.+ |+. .|. .++|.
T Consensus        80 ~a~N~~-G~~-~S~-~a~L~   96 (97)
T d1cs6a1          80 VATNAR-GTV-VSR-EASLR   96 (97)
T ss_dssp             EEEETT-EEE-ECC-CEEEE
T ss_pred             EEEECC-CEE-EEE-EEEEe
Confidence            999998 763 354 56664

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.46  E-value=7e-14  Score=92.31  Aligned_cols=83  Identities=16%  Similarity=0.241  Sum_probs=62.2

Q ss_pred             eeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEE---ccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          26 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV---LSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        26 ~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~v---lpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      ++. .+..|+++.|.|.+.+.|+   +.+.|++|+..|...  ...++..   ...+.|.|.+++.+|+| .|+|.|.|.
T Consensus        11 ~~~-~~~~G~~v~l~C~~~g~P~---~~v~W~k~g~~i~~~--~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~N~   83 (97)
T d1biha3          11 KDM-MAKAGDVTMIYCMYGSNPM---GYPNYFKNGKDVNGN--PEDRITRHNRTSGKRLLFKTTLPEDEG-VYTCEVDNG   83 (97)
T ss_dssp             CSE-EEETTSCEEEEEEEECSSC---CCCEEEETTEECCCC--TTSSEESCSSSTTSEEEESSCCGGGCE-EEEEEECCS
T ss_pred             CCE-EEecCCeEEEEEEEEEecC---CEEEEEEeeeecccc--ceeeeeeeeecCCCEEEEEeccccccE-EEEEEEEEC
Confidence            455 8999999999999988774   568999999877432  2334433   23567999999999997 999999999


Q ss_pred             cCCeEEecccceEEEE
Q psy5694         103 ITGESQASVFQTRLSI  118 (129)
Q Consensus       103 ltge~k~S~~~~~L~V  118 (129)
                      + |+. .+. ..+|.|
T Consensus        84 ~-G~~-~s~-s~~L~V   96 (97)
T d1biha3          84 V-GKP-QKH-SLKLTV   96 (97)
T ss_dssp             S-SSC-EEE-EEEEEE
T ss_pred             C-CcE-EEE-EEEEEE
Confidence            8 552 232 456665

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.45  E-value=9.3e-14  Score=94.88  Aligned_cols=74  Identities=26%  Similarity=0.359  Sum_probs=58.5

Q ss_pred             EEEeCCeEEEEeeCC-CCCCCceeEeEEeecceeeecc---cCCCceEEEccCccEEEeccCCCCCC--cceEEEeeccc
Q psy5694          30 NVILGNTAVLRCQIP-SYMSEYIIVTSWIQDDVNIYLN---TDTGGKYVVLSSGDLYVFNATPNDGY--KSYRCRTVNKI  103 (129)
Q Consensus        30 ~V~~GntAvL~C~vp-~~~~~~v~v~sW~~d~~~i~~~---~~~~~ry~vlpsG~L~I~nv~~~D~g--~~Y~C~a~N~l  103 (129)
                      .+++|+++.|.|.++ +.|   .+.+.|++++..+.+.   .....++.+.++|.|.|.||+.+|+|  |.|.|+|.|.+
T Consensus        13 t~~EG~~~~L~C~v~~G~P---~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~   89 (111)
T d1biha2          13 TPIEGRPFQLDCVLPNAYP---KPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAA   89 (111)
T ss_dssp             CCBTTEEEEECCCCCEEES---CCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTT
T ss_pred             cccCCCeEEEEEEcccCCC---CCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCC
Confidence            678999999999985 455   3679999998544322   12346788899999999999999986  36999999998


Q ss_pred             CCe
Q psy5694         104 TGE  106 (129)
Q Consensus       104 tge  106 (129)
                      +.+
T Consensus        90 g~~   92 (111)
T d1biha2          90 VDE   92 (111)
T ss_dssp             CSS
T ss_pred             CCc
Confidence            544

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.6e-13  Score=93.05  Aligned_cols=84  Identities=13%  Similarity=0.158  Sum_probs=62.5

Q ss_pred             EEEeCCeEEEEee------CCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          30 NVILGNTAVLRCQ------IPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        30 ~V~~GntAvL~C~------vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      .+..|..+.|.|.      +.+.+   .+.++|.+|+..|..    +++..+..+|.|+|.+++.+|+| .|+|+|.|..
T Consensus        10 ~~~~g~~~~l~Cp~~~~~~~~~~p---~P~i~W~kdg~~l~~----~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~n~~   81 (103)
T d1iray2          10 KLPVAGDGGLVCPYMEFFKNENNE---LPKLQWYKDCKPLLL----DNIHFSGVKDRLIVMNVAEKHRG-NYTCHASYTY   81 (103)
T ss_dssp             EEESSSCEEEECTTGGGGCBTTTB---CCCCEEEETTEECCC----CSSSEEEETTEEEESSCCGGGCE-EEEEEEEEEE
T ss_pred             EEecCCCEEEEcCCccccccCCCC---CCEEEEEECCccccC----CCcEEEecCCEEEEcccccccCc-EEEEEEEECc
Confidence            5788999999993      33333   578999999988853    34555667899999999999997 9999999999


Q ss_pred             CCeEEecccceEEEEecC
Q psy5694         104 TGESQASVFQTRLSITGK  121 (129)
Q Consensus       104 tge~k~S~~~~~L~V~ep  121 (129)
                      +|....-+....|.|.+.
T Consensus        82 ~g~~~~vt~~i~~~v~~~   99 (103)
T d1iray2          82 LGKQYPITRVIEFITLEE   99 (103)
T ss_dssp             TTEEEEEEEEEEEEEECC
T ss_pred             CCEEEEEEEEEEEEECCC
Confidence            776433222445555444

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.44  E-value=2.2e-14  Score=94.01  Aligned_cols=79  Identities=13%  Similarity=0.158  Sum_probs=63.9

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCcc---EEEeccCCCCCCcceEEEee
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD---LYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~---L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      ..++. .|.+|++|+|.|.+. .|   .+.+.|++|+..|.+    ++||.+...|.   |.|.+++.+|+| .|+|.|.
T Consensus         7 ~l~d~-~v~~G~~~~~~c~vs-~p---~~~v~W~k~g~~i~~----~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~c~a~   76 (89)
T d1tiua_           7 PLYGV-EVFVGETAHFEIELS-EP---DVHGQWKLKGQPLTA----SPDCEIIEDGKKHILILHNCQLGMTG-EVSFQAA   76 (89)
T ss_dssp             CCCCE-EEETTSCCCEEEBCS-SS---SCCCBCCSSSCCCCS----SSSCEEEECSSCEEEECCSCCSCCCS-EECCBCS
T ss_pred             CCcCE-EEeCCCcEEEEEEEC-CC---CcEEEEEEeeeeccc----ceeEEEEeeceeEEEEEcCCChhcCE-EEEEEEC
Confidence            34566 899999999999983 44   256899999988854    57888887776   999999999998 9999997


Q ss_pred             cccCCeEEecccceEEEEec
Q psy5694         101 NKITGESQASVFQTRLSITG  120 (129)
Q Consensus       101 N~ltge~k~S~~~~~L~V~e  120 (129)
                      |.       ++ .++|.|.|
T Consensus        77 n~-------~~-sa~l~V~e   88 (89)
T d1tiua_          77 NA-------KS-AANLKVKE   88 (89)
T ss_dssp             SC-------BC-CEEEEEEC
T ss_pred             ce-------EE-EEEEEEEE
Confidence            74       22 56899876

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.44  E-value=7.1e-14  Score=92.53  Aligned_cols=85  Identities=22%  Similarity=0.260  Sum_probs=58.2

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCc---------eEEE---ccCccEEEeccCCCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGG---------KYVV---LSSGDLYVFNATPNDGY   92 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~---------ry~v---lpsG~L~I~nv~~~D~g   92 (129)
                      +++. .|..|++|.|.|.+.+.|+   +.+.|++++.........++         ....   ...+.|.|.|++.+|+|
T Consensus        12 P~~~-tv~~G~~v~l~C~v~g~P~---p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G   87 (109)
T d2fdbp2          12 PANA-STVVGGDVEFVCKVYSDAQ---PHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAG   87 (109)
T ss_dssp             SCCE-EECTTCCEEEEEEEECSSC---CEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCGGGCE
T ss_pred             CCCE-EEecCCcEEEEEEEEEcCC---CeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCHHHCe
Confidence            5677 9999999999999998774   67999987632211000000         1100   13467999999999997


Q ss_pred             cceEEEeecccCCeEEecccceEEEE
Q psy5694          93 KSYRCRTVNKITGESQASVFQTRLSI  118 (129)
Q Consensus        93 ~~Y~C~a~N~ltge~k~S~~~~~L~V  118 (129)
                       .|.|.|.|.+ |+...   .+.|+|
T Consensus        88 -~Y~C~a~N~~-G~~~~---~~~L~V  108 (109)
T d2fdbp2          88 -EYTCLAGNSI-GISFH---SAWLTV  108 (109)
T ss_dssp             -EEEEEEECSS-CEEEE---EEEEEE
T ss_pred             -EEEEEEEECC-CEEEE---EEEEEE
Confidence             9999999998 77543   347765

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.3e-13  Score=92.50  Aligned_cols=89  Identities=16%  Similarity=0.209  Sum_probs=65.2

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEe
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQA  109 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~  109 (129)
                      .+.+|++++|+|.+....+  .+.+.|++++..+........|+. ..+|.|.|.+++.+|+| .|+|+|.|.. |..+.
T Consensus        13 ~~~~~e~~~l~C~~~~~~~--~~~i~W~k~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G-~Y~C~a~N~~-g~~~~   87 (101)
T d1iray1          13 VSSANEIDVRPCPLNPNEH--KGTITWYKDDSKTPVSTEQASRIH-QHKEKLWFVPAKVEDSG-HYYCVVRNSS-YCLRI   87 (101)
T ss_dssp             EEETTSCEEECCCCCGGGC--SSEEEEECSSTTSBCCCCTTSSEE-EETTEEEETTCCGGGCE-EEEEEEEETT-EEEEE
T ss_pred             EEeCCCeEEEEeeCCCCCC--CceEEEEECCcccccccccceEEe-ccCCEEEeccceecCCE-EEEEEEECCC-CeEEE
Confidence            5677999999998854332  357999998844432212334443 35789999999999997 9999999986 77554


Q ss_pred             cccceEEEEecCCCCCC
Q psy5694         110 SVFQTRLSITGKLKSLC  126 (129)
Q Consensus       110 S~~~~~L~V~ep~~~~~  126 (129)
                      +   ..|.|.+..+..|
T Consensus        88 ~---~~L~V~~~~p~~c  101 (101)
T d1iray1          88 K---ISAKFVENEPNLC  101 (101)
T ss_dssp             E---EEEEEECCCTTCS
T ss_pred             E---EEEEEEeCCCCCC
Confidence            4   4888888766554

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1e-13  Score=93.16  Aligned_cols=87  Identities=20%  Similarity=0.192  Sum_probs=63.4

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeeccc-------------------------CCCceEEEccC-
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT-------------------------DTGGKYVVLSS-   78 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~-------------------------~~~~ry~vlps-   78 (129)
                      +++. .|..|+++.|.|.+.+.|.   +.+.|++++..+....                         ..++|+.+..+ 
T Consensus        16 ~~~v-~v~~G~~v~L~C~v~G~P~---p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   91 (130)
T d1gxea_          16 PDTI-VVVAGNKLRLDVPISGDPA---PTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTK   91 (130)
T ss_dssp             CCEE-EESSSSCCCCEEECCSBSC---CEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEET
T ss_pred             CCCE-EEEcCCeEEEEEEEEEecC---CeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECC
Confidence            3344 8999999999999998874   6799999875543210                         01345655432 


Q ss_pred             --ccEEEeccCCCCCCcceEEEeecccCCeEEecccceEEEEec
Q psy5694          79 --GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        79 --G~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                        ..|.|.|++.+|+| .|.|+|.|.+ |+...   ..+|.|.+
T Consensus        92 ~~~~L~I~~v~~~D~G-~Y~C~a~N~~-G~~~~---~~~l~V~d  130 (130)
T d1gxea_          92 DRSIFTVEGAEKEDEG-VYTVTVKNPV-GEDQV---NLTVKVID  130 (130)
T ss_dssp             TEEEEECSCCCTTTCE-EEEEEEECSS-CEEEE---EEEEEECC
T ss_pred             CEEEEEECcCChhcCE-EEEEEEEECC-CEEEE---EEEEEEEC
Confidence              24999999999997 9999999998 77433   44777753

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.3e-13  Score=88.73  Aligned_cols=83  Identities=11%  Similarity=0.119  Sum_probs=64.3

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEe
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a   99 (129)
                      .|..++++. .|.+|.++.|.|.+.+.|.+  ..++|++|+..|...          ..+.+.|..+..+|+| .|+|.|
T Consensus         3 ~f~~~P~~~-~v~~G~~~~l~C~~~g~P~P--~~i~W~k~g~~i~~~----------~~~~~~l~~~~~~d~G-~Y~C~A   68 (85)
T d1rhfa2           3 FFTVEPKDL-AVPPNAPFQLSCEAVGPPEP--VTIVWWRGTTKIGGP----------APSPSVLNVTGVTQST-MFSCEA   68 (85)
T ss_dssp             EEEECCCCE-EECTTCCEEEEEEEECSSSC--CEEEEEETTEECSCS----------EESSEEEEECCCSSCE-EEEEEE
T ss_pred             cEEEeCCcE-EEcCCCEEEEEEEEecCCcc--eEEEEEECCEECCCC----------CCcceEEecCCccccE-EEEEEE
Confidence            477788888 99999999999999887742  268999999777421          1245667777788997 999999


Q ss_pred             ecccCCeEEecccceEEEEe
Q psy5694         100 VNKITGESQASVFQTRLSIT  119 (129)
Q Consensus       100 ~N~ltge~k~S~~~~~L~V~  119 (129)
                      .|.. |. ..|. .+.|.|+
T Consensus        69 ~N~~-G~-~~S~-~~~v~Vk   85 (85)
T d1rhfa2          69 HNLK-GL-ASSR-TATVHLQ   85 (85)
T ss_dssp             EETT-EE-EECC-CEEEEEC
T ss_pred             EcCC-Cc-EEEE-EEEEEEC
Confidence            9998 65 3454 6788774

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1e-14  Score=97.90  Aligned_cols=97  Identities=23%  Similarity=0.305  Sum_probs=71.9

Q ss_pred             EeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc----Cc---cEEEeccCCCCCCcce
Q psy5694          23 INVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS----SG---DLYVFNATPNDGYKSY   95 (129)
Q Consensus        23 ~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp----sG---~L~I~nv~~~D~g~~Y   95 (129)
                      ..+++. .+.+|+.|.|.|.+.+.++.  +.+.|++++..|...  ...+|.+..    +|   .|.|.+++.+|.+|.|
T Consensus        11 ~~~~~~-~~~~G~~~~l~C~v~~~~p~--~~v~W~~~~~~i~~~--~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y   85 (115)
T d2crya1          11 SSTQTQ-HALHGEKGQIKCFIRSTPPP--DRIAWSWKENVLESG--TSGRYTVETISTEEGVISTLTISNIVRADFQTIY   85 (115)
T ss_dssp             EEECCC-CCCTTSCCCCCEEECCSSCC--SEEEEESSSCEECSE--EETTEEEEEEEETTEEEEEEECTTCCHHHHHSCE
T ss_pred             ecCCCE-EEecCCEEEEEEEeecCCCe--eEEEEeeeeeeEeee--eeeeEeeeeeccccCcEEEEEEeccchhcCCeEE
Confidence            345555 88999999999999876543  468999999777432  235565532    22   4999999999943399


Q ss_pred             EEEeecccCCeEEecccceEEEEecCCCCCCCC
Q psy5694          96 RCRTVNKITGESQASVFQTRLSITGKLKSLCTS  128 (129)
Q Consensus        96 ~C~a~N~ltge~k~S~~~~~L~V~ep~~~~~~~  128 (129)
                      +|.|.|.+ |+.  +. ..+|.|+.+....|++
T Consensus        86 ~C~A~N~~-G~~--~~-~~~L~V~~~~~~~P~~  114 (115)
T d2crya1          86 NCTAWNSF-GSD--TE-IIRLKEQGSEMSGPSS  114 (115)
T ss_dssp             EEEEECSS-CEE--EE-EECCCCSCSSCCCCCC
T ss_pred             EEEEEECC-CeE--EE-EEEEEEECCCCCCCCC
Confidence            99999999 764  33 5588888877777765

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.3e-13  Score=87.90  Aligned_cols=81  Identities=11%  Similarity=0.175  Sum_probs=61.3

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEee
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      |.+.+...+.|++|+++.|.|.+.+.|+   |.++|.+++..+           +..++.|.|.+++.+|+| .|+|.|.
T Consensus         1 F~it~~~~~~v~~G~~~~L~C~~~g~p~---P~i~W~~~~~~~-----------~~~~~~l~i~~v~~~DsG-~Y~C~a~   65 (84)
T d2nxyb2           1 FGLTANSDTHLLQGQSLTLTLESPPGSS---PSVQCRSPRGKN-----------IQGGKTLSVSQLELQDSG-TWTCTVL   65 (84)
T ss_dssp             EEEEESCSSCEETTCCEEEEEECCTTCC---CEEEEECTTCCE-----------EEESSEEEESSCCGGGCE-EEEEEEE
T ss_pred             CeEcCCCCeEEECCCeEEEEEEeEcCCc---hheEEEeecccc-----------eeeeeeeeeeeccccccc-EEEEEEE
Confidence            4455554447999999999999998874   789999987332           234567999999999997 9999999


Q ss_pred             cccCCeEEecccceEEEEec
Q psy5694         101 NKITGESQASVFQTRLSITG  120 (129)
Q Consensus       101 N~ltge~k~S~~~~~L~V~e  120 (129)
                      |.. |....   ...|.|..
T Consensus        66 N~~-g~~~~---~~~v~V~~   81 (84)
T d2nxyb2          66 QNQ-KKVEF---KIDIVVLA   81 (84)
T ss_dssp             ETT-EEEEE---EEEECEEC
T ss_pred             eCC-CEEEE---EEEEEEEe
Confidence            997 55322   34666653

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.2e-13  Score=91.04  Aligned_cols=85  Identities=24%  Similarity=0.405  Sum_probs=62.6

Q ss_pred             EEEeCCeEEEEeeCCC-CCCCceeEeEEeecceeeecccC-----CCceEEE-ccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          30 NVILGNTAVLRCQIPS-YMSEYIIVTSWIQDDVNIYLNTD-----TGGKYVV-LSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~-~~~~~v~v~sW~~d~~~i~~~~~-----~~~ry~v-lpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      .|..|+.+.|.|.+.+ .|   .+.+.|++++..|.....     .+.++.. ..++.|.|.+++.+|.| .|+|+|.|.
T Consensus        13 ~v~~G~~v~l~C~~~~g~p---~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G-~Y~C~a~N~   88 (104)
T d1nbqa2          13 SATIGNRAVLTCSEQDGSP---PSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTG-EYSCEARNG   88 (104)
T ss_dssp             EEETTSCEEECCCCCSCBS---CCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCC-CEEEEEECS
T ss_pred             EEecCCcEEEEEEeecCCC---CCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCc-EEEEEEEEC
Confidence            6788999999999864 44   367999999976643211     1222222 34789999999999998 999999999


Q ss_pred             cCCeEEecccceEEEEec
Q psy5694         103 ITGESQASVFQTRLSITG  120 (129)
Q Consensus       103 ltge~k~S~~~~~L~V~e  120 (129)
                      + |+...|. ..+|.|.|
T Consensus        89 ~-G~~~~s~-~v~v~v~e  104 (104)
T d1nbqa2          89 Y-GTPMTSN-AVRMEAVE  104 (104)
T ss_dssp             S-SCCEECC-CBCCEEEC
T ss_pred             C-CceEEEE-EEEEEEEC
Confidence            8 7766666 66776654

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.7e-13  Score=89.20  Aligned_cols=84  Identities=19%  Similarity=0.370  Sum_probs=61.8

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCc---cEEEeccCCCCCCcceEE
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSG---DLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG---~L~I~nv~~~D~g~~Y~C   97 (129)
                      |.-...+.+.|..|..|.|.|.+. .|+   +.+.|++|+..|.+   .+.+|.+...|   .|.|.|++.+|+| .|+|
T Consensus         8 f~~~l~~~~~v~~G~~v~l~c~v~-~p~---~~v~W~k~g~~i~~---~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~c   79 (94)
T d1pd6a_           8 FQKKLEPAYQVSKGHKIRLTVELA-DHD---AEVKWLKNGQEIQM---SGSKYIFESIGAKRTLTISQCSLADDA-AYQC   79 (94)
T ss_dssp             CSEECCSEEEEETTSCEEEEEECS-SSS---SCCEEEESSSEECC---CSSSSEEEEETTEEEEEECSCSSSSCE-EEEE
T ss_pred             EEEeCCCCEEECcCCeEEEEEEEC-CCC---ceEEEEEcCcccee---eeeeEeeeccCCeEEeecCCCCceecE-EEEE
Confidence            333444443688999999999984 342   46899999988854   24566665433   4999999999997 9999


Q ss_pred             EeecccCCeEEecccceEEEEec
Q psy5694          98 RTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        98 ~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      .|.|.       +. .++|.|.|
T Consensus        80 ~a~n~-------~~-s~~l~V~E   94 (94)
T d1pd6a_          80 VVGGE-------KC-STELFVKE   94 (94)
T ss_dssp             EETTE-------EE-CCEEEEEC
T ss_pred             EEeeE-------EE-EEEEEEEC
Confidence            99773       22 46899876

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=9.3e-13  Score=87.84  Aligned_cols=88  Identities=19%  Similarity=0.175  Sum_probs=65.8

Q ss_pred             eEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeee---cc---cCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIY---LN---TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        29 ~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~---~~---~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      |+...|.++.|.|...+... -+..+.|.+++..|.   +.   ...++|+.+.++|.|.|+|++.+|+| .|+|.+.|.
T Consensus         5 V~G~~G~sV~L~~~~~~~~~-~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG-~Y~c~v~~~   82 (98)
T d1hnga1           5 VWGALGHGINLNIPNFQMTD-DIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSG-TYNVTVYST   82 (98)
T ss_dssp             EEEETTSCEEECCTTCCCCT-TEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCE-EEEEEEEET
T ss_pred             EEEecCCCEEEECCCCCCcc-chheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCE-EEEEEEEeC
Confidence            47889999999996433222 267899999885542   11   22367899999999999999999998 999999987


Q ss_pred             cCCeEEecccceEEEEec
Q psy5694         103 ITGESQASVFQTRLSITG  120 (129)
Q Consensus       103 ltge~k~S~~~~~L~V~e  120 (129)
                      - |....+. ...|.|.|
T Consensus        83 ~-g~~~~~~-~~~L~V~E   98 (98)
T d1hnga1          83 N-GTRILNK-ALDLRILE   98 (98)
T ss_dssp             T-CCEEEEE-EEEEEEEC
T ss_pred             C-CCEEEEE-EEEEEEEC
Confidence            5 6655554 55677754

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=6.2e-13  Score=87.47  Aligned_cols=76  Identities=18%  Similarity=0.159  Sum_probs=57.0

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEe
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQA  109 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~  109 (129)
                      .+..|.++.|.|.+.+..+  .+.++|.+++..+      +.+.....++.|.|.|++.+|+| .|+|+|.|.. |.  .
T Consensus        14 ~~~~G~~~~l~C~~~~g~p--~p~v~W~~~~~~~------~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~Asn~~-g~--~   81 (90)
T d1gsma1          14 AVALGASRQLTCRLACADR--GASVQWRGLDTSL------GAVQSDTGRSVLTVRNASLSAAG-TRVCVGSCGG-RT--F   81 (90)
T ss_dssp             EEETTCCEEEEEEECCSST--TCEEEEESSTTTT------CCEEEESSEEEEEECSCCGGGCE-EEEEEEEETT-EE--E
T ss_pred             EEEeCCcEEEEEEecCCCC--ccEEEEEEeeeee------eeeeccCceeeEEcCccChhhCC-cEEEEEEeCC-Cc--E
Confidence            6778999999999864322  3679999977544      23444556788999999999997 9999999976 43  2


Q ss_pred             cccceEEEE
Q psy5694         110 SVFQTRLSI  118 (129)
Q Consensus       110 S~~~~~L~V  118 (129)
                      +. ..+|.|
T Consensus        82 ~~-s~~l~V   89 (90)
T d1gsma1          82 QH-TVQLLV   89 (90)
T ss_dssp             EE-EEEEEE
T ss_pred             EE-EEEEEE
Confidence            32 447766

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.3e-13  Score=89.61  Aligned_cols=75  Identities=16%  Similarity=0.213  Sum_probs=55.9

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeeccc--------CCCceEEEccCccEEEeccCCCCCCcceEEEeec
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT--------DTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVN  101 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~--------~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N  101 (129)
                      .|.+|+++.|.|.+.+.|.   +.+.|++++..+....        ...+|+ .+.++.|.|.|++.+|+| .|+|.|.|
T Consensus        15 ~v~~g~~v~L~C~~~g~p~---p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G-~Y~C~a~n   89 (105)
T d1nbqa1          15 RIPENNPVKLSCAYSGFSS---PRVEWKFDQGDTTRLVCYNNKITASYEDRV-TFLPTGITFKSVTREDTG-TYTCMVSE   89 (105)
T ss_dssp             CEETTCCCEEECEEESCSS---EEEEEEEEETTEEEESEETTEECTTTTTTC-EEETTEEECSCCCTTSCS-EEEEEEEE
T ss_pred             EEeCCCeEEEEEEeCCCCC---CeeEEEeeeeceeeeeeccceeecccccee-eecCceEEEeccccccee-eEEEEEEE
Confidence            7899999999999988774   6789999874332110        112233 345688999999999998 99999999


Q ss_pred             ccCCeEEec
Q psy5694         102 KITGESQAS  110 (129)
Q Consensus       102 ~ltge~k~S  110 (129)
                      .. |....+
T Consensus        90 ~~-G~~~~~   97 (105)
T d1nbqa1          90 EG-GNSYGE   97 (105)
T ss_dssp             TT-SSCEEC
T ss_pred             CC-CCEEEE
Confidence            98 664433

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=6.6e-13  Score=87.45  Aligned_cols=83  Identities=18%  Similarity=0.267  Sum_probs=58.0

Q ss_pred             eEEEeCCeEEEEeeCCCCCCCceeEeEEeeccee-e---ecc----cCCCceEEEccCccEEEeccCCCCCCcceEEEee
Q psy5694          29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVN-I---YLN----TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        29 ~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~-i---~~~----~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      +.|.+|++|.|.|.+.+.+.   +.+.|.+++.. .   ...    .....|+ .+-++.|.|.||+.+|+| .|+|.|.
T Consensus        11 v~v~~G~~v~l~C~~~g~p~---p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~tL~I~~v~~~D~G-~Y~C~a~   85 (102)
T d1f97a1          11 VQVPENESIKLTCTYSGFSS---PRVEWKFVQGSTTALVCYNSQITAPYADRV-TFSSSGITFSSVTRKDNG-EYTCMVS   85 (102)
T ss_dssp             EEEETTCCEEEECEEESCSS---EEEEEEEEETTEEEEEEETTEECGGGTTTE-EEETTEEEESCCCGGGCE-EEEEEEE
T ss_pred             EEEeCCCEEEEEEEcCCCCC---CeEEEEeccccceeeeccccccccceeeEE-EecCCEEEEeECCccCCE-EEEEEEE
Confidence            37899999999999987764   57899986622 1   111    0112233 335678999999999997 9999999


Q ss_pred             cccCCeEEecccceEEEE
Q psy5694         101 NKITGESQASVFQTRLSI  118 (129)
Q Consensus       101 N~ltge~k~S~~~~~L~V  118 (129)
                      |.. |+...+. ...|+|
T Consensus        86 n~~-g~~~~~~-~v~v~V  101 (102)
T d1f97a1          86 EEG-GQNYGEV-SIHLTV  101 (102)
T ss_dssp             ETT-SSSEEEE-EEEEEE
T ss_pred             ECC-CCEEEEE-EEEEEE
Confidence            998 6644443 334443

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.30  E-value=3.7e-12  Score=82.36  Aligned_cols=77  Identities=21%  Similarity=0.329  Sum_probs=61.3

Q ss_pred             eEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeec
Q psy5694          22 EINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVN  101 (129)
Q Consensus        22 ~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N  101 (129)
                      .+++... .|.+|+++.|.|.+.+.++.  ..+.|.+|+..+..           .++.|.|.+++.+|+| .|+|+|.|
T Consensus         8 ~~~P~~~-~v~~G~~v~L~C~~~~~~~~--~~~~w~~~g~~~~~-----------~~~~l~i~~v~~~dsG-~Y~C~a~n   72 (85)
T d2fcba1           8 KLEPQWI-NVLQEDSVTLTCRGTHSPES--DSIQWFHNGNLIPT-----------HTQPSYRFKANNNDSG-EYTCQTGQ   72 (85)
T ss_dssp             EEESCCS-EEETTCEEEEEEECSSCCCT--TCCEEEETTEECTT-----------CCSSEEEEECCGGGCE-EEEEECTT
T ss_pred             EECCCCe-EEcCCCeEEEEEEEeeccce--eEEEeecccccccc-----------cccceEEeeccccCCc-EEEEECCC
Confidence            4566767 89999999999999887754  34689999866632           2578999999999997 99999998


Q ss_pred             ccCCeEEecccceEEEEe
Q psy5694         102 KITGESQASVFQTRLSIT  119 (129)
Q Consensus       102 ~ltge~k~S~~~~~L~V~  119 (129)
                      ..     .|+ +.+|.|.
T Consensus        73 s~-----~S~-~v~l~V~   84 (85)
T d2fcba1          73 TS-----LSD-PVHLTVL   84 (85)
T ss_dssp             SB-----CCC-CEEEEEE
T ss_pred             Cc-----ccc-cEEEEEE
Confidence            63     355 7788885

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.6e-12  Score=86.36  Aligned_cols=92  Identities=13%  Similarity=0.183  Sum_probs=62.7

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEe
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a   99 (129)
                      ..+..+... .|..|..+.|.|.+.+..+.....++|++++..|........    ..+..|.|+.+..+|+| .|+|+|
T Consensus         6 ~v~i~p~~~-~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~~~----~~~s~l~i~~~~~dd~g-~ytC~A   79 (103)
T d1iama1           6 RVELAPLPS-WQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGE----PAEVTTTVLVRRDHHGA-QFSCRT   79 (103)
T ss_dssp             EEEECCCCS-EECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTT----TEEEEEEEECCSSCSSC-EEEEEE
T ss_pred             ceEEeCCCc-eEeCCCEEEEEEEecCCCCCCceEEEEccccccccccccccc----cceEEEEEeeehhHCCC-EEEEEE
Confidence            345566666 788999999999998764433456899999988754211111    12456999988888876 999999


Q ss_pred             ecccCCeEEecccceEEEEecC
Q psy5694         100 VNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus       100 ~N~ltge~k~S~~~~~L~V~ep  121 (129)
                      .|.+ |+.  +. ...+.+++|
T Consensus        80 ~n~~-g~~--~~-~~~~~~s~p   97 (103)
T d1iama1          80 ELDL-RPQ--GL-ELFENTSAP   97 (103)
T ss_dssp             EEEC-GGG--TS-CEEEEECCC
T ss_pred             EeCC-CCc--cC-eEeeeEcCC
Confidence            9998 441  22 334555544

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=5.3e-12  Score=81.21  Aligned_cols=78  Identities=18%  Similarity=0.331  Sum_probs=58.8

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEee
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      ..++|... .|.+|+++.|.|.+.+.+..  ....|.+|+..+.           ..++.|.|.+++.+|+| .|+|+|.
T Consensus         4 It~~P~~~-~v~~G~~v~L~C~~~~~~~~--~~~~~~~~~~~~~-----------~~~~~l~i~~v~~~d~G-~Y~C~a~   68 (82)
T d1f2qa1           4 VSLNPPWN-RIFKGENVTLTCNGNNFFEV--SSTKWFHNGSLSE-----------ETNSSLNIVNAKFEDSG-EYKCQHQ   68 (82)
T ss_dssp             CEEESSCS-EEETTCCEEEECCTTCC------CCEEEETTEECS-----------CCSSEEEECSCCGGGCE-EEEEECT
T ss_pred             EEEcCCCe-EEeCCCeEEEEEEEeeeeee--cceeeeeeeeeee-----------cccceeEECCCChhhCC-cEEEEec
Confidence            34567777 89999999999999988754  3467888886652           13567999999999997 9999998


Q ss_pred             cccCCeEEecccceEEEEe
Q psy5694         101 NKITGESQASVFQTRLSIT  119 (129)
Q Consensus       101 N~ltge~k~S~~~~~L~V~  119 (129)
                      |.-     .|+ +..|.|.
T Consensus        69 ~s~-----~S~-~v~l~V~   81 (82)
T d1f2qa1          69 QVN-----ESE-PVYLEVF   81 (82)
T ss_dssp             TSS-----CCC-CEEEEEE
T ss_pred             CCC-----Ccc-cEEEEEE
Confidence            852     355 7788885

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.23  E-value=1.6e-11  Score=79.24  Aligned_cols=76  Identities=22%  Similarity=0.350  Sum_probs=58.2

Q ss_pred             eEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeec
Q psy5694          22 EINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVN  101 (129)
Q Consensus        22 ~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N  101 (129)
                      ..+|... .|.+|++++|.|.+.+.+++  ..+.|.+|+..+..           .++.|.|.+++.+|+| .|+|+|.|
T Consensus         9 ~~~P~~~-~v~~G~~vtL~C~~~~~~~~--~~~~~~~~~~~~~~-----------~~~~l~i~~~~~~d~G-~Y~C~a~~   73 (84)
T d1fnla1           9 FLEPQWY-SVLEKDSVTLKCQGAYSPED--NSTQWFHNESLISS-----------QASSYFIDAATVNDSG-EYRCQTNL   73 (84)
T ss_dssp             EEESCCS-EEETTCCEEEEEECCCBTTB--CCCEEEETTEEEES-----------SCSEEEESSCCGGGCE-EEEEECSS
T ss_pred             EECCCCc-EEeCCCeEEEEEEeccCCCC--eEEEEeeeceeeee-----------cceeeEecCCcccCCE-EEEEEccC
Confidence            3456666 89999999999999888764  24567777755532           2467999999999997 99999987


Q ss_pred             ccCCeEEecccceEEEE
Q psy5694         102 KITGESQASVFQTRLSI  118 (129)
Q Consensus       102 ~ltge~k~S~~~~~L~V  118 (129)
                      ..     .|+ +++|.|
T Consensus        74 s~-----~S~-~v~L~V   84 (84)
T d1fnla1          74 ST-----LSD-PVQLEV   84 (84)
T ss_dssp             SC-----CCC-CEEEEE
T ss_pred             CC-----ccc-cEEEEC
Confidence            53     355 778876

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=8.8e-12  Score=82.54  Aligned_cols=73  Identities=19%  Similarity=0.198  Sum_probs=53.6

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCce---EEEc-c--------CccEEEeccCCCCCCcceEE
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGK---YVVL-S--------SGDLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~r---y~vl-p--------sG~L~I~nv~~~D~g~~Y~C   97 (129)
                      .|..|..+.|.|.+.+.|.   +.+.|.+|+..|.... ...+   .... .        ...|.|.+++.+|.|..|.|
T Consensus        13 ~v~~G~~v~l~C~v~g~P~---p~i~W~~~g~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C   88 (107)
T d1iray3          13 EVDLGSQIQLICNVTGQLS---DIAYWKWNGSVIDEDD-PVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTC   88 (107)
T ss_dssp             ECCTTCCEEEEEEEEECTT---CEEEEEETTEECCTTC-SSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEE
T ss_pred             EEeCCCEEEEEEEeccCCC---CeEEEEECCccccccc-ceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEE
Confidence            5678999999999988775   5689999987764321 1111   1111 1        24699999999999855999


Q ss_pred             EeecccCCeE
Q psy5694          98 RTVNKITGES  107 (129)
Q Consensus        98 ~a~N~ltge~  107 (129)
                      .|.|.+ |+.
T Consensus        89 ~A~N~~-G~~   97 (107)
T d1iray3          89 FAKNTH-GID   97 (107)
T ss_dssp             EEECSS-CEE
T ss_pred             EEEeCC-CeE
Confidence            999999 763

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.4e-11  Score=82.86  Aligned_cols=79  Identities=13%  Similarity=0.214  Sum_probs=49.3

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT  104 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~lt  104 (129)
                      .... .|..|..+.|.|.+.++-+...+.++|++|+..|...........-...-.+++.++..+|.|+.|+|+|.|.+.
T Consensus         9 ~~p~-~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~   87 (106)
T d1zxqa1           9 LQPT-LVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLM   87 (106)
T ss_dssp             EESS-EECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECG
T ss_pred             CCCC-EEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCC
Confidence            3444 778999999999998753333568999999988754211110000000112334445555665699999999873

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.8e-12  Score=83.68  Aligned_cols=73  Identities=14%  Similarity=0.103  Sum_probs=56.5

Q ss_pred             eeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCC
Q psy5694          26 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITG  105 (129)
Q Consensus        26 ~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltg  105 (129)
                      .+. .+.+|+.+.|.|.+.+.|+   +.++|++|+..+.            +.|.  |.+++.+|+| .|+|+|.|.. |
T Consensus        12 ~~~-~~~~G~~~~l~C~a~G~P~---P~v~W~k~g~~~~------------~~~~--~~~v~~~d~G-~Y~C~A~N~~-G   71 (84)
T d2oz4a3          12 GNW-TWPENSQQTPMCQAWGNPL---PELKCLKDGTFPL------------PIGE--SVTVTRDLEG-TYLCRARSTQ-G   71 (84)
T ss_dssp             SEE-EEETTCEECCCCCCEEESC---CEEEEEETTTEEC------------CTTS--CEECCGGGCE-EEEEEEEETT-E
T ss_pred             ccE-EEeCCCEEEEEEEEeEcCc---cEEEEEEeeccce------------eeee--eeccccCCCC-EEEEEEEcCC-C
Confidence            445 7889999999999988774   6799999985442            2233  5678999997 9999999998 7


Q ss_pred             eEEecccceEEEEecC
Q psy5694         106 ESQASVFQTRLSITGK  121 (129)
Q Consensus       106 e~k~S~~~~~L~V~ep  121 (129)
                      +.  +. .+.|.|..|
T Consensus        72 ~~--~~-~~~l~V~~P   84 (84)
T d2oz4a3          72 EV--TR-EVTVNVLSP   84 (84)
T ss_dssp             EE--EE-EEEEEEECC
T ss_pred             EE--EE-EEEEEEECC
Confidence            64  33 568888765

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=3.4e-11  Score=79.93  Aligned_cols=77  Identities=10%  Similarity=0.086  Sum_probs=55.8

Q ss_pred             CCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEE--cc-----CccEEEeccCCCCCCcceEEEeecccCCe
Q psy5694          34 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV--LS-----SGDLYVFNATPNDGYKSYRCRTVNKITGE  106 (129)
Q Consensus        34 GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~v--lp-----sG~L~I~nv~~~D~g~~Y~C~a~N~ltge  106 (129)
                      +..+.|.|.+.+.|+   +.++|++|+..|.+.    +++.+  ..     ++.|.|.+++.+|+| .|+|+|.|.+ |+
T Consensus        17 ~~~~~i~~~v~G~P~---P~v~W~~n~~~i~~~----~~~~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~C~a~N~~-G~   87 (105)
T d1wwca_          17 RLEHCIEFVVRGNPP---PTLHWLHNGQPLRES----KIIHVEYYQEGEISEGCLLFNKPTHYNNG-NYTLIAKNPL-GT   87 (105)
T ss_dssp             CCEEEEEEEEECSSC---CEEEEEETTEECCCS----SSEEEEEEECSSEEEEEEEEESCCGGGCE-EEEEEEEETT-EE
T ss_pred             EEEEEEEEEEEEeCC---CeEEEEeCccccCCC----cceeeeEEeecccceEEEEEeecccccce-EEEEEEEcCC-CE
Confidence            344557888888875   679999999888542    33322  21     345999999999997 9999999998 66


Q ss_pred             EEecccceEEEEecCC
Q psy5694         107 SQASVFQTRLSITGKL  122 (129)
Q Consensus       107 ~k~S~~~~~L~V~ep~  122 (129)
                      .  +. ..+|.|.+++
T Consensus        88 ~--~~-~~~v~V~~~P  100 (105)
T d1wwca_          88 A--NQ-TINGHFLKEP  100 (105)
T ss_dssp             E--EE-EEEECCSCCC
T ss_pred             E--EE-EEEEEEEeCC
Confidence            3  33 4577777655

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=5e-11  Score=79.40  Aligned_cols=80  Identities=13%  Similarity=0.069  Sum_probs=59.0

Q ss_pred             EeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEE----c----cCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVV----L----SSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~v----l----psG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      ..+....|.|.+.+.|+   +.+.|++|+..|..    ++++.+    .    ..+.|.|.+++.+|.| .|+|.|.|.+
T Consensus        14 ~~~~~~~i~~~v~G~P~---P~i~W~~~g~~l~~----~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~C~a~N~~   85 (103)
T d1wwbx_          14 TSDHHWCIPFTVKGNPK---PALQWFYNGAILNE----SKYICTKIHVTNHTEYHGCLQLDNPTHMNNG-DYTLIAKNEY   85 (103)
T ss_dssp             CCCCEEEEEEEEECSSC---CEEEEEETTEEECC----CSSEEEEEEEECSSEEEEEEEEESCCGGGCE-EEEEEEECSS
T ss_pred             ccceeEEEEEEEEEeCC---CEEEEEECCEEeee----eeeeeeeecccccccceEEEEECCCCHHhCc-eEEEEEeccC
Confidence            35677789999988874   67899999988853    233322    1    1245999999999997 9999999998


Q ss_pred             CCeEEecccceEEEEecCCC
Q psy5694         104 TGESQASVFQTRLSITGKLK  123 (129)
Q Consensus       104 tge~k~S~~~~~L~V~ep~~  123 (129)
                       |+.  +. ..+|.|.++++
T Consensus        86 -G~~--~~-~~~v~V~~~P~  101 (103)
T d1wwbx_          86 -GKD--EK-QISAHFMGWPG  101 (103)
T ss_dssp             -CEE--EE-EEEECCSCCCC
T ss_pred             -CEE--EE-EEEEEEEeCCC
Confidence             774  33 45777766554

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=4.7e-11  Score=80.03  Aligned_cols=84  Identities=11%  Similarity=0.031  Sum_probs=57.5

Q ss_pred             eCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc--------CccEEEeccCCCCCCcceEEEeecccC
Q psy5694          33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS--------SGDLYVFNATPNDGYKSYRCRTVNKIT  104 (129)
Q Consensus        33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp--------sG~L~I~nv~~~D~g~~Y~C~a~N~lt  104 (129)
                      .+....|.|.+.+.|+   +.++|++|+..|...  ...+..+..        .+.|.|.+++.+|.| .|+|+|.|.+ 
T Consensus        14 ~~~~~ci~~~v~G~P~---P~v~W~~ng~~l~~~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~C~A~N~~-   86 (107)
T d1he7a_          14 EMHHWCIPFSVDGQPA---PSLRWLFNGSVLNET--SFIFTEFLEPAANETVRHGCLRLNQPTHVNNG-NYTLLAANPF-   86 (107)
T ss_dssp             CCCEEEEEEEECCSSC---CEEEEEETTEECCCC--SSEEEEEECCCSSCCCEEEEEEEESCCGGGCE-EEEEEEEETT-
T ss_pred             EEEEEEEEEEEEEecC---CeEEEEEeeeEccCc--cceeeeeeeeeeeeeccceEEEECcccHHHCc-EEEEEEEeCC-
Confidence            3444446668888884   679999999888542  111222221        245999999999997 9999999999 


Q ss_pred             CeEEecccceEEEEecCCCCCC
Q psy5694         105 GESQASVFQTRLSITGKLKSLC  126 (129)
Q Consensus       105 ge~k~S~~~~~L~V~ep~~~~~  126 (129)
                      |+...   ...|.|.+++-...
T Consensus        87 G~~~~---~i~v~v~~~P~~~~  105 (107)
T d1he7a_          87 GQASA---SIMAAFMDNPFEFN  105 (107)
T ss_dssp             EEEEE---EEEECCCSCTTSCC
T ss_pred             CEEEE---EEEEEEEcCCCCcC
Confidence            77433   44777777665443

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.13  E-value=7.4e-11  Score=79.70  Aligned_cols=70  Identities=19%  Similarity=0.199  Sum_probs=52.4

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecce-----eee---cc-------cCCCceEEEccCccEEEeccCCCCCCcc
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDV-----NIY---LN-------TDTGGKYVVLSSGDLYVFNATPNDGYKS   94 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~-----~i~---~~-------~~~~~ry~vlpsG~L~I~nv~~~D~g~~   94 (129)
                      .|.+|++++|.|+..+   +....+.|.|+..     .|.   +.       ..-.+|..+.++|.|.|+||+.+|+| .
T Consensus        10 ~v~~G~~V~L~c~~~p---~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G-~   85 (107)
T d1l6za1          10 QVAEDNNVLLLVHNLP---LALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMG-V   85 (107)
T ss_dssp             SCCTTCCEEEEEESCC---TTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCE-E
T ss_pred             cccCCCCEEEEecCCC---CCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCE-E
Confidence            5789999999998432   2245689988541     121   11       11247999999999999999999998 9


Q ss_pred             eEEEeeccc
Q psy5694          95 YRCRTVNKI  103 (129)
Q Consensus        95 Y~C~a~N~l  103 (129)
                      |.|.+.+.-
T Consensus        86 Y~c~v~~~~   94 (107)
T d1l6za1          86 YTLDMTDEN   94 (107)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEEEECC
Confidence            999998763

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.2e-10  Score=75.24  Aligned_cols=70  Identities=13%  Similarity=0.136  Sum_probs=51.2

Q ss_pred             eEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc--------cCCCceEEEc-cCccEEEeccCCCCCCcceEEEe
Q psy5694          29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN--------TDTGGKYVVL-SSGDLYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        29 ~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~--------~~~~~ry~vl-psG~L~I~nv~~~D~g~~Y~C~a   99 (129)
                      +++..|.+++|.|.+. .|   .+.+.|.+++..|...        ..-..|..+. .+|.|.|+|++.+|+| .|+|.+
T Consensus         5 v~~~~G~sVtl~c~~~-~p---~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG-~Y~c~~   79 (93)
T d1ccza1           5 IYGVVYGNVTFHVPSN-VP---LKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDED-EYEMES   79 (93)
T ss_dssp             EEEETTCCEEECCCCS-SC---CSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCE-EEEEEC
T ss_pred             EEEEECCCEEEEecCC-CC---CcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCE-EEEEEE
Confidence            4899999999999763 23   3568999988544211        0112344443 4789999999999997 999999


Q ss_pred             eccc
Q psy5694         100 VNKI  103 (129)
Q Consensus       100 ~N~l  103 (129)
                      .|..
T Consensus        80 ~n~~   83 (93)
T d1ccza1          80 PNIT   83 (93)
T ss_dssp             TTCC
T ss_pred             ECCC
Confidence            8864

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.08  E-value=3.6e-10  Score=75.91  Aligned_cols=98  Identities=15%  Similarity=0.242  Sum_probs=62.1

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecce----eee-cc----c----CCCceEEEc----c--CccEEEec
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDV----NIY-LN----T----DTGGKYVVL----S--SGDLYVFN   85 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~----~i~-~~----~----~~~~ry~vl----p--sG~L~I~n   85 (129)
                      +++.|.|..|++|+|.|.+..........+.|.+++.    .+. ..    .    .-..|....    .  +..|.|+|
T Consensus         8 p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~   87 (126)
T d1pkoa_           8 PGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQN   87 (126)
T ss_dssp             CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESS
T ss_pred             CCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEE
Confidence            3333589999999999997432222234579988651    111 10    0    112343332    1  45799999


Q ss_pred             cCCCCCCcceEEEeecccCCeEEecccceEEEEecCCCCCCC
Q psy5694          86 ATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGKLKSLCT  127 (129)
Q Consensus        86 v~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~~~~~~  127 (129)
                      |+.+|+| .|.|.+.|.. |.  .+. ...|.|.+|.-.+.+
T Consensus        88 v~~~D~G-~Y~C~v~~~~-~~--~~~-~v~L~V~~P~~~~~p  124 (126)
T d1pkoa_          88 VRFSDEG-GYTCFFRDHS-YQ--EEA-AVELKVEDPFYWINP  124 (126)
T ss_dssp             CCGGGCE-EEEEEEEETT-EE--EEE-EEEEEEECTTTTSST
T ss_pred             EchhHCe-EEEEEEEECC-CE--EEE-EEEEEEeCCCEEeCC
Confidence            9999997 9999999864 33  243 568999998766543

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=1.2e-09  Score=72.19  Aligned_cols=78  Identities=12%  Similarity=0.187  Sum_probs=53.9

Q ss_pred             eEEEeCCeEEEEeeCCCCCCC-ceeEeEEeecceeeeccc--------CCCceEEEccCc--cEEEeccCCCCCCcceEE
Q psy5694          29 HNVILGNTAVLRCQIPSYMSE-YIIVTSWIQDDVNIYLNT--------DTGGKYVVLSSG--DLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        29 ~~V~~GntAvL~C~vp~~~~~-~v~v~sW~~d~~~i~~~~--------~~~~ry~vlpsG--~L~I~nv~~~D~g~~Y~C   97 (129)
                      |.+..|++|+|+|.+.....+ ..-.+.|.+++..+....        .-.+|.....+|  .|.|+|++.+|+| .|.|
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G-~Y~C   82 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEG-TYEC   82 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCE-EEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCe-EEEE
Confidence            378899999999998654333 234578988874431110        113465555555  5999999999997 9999


Q ss_pred             EeecccCCeE
Q psy5694          98 RTVNKITGES  107 (129)
Q Consensus        98 ~a~N~ltge~  107 (129)
                      .+.+...|..
T Consensus        83 ~V~~~~~~~~   92 (105)
T d1dr9a1          83 VVLKYEKDAF   92 (105)
T ss_dssp             EEEECCTTSC
T ss_pred             EEEeCCCCCe
Confidence            9987655553

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.90  E-value=3.8e-09  Score=70.18  Aligned_cols=89  Identities=16%  Similarity=0.193  Sum_probs=54.0

Q ss_pred             eEEEeCCeEEEEeeCCCCCC-CceeEeEEeecc------eeeecc----------cCCCceEEEcc-----CccEEEecc
Q psy5694          29 HNVILGNTAVLRCQIPSYMS-EYIIVTSWIQDD------VNIYLN----------TDTGGKYVVLS-----SGDLYVFNA   86 (129)
Q Consensus        29 ~~V~~GntAvL~C~vp~~~~-~~v~v~sW~~d~------~~i~~~----------~~~~~ry~vlp-----sG~L~I~nv   86 (129)
                      +.+..|.+|+|.|.+....+ .....+.|.+..      ..+...          ..-.+|+....     +..|.|+|+
T Consensus         9 v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   88 (119)
T d1neua_           9 VYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNL   88 (119)
T ss_dssp             EEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEECSC
T ss_pred             EEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEEECCC
Confidence            48999999999998643211 223468897632      112100          01135666531     346999999


Q ss_pred             CCCCCCcceEEEeecccCCeEEecccceEEEEec
Q psy5694          87 TPNDGYKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        87 ~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      +.+|+| .|.|.+.+.-....+ +. ..+|.|.|
T Consensus        89 ~~~DsG-~Y~C~v~~~~~~~~~-~~-~v~L~V~e  119 (119)
T d1neua_          89 DYSDNG-TFTCDVKNPPDIVGK-TS-QVTLYVFE  119 (119)
T ss_dssp             CGGGCE-EEEEEEEC----CCE-EE-EEEEEEEC
T ss_pred             ChHHCE-EEEEEEEECCCcCce-EE-EEEEEEEC
Confidence            999997 999999885422222 22 45787765

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.1e-08  Score=67.61  Aligned_cols=90  Identities=23%  Similarity=0.285  Sum_probs=54.3

Q ss_pred             eEEEeCCeEEEEeeCCCCC--CCceeEeEEeecc-eeeec---c----cCCCceE----EE-ccCccEEEeccCCCCCCc
Q psy5694          29 HNVILGNTAVLRCQIPSYM--SEYIIVTSWIQDD-VNIYL---N----TDTGGKY----VV-LSSGDLYVFNATPNDGYK   93 (129)
Q Consensus        29 ~~V~~GntAvL~C~vp~~~--~~~v~v~sW~~d~-~~i~~---~----~~~~~ry----~v-lpsG~L~I~nv~~~D~g~   93 (129)
                      |.++.|++|.|+|.+....  ......+.|.+++ ..+..   .    ...++||    .. ..+..|.|+||+.+|+| 
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G-   82 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKG-   82 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCE-
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCE-
Confidence            4788999999999985332  2222345666655 33211   1    0112222    22 24567999999999997 


Q ss_pred             ceEEEeeccc-CCeEEecccceEEEEe
Q psy5694          94 SYRCRTVNKI-TGESQASVFQTRLSIT  119 (129)
Q Consensus        94 ~Y~C~a~N~l-tge~k~S~~~~~L~V~  119 (129)
                      .|.|...+.- .|+.+.......|.|.
T Consensus        83 ~Y~C~V~~~~~~~~~~~~~~~~~L~V~  109 (110)
T d1ncna_          83 LYQCIIHHKKPTGMIRIHQMNSELSVL  109 (110)
T ss_dssp             EEEEEEEEECSSSEEEEEEEEEEEEEE
T ss_pred             EEEEEEEecCCCceEEEEcceEEEEEE
Confidence            9999986443 3544443335566663

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=1.3e-08  Score=66.30  Aligned_cols=97  Identities=14%  Similarity=0.192  Sum_probs=60.0

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCC--CCCCC-ceeEeEEeecc----eee-ecc------cCCCceEEEcc-----CccE
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIP--SYMSE-YIIVTSWIQDD----VNI-YLN------TDTGGKYVVLS-----SGDL   81 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp--~~~~~-~v~v~sW~~d~----~~i-~~~------~~~~~ry~vlp-----sG~L   81 (129)
                      |+++....|.+.+|.++.|+|.+.  ..... ....+.|.+..    ..+ ...      ....+|+.+..     +..|
T Consensus         2 w~V~~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL   81 (118)
T d1qfoa_           2 WGVSSPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNL   81 (118)
T ss_dssp             CEEECCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCE
T ss_pred             cEEECCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEE
Confidence            456644555999999999999963  22111 12335677643    122 111      12356887752     3349


Q ss_pred             EEeccCCCCCCcceEEEeecccCCeEEecccceEEEEe
Q psy5694          82 YVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        82 ~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      .|.||+.+|+| .|.|++...- +....+....+|+|+
T Consensus        82 ~I~~v~~~DsG-~Y~C~v~~~~-~~~~~~~~~~~ltVt  117 (118)
T d1qfoa_          82 LLKDLKPEDSG-TYNFRFEISD-SNRWLDVKGTTVTVT  117 (118)
T ss_dssp             EECSCCGGGCE-EEEEEEECC--CCEEECSSCEEEEEE
T ss_pred             EECCCChhHCE-EEEEEEEeCC-CCeEEcCCCEEEEEe
Confidence            99999999997 9999997653 332333345578776

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=5.7e-09  Score=70.16  Aligned_cols=82  Identities=18%  Similarity=0.329  Sum_probs=56.4

Q ss_pred             eeeeEeeeeeeEEEeCCeEEEEeeC--CCC--CCCceeEeEEeecc--ee----eecc-------cCCCceEEEcc----
Q psy5694          19 QKYEINVNYEHNVILGNTAVLRCQI--PSY--MSEYIIVTSWIQDD--VN----IYLN-------TDTGGKYVVLS----   77 (129)
Q Consensus        19 q~y~~~v~~~~~V~~GntAvL~C~v--p~~--~~~~v~v~sW~~d~--~~----i~~~-------~~~~~ry~vlp----   77 (129)
                      |+|+++++..|.|.+|.++.|+|.+  |..  .......+.|.+..  ..    +...       ....+|+.++.    
T Consensus         1 ~~~~~~~~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~   80 (121)
T d2g5ra1           1 KDYSLTMQSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQT   80 (121)
T ss_dssp             -CCEEECCSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGG
T ss_pred             CceEEEeCCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcC
Confidence            6789999988899999999999987  322  12233567898864  11    1110       11245777752    


Q ss_pred             -CccEEEeccCCCCCCcceEEEeec
Q psy5694          78 -SGDLYVFNATPNDGYKSYRCRTVN  101 (129)
Q Consensus        78 -sG~L~I~nv~~~D~g~~Y~C~a~N  101 (129)
                       +..|.|+||+.+|+| .|.|+...
T Consensus        81 ~~~sL~I~~v~~~DsG-~Y~C~v~~  104 (121)
T d2g5ra1          81 KNCTLSIRDARMSDAG-RYFFRMEK  104 (121)
T ss_dssp             TBCCEEECSCCGGGCE-EEEEEEEE
T ss_pred             CEEEEEECCCChHHCE-EEEEEEEe
Confidence             345999999999997 99999974

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1e-08  Score=67.72  Aligned_cols=88  Identities=20%  Similarity=0.255  Sum_probs=55.6

Q ss_pred             eeeeEEEeCCeEEEEeeCCCCCCC-ceeEeEEeecc--e-----e-ee-------cc--cCCCceEEEcc------CccE
Q psy5694          26 NYEHNVILGNTAVLRCQIPSYMSE-YIIVTSWIQDD--V-----N-IY-------LN--TDTGGKYVVLS------SGDL   81 (129)
Q Consensus        26 ~~~~~V~~GntAvL~C~vp~~~~~-~v~v~sW~~d~--~-----~-i~-------~~--~~~~~ry~vlp------sG~L   81 (129)
                      ++.+.+.+|++|.|.|.+...+.+ ....+.|.+..  .     . +.       +.  ..-.+|..+..      +..|
T Consensus        11 ~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL   90 (124)
T d1eaja_          11 EEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASI   90 (124)
T ss_dssp             EEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCE
T ss_pred             CceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEE
Confidence            344588999999999997543222 23458898642  1     0 10       00  11135666542      2469


Q ss_pred             EEeccCCCCCCcceEEEeecccCCeEEecccceEEEE
Q psy5694          82 YVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI  118 (129)
Q Consensus        82 ~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V  118 (129)
                      .|.|++.+|+| .|.|.+.|.. |.  .+. ...|+|
T Consensus        91 ~I~~v~~~D~G-~Y~C~v~~~~-~~--~~~-~~~L~V  122 (124)
T d1eaja_          91 NVTNLQLSDIG-TYQCKVKKAP-GV--ANK-KIHLVV  122 (124)
T ss_dssp             EECSCCGGGCE-EEEEEEEETT-EE--EEE-EEEEEE
T ss_pred             EEcccEEccCE-EEEEEEEECC-Ce--EEe-EEEEEE
Confidence            99999999997 9999999864 32  233 446665

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=2.1e-08  Score=66.03  Aligned_cols=82  Identities=13%  Similarity=0.081  Sum_probs=54.3

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEE-EccCccEEEeccCCCCCCcceEEEeecccCCeEE
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYV-VLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQ  108 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~-vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k  108 (129)
                      .|..|.+++|.|+.+...    ....|.+++...... ....... -....++.|.+|+.+|+| .|+|...|.. +-..
T Consensus        17 ~V~~G~~VTL~C~~~~~~----~~f~l~k~g~~~~~~-~~~~~~~~~~~~a~F~l~~vt~~~~G-~Y~C~y~~~~-~~S~   89 (99)
T d1ucta1          17 VIPLDGSVKIQCQAIREA----YLTQLMIIKNSTYRE-IGRRLKFWNETDPEFVIDHMDANKAG-RYQCQYRIGH-YRFR   89 (99)
T ss_dssp             EEETTCCEEEEECCCTTC----SEEEEEEEETTEEEE-CSEECC----CCCEEEECSCCGGGCE-EEEEEEEETT-TEEE
T ss_pred             ceeCCCeEEEEEcCCCCC----cEEEEEECCCcCcee-ccccccCCCCceEEEEecCCCHHHCc-eEEEEEECCC-cccC
Confidence            578899999999987433    346888876211100 0000000 011245899999999997 9999999876 4456


Q ss_pred             ecccceEEEEe
Q psy5694         109 ASVFQTRLSIT  119 (129)
Q Consensus       109 ~S~~~~~L~V~  119 (129)
                      .|+ +..|+|+
T Consensus        90 ~Sd-pl~L~VT   99 (99)
T d1ucta1          90 YSD-TLELVVT   99 (99)
T ss_dssp             ECC-CEEEEEE
T ss_pred             CCC-CEEEEeC
Confidence            677 8899886

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=2e-08  Score=65.39  Aligned_cols=70  Identities=16%  Similarity=0.157  Sum_probs=47.5

Q ss_pred             eEEEeCCeEEEEeeCCCCCCCceeEeEEeecce--eee-c-------ccCCCceEEEc----c--CccEEEeccCCCCCC
Q psy5694          29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDV--NIY-L-------NTDTGGKYVVL----S--SGDLYVFNATPNDGY   92 (129)
Q Consensus        29 ~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~--~i~-~-------~~~~~~ry~vl----p--sG~L~I~nv~~~D~g   92 (129)
                      |.+.+|.+|.|.|......   ...+.|.+...  .+. .       ...-.+|+...    .  +..|.|+|++.+|+|
T Consensus         4 V~~~~G~svtL~C~~s~~~---~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG   80 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKK---SIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSD   80 (97)
T ss_dssp             EEEETTSCEEECCBCSSSS---CCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCE
T ss_pred             EEEEcCCcEEEEEEEecCC---CceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCE
Confidence            3678999999999986543   24579988652  111 0       01123455442    2  235999999999997


Q ss_pred             cceEEEeecc
Q psy5694          93 KSYRCRTVNK  102 (129)
Q Consensus        93 ~~Y~C~a~N~  102 (129)
                       .|.|.+.|.
T Consensus        81 -~Y~C~v~~~   89 (97)
T d2nxyb1          81 -TYICEVEDQ   89 (97)
T ss_dssp             -EEEEEETTE
T ss_pred             -EEEEEEecC
Confidence             999999774

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1e-07  Score=62.63  Aligned_cols=82  Identities=12%  Similarity=0.018  Sum_probs=54.2

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEe
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQA  109 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~  109 (129)
                      .|..|.++.|+|+.+...    ....|.+++...........+.  ....++.|.+|+.+|+| .|+|...+.. +-+..
T Consensus        14 ~V~~G~~VTL~C~~~~~~----~~f~L~k~g~~~~~~~~~~~~~--~~~a~F~i~~v~~~~~G-~Y~C~y~~~~-~~S~~   85 (95)
T d1olla1          14 MVPKEKQVTICCQGNYGA----VEYQLHFEGSLFAVDRPKPPER--INKVKFYIPDMNSRMAG-QYSCIYRVGE-LWSEP   85 (95)
T ss_dssp             EEETTCCEEEEEECCTTC----CEEEEEETTEEEEEECCSSCTT--CCEEEEEESSCCGGGCE-EEEEEEEETT-EECCC
T ss_pred             cccCCCcEEEEEecCCCc----cEEEEEECCCCcceeEEccCCC--ccEEEEEEeeeecCCCc-eEEEEeCCCC-CccCC
Confidence            578999999999986443    3357788763221100000000  00136999999999997 9999998864 33345


Q ss_pred             cccceEEEEec
Q psy5694         110 SVFQTRLSITG  120 (129)
Q Consensus       110 S~~~~~L~V~e  120 (129)
                      |+ +..|.|+|
T Consensus        86 Sd-~leL~VTd   95 (95)
T d1olla1          86 SN-LLDLVVTE   95 (95)
T ss_dssp             CC-CEEEEEES
T ss_pred             CC-CEEEEEeC
Confidence            66 88999986

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=5.3e-08  Score=64.78  Aligned_cols=94  Identities=14%  Similarity=0.209  Sum_probs=58.9

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e---ee-ecc----cCCCceEEEcc-----CccEEEeccCC
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NI-YLN----TDTGGKYVVLS-----SGDLYVFNATP   88 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~---~i-~~~----~~~~~ry~vlp-----sG~L~I~nv~~   88 (129)
                      .|+.. .+.+|.+|.|.|..+.........+.|.+..  .   .+ ...    ....+|+.+..     +..|.|+|++.
T Consensus         5 ~P~~V-~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~   83 (116)
T d1xeda_           5 GPEEV-NSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQ   83 (116)
T ss_dssp             CCSEE-EEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CCCEE-EEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCc
Confidence            45655 8999999999999864422112346787633  1   22 111    12245665532     23699999999


Q ss_pred             CCCCcceEEEeecccCCeEEecccceEEEEecCCC
Q psy5694          89 NDGYKSYRCRTVNKITGESQASVFQTRLSITGKLK  123 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~~  123 (129)
                      +|+| .|.|.+...-.+.   .. ...|.|-|+..
T Consensus        84 ~DsG-~Y~C~v~~~~~~~---~~-~v~L~V~~~~~  113 (116)
T d1xeda_          84 DDSG-RYKCGLGINSRGL---SF-DVSLEVLEHHH  113 (116)
T ss_dssp             GGCE-EEEEEESCGGGCC---EE-EEEEEEECCCC
T ss_pred             CCCE-EEEEEEEcCCCCc---eE-eEEEEEECCCc
Confidence            9997 9999987553333   21 45788887653

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1e-07  Score=63.42  Aligned_cols=74  Identities=12%  Similarity=0.095  Sum_probs=52.4

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc-----cCCCceEEEccCccEEEeccCCCCCCcceEEEeecccC
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-----TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT  104 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~-----~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~lt  104 (129)
                      .+..|..+.|.|.++++-+.....++|++++..+...     ....+.+.+.  ..|.+ .++++|.|+.|+|+|.|.+.
T Consensus        12 ~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~--s~l~~-~~~~~D~g~~ltC~a~~~~~   88 (109)
T d1vcaa1          12 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKS--LEVTF-TPVIEDIGKVLVCRAKLHID   88 (109)
T ss_dssp             CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEE--EEEEE-CCCGGGTTCEEEEEEEECSC
T ss_pred             CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceee--EEEEc-cCChHHCCcEEEEEEEcCcC
Confidence            4578999999999987654444679999998776432     1123344332  23444 58888999999999999986


Q ss_pred             Ce
Q psy5694         105 GE  106 (129)
Q Consensus       105 ge  106 (129)
                      +.
T Consensus        89 ~~   90 (109)
T d1vcaa1          89 EM   90 (109)
T ss_dssp             CC
T ss_pred             Cc
Confidence            54

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=4.1e-07  Score=60.01  Aligned_cols=72  Identities=19%  Similarity=0.409  Sum_probs=48.9

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e---ee-ecc----cCCCceEEEc--c-Cc--cEEEeccCCCCCCcc
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NI-YLN----TDTGGKYVVL--S-SG--DLYVFNATPNDGYKS   94 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~---~i-~~~----~~~~~ry~vl--p-sG--~L~I~nv~~~D~g~~   94 (129)
                      .+.+|.+|.|+|..+....++ ..+.|.+..  .   .| ...    ....+|+.+.  + +|  .|.|.|++.+|+| .
T Consensus         7 ~~~~G~svtl~C~~~~~~~~~-~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG-~   84 (108)
T d1hkfa_           7 QSVAGQTLTVRCQYPPTGSLY-EKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSG-H   84 (108)
T ss_dssp             EECTTCCEEEEEECCCCTTCC-CEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCE-E
T ss_pred             EEcCCCCEEEEEEECCCCCCC-CEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCE-E
Confidence            889999999999987654442 346797732  1   22 111    1224666653  2 23  4999999999997 9


Q ss_pred             eEEEeeccc
Q psy5694          95 YRCRTVNKI  103 (129)
Q Consensus        95 Y~C~a~N~l  103 (129)
                      |.|.....-
T Consensus        85 Y~C~v~~~~   93 (108)
T d1hkfa_          85 YWCRIYRPS   93 (108)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEecCC
Confidence            999987553

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.49  E-value=5.2e-07  Score=60.71  Aligned_cols=92  Identities=13%  Similarity=0.314  Sum_probs=61.0

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeec--c---eee-e--c---ccCCCceEEEc--cCc---cEEEeccCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD--D---VNI-Y--L---NTDTGGKYVVL--SSG---DLYVFNATP   88 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d--~---~~i-~--~---~~~~~~ry~vl--psG---~L~I~nv~~   88 (129)
                      |... .|.+|++|.|.|........  ..+.|++-  +   ..| .  .   ....++||.+.  +++   .|.|.|++.
T Consensus         6 P~~l-~v~~G~~vtl~C~~~~~~~~--~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   82 (114)
T d3bp5a1           6 PAWL-TVSEGANATFTCSLSNWSED--LMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRR   82 (114)
T ss_dssp             SSEE-EEETTCCEEEEEEESCCCTT--CEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCG
T ss_pred             CCeE-EECCCCCEEEEEEECCCCCc--ceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCc
Confidence            4444 88999999999998655443  24789872  2   122 1  1   11345788774  333   299999999


Q ss_pred             CCCCcceEEEeecccCC-eEEecccceEEEEecC
Q psy5694          89 NDGYKSYRCRTVNKITG-ESQASVFQTRLSITGK  121 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~ltg-e~k~S~~~~~L~V~ep  121 (129)
                      +|+| .|.|.+...-.+ +..-.+ ..+|+|+|.
T Consensus        83 ~Dsg-~YyCa~~~~~~~~~~~FG~-GT~L~V~~k  114 (114)
T d3bp5a1          83 NDSG-IYLCGAISLHPKAKIEESP-GAELVVTER  114 (114)
T ss_dssp             GGCE-EEEEEEECSSSSCCCEECC-CEEEEEECC
T ss_pred             CCCe-EEEEEEEeCCCCcceEECc-CeEEEEEEC
Confidence            9997 999998754322 323343 669999874

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.41  E-value=1.2e-06  Score=58.53  Aligned_cols=93  Identities=15%  Similarity=0.211  Sum_probs=59.2

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eeeecc-----cCCCceEEEccCcc---EEEeccCCCC
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYLN-----TDTGGKYVVLSSGD---LYVFNATPND   90 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i~~~-----~~~~~ry~vlpsG~---L~I~nv~~~D   90 (129)
                      +|... .+..|.+|.|.|...++...--..+.|.+-.     ..|...     ....+++....+++   |.|++++.+|
T Consensus         6 QP~s~-~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   84 (112)
T d1lgva1           6 QPASV-SGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAED   84 (112)
T ss_dssp             CCSEE-EECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGG
T ss_pred             CCCcE-EECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCcccc
Confidence            35445 8889999999999876542212347898732     122111     12245666654444   9999999999


Q ss_pred             CCcceEEEeecccCCeEEecccceEEEEe
Q psy5694          91 GYKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        91 ~g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      ++ .|.|.+.+..+++..--. -.+|+|-
T Consensus        85 sa-~YyCa~~~~~~~~~~FG~-GTkLtVl  111 (112)
T d1lgva1          85 EA-DYYCSSYDGSSTSVVFGG-GTKLTVL  111 (112)
T ss_dssp             CE-EEEEEEECSSSSSEEEBC-CEEEEEC
T ss_pred             CE-EEEEeeecCCCCCCEeCc-CEEEEEC
Confidence            96 999998876544432222 4477763

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.33  E-value=2.7e-06  Score=56.68  Aligned_cols=92  Identities=21%  Similarity=0.216  Sum_probs=56.8

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeec--c---eee-ecc----cCCCceEEEcc---CccEEEeccCCCC
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD--D---VNI-YLN----TDTGGKYVVLS---SGDLYVFNATPND   90 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d--~---~~i-~~~----~~~~~ry~vlp---sG~L~I~nv~~~D   90 (129)
                      +|.+. .|.+|++|.|.|........  ..+.|++-  +   +.| ...    .....++.+..   +..|.|.+++.+|
T Consensus         4 QP~sv-sv~~G~~vtl~C~~s~~~~~--~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   80 (110)
T d2esvd1           4 QPPSM-DCAEGRAANLPCNHSTISGN--EYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRD   80 (110)
T ss_dssp             CCSEE-EEETTSCEEEEEECTTCCTT--EEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGG
T ss_pred             cCCEE-EECCCCCEEEEEEEcCCCCC--CeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCC
Confidence            34555 89999999999997543221  34789873  2   222 211    11234555443   3449999999999


Q ss_pred             CCcceEEEeeccc-CCeEEecccceEEEEec
Q psy5694          91 GYKSYRCRTVNKI-TGESQASVFQTRLSITG  120 (129)
Q Consensus        91 ~g~~Y~C~a~N~l-tge~k~S~~~~~L~V~e  120 (129)
                      ++ .|.|.+...- +++..--. ..+|+|++
T Consensus        81 sa-~YyCa~~~~~~~~~~~FG~-GT~L~V~p  109 (110)
T d2esvd1          81 TA-VYYCIVVRSSNTGKLIFGQ-GTTLQVKP  109 (110)
T ss_dssp             CE-EEEEEEEESCSSCCCCCCC-CEEEEEEC
T ss_pred             ce-EEEEEEeCCCCCCccEECC-CEEEEEEe
Confidence            97 9999986432 22322222 55888874

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.30  E-value=2.5e-06  Score=56.99  Aligned_cols=87  Identities=17%  Similarity=0.202  Sum_probs=58.0

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eeeec-----ccCCCceEEEccC---ccEEEeccCCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYL-----NTDTGGKYVVLSS---GDLYVFNATPNDG   91 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i~~-----~~~~~~ry~vlps---G~L~I~nv~~~D~   91 (129)
                      |... .|.+|++|.|.|........   .+.|++-.     ..|.-     .....+||.+..+   -.|.|.|++.+|.
T Consensus         8 P~~l-tv~~G~svtl~C~~s~~~~~---~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d1ospl1           8 SSSF-SVSLGDRVTITCKASEDIYS---RLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDV   83 (107)
T ss_dssp             CSEE-EECTTCCEEEEEEESSCCTT---CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGC
T ss_pred             CCEE-EECCCCCEEEEEecCCCccc---ccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccC
Confidence            3444 78899999999998765533   37898732     22211     0123568887644   4599999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEe
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      + .|.|.+.+..  ...--+ ..+|+|+
T Consensus        84 a-~YyCa~~~~~--~~~FG~-GT~LtVk  107 (107)
T d1ospl1          84 A-TYFCQQYWSP--PPTFGG-GTKLEIK  107 (107)
T ss_dssp             S-EEEEEECSSS--SCEECC-CEEEEEC
T ss_pred             C-cEEEeeccCC--CCeECC-CEEEEEC
Confidence            7 9999887543  322332 5577774

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.28  E-value=3.3e-06  Score=56.91  Aligned_cols=86  Identities=17%  Similarity=0.205  Sum_probs=55.2

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEee---cc--ee-eecc----cCCCceEEEcc---CccEEEeccCCCCCCcceE
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQ---DD--VN-IYLN----TDTGGKYVVLS---SGDLYVFNATPNDGYKSYR   96 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~---d~--~~-i~~~----~~~~~ry~vlp---sG~L~I~nv~~~D~g~~Y~   96 (129)
                      .|-.|++|.|.|.+.......-..+.|.+   +.  +. |+..    ....+||.+..   +..|.|++++.+|++ .|.
T Consensus        11 svs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa-~Yy   89 (110)
T d1oaql_          11 TTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEA-IYF   89 (110)
T ss_dssp             EECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCE-EEE
T ss_pred             EeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccE-eEE
Confidence            78899999999998654321112378987   22  12 2211    12346777643   344999999999996 999


Q ss_pred             EEeecccCCeEEecccceEEEEe
Q psy5694          97 CRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        97 C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      |.+.+.  +...--. ..+|+|.
T Consensus        90 Ca~~~~--~~~~FG~-GT~LtVl  109 (110)
T d1oaql_          90 CALWYS--NHLVFGG-GTKLTVL  109 (110)
T ss_dssp             EEEEET--TEEEECC-CEEEEEC
T ss_pred             EEcccC--CCCEECC-CeEEEEC
Confidence            998753  4433333 5577764

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.28  E-value=2.4e-06  Score=56.76  Aligned_cols=87  Identities=16%  Similarity=0.252  Sum_probs=57.1

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eeee-cc----cCCCceEEEccCc---cEEEeccCCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIY-LN----TDTGGKYVVLSSG---DLYVFNATPNDG   91 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i~-~~----~~~~~ry~vlpsG---~L~I~nv~~~D~   91 (129)
                      +... .|..|++|.|.|....+...   .+.|.+-.     +.|. ..    .....||.+..++   .|.|.+++.+|+
T Consensus         7 p~s~-~~~~G~svtL~C~~s~~~~~---~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   82 (106)
T d1lk3l1           7 PPAL-TVSPGEKLTISCKASESVTS---RMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDT   82 (106)
T ss_dssp             CSEE-EECTTSCEEEEEEESSCCTT---CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCeE-EECCCCCEEEEEEeCCCCCc---cEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhC
Confidence            4444 88899999999998765543   47897632     2221 11    1234678776554   599999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEe
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      + .|.|.+...  +...--. ..+|+|+
T Consensus        83 a-~YyCa~~~~--~~~~FG~-GT~LtVk  106 (106)
T d1lk3l1          83 A-IYFCQQSWN--GPLTFGA-GTKLELK  106 (106)
T ss_dssp             E-EEEEEECSS--SSCEECC-CEEEEEC
T ss_pred             C-CcccccccC--ccceECC-CeEEEEC
Confidence            6 999976543  3322222 4577764

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2.2e-06  Score=57.47  Aligned_cols=79  Identities=18%  Similarity=0.275  Sum_probs=54.3

Q ss_pred             eeeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----ee---eeccc--------CCCceEEEccCc---c
Q psy5694          20 KYEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VN---IYLNT--------DTGGKYVVLSSG---D   80 (129)
Q Consensus        20 ~y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~---i~~~~--------~~~~ry~vlpsG---~   80 (129)
                      .+...|.+. .+-+|++|.|.|.+......  ..+.|++-.     ..   |+...        ....||.+..++   .
T Consensus         2 q~~~sP~~~-t~~~G~~vtL~C~~~~~~~~--~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~   78 (114)
T d1akjd_           2 QFRVSPLDR-TWNLGETVELKCQVLLSNPT--SGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFV   78 (114)
T ss_dssp             CEEEECCSC-CCCTTCCEEEEEEECCSSCC--SCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEE
T ss_pred             CeeECCCcE-eccCCCcEEEEEEeCCCcCC--CCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChh
Confidence            355667777 88899999999998654322  247897722     11   22111        123578776554   4


Q ss_pred             EEEeccCCCCCCcceEEEeecc
Q psy5694          81 LYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        81 L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      |.|++++.+|+| .|.|.+...
T Consensus        79 L~I~~l~~~Dsg-~YyCa~~~~   99 (114)
T d1akjd_          79 LTLSDFRRENEG-YYFCSALSN   99 (114)
T ss_dssp             EEESSCCGGGCE-EEEEEEEET
T ss_pred             cEEccCCCCCCE-EEeEeEcCC
Confidence            999999999997 999998754

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.24  E-value=1.4e-06  Score=58.10  Aligned_cols=90  Identities=16%  Similarity=0.204  Sum_probs=55.0

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeec--c---eee-ecc-c----CCCce--EEEccCc---cEEEeccCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD--D---VNI-YLN-T----DTGGK--YVVLSSG---DLYVFNATP   88 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d--~---~~i-~~~-~----~~~~r--y~vlpsG---~L~I~nv~~   88 (129)
                      +.+. .|.+|++|.|.|........  ..+.|.+-  +   ..| ... .    ...+|  +...+++   .|.|.+++.
T Consensus         7 ~~~v-~v~~G~~VtL~C~~~~~~~~--~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   83 (114)
T d2ak4d1           7 QTEI-SVVEKEDVTLDCVYETRDTT--YYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQV   83 (114)
T ss_dssp             CCEE-EEETTCCEEECCEEECSCSS--CEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred             CCeE-EEeCCCCEEEEEEEcCCCcC--ccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeeccccc
Confidence            4444 89999999999986443322  24689772  2   222 111 1    11223  3333444   699999999


Q ss_pred             CCCCcceEEEeecccCCeE-EecccceEEEEe
Q psy5694          89 NDGYKSYRCRTVNKITGES-QASVFQTRLSIT  119 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~ltge~-k~S~~~~~L~V~  119 (129)
                      +|+| .|.|.+.+...+.. .-.+ ..+|+|.
T Consensus        84 ~Dsg-~YyCa~~~~~~~~~l~FG~-GT~L~V~  113 (114)
T d2ak4d1          84 VDSA-VYFCALSGFYNTDKLIFGT-GTRLQVF  113 (114)
T ss_dssp             GGCE-EEEEEEECSBTTSCCEECC-CEEEEEE
T ss_pred             ccCC-CceEeCCCCCCCCcCEECC-CEEEEEE
Confidence            9997 99999877654432 1222 4578874

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.23  E-value=2.3e-06  Score=57.12  Aligned_cols=91  Identities=18%  Similarity=0.256  Sum_probs=58.1

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc----cCCCceEEEcc-----CccEEEeccCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN----TDTGGKYVVLS-----SGDLYVFNATPN   89 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~----~~~~~ry~vlp-----sG~L~I~nv~~~   89 (129)
                      |... .+.+|++|.|.|..+....   ..+.|.+-.     ..| ...    ....+||.+.-     +-.|.|++++.+
T Consensus         7 P~~~-~~~~G~~vtL~C~~~~~~~---~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~   82 (114)
T d2cdea1           7 PQSL-IILEGKNCTLQCNYTVSPF---SNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLS   82 (114)
T ss_dssp             CSEE-EEETTCCCEEEEEECCSCC---SEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGG
T ss_pred             CCEE-EEeCCCCEEEEEEEcCCCc---cCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChh
Confidence            4455 8899999999999876543   347998632     222 211    11235666642     234999999999


Q ss_pred             CCCcceEEEeecccCCeE-EecccceEEEEec
Q psy5694          90 DGYKSYRCRTVNKITGES-QASVFQTRLSITG  120 (129)
Q Consensus        90 D~g~~Y~C~a~N~ltge~-k~S~~~~~L~V~e  120 (129)
                      |+| .|.|.+.+.-.+.. ..-....+|+|.+
T Consensus        83 Dsg-~Y~Ca~~~~~~~~~~~~FG~GT~L~V~p  113 (114)
T d2cdea1          83 DSA-SYICVVSDRGSTLGRLYFGRGTQLTVWP  113 (114)
T ss_dssp             GCS-EEEEEEECSCTTTCCEEECCCEEEEEEC
T ss_pred             hCc-ccceeeecCCCCcCEeEECCCCEEEEEC
Confidence            997 99999987532221 1112234888864

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.19  E-value=4.8e-06  Score=55.61  Aligned_cols=88  Identities=15%  Similarity=0.091  Sum_probs=55.1

Q ss_pred             eEEEeCCeEEEEeeCCCCCCCceeEeEEee--cc---eee-eccc-------CCCceEEEccC---ccEEEeccCCCCCC
Q psy5694          29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQ--DD---VNI-YLNT-------DTGGKYVVLSS---GDLYVFNATPNDGY   92 (129)
Q Consensus        29 ~~V~~GntAvL~C~vp~~~~~~v~v~sW~~--d~---~~i-~~~~-------~~~~ry~vlps---G~L~I~nv~~~D~g   92 (129)
                      +.|.+|++|.|.|........   .+.|++  .+   ..| ....       ....++....+   ..|.|+|++.+|+|
T Consensus        10 v~v~~G~svtl~C~~~~~~~~---~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg   86 (115)
T d1i9ea_          10 VTVSEGASLQLRCKYSYSATP---YLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSA   86 (115)
T ss_dssp             EEEETTSCEEECCEEECSSCC---EEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCE
T ss_pred             EEECCCCCEEEEEEEcCCCCC---CEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccccc
Confidence            388999999999998655433   457876  22   222 1110       01123333433   35999999999997


Q ss_pred             cceEEEeecccCCeEEecccceEEEEecCC
Q psy5694          93 KSYRCRTVNKITGESQASVFQTRLSITGKL  122 (129)
Q Consensus        93 ~~Y~C~a~N~ltge~k~S~~~~~L~V~ep~  122 (129)
                       .|.|.+... +....-.. ..+|+|.+..
T Consensus        87 -~YyCa~~~~-~~~~~FG~-GT~L~V~p~~  113 (115)
T d1i9ea_          87 -VYFCAVSGF-ASALTFGS-GTKVIVLPYI  113 (115)
T ss_dssp             -EEEEEEEET-TEEEEECC-CEEEEEECCC
T ss_pred             -eecccccCC-CCCCEECC-CEEEEEecCC
Confidence             999987643 12322233 5699998643

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.18  E-value=7.5e-06  Score=54.54  Aligned_cols=89  Identities=13%  Similarity=0.147  Sum_probs=56.4

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCC-CCceeEeEEeecc-----eeeec-----ccCCCceEEEccC---ccEEEeccCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYM-SEYIIVTSWIQDD-----VNIYL-----NTDTGGKYVVLSS---GDLYVFNATPND   90 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~-~~~v~v~sW~~d~-----~~i~~-----~~~~~~ry~vlps---G~L~I~nv~~~D   90 (129)
                      +... .|-.|.+|.|.|...+.. .+  ..+.|.+-.     ..|.-     .....+|+....+   -.|.|++++.+|
T Consensus         7 p~s~-~v~~G~svtl~C~~s~~~~~~--~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~D   83 (111)
T d1rzfl1           7 PPSV-SAAPGQKVTISCSGSSSNIGN--NDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGD   83 (111)
T ss_dssp             CSEE-EECTTSCEEEEEECCCCCCCT--SCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             Ccce-EeCCCCCEEEEEEECCcCCcC--CcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeecccc
Confidence            4444 889999999999986543 22  248998632     22211     1122457766544   349999999999


Q ss_pred             CCcceEEEeecccCCeEEecccceEEEE
Q psy5694          91 GYKSYRCRTVNKITGESQASVFQTRLSI  118 (129)
Q Consensus        91 ~g~~Y~C~a~N~ltge~k~S~~~~~L~V  118 (129)
                      ++ .|.|.+.....+...--. ..+|+|
T Consensus        84 sa-~YyCA~~~~~~~~~~FG~-GT~ltV  109 (111)
T d1rzfl1          84 EA-DYYCGTWDSSLSAVVFGG-GSKVTV  109 (111)
T ss_dssp             CS-EEEEEEEETTTTEEEEBC-CEEEEE
T ss_pred             Cc-ceEEeecCCCCCCCEECC-CeEEEE
Confidence            97 999998755433322222 446666

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=1.9e-06  Score=56.52  Aligned_cols=79  Identities=15%  Similarity=0.151  Sum_probs=51.3

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEe
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQA  109 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~  109 (129)
                      .|..|..++|+|+.+...    ....|.||+..-..     .+-.-....+..|.+|+.+|+| .|+|.....-..-+..
T Consensus        14 ~V~~G~~VTL~C~~~~~~----~~f~L~Keg~~~~~-----~~~~~~~~a~F~i~~v~~~~~G-~Y~C~~~~~~~~wS~~   83 (93)
T d1olla2          14 EVISGEKVTFYCRLDTAT----SMFLLLKEGRSSHV-----QRGYGKVQAEFPLGPVTTAHRG-TYRCFGSYNNHAWSFP   83 (93)
T ss_dssp             EEETTCEEEEEEECSSSC----SEEEEEEESSSCEE-----EEEECSSEEEEEEEECCGGGCE-EEEEECEEETTEECCC
T ss_pred             cccCCCcEEEEECCCCCC----CEEEEEECCCccce-----eecCCCceeEEEecccChhcCc-eEEEEeECCCCCcCCC
Confidence            588999999999976433    34688888721100     0000012357999999999997 9999865432122233


Q ss_pred             cccceEEEEe
Q psy5694         110 SVFQTRLSIT  119 (129)
Q Consensus       110 S~~~~~L~V~  119 (129)
                      |+ +..|+|+
T Consensus        84 Sd-pLeL~Vt   92 (93)
T d1olla2          84 SE-PVKLLVT   92 (93)
T ss_dssp             CC-CEEEEEE
T ss_pred             CC-CEEEEee
Confidence            55 7788886

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.17  E-value=1.2e-05  Score=53.38  Aligned_cols=85  Identities=20%  Similarity=0.246  Sum_probs=53.4

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-e--c------ccCCCceEEEc-cC---ccEEEeccCCCCC
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-Y--L------NTDTGGKYVVL-SS---GDLYVFNATPNDG   91 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~--~------~~~~~~ry~vl-ps---G~L~I~nv~~~D~   91 (129)
                      .+-+|++|.|.|......    ..+.|++-.     +.| .  .      .....+|+... ++   -.|.|.+++.+|.
T Consensus        10 ~~~~G~svtl~C~~~~~~----~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   85 (112)
T d1kgce1          10 VAKRGQDVALRCDPISGH----VSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQEDS   85 (112)
T ss_dssp             EEETTCCEEEEEECCTTC----CEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGGGC
T ss_pred             EECCCCCEEEEEEECCCC----CEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcCCC
Confidence            678999999999854322    357898721     122 1  1      11234566654 23   3499999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEec
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      + .|.|.+...-..+..--. ..+|+|.|
T Consensus        86 a-~YyCa~~~~~~~~~~FG~-GT~LtV~d  112 (112)
T d1kgce1          86 A-VYLCASSLGQAYEQYFGP-GTRLTVTE  112 (112)
T ss_dssp             E-EEEEEEESSTTSCCEECC-CEEEEEES
T ss_pred             E-EEEEeeeCCCCCCcEECc-CEEEEEeC
Confidence            6 999998643222322222 55888875

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.14  E-value=1.2e-05  Score=53.31  Aligned_cols=86  Identities=19%  Similarity=0.269  Sum_probs=56.5

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----ee-eecc----cCCCceEEEccCcc---EEEeccCCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VN-IYLN----TDTGGKYVVLSSGD---LYVFNATPNDG   91 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~-i~~~----~~~~~ry~vlpsG~---L~I~nv~~~D~   91 (129)
                      |... .+-.|++|.|.|........   .+.|.+-.     .. +...    ....+|+.+..++.   |.|+|++.+|+
T Consensus         7 P~~l-~~~~G~svtl~C~~s~~~~~---~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~Ds   82 (106)
T d1a0ql1           7 PSSL-SASLGGKVTITCKASQDIKK---YIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDI   82 (106)
T ss_dssp             CSEE-EECTTCCEEEEEEESSCCTT---CEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             CCEE-EECCCCCEEEEEEcCCCCCC---CeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCC
Confidence            4444 78899999999987655443   37897731     12 2211    12245777765554   99999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEe
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      + .|.|.+.+.   ...-- ...+|+|+
T Consensus        83 A-~YyCa~~~~---~~~FG-~GT~LtVk  105 (106)
T d1a0ql1          83 A-TYYCLQYYN---LRTFG-GGTKLEIK  105 (106)
T ss_dssp             S-EEEEEECSS---SCEEC-CCEEEEEC
T ss_pred             E-eEEEEEeCC---CCeEC-CCeEEEEc
Confidence            7 999998643   21222 25588876

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.14  E-value=7.6e-06  Score=54.77  Aligned_cols=91  Identities=18%  Similarity=0.080  Sum_probs=56.8

Q ss_pred             eeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc----cCCCceEEEc--c---CccEEEeccCCCC
Q psy5694          26 NYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN----TDTGGKYVVL--S---SGDLYVFNATPND   90 (129)
Q Consensus        26 ~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~----~~~~~ry~vl--p---sG~L~I~nv~~~D   90 (129)
                      +..+.|.+|++|.|.|........   .+.|.|..     +.| ...    .....||.+.  +   +-.|.|++++.+|
T Consensus         8 ~~~v~v~~G~~vtL~C~~~~~~~~---~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   84 (115)
T d1lp9e1           8 EGLVTLTEGLPVMLNCTYQSTYSP---FLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSD   84 (115)
T ss_dssp             CSEEEEETTSCEEECEEEECSSSC---CEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGG
T ss_pred             CCeEEECCCCCEEEEEEEeCCCcC---CeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeecccccccc
Confidence            334489999999999998765543   47997742     222 111    1124566664  2   2349999999999


Q ss_pred             CCcceEEEeecccCCeEE-ecccceEEEEec
Q psy5694          91 GYKSYRCRTVNKITGESQ-ASVFQTRLSITG  120 (129)
Q Consensus        91 ~g~~Y~C~a~N~ltge~k-~S~~~~~L~V~e  120 (129)
                      +| .|.|.+...-.+-.+ .-....+|+|.+
T Consensus        85 sg-~YyCa~~~~~~~~~~~~FG~GT~L~V~p  114 (115)
T d1lp9e1          85 SA-LYYCALFLASSSFSKLVFGQGTSLSVVP  114 (115)
T ss_dssp             CE-EEEEEEEECSSSSCEEEECCCEEEEEEC
T ss_pred             Cc-cceEEEEcCCCCcCeeEECCCEEEEEEc
Confidence            97 999987643222111 112255888864

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.13  E-value=9.2e-06  Score=54.37  Aligned_cols=87  Identities=18%  Similarity=0.257  Sum_probs=54.9

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e---ee-ecc----cCCCceEEEcc---CccEEEeccCCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NI-YLN----TDTGGKYVVLS---SGDLYVFNATPNDG   91 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~---~i-~~~----~~~~~ry~vlp---sG~L~I~nv~~~D~   91 (129)
                      |... .+-.|.+|.|.|....+...   .+.|++..  .   .| ...    .....|+....   +..|.|+|++.+|+
T Consensus         8 P~s~-~~~~G~svtl~C~~s~~~~~---~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   83 (107)
T d1c5cl1           8 PSSL-SASLGERVSLTCRTSQEISG---YLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDF   83 (107)
T ss_dssp             CSEE-EECTTCCEEEEEEESSCCTT---CEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCEE-EECCCCCEEEEEEeCCCCCC---CEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCC
Confidence            4444 78899999999997655533   37898732  1   12 111    11234565544   34699999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEe
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      + .|.|.+.+..  ...--. ..+|+|+
T Consensus        84 a-~YyCa~~~~~--~~~FG~-GT~LtVk  107 (107)
T d1c5cl1          84 A-DYYCLQYASF--PRTFGG-GTKLEIK  107 (107)
T ss_dssp             S-EEEEEECSSS--SCEECC-CEEEEEC
T ss_pred             e-EEEEecCcCC--cCeECC-CEEEEEC
Confidence            7 9999876542  212222 4477764

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.13  E-value=1.3e-05  Score=53.11  Aligned_cols=87  Identities=18%  Similarity=0.292  Sum_probs=56.2

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc----cCCCceEEEccCc---cEEEeccCCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN----TDTGGKYVVLSSG---DLYVFNATPNDG   91 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~----~~~~~ry~vlpsG---~L~I~nv~~~D~   91 (129)
                      |... .+..|++|.|.|........   .+.|++-.     +.| ...    .....||.+..++   .|.|++++.+|+
T Consensus         7 P~sl-~~~~G~svtL~C~~~~~~~~---~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   82 (106)
T d1op3k1           7 PSTL-SASVGDTITITCRASQSIET---WLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDF   82 (106)
T ss_dssp             CSEE-EECTTCEEEEEEEESSCCTT---CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGC
T ss_pred             CCeE-EECCCCCEEEEEEeCCCCCC---cEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCC
Confidence            3444 78899999999998654432   37897742     222 111    1234577765433   499999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEe
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      + .|.|.+.+.  ....-.+ ..+|+|+
T Consensus        83 a-~YyCa~~~~--~~~~FG~-GT~LtVk  106 (106)
T d1op3k1          83 A-TYHCQHYAG--YSATFGQ-GTRVEIK  106 (106)
T ss_dssp             S-EEEEEEECS--SCEEECC-CEEEEEC
T ss_pred             C-cEeeeeCCC--CccEECC-CEEEEEC
Confidence            7 999987753  2322332 5577774

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.12  E-value=7e-06  Score=55.65  Aligned_cols=75  Identities=16%  Similarity=0.311  Sum_probs=49.6

Q ss_pred             eeEeeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeec--ce-------eeeccc-----------CCCceEEEc-cCc
Q psy5694          21 YEINVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD--DV-------NIYLNT-----------DTGGKYVVL-SSG   79 (129)
Q Consensus        21 y~~~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d--~~-------~i~~~~-----------~~~~ry~vl-psG   79 (129)
                      ....|+.. .+..|.+|.|.|.+.....   ..+.|++-  +.       .+....           ....|+... ++|
T Consensus         4 ~~~~P~~~-~~~~G~~vtL~C~~~~~~~---~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~   79 (122)
T d1nezg_           4 LRIFPKKM-DAELGQKVDLVCEVLGSVS---QGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTN   79 (122)
T ss_dssp             EEEESSCE-EECTTCCEEEEEEEESCCS---SCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETT
T ss_pred             eEEcCCEE-EECCCCCEEEEEEEcCccC---CCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCC
Confidence            34456666 8899999999999866543   34789761  11       111110           112355443 444


Q ss_pred             ---cEEEeccCCCCCCcceEEEee
Q psy5694          80 ---DLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        80 ---~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                         .|.|.|++.+|+| .|.|.+.
T Consensus        80 ~~~~L~I~~~~~~Dsg-~YyCa~~  102 (122)
T d1nezg_          80 NKYVLTLNKFSKENEG-YYFCSVI  102 (122)
T ss_dssp             TEEEEEESSCCGGGCE-EEEEEEE
T ss_pred             CEeEEEEcccccCCCE-EEEeeEe
Confidence               4999999999997 9999876

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.11  E-value=1.1e-05  Score=53.73  Aligned_cols=83  Identities=18%  Similarity=0.301  Sum_probs=54.1

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eeeec-c----cCCCceEEEcc---CccEEEeccCCCCCCcceE
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYL-N----TDTGGKYVVLS---SGDLYVFNATPNDGYKSYR   96 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i~~-~----~~~~~ry~vlp---sG~L~I~nv~~~D~g~~Y~   96 (129)
                      .+-.|++|.|.|........   .+.|++-.     ..|.. .    .....||....   +..|.|++++.+|.+ .|.
T Consensus        12 ~~~~G~svtl~C~~s~~~~~---~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA-~Yy   87 (107)
T d1mexl1          12 STSLGNRVSVTCKASQNVGT---NVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLA-EYF   87 (107)
T ss_dssp             EECTTSCEEEEEEESSCCTT---CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCS-EEE
T ss_pred             EECCCCCEEEEEEeCCCCCC---ceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecce-eEE
Confidence            77889999999997654432   47998732     22211 1    12346777643   345999999999996 999


Q ss_pred             EEeecccCCeEEecccceEEEEe
Q psy5694          97 CRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        97 C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      |.+.+..  ...--+ ..+|+|+
T Consensus        88 Ca~~~~~--~~~FG~-GT~LtVk  107 (107)
T d1mexl1          88 CQQYNSY--PYTFGG-GTKLEIK  107 (107)
T ss_dssp             EEECSSS--SCEECC-CEEEEEC
T ss_pred             EeECCCC--CceECC-CEEEEEC
Confidence            9876532  222222 4577774

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.11  E-value=6.9e-06  Score=54.99  Aligned_cols=73  Identities=19%  Similarity=0.346  Sum_probs=48.9

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eeeecccCCCceEEEcc---C--ccEEEeccCCCCCCcc
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYLNTDTGGKYVVLS---S--GDLYVFNATPNDGYKS   94 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i~~~~~~~~ry~vlp---s--G~L~I~nv~~~D~g~~   94 (129)
                      |... .+.+|++|.|.|......-+ ...+.|++-.     ..+.   ..++|+.+.-   +  -.|.|.|++.+|++ .
T Consensus         7 P~s~-~~~~G~svtL~C~~s~~~~~-~~~~~Wyrq~~g~~~~~~~---~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa-~   80 (113)
T d1vesa_           7 PRTA-TKETGESLTINCVLRDASFE-LKDTGWYRTKLGSTNEQSI---SIGGRYVETVNKGSKSFSLRISDLRVEDSG-T   80 (113)
T ss_dssp             CSEE-EECTTCCEEEEEEEESCSSC-CCEEEEEEEETTCCCCEEC---CCBTTEEEEEETTTTEEEEEECSCCGGGCE-E
T ss_pred             CCEE-EEcCCCCEEEEEEECCCccc-CCccceeeeeccccceeee---eecccccceeECCCCceeeeecccccCCcc-e
Confidence            4445 78899999999988543211 2357897632     1221   2356666531   2  25999999999997 9


Q ss_pred             eEEEeeccc
Q psy5694          95 YRCRTVNKI  103 (129)
Q Consensus        95 Y~C~a~N~l  103 (129)
                      |.|.+....
T Consensus        81 YyCa~~~~~   89 (113)
T d1vesa_          81 YKCQAFYSL   89 (113)
T ss_dssp             EEEEEEEEE
T ss_pred             EeeeeeccC
Confidence            999986543

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.11  E-value=1.2e-05  Score=53.45  Aligned_cols=88  Identities=20%  Similarity=0.289  Sum_probs=53.7

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee---e---cc-------cCCCceEEEc--c---Ccc
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI---Y---LN-------TDTGGKYVVL--S---SGD   80 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i---~---~~-------~~~~~ry~vl--p---sG~   80 (129)
                      .|... .|.+|.+|.|.|.+......  ..+.|++-.     ..|   .   ..       .-..+|+.+.  +   +..
T Consensus         4 ~P~~~-~v~~G~sv~l~C~~~~~~~~--~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   80 (115)
T d2atpb1           4 TPSSL-LVQTNHTAKMSCEVKSISKL--TSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPF   80 (115)
T ss_dssp             ECSEE-EECTTSCEEEEEECCSSCCS--SEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCE
T ss_pred             eCCcE-EEcCCCCEEEEEEEeCCCCC--CceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEE
Confidence            34445 88999999999998653322  347897632     211   1   10       0123455442  3   235


Q ss_pred             EEEeccCCCCCCcceEEEeecccCCeEEecccceEEEE
Q psy5694          81 LYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI  118 (129)
Q Consensus        81 L~I~nv~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V  118 (129)
                      |.|.+++.+|+| .|.|.+.+.  ++..--. ..+|+|
T Consensus        81 L~I~~~~~~Dsg-~Y~Ca~~~~--~~~~fG~-GT~L~V  114 (115)
T d2atpb1          81 LSIMNVKPEDSD-FYFCATVGS--PKMVFGT-GTKLTV  114 (115)
T ss_dssp             EEECSCCGGGCE-EEEEEEECS--SCEEECC-CEEEEE
T ss_pred             EeecccCCCCCc-EEEEeEcCC--CCCEECc-CEEEEE
Confidence            999999999997 999988643  3433332 446665

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.10  E-value=5e-06  Score=55.56  Aligned_cols=91  Identities=8%  Similarity=-0.017  Sum_probs=54.7

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e---ee---eccc----CCCceEE-Ecc---CccEEEeccCCCCCCc
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NI---YLNT----DTGGKYV-VLS---SGDLYVFNATPNDGYK   93 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~---~i---~~~~----~~~~ry~-vlp---sG~L~I~nv~~~D~g~   93 (129)
                      .+..|++|.|.|........--..+.|++..  .   .+   ....    ..+.++. ..+   +-.|.|.|++.+|.+ 
T Consensus        10 ~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa-   88 (117)
T d1dqta_          10 LASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDTG-   88 (117)
T ss_dssp             ECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGGGCE-
T ss_pred             EEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccccCE-
Confidence            7788999999999754322112346898732  1   12   1110    1122222 222   346999999999997 


Q ss_pred             ceEEEeecccCCeE-EecccceEEEEecC
Q psy5694          94 SYRCRTVNKITGES-QASVFQTRLSITGK  121 (129)
Q Consensus        94 ~Y~C~a~N~ltge~-k~S~~~~~L~V~ep  121 (129)
                      .|.|.......+.- ..-....+|+|.||
T Consensus        89 ~YyCa~~~~~~~~~~~~fG~GT~L~V~dp  117 (117)
T d1dqta_          89 LYLCKVELMYPPPYFVGMGNGTQIYVIDP  117 (117)
T ss_dssp             EEEEEEEEEESSSCEEEECSCEEEECCCC
T ss_pred             eEEEEEecCcCCCceeEECCCEEEEEECC
Confidence            99999875443321 12222669999887

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.09  E-value=4.6e-06  Score=55.97  Aligned_cols=90  Identities=20%  Similarity=0.251  Sum_probs=55.8

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEee--cc---eee-ecc-------cCCCceEEEcc---C--ccEEEecc
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQ--DD---VNI-YLN-------TDTGGKYVVLS---S--GDLYVFNA   86 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~--d~---~~i-~~~-------~~~~~ry~vlp---s--G~L~I~nv   86 (129)
                      +... .|.+|.+|.|.|........  ..+.|++  .+   ..| ...       ....+||.+..   +  -.|.|.++
T Consensus         7 p~~~-~~~~G~~vtL~C~~~~~~~~--~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~   83 (116)
T d1tvda_           7 SPDQ-TVASGSEVVLLCTYDTVYSN--PDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPV   83 (116)
T ss_dssp             SCCE-EEETTCCEEECCEEECCSSS--CCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSC
T ss_pred             CCCE-EEcCCCCEEEEEEEcCCccC--CcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCc
Confidence            3444 88999999999987544322  3478976  22   222 111       11246887642   2  25999999


Q ss_pred             CCCCCCcceEEEeecccCCe-EEecccceEEEEe
Q psy5694          87 TPNDGYKSYRCRTVNKITGE-SQASVFQTRLSIT  119 (129)
Q Consensus        87 ~~~D~g~~Y~C~a~N~ltge-~k~S~~~~~L~V~  119 (129)
                      +.+|.| .|.|......... ..-.. ..+|+|+
T Consensus        84 ~~~Dsg-~YyCa~~~~~~~~~~~FG~-GT~L~V~  115 (116)
T d1tvda_          84 RTEDSA-TYYCAFTLPPPTDKLIFGK-GTRVTVE  115 (116)
T ss_dssp             CGGGCE-EEEEEEECTTTTCCEEECC-CEEEEEE
T ss_pred             cccccc-cceeeEecCCCCceeEECc-CEEEEEE
Confidence            999997 9999877543222 11122 4578884

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=2.6e-06  Score=56.61  Aligned_cols=91  Identities=13%  Similarity=0.138  Sum_probs=53.6

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeec--c---eeeecc-c-------CCCceEEEc--c-Cc--cEEEecc
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD--D---VNIYLN-T-------DTGGKYVVL--S-SG--DLYVFNA   86 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d--~---~~i~~~-~-------~~~~ry~vl--p-sG--~L~I~nv   86 (129)
                      ++..+.|.+|+++.|.|......-. ...+.|.+-  +   ..|... .       ...+||.+.  + .|  .|.|.|+
T Consensus         5 pe~~~~v~eG~svtl~C~~~~~~~~-~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l   83 (113)
T d1smoa_           5 TEEKYELKEGQTLDVKCDYTLEKFA-SSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNL   83 (113)
T ss_dssp             SEEEEECCTTCCEEEEEECCHHHHT-TSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSC
T ss_pred             ccCcEEEccCCCEEEEEEeCCCCCC-CCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccC
Confidence            3444367789999999987532101 135789873  2   222111 0       012578764  2 33  3999999


Q ss_pred             CCCCCCcceEEEeecccCCeEEecccceEEEE
Q psy5694          87 TPNDGYKSYRCRTVNKITGESQASVFQTRLSI  118 (129)
Q Consensus        87 ~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V  118 (129)
                      +.+|.| .|.|.........-... ...+|+|
T Consensus        84 ~~~Dsg-~Y~Cav~~~~~~~~~~~-~~~~L~V  113 (113)
T d1smoa_          84 QVEDSG-LYQCVIYQPPKEPHMLF-DRIRLVV  113 (113)
T ss_dssp             CGGGCE-EEEEEECCTTSCCEECS-CEEEEEC
T ss_pred             CcccCc-eEEEEEECCCCCCEEEE-CCEEEEC
Confidence            999997 99998865532222222 2556654

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.09  E-value=9e-06  Score=53.88  Aligned_cols=84  Identities=18%  Similarity=0.217  Sum_probs=55.3

Q ss_pred             eEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc----cCCCceEEEcc---CccEEEeccCCCCCCcce
Q psy5694          29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN----TDTGGKYVVLS---SGDLYVFNATPNDGYKSY   95 (129)
Q Consensus        29 ~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~----~~~~~ry~vlp---sG~L~I~nv~~~D~g~~Y   95 (129)
                      +.|-.|++|.|.|.......   ..+.|++-.     ..| ...    ....+||....   +..|.|.+++.+|++ .|
T Consensus        11 l~v~~G~~vtL~C~~~~~~~---~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa-~Y   86 (107)
T d1j1pl_          11 LSVTPGNSVSLSCRASQSIG---NNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFG-MY   86 (107)
T ss_dssp             EEECTTCCEEEEEEESSCCT---TCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE-EE
T ss_pred             EEECCCCCEEEEEEecCCCC---cceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCE-EE
Confidence            37889999999999765432   347897732     112 111    12346787754   345999999999996 99


Q ss_pred             EEEeecccCCeEEecccceEEEEe
Q psy5694          96 RCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        96 ~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      .|.+.+..  ...--+ ..+|+|+
T Consensus        87 yCa~~~~~--~~~FG~-GT~LtVk  107 (107)
T d1j1pl_          87 FCQQANSW--PYTFGG-GTKLEIK  107 (107)
T ss_dssp             EEEECSSS--SCEECC-CEEEEEC
T ss_pred             EEEcCCCC--ccEECC-CeEEEEC
Confidence            99876543  323332 4577774

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=5e-06  Score=55.74  Aligned_cols=91  Identities=12%  Similarity=0.055  Sum_probs=55.3

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e---ee---ecccC----CCceE-EEccCc---cEEEeccCCCCCCc
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NI---YLNTD----TGGKY-VVLSSG---DLYVFNATPNDGYK   93 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~---~i---~~~~~----~~~ry-~vlpsG---~L~I~nv~~~D~g~   93 (129)
                      .+..|++|.|.|........--..++|++..  .   .|   .....    .+.++ ...+++   .|.|+|++.+|.+ 
T Consensus        10 ~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa-   88 (118)
T d1i8lc_          10 LASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTG-   88 (118)
T ss_dssp             ECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGGGCE-
T ss_pred             EEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccCCCE-
Confidence            7788999999999754321111357898843  1   12   11100    11122 122333   5999999999997 


Q ss_pred             ceEEEeecccCCeEE-ecccceEEEEecC
Q psy5694          94 SYRCRTVNKITGESQ-ASVFQTRLSITGK  121 (129)
Q Consensus        94 ~Y~C~a~N~ltge~k-~S~~~~~L~V~ep  121 (129)
                      .|.|.+.....+.-. .-....+|+|.||
T Consensus        89 ~YyCa~~~~~~~~~~~~fG~GT~L~V~d~  117 (118)
T d1i8lc_          89 LYICKVELMYPPPYYLGIGNGAQIYVIDP  117 (118)
T ss_dssp             EEEEEEEEEESSSCEEEECCCEEEECCCC
T ss_pred             EEEEeEecccCCCceeEECCCEEEEEEcC
Confidence            999988766544322 1122668888886

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.07  E-value=9e-06  Score=54.04  Aligned_cols=69  Identities=16%  Similarity=0.328  Sum_probs=48.2

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeec--c---eeeecc-----cCCCceEEEccCcc---EEEeccCCCCCCcceE
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQD--D---VNIYLN-----TDTGGKYVVLSSGD---LYVFNATPNDGYKSYR   96 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d--~---~~i~~~-----~~~~~ry~vlpsG~---L~I~nv~~~D~g~~Y~   96 (129)
                      .|-.|++|.|.|........   .+.|++-  +   ..|...     .....||....+|+   |.|+|++.+|++ .|.
T Consensus        12 sv~~G~svtl~C~~s~~~~~---~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa-~Yy   87 (106)
T d1i8ka_          12 SVATGEKVTIRCMTSTDIDD---DMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVG-DYY   87 (106)
T ss_dssp             ECCTTCCEEEEEEESSCCTT---CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE-EEE
T ss_pred             EECCCCCEEEEEEeCCCCCc---cEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCE-EEe
Confidence            78899999999987655433   3799863  2   122110     12346777654443   999999999997 999


Q ss_pred             EEeecc
Q psy5694          97 CRTVNK  102 (129)
Q Consensus        97 C~a~N~  102 (129)
                      |.+.+.
T Consensus        88 Ca~~~~   93 (106)
T d1i8ka_          88 CLQSFN   93 (106)
T ss_dssp             EEECSS
T ss_pred             EecCcc
Confidence            987754

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.07  E-value=1.5e-05  Score=52.97  Aligned_cols=87  Identities=16%  Similarity=0.222  Sum_probs=56.1

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eeee-cc----cCCCceEEEccC---ccEEEeccCCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIY-LN----TDTGGKYVVLSS---GDLYVFNATPNDG   91 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i~-~~----~~~~~ry~vlps---G~L~I~nv~~~D~   91 (129)
                      |... .|-.|++|.|.|........   .+.|.+-.     ..|. ..    ....+||....+   -.|.|.+++.+|.
T Consensus         8 P~sl-~~~~G~svtl~C~~s~~~~~---~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d1d5il1           8 PSSM-YASLGERVTITCKASQDINS---YLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDM   83 (107)
T ss_dssp             CSEE-EECTTCCEEEEEEESSCCTT---CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCEE-EECCCCCEEEEEEcCCCCCC---ccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCC
Confidence            4444 78899999999998655433   47897632     2221 11    122457766533   4599999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEe
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      + .|.|.+.+..  ...--. ..+|+|+
T Consensus        84 a-~YyCa~~~~~--~~~FG~-GTkLtVk  107 (107)
T d1d5il1          84 G-IYYCLQYDEF--PYTFGS-GTKLEIK  107 (107)
T ss_dssp             E-EEEEEECSSS--SCEECC-CEEEEEC
T ss_pred             E-EEEeeeccCC--cceECC-CEEEEEC
Confidence            6 9999877642  222222 4577774

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.06  E-value=1.1e-05  Score=53.48  Aligned_cols=87  Identities=18%  Similarity=0.297  Sum_probs=56.7

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc----cCCCceEEEccCc---cEEEeccCCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN----TDTGGKYVVLSSG---DLYVFNATPNDG   91 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~----~~~~~ry~vlpsG---~L~I~nv~~~D~   91 (129)
                      |... .+.+|++|.|.|.......   ..+.|++-.     +.| ...    .....||....+|   .|.|++++.+|.
T Consensus        10 P~~l-~~~~G~svtL~C~~s~~~~---~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Ds   85 (109)
T d1bwwa_          10 PSSL-SASVGDRVTITCQASQDII---KYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDI   85 (109)
T ss_dssp             CSEE-EECTTCCEEEEEEESSCCT---TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCEE-EECCCCCEEEEEEecCCCC---CcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcC
Confidence            3334 7889999999999865443   346897732     222 111    1234677775544   499999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEe
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      + .|.|.+.+.  ++..--. ..+|+|+
T Consensus        86 a-~YyCA~~~~--~~~~FG~-GT~LtVt  109 (109)
T d1bwwa_          86 A-TYYCQQYQS--LPYTFGQ-GTKLQIT  109 (109)
T ss_dssp             E-EEEEEECSS--SSCEECC-CEEEEEC
T ss_pred             c-eEEEeecCC--CccEECC-CEEEEEC
Confidence            6 999997653  3333332 5577774

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.05  E-value=1.3e-05  Score=53.19  Aligned_cols=91  Identities=21%  Similarity=0.310  Sum_probs=55.6

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e----eeeccc----CCCceEEE--cc---CccEEEeccCC
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V----NIYLNT----DTGGKYVV--LS---SGDLYVFNATP   88 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~----~i~~~~----~~~~ry~v--lp---sG~L~I~nv~~   88 (129)
                      .|.+. .|..|.+|.|.|..+...   ...+.|++-.  .    .|....    ...+|+..  ..   +-.|.|+|++.
T Consensus         6 ~P~~v-~v~~G~sv~L~C~~s~~~---~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   81 (113)
T d2bnqd1           6 IPAAL-SVPEGENLVLNCSFTDSA---IYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQP   81 (113)
T ss_dssp             SSSEE-EEETTCCEEEEEEESCCC---EEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred             eCCEE-EEcCCCCEEEEEEEecCc---ccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCC
Confidence            35555 889999999999987654   2458898732  1    121110    11234433  22   23699999999


Q ss_pred             CCCCcceEEEeecccCCeEE-ecccceEEEEe
Q psy5694          89 NDGYKSYRCRTVNKITGESQ-ASVFQTRLSIT  119 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~ltge~k-~S~~~~~L~V~  119 (129)
                      +|.| .|.|.+.....+..+ .=....+|+|+
T Consensus        82 ~Dsg-~YyCa~~~~~~~~~~~~FG~GT~l~V~  112 (113)
T d2bnqd1          82 GDSA-TYLCAVRPTSGGSYIPTFGRGTSLIVH  112 (113)
T ss_dssp             GGCE-EEEEEEEESSSSCCCCEECCCEEEEEE
T ss_pred             CCCc-EEeEeEecCCCCcccceECCCeEEEEE
Confidence            9997 999999865432211 10113478884

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.04  E-value=8.9e-06  Score=52.57  Aligned_cols=80  Identities=21%  Similarity=0.364  Sum_probs=50.6

Q ss_pred             CCeEEEEeeCCCCCCCceeEeEEeecc-----eeee---cc-cCCCceEEEc--cCc---cEEEeccCCCCCCcceEEEe
Q psy5694          34 GNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIY---LN-TDTGGKYVVL--SSG---DLYVFNATPNDGYKSYRCRT   99 (129)
Q Consensus        34 GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i~---~~-~~~~~ry~vl--psG---~L~I~nv~~~D~g~~Y~C~a   99 (129)
                      |.+|.|.|.......   ..+.|.+-.     +.|.   .. ....+||...  +++   .|.|++++.+|+| .|.|.+
T Consensus         1 G~~vtl~C~~~~~~~---~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg-~YyCa~   76 (94)
T d2gj6d1           1 GAIASLNCTYSDRGS---QSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSA-TYLCAV   76 (94)
T ss_dssp             TSCEEEEEEECCTTC---CEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCE-EEEEEE
T ss_pred             CccEEEEEEEccccC---CcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCc-cceeeE
Confidence            889999999876543   347897722     2221   11 1224577653  333   4999999999997 999998


Q ss_pred             ecccCCeEEecccceEEEE
Q psy5694         100 VNKITGESQASVFQTRLSI  118 (129)
Q Consensus       100 ~N~ltge~k~S~~~~~L~V  118 (129)
                      ...-.++..--+ ..+|+|
T Consensus        77 ~~~~~~~~~FG~-GT~L~V   94 (94)
T d2gj6d1          77 TTDSWGKLQFGA-GTQVVV   94 (94)
T ss_dssp             ESSTTSCCEECC-CEEEEE
T ss_pred             ecCCCCceEECc-CEEEEc
Confidence            755434433222 446665

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.04  E-value=4e-05  Score=51.14  Aligned_cols=87  Identities=22%  Similarity=0.335  Sum_probs=56.8

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc--e---ee-ecc----cCCCceEEEccCc---cEEEeccCCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD--V---NI-YLN----TDTGGKYVVLSSG---DLYVFNATPNDG   91 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~--~---~i-~~~----~~~~~ry~vlpsG---~L~I~nv~~~D~   91 (129)
                      |... .+-.|++|.|.|........   .+.|++-.  .   .| ...    .....++....+|   .|.|.+++.+|.
T Consensus         8 P~~l-~~~~G~svtL~C~~s~~~~~---~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Ds   83 (108)
T d1jhll_           8 PSYL-VASPGETITINCRASKSISK---SLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDF   83 (108)
T ss_dssp             CSEE-EECTTSCEEEEEEESSCCTT---CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCC
T ss_pred             CCeE-EecCCCCEEEEEEccCCcCC---ceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccc
Confidence            3434 77889999999998765433   37887632  1   12 111    1123456666666   599999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEe
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      + .|.|.+.+.  ++..--. ..+|+|+
T Consensus        84 a-~YyCA~~~~--~~~~FG~-GT~LtVk  107 (108)
T d1jhll_          84 A-MYICQQHNE--YPWTFGG-GTKLEIK  107 (108)
T ss_dssp             S-EEEEEECSS--SSCEECC-CEEEEEC
T ss_pred             e-EEEEeeCCC--cccEECC-CeEEEEc
Confidence            7 999987764  2323332 5588886

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.04  E-value=1.9e-05  Score=52.99  Aligned_cols=88  Identities=18%  Similarity=0.268  Sum_probs=55.7

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-eccc----CCCceEEE--c---cCccEEEeccCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLNT----DTGGKYVV--L---SSGDLYVFNATPN   89 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~~----~~~~ry~v--l---psG~L~I~nv~~~   89 (129)
                      |... .+-+|++|.|.|...+..    ..+.|++-.     ..| ....    ...+|+..  .   .+..|.|.+++.+
T Consensus         7 P~~~-~~~~G~svtl~C~~s~~~----~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   81 (115)
T d1ogad1           7 PQFL-SIQEGENLTVYCNSSSVF----SSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPG   81 (115)
T ss_dssp             CSEE-EEETTCCEEEEEECSSCC----SCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGG
T ss_pred             CCeE-EECCCCCEEEEEEECCCC----ceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCcc
Confidence            4444 889999999999975433    347897721     212 1111    11234333  2   2445999999999


Q ss_pred             CCCcceEEEeecccCCeEEecccceEEEEec
Q psy5694          90 DGYKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        90 D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      |++ .|.|.+.... +...--. ..+|+|++
T Consensus        82 Dsa-~YyCa~~~~~-~~~~FG~-GT~LtV~~  109 (115)
T d1ogad1          82 DTG-LYLCAGAGSQ-GNLIFGK-GTKLSVKP  109 (115)
T ss_dssp             GCE-EEEEEEECTT-SSEEECC-CEEEEEEC
T ss_pred             cee-eEcccccCCC-CCcEECC-CEEEEEec
Confidence            997 9999887543 3322333 56999985

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.02  E-value=2.6e-05  Score=52.65  Aligned_cols=86  Identities=15%  Similarity=0.210  Sum_probs=56.6

Q ss_pred             EEEeCCeEEEEeeCCCCC-CCceeEeEEeecc-----eeeecc-----cCCCceEEEcc---CccEEEeccCCCCCCcce
Q psy5694          30 NVILGNTAVLRCQIPSYM-SEYIIVTSWIQDD-----VNIYLN-----TDTGGKYVVLS---SGDLYVFNATPNDGYKSY   95 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~-~~~v~v~sW~~d~-----~~i~~~-----~~~~~ry~vlp---sG~L~I~nv~~~D~g~~Y   95 (129)
                      .|..|++|.|.|...+.. ..  ..+.|++-.     ..|...     ....+|+.+-.   +..|.|.+++.+|++ .|
T Consensus        11 ~v~~G~svtL~C~~s~~~~~~--~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA-~Y   87 (114)
T d2rhea_          11 SGTPGQRVTISCTGSATDIGS--NSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEA-DY   87 (114)
T ss_dssp             EECTTCCEEEEEECCTTTTTT--SCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCE-EE
T ss_pred             EeCCCCCEEEEEEECCccccC--CcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCc-eE
Confidence            788899999999976542 22  246898732     222111     12245776643   456999999999996 99


Q ss_pred             EEEeecccCCeEEecccceEEEEe
Q psy5694          96 RCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        96 ~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      .|.+...-.+...--. ..+|+|.
T Consensus        88 yCA~~~~~~~~~~FG~-GT~LtVl  110 (114)
T d2rhea_          88 YCAAWNDSLDEPGFGG-GTKLTVL  110 (114)
T ss_dssp             EEEEEETTTTEEEECC-CEEEEEC
T ss_pred             EEeecCCCCCCCEECC-CeEEEEC
Confidence            9998755444433333 5588886

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.99  E-value=2.1e-05  Score=52.72  Aligned_cols=84  Identities=23%  Similarity=0.303  Sum_probs=54.3

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc----cCCCceEEEccCc---cEEEeccCCCCCCcceE
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN----TDTGGKYVVLSSG---DLYVFNATPNDGYKSYR   96 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~----~~~~~ry~vlpsG---~L~I~nv~~~D~g~~Y~   96 (129)
                      .+..|++|.|.|.......   ..+.|.+-.     ..| ...    ....+|+....++   .|.|.+++.+|++ .|.
T Consensus        11 ~~~~G~svtl~C~~~~~~~---~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa-vYy   86 (109)
T d1w72l1          11 SVAPGQTARITCGGNNIGS---RSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEA-DYY   86 (109)
T ss_dssp             EECTTSCEEEEEECTTGGG---SCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCE-EEE
T ss_pred             EECCCCCEEEEEEcCCCCC---cceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCE-EEE
Confidence            7889999999999654332   247897632     222 111    1123566554444   5899999999996 999


Q ss_pred             EEeecccCCeEEecccceEEEE
Q psy5694          97 CRTVNKITGESQASVFQTRLSI  118 (129)
Q Consensus        97 C~a~N~ltge~k~S~~~~~L~V  118 (129)
                      |.+...-+++..--. ..+|+|
T Consensus        87 CA~~~~~~~~~~FG~-GTkLtV  107 (109)
T d1w72l1          87 CQVWDSRTDHWVFGG-GTDLTV  107 (109)
T ss_dssp             EEEEETTTTEEEECC-CEEEEE
T ss_pred             EEecCCCCCCcEECC-CeEEEE
Confidence            998765444432222 457776

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.98  E-value=2.5e-05  Score=51.48  Aligned_cols=83  Identities=18%  Similarity=0.313  Sum_probs=54.7

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeec--c---eee-ec----ccCCCceEEEcc---CccEEEeccCCCCCCcceE
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQD--D---VNI-YL----NTDTGGKYVVLS---SGDLYVFNATPNDGYKSYR   96 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d--~---~~i-~~----~~~~~~ry~vlp---sG~L~I~nv~~~D~g~~Y~   96 (129)
                      .|-.|++|.|.|........   .+.|.+-  +   ..| ..    .....+|+.+..   +..|.|.+++.+|.+ .|.
T Consensus        12 ~v~~G~svtl~C~~s~~~~~---~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa-~Yy   87 (107)
T d1kcvl1          12 GMSVGEAVTLNCKASENVGT---YVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDA-DYY   87 (107)
T ss_dssp             EEETTCCEEEEEEESSCCTT---CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE-EEE
T ss_pred             eECCCCCEEEEEEecCCcCC---ceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCc-eEE
Confidence            78899999999998765543   4899873  2   222 11    112345776642   445999999999996 999


Q ss_pred             EEeecccCCeEEecccceEEEEe
Q psy5694          97 CRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        97 C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      |.+.+.  +...--. ..+|+|+
T Consensus        88 Ca~~~~--~~~~FG~-GT~L~Vk  107 (107)
T d1kcvl1          88 CGQSYS--SPLTFGG-GTKLELK  107 (107)
T ss_dssp             EEECSS--SSCEECC-CEEEEEE
T ss_pred             EEecCC--CceeECC-CEEEEEC
Confidence            987643  3333332 4577774

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=4e-06  Score=55.18  Aligned_cols=80  Identities=15%  Similarity=0.004  Sum_probs=51.9

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccC--CeE
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT--GES  107 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~lt--ge~  107 (129)
                      .|..|.+++|+|+.+....   ....|.||+.....     .+..-....+..|.+|+.+|+| +|+|.......  .-+
T Consensus        15 ~V~~G~~VTL~C~~~~~~~---~~f~L~k~g~~~~~-----~~~~~~~~a~F~l~~v~~~~~G-~Y~C~y~~~~~p~~~S   85 (96)
T d1ucta2          15 VLMPGENISLTCSSAHIPF---DRFSLAKEGELSLP-----QHQSGEHPANFSLGPVDLNVSG-IYRCYGWYNRSPYLWS   85 (96)
T ss_dssp             EECTTCCCEEEEECSSSCC---SEEEEEETTCSSCC-----SEEECSSSEEEECCSCCGGGCE-EEEEEEECTTSTTEEC
T ss_pred             ccCCCCeEEEEEeCCCCCc---eEEEEEECCcccce-----EEcCCCcccEEEEeccccccCc-EEEEEEEcCCCCCCcc
Confidence            6889999999999764332   23678898732111     1110011356899999999997 99999875432  123


Q ss_pred             EecccceEEEEe
Q psy5694         108 QASVFQTRLSIT  119 (129)
Q Consensus       108 k~S~~~~~L~V~  119 (129)
                      ..|+ +..|.|+
T Consensus        86 ~~Sd-~leL~VT   96 (96)
T d1ucta2          86 FPSN-ALELVVT   96 (96)
T ss_dssp             CCCC-CEEEEEC
T ss_pred             CCCC-CEEEEEC
Confidence            3465 7788775

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.98  E-value=2.2e-05  Score=52.41  Aligned_cols=88  Identities=19%  Similarity=0.264  Sum_probs=55.7

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc----cCCCceEEEccCc---cEEEeccCCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN----TDTGGKYVVLSSG---DLYVFNATPNDG   91 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~----~~~~~ry~vlpsG---~L~I~nv~~~D~   91 (129)
                      |... .+.+|++|.|.|........   .+.|++-.     +.| ...    .....||....++   .|.|.+++.+|.
T Consensus         8 P~~l-~~~~G~svtL~C~~s~~~~~---~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DS   83 (109)
T d1mqkl_           8 PVSL-SASVGETVTITCRASENIYS---YLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDF   83 (109)
T ss_dssp             CSEE-EECTTCCEEEEEEESSCCTT---CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCEE-EECCCCCEEEEEEeCCCcCc---ccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCC
Confidence            4444 77889999999997654433   37898822     222 111    1224577765433   499999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEe
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      + .|.|.+.... ....--+ ..+|+|+
T Consensus        84 a-~YyCA~~~~~-~~~~FG~-GT~LtVk  108 (109)
T d1mqkl_          84 G-SYYCQHHYGT-PPLTFGG-GTKLEIK  108 (109)
T ss_dssp             E-EEEEEECSSS-SSCCBCC-CEEEEEC
T ss_pred             e-eEEEeeeCCC-CCcEECC-CEEEEEc
Confidence            7 9999876421 1111122 5588875

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=97.98  E-value=1.8e-05  Score=52.30  Aligned_cols=88  Identities=17%  Similarity=0.271  Sum_probs=55.1

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eeee-cc----cCCCceEEEccCc---cEEEeccCCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIY-LN----TDTGGKYVVLSSG---DLYVFNATPNDG   91 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i~-~~----~~~~~ry~vlpsG---~L~I~nv~~~D~   91 (129)
                      |... .+.+|.+|.|.|........  ..+.|++-.     ..|. ..    ....+|+....++   .|.|+|++.+|+
T Consensus         8 P~~~-~v~~G~tv~l~C~~~~~~~~--~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Ds   84 (108)
T d2fx7l1           8 PGTQ-SLSPGERATLSCRASQSVGN--NKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDF   84 (108)
T ss_dssp             SSEE-EECTTCCEEEEEEESSCCGG--GCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCeE-EECCCCCEEEEEEeecCCCC--ccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheeccc
Confidence            3344 78899999999987543322  347897732     2231 11    1224567665444   399999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEe
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      + .|.|.+.+..  ...--+ ..+|+|+
T Consensus        85 a-~YyCa~~~~~--~~~FG~-GT~LtVk  108 (108)
T d2fx7l1          85 A-VYYCQQYGQS--LSTFGQ-GTKVEVK  108 (108)
T ss_dssp             S-EEEEEECSSS--SCEECC-CEEEEEC
T ss_pred             E-EEeeecCCCC--CCEECC-CEEEEEC
Confidence            7 9999886432  222222 4577774

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.98  E-value=2.6e-05  Score=53.17  Aligned_cols=88  Identities=22%  Similarity=0.264  Sum_probs=54.1

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc-----eee-e--cc-------cCCCceEEEc--cCc---cEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD-----VNI-Y--LN-------TDTGGKYVVL--SSG---DLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~-----~~i-~--~~-------~~~~~ry~vl--psG---~L~I~nv~~   88 (129)
                      .+..|.+|.|.|.+.+. ...+  -+.|++-.     ..| .  ..       ....+||.+.  ++.   .|.|.|++.
T Consensus        12 t~~~g~t~~LsC~~sg~~~s~~--~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~~   89 (123)
T d1hxmb1          12 TKTLSKTARLECVVSGITISAT--SVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEK   89 (123)
T ss_dssp             EEETTCCEEEEEEEESSCTTTS--CEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCG
T ss_pred             EeCCCCCEEEEEEEcCCCcccC--eEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeeccccccc
Confidence            66779999999998654 2332  37897732     222 1  11       1124689875  333   499999999


Q ss_pred             CCCCcceEEEeeccc---CCeEEecccceEEEEec
Q psy5694          89 NDGYKSYRCRTVNKI---TGESQASVFQTRLSITG  120 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~l---tge~k~S~~~~~L~V~e  120 (129)
                      +|.+ .|.|.....-   .+....=....+|+|+|
T Consensus        90 ~Dsa-~YyCA~~~~~~~~~~~~~~FG~GT~LtV~d  123 (123)
T d1hxmb1          90 QDIA-TYYCALWEAQQELGKKIKVFGPGTKLIITD  123 (123)
T ss_dssp             GGCE-EEEEEEEEECSSTTCEEEEECCCEEEEEES
T ss_pred             ccCc-EEEEeeeCCCCCcCCccCEeCCCeEEEEEC
Confidence            9996 9999874322   12211111145888875

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.97  E-value=5.1e-05  Score=50.12  Aligned_cols=88  Identities=18%  Similarity=0.167  Sum_probs=55.7

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc--------cCCCceEEEcc-C---ccEEEecc
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN--------TDTGGKYVVLS-S---GDLYVFNA   86 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~--------~~~~~ry~vlp-s---G~L~I~nv   86 (129)
                      |... .+.+|++|.|.|...+..    ..+.|++-.     +.| ...        ....+||.... +   -.|.|.++
T Consensus         6 P~~~-~~~~G~svtl~C~~~~~~----~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~   80 (111)
T d2esve1           6 PSHS-VIEKGQTVTLRCDPISGH----DNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPA   80 (111)
T ss_dssp             CSEE-EEETTCCEEEEEECCTTC----SEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSC
T ss_pred             CCEE-EECCCCCEEEEEEECCCC----ceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCc
Confidence            4445 788999999999854322    357897632     222 110        11246776653 2   35999999


Q ss_pred             CCCCCCcceEEEeecccCCeEEecccceEEEEec
Q psy5694          87 TPNDGYKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        87 ~~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      +.+|.+ .|.|.+.... ++..--. ..+|+|.|
T Consensus        81 ~~~Dsa-~YyCa~~~~~-~~~~FG~-GT~LtVld  111 (111)
T d2esve1          81 ELEDSG-VYFCASSQDR-DTQYFGP-GTRLTVLE  111 (111)
T ss_dssp             CGGGCE-EEEEEEESSS-SSCEECC-CEEEEEES
T ss_pred             ccCCCc-eEEEeeeCCC-CccEECC-CeEEEEeC
Confidence            999997 9999876432 2222222 55888875

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.97  E-value=1.9e-05  Score=52.62  Aligned_cols=90  Identities=20%  Similarity=0.245  Sum_probs=55.7

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCC-CceeEeEEeec--c---e-eeecc----cCCCceEEEccCc---cEEEeccCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMS-EYIIVTSWIQD--D---V-NIYLN----TDTGGKYVVLSSG---DLYVFNATPND   90 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~-~~v~v~sW~~d--~---~-~i~~~----~~~~~ry~vlpsG---~L~I~nv~~~D   90 (129)
                      |... .|..|.+|.|.|....+.. .....+.|++-  +   + .|+..    .....|+....++   .|.|++++.+|
T Consensus         8 P~~l-~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   86 (111)
T d1j05a_           8 PASL-AVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADD   86 (111)
T ss_dssp             CSEE-ECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGG
T ss_pred             CCEE-EECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEccccccc
Confidence            3434 7889999999998754321 11234899873  2   2 22221    1123577776555   49999999999


Q ss_pred             CCcceEEEeecccCCeEEecccceEEEEe
Q psy5694          91 GYKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        91 ~g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      ++ .|.|.+.+.  +...--+ ..+|+|+
T Consensus        87 sa-~YyCa~~~~--~~~~FG~-GT~L~Vk  111 (111)
T d1j05a_          87 VA-TYYCQQTNE--DPYTFGG-GTKLEIK  111 (111)
T ss_dssp             CE-EEEEEECSS--SSCEECC-CEEEEC-
T ss_pred             Cc-cEEEeecCC--CccEECC-CeEEEEC
Confidence            96 999988754  2222222 4466653

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.96  E-value=2.4e-05  Score=52.31  Aligned_cols=90  Identities=20%  Similarity=0.310  Sum_probs=55.2

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCC-ceeEeEEeecc-----ee-eecc----cCCCceEEEccC---ccEEEeccCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSE-YIIVTSWIQDD-----VN-IYLN----TDTGGKYVVLSS---GDLYVFNATPND   90 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~-~v~v~sW~~d~-----~~-i~~~----~~~~~ry~vlps---G~L~I~nv~~~D   90 (129)
                      |... .+-.|++|.|.|........ -...+.|++-.     +. |...    .....||....+   -.|.|++++.+|
T Consensus         8 P~s~-s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~D   86 (111)
T d2gsia1           8 PASL-AVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEED   86 (111)
T ss_dssp             CSEE-EEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CCEE-EECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccccC
Confidence            4444 88999999999976433211 11237897732     12 2211    122457776543   349999999999


Q ss_pred             CCcceEEEeecccCCeEEecccceEEEEe
Q psy5694          91 GYKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        91 ~g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      .+ .|.|.+.+.. .. .--. ..+|+|+
T Consensus        87 sA-~YyCa~~~~~-~~-~FG~-GT~LtVk  111 (111)
T d2gsia1          87 AA-TYYCSHIREL-PR-SSGG-GTKLEIK  111 (111)
T ss_dssp             CE-EEEEEECSSS-SC-EECC-CEEEEEE
T ss_pred             Cc-eEEEEECCCC-CC-EECC-CEEEEEC
Confidence            96 9999876543 22 2222 4577775

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.95  E-value=2.6e-05  Score=51.92  Aligned_cols=89  Identities=17%  Similarity=0.303  Sum_probs=57.7

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeec--c---eeee-cc----cCCCceEEEcc---CccEEEeccCCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD--D---VNIY-LN----TDTGGKYVVLS---SGDLYVFNATPNDG   91 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d--~---~~i~-~~----~~~~~ry~vlp---sG~L~I~nv~~~D~   91 (129)
                      |... .|-.|++|.|.|.......   ..+.|.+-  +   +.|. ..    ....+||.+-.   +..|.|.+++.+|.
T Consensus         6 P~s~-~~~~G~svtl~C~~~~~~~---~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Ds   81 (108)
T d1nfde1           6 PSSA-SVTVGETVKITCSGDQLPK---NFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDE   81 (108)
T ss_dssp             CSEE-EEETTSCCCEEEEETTGGG---SCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGC
T ss_pred             CCee-EECCCCCEEEEEECCCCCC---ccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCC
Confidence            4444 7889999999998754432   24789772  2   2222 11    12245777643   34699999999999


Q ss_pred             CcceEEEeecccCCeEEecccceEEEEe
Q psy5694          92 YKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        92 g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      + .|.|.+...-+++..--. ..+|+|.
T Consensus        82 a-~YyCA~~~~~~~~~~FG~-GT~L~Vl  107 (108)
T d1nfde1          82 A-AYYCLSSYGDNNDLVFGS-GTQLTVL  107 (108)
T ss_dssp             S-EEEEEEEETTTTEEEECC-CEEEEEE
T ss_pred             c-eEEEEeecCCCCCcEECC-CeEEEEe
Confidence            7 999998754434432222 5578775

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.94  E-value=3.1e-05  Score=50.64  Aligned_cols=89  Identities=18%  Similarity=0.293  Sum_probs=53.1

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-eccc----CCCceEEE--ccC---ccEEEeccCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLNT----DTGGKYVV--LSS---GDLYVFNATPN   89 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~~----~~~~ry~v--lps---G~L~I~nv~~~   89 (129)
                      |... .+.+|.+|.|.|......   ...+.|.+-.     ..| ....    ....|+..  ..+   -.|.|.+++.+
T Consensus         6 P~~~-~~~~G~~vtl~C~~~~~~---~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   81 (110)
T d1u3ha1           6 PQSL-TVWEGETAILNCSYENSA---FDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPG   81 (110)
T ss_dssp             CSSE-EEETTSCEEEEEEECCTT---EEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTT
T ss_pred             CCEE-EEcCCCCEEEEEEecCCC---CcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCC
Confidence            3344 788999999999986543   2458998731     222 1110    01123333  222   24999999999


Q ss_pred             CCCcceEEEeecccCCeEEecccceEEEEe
Q psy5694          90 DGYKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        90 D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      |++ .|.|.+...-++...--+ ..+|+|.
T Consensus        82 Dsa-~YyCa~~~~~~~~~~FG~-GT~L~V~  109 (110)
T d1u3ha1          82 DSA-TYFCAASANSGTYQRFGT-GTKLQVV  109 (110)
T ss_dssp             SCS-EEEECCEESSSCCCCCCS-CEEEEEE
T ss_pred             Cce-eEeeeecCCCCCCCEECC-CeEEEEE
Confidence            997 999998743322211122 4577774

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.94  E-value=4.6e-05  Score=50.46  Aligned_cols=88  Identities=15%  Similarity=0.287  Sum_probs=56.2

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeec--c---eee-ecc----cCCCceEEEccCc---cEEEeccCCCC
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD--D---VNI-YLN----TDTGGKYVVLSSG---DLYVFNATPND   90 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d--~---~~i-~~~----~~~~~ry~vlpsG---~L~I~nv~~~D   90 (129)
                      .|... .+..|++|.|.|.......   ..+.|++-  +   ..| ...    .....|+....++   .|.|.+++.+|
T Consensus         7 ~P~sl-~~~~G~svtL~C~~s~~~~---~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   82 (107)
T d1tjgl1           7 SPSSL-SASVGDRITITCRASQGVT---SALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPED   82 (107)
T ss_dssp             ECSEE-EECTTCCEEEEEEESSCCT---TCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eCCEE-EECCCCCEEEEEEECCCCC---ccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCc
Confidence            35555 8899999999999865432   24678763  2   222 211    1234577766444   39999999999


Q ss_pred             CCcceEEEeecccCCeEEecccceEEEEe
Q psy5694          91 GYKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        91 ~g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      .+ .|.|.+.+.. .. .-- ...+|+|+
T Consensus        83 sA-~YyCa~~~~~-~~-~FG-~GT~LtVk  107 (107)
T d1tjgl1          83 FA-TYYCQQLHFY-PH-TFG-GGTRVDVR  107 (107)
T ss_dssp             CS-EEEEEECSBS-SC-EEC-CCEEEEEC
T ss_pred             Cc-eEEEEECcCC-cC-eEC-CCEEEEEC
Confidence            97 9999876542 22 122 24577774

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.93  E-value=2.2e-05  Score=51.99  Aligned_cols=88  Identities=20%  Similarity=0.228  Sum_probs=53.3

Q ss_pred             eEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----e-eeeccc-----CCCceEEEc--c-C--ccEEEeccCCCCCC
Q psy5694          29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----V-NIYLNT-----DTGGKYVVL--S-S--GDLYVFNATPNDGY   92 (129)
Q Consensus        29 ~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~-~i~~~~-----~~~~ry~vl--p-s--G~L~I~nv~~~D~g   92 (129)
                      +.|.+|++|.|.|........  ..+.|++-.     . .|....     ...+|+.+.  + +  ..|.|.+++.+|++
T Consensus         9 v~~~~G~~Vtl~C~~~~~~~~--~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   86 (115)
T d1fo0a_           9 ISVMEKTTVTMDCVYETQDSS--YFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSA   86 (115)
T ss_dssp             EEEETTCCEEECCEECCCCSS--CEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGCE
T ss_pred             EEEcCCCCEEEEEEEcCCCCC--CCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCccccc
Confidence            489999999999987644333  247898721     1 222110     112455553  2 2  34999999999997


Q ss_pred             cceEEEeecccCCeE--EecccceEEEEe
Q psy5694          93 KSYRCRTVNKITGES--QASVFQTRLSIT  119 (129)
Q Consensus        93 ~~Y~C~a~N~ltge~--k~S~~~~~L~V~  119 (129)
                       .|.|.+.....+..  ..-....+|+|.
T Consensus        87 -~YyCa~~~~~~~~~~~~~FG~GT~L~V~  114 (115)
T d1fo0a_          87 -VYFCAMRGDYGGSGNKLIFGTGTLLSVK  114 (115)
T ss_dssp             -EEEEEEECCCTTCSSCEEECCCEEEEEE
T ss_pred             -cccceeecCCCCCcCeeEECCCEEEEEE
Confidence             99999875432221  111114578874

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=1.6e-05  Score=52.69  Aligned_cols=75  Identities=19%  Similarity=0.157  Sum_probs=57.1

Q ss_pred             eeEEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeE
Q psy5694          28 EHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGES  107 (129)
Q Consensus        28 ~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~  107 (129)
                      .|++.+|+.++++|.+..  ++ ..++-|..++..+.+   .+..+.-.|.-=..|.+++.+|.| .|.|.|...  |+.
T Consensus        14 ~V~v~eg~~~vIPC~vT~--P~-~~VtL~~~~~~~~~p---~g~~v~~Dpk~Gf~I~~~~~~~~g-~y~C~a~~~--g~~   84 (95)
T d1fltx_          14 IIHMTEGRELVIPCRVTS--PN-ITVTLKKFPLDTLIP---DGKRIIWDSRKGFIISNATYKEIG-LLTCEATVN--GHL   84 (95)
T ss_dssp             EEEECTTSCEEECCCBSC--TT-SCCEEEETTTEEECC---CSSSEEEETTTEEEESSCCGGGCE-EEEEEEEET--TEE
T ss_pred             EEEEeCCCCEEEEccCCC--CC-ceeEEEeccCCccCC---CCCEEEECCCCCEEEeCCCcccCe-EEEEEEEEC--CEE
Confidence            348999999999999863  23 457778767755543   345566667677999999999997 999999755  887


Q ss_pred             Eecc
Q psy5694         108 QASV  111 (129)
Q Consensus       108 k~S~  111 (129)
                      ..|.
T Consensus        85 ~~S~   88 (95)
T d1fltx_          85 YKTN   88 (95)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7775

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.89  E-value=1.4e-05  Score=53.21  Aligned_cols=88  Identities=20%  Similarity=0.197  Sum_probs=54.0

Q ss_pred             eEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-eccc-----CCCceEEEc--cCc---cEEEeccCCCCCC
Q psy5694          29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLNT-----DTGGKYVVL--SSG---DLYVFNATPNDGY   92 (129)
Q Consensus        29 ~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~~-----~~~~ry~vl--psG---~L~I~nv~~~D~g   92 (129)
                      +.+.+|++|.|.|.......   ..+.|.+-.     +.| ....     ...+|+...  .++   .|.|.+++.+|.+
T Consensus        10 v~~~~G~~vtl~C~~s~~~~---~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   86 (115)
T d1j8hd1          10 VSVSEGALVLLRCNYSSSVP---PYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSDAA   86 (115)
T ss_dssp             EEEETTSCEEECCEEECSSC---CEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGGCE
T ss_pred             EEEcCCCCEEEEEEeCCCCc---eeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccCCc
Confidence            38899999999999765432   347998721     222 1111     112344442  222   4999999999997


Q ss_pred             cceEEEeecccCCeEE-ecccceEEEEec
Q psy5694          93 KSYRCRTVNKITGESQ-ASVFQTRLSITG  120 (129)
Q Consensus        93 ~~Y~C~a~N~ltge~k-~S~~~~~L~V~e  120 (129)
                       .|.|.+.+...|..+ .=....+|+|.+
T Consensus        87 -~YyCa~~~~~~~~~~~~FG~GT~L~V~p  114 (115)
T d1j8hd1          87 -EYFCAVSESPFGNEKLTFGTGTRLTIIP  114 (115)
T ss_dssp             -EEEEEEESSTTSCSCEEECCCEEEEEEC
T ss_pred             -cceeeecCCCCCCcccEECCCEEEEEEe
Confidence             999999765433211 111145888863

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=3e-05  Score=50.66  Aligned_cols=67  Identities=21%  Similarity=0.497  Sum_probs=42.9

Q ss_pred             EeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCcc-----EEEeccCCCCCCcceEEEeecc
Q psy5694          32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGD-----LYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~-----L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      ..++.+.|.|.+.++-++. ..++|++|+..+.........  ++++|+     ...-++..+|. ..|.|++.|.
T Consensus        13 ~~~~~~tL~C~~~gFyP~~-i~v~W~~dg~~~~~~~~~~~~--~~~~~~~t~~~~s~l~v~~~~~-~~ytC~V~H~   84 (94)
T d1de4a1          13 VTSSVTTLRCRALNYYPQN-ITMKWLKDKQPMDAKEFEPKD--VLPNGDGTYQGWITLAVPPGEE-QRYTCQVEHP   84 (94)
T ss_dssp             ECSSCEEEEEEEEEEBSSC-CEEEEEETTEECCGGGSCCCE--EEECTTSCEEEEEEEEECTTCG-GGEEEEEECT
T ss_pred             CCCCCEEEEEEEeeEECCC-CEEEEEECCEECccCcccccc--eEeCCCceEEEEEEEEECCCCC-CEEEEEEEeC
Confidence            4577889999999874442 458999999776432111122  233333     23445666665 4999999997

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.89  E-value=3e-05  Score=52.67  Aligned_cols=90  Identities=20%  Similarity=0.352  Sum_probs=60.4

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eeee-cc----cCCCceEEEccCc---cEEEeccCCCCCCcceE
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIY-LN----TDTGGKYVVLSSG---DLYVFNATPNDGYKSYR   96 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i~-~~----~~~~~ry~vlpsG---~L~I~nv~~~D~g~~Y~   96 (129)
                      .+-.|++|.|.|........   .+.|.+-.     ..|. ..    .....||....++   .|.|.+++.+|.+ .|.
T Consensus        12 ~~~~G~svtl~C~~s~~~~~---~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa-vYy   87 (119)
T d1f3rb2          12 SASVGDRVTLSCKGSQNINN---YLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVA-TYF   87 (119)
T ss_dssp             CCCTTCCEEEEEECSSCCBT---CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCS-EEE
T ss_pred             EECCCCCEEEEEEeCCCCcc---eeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCe-EEE
Confidence            77889999999997655443   37898732     2221 11    1224577776655   4999999999997 999


Q ss_pred             EEeecccCCeEEecccceEEEEecCCCCCCC
Q psy5694          97 CRTVNKITGESQASVFQTRLSITGKLKSLCT  127 (129)
Q Consensus        97 C~a~N~ltge~k~S~~~~~L~V~ep~~~~~~  127 (129)
                      |.+.+.  + ..--. ..+|+|+......|.
T Consensus        88 Ca~~~~--~-~~FG~-GT~LtV~~~~~~~~s  114 (119)
T d1f3rb2          88 CYQYNN--G-YTFGA-GTKLELKAAEQKLIS  114 (119)
T ss_dssp             EEEESS--S-EEECC-CCEECCSSSCCCCCC
T ss_pred             eeccCC--C-CeECC-CeEEEEeCCCcCCCC
Confidence            987642  2 22222 559999866665554

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.87  E-value=6e-05  Score=49.92  Aligned_cols=86  Identities=26%  Similarity=0.264  Sum_probs=54.7

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-eccc-------CCCceEEEc-c---CccEEEeccCCCCCC
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLNT-------DTGGKYVVL-S---SGDLYVFNATPNDGY   92 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~~-------~~~~ry~vl-p---sG~L~I~nv~~~D~g   92 (129)
                      .+-+|++|.|.|.....    ...+.|++-.     +.| ....       ...+++... +   +..|.|++++.+|.+
T Consensus        10 ~~~~G~svtl~C~~s~~----~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DSa   85 (114)
T d1ogae1          10 FRKEGQNVTLSCEQNLN----HDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTA   85 (114)
T ss_dssp             EEETTCCEEECCEECSC----CSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCE
T ss_pred             EEcCCCCEEEEEEEecC----CCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCCce
Confidence            78899999999996422    2357998732     122 1110       112344432 2   346999999999996


Q ss_pred             cceEEEeecccCCeEEecccceEEEEecC
Q psy5694          93 KSYRCRTVNKITGESQASVFQTRLSITGK  121 (129)
Q Consensus        93 ~~Y~C~a~N~ltge~k~S~~~~~L~V~ep  121 (129)
                       .|.|.+...-..+..--+ ..+|+|.+.
T Consensus        86 -~YyCa~~~~~~~~~~FG~-GT~LtV~~~  112 (114)
T d1ogae1          86 -FYLCASSSRSSYEQYFGP-GTRLTVTED  112 (114)
T ss_dssp             -EEEEEEESSTTSCCEECC-CEEEEEESC
T ss_pred             -eEEEeeccCCCCccEECC-CEEEEECCC
Confidence             999988765434433332 568999864

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.87  E-value=3.6e-05  Score=52.17  Aligned_cols=90  Identities=16%  Similarity=0.190  Sum_probs=53.8

Q ss_pred             eeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc--c------CCCceEEEc--cCcc---EEEeccCC
Q psy5694          28 EHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN--T------DTGGKYVVL--SSGD---LYVFNATP   88 (129)
Q Consensus        28 ~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~--~------~~~~ry~vl--psG~---L~I~nv~~   88 (129)
                      .|.+-+|++|.|.|.+.+.--. ...+.|.+-.     +.| .-.  .      ...+|+.+.  ++++   |.|.|++.
T Consensus        10 sv~~~~G~svtL~C~~~~~~~~-~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~~   88 (120)
T d1ypzf1          10 SISRPRDETAQISCKVFIESFR-SVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEE   88 (120)
T ss_dssp             EEEEETTSCEEEEEEECCGGGG-GCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCG
T ss_pred             EEEecCCCcEEEEEEEeccccc-CCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccccccccc
Confidence            3366689999999987543111 1347997722     222 211  0      123577653  3443   99999999


Q ss_pred             CCCCcceEEEeecccCCeEEecccceEEEEe
Q psy5694          89 NDGYKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      +|++ .|.|.+.....+....=....+|+|.
T Consensus        89 ~Dsa-~YyCA~~~~~~~~~~~FG~GT~LtV~  118 (120)
T d1ypzf1          89 EDEA-IYYCSYGEGSSGFHKVFAEGTKLIVI  118 (120)
T ss_dssp             GGCS-EEEEEECCTTTCCCCEECSCEEEEEE
T ss_pred             ccce-eEEEEEcCCCCCcccEECCCeEEEEE
Confidence            9997 99998765433321111114477776

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.83  E-value=7.9e-05  Score=49.08  Aligned_cols=90  Identities=20%  Similarity=0.363  Sum_probs=55.9

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeec--c---eee-eccc----CCCceEEEc--c---CccEEEeccCC
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD--D---VNI-YLNT----DTGGKYVVL--S---SGDLYVFNATP   88 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d--~---~~i-~~~~----~~~~ry~vl--p---sG~L~I~nv~~   88 (129)
                      .+... .+.+|.+|.|.|.......+   .+.|.+-  +   ..| ....    ...+|+...  .   +-.|.|++++.
T Consensus         6 ~p~s~-~~~~G~svtl~C~~s~~~~~---~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   81 (111)
T d1bd2d1           6 NSPSL-SVQEGRISILNCDYTNSMFD---YFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQP   81 (111)
T ss_dssp             CCSEE-EEETTSCEEEEEEECCTTCC---EEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred             cCCEE-EEcCCCCEEEEEEeCCCCCC---eEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcc
Confidence            34445 78899999999987665543   4678762  2   222 1111    112455442  2   34699999999


Q ss_pred             CCCCcceEEEeecccCCeEEecccceEEEEec
Q psy5694          89 NDGYKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      +|++ .|.|.+.... ....--+ ..+|+|.+
T Consensus        82 ~Dsa-~YyCa~~~~~-~~~~FG~-GT~LtV~p  110 (111)
T d1bd2d1          82 GDSA-VYFCAAMEGA-QKLVFGQ-GTRLTINP  110 (111)
T ss_dssp             GGCE-EEEEEEESST-TCEEECC-CEEEEEEC
T ss_pred             cccE-EEEeeccCCC-CCcEeCC-CEEEEEEc
Confidence            9996 9999887432 2322222 55888853

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=8.8e-06  Score=53.33  Aligned_cols=82  Identities=20%  Similarity=0.203  Sum_probs=50.3

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCeEEe
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQA  109 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge~k~  109 (129)
                      .|..|.+++|+|+.+-..    ......||+...........+  --...+..|.+|+.+|+| .|+|...+.-.+-...
T Consensus        14 ~V~~G~~VTL~C~~~~~~----~~f~L~keg~~~~~~~~~~~~--~~~~a~F~i~~v~~~~~G-~Y~C~y~~~~~~~S~~   86 (96)
T d1ugna1          14 VITQGSPVTLRCQGGQET----QEYRLYREKKTAPWITRIPQE--LVKKGQFPIPSITWEHTG-RYRCYYGSDTAGRSES   86 (96)
T ss_dssp             EEETTCCEEEEEECCTTC----CCEEEEESSSCCHHHHTSCHH--HHTTTEEEESSCCGGGCE-EEEEEEEETTTEECCC
T ss_pred             ccCCCCcEEEEEeCCCCC----CEEEEEECCCCcccEEEccCC--CCCEEEEEEEecCHHHCC-eEEEEEeCCCCCcccc
Confidence            578999999999975322    123556665221000000000  001347999999999997 9999987543233444


Q ss_pred             cccceEEEEe
Q psy5694         110 SVFQTRLSIT  119 (129)
Q Consensus       110 S~~~~~L~V~  119 (129)
                      |+ +..|.|+
T Consensus        87 Sd-~leL~Vt   95 (96)
T d1ugna1          87 SD-PLELVVT   95 (96)
T ss_dssp             CC-CEEEEEE
T ss_pred             CC-CEEEEEe
Confidence            65 7788886

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.81  E-value=2.5e-05  Score=51.08  Aligned_cols=65  Identities=17%  Similarity=0.311  Sum_probs=41.5

Q ss_pred             EeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc------cCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      ..|..+.|.|.+.++-++. ..++|++|+..+...      .+.++.|.+     .-..++.+++. +.|.|++.|.-
T Consensus        16 ~~~~~~tL~C~v~gf~P~~-i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~-----~s~l~v~~~~~-~~ytC~V~H~s   86 (99)
T d1lk2b_          16 ENGKPNILNCYVTQFHPPH-IEIQMLKNGKKIPKVEMSDMSFSKDWSFYI-----LAHTEFTPTET-DTYACRVKHDS   86 (99)
T ss_dssp             CTTSCEEEEEEEEEEBSSC-CEEEEEETTEECTTCEEEEEEECTTCCEEE-----EEEEEECCCSS-CCEEEEEECTT
T ss_pred             cCCCcEEEEEEEEEEECCC-cEEEEeeCCeecCCcEECceeECCCCCEEE-----EEEeEecCcCC-CEEEEEEEeCC
Confidence            3588899999998875543 458999999766311      112233322     22223456665 49999999963

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=97.81  E-value=2e-05  Score=52.90  Aligned_cols=72  Identities=24%  Similarity=0.389  Sum_probs=48.1

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eeeecccCCCceEEEc-cCc----cEEEeccCCCCCCcc
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYLNTDTGGKYVVL-SSG----DLYVFNATPNDGYKS   94 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i~~~~~~~~ry~vl-psG----~L~I~nv~~~D~g~~   94 (129)
                      |... .+-+|++|.|.|......-. ...+.|.+-.     ..+.   ..++||..- +++    .|.|+|++.+|++ .
T Consensus         6 P~s~-t~~~G~svtl~C~~s~~s~~-~~~i~WYrq~~g~~~~~~~---~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa-~   79 (112)
T d1sq2n_           6 PRSV-TKETGESLTINCVLRDASYA-LGSTCWYRKKSGEGNEESI---SKGGRYVETVNSGSKSFSLRINDLTVEDGG-T   79 (112)
T ss_dssp             CSEE-EECTTCCEEEEEEECSCSSC-CCCEEEEEEETTSCCCEEC---CCBTTEEEEEETTTTEEEEEECSCCGGGCE-E
T ss_pred             CCEE-EEcCCCCEEEEEEECCCccc-CCceEEEEeeccceeeeee---ccCCcEeeEEecCCceeeeEecCCcCccCE-E
Confidence            3444 77889999999987432211 2347998732     1221   235677653 332    5999999999997 9


Q ss_pred             eEEEeecc
Q psy5694          95 YRCRTVNK  102 (129)
Q Consensus        95 Y~C~a~N~  102 (129)
                      |.|.+...
T Consensus        80 YyCA~~~~   87 (112)
T d1sq2n_          80 YRCGLGVA   87 (112)
T ss_dssp             EEEEECBT
T ss_pred             EeEEEecC
Confidence            99987654

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=1.7e-05  Score=52.42  Aligned_cols=68  Identities=16%  Similarity=0.290  Sum_probs=43.3

Q ss_pred             EEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccE---EEeccCCCCCCcceEEEeecc
Q psy5694          31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDL---YVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        31 V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L---~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      +..|..++|.|.+.++-++. ..++|++|+..+...  .........+|..   -...+..+|. +.|+|++.|.
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~-i~v~W~~ng~~v~~~--~~~~~~~~~dgty~~~s~l~v~~~~~-~~ytC~V~H~   86 (100)
T d1k5nb_          16 AENGKSNFLNCYVSGFHPSD-IEVDLLKNGERIEKV--EHSDLSFSKDWSFYLLYYTEFTPTEK-DEYACRVNHV   86 (100)
T ss_dssp             CCTTSCEEEEEEEEEEBSSC-CEEEEEETTEECTTC--EECCCEECTTSCEEEEEEEEECCCSS-CCEEEEEECT
T ss_pred             ccCCCCEEEEEEECccCCCC-cEEEEEECCEecCCc--cccceecCCCCcEEEEEEeEECCCCC-CEEEEEEEeC
Confidence            35689999999999885553 457999999776321  0111222233332   2234556665 4999999996

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.78  E-value=8.2e-05  Score=48.55  Aligned_cols=74  Identities=18%  Similarity=0.287  Sum_probs=49.2

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eeeecc-----cCCCceEEEccC---ccEEEeccCCCC
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYLN-----TDTGGKYVVLSS---GDLYVFNATPND   90 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i~~~-----~~~~~ry~vlps---G~L~I~nv~~~D   90 (129)
                      ++... .|..|.+|.|.|.......   ..+.|.+-.     ..|...     .....|+..-.+   -.|.|.+++.+|
T Consensus         4 Qp~sl-~~~~G~svtl~C~~~~~~~---~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   79 (103)
T d8faba1           4 QPPSV-SVSPGQTARITCSANALPN---QYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAED   79 (103)
T ss_dssp             CCSEE-EECTTSCEEEEEECTTGGG---SCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGG
T ss_pred             CCCeE-EECCCCCEEEEEEeCCCCC---CCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhH
Confidence            34444 8899999999999865443   347897732     122111     122446655433   459999999999


Q ss_pred             CCcceEEEeecc
Q psy5694          91 GYKSYRCRTVNK  102 (129)
Q Consensus        91 ~g~~Y~C~a~N~  102 (129)
                      ++ .|.|.+.+.
T Consensus        80 sa-~YyCA~~~~   90 (103)
T d8faba1          80 EA-DYYCQAWDN   90 (103)
T ss_dssp             CE-EEEEEEEET
T ss_pred             Cc-eEEeeecCC
Confidence            96 999987653

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.76  E-value=8.6e-05  Score=49.43  Aligned_cols=70  Identities=19%  Similarity=0.267  Sum_probs=45.3

Q ss_pred             EEEeCCeEEEEeeCCCCC--CCceeEeEEeecc-----e-eeecc----cCCCceEEEccCc---cEEEeccCCCCCCcc
Q psy5694          30 NVILGNTAVLRCQIPSYM--SEYIIVTSWIQDD-----V-NIYLN----TDTGGKYVVLSSG---DLYVFNATPNDGYKS   94 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~--~~~v~v~sW~~d~-----~-~i~~~----~~~~~ry~vlpsG---~L~I~nv~~~D~g~~   94 (129)
                      .|.+|++|.|.|....+.  ..--..+.|.+-.     . .|+..    .....|+....++   .|.|++++.+|++ .
T Consensus        12 sv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~~DsA-v   90 (112)
T d1mjul1          12 PVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAEDVG-V   90 (112)
T ss_dssp             EECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCGGGCE-E
T ss_pred             EECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccccCCc-e
Confidence            788999999999865431  1112347997632     1 22211    1123466665444   4999999999996 9


Q ss_pred             eEEEee
Q psy5694          95 YRCRTV  100 (129)
Q Consensus        95 Y~C~a~  100 (129)
                      |.|...
T Consensus        91 YyCa~~   96 (112)
T d1mjul1          91 YYCLQH   96 (112)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            999644

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.76  E-value=1.2e-05  Score=53.48  Aligned_cols=72  Identities=19%  Similarity=0.365  Sum_probs=48.0

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc----cCCCceEEEccCc---cEEEeccCCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN----TDTGGKYVVLSSG---DLYVFNATPNDG   91 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~----~~~~~ry~vlpsG---~L~I~nv~~~D~   91 (129)
                      |... .|-.|++|.|.|........   .+.|++-.     ..| ...    ....+||....++   .|.|.+++.+|+
T Consensus         8 P~s~-~~~~G~~vtl~C~~s~~~~~---~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d3cx5k1           8 PVSL-AASLGDRVTISCRASQDINN---FLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDI   83 (107)
T ss_dssp             STTC-CBCSSSCCEEEEEESSCCTT---CEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCC
T ss_pred             CCEE-EECCCCCEEEEEEcCCCcCC---CeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCC
Confidence            3444 78899999999997655433   37897632     112 111    1223566554333   699999999999


Q ss_pred             CcceEEEeec
Q psy5694          92 YKSYRCRTVN  101 (129)
Q Consensus        92 g~~Y~C~a~N  101 (129)
                      + .|.|.+..
T Consensus        84 a-~YyCa~~~   92 (107)
T d3cx5k1          84 A-TYFCQHHI   92 (107)
T ss_dssp             S-EEEEEECS
T ss_pred             C-cEEeeeCC
Confidence            7 99998754

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.75  E-value=8.8e-05  Score=48.94  Aligned_cols=85  Identities=13%  Similarity=0.140  Sum_probs=54.5

Q ss_pred             eEEEeCCeEEEEeeCCCCCCCceeEeEEeec---c--eee-ecccC----CCceEEEc--c---CccEEEeccCCCCCCc
Q psy5694          29 HNVILGNTAVLRCQIPSYMSEYIIVTSWIQD---D--VNI-YLNTD----TGGKYVVL--S---SGDLYVFNATPNDGYK   93 (129)
Q Consensus        29 ~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d---~--~~i-~~~~~----~~~ry~vl--p---sG~L~I~nv~~~D~g~   93 (129)
                      +.+-+|.+|.|.|..+....   ..+.|++-   .  ..| .....    ..+||...  .   +-.|.|++++.+|.+ 
T Consensus        10 ~~~~~G~~vtl~C~~~~~~~---~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Dsa-   85 (110)
T d1ac6a_          10 VALSEEDFLTIHCNYSASGY---PALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSA-   85 (110)
T ss_dssp             EEEETTEEEEECEEEECSSC---CEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGCE-
T ss_pred             EEECCCCCEEEEEEecCCCC---cceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCCc-
Confidence            37889999999998765432   34899872   2  222 21111    13456542  2   345999999999996 


Q ss_pred             ceEEEeecccCCeEEecccceEEEEe
Q psy5694          94 SYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        94 ~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      .|.|.+.... .+..--. ..+|+|+
T Consensus        86 ~YyCA~~~~~-~~~~FG~-GT~L~V~  109 (110)
T d1ac6a_          86 VYYCALSGGN-NKLTFGA-GTKLTIK  109 (110)
T ss_dssp             EEEEEEEETT-TEEEECC-CEEEEEE
T ss_pred             ccceeecCCC-CCcEECC-CeEEEEE
Confidence            9999887542 3332233 5578884

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.74  E-value=0.00013  Score=48.75  Aligned_cols=69  Identities=19%  Similarity=0.277  Sum_probs=47.4

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeec--c---eee-e--cc-------cCCCceEEEc-cCc---cEEEeccCCCC
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQD--D---VNI-Y--LN-------TDTGGKYVVL-SSG---DLYVFNATPND   90 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d--~---~~i-~--~~-------~~~~~ry~vl-psG---~L~I~nv~~~D   90 (129)
                      .+.+|++|.|.|.......   ..+.|++-  +   +.| .  ..       ....+||.+. .++   .|.|.+++.+|
T Consensus        12 ~~~~G~~v~L~C~~~~~~~---~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~D   88 (118)
T d2ij0c1          12 IVKSGTSVKIECRSLDTNI---HTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHPED   88 (118)
T ss_dssp             EECTTCCEEEEEEECSSCC---SEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCGGG
T ss_pred             EEcCCCCEEEEEEEcCCcc---cEEEEEEEcccccceeeeeccccccceeccccccccceeecccccccccccccccccc
Confidence            7788999999999765432   35899873  2   222 1  11       1124678765 333   49999999999


Q ss_pred             CCcceEEEeecc
Q psy5694          91 GYKSYRCRTVNK  102 (129)
Q Consensus        91 ~g~~Y~C~a~N~  102 (129)
                      ++ .|.|.+...
T Consensus        89 sa-~YyCa~~~~   99 (118)
T d2ij0c1          89 SG-FYVCSALAG   99 (118)
T ss_dssp             CE-EEEEEEECS
T ss_pred             Cc-eEEEEEecC
Confidence            96 999998643

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.71  E-value=0.00016  Score=48.01  Aligned_cols=89  Identities=16%  Similarity=0.212  Sum_probs=55.2

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCC---CceeEeEEeecc-----eee-ec----ccCCCceEEEccC---ccEEEeccCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMS---EYIIVTSWIQDD-----VNI-YL----NTDTGGKYVVLSS---GDLYVFNATP   88 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~---~~v~v~sW~~d~-----~~i-~~----~~~~~~ry~vlps---G~L~I~nv~~   88 (129)
                      |... .+-.|++|.|.|...++..   .....+.|.+-.     +.| ..    .....+|+....+   -.|.|++++.
T Consensus         8 P~~v-~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~~   86 (113)
T d1q9ra1           8 PSSL-AVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQA   86 (113)
T ss_dssp             CSEE-EEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred             CCEE-EECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEeccccc
Confidence            4444 7889999999998654321   122458998842     222 11    1122456666543   3499999999


Q ss_pred             CCCCcceEEEeecccCCeEEecccceEEEEe
Q psy5694          89 NDGYKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      +|++ .|.|.+.+.   ...--. ..+|+|+
T Consensus        87 ~Dsa-~YyCA~~~~---~~~FG~-GT~LtV~  112 (113)
T d1q9ra1          87 EDLA-VYYCKQSYN---LRTFGG-GTKLEIK  112 (113)
T ss_dssp             GGCE-EEEEEECSS---SCEECC-CEEEEEE
T ss_pred             CCCe-EEEecccCC---CCEECC-CEEEEEe
Confidence            9997 999987542   112222 4578875

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.71  E-value=0.00022  Score=46.91  Aligned_cols=68  Identities=19%  Similarity=0.184  Sum_probs=45.5

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeec--c---eee-ecc-------cCCCceEEEc-cCc---cEEEeccCCCCCC
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQD--D---VNI-YLN-------TDTGGKYVVL-SSG---DLYVFNATPNDGY   92 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d--~---~~i-~~~-------~~~~~ry~vl-psG---~L~I~nv~~~D~g   92 (129)
                      .+-+|++|.|.|...+..    ..+.|++-  +   +.| ...       ....+|+... +++   .|.|.+++.+|.+
T Consensus        10 ~~~~G~svtl~C~~~~~~----~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   85 (113)
T d2ntsp1          10 IKTRGQQVTLSCSPISGH----RSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDSA   85 (113)
T ss_dssp             EEETTCCEEEEEECSTTC----CEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGCE
T ss_pred             EECCCCCEEEEEEECCCC----CEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcccce
Confidence            788999999999964422    35799882  2   222 110       1223455443 333   5999999999996


Q ss_pred             cceEEEeecc
Q psy5694          93 KSYRCRTVNK  102 (129)
Q Consensus        93 ~~Y~C~a~N~  102 (129)
                       .|.|.+...
T Consensus        86 -~YyCA~~~~   94 (113)
T d2ntsp1          86 -LYLCASSLA   94 (113)
T ss_dssp             -EEEEEEESS
T ss_pred             -eeeeeeeCC
Confidence             999998754

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.70  E-value=4.3e-05  Score=50.15  Aligned_cols=82  Identities=17%  Similarity=0.078  Sum_probs=48.5

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccC--CeE
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT--GES  107 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~lt--ge~  107 (129)
                      .|..|.+++|+|+.+...    ....|.||+..-...  ......-....+..|.++...|+| +|+|.....-.  .-+
T Consensus        16 ~V~~G~~VTL~C~~~~~~----~~f~L~k~g~~~~~~--~~~~~~~~~~~~f~~~~~~~~~~G-~Y~C~y~~~~~p~~wS   88 (99)
T d1nkra2          16 TVLAGENVTLSCSSRSSY----DMYHLSREGEAHERR--LPAGPKVNGTFQADFPLGPATHGG-TYRCFGSFHDSPYEWS   88 (99)
T ss_dssp             EECTTCEEEEEEEESSCC----SEEEEEETTCSSCEE--EECEEEETTEEEEEEEEEECCSCE-EEEEEEEETTEEEEEC
T ss_pred             cccCCCeEEEEECCCCCc----cEEEEEECCCccccE--EEccccCCccEEEEEeccccccCE-EEEEEeecCCCCCCcc
Confidence            578899999999976433    245788887221100  000000011124688899999997 99998765421  112


Q ss_pred             EecccceEEEEe
Q psy5694         108 QASVFQTRLSIT  119 (129)
Q Consensus       108 k~S~~~~~L~V~  119 (129)
                      ..|+ +..|.|+
T Consensus        89 ~~Sd-pLeL~VT   99 (99)
T d1nkra2          89 KSSD-PLLVSVT   99 (99)
T ss_dssp             CCCC-CEEEEEC
T ss_pred             CCCC-CEEEEEC
Confidence            2355 7777775

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.70  E-value=0.00012  Score=48.39  Aligned_cols=88  Identities=19%  Similarity=0.288  Sum_probs=52.0

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeec--c---eee-ecc--cC--CCceEEEc----cCccEEEeccCCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD--D---VNI-YLN--TD--TGGKYVVL----SSGDLYVFNATPND   90 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d--~---~~i-~~~--~~--~~~ry~vl----psG~L~I~nv~~~D   90 (129)
                      +... .+-+|++|.|.|......    ..+.|++-  +   ..| ...  ..  ...+....    .+-.|.|.+++.+|
T Consensus         8 P~~~-~v~~G~~vtl~C~~~~~~----~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   82 (113)
T d1h5ba_           8 PSAL-SLHEGTDSALRCNFTTTM----RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLED   82 (113)
T ss_dssp             CSEE-EEETTCCEEEEEEESSCC----SEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGG
T ss_pred             CCEE-EEcCCCCEEEEEEEecCC----ccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhH
Confidence            4445 888999999999976432    34799772  1   122 111  00  01111111    12259999999999


Q ss_pred             CCcceEEEeecccCC-eEEecccceEEEEe
Q psy5694          91 GYKSYRCRTVNKITG-ESQASVFQTRLSIT  119 (129)
Q Consensus        91 ~g~~Y~C~a~N~ltg-e~k~S~~~~~L~V~  119 (129)
                      .+ .|.|.+...-.+ +..--+ ..+|+|.
T Consensus        83 sa-~YyCa~~~~~~~~~~~FG~-GT~L~V~  110 (113)
T d1h5ba_          83 SG-TYFCAAEASSGSWQLIFGS-GTQLTVM  110 (113)
T ss_dssp             CE-EEEEEEECSSSSSSCEECC-CEEEEEE
T ss_pred             CE-EEEEEecCCCCCCeeEECc-CEEEEEE
Confidence            97 999998754322 212222 5588886

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.69  E-value=3.6e-05  Score=49.88  Aligned_cols=63  Identities=16%  Similarity=0.318  Sum_probs=39.7

Q ss_pred             eCCeEEEEeeCCCCCCCceeEeEEeecceeeecc-----cCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-----TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~-----~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      .++.+.|.|.+.++-++- ..++|++|+..+...     ...++.|.+.  -.|.|   .++|. ..|.|++.|.
T Consensus        14 ~~~~~~L~C~~~gF~P~~-i~v~W~~ng~~~~~~~~~~~~~~dgty~~~--S~l~v---~~~~~-~~ytC~V~H~   81 (91)
T d3frua1          14 NSGSSVLTCAAFSFYPPE-LKFRFLRNGLASGSGNCSTGPNGDGSFHAW--SLLEV---KRGDE-HHYQCQVEHE   81 (91)
T ss_dssp             STTEEEEEEEEEEEBSSC-CEEEEEETTEECCCCEEEEEECSSSCEEEE--EEEEE---ETTCG-GGEEEEEECT
T ss_pred             CCCCEEEEEEEEeEECCC-CEEEEEECCEeCCccCccceecCCCCEeEE--EEEEE---CCCCC-CEEEEEEEeC
Confidence            366889999999874443 468999999665321     0123333332  11443   44555 5999999986

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.68  E-value=0.00017  Score=48.08  Aligned_cols=90  Identities=18%  Similarity=0.286  Sum_probs=53.6

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCC--CceeEeEEeecc-----eee-ecc----cCCCceEEEccCc---cEEEeccCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMS--EYIIVTSWIQDD-----VNI-YLN----TDTGGKYVVLSSG---DLYVFNATPN   89 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~--~~v~v~sW~~d~-----~~i-~~~----~~~~~ry~vlpsG---~L~I~nv~~~   89 (129)
                      |... .|-.|++|.|.|.+....-  .....+.|.+-.     ..| ...    ....+||....+|   .|.|++++.+
T Consensus         8 P~sl-s~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~e   86 (112)
T d1ncwl1           8 PKTI-SVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAE   86 (112)
T ss_dssp             CSEE-EEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CCEE-EECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccccC
Confidence            4444 7889999999998643321  112347897742     222 111    1123567654333   3999999999


Q ss_pred             CCCcceEEEeecccCCeEEecccceEEEEe
Q psy5694          90 DGYKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        90 D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      |++ .|.|...+..  ...--. ..+|+|+
T Consensus        87 DsA-vYYC~~~~~~--~~~FG~-GTkLtVk  112 (112)
T d1ncwl1          87 DLG-VYYCWQGTHF--PYTFGG-GTKLEIK  112 (112)
T ss_dssp             GCE-EEEEEECSSS--SCEECC-CEEEEEE
T ss_pred             cCE-eEEEEcCCCc--ccEECC-CeEEEEC
Confidence            996 9999665432  111121 4477764

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.65  E-value=4.9e-05  Score=50.53  Aligned_cols=89  Identities=17%  Similarity=0.111  Sum_probs=55.6

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee-ecc-------cCCCceEEEc-c---CccEEEeccC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI-YLN-------TDTGGKYVVL-S---SGDLYVFNAT   87 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i-~~~-------~~~~~ry~vl-p---sG~L~I~nv~   87 (129)
                      |... .+-+|.+|.|.|......    ..+.|++-.     ..| ...       ....+||.+. +   +..|.|.+++
T Consensus         8 P~~~-~~~~G~~v~l~C~~~~~~----~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (113)
T d1nfdb1           8 PRHI-IKEKGGRSVLTCIPISGH----SNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALE   82 (113)
T ss_dssp             CSEE-EEETTCCCEEEEECCTTC----CEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCC
T ss_pred             CCEE-EEeCCCCEEEEEEeCCCC----CEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccC
Confidence            4444 778899999999864332    357998733     122 111       1123466542 2   3359999999


Q ss_pred             CCCCCcceEEEeecccCCeEEecccceEEEEec
Q psy5694          88 PNDGYKSYRCRTVNKITGESQASVFQTRLSITG  120 (129)
Q Consensus        88 ~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V~e  120 (129)
                      .+|.+ .|.|.+....+.+..--. ..+|+|.|
T Consensus        83 ~~Dsa-~YyCa~~~~~~~~~~FG~-GT~LtV~e  113 (113)
T d1nfdb1          83 LEDSA-MYFCASSLRWGDEQYFGP-GTRLTVLE  113 (113)
T ss_dssp             GGGCE-EECEEEESSSCSCCEECC-CEEEEEES
T ss_pred             cCCce-eEEEEeecCCCCccEECC-CeEEEEEC
Confidence            99996 999988754433322232 55788865

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.65  E-value=3e-05  Score=52.72  Aligned_cols=67  Identities=15%  Similarity=0.252  Sum_probs=50.0

Q ss_pred             eCCeEEEEeeCCCCCCCceeEeEEeecceeeecc------------cCCCceEEEccCccEEEeccCCCCCCcceEEEee
Q psy5694          33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN------------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~------------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      .++.|.|-|.+.++-++. ..++|++|+..+...            ...++.|.+.  ..|.|.--.|+|.|..|.|++.
T Consensus        19 ~~~~~tL~C~v~gf~P~~-i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~s--S~L~v~~~~W~~~g~~ytC~V~   95 (127)
T d1ogae2          19 HTQKATLVCLATGFYPDH-VELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLS--SRLRVSATFWQNPRNHFRCQVQ   95 (127)
T ss_dssp             HHSEEEEEEEEEEEBSSC-EEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEE--EEEEEEHHHHTCTTCEEEEEEE
T ss_pred             cCCcEEEEEEEEeccCCC-eEEEEEECCEEccCcEEecceeeeecccCCCCeEEEE--EEEEECHHHhCCCCCEEEEEEE
Confidence            478899999998876554 458999998666321            1235667663  6788888888887778999999


Q ss_pred             cc
Q psy5694         101 NK  102 (129)
Q Consensus       101 N~  102 (129)
                      |.
T Consensus        96 H~   97 (127)
T d1ogae2          96 FY   97 (127)
T ss_dssp             EC
T ss_pred             EC
Confidence            86

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.64  E-value=0.00015  Score=47.76  Aligned_cols=85  Identities=21%  Similarity=0.204  Sum_probs=51.1

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eeeec-c-------cCCCceEEE-cc---CccEEEeccCCCCCC
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYL-N-------TDTGGKYVV-LS---SGDLYVFNATPNDGY   92 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i~~-~-------~~~~~ry~v-lp---sG~L~I~nv~~~D~g   92 (129)
                      .+-+|++|.|.|.....   + ..+.|++-.     +.|.. .       ....+++.+ .+   ...|.|.+++.+|.+
T Consensus        11 ~~~~G~~v~l~C~~~~~---~-~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa   86 (113)
T d1j8he1          11 VKRTGEKVFLECVQDMD---H-ENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESASTNQTS   86 (113)
T ss_dssp             EEETTCCEEECEEESSC---C-SEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCGGGCE
T ss_pred             EECCCCCEEEEEEEcCC---c-cEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCccCCcc
Confidence            67789999999985322   1 347897732     22211 1       011234443 23   345999999999996


Q ss_pred             cceEEEeecccCCe-EEecccceEEEEec
Q psy5694          93 KSYRCRTVNKITGE-SQASVFQTRLSITG  120 (129)
Q Consensus        93 ~~Y~C~a~N~ltge-~k~S~~~~~L~V~e  120 (129)
                       .|.|.+...-++. ..--+ ..+|+|.|
T Consensus        87 -~YyCa~~~~~~~~~~~FG~-GT~L~V~d  113 (113)
T d1j8he1          87 -MYLCASSSTGLPYGYTFGS-GTRLTVVE  113 (113)
T ss_dssp             -EEEEEEECTTSSSCCEEBC-CEEEEEES
T ss_pred             -cEEeeEccCCCCCcCEECC-CEEEEEeC
Confidence             9999987542221 11122 45888865

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.63  E-value=0.00021  Score=47.25  Aligned_cols=68  Identities=15%  Similarity=0.269  Sum_probs=42.2

Q ss_pred             EeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEe---ccCCCCCCcceEEEeeccc
Q psy5694          32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVF---NATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~---nv~~~D~g~~Y~C~a~N~l  103 (129)
                      ..|..++|.|.+.++-++. ..++|++|+..+...  .........+|...+.   .+..+|.. .|.|++.|.-
T Consensus        16 e~~~~~tL~C~v~gF~P~~-i~V~W~~ng~~~~~~--~~~~~~~~~dgty~~~S~L~v~~~~~~-~ytC~V~H~~   86 (103)
T d1hdma1          16 EFGKPNTLVCFVSNLFPPM-LTVNWHDHSVPVEGF--GPTFVSAVDGLSFQAFSYLNFTPEPSD-IFSCIVTHEP   86 (103)
T ss_dssp             CTTSCEEEEEEEEEEBSSC-EEEEEEETTEECSSC--CCEEEEEETTTEEEEEEEEEECCCTTC-CEEEEEEETT
T ss_pred             hcCCCeEEEEEEeeEECCC-CEEEEEECCeecCCc--EeceEEeCCCCcEEEEEEEEEecCCCC-EEEEEEEeCC
Confidence            4599999999998875543 457999999665221  1111112233333321   24566654 8999999974

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.62  E-value=0.00016  Score=47.30  Aligned_cols=81  Identities=17%  Similarity=0.302  Sum_probs=50.0

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eeeecc-----cCCCceEEEccCc---cEEEeccCCCCCCcceE
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIYLN-----TDTGGKYVVLSSG---DLYVFNATPNDGYKSYR   96 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i~~~-----~~~~~ry~vlpsG---~L~I~nv~~~D~g~~Y~   96 (129)
                      .+..|.+|.|.|...... .   .+.|++-.     ..|.-.     .....++....++   .|.|.+++.+|++ .|.
T Consensus        11 ~~~~G~~vtl~C~~s~~~-~---~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa-~Yy   85 (104)
T d1yqvl1          11 SASPGEKVTMTCSASSSV-N---YMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAA-TYY   85 (104)
T ss_dssp             EECTTCCEEEEEEESSCC-S---CCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE-EEE
T ss_pred             EECCCCCEEEEEEeCCCC-C---ccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCC-eEE
Confidence            788999999999864322 2   36897732     122110     1123455554333   3999999999996 999


Q ss_pred             EEeecccCCeEEecccceEEEEe
Q psy5694          97 CRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        97 C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      |.+.+..  . .--. ..+|+|+
T Consensus        86 Ca~~~~~--~-~FG~-GT~LtVk  104 (104)
T d1yqvl1          86 CQQWGRN--P-TFGG-GTKLEIK  104 (104)
T ss_dssp             EEECSSS--C-EECC-CEEEEEC
T ss_pred             EEecCCC--C-eECC-CeEEEEC
Confidence            9875431  2 1222 4577774

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=8.7e-05  Score=47.88  Aligned_cols=64  Identities=19%  Similarity=0.360  Sum_probs=42.2

Q ss_pred             eCCeEEEEeeCCCCCCCceeEeEEeecceeeecc------cCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      .|+.+.|.|.+.++-+.. ..++|++|+..+...      ...++.|.+.     -...+.++|. ..|.|++.|.-
T Consensus        14 ~~~~~tL~C~~~gFyP~~-i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~-----s~l~~~~~~~-~~ytC~V~H~s   83 (94)
T d1t7va1          14 PGEKKKLKCLAYDFYPGK-IDVHWTRAGEVQEPELRGDVLHNGNGTYQSW-----VVVAVPPQDT-APYSCHVQHSS   83 (94)
T ss_dssp             TTSCEEEEEEEEEEBSSC-EEEEEEETTEECCCSEEEEEEETTTTEEEEE-----EEEEECTTCC-SCEEEEEEETT
T ss_pred             CCCCEEEEEEEEeEECCC-CEEEEEECCEECCCcEEeeeecCCCCeEEEE-----EEeEeCCCCC-CEEEEEEEECC
Confidence            488999999999874443 468999999665321      1223444443     2333556666 49999999973

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.61  E-value=0.0002  Score=47.07  Aligned_cols=85  Identities=24%  Similarity=0.290  Sum_probs=51.7

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeec--c---eee-eccc-------CCCceEEE-c---cCccEEEeccC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD--D---VNI-YLNT-------DTGGKYVV-L---SSGDLYVFNAT   87 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d--~---~~i-~~~~-------~~~~ry~v-l---psG~L~I~nv~   87 (129)
                      |... .+.+|++|.|.|......    ..+.|++-  +   +.| ....       ....++.. .   .+..|.|.+++
T Consensus         8 P~~~-~~~~G~~vtl~C~~s~~~----~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (110)
T d2aq2a1           8 PRNK-VAVTGEKVTLSCQQTNNH----NNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESAT   82 (110)
T ss_dssp             CSEE-EECTTCCEEEEEEESSCC----SEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCC
T ss_pred             CCeE-EEcCCCCEEEEEEECCCc----CcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCC
Confidence            4444 678899999999865322    35799882  2   122 1110       11223333 2   34569999999


Q ss_pred             CCCCCcceEEEeecccCCeEEecccceEEEE
Q psy5694          88 PNDGYKSYRCRTVNKITGESQASVFQTRLSI  118 (129)
Q Consensus        88 ~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V  118 (129)
                      .+|.+ .|.|.+.+.  +...--. ..+|+|
T Consensus        83 ~~Dsa-~YyCa~~~~--~~~~FG~-GT~L~V  109 (110)
T d2aq2a1          83 PSQTS-VYFCASGGG--GTLYFGA-GTRLSV  109 (110)
T ss_dssp             GGGCE-EEEEEEEET--TEEEECC-CEEEEE
T ss_pred             HhhCE-EEEEeeCCC--CCcEECC-CEEEEE
Confidence            99997 999988754  3332222 446665

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=0.0002  Score=47.42  Aligned_cols=73  Identities=16%  Similarity=0.104  Sum_probs=45.1

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecc-e---ee--eccc------CCCceEEE--ccCc---cEEEeccCCCCCC
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-V---NI--YLNT------DTGGKYVV--LSSG---DLYVFNATPNDGY   92 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-~---~i--~~~~------~~~~ry~v--lpsG---~L~I~nv~~~D~g   92 (129)
                      .+..|++|.|.|.......+.--...|.+.. .   .+  ..+.      ...+|+.+  .+++   .|.|.|++.+|.+
T Consensus        11 ~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   90 (118)
T d1yjdc1          11 LVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQTD   90 (118)
T ss_dssp             EECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGCE
T ss_pred             EEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccCe
Confidence            5678999999999875543222234566643 1   12  1110      11234433  3333   5999999999996


Q ss_pred             cceEEEeeccc
Q psy5694          93 KSYRCRTVNKI  103 (129)
Q Consensus        93 ~~Y~C~a~N~l  103 (129)
                       .|.|.+....
T Consensus        91 -vYyCa~~~~~  100 (118)
T d1yjdc1          91 -IYFCKIEVMY  100 (118)
T ss_dssp             -EEEEEEEEEE
T ss_pred             -EEEEEEeccc
Confidence             9999877654

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.60  E-value=7.4e-05  Score=49.40  Aligned_cols=74  Identities=14%  Similarity=0.126  Sum_probs=49.2

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeec--c---eeee-cc----cCCCceEEEccCc---cEEEeccCCCC
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD--D---VNIY-LN----TDTGGKYVVLSSG---DLYVFNATPND   90 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d--~---~~i~-~~----~~~~~ry~vlpsG---~L~I~nv~~~D   90 (129)
                      +|... .+.+|.+|.|.|........  ..+.|++-  +   ..|. ..    ....+|+.+..++   .|.|.+++.+|
T Consensus         4 qP~~~-~~~~G~svtl~C~~s~~~~~--~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D   80 (112)
T d1kgcd1           4 QPNSM-ESNEEEPVHLPCNHSTISGT--DYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRD   80 (112)
T ss_dssp             CCSEE-EEETTSCEEEEEEESCCCTT--CCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGG
T ss_pred             CCCEE-EECCCCCEEEEEEEeCCCcc--ccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeeccccc
Confidence            45555 88999999999987543322  23799883  2   2221 11    1123466665433   49999999999


Q ss_pred             CCcceEEEeec
Q psy5694          91 GYKSYRCRTVN  101 (129)
Q Consensus        91 ~g~~Y~C~a~N  101 (129)
                      ++ .|.|.+..
T Consensus        81 sa-~YyCa~~~   90 (112)
T d1kgcd1          81 AA-VYYCILPL   90 (112)
T ss_dssp             CE-EEEEECCC
T ss_pred             ce-eEeeeEec
Confidence            97 99998754

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.59  E-value=0.00011  Score=48.52  Aligned_cols=88  Identities=16%  Similarity=0.241  Sum_probs=53.6

Q ss_pred             eeeeeeEEEeCCeEEEEeeCCCCC-CCceeEeEEeecc--e---eeecc-----cCCCceEEEc--c---CccEEEeccC
Q psy5694          24 NVNYEHNVILGNTAVLRCQIPSYM-SEYIIVTSWIQDD--V---NIYLN-----TDTGGKYVVL--S---SGDLYVFNAT   87 (129)
Q Consensus        24 ~v~~~~~V~~GntAvL~C~vp~~~-~~~v~v~sW~~d~--~---~i~~~-----~~~~~ry~vl--p---sG~L~I~nv~   87 (129)
                      +|+.. .|..|.+|.|.|...+.- ..  ..+.|.+-.  .   .+...     ....+|+...  .   +..|.|++++
T Consensus         6 QP~s~-sv~~G~svtL~C~~s~~~~~~--~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~   82 (111)
T d1cd0a_           6 QPHSV-SESPGKTVTISCTRSSGNIDS--NYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLK   82 (111)
T ss_dssp             CCSEE-EECTTSCEEEEEEESSSCGGG--SCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCC
T ss_pred             cCCee-EECCCCCEEEEEEECCCCccC--ceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCC
Confidence            34444 888999999999875432 21  247897732  1   11110     1223566553  2   3469999999


Q ss_pred             CCCCCcceEEEeecccCCeEEecccceEEEE
Q psy5694          88 PNDGYKSYRCRTVNKITGESQASVFQTRLSI  118 (129)
Q Consensus        88 ~~D~g~~Y~C~a~N~ltge~k~S~~~~~L~V  118 (129)
                      .+|++ .|.|.+.+..  ...--. ..+|+|
T Consensus        83 ~~Dsa-~YyCA~~~~~--~~~FG~-GT~L~V  109 (111)
T d1cd0a_          83 TEDEA-DYYCQSYDAR--NVVFGG-GTRLTV  109 (111)
T ss_dssp             GGGCE-EEEEEEEETT--EEEEBC-CEEEEE
T ss_pred             cccCc-EEEEeeccCC--CCEECC-CeEEEE
Confidence            99996 9999876542  222222 446666

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.58  E-value=8.4e-06  Score=53.30  Aligned_cols=69  Identities=22%  Similarity=0.360  Sum_probs=47.0

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeec--ce---ee-e--cc--cCCCceEEEcc-----CccEEEeccCCCCCCcc
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQD--DV---NI-Y--LN--TDTGGKYVVLS-----SGDLYVFNATPNDGYKS   94 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d--~~---~i-~--~~--~~~~~ry~vlp-----sG~L~I~nv~~~D~g~~   94 (129)
                      .|-+|.+|.|.|.....    ...+.|.+-  +.   .| .  ..  ....+|+.+..     +-.|.|.+++.+|++ .
T Consensus         4 sV~eG~~vtL~C~~~~~----~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa-~   78 (96)
T d1ymmd1           4 SIQEGENATMNCSYKTS----INNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTA-S   78 (96)
T ss_dssp             CCSSCCCCCBCCBCSSC----EEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCS-C
T ss_pred             eECCCCCEEEEEEEeCC----cccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCE-E
Confidence            67889999999987542    246899872  21   11 1  11  12346776532     235999999999997 9


Q ss_pred             eEEEeeccc
Q psy5694          95 YRCRTVNKI  103 (129)
Q Consensus        95 Y~C~a~N~l  103 (129)
                      |.|.+....
T Consensus        79 YyCA~~~~~   87 (96)
T d1ymmd1          79 YFCATDTTS   87 (96)
T ss_dssp             CEEEEEETT
T ss_pred             EeEeEecCC
Confidence            999987653

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.50  E-value=8.8e-05  Score=48.70  Aligned_cols=64  Identities=14%  Similarity=0.361  Sum_probs=41.6

Q ss_pred             EeCCeEEEEeeCCCCCCCceeEeEEeecceeeeccc-------CCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT-------DTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~-------~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      ..|..+.|.|.+.++-++. ..++|++|+..+....       +.++-|.+.  ..|.   +..+|.. .|.|++.|.
T Consensus        17 ~~~~~~tL~C~~~gFyP~~-i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~--s~l~---v~~~~~~-~ytC~V~H~   87 (99)
T d1uvqa1          17 TLGQPNTLICLVDNIFPPV-VNITWLSNGQSVTEGVSETSFLSKSDHSFFKI--SYLT---FLPSADE-IYDCKVEHW   87 (99)
T ss_dssp             CTTSCEEEEEEEEEECSSC-CEEEEEETTEEECTTEEECCCEECTTSCEEEE--EEEE---ECCCTTC-CEEEEEECT
T ss_pred             cCCCcEEEEEEEEEEECCC-CEEEEEECCEeccCCcEecceEECCCCCEEEE--EEEE---EcCCCCC-EEEEEEEeC
Confidence            4588899999998885553 4589999997764210       123334332  1243   4455654 899999986

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.50  E-value=6.8e-05  Score=49.51  Aligned_cols=64  Identities=16%  Similarity=0.335  Sum_probs=41.4

Q ss_pred             EeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc-------cCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~-------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      ..|..++|.|.+.++-++- ..++|++|+..+...       ...++.|.+.  -.|.|   ..++. ..|+|++.|.
T Consensus        17 ~~~~~~tL~C~v~gF~P~~-i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~--S~L~v---~~~~~-~~ytC~V~H~   87 (101)
T d1fnga1          17 NLGEPNILICFIDKFSPPV-VNVTWLRNGRPVTEGVSETVFLPRDDHLFRKF--HYLTF---LPSTD-DFYDCEVDHW   87 (101)
T ss_dssp             CTTSCEEEEEEEEEEBSSC-CEEEEEETTEEECSSEEECCCEECSSSCEEEE--EEEEE---CCCTT-CCEEEEEECT
T ss_pred             cCCCCEEEEEEEEeEECCC-CEEEEEECCeecCCCcEeCeEEECCCCcEEEE--EEeEE---cCCCC-CEEEEEEEEC
Confidence            3578899999998885543 458999999776321       0123344332  23443   44454 4899999997

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.49  E-value=0.00026  Score=47.32  Aligned_cols=86  Identities=16%  Similarity=0.261  Sum_probs=54.6

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeec--ce----eeecccC-------CCceEEEcc--Ccc---EEEeccCCCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQD--DV----NIYLNTD-------TGGKYVVLS--SGD---LYVFNATPND   90 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d--~~----~i~~~~~-------~~~ry~vlp--sG~---L~I~nv~~~D   90 (129)
                      .+.+|.++.|.|...++ ...+  ...|.+-  +.    .|.....       ..+|+.+..  +..   |.|.+++.+|
T Consensus         6 ~~~eG~svtl~C~ys~~~~~~~--~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eD   83 (110)
T d1u9ka_           6 DLVEGQTLTVKCPFNIMKYANS--QKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTD   83 (110)
T ss_dssp             EECTTCCEEEEEECCHHHHTTS--EEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             cCCCCCCEEEEEEECCCCccCC--cEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCC
Confidence            78899999999998643 2332  4689873  21    2322110       136787752  222   9999999999


Q ss_pred             CCcceEEEeecccCCeEEecccceEEEEe
Q psy5694          91 GYKSYRCRTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        91 ~g~~Y~C~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      .+ .|.|...+.-.+..-.- ...+|+|+
T Consensus        84 sa-~YyCa~~~~~~~~~~~~-~~~~L~Vs  110 (110)
T d1u9ka_          84 SG-LYRCVIYHPPNDPVVLF-HPVRLVVT  110 (110)
T ss_dssp             CE-EEEEEEECTTSCCEECS-CCEEEEEC
T ss_pred             CE-EEEEEEeCCCCCCEEEE-CCEEEEEC
Confidence            97 99999866543332222 25677774

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.48  E-value=0.00033  Score=46.07  Aligned_cols=89  Identities=22%  Similarity=0.277  Sum_probs=52.3

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eee---ecc-----cCCCceEEEc-c---CccEEEeccC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNI---YLN-----TDTGGKYVVL-S---SGDLYVFNAT   87 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i---~~~-----~~~~~ry~vl-p---sG~L~I~nv~   87 (129)
                      |... .+-.|++|.|.|.....    ...+.|++-.     +.|   ...     .+..+++... .   +-.|.|.+++
T Consensus         6 P~~~-~~~~G~svtl~C~~s~~----~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   80 (112)
T d2bnub1           6 PKFQ-VLKTGQSMTLQCAQDMN----HEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAA   80 (112)
T ss_dssp             CSEE-EEETTCCEEEEEEESSC----CSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCC
T ss_pred             CCeE-EECCCCCEEEEEEEECC----ccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCC
Confidence            3434 67889999999986432    1358998732     112   111     1112334332 2   2469999999


Q ss_pred             CCCCCcceEEEeeccc-CCeEEecccceEEEEec
Q psy5694          88 PNDGYKSYRCRTVNKI-TGESQASVFQTRLSITG  120 (129)
Q Consensus        88 ~~D~g~~Y~C~a~N~l-tge~k~S~~~~~L~V~e  120 (129)
                      .+|++ .|.|.+...- ++...--. ..+|+|.|
T Consensus        81 ~~Dsa-vYyCA~~~~~~~~~~~FG~-GT~LtVle  112 (112)
T d2bnub1          81 PSQTS-VYFCASSYVGNTGELFFGE-GSRLTVLE  112 (112)
T ss_dssp             GGGCE-EEEEEEECSSTTCCCEECC-CEEEEEES
T ss_pred             HHHCE-EEEEeecCCCCCCccEECC-CEEEEEeC
Confidence            99996 9999876321 12222222 45777754

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.46  E-value=0.00016  Score=47.43  Aligned_cols=64  Identities=17%  Similarity=0.367  Sum_probs=41.8

Q ss_pred             EeCCeEEEEeeCCCCCCCceeEeEEeecceeeeccc-------CCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT-------DTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~-------~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      ..|++++|.|.+.++-++- ..++|++|+..+....       ..++-|.+.  -.|.   |.+++. ..|+|++.|.
T Consensus        15 ~~~~~~tL~C~~~gFyP~~-i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~--s~L~---v~~~~~-~~ytC~V~H~   85 (98)
T d1hdmb1          15 NTREPVMLACYVWGFYPAE-VTITWRKNGKLVMHSSAHKTAQPNGDWTYQTL--SHLA---LTPSYG-DTYTCVVEHI   85 (98)
T ss_dssp             SSSCSEEEEEEEEEEBSSC-CEEEEEETTEECCCCCSBCCCEECSSSCEEEE--EEEE---ECCCTT-CCEEEEEECT
T ss_pred             cCCCcEEEEEEEEEEECCC-CEEEEEECCEeccCCeEeCceEECCCCCEEEE--EEeE---cCCCCC-CEEEEEEEeC
Confidence            4578899999998875443 4579999997663210       123344432  2243   456665 4999999997

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.46  E-value=0.00017  Score=46.33  Aligned_cols=67  Identities=13%  Similarity=0.213  Sum_probs=39.9

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      ++++ +.+.|-|.+.++-++- ..++|.+++..+...    .-....++|.........-+.+..|.|++.|.
T Consensus        10 ~~l~-~~~tl~Cl~~gF~P~~-i~v~W~~~g~~~~~~----~~~~~~~~gtys~~s~~~~~~~~~yTC~V~H~   76 (86)
T d1hxma2          10 FVMK-NGTNVACLVKEFYPKD-IRINLVSSKKITEFD----PAIVISPSGKYNAVKLGKYEDSNSVTCSVQHD   76 (86)
T ss_dssp             EEEE-ETTEEEEEEESCBSSC-CEEEEECSSEEEECC----CEEEECTTSSEEEEEEEEETTTTTCEEEEEET
T ss_pred             EEcC-CCCEEEEEEeeEECCC-CEEEEEECCEEccCc----EEeeeccCCcEEEEEEEecCCCCEEEEEEEEC
Confidence            4443 5578999999885553 457999998665321    11222344443322222223445899999997

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.42  E-value=0.00011  Score=48.44  Aligned_cols=65  Identities=20%  Similarity=0.400  Sum_probs=42.3

Q ss_pred             EEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc-------cCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          31 VILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        31 V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~-------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      +..|..+.|.|.+.++-++. ..++|++|+..+...       .+.++.|.+.  ..|.   +..+|.. .|+|++.|.
T Consensus        14 ~~~~~~~tL~C~v~gFyP~~-i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~--s~l~---v~~~~~~-~ytC~V~H~   85 (100)
T d1muja1          14 VLLGQPNTLICFVDNIFPPV-INITWLRNSKSVADGVYETSFFVNRDYSFHKL--SYLT---FIPSDDD-IYDCKVEHW   85 (100)
T ss_dssp             CCTTSCEEEEEEEEEECSSC-CEEEEEESSSBCCSSEEECCCEECTTSCEEEE--EEEE---ECCCTTC-CEEEEEECT
T ss_pred             cccCCCEEEEEEEEeEECCC-CEEEEEeCCeeccCCceeeeeEECCCCCEEEE--EEeE---EcCCCCC-EEEEEEEEC
Confidence            35688999999998875443 458999998666321       0223344332  2233   4455654 899999997

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.00034  Score=46.79  Aligned_cols=83  Identities=22%  Similarity=0.308  Sum_probs=58.7

Q ss_pred             EeCCeEEEEeeCCCCC-CCceeEeEEeec--ceeee------cccCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          32 ILGNTAVLRCQIPSYM-SEYIIVTSWIQD--DVNIY------LNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~-~~~v~v~sW~~d--~~~i~------~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      ..|.-.-|  -||.+. .+-+..++|.+.  +..+.      +.....+.|.|+.+|.|.|.++..+|.| .|.-.+.|.
T Consensus         9 aL~~di~l--dIP~fq~~~~iddIrW~k~~~k~kiAefKk~~~~f~~~~~y~i~~nGtLkIK~L~~~d~G-tYkv~vYd~   85 (101)
T d1hnfa1           9 ALGQDINL--DIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQD-IYKVSIYDT   85 (101)
T ss_dssp             ETTSCEEE--CCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCE-EEEEEEEET
T ss_pred             cccCCccc--cCCCccccCCcceeEEEecCCCcceeeecccCCCCCCCceEEEccCCcEEeeeeeecCCC-cEEEEEEcC
Confidence            34554445  678875 567888999993  32221      0112457899999999999999999997 999999998


Q ss_pred             cCCeEEecccceEEEEe
Q psy5694         103 ITGESQASVFQTRLSIT  119 (129)
Q Consensus       103 ltge~k~S~~~~~L~V~  119 (129)
                      - |...... .-.|.|.
T Consensus        86 ~-Gk~vlek-tf~LkI~  100 (101)
T d1hnfa1          86 K-GKNVLEK-IFDLKIQ  100 (101)
T ss_dssp             T-SCEEEEE-EEEEEEE
T ss_pred             C-CcEeeee-eEEEEee
Confidence            6 6655554 3355554

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.40  E-value=0.00037  Score=45.74  Aligned_cols=86  Identities=23%  Similarity=0.193  Sum_probs=51.7

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecc-----eeee-cc-------cCCCceEEEc----cCccEEEeccCCCCCC
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDD-----VNIY-LN-------TDTGGKYVVL----SSGDLYVFNATPNDGY   92 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~-----~~i~-~~-------~~~~~ry~vl----psG~L~I~nv~~~D~g   92 (129)
                      .+-+|.+|.|.|......    ..+.|++-.     ..|. ..       ....+++...    .+..|.|.+++.+|.+
T Consensus         9 ~~~~G~svtL~C~~~~~~----~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa   84 (112)
T d2cdeb1           9 VIGTGKKITLECSQTMGH----DKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSHTS   84 (112)
T ss_dssp             EEETTCCBCCEEEETTCC----SEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTTCS
T ss_pred             EECCCCCEEEEEEEeCCc----ccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccccccc
Confidence            778899999999864322    347998732     2221 11       0112233332    2456999999999997


Q ss_pred             cceEEEeecccCCeE-EecccceEEEEec
Q psy5694          93 KSYRCRTVNKITGES-QASVFQTRLSITG  120 (129)
Q Consensus        93 ~~Y~C~a~N~ltge~-k~S~~~~~L~V~e  120 (129)
                       .|.|.+....++.. ..=....+|+|.|
T Consensus        85 -~YyCA~~~~~~~~~~~~FG~GT~LtV~d  112 (112)
T d2cdeb1          85 -QYLCASSENIGTAYEQYFGPGTRLTVTE  112 (112)
T ss_dssp             -EEEEEEECSSSSCCBCCCCCCEEEEEES
T ss_pred             -cEEEEEecCCCCcCeeEECCCeEEEEcC
Confidence             99998875543221 1111144788865

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.40  E-value=0.0008  Score=45.07  Aligned_cols=70  Identities=20%  Similarity=0.329  Sum_probs=47.5

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeec----c-eeeec-c----cCCCceEEEc--cC---ccEEEeccCCCCCCc
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQD----D-VNIYL-N----TDTGGKYVVL--SS---GDLYVFNATPNDGYK   93 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d----~-~~i~~-~----~~~~~ry~vl--ps---G~L~I~nv~~~D~g~   93 (129)
                      .|-.|.+|.|.|.+.+. ...  ..+.|++-    . +.|.- .    ....+||...  ++   -.|.|.+++.+|.+ 
T Consensus        12 ~v~~G~~vtL~C~~s~~~~~~--~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~Dsa-   88 (120)
T d1hxma1          12 PVSIGVPATLRCSMKGEAIGN--YYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDEG-   88 (120)
T ss_dssp             EEETTCCEEEEEEECSSCGGG--SEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGCE-
T ss_pred             EECCCCCEEEEEEEeccCccC--CcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccccCCc-
Confidence            78899999999998654 233  24899872    1 22321 1    1123577553  33   36999999999997 


Q ss_pred             ceEEEeecc
Q psy5694          94 SYRCRTVNK  102 (129)
Q Consensus        94 ~Y~C~a~N~  102 (129)
                      .|.|.....
T Consensus        89 ~YyCA~~~~   97 (120)
T d1hxma1          89 SYYCACDTL   97 (120)
T ss_dssp             EEEEEEECC
T ss_pred             eeecCcccC
Confidence            999987654

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.39  E-value=6.2e-05  Score=49.29  Aligned_cols=78  Identities=14%  Similarity=0.078  Sum_probs=48.3

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEE--EccC---ccEEEeccCCCCCCcceEEEeecccC
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYV--VLSS---GDLYVFNATPNDGYKSYRCRTVNKIT  104 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~--vlps---G~L~I~nv~~~D~g~~Y~C~a~N~lt  104 (129)
                      .|..|.+++|+|+.+...    ....++||+..-..     .+..  ..+.   .+..|.+|+.+|+| .|+|.......
T Consensus        12 ~V~~G~~VTl~C~~~~~~----~~f~L~keg~~~~~-----~~~~~~~~~~~~~a~F~l~~v~~~~~G-~Y~C~y~~~~~   81 (96)
T d1nkra1          12 LVKSEETVILQCWSDVMF----EHFLLHREGMFNDT-----LRLIGEHHDGVSKANFSISRMTQDLAG-TYRCYGSVTHS   81 (96)
T ss_dssp             EEETTCCEEEEEEESSCC----SEEEEEEESSSCEE-----EEEECEEETTEEEEEEEESSCCGGGCE-EEEEEEEBTTB
T ss_pred             ccCCCCcEEEEECCCCCC----CEEEEEECCCcCCc-----eeeeeeecCCceEEEEEEcccCcccCe-EEEEEEEcCCC
Confidence            688999999999976433    24577787621100     0000  0111   35999999999997 99998875431


Q ss_pred             --CeEEecccceEEEE
Q psy5694         105 --GESQASVFQTRLSI  118 (129)
Q Consensus       105 --ge~k~S~~~~~L~V  118 (129)
                        .-+.-|+ +..|.|
T Consensus        82 p~~wS~pSd-pLeL~V   96 (96)
T d1nkra1          82 PYQVSAPSD-PLDIVI   96 (96)
T ss_dssp             TTCCCCCCC-CEEEEE
T ss_pred             CCcccCCCC-CEEEEC
Confidence              1123355 666665

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.39  E-value=0.00066  Score=45.05  Aligned_cols=76  Identities=18%  Similarity=0.249  Sum_probs=48.8

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCC--ceeEeEEeecc-----eee-ecc----cCCCceEEEccCc---cEEEeccCCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSE--YIIVTSWIQDD-----VNI-YLN----TDTGGKYVVLSSG---DLYVFNATPN   89 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~--~v~v~sW~~d~-----~~i-~~~----~~~~~ry~vlpsG---~L~I~nv~~~   89 (129)
                      |... .+-+|++|.|.|........  -...+.|.+-.     ..| +..    .....||..-.+|   .|.|.+++.+
T Consensus         9 P~s~-~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~   87 (113)
T d1n4xl_           9 PLYL-PVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAE   87 (113)
T ss_dssp             CSEE-EECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCGG
T ss_pred             CCEE-EECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCcc
Confidence            3344 78899999999997543211  01347897732     222 111    1234567665444   6999999999


Q ss_pred             CCCcceEEEeecc
Q psy5694          90 DGYKSYRCRTVNK  102 (129)
Q Consensus        90 D~g~~Y~C~a~N~  102 (129)
                      |++ .|.|...+.
T Consensus        88 Dsa-vYyCa~~~~   99 (113)
T d1n4xl_          88 DLG-IYYCFQGSH   99 (113)
T ss_dssp             GCE-EEEEEECSS
T ss_pred             cCE-EEEEEECCC
Confidence            996 999976544

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.38  E-value=0.00022  Score=45.60  Aligned_cols=64  Identities=14%  Similarity=0.313  Sum_probs=41.7

Q ss_pred             EeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc-------cCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~-------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      ..++.+.|.|.+.++.++. ..++|++|+..+...       .+.++.|.+.  -.|.|.   .+|. ..|+|.+.|.
T Consensus        13 ~~~~~~~L~C~a~gFyP~~-i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~--s~l~v~---~~~~-~~ytC~V~H~   83 (89)
T d2mhaa1          13 RPEDKVTLRCWALGFYPAD-ITLTWQLNGEELIQDMELVETRPAGDGTFQKW--ASVVVP---LGKE-QYYTCHVYHQ   83 (89)
T ss_dssp             SCSSEEEEEEEEESCBSSC-CEEEEEETTEEECTTCEECCCEECSSSCEEEE--EEEEEE---SSTT-TTCEEEEECS
T ss_pred             CCCCCEEEEEEEEeEECCC-CEEEEEECCEEeCCCEEECcEecCCCCcEEEE--EEEEec---CcCC-CEEEEEEEEC
Confidence            3467899999999975553 457999999666321       1223444442  235543   4454 4899999986

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.37  E-value=0.00012  Score=47.90  Aligned_cols=64  Identities=16%  Similarity=0.400  Sum_probs=39.3

Q ss_pred             eCCeEEEEeeCCCCCCCceeEeEEeecceeeecc-------cCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~-------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      .|..++|.|.+.++.++. ..++|++|+..+...       ...++-|.+     +.+-++.+++.. .|+|++.|.-
T Consensus        17 ~~~~~tL~C~v~~F~P~~-i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~-----~s~l~~~~~~~~-~ytC~V~H~s   87 (98)
T d1d5mb1          17 LQHHNLLVCSVNGFYPGS-IEVRWFRNGQEEKTGVVSTGLIQNGDWTFQT-----LVMLETVPRSGE-VYTCQVEHPS   87 (98)
T ss_dssp             ----CEEEEEEEEEBSSC-CEEEEEETTEECCSSEEECCCEECSSSCEEE-----EEEEECCCCTTC-EEEEEEECTT
T ss_pred             cCCceEEEEEEeeeECCC-cEEEEEECCEEcCCCCEECeEEeCCCcEEEE-----EEEeeEcCCCCC-EEEEEEEECC
Confidence            467778999998875553 468999998665321       012233432     223456777764 9999999973

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=0.00012  Score=47.80  Aligned_cols=66  Identities=18%  Similarity=0.362  Sum_probs=45.0

Q ss_pred             eCCeEEEEeeCCCCCCCceeEeEEeecceeeecc-------cCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~-------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      .++.+.|.|.+.++-++. ..++|++|+..+...       .+.++.|.+.  ..|.|.--.|... ..|.|.+.|.
T Consensus        19 ~~~~~tl~C~v~~f~P~~-i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~--S~L~v~~~~w~~~-~~ytC~V~H~   91 (102)
T d1q0xl2          19 STAKATLVCTITDFYPGV-VTVDWKVDGTPVTAGMETTQPSKQSNNKYMAS--SYLTLTARAWERH-SSYSCQVTHE   91 (102)
T ss_dssp             TTTEEEEEEEEEEEBSSC-CEEEEEETTEEECTTEEECCCEECTTSCEEEE--EEEEEEHHHHTTC-CEEEEEEEET
T ss_pred             CCCeEEEEEEEeeeeCCC-CEEEEEECCEECCCCeEecccEEcCCCCEEEE--EEEEECHHHhCCC-CEEEEEEEEC
Confidence            467889999998874443 468999998655321       1234566553  4577766665554 5999999986

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.00034  Score=45.56  Aligned_cols=64  Identities=14%  Similarity=0.102  Sum_probs=39.8

Q ss_pred             EEEeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEcc------CccEEEeccCCCCCCcceEEEeeccc
Q psy5694          30 NVILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLS------SGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlp------sG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      .|..|.+++|+|+.+...    ......||+..-..     .+....+      ..+..|.+|+.+|+| .|+|......
T Consensus        14 ~v~~G~~VTL~C~~~~~~----~~f~L~k~g~~~~~-----~~~~~~~~~~~~~~a~F~l~~v~~~~~G-~Y~C~y~~~~   83 (98)
T d1ugna2          14 VVNSGGNVTLQCDSQVAF----DGFILCKEGEDEHP-----QCLNSQPHARGSSRAIFSVGPVSPSRRW-WYRCYAYDSN   83 (98)
T ss_dssp             EEETTCCEEEEEECSSCC----SEEEEEEC-----------CEEEC------CCEEEEEECCCCTTSCE-EEEEEEECTT
T ss_pred             ccCCCCcEEEEeCCCCCC----CEEEEEECCCcCCc-----EeeeeEEcCCCceEEEEEeeecccCCCe-EEEEeeEcCC
Confidence            588999999999976432    23455666622110     1111111      136999999999997 9999987553

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.32  E-value=9.3e-05  Score=48.27  Aligned_cols=67  Identities=22%  Similarity=0.438  Sum_probs=45.9

Q ss_pred             EeCCeEEEEeeCCCCCCCceeEeEEeecceeee------cccCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIY------LNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~------~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      +.+++|.|.|.+.++-++. ..++|++|+....      +..+.++.|.+.  ..|.|..-.|... ..|.|.+.|.
T Consensus        17 ~~~~~~tl~C~v~gf~P~~-i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~--S~L~v~~~~W~~~-~~ytC~V~H~   89 (102)
T d1igtb4          17 MTKKQVTLTCMVTDFMPED-IYVEWTNNGKTELNYKNTEPVLDSDGSYFMY--SKLRVEKKNWVER-NSYSCSVVHE   89 (102)
T ss_dssp             TTSSEEEEEEEEEEEBSSC-CEEEEEETTEECSSEEECCCEECTTSCEEEE--EEEEEEHHHHHTC-CCEEEEEECT
T ss_pred             hcCCcEEEEEEEEEeECCC-cEEEEEECCEEccCcEEccceeCCCCcEEEE--EEEEECHHHcCCC-CEEEEEEEeC
Confidence            3588999999998864432 4689999985431      112345667653  5677766665544 5999999986

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00015  Score=46.91  Aligned_cols=64  Identities=16%  Similarity=0.353  Sum_probs=41.0

Q ss_pred             EeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc-------cCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~-------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      ..++.+.|.|.+.++.++- ..++|++|+..+...       .+.++.|.+.  -.|.   +.+++. ..|+|++.|.
T Consensus        13 ~~~~~~~L~C~~~gFyP~~-i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~--s~l~---v~~~~~-~~ytC~V~H~   83 (95)
T d1k5na1          13 ISDHEATLRCWALGFYPAE-ITLTWQRDGEDQTQDTELVETRPAGDRTFQKW--AAVV---VPSGEE-QRYTCHVQHE   83 (95)
T ss_dssp             EETTEEEEEEEEEEEBSSC-CEEEEEETTEECGGGCEECCCEECSSSCEEEE--EEEE---EETTCG-GGEEEEEECT
T ss_pred             CCCCCEEEEEEEEeEeCCC-CEEEEEECCEEcCCCceeccEEcCCCCeEEEE--EEEE---EEcCCC-CEEEEEEEEC
Confidence            4477899999998885553 457999998665321       1123334332  1233   445554 4999999996

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.30  E-value=0.0001  Score=48.10  Aligned_cols=66  Identities=18%  Similarity=0.357  Sum_probs=44.8

Q ss_pred             eCCeEEEEeeCCCCCCCceeEeEEeecceeeec------ccCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYL------NTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~------~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      .++.|.|.|.+.++-++- ..++|++|+..+..      ..+.++.|.+.  ..|.|..-.|.. |..|.|++.|.
T Consensus        18 ~~~~~~L~C~v~~f~P~~-i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~--S~L~v~~~~w~~-~~~ytC~V~H~   89 (102)
T d1i1ca2          18 TQSQVSITCMVKGFYPPD-IYTEWKMNGQPQENYKNTPPTMDTDGSYFLY--SKLNVKKETWQQ-GNTFTCSVLHE   89 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSC-CEEEEEETTEECSSEEECCCEECTTSCEEEE--EEEEEEHHHHHT-TCCEEEEEECT
T ss_pred             cCCeEEEEEEEEEEECCC-CEEEEEECCeeccCcEEcccEeCCCCCEEEE--EEEEECHHHhCC-CCEEEEEEEeC
Confidence            467899999998774443 45899999865421      12235666553  557777665544 46999999996

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00011  Score=48.33  Aligned_cols=67  Identities=24%  Similarity=0.454  Sum_probs=45.2

Q ss_pred             EeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc--------cCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN--------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~--------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      ..++.|.|-|.+.++-++. ..++|++|+..+...        .+.++.|.+.  ..|.|.--+|.+ |..|+|.+.|.
T Consensus        17 ~~~~~vtL~Clv~~f~P~~-i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~--S~L~v~~~~W~~-g~~ytC~V~H~   91 (105)
T d1fp5a2          17 GSRDKRTLACLIQNFMPED-ISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVF--SRLEVTRAEWEQ-KDEFICRAVHE   91 (105)
T ss_dssp             SSSCCEEEEEEEEEEBSSC-CEEEEEETTEECCGGGEEECCCEECSSSCEEEE--EEEEECHHHHTT-GGGEEEEEECT
T ss_pred             hcCCcEEEEEEEEeeeCCC-cEEEEEECCEECCCceeEeeeeEecCCCCEEEE--EEEEECHHHcCC-CCEEEEEEEEC
Confidence            4577899999998864432 468999998665321        1234556553  467776666544 56999999996

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.29  E-value=0.00019  Score=46.78  Aligned_cols=65  Identities=18%  Similarity=0.460  Sum_probs=39.1

Q ss_pred             EeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc-------cCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~-------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      ..|+.++|.|.+.++-++. ..++|++|+..+...       .+.++-|.+.     ..-.+.+++. ..|+|++.|.-
T Consensus        14 ~~~~~~tL~C~~~gF~P~~-i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~-----s~l~v~~~~~-~~ytC~V~H~s   85 (97)
T d1uvqb1          14 ALNHHNLLVCSVTDFYPGQ-IKVRWFRNDQEETAGVVSTPLIRNGDWTFQIL-----VMLEMTPQRG-DVYTCHVEHPS   85 (97)
T ss_dssp             -----CEEEEEEEEEBSSC-CEEEEEETTEEECTTEEECCCEECSSSCEEEE-----EEEECCSCTT-CCEEEEEECTT
T ss_pred             cCCCCEEEEEEEeeeECCC-eEEEEEECCEEcCCCcEeceeecCCCceEEEE-----EEeccCCCCC-CEEEEEEEeCC
Confidence            3477889999998885553 458999998665321       1223444432     1234567665 59999999973

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.00034  Score=45.16  Aligned_cols=63  Identities=16%  Similarity=0.202  Sum_probs=41.3

Q ss_pred             eCCeEEEEeeCCCCCCCceeEeEEeecceeeecc------cCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      .|+.+.|.|.+.++-++  +.++|++|+..+...      ...++-|.+.  ..|.|.   ..+. ..|.|++.|.-
T Consensus        15 s~~~~~L~C~~~g~~P~--~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~--S~L~v~---~~~~-~~~tC~V~h~~   83 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPE--PHLSWLENGEELNAINTTVSQDPETELYAVS--SKLDFN---MTTN-HSFMCLIKYGH   83 (95)
T ss_dssp             STTEEEEEEEEEEESSC--EEEEEEESSCEECCSEEEEEECTTTCCEEEE--EEEEEE---TTSC-EEEEEEEEETT
T ss_pred             CCCEEEEEEEECcccCC--CEEEEecCCcEecccceeeEecCCCccEEEE--EEEEcc---CCcc-ceEEEEEEecC
Confidence            57888999999886443  479999998766321      1123445443  235543   3444 59999999873

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.27  E-value=0.00032  Score=45.72  Aligned_cols=67  Identities=18%  Similarity=0.366  Sum_probs=46.9

Q ss_pred             eCCeEEEEeeCCCC-CCCceeEeEEeecceeeec-----ccCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          33 LGNTAVLRCQIPSY-MSEYIIVTSWIQDDVNIYL-----NTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        33 ~GntAvL~C~vp~~-~~~~v~v~sW~~d~~~i~~-----~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      .++.+.|.|.+.++ |+| ...+.|.+|+..+..     ....++.|.+.  ..|.|..-+|.. |..|.|.+.|.-
T Consensus        18 ~~~~v~L~Clv~gF~P~~-~i~v~W~~~~~~~~~~~~~~~~~~~gtys~~--S~L~v~~~~W~~-~~~ytC~V~H~s   90 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSG-TMNVTWGKSGKDITTVNFPPALASGGRYTMS--NQLTLPAVECPE-GESVKCSVQHDS   90 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCC-CEEEEESCCCSSCEEEECCCEECSSSCEEEE--EEEEECGGGSCT-TCEEEEEEEETT
T ss_pred             CCCcEEEEEEEEcccCCC-cEEEEEccCCCcCceeEeeeEecCCCCEEEE--EEEEEeHHHccC-CCEEEEEEEECC
Confidence            47889999999996 565 356789998744321     12345677653  567877777755 459999999864

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=9.9e-05  Score=48.45  Aligned_cols=66  Identities=18%  Similarity=0.369  Sum_probs=44.0

Q ss_pred             eCCeEEEEeeCCCCCCCceeEeEEeecceeeecc------cCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      .+.++.|.|.+.++.++- ..++|++|+..+...      ...++.|.+  ...|.|..-+|... ..|.|.+.|.
T Consensus        20 ~~~tv~L~Cl~~~f~P~~-i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~--~S~L~v~~~~w~~~-~~ytC~V~H~   91 (104)
T d1o0va1          20 FPPTIQLLCLVSGYTPGT-IQITWLEDGQVMDVDLSTASTTQEGELAST--QSELTLSQKHWLSD-RTYTCQVTYQ   91 (104)
T ss_dssp             CCSEEEEEEEEEEECCCC-EEEEEEETTEECCGGGEEEEEEEETTEEEE--EEEEEEEHHHHHTT-CCEEEEEEET
T ss_pred             CCCeEEEEEEEEEEECCC-cEEEEEECCEEccCCceeeeEeCCCCeEEE--EEEEEECHHHcCCC-CEEEEEEEEC
Confidence            356888999998864442 468999999666321      112344444  24577776665554 5999999997

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.0012  Score=42.40  Aligned_cols=65  Identities=20%  Similarity=0.418  Sum_probs=42.2

Q ss_pred             EeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCCe
Q psy5694          32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGE  106 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltge  106 (129)
                      ..|...+|.|.+..+..+ +.-..|+|++..|...... +.+     =++.|..   +|.-|.|.|+..+...|.
T Consensus        10 ~~~sk~~LtCnLt~s~~~-i~ghrW~K~gkvl~ed~~~-~~~-----tey~V~~---~D~SGeY~CVFl~~P~~~   74 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATE-VTGHRWLKGGVVLKEDALP-GQK-----TEFKVDS---DDQWGEYSCVFLPEPMGT   74 (80)
T ss_dssp             EETTEEEEEEEEESCSSC-CCEEEEESSSEEEECTTCC-CSE-----EEEEECG---GGCCEEEEEEEESTTSCE
T ss_pred             cCCCCEEEEEECCCCCCc-eeeeEEeeCCEEccccCCC-CCc-----eEEEEec---CCCCceEEEEEcCCCcce
Confidence            458999999999776544 5678999999888543222 222     1333332   444459999987665444

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=8.5e-05  Score=48.47  Aligned_cols=66  Identities=20%  Similarity=0.393  Sum_probs=44.4

Q ss_pred             eCCeEEEEeeCCCCCCCceeEeEEeecceeeecc-------cCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~-------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      .|+.+.|-|.+.++.++. ..++|++|+..+...       .+.++.|.+.  ..|.|..-+|... ..|+|.+.|.
T Consensus        19 ~~~~~tL~C~v~~f~P~~-i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~--S~L~v~~~~w~~~-~~ytC~V~H~   91 (102)
T d1rzfl2          19 QANKATLVCLISDFYPGA-VTVAWKADSSPVKAGVETTTPSKQSNNKYAAS--SYLSLTPEQWKSH-RSYSCQVTHE   91 (102)
T ss_dssp             HTTCEEEEEEEEEEBSSC-CEEEEEETTEECCSSEEECCCEECTTSCEEEE--EEEEECHHHHHHS-SCEEEEEEET
T ss_pred             cCCcEEEEEEEEeeCCCC-eEEEEEECCEECCCCEEeCCcEECCCCEEEEE--EEEEECHHHhCCC-CEEEEEEEEC
Confidence            578899999998875543 458999998665321       1224555553  4466655555444 5899999996

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.00012  Score=47.96  Aligned_cols=67  Identities=13%  Similarity=0.267  Sum_probs=44.6

Q ss_pred             EeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc-----------cCCCceEEEccCccEEEeccCCCCCCcceEEEee
Q psy5694          32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-----------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTV  100 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~-----------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~  100 (129)
                      ..|..|.|.|.+.++-++. ..++|++|+..+...           ...++.|.+.  ..|.|.--.| |.|..|+|.+.
T Consensus        18 ~~~~~~tl~C~~~~f~P~~-i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~--S~L~v~~~~w-~~g~~ytC~V~   93 (108)
T d1ow0a2          18 ALNELVTLTCLARGFSPKD-VLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVT--SILRVAAEDW-KKGDTFSCMVG   93 (108)
T ss_dssp             TSSSEEEEEEEEEEESSSC-CEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEE--EEEEEEHHHH-HHTCCEEEEEE
T ss_pred             ccCCceEEEEEEEEeECCC-EEEEEEECCeEcCCCceEcccceecccCCCCcEEEE--EEEEEcHHHh-CCCCEEEEEEE
Confidence            3578999999998864332 468999998766321           0124455543  4566665555 34569999999


Q ss_pred             cc
Q psy5694         101 NK  102 (129)
Q Consensus       101 N~  102 (129)
                      |.
T Consensus        94 H~   95 (108)
T d1ow0a2          94 HE   95 (108)
T ss_dssp             CT
T ss_pred             eC
Confidence            86

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.22  E-value=5.6e-05  Score=49.64  Aligned_cols=67  Identities=15%  Similarity=0.260  Sum_probs=48.1

Q ss_pred             eCCeEEEEeeCCCCCCCceeEeEEeecceeeecc------cCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      .++.|.|.|.+.++-++- ..++|++|+..+...      ...++.|.+.  ..|.|..-+|++.. .|.|.+.|.-
T Consensus        19 ~~~~~~l~C~~~gf~P~~-i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~--S~l~v~~~~w~~~~-~ytC~V~H~~   91 (104)
T d1nfde2          19 RTNKATLVCLVNDFYPGS-ATVTWKANGATINDGVKTTKPSKQGQNYMTS--SYLSLTADQWKSHN-RVSCQVTHEG   91 (104)
T ss_dssp             HTTEECCCEEEEEEBSSC-CEEEEEETTEEECSSCBCCCCBCSSSCEEEE--EBCCEEHHHHHTCS-CEEEEEECTT
T ss_pred             cCCcEEEEEEEEEeeCCC-CEEEEEECCEECCCCEEeccccCCCceEEEE--EEEEEcHHHcCCCC-EEEEEEEECC
Confidence            478899999998864442 468999999766421      2235666654  66777777777765 8999999973

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.21  E-value=0.00019  Score=47.23  Aligned_cols=69  Identities=19%  Similarity=0.307  Sum_probs=44.5

Q ss_pred             EeCCeEEEEeeCCCCCCCceeEeEEeecceeeecc------cCCCceEEEccCccEEEeccCCCCCCcceEEEeecccCC
Q psy5694          32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITG  105 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~ltg  105 (129)
                      ..++++.|-|.+.++-++. ..++|++|+..+...      ...++.|.+.  ..|.|   ..+|.+..|+|.+.|.-.+
T Consensus        22 ~~~~~~~l~Clv~~f~P~~-i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~--S~L~v---~~~~w~~~ytC~V~H~s~~   95 (107)
T d1hxmb2          22 KLQKAGTYLCLLEKFFPDV-IKIHWEEKKSNTILGSQEGNTMKTNDTYMKF--SWLTV---PEKSLDKEHRCIVRHENNK   95 (107)
T ss_dssp             GSSSCEEEEEEEEEESSCC-EEEEEEESSSCCCCCCEECCCEECSSSEEEE--EEEEE---CTGGGGSCEEEEEEETTSG
T ss_pred             ccCCcEEEEEEEeEEeCCc-eEEEEEECCeEccCCEEccceecCCCeEEEE--EEEEE---ecccCCCeEEEEEEECCCC
Confidence            4578899999998875553 468999998554221      1124455442  34554   4455456899999997544


Q ss_pred             e
Q psy5694         106 E  106 (129)
Q Consensus       106 e  106 (129)
                      .
T Consensus        96 ~   96 (107)
T d1hxmb2          96 N   96 (107)
T ss_dssp             G
T ss_pred             C
Confidence            3

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00018  Score=46.75  Aligned_cols=66  Identities=15%  Similarity=0.302  Sum_probs=44.8

Q ss_pred             eCCeEEEEeeCCCCCCCceeEeEEeecceeeec------ccCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYL------NTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~------~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      .++.|.|.|.+.++-++- ..++|++|+.....      ..+.++.|.+.  ..|.|..-.|. .|..|.|++.|.
T Consensus        18 ~~~~~tL~Clv~gf~P~~-i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~--S~L~v~~~~w~-~g~~ytC~V~H~   89 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSD-IAVEWESNGQPENNYKTTPPVLDSDGSFFLY--SKLTVDKSRWQ-QGNVFSCSVMHE   89 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSC-CEEEEEETTEEECCEEECCCEECTTSCEEEE--EEEEEEHHHHH-TTCCEEEEEECT
T ss_pred             cCCceEEEEEEEEeECCC-CEEEEEECCEECCCeEEcceEECCCCCEEEE--EEEEECHHHcC-CCCEEEEEEEeC
Confidence            478899999998864432 46899999865421      11234556552  56777765554 456999999996

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00039  Score=45.19  Aligned_cols=69  Identities=20%  Similarity=0.348  Sum_probs=44.9

Q ss_pred             EeCCeEEEEeeCCCCCC-CceeEeEEeecceeeecc------cCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          32 ILGNTAVLRCQIPSYMS-EYIIVTSWIQDDVNIYLN------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~-~~v~v~sW~~d~~~i~~~------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      ..+.+|.|-|.+.++-+ +....++|.+|+..+...      .+.++.|.+.  ..|.|..-.|. .|..|.|.+.|.-
T Consensus        16 ~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gtys~~--S~L~v~~~~W~-~g~~ytC~V~H~~   91 (105)
T d1l6xa1          16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVV--SVLTVLHQDWL-NGKEYKCKVSNKA   91 (105)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEE--EEEECCHHHHH-TTCCEEEEEECTT
T ss_pred             ccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEECCcEECCCCcEEEE--EEEEEcHHHcC-CCCEEEEEEEeCC
Confidence            45789999999987643 333467999998655221      1234556553  45665555544 4459999999974

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.08  E-value=0.00035  Score=45.55  Aligned_cols=68  Identities=16%  Similarity=0.285  Sum_probs=42.4

Q ss_pred             eCCeEEEEeeCCCC-CCCceeEeEEeecceeeecc------cCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          33 LGNTAVLRCQIPSY-MSEYIIVTSWIQDDVNIYLN------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        33 ~GntAvL~C~vp~~-~~~~v~v~sW~~d~~~i~~~------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      .+.+|.|-|.+.++ |.+....++|++|+..+...      .+.++.|.+.  ..|.|.--+| +.|..|.|.+.|.-
T Consensus        15 ~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~--S~L~v~~~~W-~~g~~~tC~V~H~~   89 (103)
T d1i1ca1          15 GGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSV--SELPIVERDW-LNGKTFKCKVNSGA   89 (103)
T ss_dssp             SSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEE--EEEECCHHHH-HTTCCEEEEEECSS
T ss_pred             cCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEE--EEEEECHHHh-cCCCEEEEEEEeCC
Confidence            46789999999765 33333568999998654221      1234455442  3455444444 34568999999973

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=97.07  E-value=0.00033  Score=45.80  Aligned_cols=63  Identities=22%  Similarity=0.295  Sum_probs=39.2

Q ss_pred             CCeEEEEeeCCCCCCCceeEeEEeecceeeecc-----------cCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          34 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN-----------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        34 GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~-----------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      .+.+.|.|.+.++-+.. ..++|++|+..+...           ...++-|.+.  ..|.   +.+++. ..|.|.+.|.
T Consensus        14 ~~~vtL~C~~~gFyP~~-I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~--s~l~---v~~~~~-~~ytC~V~H~   86 (98)
T d1u58a1          14 EGGMRLRCFARDYYPAD-LEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKH--IDVY---VDGGLE-HVYSCRVKGI   86 (98)
T ss_dssp             SSCEEEEEEEEEEBSSC-EEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEE--EEEE---ECTTCG-GGEEEEEEEG
T ss_pred             CCcEEEEEEEEEEcCCC-CEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEE--EEEE---ECCCCC-CEEEEEEEeC
Confidence            45789999999985553 457999997443111           0123444432  3344   455555 5999999986


Q ss_pred             c
Q psy5694         103 I  103 (129)
Q Consensus       103 l  103 (129)
                      -
T Consensus        87 s   87 (98)
T d1u58a1          87 A   87 (98)
T ss_dssp             G
T ss_pred             C
Confidence            3

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.07  E-value=0.00037  Score=45.28  Aligned_cols=63  Identities=11%  Similarity=0.260  Sum_probs=40.6

Q ss_pred             eCCeEEEEeeCCCCCCCceeEeEEeecceeeecc------cCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      .++.+.|.|.+.++-++. ..++|++|+..+...      ...++.|.+.  -.|.|.   .+|. ..|.|++.|.
T Consensus        15 ~~~~vtL~C~a~gF~P~~-i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~--S~L~v~---~~~~-~~ytC~V~H~   83 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKP-VWVMWMRGEQEQQGTQLGDILPNANWTWYLR--ATLDVA---DGEA-AGLSCRVKHS   83 (96)
T ss_dssp             STTEEEEEEEEEEEBSSC-EEEEEEETTEECTTCEECCCEECTTSCEEEE--EEEEEE---GGGC-TTEEEEEEEG
T ss_pred             CCCeEEEEEEEEEEECCC-cEEEEEECcccCCCceeCccEeCCCCcEEEE--EEEEEe---CccC-CEEEEEEEeC
Confidence            356899999998875543 468999988655221      1224445442  235544   4555 4999999996

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00019  Score=47.13  Aligned_cols=67  Identities=18%  Similarity=0.270  Sum_probs=45.2

Q ss_pred             eCCeEEEEeeCCCCCCCceeEeEEeecceeeecc--------cCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN--------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~--------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      .++.|.|-|.+.++-++. ..++|++|+..+...        ...++.|.+.  ..|.|..-+|.. |..|.|++.|.-
T Consensus        19 ~~~~~~L~Clv~~f~P~~-i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~--S~L~v~~~~W~~-~~~ytC~V~H~~   93 (107)
T d1c5cl2          19 KSGTASVVCLLNNFYPRE-AKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS--STLTLSKADYEK-HKVYACEVTHQG   93 (107)
T ss_dssp             HTTEEEEEEEEEEEBSSC-CEEEEEETTEECCSSEEEEECCCCTTTCCEEEE--EEEEEEHHHHTT-CCEEEEEEECTT
T ss_pred             cCCceEEEEEEEEeeCCC-CEEEEEECCEECCCCEEEecccccCCCCcEEEE--EEEEECHHHhCC-CCEEEEEEEECC
Confidence            467899999998875553 458999998654211        1224556542  467776666544 459999999974

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00019  Score=46.73  Aligned_cols=70  Identities=14%  Similarity=0.240  Sum_probs=43.6

Q ss_pred             EEeCCeEEEEeeCCCC-CCCceeEeEEeecceeeec------ccCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          31 VILGNTAVLRCQIPSY-MSEYIIVTSWIQDDVNIYL------NTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        31 V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~~~i~~------~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      ...+++|.|.|.+.++ |++....+.|.+++.....      ..+.++.|.+  +..|.|.--.| +.|..|+|++.|.-
T Consensus        13 l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~--~S~L~v~~~~w-~~g~~~tC~V~H~~   89 (103)
T d1fp5a1          13 LFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTV--TSTLPVGTRDW-IEGETYQCRVTHPH   89 (103)
T ss_dssp             HHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEE--EEEEECCHHHH-HTTCCEEEEEECSS
T ss_pred             HhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEE--EEEEEEcHHHh-CCCCeEEEEEEECC
Confidence            3568899999999876 4444456789888743311      1123455544  24455443333 45569999999973

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.95  E-value=0.00036  Score=45.36  Aligned_cols=66  Identities=21%  Similarity=0.382  Sum_probs=42.9

Q ss_pred             eCCeEEEEeeCCCCCCCceeEeEEeecceeeec------ccCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYL------NTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~------~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      ..+.|.|.|.+.++-++- ..++|++|+..+..      ..+.++.|.+.  ..|.|.--+|. .|..|.|.+.|.
T Consensus        17 ~~~~~tL~C~v~~f~P~~-i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~--S~L~v~~~~w~-~~~~ytC~V~H~   88 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPED-ITVEWQWNGQPAENYKNTQPIMDTDGSYFVY--SKLNVQKSNWE-AGNTFTCSVLHE   88 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSC-CEEEEEETTEECCSEEECCCEECTTSCEEEE--EEEEEEHHHHH-TTCCEEEEEECT
T ss_pred             CCCcEEEEEEEEEeECCC-cEEEEEECCEEccCcEEeeeecCCCCcEEEE--EEEEECHHHhC-CCCEEEEEEEEC
Confidence            467899999998863332 46899999865421      11234555442  45666555543 445999999996

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.92  E-value=0.00047  Score=45.18  Aligned_cols=67  Identities=16%  Similarity=0.287  Sum_probs=44.9

Q ss_pred             eCCeEEEEeeCCCCCCCceeEeEEeecceeeecc--------cCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLN--------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~--------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      .++.+.|.|.+.++-++. ..++|++|+..+...        ...++.|.+.  ..|.|..-+|.. |..|.|.+.|.-
T Consensus        19 ~~~~~tL~Cl~~~f~P~~-i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~--S~L~v~~~~W~~-g~~ytC~V~H~~   93 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKD-INVKWKIDGSERQNGVLNSWTDQDSKDSTYSMS--STLTLTKDEYER-HNSYTCEATHKT   93 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSC-CEEEEEETTEEECTTEEEEECCCCTTTCCEEEE--EEEEEEHHHHHT-CCEEEEEEECTT
T ss_pred             cCCceEEEEEEEEeECCC-CEEEEEECCEEccCCeEeccccEecCCCCEEEE--EEEEECHHHhCC-CCEEEEEEEECC
Confidence            477899999998875443 458999998665321        1224556553  357766666543 459999999964

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=96.91  E-value=0.00064  Score=43.62  Aligned_cols=62  Identities=19%  Similarity=0.382  Sum_probs=38.5

Q ss_pred             CCeEEEEeeCCCCCCCceeEeEEeecceeeeccc--------CCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          34 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNT--------DTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        34 GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~--------~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      ++.+.|.|.+.++-++. ..++|++|+..+....        +.++.|.+.  ..|.   +..+|. ..|+|++.|.
T Consensus        15 ~~~~~L~C~~~gFyP~~-i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~--s~l~---v~~~~~-~~ytC~V~H~   84 (94)
T d1hyrc1          15 EGNITVTCRASGFYPWN-ITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTW--VATR---ICQGEE-QRFTCYMEHS   84 (94)
T ss_dssp             SSEEEEEEEEEEEBSSC-CEEEEEETTEECCSTTSEECCCEECSSSCEEEE--EEEE---EETTCG-GGEEEEEEET
T ss_pred             CCCEEEEEEEEEEECCC-cEEEEeECCeEcCCCeEEcCceEECCCCcEEEE--EEEE---EcCCCC-CEEEEEEEEC
Confidence            56689999998874443 4589999986653210        112334332  2233   444555 4899999987

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.82  E-value=0.0058  Score=39.74  Aligned_cols=73  Identities=21%  Similarity=0.330  Sum_probs=48.0

Q ss_pred             eeeeeEEEeCCeEEEEeeCCCCCCCceeEeEEeec--c---eee-ecccC--------CCceEEEc--cCccEEEeccCC
Q psy5694          25 VNYEHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD--D---VNI-YLNTD--------TGGKYVVL--SSGDLYVFNATP   88 (129)
Q Consensus        25 v~~~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d--~---~~i-~~~~~--------~~~ry~vl--psG~L~I~nv~~   88 (129)
                      |... .+-+|++|.|.|..+..-.   ..+.|.+-  +   ..| .....        ..+||...  .+..|.|..++.
T Consensus         8 P~~~-~~~~G~~vtL~C~~~~~~~---~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~~   83 (112)
T d1fo0b_           8 PRWR-LVPRGQAVNLRCILKNSQY---PWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANM   83 (112)
T ss_dssp             CSEE-ECCTTCCEEEEEEESCTTC---CEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESC
T ss_pred             CCeE-EECCCCCEEEEEEEecCCC---CcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCCc
Confidence            4444 6778999999999875433   34789774  2   122 11100        13466653  356799999999


Q ss_pred             CCCCcceEEEeecc
Q psy5694          89 NDGYKSYRCRTVNK  102 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~  102 (129)
                      +|.+ .|.|.....
T Consensus        84 ~dsa-~Y~Ca~~~~   96 (112)
T d1fo0b_          84 SQGR-TLYCTCSAD   96 (112)
T ss_dssp             CSCE-EEEEEEESS
T ss_pred             cCCc-cEEEEEecC
Confidence            9996 999996543

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.0016  Score=42.57  Aligned_cols=68  Identities=13%  Similarity=0.235  Sum_probs=41.6

Q ss_pred             eCCeEEEEeeCCCCCCCceeEeEEeecceeeec------ccCCCceEEEccCccEEEeccCCCC-CCcceEEEeeccc
Q psy5694          33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYL------NTDTGGKYVVLSSGDLYVFNATPND-GYKSYRCRTVNKI  103 (129)
Q Consensus        33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~------~~~~~~ry~vlpsG~L~I~nv~~~D-~g~~Y~C~a~N~l  103 (129)
                      ..+.+.|-|.+.++.++. ..++|.+++..+..      ....++.|.+.  ..|.|..-+|.- .+..|+|.+.|.-
T Consensus        20 ~~~~~~l~Cl~~gF~P~~-i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~--S~L~v~~~eW~~~~~~~ytC~V~H~~   94 (105)
T d1dn0b2          20 DTSSVAVGCLAQDFLPDS-ITFSWKYKNNSDISSTRGFPSVLRGGKYAAT--SQVLLPSKDVMAGTDEHVVCKVQHPN   94 (105)
T ss_dssp             -CCSEEEEEEEEEEBSSC-CEEEEEETTSCEECCEEECCCEEETTEEEEE--EEEEECTTCC---CCCEEEEEEECTT
T ss_pred             CCCceEEEEEEecccCCc-EEEEEEECCccccCCEEcceEEccCCCEEEE--EEEEEcHHHhccCCCCEEEEEEEECC
Confidence            357789999998875554 45799998854421      11124445432  356665555532 2237999999984

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.80  E-value=0.0015  Score=42.35  Aligned_cols=66  Identities=17%  Similarity=0.282  Sum_probs=43.9

Q ss_pred             eCCeEEEEeeCCCCCCCceeEeEEeecceee----ecccCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI----YLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i----~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      .++.+.|-|.+.++-++- ..++|.+++...    .+....++.|...  ..|.|..-.| +.+ .|.|.+.|.-
T Consensus        19 ~~~~~tl~Cl~~gf~P~~-i~v~W~~~~~~~~~~~~~~~~~~g~~s~~--S~L~v~~~~w-~~~-~ytC~V~H~~   88 (101)
T d1kcvh2          19 AASAVTLGCLVKGYFPEP-VTVAWNEGALSSGVLTVSAVLQSGLYTLS--SNTTVASGTW-PSA-SVTCLVAHPK   88 (101)
T ss_dssp             TCSEEEEEEEEEEEBSSC-CEEEEGGGTCCTTEEECCCEEETTEEEEE--EEEEEETTTT-TTS-CCEEEEEEGG
T ss_pred             CCCeEEEEEEEEEEeCCC-CEEEEecCCCcccceeeeeecCCCCEEEE--EEEEEchhhc-CCC-eEEEEEEeCC
Confidence            578999999998864442 468998887332    1112235566543  4677766666 344 8999999974

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.71  E-value=0.0026  Score=43.37  Aligned_cols=70  Identities=14%  Similarity=0.327  Sum_probs=48.3

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e------eeecc-------cCCCceEEEcc--Cc---cEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V------NIYLN-------TDTGGKYVVLS--SG---DLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~------~i~~~-------~~~~~ry~vlp--sG---~L~I~nv~~   88 (129)
                      .+..|+++.|.|.+.++ ..+|  -++|++-.  .      .|.+.       ....+|+.+..  +.   -|.|++++.
T Consensus        11 ~~kPg~sv~LsC~~SG~s~~~y--~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~   88 (117)
T d1iqdb1          11 VKKPGASVKVSCKVSGYTLTEL--PVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRS   88 (117)
T ss_dssp             EECTTCCEEEEEEEESSCGGGS--CEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCEEEEEEEcCCCCCCC--CEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCc
Confidence            56779999999999775 4443  36887732  1      12222       11357888763  22   399999999


Q ss_pred             CCCCcceEEEeecc
Q psy5694          89 NDGYKSYRCRTVNK  102 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~  102 (129)
                      ||.. .|.|...+.
T Consensus        89 eDtA-vYYCA~~~~  101 (117)
T d1iqdb1          89 DDTA-VYYCAVPDP  101 (117)
T ss_dssp             GGCE-EEEEEECSS
T ss_pred             Ccce-EEEEeEcCC
Confidence            9995 999987654

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.57  E-value=0.0068  Score=40.10  Aligned_cols=70  Identities=21%  Similarity=0.317  Sum_probs=47.2

Q ss_pred             EeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCC-CCCCcceEEEeecccCCeEEec
Q psy5694          32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATP-NDGYKSYRCRTVNKITGESQAS  110 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~-~D~g~~Y~C~a~N~ltge~k~S  110 (129)
                      |.|.+++|.|-..+.     ..+.|.+++..|..   ..+++++       ..+-+. +|.| -|.|-..+.  ++   +
T Consensus        12 ISGTtV~LTCP~~~~-----~~I~Wkkn~~~i~g---~~~~~L~-------L~~FSE~e~SG-yY~C~~~~~--~~---~   70 (100)
T d1jbja2          12 ISGTSVELTCPLDSD-----ENLKWEKNGQELPQ---KHDKHLV-------LQDFSEVEDSG-YYVCYTPAS--NK---N   70 (100)
T ss_dssp             EETTEEEEECSSCCC-----TTCEEEETTEEECS---CCCSEEE-------EESCCTTTSCE-EEEEECSSC--CC---C
T ss_pred             EeCCEEEEECCCCCC-----CceEEeeccccCCC---CCCcEEE-------EccccccccCc-ceEEecCCC--Cc---c
Confidence            569999999986532     24899999988742   2345544       445555 6886 999965543  22   2


Q ss_pred             ccceEEEEecCCCCC
Q psy5694         111 VFQTRLSITGKLKSL  125 (129)
Q Consensus       111 ~~~~~L~V~ep~~~~  125 (129)
                         ..|.++..++++
T Consensus        71 ---~~LYLKARV~~~   82 (100)
T d1jbja2          71 ---TYLYLKARVGSA   82 (100)
T ss_dssp             ---CCEEECCCCCSC
T ss_pred             ---eEEEEEEEEccc
Confidence               378888777665

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=96.55  E-value=0.0013  Score=43.92  Aligned_cols=69  Identities=16%  Similarity=0.308  Sum_probs=43.3

Q ss_pred             EeCCeEEEEeeCCCCCCC-ceeEeEEeecceeeecc------cCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          32 ILGNTAVLRCQIPSYMSE-YIIVTSWIQDDVNIYLN------TDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~~-~v~v~sW~~d~~~i~~~------~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      ..+.+|.|-|.+.++.++ ....++|.+|+..+...      ...++.|.+.  ..|.|.--+| +.|..|.|.+.|.-
T Consensus        30 ~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~--S~L~v~~~eW-~~g~~ytC~V~H~~  105 (119)
T d1igtb3          30 MISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVV--SALPIQHQDW-MSGKEFKCKVNNKD  105 (119)
T ss_dssp             CTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEE--EEEECCHHHH-HTTCEEEEEEECTT
T ss_pred             ccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEE--EEEEEeHHHh-CCCCeEEEEEEECC
Confidence            357899999999776333 33468999998655321      1123445442  3455444444 35568999999974

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.52  E-value=0.0016  Score=42.30  Aligned_cols=66  Identities=17%  Similarity=0.337  Sum_probs=41.8

Q ss_pred             eCCeEEEEeeCCCCCCCceeEeEEeecceee----ecccCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI----YLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i----~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      .|+.+.|.|.+.++-++. ..++|.+++...    .+....++.|.+.  ..|.|..-+| +.+ .|+|.+.|.-
T Consensus        19 ~~~~~~l~Cl~~gf~P~~-i~v~W~~~~~~~~~~~~~~~~~~g~ys~~--S~L~v~~~~w-~~~-~ytC~V~H~~   88 (102)
T d1mjuh2          19 SGSSVTLGCLVKGYFPEP-VTLTWNSGSLSSGVHTFPAVLQSDLYTLS--SSVTVTSSTW-PSQ-SITCNVAHPA   88 (102)
T ss_dssp             ---CEEEEEEEEEEBSSC-CEEEEGGGTBCTTEEECCCEEETTEEEEE--EEEEECTTTT-TTS-CCEEEEEEGG
T ss_pred             CCCcEEEEEEEeeeeCCC-eEEEECcCCccCCeEecccccCCCCEEEE--EEEEEehhHc-CCc-eEEEEEEECC
Confidence            578899999998875553 358998776221    1122335666553  4577766666 344 8999999974

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.37  E-value=0.00033  Score=46.38  Aligned_cols=67  Identities=19%  Similarity=0.341  Sum_probs=42.6

Q ss_pred             EeCCeEEEEeeCCCCCCCceeEeEEeecce----eeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDV----NIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~----~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      +.++.|.|.|.+.++-++. ..++|.+++.    ...+..+.++.|.+.  ..|.|..-.| +.|..|.|.+.|.
T Consensus        25 ~~~~~~tL~C~v~gf~P~~-i~v~W~~~~~~~~~~~~~~~~~dgtys~~--S~L~v~~~~W-~~~~~ytC~V~H~   95 (111)
T d1pfca_          25 LSKKKVSLTCMITGFYPAD-INVEWDSSEPSDYKNTPPVFDTDGSFFLY--SRLKVDTDAW-NNGESFTCSVMHE   95 (111)
T ss_dssp             CCTTSCCEEEEEESCCSSC-CEEESSSCCTTTEEEEEEECCSSCCCEEE--EEECCCSSCC-HHHHCCEEEEEET
T ss_pred             hcCCceEEEEEEEeeECCC-cEEEEeeCCCCCcEEcccEECCCCcEEEE--EEEEECHHHh-CCCCEEEEEEEeC
Confidence            3577899999998875553 4579998762    112223345666653  3455443333 2356899999996

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.35  E-value=0.01  Score=40.57  Aligned_cols=70  Identities=20%  Similarity=0.361  Sum_probs=47.8

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e------eeeccc-------CCCceEEEcc--C---ccEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V------NIYLNT-------DTGGKYVVLS--S---GDLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~------~i~~~~-------~~~~ry~vlp--s---G~L~I~nv~~   88 (129)
                      .|..|+++.|.|.+.++ ..+|  -++|++-.  .      .|.+..       ...+|+.+..  +   .-|+|+|++.
T Consensus        11 lvkPG~sl~LsC~~SG~s~~~y--~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~   88 (123)
T d1mqkh_          11 LVQPGGSLKLSCAASGFTFSSY--TMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKS   88 (123)
T ss_dssp             EECTTCCEEEEEEEESSCGGGS--CEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             eECCCCCEEEEEEECcccCcCC--ceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeecc
Confidence            56789999999999765 4444  36887732  1      233321       1246888853  1   2399999999


Q ss_pred             CCCCcceEEEeecc
Q psy5694          89 NDGYKSYRCRTVNK  102 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~  102 (129)
                      ||.. .|.|.....
T Consensus        89 eDtA-vYYCAr~~~  101 (123)
T d1mqkh_          89 EDTA-MYYCVRHEY  101 (123)
T ss_dssp             GGCE-EEEEEEEET
T ss_pred             Cccc-ceeEEecCC
Confidence            9995 999976543

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.22  E-value=0.0038  Score=42.48  Aligned_cols=70  Identities=21%  Similarity=0.328  Sum_probs=45.1

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e---ee---eccc------CCCceEEEcc--C---ccEEEeccCCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V---NI---YLNT------DTGGKYVVLS--S---GDLYVFNATPN   89 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~---~i---~~~~------~~~~ry~vlp--s---G~L~I~nv~~~   89 (129)
                      .|..|.++.|.|.+.++ ..+...-+.|++-.  .   -|   ....      ...+||.+..  +   -.|.|.+++.|
T Consensus        11 ~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~e   90 (120)
T d2agjh1          11 LVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPV   90 (120)
T ss_dssp             BCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCGG
T ss_pred             eECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeeec
Confidence            56679999999997543 22222347898631  1   12   1110      1247888752  3   23999999999


Q ss_pred             CCCcceEEEee
Q psy5694          90 DGYKSYRCRTV  100 (129)
Q Consensus        90 D~g~~Y~C~a~  100 (129)
                      |.. .|.|...
T Consensus        91 DsA-vYyCAr~  100 (120)
T d2agjh1          91 DTA-TYYCART  100 (120)
T ss_dssp             GCE-EEEEEEE
T ss_pred             cce-EEeeEec
Confidence            995 9999744

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.0003  Score=45.68  Aligned_cols=69  Identities=19%  Similarity=0.255  Sum_probs=40.6

Q ss_pred             EEeCCeEEEEeeCCCC-CCCceeEeEEeecceee----ecccCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          31 VILGNTAVLRCQIPSY-MSEYIIVTSWIQDDVNI----YLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        31 V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~~~i----~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      +..|++|.|.|.+.++ .++ ...++|.+++...    .+....++.|.+.  ..|.|.--.| +.|..|.|.+.|.-
T Consensus        15 ~~~~~~~tL~C~v~~f~~p~-~i~v~W~~~~~~~~~~~~~~~~~~gt~s~~--S~L~v~~~~W-~~g~~ftC~V~H~~   88 (101)
T d1ow0a1          15 LLLGSEANLTCTLTGLRDAS-GVTFTWTPSSGKSAVQGPPERDLCGCYSVS--SVLPGCAEPW-NHGKTFTCTAAYPE   88 (101)
T ss_dssp             HHHCSSCCCEEEETTCCSCC-CCCCCBSSCSSCCCEECCCCCCSTTCCCEE--EECTTTHHHH-HHTCEEEEEECCSS
T ss_pred             HccCCCeEEEEEEeCCCCCc-ceEEEEEECCceeeeecceEECCCCCEEEE--EEEEEcHHHc-CCCCeEEEEEEeCC
Confidence            3568999999999886 333 2458999877321    1112233444331  2233322222 34569999999974

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.06  E-value=0.018  Score=38.04  Aligned_cols=66  Identities=20%  Similarity=0.371  Sum_probs=41.5

Q ss_pred             CCeEEEEeeCCCC-CCCceeEeEEeecc--e------eeecc-------cCCCceEEEccC-----ccEEEeccCCCCCC
Q psy5694          34 GNTAVLRCQIPSY-MSEYIIVTSWIQDD--V------NIYLN-------TDTGGKYVVLSS-----GDLYVFNATPNDGY   92 (129)
Q Consensus        34 GntAvL~C~vp~~-~~~~v~v~sW~~d~--~------~i~~~-------~~~~~ry~vlps-----G~L~I~nv~~~D~g   92 (129)
                      |+++.|.|.+.++ ..+|  -++|++-.  +      .|.+.       ....+|+.+..+     --|+|++++.||..
T Consensus         2 G~sl~LsC~~SG~s~~~y--~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTA   79 (103)
T d1oari_           2 GASVKLSCKASGYTFTSY--WMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSA   79 (103)
T ss_dssp             CCCEEEEEECCSSCSTTS--EEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCS
T ss_pred             CCCeEEEEEEECCChhcC--ceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccE
Confidence            8999999999875 4443  47897632  1      12221       123478887632     24999999999996


Q ss_pred             cceEEEeecc
Q psy5694          93 KSYRCRTVNK  102 (129)
Q Consensus        93 ~~Y~C~a~N~  102 (129)
                       .|.|.....
T Consensus        80 -vYYCAr~~~   88 (103)
T d1oari_          80 -VYYCARMWY   88 (103)
T ss_dssp             -EEEEEEEEC
T ss_pred             -EEEeEEECC
Confidence             999986543

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0087  Score=38.43  Aligned_cols=66  Identities=24%  Similarity=0.451  Sum_probs=42.9

Q ss_pred             eCCeEEEEeeCCCCCCCceeEeEEeecceee----e-cccCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNI----Y-LNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i----~-~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      .++++.|.|.+.++-++. ..++|.+++..-    . +..+.++.|.+  +-.|.|..-.|. . ..|.|++.|.-
T Consensus        19 ~~~~~tl~Cl~~~f~P~~-i~v~W~~~~~~~~~~t~~~~~~~~gtys~--~S~L~v~~~~w~-~-~~ytC~V~H~~   89 (103)
T d1c5ch2          19 SGGTAALGCLVKDYFPEP-VTVSWNSGALTSGVHTFPAVLQSSGLYSL--SSVVTVPSSSLG-T-QTYICNVNHKP   89 (103)
T ss_dssp             ETTEEEEEEEEEEEBSSC-CEEEEGGGTBCTTEEECCCEECTTSCEEE--EEEEEEEGGGGG-T-CCCEEEEEEGG
T ss_pred             CCCeEEEEEEEEeEeCCC-eEEEECcCCCCCCEEECCCeECCCCCEEE--EEEEEECccccC-C-CeEEEEEEeCC
Confidence            578899999998875553 457998876321    1 11123455654  245777665553 3 48999999974

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.94  E-value=0.0098  Score=40.31  Aligned_cols=68  Identities=25%  Similarity=0.456  Sum_probs=46.7

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e------eeeccc-------CCCceEEEcc--Cc---cEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V------NIYLNT-------DTGGKYVVLS--SG---DLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~------~i~~~~-------~~~~ry~vlp--sG---~L~I~nv~~   88 (129)
                      .|..|+++.|.|.+.++ ..+|  -++|++-.  +      .|.+..       ...+|+.+-.  +.   -|+|.+++.
T Consensus        10 ~~kPG~sl~LsC~~SG~~~~~y--~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~   87 (117)
T d1um5h1          10 LVKPGGSVKMSCKASEYTLTSY--LFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTS   87 (117)
T ss_dssp             EECTTCCEEEEEEESSCCCSCC--EEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCEEEEEEEccccCCCC--cCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCC
Confidence            67789999999999875 4443  47897732  1      233321       1246887742  22   399999999


Q ss_pred             CCCCcceEEEee
Q psy5694          89 NDGYKSYRCRTV  100 (129)
Q Consensus        89 ~D~g~~Y~C~a~  100 (129)
                      ||.. .|.|...
T Consensus        88 eDtA-vYYCAr~   98 (117)
T d1um5h1          88 EDSA-VYYCARS   98 (117)
T ss_dssp             GGCE-EEEEEEE
T ss_pred             Ccce-EEEEeec
Confidence            9995 9999654

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.93  E-value=0.01  Score=40.55  Aligned_cols=69  Identities=17%  Similarity=0.319  Sum_probs=47.9

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc-----e---eeeccc-------CCCceEEEccC-----ccEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD-----V---NIYLNT-------DTGGKYVVLSS-----GDLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~-----~---~i~~~~-------~~~~ry~vlps-----G~L~I~nv~~   88 (129)
                      .|..|+++.|.|.+.++ ..+|  -++|++-.     .   .|.+..       ...+|+.+..+     --|+|.+++.
T Consensus        12 ~vkpg~sl~LsC~~SG~~~~~y--~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~~   89 (122)
T d1vgeh1          12 VKKPGASVKVSCKASGYSFTSY--GLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRP   89 (122)
T ss_dssp             EECTTCCEEEEEEECSSCGGGS--EEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             EECCCCCEEEEEEEcCCCccCC--CceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccCC
Confidence            67889999999999876 4444  47898732     1   233321       12478877532     2399999999


Q ss_pred             CCCCcceEEEeec
Q psy5694          89 NDGYKSYRCRTVN  101 (129)
Q Consensus        89 ~D~g~~Y~C~a~N  101 (129)
                      ||.. .|.|....
T Consensus        90 eDtA-~YYCAr~~  101 (122)
T d1vgeh1          90 EDTA-VYYCARDP  101 (122)
T ss_dssp             GGCE-EEEEEEET
T ss_pred             Ccce-EEEEeecC
Confidence            9995 99997653

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=95.90  E-value=0.0076  Score=41.21  Aligned_cols=70  Identities=20%  Similarity=0.307  Sum_probs=46.1

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc-----ee---eecccC------CCceEEEcc--C---ccEEEeccCCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD-----VN---IYLNTD------TGGKYVVLS--S---GDLYVFNATPN   89 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~-----~~---i~~~~~------~~~ry~vlp--s---G~L~I~nv~~~   89 (129)
                      .|..|+++.|.|.+.++ ..+.---+.|.+-.     +-   |.....      ..+|+.+.-  +   -.|+|++++.|
T Consensus        11 lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~e   90 (126)
T d1etzb1          11 ILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDTS   90 (126)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceeccccc
Confidence            56679999999998754 33322346897531     11   222211      246888753  2   34999999999


Q ss_pred             CCCcceEEEee
Q psy5694          90 DGYKSYRCRTV  100 (129)
Q Consensus        90 D~g~~Y~C~a~  100 (129)
                      |.. .|.|...
T Consensus        91 DtA-vYyCAr~  100 (126)
T d1etzb1          91 DTA-TYHCARR  100 (126)
T ss_dssp             GCE-EEEEEEE
T ss_pred             ccc-eEEEEEe
Confidence            995 9999854

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.83  E-value=0.0092  Score=40.49  Aligned_cols=68  Identities=22%  Similarity=0.400  Sum_probs=46.8

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e------eeeccc-------CCCceEEEccC-----ccEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V------NIYLNT-------DTGGKYVVLSS-----GDLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~------~i~~~~-------~~~~ry~vlps-----G~L~I~nv~~   88 (129)
                      .+..|.+..|.|.+.++ ..+|  -++|++--  .      .|.+..       ...+|+.+..+     --|+|+|++.
T Consensus        11 ~~kpg~sl~lsC~~SG~~~~~y--~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~   88 (117)
T d1jnhb1          11 LARPGASVKLSCRTSGYSFTTY--WMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTS   88 (117)
T ss_dssp             ECCTTCCEEEEEEEESSCSSSS--EEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCEEEEEEEcCCCCCCC--ceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCC
Confidence            56779999999999875 4444  47887721  1      133221       12468888532     3499999999


Q ss_pred             CCCCcceEEEee
Q psy5694          89 NDGYKSYRCRTV  100 (129)
Q Consensus        89 ~D~g~~Y~C~a~  100 (129)
                      ||.. .|.|...
T Consensus        89 eDTA-vYYCAr~   99 (117)
T d1jnhb1          89 EDSA-VYSCSRG   99 (117)
T ss_dssp             GGCE-EEEEEEE
T ss_pred             Ccce-EEEEeec
Confidence            9995 9999653

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.78  E-value=0.0073  Score=41.68  Aligned_cols=71  Identities=20%  Similarity=0.382  Sum_probs=47.3

Q ss_pred             EEEeCCeEEEEeeCCCCC-CCceeEeEEeecc-----eee---eccc------CCCceEEEcc--Ccc---EEEeccCCC
Q psy5694          30 NVILGNTAVLRCQIPSYM-SEYIIVTSWIQDD-----VNI---YLNT------DTGGKYVVLS--SGD---LYVFNATPN   89 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~-~~~v~v~sW~~d~-----~~i---~~~~------~~~~ry~vlp--sG~---L~I~nv~~~   89 (129)
                      .|-.|+++.|.|.+.++. .++..-+.|++-.     +.|   ....      ...+|+.+..  +.+   |+|++++.|
T Consensus        11 ~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~e   90 (132)
T d1tjgh1          11 LVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSPV   90 (132)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCcc
Confidence            567899999999987653 4433457897632     112   2111      1246887753  222   999999999


Q ss_pred             CCCcceEEEeec
Q psy5694          90 DGYKSYRCRTVN  101 (129)
Q Consensus        90 D~g~~Y~C~a~N  101 (129)
                      |.. .|.|....
T Consensus        91 DtA-vYYCAr~~  101 (132)
T d1tjgh1          91 DTA-TYFCAHRR  101 (132)
T ss_dssp             GCE-EEEEEEEC
T ss_pred             cce-EEEEEEec
Confidence            995 99998653

>d1igyb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.62  E-value=0.00052  Score=45.57  Aligned_cols=69  Identities=16%  Similarity=0.306  Sum_probs=44.7

Q ss_pred             EeCCeEEEEeeCCCCCCCc-eeEeEEeecceeeec------ccCCCceEEEccCccEEEeccCCCCCCcceEEEeeccc
Q psy5694          32 ILGNTAVLRCQIPSYMSEY-IIVTSWIQDDVNIYL------NTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI  103 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~~~-v~v~sW~~d~~~i~~------~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~l  103 (129)
                      ..++.+.|.|.+.++.++. ...++|.+|+..+..      ....++.|.+  +..|.|.--.| +.|..|+|.+.|.-
T Consensus        27 ~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~--~S~L~v~~~~W-~~g~~ytC~V~H~~  102 (116)
T d1igyb3          27 LITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRV--VSALPIMHQDW-LNGKEFKCRVNSAA  102 (116)
T ss_dssp             STTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCC--CCCEECCHHHH-HHTCCCBCCBCCSS
T ss_pred             ccCCCcEEEEEEecEeCCCCEEEEEECcCCeEcCCcEEcccEECCCCCEEE--EEEEEECHHHh-CCCCEEEEEEEeCC
Confidence            4588999999998875443 245789998844321      1123445544  35676554444 45569999999974

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.59  E-value=0.0083  Score=40.68  Aligned_cols=68  Identities=21%  Similarity=0.336  Sum_probs=45.9

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e---e---eeccc-------CCCceEEEcc--Cc---cEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V---N---IYLNT-------DTGGKYVVLS--SG---DLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~---~---i~~~~-------~~~~ry~vlp--sG---~L~I~nv~~   88 (129)
                      .+..|+++.|.|.+.++ ..+|  -+.|++-.  .   -   |.+..       ...+|+.+..  +.   .|.|++++.
T Consensus        11 ~~kpG~Sv~LsC~~SG~s~~~y--~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~   88 (119)
T d1qnzh_          11 LVKPGASVKMSCKASGYTFTTY--PIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTS   88 (119)
T ss_dssp             EECTTEEEEEEEEEETCCSSSS--CEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECG
T ss_pred             eECCCCCEEEEEEEeccCCCCC--CcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCc
Confidence            56779999999998764 3443  37897742  1   1   23221       1246887742  33   399999999


Q ss_pred             CCCCcceEEEee
Q psy5694          89 NDGYKSYRCRTV  100 (129)
Q Consensus        89 ~D~g~~Y~C~a~  100 (129)
                      ||.. .|.|...
T Consensus        89 eDsA-vYYCA~~   99 (119)
T d1qnzh_          89 DDSA-VYYCAIH   99 (119)
T ss_dssp             GGCE-EEEEEEC
T ss_pred             ccee-EEEEEEe
Confidence            9995 9999543

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=95.59  E-value=0.016  Score=39.61  Aligned_cols=70  Identities=21%  Similarity=0.446  Sum_probs=46.4

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc-----ee---eec-----c-------cCCCceEEEcc--Cc---cEEE
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD-----VN---IYL-----N-------TDTGGKYVVLS--SG---DLYV   83 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~-----~~---i~~-----~-------~~~~~ry~vlp--sG---~L~I   83 (129)
                      .|-.|.++.|.|.+.++ ..++  .++|++-.     .-   |..     +       ....+|+.+-.  +.   .|+|
T Consensus        11 lvkpg~sl~LsC~~SG~~~s~y--~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i   88 (127)
T d1i3ua_          11 LVQAGDSLKLSCEASGDSIGTY--VIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQM   88 (127)
T ss_dssp             ECCTTCCEEEEEEEESSCGGGS--EEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEE
T ss_pred             eECCCCCeEEEEEEcCCCCCCC--ceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEee
Confidence            56779999999999765 3443  46887631     11   111     0       01236887742  23   3999


Q ss_pred             eccCCCCCCcceEEEeecc
Q psy5694          84 FNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        84 ~nv~~~D~g~~Y~C~a~N~  102 (129)
                      +|++.||.. .|.|.....
T Consensus        89 ~~l~~eDtA-vYYCAr~~~  106 (127)
T d1i3ua_          89 NSLKPEDTA-VYYCAAKTT  106 (127)
T ss_dssp             CSCCGGGCE-EEEEEEESC
T ss_pred             eccccccee-EEEEEEEee
Confidence            999999995 999986543

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=95.43  E-value=0.038  Score=37.30  Aligned_cols=71  Identities=20%  Similarity=0.389  Sum_probs=48.1

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e------eeeccc-------CCCceEEEcc--Cc---cEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V------NIYLNT-------DTGGKYVVLS--SG---DLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~------~i~~~~-------~~~~ry~vlp--sG---~L~I~nv~~   88 (129)
                      .|..|++..|.|.+.++ ..+|  -++|++-.  .      .|.+..       ...+|+.+..  +.   -|+|++++.
T Consensus        11 ~vkpg~sl~LsC~~SG~~~s~y--~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~   88 (118)
T d2fbjh1          11 LVQPGGSLKLSCAASGFDFSKY--WMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS   88 (118)
T ss_dssp             EECTTCCEEEEEEEESSCGGGS--CEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG
T ss_pred             eECCCCCEEEEEEECCccccCC--ceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCC
Confidence            56789999999999776 3333  36887632  1      133321       1246888753  22   299999999


Q ss_pred             CCCCcceEEEeeccc
Q psy5694          89 NDGYKSYRCRTVNKI  103 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~l  103 (129)
                      ||.. .|.|...+..
T Consensus        89 eDtA-vYYCAr~~~~  102 (118)
T d2fbjh1          89 EDTA-LYYCARLHYY  102 (118)
T ss_dssp             GGCE-EEEEEEEETT
T ss_pred             Ccce-EEEeeEecCC
Confidence            9995 9999876543

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.009  Score=38.96  Aligned_cols=77  Identities=18%  Similarity=0.263  Sum_probs=44.8

Q ss_pred             EeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCC-CCCCcceEEEeecccCCeEEec
Q psy5694          32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATP-NDGYKSYRCRTVNKITGESQAS  110 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~-~D~g~~Y~C~a~N~ltge~k~S  110 (129)
                      |.|.+++|.|-  ....   ..+.|.+++..+... +.++-. -.-.-.|...+-+. ++.| -|.|.+...-..    .
T Consensus         8 ISGTtV~LTCP--~~~~---~~i~W~~n~~~~~~~-~~~~~~-~~~~~~l~L~dfSe~e~sG-yY~C~~~~~~~~----~   75 (91)
T d1xiwa_           8 ISGTTVILTCP--QYPG---SEILWQHNDKNIGGD-EDDKNI-GSDEDHLSLKEFSELEQSG-YYVCYPRGSKPE----D   75 (91)
T ss_dssp             EETTEEEEECS--SCTT---SCEEEEETTEEESSS-CSCTTE-EEETTEEEETTCCHHHHCE-EEEEEETTSCGG----G
T ss_pred             EeCCEEEEECC--CCCC---CceeeeeccccccCC-Cccccc-ccccceEEecccCccccCc-eEEEEcCCCCCC----C
Confidence            45999999994  3322   348999998776422 111100 11122466667666 6776 999998754211    2


Q ss_pred             ccceEEEEecC
Q psy5694         111 VFQTRLSITGK  121 (129)
Q Consensus       111 ~~~~~L~V~ep  121 (129)
                      . ...|.++..
T Consensus        76 ~-~~~LYLKAR   85 (91)
T d1xiwa_          76 A-NFYLYLRAR   85 (91)
T ss_dssp             C-CEEEEEEEC
T ss_pred             c-ceEEEEEeE
Confidence            1 346777654

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=95.41  E-value=0.045  Score=36.81  Aligned_cols=70  Identities=20%  Similarity=0.344  Sum_probs=47.7

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--ee------eeccc------CCCceEEEcc--C---ccEEEeccCCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--VN------IYLNT------DTGGKYVVLS--S---GDLYVFNATPN   89 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~~------i~~~~------~~~~ry~vlp--s---G~L~I~nv~~~   89 (129)
                      .|-.|.+..|.|.+.++ ..+|  -++|++-.  .-      |....      ...+|+.+..  +   .-|+|++++.|
T Consensus        11 lvkPg~sl~LsC~~SG~~~~~~--~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~e   88 (116)
T d7fabh1          11 LVRPSQTLSLTCTVSGTSFDDY--YWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAA   88 (116)
T ss_dssp             EECTTSCEEEEEEEESSCSTTS--EEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEeeecCCCC--cceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccccc
Confidence            56779999999999765 4554  47887742  21      22211      1246877753  3   33999999999


Q ss_pred             CCCcceEEEeecc
Q psy5694          90 DGYKSYRCRTVNK  102 (129)
Q Consensus        90 D~g~~Y~C~a~N~  102 (129)
                      |.. .|.|.....
T Consensus        89 DtA-vYyCAr~~~  100 (116)
T d7fabh1          89 DTA-VYYCARNLI  100 (116)
T ss_dssp             GCE-EEEEEEECS
T ss_pred             cce-EEEeeeecC
Confidence            995 999976544

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.009  Score=38.65  Aligned_cols=55  Identities=33%  Similarity=0.569  Sum_probs=36.7

Q ss_pred             EeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCC-CCCCcceEEEeecccCCeE
Q psy5694          32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATP-NDGYKSYRCRTVNKITGES  107 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~-~D~g~~Y~C~a~N~ltge~  107 (129)
                      ..|.++.|-|--|.   +  .-|.|.+|+..           .++.+|+.+...|.. .|+| .|+|-   + +|+.
T Consensus        19 ~~~~~V~L~C~t~e---E--~~I~W~kd~~s-----------e~~~~GntltV~VkE~~~aG-nYTCh---k-~g~~   74 (87)
T d3d85d1          19 APGEMVVLTCDTPE---E--DGITWTLDQSS-----------EVLGSGKTLTIQVKEFGDAG-QYTCH---K-GGEV   74 (87)
T ss_dssp             CCCEEEEEECSSSC---C--SSCEEEETTCC-----------CCCEESSEEEEEECSGGGCE-EEEEE---E-TTEE
T ss_pred             CCccEEEEecCCCc---c--cccEEeeCCcc-----------ccccCCCEEEEEEEeccCCc-ceeEe---C-CCcE
Confidence            34778999998652   2  35899998611           233456766666766 5776 99994   3 4774

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.33  E-value=0.021  Score=38.63  Aligned_cols=70  Identities=17%  Similarity=0.306  Sum_probs=46.8

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e------eeeccc-------CCCceEEEcc--Cc---cEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V------NIYLNT-------DTGGKYVVLS--SG---DLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~------~i~~~~-------~~~~ry~vlp--sG---~L~I~nv~~   88 (129)
                      .|..|+++.|.|.+.++ ...+  .+.|++-.  .      .|.+..       ...+|+.+-.  +.   .|+|++++.
T Consensus        11 ~vkpG~sl~LsC~~SG~s~~~~--~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~   88 (120)
T d1pg7x1          11 LVKPGASVKISCKASGYSFTGH--LLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTS   88 (120)
T ss_dssp             EECTTCCEEEEEEEESSCGGGS--EEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             EECCCCCEEEEEEEccccCCCC--CcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCC
Confidence            56789999999998765 3333  47897732  2      123221       1246887742  22   399999999


Q ss_pred             CCCCcceEEEeecc
Q psy5694          89 NDGYKSYRCRTVNK  102 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~  102 (129)
                      ||.. .|.|.....
T Consensus        89 eDtA-~YYCAr~~~  101 (120)
T d1pg7x1          89 NDSA-VYYCAREDF  101 (120)
T ss_dssp             GGCE-EEEEEEECC
T ss_pred             Ccce-EEEeeecCC
Confidence            9995 999987543

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=95.31  E-value=0.021  Score=38.92  Aligned_cols=71  Identities=20%  Similarity=0.366  Sum_probs=48.5

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e------eeeccc-------CCCceEEEccC-----ccEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V------NIYLNT-------DTGGKYVVLSS-----GDLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~------~i~~~~-------~~~~ry~vlps-----G~L~I~nv~~   88 (129)
                      .|-.|.+..|.|.+.++ ..++  .++|++-.  .      .|.+..       ...+|+.|-.+     --|+|++++.
T Consensus        10 lvkpg~sl~LsC~~SG~~~~~~--~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~   87 (124)
T d1zvya1          10 SVQAGGSLRLSCAASGSTDSIE--YMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKS   87 (124)
T ss_dssp             ECCTTCCEEEEEEEESCSTTCC--EEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEEcCcccccc--cccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccC
Confidence            56779999999999765 4444  46897732  1      133321       11468877532     3399999999


Q ss_pred             CCCCcceEEEeeccc
Q psy5694          89 NDGYKSYRCRTVNKI  103 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~l  103 (129)
                      ||.. .|.|...+..
T Consensus        88 eDtA-vYYCAr~~~~  101 (124)
T d1zvya1          88 EDTA-IYTCGATRKY  101 (124)
T ss_dssp             GGCE-EEEEEECSSC
T ss_pred             Ccce-EEEEeecccc
Confidence            9995 9999876543

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.28  E-value=0.023  Score=38.46  Aligned_cols=69  Identities=17%  Similarity=0.304  Sum_probs=47.9

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e------eeeccc-------CCCceEEEccC-----ccEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V------NIYLNT-------DTGGKYVVLSS-----GDLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~------~i~~~~-------~~~~ry~vlps-----G~L~I~nv~~   88 (129)
                      .|-.|.+..|.|.+.++ ..+|  .++|++--  .      .|.+..       ...+|+.+..+     --|+|+|++.
T Consensus        11 ~vkpg~sl~LsC~~SG~~~~~y--~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~   88 (117)
T d1jpth1          11 LVQPGGSLRLSCAASGFNIKEY--YMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRA   88 (117)
T ss_dssp             EECTTCCEEEEEEEESSCGGGS--EEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             eECCCCCEEEEEEEcCCCCcCC--ceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCC
Confidence            56789999999999875 4554  57887742  1      133221       12478887532     2399999999


Q ss_pred             CCCCcceEEEeec
Q psy5694          89 NDGYKSYRCRTVN  101 (129)
Q Consensus        89 ~D~g~~Y~C~a~N  101 (129)
                      ||.+ .|.|...+
T Consensus        89 eDTA-vYYCAr~~  100 (117)
T d1jpth1          89 EDTA-VYYCARDT  100 (117)
T ss_dssp             GGCE-EEEEEEEC
T ss_pred             CCce-EEEEeecC
Confidence            9996 99996543

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=95.27  E-value=0.016  Score=39.48  Aligned_cols=70  Identities=17%  Similarity=0.320  Sum_probs=47.3

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc-----e---eeeccc-------CCCceEEEcc-----CccEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD-----V---NIYLNT-------DTGGKYVVLS-----SGDLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~-----~---~i~~~~-------~~~~ry~vlp-----sG~L~I~nv~~   88 (129)
                      .|..|.+..|.|.+.++ ..++  -+.|++-.     .   .|.+..       ...+|+.+-.     .--|+|++++.
T Consensus        11 lvkPg~sl~LsC~~SG~s~s~y--~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~   88 (122)
T d1bz7b1          11 LVQPGGSRKLSCAASGFTFSNF--GMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRS   88 (122)
T ss_dssp             EECTTCCEEEEEEEESSCGGGS--CEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEEcCCCCcCC--ceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeecc
Confidence            56789999999999875 3333  47887732     1   133221       1246887742     23499999999


Q ss_pred             CCCCcceEEEeecc
Q psy5694          89 NDGYKSYRCRTVNK  102 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~  102 (129)
                      ||.. .|.|...+.
T Consensus        89 eDTA-vYYCAr~~~  101 (122)
T d1bz7b1          89 EDTA-IYYCTRGGT  101 (122)
T ss_dssp             GGCE-EEEEEEECC
T ss_pred             cCce-EEEeecCCC
Confidence            9995 999976543

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=95.21  E-value=0.032  Score=37.05  Aligned_cols=68  Identities=21%  Similarity=0.290  Sum_probs=43.9

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc-----ee---eecc------cCCCceEEEcc--Cc---cEEEeccCCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD-----VN---IYLN------TDTGGKYVVLS--SG---DLYVFNATPN   89 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~-----~~---i~~~------~~~~~ry~vlp--sG---~L~I~nv~~~   89 (129)
                      .|-.|+++.|.|.+.++ ..++  .++|++-.     +-   |...      ....+|+.+..  +.   -|+|++++.|
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~--~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~e   81 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGG--FMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPE   81 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----C--CEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGG
T ss_pred             EecCCCCcEEEEEECCCCccCC--cEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcc
Confidence            35679999999999775 4443  36887742     11   2221      11246888753  22   3999999999


Q ss_pred             CCCcceEEEee
Q psy5694          90 DGYKSYRCRTV  100 (129)
Q Consensus        90 D~g~~Y~C~a~  100 (129)
                      |.. .|.|...
T Consensus        82 DtA-vYyCA~~   91 (107)
T d1sjva_          82 DTA-VYYCYTH   91 (107)
T ss_dssp             GCS-EEEEEEC
T ss_pred             cce-eeeEecc
Confidence            996 9999754

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.16  E-value=0.02  Score=39.22  Aligned_cols=68  Identities=21%  Similarity=0.370  Sum_probs=46.6

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e------eeeccc-------CCCceEEEcc--C---ccEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V------NIYLNT-------DTGGKYVVLS--S---GDLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~------~i~~~~-------~~~~ry~vlp--s---G~L~I~nv~~   88 (129)
                      .+..|++..|.|.+.++ ..+|  .++|++--  +      .|.+..       ...+|+.+-.  +   --|+|+|++.
T Consensus        10 ~~kPg~sl~LsC~~SG~~~~~y--~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~~   87 (126)
T d1lmka1          10 LMKPGRSLKISCKTTGYIFSNY--WIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLTS   87 (126)
T ss_dssp             EECTTCCEEEEEEEESSCTTTE--EEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEEccCCCCCC--CCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccCC
Confidence            66789999999999876 4443  47897732  1      133221       1247887742  2   2499999999


Q ss_pred             CCCCcceEEEee
Q psy5694          89 NDGYKSYRCRTV  100 (129)
Q Consensus        89 ~D~g~~Y~C~a~  100 (129)
                      ||.. .|.|...
T Consensus        88 eDTA-vYYCAr~   98 (126)
T d1lmka1          88 EDSA-VYYCARG   98 (126)
T ss_dssp             GGCE-EEEEEEE
T ss_pred             Ccce-EEEEeec
Confidence            9995 9999753

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=95.13  E-value=0.019  Score=38.84  Aligned_cols=69  Identities=20%  Similarity=0.366  Sum_probs=46.5

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc-----ee---eecc------cCCCceEEEccC--c---cEEEeccCCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD-----VN---IYLN------TDTGGKYVVLSS--G---DLYVFNATPN   89 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~-----~~---i~~~------~~~~~ry~vlps--G---~L~I~nv~~~   89 (129)
                      .|-.|++..|.|.+.++ ..+|  .+.|++-.     +-   |...      ....+|+.+-.+  .   .|+|++++.|
T Consensus        10 ~vkPg~sl~LsC~~SG~~~s~y--~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~e   87 (119)
T d1kxvc_          10 TVPAGGSLRLSCAASGNTLCTY--DMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPD   87 (119)
T ss_dssp             EECTTCCEEEEEEEESCTTCCE--EEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEcCCCccCC--ceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcC
Confidence            56789999999998765 3443  47897742     11   2211      012368887532  2   4999999999


Q ss_pred             CCCcceEEEeec
Q psy5694          90 DGYKSYRCRTVN  101 (129)
Q Consensus        90 D~g~~Y~C~a~N  101 (129)
                      |.. .|.|....
T Consensus        88 DtA-~YYCAr~~   98 (119)
T d1kxvc_          88 DTA-MYYCKPSL   98 (119)
T ss_dssp             GCE-EEEEEEEE
T ss_pred             Ccc-eEeeeecc
Confidence            995 99997654

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.12  E-value=0.029  Score=38.75  Aligned_cols=70  Identities=16%  Similarity=0.229  Sum_probs=48.0

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e------eeeccc-------CCCceEEEccC-----ccEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V------NIYLNT-------DTGGKYVVLSS-----GDLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~------~i~~~~-------~~~~ry~vlps-----G~L~I~nv~~   88 (129)
                      .|..|.+..|.|.+.++ ..+|  -++|++--  .      .|.+..       ...+|+.+..+     --|+|++++.
T Consensus        10 ~vkPg~sl~LsC~~SG~~~s~y--~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~~   87 (133)
T d1rzfh1          10 VNKPGSSVKVSCQASGATLNSH--AFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLRS   87 (133)
T ss_dssp             EECTTCCEEEEEEESSSCSTTE--EEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCEEEEEEEcCCCccCC--CCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCCC
Confidence            67889999999999875 5554  47887721  1      122211       12478887532     3499999999


Q ss_pred             CCCCcceEEEeecc
Q psy5694          89 NDGYKSYRCRTVNK  102 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~  102 (129)
                      ||.. .|.|.....
T Consensus        88 eDtA-~YYCAr~~~  100 (133)
T d1rzfh1          88 DDTA-VYYCASNSI  100 (133)
T ss_dssp             GGCE-EEEEEEEEC
T ss_pred             CCCE-EEEeeeccC
Confidence            9995 999966543

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.07  E-value=0.021  Score=38.68  Aligned_cols=69  Identities=19%  Similarity=0.324  Sum_probs=46.4

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e------eeeccc-------CCCceEEEcc--Cc---cEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V------NIYLNT-------DTGGKYVVLS--SG---DLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~------~i~~~~-------~~~~ry~vlp--sG---~L~I~nv~~   88 (129)
                      .+..|.+..|.|.+.++ ..+|  .++|++-.  +      .|.+..       ...+|+.+..  +.   -|+|++++.
T Consensus        11 ~~kpg~sl~LsC~~SG~~~~~~--~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~   88 (119)
T d1rz7h1          11 VKKPGATVKISCKASGYTFSDF--YMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRS   88 (119)
T ss_dssp             EECTTCCEEEEEEEESSCGGGS--CEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCEEEEEEEcCCCCcCC--ceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCc
Confidence            56779999999999775 3443  46886632  1      132211       1246888752  22   399999999


Q ss_pred             CCCCcceEEEeec
Q psy5694          89 NDGYKSYRCRTVN  101 (129)
Q Consensus        89 ~D~g~~Y~C~a~N  101 (129)
                      ||.. .|.|....
T Consensus        89 eDTA-vYYCAr~~  100 (119)
T d1rz7h1          89 EDTA-VYYCAADP  100 (119)
T ss_dssp             GGCE-EEEEEECT
T ss_pred             ccce-EEEEeecC
Confidence            9995 99997653

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.05  E-value=0.027  Score=38.23  Aligned_cols=71  Identities=20%  Similarity=0.381  Sum_probs=48.0

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e------eeeccc-------CCCceEEEccC--c---cEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V------NIYLNT-------DTGGKYVVLSS--G---DLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~------~i~~~~-------~~~~ry~vlps--G---~L~I~nv~~   88 (129)
                      .|..|+++.|.|.+.++ ...|  .++|++-.  .      .|.+..       ...+|+.+..+  .   .|+|++++.
T Consensus        11 ~vkpg~sl~LsC~~SG~s~s~y--~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~   88 (121)
T d1ol0a_          11 LVQPGGSLRLSCAASGFTFSSY--AMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRA   88 (121)
T ss_dssp             EECTTCCEEEEEEEESSCGGGS--CEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEEcCcCCcCC--ceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeeccc
Confidence            56789999999999765 4444  47887632  1      133221       12468888642  2   399999999


Q ss_pred             CCCCcceEEEeeccc
Q psy5694          89 NDGYKSYRCRTVNKI  103 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~l  103 (129)
                      ||.. .|.|......
T Consensus        89 eDtA-vYYCAr~~~~  102 (121)
T d1ol0a_          89 EDTA-VYYCAREPRI  102 (121)
T ss_dssp             GGCE-EEEEEECCST
T ss_pred             ccce-EEEEEEecCc
Confidence            9995 9999765433

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=94.95  E-value=0.023  Score=38.61  Aligned_cols=70  Identities=21%  Similarity=0.319  Sum_probs=44.9

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc-----ee---eecccC------CCceEEEcc--Cc---cEEEeccCCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD-----VN---IYLNTD------TGGKYVVLS--SG---DLYVFNATPN   89 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~-----~~---i~~~~~------~~~ry~vlp--sG---~L~I~nv~~~   89 (129)
                      .|-.|+++.|.|.+.++ .....--+.|++-.     .-   |.....      ..+|+.+..  +.   .|+|++++.|
T Consensus        11 ~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~e   90 (123)
T d1r0ah1          11 IVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVETA   90 (123)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeecccc
Confidence            45679999999998654 22211246897631     11   232211      236887743  22   3999999999


Q ss_pred             CCCcceEEEee
Q psy5694          90 DGYKSYRCRTV  100 (129)
Q Consensus        90 D~g~~Y~C~a~  100 (129)
                      |.. .|.|...
T Consensus        91 DsA-vYyCAr~  100 (123)
T d1r0ah1          91 DTA-IYYCAQS  100 (123)
T ss_dssp             GCE-EEEEEEE
T ss_pred             cce-EEeeccc
Confidence            995 9999743

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.75  E-value=0.019  Score=39.14  Aligned_cols=69  Identities=16%  Similarity=0.310  Sum_probs=45.3

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--ee------eecccC---------CCceEEEccC-----ccEEEecc
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--VN------IYLNTD---------TGGKYVVLSS-----GDLYVFNA   86 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~~------i~~~~~---------~~~ry~vlps-----G~L~I~nv   86 (129)
                      .|-.|.+..|.|.+.++ ..+  --++|++-.  .-      |....+         ..+|+.+-.+     --|+|+|+
T Consensus        11 ~vkPG~sl~LsC~~SG~~~~~--~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~~L   88 (121)
T d1nfdf1          11 LVQPGSSLKVSCAASGFTFSD--FWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNRL   88 (121)
T ss_dssp             EECTTCEEEEEEEEESSCGGG--EEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEESC
T ss_pred             eECCCCCEEEEEEEcCCCCcC--CceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceeccc
Confidence            67889999999999876 333  347898732  11      221101         1346665431     22999999


Q ss_pred             CCCCCCcceEEEeec
Q psy5694          87 TPNDGYKSYRCRTVN  101 (129)
Q Consensus        87 ~~~D~g~~Y~C~a~N  101 (129)
                      +.||.. .|.|....
T Consensus        89 ~~eDTA-vYYCAr~~  102 (121)
T d1nfdf1          89 RVDDTA-IYYCTRAG  102 (121)
T ss_dssp             CGGGCE-ECEEEEEE
T ss_pred             CCCcce-EEEEeccC
Confidence            999995 99997653

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.72  E-value=0.026  Score=38.48  Aligned_cols=67  Identities=22%  Similarity=0.412  Sum_probs=45.7

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc-----e---eeeccc-------CCCceEEEcc--C---ccEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD-----V---NIYLNT-------DTGGKYVVLS--S---GDLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~-----~---~i~~~~-------~~~~ry~vlp--s---G~L~I~nv~~   88 (129)
                      .+..|+++.|.|.+.++ ..+|  .++|++-.     +   .|.+..       ...+|+.+-.  +   --|+|++++.
T Consensus        11 ~~kpg~sl~LsC~~SG~~~~~~--~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L~~   88 (124)
T d2b1hh1          11 VKKSGESLKISCQTSGYSFSDY--WIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSLKP   88 (124)
T ss_dssp             EEETTCCEEEEEEEESSCGGGS--CEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSCCG
T ss_pred             eECCCCCEEEEEEEcCCCCcCC--cCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeecccc
Confidence            67889999999999875 3443  37897721     1   133321       1247887753  2   2499999999


Q ss_pred             CCCCcceEEEe
Q psy5694          89 NDGYKSYRCRT   99 (129)
Q Consensus        89 ~D~g~~Y~C~a   99 (129)
                      ||.. .|.|..
T Consensus        89 eDTA-~YYCAR   98 (124)
T d2b1hh1          89 SDTA-LYYCAR   98 (124)
T ss_dssp             GGCE-EEEEEE
T ss_pred             ccce-EEEEee
Confidence            9995 999954

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.69  E-value=0.03  Score=37.88  Aligned_cols=66  Identities=20%  Similarity=0.411  Sum_probs=45.3

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e------eeeccc-------CCCceEEEcc--Cc---cEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V------NIYLNT-------DTGGKYVVLS--SG---DLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~------~i~~~~-------~~~~ry~vlp--sG---~L~I~nv~~   88 (129)
                      .+-.|+++.|.|.+.++ ..+|  -++|++-.  .      .|.+..       ...+|+.+..  +.   -|+|++++.
T Consensus        11 ~~kPG~sl~LsC~~SG~s~~~y--~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~   88 (118)
T d1nlbh1          11 LKKPGETVKISCKASGYTFTDF--SMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKN   88 (118)
T ss_dssp             EECTTCCEEEEEEEESSCGGGS--CEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCG
T ss_pred             eECCCCCEEEEEEEcCCCCCCC--ceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeeccc
Confidence            56789999999999765 4444  37887632  1      133221       1146888753  22   399999999


Q ss_pred             CCCCcceEEE
Q psy5694          89 NDGYKSYRCR   98 (129)
Q Consensus        89 ~D~g~~Y~C~   98 (129)
                      ||.. .|.|.
T Consensus        89 eDtA-vYYCA   97 (118)
T d1nlbh1          89 EDTA-TYFCA   97 (118)
T ss_dssp             GGCE-EEEEE
T ss_pred             Ccce-EEEEe
Confidence            9996 99995

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=94.68  E-value=0.032  Score=37.61  Aligned_cols=69  Identities=14%  Similarity=0.309  Sum_probs=47.3

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e---e---eeccc------CCCceEEEcc--Cc---cEEEeccCCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V---N---IYLNT------DTGGKYVVLS--SG---DLYVFNATPN   89 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~---~---i~~~~------~~~~ry~vlp--sG---~L~I~nv~~~   89 (129)
                      .|..|+++.|.|.+.++ ..+|  -++|++-.  .   -   |.+..      ...+|+.+..  +.   -|+|+|++.|
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~~y--~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~e   88 (116)
T d1a2yb_          11 LVAPSQSLSITCTVSGFSLTGY--GVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTD   88 (116)
T ss_dssp             EECTTSCEEEEEEEESSCTTSS--EEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEcccccCCC--CCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeec
Confidence            57789999999999765 4454  47887742  1   1   22211      1246777753  32   3999999999


Q ss_pred             CCCcceEEEeec
Q psy5694          90 DGYKSYRCRTVN  101 (129)
Q Consensus        90 D~g~~Y~C~a~N  101 (129)
                      |.. .|.|....
T Consensus        89 DTA-vYYCAr~~   99 (116)
T d1a2yb_          89 DTA-RYYCARER   99 (116)
T ss_dssp             GCE-EEEEEEES
T ss_pred             cce-EEEEEEeC
Confidence            995 99998654

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.67  E-value=0.023  Score=38.42  Aligned_cols=67  Identities=24%  Similarity=0.457  Sum_probs=45.7

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e------eeeccc-------CCCceEEEcc--C---ccEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V------NIYLNT-------DTGGKYVVLS--S---GDLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~------~i~~~~-------~~~~ry~vlp--s---G~L~I~nv~~   88 (129)
                      .+-.|.+..|.|.+.++ ..+|  .++|++-.  .      .|.+..       ...+|+.+-.  +   --|+|++++.
T Consensus        11 ~~kPg~sl~LsC~~SG~s~~~~--~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL~~   88 (116)
T d1mjuh1          11 LVKPGASVKLSCKASGYTFTNY--WINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTS   88 (116)
T ss_dssp             EECTTCCEEEEEEEESSCGGGS--CEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             EECCCCCEEEEEEEccCccccC--ceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccccCC
Confidence            67889999999999875 4443  47897732  1      133321       1135877742  2   2499999999


Q ss_pred             CCCCcceEEEe
Q psy5694          89 NDGYKSYRCRT   99 (129)
Q Consensus        89 ~D~g~~Y~C~a   99 (129)
                      ||.. .|.|..
T Consensus        89 eDtA-vYYCAr   98 (116)
T d1mjuh1          89 DDSA-VYYCAN   98 (116)
T ss_dssp             GGCE-EEEEEE
T ss_pred             CCce-EEEEcc
Confidence            9996 999964

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.59  E-value=0.032  Score=37.89  Aligned_cols=69  Identities=16%  Similarity=0.316  Sum_probs=47.1

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e------eeeccc-------CCCceEEEcc--C---ccEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V------NIYLNT-------DTGGKYVVLS--S---GDLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~------~i~~~~-------~~~~ry~vlp--s---G~L~I~nv~~   88 (129)
                      .|..|++..|.|.+.++ ..+|  -++|++-.  .      .|.+..       ...+|+.+-.  +   --|+|++++.
T Consensus        11 ~vkpg~sl~LsC~vSG~s~~~~--~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~~   88 (120)
T d1ad9b1          11 VKKPGSSVKVSCKASGYTFTDY--YINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLRS   88 (120)
T ss_dssp             EECTTCCEEEEEEEESSCGGGS--EEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCEEEEEEEcCCCCcCC--ccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccCC
Confidence            67889999999999875 4443  47897742  1      133221       1247877742  2   2399999999


Q ss_pred             CCCCcceEEEeec
Q psy5694          89 NDGYKSYRCRTVN  101 (129)
Q Consensus        89 ~D~g~~Y~C~a~N  101 (129)
                      ||.. .|.|....
T Consensus        89 eDTA-vYYCAr~~  100 (120)
T d1ad9b1          89 EDTA-FYFCAREK  100 (120)
T ss_dssp             GGCE-EEEEEEEB
T ss_pred             Ccce-EEEEEEcC
Confidence            9995 99997643

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=94.57  E-value=0.025  Score=37.77  Aligned_cols=69  Identities=14%  Similarity=0.235  Sum_probs=47.0

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e------eeeccc---------CCCceEEEccC-----ccEEEecc
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V------NIYLNT---------DTGGKYVVLSS-----GDLYVFNA   86 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~------~i~~~~---------~~~~ry~vlps-----G~L~I~nv   86 (129)
                      .|..|.++.|.|.+.++ ..++  .++|++-.  .      .|.+..         ...+|+.+..+     .-|+|+++
T Consensus        11 ~vkPG~Sl~LsC~~SG~t~~~~--~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL   88 (109)
T d2ck0h1          11 LVQPRGSLKLSCAASGFTFNTD--AMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNL   88 (109)
T ss_dssp             EECTTCCEEEEEEEESSCGGGS--CEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             eECCCCCeEEEEEECCCccccc--ccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCC
Confidence            67889999999999765 3333  47887732  1      132211         12368887531     34999999


Q ss_pred             CCCCCCcceEEEeec
Q psy5694          87 TPNDGYKSYRCRTVN  101 (129)
Q Consensus        87 ~~~D~g~~Y~C~a~N  101 (129)
                      +.||.. .|.|...+
T Consensus        89 ~~eDTA-vYYCAr~~  102 (109)
T d2ck0h1          89 KTEDTG-IYYCVRGR  102 (109)
T ss_dssp             CGGGCE-EEEEEEEC
T ss_pred             CHhHCE-EEEEEEcC
Confidence            999996 99998543

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.50  E-value=0.036  Score=37.44  Aligned_cols=67  Identities=21%  Similarity=0.350  Sum_probs=45.5

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e------eeecccC-------CCceEEEcc--C---ccEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V------NIYLNTD-------TGGKYVVLS--S---GDLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~------~i~~~~~-------~~~ry~vlp--s---G~L~I~nv~~   88 (129)
                      .+-.|+++.|.|.+.++ ..+|  .++|++-.  .      .|.+...       ..+|+.+..  +   .-|+|++++.
T Consensus        11 ~~kpg~sl~lsC~~SG~~~~~y--~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~~   88 (118)
T d2jelh1          11 LVRPGVSVKISCKGSGYTFTTY--AMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLTS   88 (118)
T ss_dssp             EECTTCCEEEEEEEESSCGGGS--EEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             eECCCCCEEEEEEEcCCCCCCC--ceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeeccccccc
Confidence            56789999999999775 4444  57998742  1      2332210       136777652  1   2499999999


Q ss_pred             CCCCcceEEEe
Q psy5694          89 NDGYKSYRCRT   99 (129)
Q Consensus        89 ~D~g~~Y~C~a   99 (129)
                      ||.. .|.|..
T Consensus        89 eDTA-vYYCAr   98 (118)
T d2jelh1          89 EDSA-IYYCAR   98 (118)
T ss_dssp             GGCE-EEEEEE
T ss_pred             Ccce-eeeEEE
Confidence            9995 999943

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.46  E-value=0.033  Score=38.15  Aligned_cols=68  Identities=19%  Similarity=0.321  Sum_probs=46.8

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e------eeeccc-------CCCceEEEcc--C---ccEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V------NIYLNT-------DTGGKYVVLS--S---GDLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~------~i~~~~-------~~~~ry~vlp--s---G~L~I~nv~~   88 (129)
                      .+-.|++..|.|.+.++ ..+|  -++|++--  .      .|.+..       ...+|+.+..  +   .-|+|++++.
T Consensus        11 ~~kpg~sl~lsC~~SG~~~~~y--~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~~   88 (127)
T d1n0xh1          11 VKKPGASVKVSCQASGYRFSNF--VIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRS   88 (127)
T ss_dssp             EECTTCCEEEEEEEESSCGGGS--CEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             eECCCCCEEEEEEEcCCCCCCC--CEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccCC
Confidence            67789999999999875 4444  36887732  1      233321       1246887753  2   2399999999


Q ss_pred             CCCCcceEEEee
Q psy5694          89 NDGYKSYRCRTV  100 (129)
Q Consensus        89 ~D~g~~Y~C~a~  100 (129)
                      ||.. .|.|.-.
T Consensus        89 eDtA-vYYCAR~   99 (127)
T d1n0xh1          89 ADTA-VYYCARV   99 (127)
T ss_dssp             GGCE-EEEEEEC
T ss_pred             CCce-EEEEEec
Confidence            9995 9999743

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=94.46  E-value=0.046  Score=36.99  Aligned_cols=68  Identities=22%  Similarity=0.282  Sum_probs=45.9

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e---e---eecc------cCCCceEEEcc--Cc---cEEEeccCCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V---N---IYLN------TDTGGKYVVLS--SG---DLYVFNATPN   89 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~---~---i~~~------~~~~~ry~vlp--sG---~L~I~nv~~~   89 (129)
                      .|..|.++.|.|.+.++ ..+|  -++|++-.  .   -   |.+.      ....+|+.+..  +.   .|+|+|++.|
T Consensus        11 ~vkPG~sl~LsC~~SG~~~~~y--~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~e   88 (120)
T d1dn0b1          11 LLKPSETLSLTCAVYGGSFSDY--YWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAA   88 (120)
T ss_dssp             EECTTSCEEEEEEEESSCCSSC--CEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EECCCCCEEEEEEEccccCccC--cceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccccc
Confidence            57789999999999765 3333  36887732  1   1   2221      11247888863  32   3999999999


Q ss_pred             CCCcceEEEee
Q psy5694          90 DGYKSYRCRTV  100 (129)
Q Consensus        90 D~g~~Y~C~a~  100 (129)
                      |.. .|.|...
T Consensus        89 DtA-~YYCAr~   98 (120)
T d1dn0b1          89 DTA-VYYCARP   98 (120)
T ss_dssp             GCE-EEEEEEC
T ss_pred             ccc-EEEEEee
Confidence            995 9999533

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.38  E-value=0.039  Score=37.33  Aligned_cols=69  Identities=20%  Similarity=0.329  Sum_probs=45.9

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e---e---eeccc-------CCCceEEEcc--Cc---cEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V---N---IYLNT-------DTGGKYVVLS--SG---DLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~---~---i~~~~-------~~~~ry~vlp--sG---~L~I~nv~~   88 (129)
                      .|..|.++.|.|.+.++ ...+  -+.|++-.  .   -   |.+..       ...+|+.+..  +.   -|+|+|++.
T Consensus        11 ~~kpG~sv~LsC~~SG~~~s~~--~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~   88 (121)
T d1j05b_          11 LVEPGASVKLSCTASGFNIKDT--YMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTS   88 (121)
T ss_dssp             EECTTCCEEEEEEEESSCGGGS--EEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             eECCCCCEEEEEEEecCCCCCC--CcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCc
Confidence            57779999999998654 3333  47886632  1   1   22211       1235887742  22   399999999


Q ss_pred             CCCCcceEEEeec
Q psy5694          89 NDGYKSYRCRTVN  101 (129)
Q Consensus        89 ~D~g~~Y~C~a~N  101 (129)
                      ||.. .|.|....
T Consensus        89 eDtA-vYYCAr~~  100 (121)
T d1j05b_          89 EDTA-VYYCAPFG  100 (121)
T ss_dssp             GGCE-EEEEEEEB
T ss_pred             Ccce-EEEeEeec
Confidence            9995 99997643

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=94.25  E-value=0.063  Score=36.32  Aligned_cols=68  Identities=19%  Similarity=0.371  Sum_probs=45.9

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e------eeeccc---------CCCceEEEcc--Cc---cEEEecc
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V------NIYLNT---------DTGGKYVVLS--SG---DLYVFNA   86 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~------~i~~~~---------~~~~ry~vlp--sG---~L~I~nv   86 (129)
                      .|-.|.+..|.|.+.++ ...|  -++|++-.  .      .|.+..         ...+|+.+..  +.   -|+|+++
T Consensus        11 ~vkpG~sl~LsC~~SG~s~~~y--~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L   88 (120)
T d1dlfh_          11 LVQPGGSMKLSCATSGFTFSDA--WMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTL   88 (120)
T ss_dssp             EECTTCCEEEEEEEESSCTTTC--EEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             eECCCCCeEEEEEECCccCcCC--ceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeec
Confidence            56779999999999765 4444  46897732  2      122211         1136887753  22   4999999


Q ss_pred             CCCCCCcceEEEee
Q psy5694          87 TPNDGYKSYRCRTV  100 (129)
Q Consensus        87 ~~~D~g~~Y~C~a~  100 (129)
                      +.||.. .|.|...
T Consensus        89 ~~eDtA-vYYCA~~  101 (120)
T d1dlfh_          89 RAEDTG-IYYCTGI  101 (120)
T ss_dssp             CGGGCE-EEEEEEE
T ss_pred             cCCCce-EEEeeEe
Confidence            999995 9999654

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.25  E-value=0.11  Score=33.77  Aligned_cols=83  Identities=16%  Similarity=0.221  Sum_probs=52.9

Q ss_pred             eeEEEeCCeEEEEeeCCCCCCCceeEeEEeec-c---eeeecccCCCceEEEc-cCc-----cEEEeccCCCCCCcceEE
Q psy5694          28 EHNVILGNTAVLRCQIPSYMSEYIIVTSWIQD-D---VNIYLNTDTGGKYVVL-SSG-----DLYVFNATPNDGYKSYRC   97 (129)
Q Consensus        28 ~~~V~~GntAvL~C~vp~~~~~~v~v~sW~~d-~---~~i~~~~~~~~ry~vl-psG-----~L~I~nv~~~D~g~~Y~C   97 (129)
                      .+.+..|+.--|+|-+.--.  ..|.++|-|- +   ..|.-   .-+++.-- ..+     -|+..-+-.+|.| +|+|
T Consensus        12 ~hs~~~G~~f~leCPVkYC~--~RPnVtWCKlngt~cv~Le~---~pq~~TsW~e~~nis~FvLhF~pvl~sDnG-sYrC   85 (104)
T d1xaua_          12 KHSAWTGELFKIECPVKYCV--HRPNVTWCKHNGTIWVPLEV---GPQLYTSWEENRSVPVFVLHFKPIHLSDNG-SYSC   85 (104)
T ss_dssp             EEEECTTSCEEEEEEEECSS--SCCCEEEEEECSSSEEECCC---BTTEEEEEECSSSSCEEEEEETTCCGGGCE-EEEE
T ss_pred             eeeEecCCceEecCcchhhc--CCCCcEEEEeCCcEEEEeec---CCccccchhhcCCeeEEEEEeeeeeecCCC-ceEE
Confidence            34789999999999985322  2467899773 3   33321   11333321 222     3888999999997 9999


Q ss_pred             EeecccCCeEEecccceEEEEe
Q psy5694          98 RTVNKITGESQASVFQTRLSIT  119 (129)
Q Consensus        98 ~a~N~ltge~k~S~~~~~L~V~  119 (129)
                      .|.-.  .+...| ++..|.|+
T Consensus        86 Sanf~--s~vieS-HSvti~Vt  104 (104)
T d1xaua_          86 STNFN--SQVINS-HSVTIHVR  104 (104)
T ss_dssp             EEEET--TEEEEC-CCEEEEEC
T ss_pred             ecCCC--hhheec-ceEEEEeC
Confidence            99743  343444 46666664

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.19  E-value=0.044  Score=37.00  Aligned_cols=68  Identities=18%  Similarity=0.248  Sum_probs=46.2

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e------eeeccc------CCCceEEEcc--Cc---cEEEeccCCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V------NIYLNT------DTGGKYVVLS--SG---DLYVFNATPN   89 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~------~i~~~~------~~~~ry~vlp--sG---~L~I~nv~~~   89 (129)
                      .|-.|.+..|.|.+.++ ..++  -+.|++--  .      .|.+..      ...+|+.+-.  +.   -|+|+|++.|
T Consensus        11 lvkPg~sl~LsC~~SG~~~~~~--~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~e   88 (117)
T d1c5db1          11 LVQPSQTLSLTCTVSGFPLTTN--GVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTE   88 (117)
T ss_dssp             EECTTSCEEEEEEECSSCTTTC--CEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEcCCCccCC--ceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccC
Confidence            56789999999999876 4443  36887732  1      122211      1246887753  22   3999999999


Q ss_pred             CCCcceEEEee
Q psy5694          90 DGYKSYRCRTV  100 (129)
Q Consensus        90 D~g~~Y~C~a~  100 (129)
                      |.. .|.|...
T Consensus        89 DtA-vYYCAr~   98 (117)
T d1c5db1          89 DTA-IYFCTRE   98 (117)
T ss_dssp             GCE-EEEEEEC
T ss_pred             cce-EEEEecc
Confidence            995 9999654

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=94.09  E-value=0.02  Score=38.81  Aligned_cols=68  Identities=16%  Similarity=0.312  Sum_probs=45.7

Q ss_pred             EEEeCCeEEEEeeCCCCC---CCceeEeEEeecc--ee------eecccC------CCceEEEcc--Cc---cEEEeccC
Q psy5694          30 NVILGNTAVLRCQIPSYM---SEYIIVTSWIQDD--VN------IYLNTD------TGGKYVVLS--SG---DLYVFNAT   87 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~---~~~v~v~sW~~d~--~~------i~~~~~------~~~ry~vlp--sG---~L~I~nv~   87 (129)
                      .|..|.++.|.|.+.++.   .+|  -++|++-.  .-      |..+..      ..+|+.+..  +.   -|+|.+++
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~~s~y--~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~   88 (120)
T d1ai1h1          11 VIKPSQSLSLTCIVSGFSITRTNY--CWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVT   88 (120)
T ss_dssp             EECSSSCEEEEEEEESSCTTSTTE--EEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCC
T ss_pred             eECCCCCEEEEEEEcccccccCcc--ccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeee
Confidence            577899999999987652   232  47897742  11      332111      136887753  22   39999999


Q ss_pred             CCCCCcceEEEee
Q psy5694          88 PNDGYKSYRCRTV  100 (129)
Q Consensus        88 ~~D~g~~Y~C~a~  100 (129)
                      .||.. .|.|...
T Consensus        89 ~eDtA-vYYCAr~  100 (120)
T d1ai1h1          89 NEDTA-MYYCSRE  100 (120)
T ss_dssp             GGGCE-EEEEEEE
T ss_pred             cccee-EEEEEec
Confidence            99995 9999754

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=94.09  E-value=0.08  Score=35.98  Aligned_cols=69  Identities=19%  Similarity=0.280  Sum_probs=46.5

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e------eeeccc-------CCCceEEEcc---C--ccEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V------NIYLNT-------DTGGKYVVLS---S--GDLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~------~i~~~~-------~~~~ry~vlp---s--G~L~I~nv~~   88 (129)
                      .|-.|++..|.|.+.++ ..++  -++|++-.  .      .|.+..       ...+|+.+..   .  .-|+|++++.
T Consensus        10 lvkPg~sl~LsC~~SG~~~s~y--~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~   87 (126)
T d1rjca1          10 SVQAGQSLRLSCATSGATSSSN--CMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKP   87 (126)
T ss_dssp             EECTTCCEEEEEECC-CTTTCS--EEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEECCCCCcCC--ceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCc
Confidence            56789999999999765 4454  47897732  1      233321       1236887752   1  2399999999


Q ss_pred             CCCCcceEEEeec
Q psy5694          89 NDGYKSYRCRTVN  101 (129)
Q Consensus        89 ~D~g~~Y~C~a~N  101 (129)
                      ||.. .|.|....
T Consensus        88 eDTA-vYYCAr~~   99 (126)
T d1rjca1          88 EDTA-MYYCAADT   99 (126)
T ss_dssp             GGCE-EEEEEECC
T ss_pred             ccCc-eeEEEeec
Confidence            9995 99997654

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=94.08  E-value=0.051  Score=36.49  Aligned_cols=68  Identities=18%  Similarity=0.354  Sum_probs=46.0

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e------eeeccc-------CCCceEEEcc--Cc---cEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V------NIYLNT-------DTGGKYVVLS--SG---DLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~------~i~~~~-------~~~~ry~vlp--sG---~L~I~nv~~   88 (129)
                      .|..|.++.|.|.+.++ ..+|  .++|++-.  .      .|.+..       ...+|+.+..  +.   -|+|++++.
T Consensus        11 ~vkpG~sl~LsC~~SG~~~s~~--~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~   88 (114)
T d1indh1          11 SVKPGGSLKLSCAASGFTLSGE--TMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRS   88 (114)
T ss_dssp             EECTTCCEEEEEEEESSCGGGS--CEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCEEEEEEECccCccCC--ceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeecc
Confidence            67889999999998765 3333  36887732  1      133321       1136888753  22   299999999


Q ss_pred             CCCCcceEEEee
Q psy5694          89 NDGYKSYRCRTV  100 (129)
Q Consensus        89 ~D~g~~Y~C~a~  100 (129)
                      ||.. .|.|...
T Consensus        89 eDtA-vYYCA~~   99 (114)
T d1indh1          89 EDTA-LYFCASH   99 (114)
T ss_dssp             GGCE-EEEEECG
T ss_pred             Cccc-EEEECCC
Confidence            9995 9999653

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.07  E-value=0.039  Score=37.75  Aligned_cols=70  Identities=17%  Similarity=0.321  Sum_probs=47.7

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e------eeeccc-------CCCceEEEccC-----ccEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V------NIYLNT-------DTGGKYVVLSS-----GDLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~------~i~~~~-------~~~~ry~vlps-----G~L~I~nv~~   88 (129)
                      .+..|++..|.|.+.++ ..+|  -++|++-.  .      .|.+..       ...+|+.+-.+     --|+|++++.
T Consensus        11 ~~kPg~sl~LsC~~SG~s~~~y--~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~   88 (127)
T d2fx7h1          11 VKRPGSSVTVSCKASGGSFSTY--ALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRP   88 (127)
T ss_dssp             EECTTCCEEEEEEEESSCSTTS--CEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCEEEEEEEcCCCCCCC--CeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCc
Confidence            56679999999999765 4444  47887632  1      133321       12468877532     3499999999


Q ss_pred             CCCCcceEEEeecc
Q psy5694          89 NDGYKSYRCRTVNK  102 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~  102 (129)
                      ||.. .|.|.....
T Consensus        89 eDTa-vYYCAR~~~  101 (127)
T d2fx7h1          89 EDTA-VYYCAREGT  101 (127)
T ss_dssp             GGCE-EEEEEEEEE
T ss_pred             ccce-EEEEeeccc
Confidence            9996 999987643

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.98  E-value=0.051  Score=37.01  Aligned_cols=69  Identities=23%  Similarity=0.430  Sum_probs=46.6

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc-----e---eeeccc-------CCCceEEEcc--C---ccEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD-----V---NIYLNT-------DTGGKYVVLS--S---GDLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~-----~---~i~~~~-------~~~~ry~vlp--s---G~L~I~nv~~   88 (129)
                      .+..|.+..|.|.+.++ ..+|  -++|++--     .   .|.+..       ...+|+.+-.  +   --|+|++++.
T Consensus        11 ~~kPG~sl~LsC~~SG~~~~~y--~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL~~   88 (124)
T d1yedb1          11 LVRPGTSVKLSCKTSGYIFTSY--WIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLKS   88 (124)
T ss_dssp             EECTTCEEEEEEEEESSCGGGS--CEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESCCG
T ss_pred             eECCCCCEEEEEEEcCCCccCC--ccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccccCC
Confidence            56789999999999875 3343  47887721     1   133321       1246887753  1   2399999999


Q ss_pred             CCCCcceEEEeec
Q psy5694          89 NDGYKSYRCRTVN  101 (129)
Q Consensus        89 ~D~g~~Y~C~a~N  101 (129)
                      ||.. .|.|....
T Consensus        89 eDTA-vYYCAR~~  100 (124)
T d1yedb1          89 EDSA-VYFCTRWG  100 (124)
T ss_dssp             GGCE-EEEEEECC
T ss_pred             Ccce-EEEecccC
Confidence            9995 99997543

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=93.96  E-value=0.066  Score=36.97  Aligned_cols=69  Identities=17%  Similarity=0.366  Sum_probs=47.6

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc-----e---eeeccc-------CCCceEEEccC-----ccEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD-----V---NIYLNT-------DTGGKYVVLSS-----GDLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~-----~---~i~~~~-------~~~~ry~vlps-----G~L~I~nv~~   88 (129)
                      .|..|+++.|.|.+.++ ..+|  .++|++-.     .   .|.+..       ...+|+.+-.+     --|+|.+++.
T Consensus        11 lvkPG~Sl~LsC~~SG~s~~~y--~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~   88 (135)
T d1ieha_          11 LVQPGGSLRVSCAASGFTFSSY--HMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKS   88 (135)
T ss_dssp             EECTTCEEEEEEEEESSCTTTS--CEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCS
T ss_pred             eECCCCCeEEEEEEcCCCCcCC--ceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCc
Confidence            67889999999999765 4443  47887632     1   133321       12468887532     3499999999


Q ss_pred             CCCCcceEEEeec
Q psy5694          89 NDGYKSYRCRTVN  101 (129)
Q Consensus        89 ~D~g~~Y~C~a~N  101 (129)
                      +|.. .|.|....
T Consensus        89 eDTA-vYYCAr~~  100 (135)
T d1ieha_          89 EDTA-VYYCAKYS  100 (135)
T ss_dssp             SSCE-EEEEEEBS
T ss_pred             ccce-eeEEEEec
Confidence            9995 99997654

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.87  E-value=0.056  Score=36.38  Aligned_cols=67  Identities=21%  Similarity=0.402  Sum_probs=45.0

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e------eeeccc-------CCCceEEEcc--C---ccEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V------NIYLNT-------DTGGKYVVLS--S---GDLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~------~i~~~~-------~~~~ry~vlp--s---G~L~I~nv~~   88 (129)
                      .+-.|.++.|.|.+.++ ..+|  .++|++-.  .      .|.+..       ...+|+.+-.  +   .-|+|++++.
T Consensus        11 ~~kPG~sl~LsC~~SG~s~s~~--~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~~   88 (117)
T d1mfah1          11 VARPGASVKMSCKASGYTFTNY--WMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTS   88 (117)
T ss_dssp             EECTTCCEEEEEEEESSCGGGS--EEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCEEEEEEEcccCCCCC--ceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccCC
Confidence            56779999999999775 4443  46887632  1      123211       1135776642  2   3499999999


Q ss_pred             CCCCcceEEEe
Q psy5694          89 NDGYKSYRCRT   99 (129)
Q Consensus        89 ~D~g~~Y~C~a   99 (129)
                      ||.. .|.|..
T Consensus        89 eDtA-vYYCAr   98 (117)
T d1mfah1          89 EDSA-VYYCTR   98 (117)
T ss_dssp             GGCE-EEEEEE
T ss_pred             Ccce-EEEEec
Confidence            9995 999964

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.79  E-value=0.068  Score=36.59  Aligned_cols=69  Identities=14%  Similarity=0.273  Sum_probs=46.7

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e------eeeccc-------CCCceEEEcc--C---ccEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V------NIYLNT-------DTGGKYVVLS--S---GDLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~------~i~~~~-------~~~~ry~vlp--s---G~L~I~nv~~   88 (129)
                      .+-.|.++.|.|.+.++ ..+|  -++|++-.  .      .|.+..       ...+|+.+-.  +   --|+|++++.
T Consensus        11 ~~kPg~sl~LsC~~SG~~~s~y--~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL~~   88 (130)
T d1rzga1          11 VKKPGSSVKVSCKASGGTFSNY--AINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSLRS   88 (130)
T ss_dssp             EECTTCCEEEEEECCSSCGGGC--CEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCEEEEEEEcCCCCCCC--ceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeecCC
Confidence            56779999999999876 4443  47887732  1      133221       1136777742  1   2299999999


Q ss_pred             CCCCcceEEEeec
Q psy5694          89 NDGYKSYRCRTVN  101 (129)
Q Consensus        89 ~D~g~~Y~C~a~N  101 (129)
                      ||.. .|.|....
T Consensus        89 eDtA-~YYCAr~~  100 (130)
T d1rzga1          89 EDTA-VFYCASPY  100 (130)
T ss_dssp             GGCE-EEEEEECC
T ss_pred             CccE-EEEEEEec
Confidence            9995 99998654

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=93.50  E-value=0.095  Score=35.31  Aligned_cols=69  Identities=20%  Similarity=0.295  Sum_probs=46.2

Q ss_pred             EEEeCCeEEEEeeCCCCC--CCceeEeEEeecc--e------eeeccc------CCCceEEEcc--C---ccEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSYM--SEYIIVTSWIQDD--V------NIYLNT------DTGGKYVVLS--S---GDLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~~--~~~v~v~sW~~d~--~------~i~~~~------~~~~ry~vlp--s---G~L~I~nv~~   88 (129)
                      .|..|.+..|.|.+.++.  .+|  -++|++-.  +      .|.+..      ...+|+.+-.  +   --|+|++++.
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~s~y--~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~   88 (119)
T d1ncwh1          11 LVKPSQSLSLTCTVTGYSITSDF--AWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTT   88 (119)
T ss_dssp             EECTTSCEEEEEEEESSCTTSSE--EEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             EECCCCCEEEEEEEccccccCCC--ccccceECCCcceeeeeeccccccchhchhccccceEecccccceeecccccccc
Confidence            677899999999998752  233  36897732  2      223221      1135777753  2   2399999999


Q ss_pred             CCCCcceEEEeec
Q psy5694          89 NDGYKSYRCRTVN  101 (129)
Q Consensus        89 ~D~g~~Y~C~a~N  101 (129)
                      ||.. .|.|....
T Consensus        89 eDTA-vYYCAr~~  100 (119)
T d1ncwh1          89 EDTA-TYYCAGLL  100 (119)
T ss_dssp             GGCE-EEEEEEEE
T ss_pred             CCce-EEEEeEec
Confidence            9995 99997543

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=93.39  E-value=0.09  Score=35.39  Aligned_cols=69  Identities=19%  Similarity=0.398  Sum_probs=46.5

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--ee------eecc------cCCCceEEEcc--C---ccEEEeccCCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--VN------IYLN------TDTGGKYVVLS--S---GDLYVFNATPN   89 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~~------i~~~------~~~~~ry~vlp--s---G~L~I~nv~~~   89 (129)
                      .+-.|.+..|.|.+.++ ..+|  .++|++-.  .-      |...      ....+|+.+..  +   --|+|++++.|
T Consensus        11 ~vkPG~Sl~LsC~~SG~~~~~y--~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~e   88 (118)
T d1lo4h1          11 LVKPGGSLTLSCEASGFTLRTY--GMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSE   88 (118)
T ss_dssp             EECTTCCEEEEEEEESSCTTTS--EEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEECCCcccCC--CcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCC
Confidence            56779999999999765 4444  46887742  11      2111      11245777753  2   34999999999


Q ss_pred             CCCcceEEEeec
Q psy5694          90 DGYKSYRCRTVN  101 (129)
Q Consensus        90 D~g~~Y~C~a~N  101 (129)
                      |.. .|.|....
T Consensus        89 DtA-~YyCAr~~   99 (118)
T d1lo4h1          89 DTA-IYYCARGT   99 (118)
T ss_dssp             GCE-EEEEEEEE
T ss_pred             cce-EEEecccC
Confidence            995 99997543

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.36  E-value=0.056  Score=36.51  Aligned_cols=68  Identities=18%  Similarity=0.305  Sum_probs=45.2

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e------eeeccc-------CCCceEEEcc--C---ccEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V------NIYLNT-------DTGGKYVVLS--S---GDLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~------~i~~~~-------~~~~ry~vlp--s---G~L~I~nv~~   88 (129)
                      .+..|.++.|.|.+.++ ..+|  -++|++-.  .      .|.+..       ...+|+.+-.  +   --|+|++++.
T Consensus        11 ~~kPg~sl~LsC~~SG~~~~~y--~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~~   88 (119)
T d1eapb1          11 LVKPGASVKISCKASGYISTDH--AIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLTS   88 (119)
T ss_dssp             EECTTCCEEEEEEEESSCGGGS--CEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             eECCCCCEEEEEEEccCcccCC--CCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecccC
Confidence            56779999999999765 3333  46887631  1      132210       1135777742  2   2499999999


Q ss_pred             CCCCcceEEEee
Q psy5694          89 NDGYKSYRCRTV  100 (129)
Q Consensus        89 ~D~g~~Y~C~a~  100 (129)
                      ||.. .|.|...
T Consensus        89 eDTA-vYYCAr~   99 (119)
T d1eapb1          89 EDSA-VYFCKRS   99 (119)
T ss_dssp             GGCE-EEEEEEC
T ss_pred             Ccce-EEEEEEe
Confidence            9995 9999643

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=93.33  E-value=0.17  Score=33.91  Aligned_cols=68  Identities=21%  Similarity=0.329  Sum_probs=46.1

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e------eeeccc-------CCCceEEEcc--C---ccEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V------NIYLNT-------DTGGKYVVLS--S---GDLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~------~i~~~~-------~~~~ry~vlp--s---G~L~I~nv~~   88 (129)
                      .+..|+++.|.|.+.++ ..++  -++|++-.  .      .|.+..       ...+|+.+..  +   .-|.|++++.
T Consensus        11 ~~kPg~sl~LsC~~SG~~~~~~--~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~~   88 (118)
T d1ct8b1          11 LVKPGASVKLSCKTSGFTFSSS--YINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTT   88 (118)
T ss_dssp             EECTTCCEEEEEEEESSCSTTC--EEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             eECCCCCEEEEEEEccccCCCC--CCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccCC
Confidence            56779999999999775 4444  47897732  1      133321       1135766642  1   3499999999


Q ss_pred             CCCCcceEEEee
Q psy5694          89 NDGYKSYRCRTV  100 (129)
Q Consensus        89 ~D~g~~Y~C~a~  100 (129)
                      ||.. .|.|...
T Consensus        89 eDtA-vYYCAr~   99 (118)
T d1ct8b1          89 EDSA-IYYCARY   99 (118)
T ss_dssp             GGCE-EEEEEEE
T ss_pred             Ccce-EEEEeee
Confidence            9995 9999654

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=93.24  E-value=0.086  Score=35.66  Aligned_cols=70  Identities=20%  Similarity=0.406  Sum_probs=47.5

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e------eeeccc---------CCCceEEEcc--Cc---cEEEecc
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V------NIYLNT---------DTGGKYVVLS--SG---DLYVFNA   86 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~------~i~~~~---------~~~~ry~vlp--sG---~L~I~nv   86 (129)
                      .|..|.+..|.|.+.++ ..+|  -++|++-.  .      .|....         ...+|+.|-.  +.   -|+|+++
T Consensus        11 ~vkpg~sl~LsC~~SG~s~~~y--~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL   88 (122)
T d1q9rb1          11 LVQSGGSLRLSCATSGFTFTDY--YMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTL   88 (122)
T ss_dssp             EECTTCCEEEEEEEESSCGGGS--CEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             eECCCCCEEEEEEEcCCCCcCC--ccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeee
Confidence            57789999999999765 3443  37898642  1      122211         1236888753  22   3999999


Q ss_pred             CCCCCCcceEEEeecc
Q psy5694          87 TPNDGYKSYRCRTVNK  102 (129)
Q Consensus        87 ~~~D~g~~Y~C~a~N~  102 (129)
                      +.||.. .|.|...+.
T Consensus        89 ~~eDTA-vYYCar~~~  103 (122)
T d1q9rb1          89 RAEDSA-TYYCARDHD  103 (122)
T ss_dssp             CGGGCE-EEEEEECCC
T ss_pred             ccCcce-EEEEEecCC
Confidence            999995 999987554

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.21  E-value=0.043  Score=36.79  Aligned_cols=67  Identities=21%  Similarity=0.350  Sum_probs=44.6

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e------eeeccc-------CCCceEEEcc--C---ccEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V------NIYLNT-------DTGGKYVVLS--S---GDLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~------~i~~~~-------~~~~ry~vlp--s---G~L~I~nv~~   88 (129)
                      .+..|+++.|.|.+.++ ..+|  .+.|.+-.  .      .|.+..       ...+|+.+..  +   ..|+|++++.
T Consensus        11 ~~kPG~sl~LsC~~SG~s~~~y--~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~   88 (115)
T d1f3dh1          11 LVKPGASVKVSCKASGYSFIDY--NIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTF   88 (115)
T ss_dssp             EECTTCCEEEEEEEESSCGGGS--CEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             EECCCCCEEEEEEEccccCCCC--CcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCc
Confidence            56789999999998765 3333  36887632  1      122211       0136777742  2   2499999999


Q ss_pred             CCCCcceEEEe
Q psy5694          89 NDGYKSYRCRT   99 (129)
Q Consensus        89 ~D~g~~Y~C~a   99 (129)
                      ||.. .|.|..
T Consensus        89 eDtA-vYYCAr   98 (115)
T d1f3dh1          89 EDSA-VYYCAN   98 (115)
T ss_dssp             GGCE-EEEEEE
T ss_pred             CCcE-EEEEec
Confidence            9995 999964

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.19  E-value=0.12  Score=35.19  Aligned_cols=70  Identities=17%  Similarity=0.289  Sum_probs=47.9

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc-----e---eeeccc-------CCCceEEEcc-----CccEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD-----V---NIYLNT-------DTGGKYVVLS-----SGDLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~-----~---~i~~~~-------~~~~ry~vlp-----sG~L~I~nv~~   88 (129)
                      .+..|.+..|.|.+.++ ..+|  -++|++-.     .   .|.+..       ...+|+.|..     .--|+|.+++.
T Consensus        11 ~~kpg~sl~LsC~~SG~s~~~y--~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~   88 (128)
T d2nxyd1          11 VKKPGSSVKVSCKASGDTFIRY--SFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRS   88 (128)
T ss_dssp             EECTTCCEEEEEEEESSCGGGE--EEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCEEEEEEEcCCCccCC--CcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeeccc
Confidence            57889999999999876 3332  46886632     1   122221       1247888852     23399999999


Q ss_pred             CCCCcceEEEeecc
Q psy5694          89 NDGYKSYRCRTVNK  102 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~  102 (129)
                      ||.. .|.|.....
T Consensus        89 eDTA-~YYCAr~~~  101 (128)
T d2nxyd1          89 DDTA-VYFCAGVYE  101 (128)
T ss_dssp             GGCE-EEEEEEEEC
T ss_pred             cCce-EEEEeEEec
Confidence            9995 999997654

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=93.08  E-value=0.046  Score=37.33  Aligned_cols=69  Identities=20%  Similarity=0.287  Sum_probs=44.8

Q ss_pred             EEEeCCeEEEEeeCCCC-CC-CceeEeEEeecc--ee------eeccc------CCCceEEEcc--Cc---cEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MS-EYIIVTSWIQDD--VN------IYLNT------DTGGKYVVLS--SG---DLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~-~~v~v~sW~~d~--~~------i~~~~------~~~~ry~vlp--sG---~L~I~nv~~   88 (129)
                      .|..|.+..|.|.+.++ .. .|  -++|++-.  .-      |....      ...+|+.+..  +.   -|+|++++.
T Consensus        11 lvkPg~sl~LsC~~SG~s~~s~y--~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~   88 (127)
T d3cx5j1          11 LVQPSQSLSLTCSVTGYSITSGY--YWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTT   88 (127)
T ss_dssp             EECTTSCEEEEEEEESSCTTTSS--EEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCEEEEEEEecccccCCC--cceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceecccc
Confidence            56779999999998765 22 23  36897732  11      22211      1235665542  33   299999999


Q ss_pred             CCCCcceEEEeec
Q psy5694          89 NDGYKSYRCRTVN  101 (129)
Q Consensus        89 ~D~g~~Y~C~a~N  101 (129)
                      ||.. .|.|....
T Consensus        89 eDtA-vYyCAr~~  100 (127)
T d3cx5j1          89 EDTA-TYYCARSE  100 (127)
T ss_dssp             GGCE-EEEEEEEE
T ss_pred             ccce-EEEeeeec
Confidence            9995 99998543

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=92.61  E-value=0.15  Score=34.63  Aligned_cols=70  Identities=20%  Similarity=0.361  Sum_probs=47.3

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e------eeecccC-------CCceEEEccC-----ccEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V------NIYLNTD-------TGGKYVVLSS-----GDLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~------~i~~~~~-------~~~ry~vlps-----G~L~I~nv~~   88 (129)
                      .+..|.+..|.|.+.++ ..++  .++|++-.  .      .|.+...       ..+|+.+..+     --|+|+|++.
T Consensus        11 ~~kpg~sl~LsC~~SG~~~~~~--~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~   88 (127)
T d2fb4h1          11 VVQPGRSLRLSCSSSGFIFSSY--AMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRP   88 (127)
T ss_dssp             EECTTCCEEEEEEEESSCGGGS--CEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEECCCCccCC--ceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeee
Confidence            56779999999999775 3333  47887732  1      1333211       1368877532     3499999999


Q ss_pred             CCCCcceEEEeecc
Q psy5694          89 NDGYKSYRCRTVNK  102 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~  102 (129)
                      +|.. .|.|.....
T Consensus        89 eDTA-~YYCAr~~~  101 (127)
T d2fb4h1          89 EDTG-VYFCARDGG  101 (127)
T ss_dssp             GGCE-EEEEEEECS
T ss_pred             ccee-EEEEEEecC
Confidence            9995 999976543

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.43  E-value=0.043  Score=36.92  Aligned_cols=69  Identities=17%  Similarity=0.329  Sum_probs=45.8

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e------eeecccCC------CceEEEcc--C---ccEEEeccCCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V------NIYLNTDT------GGKYVVLS--S---GDLYVFNATPN   89 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~------~i~~~~~~------~~ry~vlp--s---G~L~I~nv~~~   89 (129)
                      .|-.|.++.|.|.+.++ ..+|  -++|++-.  .      .|.+..+.      .+|+.+..  +   --|+|+|++.|
T Consensus        11 ~vkPg~sl~LsC~~SG~~~~~y--~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~e   88 (116)
T d1fn4b1          11 LVRPSETLSLTCTVSGFSLTSF--SVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTD   88 (116)
T ss_dssp             BCCTTSEECCEEECCSSCTTSS--EEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCC
T ss_pred             eECCCCCeEEEEEEeCcccccC--ccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCC
Confidence            45679999999999875 4444  47897732  2      12322111      25666642  2   23999999999


Q ss_pred             CCCcceEEEeec
Q psy5694          90 DGYKSYRCRTVN  101 (129)
Q Consensus        90 D~g~~Y~C~a~N  101 (129)
                      |.. .|.|....
T Consensus        89 DTA-vYyCAr~~   99 (116)
T d1fn4b1          89 DTG-TYYCTRDL   99 (116)
T ss_dssp             CCE-EEEEEEEC
T ss_pred             CCE-EEEEEeec
Confidence            995 99996543

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.00  E-value=0.12  Score=32.68  Aligned_cols=54  Identities=17%  Similarity=0.289  Sum_probs=32.2

Q ss_pred             eCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeec
Q psy5694          33 LGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVN  101 (129)
Q Consensus        33 ~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N  101 (129)
                      .-++++|.|...      ...+.|++|+..|... ....+-       |=+= -...|-.|.|+|.+.+
T Consensus        16 ~dg~V~L~Cn~~------~k~i~W~kdg~~i~~~-~~~~kt-------lnLG-~~~~DPRG~Y~C~~~~   69 (81)
T d1sy6a1          16 EDGSVLLTCDAE------AKNITWFKDGKMIGFL-TEDKKK-------WNLG-SNAKDPRGMYQCKGSQ   69 (81)
T ss_dssp             SSSEEEEEECSC------SSEEEEEETTEEEEEE-ESSCCC-------EEEE-EGGGCCEEEEEEESSS
T ss_pred             cCCeEEEEeCCC------CcEEEEecCCeEeecc-cCCcce-------eecC-CcccCCCcceEcCCCC
Confidence            467899999753      2368999998665321 011222       2222 2345666799997643

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.93  E-value=0.17  Score=34.12  Aligned_cols=69  Identities=20%  Similarity=0.378  Sum_probs=46.1

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e------eeeccc-------CCCceEEEcc--Cc---cEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V------NIYLNT-------DTGGKYVVLS--SG---DLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~------~i~~~~-------~~~~ry~vlp--sG---~L~I~nv~~   88 (129)
                      .+-.|+++.|.|.+.++ ..+|  -++|++-.  +      .|.+..       ...+|+.+-.  +.   -|+|++++.
T Consensus        11 l~kPg~sl~LsC~~SG~~~~~y--~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~~   88 (125)
T d1rihh1          11 LAKPGASMKMSCRASGYSFTSY--WIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLTS   88 (125)
T ss_dssp             EECTTCCEEEEEEEESSCGGGS--CEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCEEEEEEEccCCCCCC--CCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccCc
Confidence            66789999999998765 3443  36887632  1      133221       1236777743  22   299999999


Q ss_pred             CCCCcceEEEeec
Q psy5694          89 NDGYKSYRCRTVN  101 (129)
Q Consensus        89 ~D~g~~Y~C~a~N  101 (129)
                      ||.. .|.|....
T Consensus        89 eDtA-vYYCAR~~  100 (125)
T d1rihh1          89 EDSA-VYYCARES  100 (125)
T ss_dssp             GGCE-EEEEEEEC
T ss_pred             ccce-EEEEeeeC
Confidence            9995 99998654

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=91.82  E-value=0.13  Score=34.95  Aligned_cols=70  Identities=17%  Similarity=0.366  Sum_probs=46.9

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e------eeeccc-------CCCceEEEccC-----ccEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V------NIYLNT-------DTGGKYVVLSS-----GDLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~------~i~~~~-------~~~~ry~vlps-----G~L~I~nv~~   88 (129)
                      .|-.|.+..|.|.+.++ ..+|  -+.|++-.  .      .|....       ...+|+.+..+     --|+|.+++.
T Consensus        11 ~vkPg~sl~LsC~~SG~~~~~y--~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~   88 (126)
T d1dfbh1          11 LVQPGRSLRLSCAASGFTFNDY--AMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRA   88 (126)
T ss_dssp             EECTTCCEEEEEEEESSCGGGS--CEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEECCccccCC--cceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeecc
Confidence            56779999999999765 3333  46887732  1      122221       11467777532     3499999999


Q ss_pred             CCCCcceEEEeecc
Q psy5694          89 NDGYKSYRCRTVNK  102 (129)
Q Consensus        89 ~D~g~~Y~C~a~N~  102 (129)
                      ||.. .|.|.....
T Consensus        89 eDta-vYYCAr~~~  101 (126)
T d1dfbh1          89 EDMA-LYYCVKGRD  101 (126)
T ss_dssp             GGCE-EEEEEEEEC
T ss_pred             Ccce-EEEEEeccC
Confidence            9995 999976543

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=91.51  E-value=0.12  Score=35.28  Aligned_cols=69  Identities=19%  Similarity=0.341  Sum_probs=46.0

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--ee------eecc---------cCCCceEEEccC-----ccEEEecc
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--VN------IYLN---------TDTGGKYVVLSS-----GDLYVFNA   86 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~~------i~~~---------~~~~~ry~vlps-----G~L~I~nv   86 (129)
                      .|-.|.+..|.|.+.++ ..++  .++|++-.  ..      |.+.         ....+|+.+-.+     --|+|+++
T Consensus        11 ~vkpg~sl~LsC~~SG~s~s~~--~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~L   88 (131)
T d3c2ah1          11 LVKPGGSLRLTCVASGFTFSDV--WLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSL   88 (131)
T ss_dssp             EECTTCCEEEEEEEESSCGGGS--CEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             eECCCCCeEEEEEECCCCCcCC--cccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceecc
Confidence            56779999999998765 3332  46887632  11      2211         112468877432     33999999


Q ss_pred             CCCCCCcceEEEeec
Q psy5694          87 TPNDGYKSYRCRTVN  101 (129)
Q Consensus        87 ~~~D~g~~Y~C~a~N  101 (129)
                      +.||.. .|.|....
T Consensus        89 ~~eDTA-vYYCAR~~  102 (131)
T d3c2ah1          89 KTEDTA-VYSCTTDG  102 (131)
T ss_dssp             CGGGCE-EEEEEEEE
T ss_pred             ccCCce-EEEEeccc
Confidence            999995 99998663

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=91.34  E-value=0.19  Score=34.06  Aligned_cols=69  Identities=19%  Similarity=0.372  Sum_probs=46.6

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e------eeeccc-------CCCceEEEccC-----ccEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V------NIYLNT-------DTGGKYVVLSS-----GDLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~------~i~~~~-------~~~~ry~vlps-----G~L~I~nv~~   88 (129)
                      .|..|.+..|.|.+.++ ..+|  -++|++-.  .      .|.+..       ...+|+.|-.+     -.|+|.+++.
T Consensus        11 lvkpg~sl~LsC~~SG~~~~~~--~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~   88 (125)
T d1op3h1          11 LVKAGGSLILSCGVSNFRISAH--TMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRV   88 (125)
T ss_dssp             EEETTCCEEEEEEEESSCGGGS--CEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEeECCccCcCc--ccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCC
Confidence            67889999999998765 3333  36887732  1      122221       12468887531     2399999999


Q ss_pred             CCCCcceEEEeec
Q psy5694          89 NDGYKSYRCRTVN  101 (129)
Q Consensus        89 ~D~g~~Y~C~a~N  101 (129)
                      ||.. .|.|....
T Consensus        89 eDTA-vYYCAr~~  100 (125)
T d1op3h1          89 EDTA-IYYCARKG  100 (125)
T ss_dssp             GGCE-EEEEEEEC
T ss_pred             ccce-eEeEeecc
Confidence            9995 99998654

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=91.22  E-value=0.25  Score=33.23  Aligned_cols=68  Identities=18%  Similarity=0.335  Sum_probs=46.7

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e------eeeccc-------CCCceEEEcc--C---ccEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V------NIYLNT-------DTGGKYVVLS--S---GDLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~------~i~~~~-------~~~~ry~vlp--s---G~L~I~nv~~   88 (129)
                      .|-.|.+..|.|.+.++ ..+|  -++|.+-.  .      .|.+..       ...+|+.+..  +   --|+|+|++.
T Consensus        11 lvkPg~sl~LsC~~SG~s~s~y--~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~   88 (121)
T d2p49b1          11 LVQAGGSLRLSCAASGYAYTYI--YMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKP   88 (121)
T ss_dssp             EEETTCCEEEEEEEESCSSCCS--EEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEEcCCCcccC--ceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeeccc
Confidence            67889999999998765 4444  46887732  1      122221       1135888853  1   2399999999


Q ss_pred             CCCCcceEEEee
Q psy5694          89 NDGYKSYRCRTV  100 (129)
Q Consensus        89 ~D~g~~Y~C~a~  100 (129)
                      ||.. .|.|...
T Consensus        89 eDtA-vYYCAr~   99 (121)
T d2p49b1          89 EDTA-TYYCAAG   99 (121)
T ss_dssp             GGCE-EEEEEES
T ss_pred             ccee-EEeeecc
Confidence            9995 9999864

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.95  E-value=0.28  Score=31.22  Aligned_cols=55  Identities=16%  Similarity=0.321  Sum_probs=34.0

Q ss_pred             EeCCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeec
Q psy5694          32 ILGNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVN  101 (129)
Q Consensus        32 ~~GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N  101 (129)
                      -.-++++|.|....      ..+.|++|+..|... ....+-.-|        .-...|-.|.|+|.+..
T Consensus        20 ~~dGsV~L~Cn~~~------k~i~W~kdg~~i~~~-~~~~ktlnL--------G~~~~DPRGiY~C~g~~   74 (86)
T d1jbja1          20 RGDGSVLLTCGLTD------KTIKWLKDGSIISPL-NATKNTWNL--------GNNAKDPRGTYQCQGAK   74 (86)
T ss_dssp             SSSCEEEEECSSSC------SCEEEEETTEECCCS-SCCSSCCEE--------EETTSCCEEEEEEEESS
T ss_pred             ccCCeEEEEeCCCC------cEEEEecCCceeccc-ccccceeec--------CCcccCCCcceEcCCCc
Confidence            34678999998642      358999999776432 112222222        23455777799997654

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=89.61  E-value=0.3  Score=33.21  Aligned_cols=69  Identities=16%  Similarity=0.213  Sum_probs=47.1

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc--e---e---eeccc-------CCCceEEEcc-C----ccEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD--V---N---IYLNT-------DTGGKYVVLS-S----GDLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~--~---~---i~~~~-------~~~~ry~vlp-s----G~L~I~nv~~   88 (129)
                      .|..|.+..|.|.+.++ ..++  .++|++-.  .   -   |.+..       ...+|+.+.. +    --|+|++++.
T Consensus        10 ~~kPg~sl~LsC~~SG~~~~~~--~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~~   87 (130)
T d1rhhb1          10 VKKPGSSVQVSCKASGGTFSMY--GFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLRS   87 (130)
T ss_dssp             EECTTCCEEEEEEETTSCCTTC--EEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEEeCCCccCC--CcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccCC
Confidence            56789999999999876 4444  57897732  1   1   23211       1136877753 1    1299999999


Q ss_pred             CCCCcceEEEeec
Q psy5694          89 NDGYKSYRCRTVN  101 (129)
Q Consensus        89 ~D~g~~Y~C~a~N  101 (129)
                      ||.. .|.|....
T Consensus        88 eDtA-vYyCAr~~   99 (130)
T d1rhhb1          88 DDTA-VYYCARDF   99 (130)
T ss_dssp             GGCE-EEEEEEEC
T ss_pred             CCcE-EEEEEeec
Confidence            9995 99997654

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=88.53  E-value=0.12  Score=34.77  Aligned_cols=67  Identities=19%  Similarity=0.335  Sum_probs=45.5

Q ss_pred             EEEeCCeEEEEeeCCCC-CCCceeEeEEeecc-----e---eeecccC-------CCceEEEcc--C---ccEEEeccCC
Q psy5694          30 NVILGNTAVLRCQIPSY-MSEYIIVTSWIQDD-----V---NIYLNTD-------TGGKYVVLS--S---GDLYVFNATP   88 (129)
Q Consensus        30 ~V~~GntAvL~C~vp~~-~~~~v~v~sW~~d~-----~---~i~~~~~-------~~~ry~vlp--s---G~L~I~nv~~   88 (129)
                      .|-.|.+..|.|.+.++ ...|  .++|++-.     .   .|.+...       ..+|+.+..  +   --|+|++++.
T Consensus        11 ~vkpg~sl~LsC~~SG~s~~~y--~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~sL~~   88 (117)
T d1b2wh1          11 VVQPGRSLKLSCLASGYIFTSS--WINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNSLRP   88 (117)
T ss_dssp             EECTTSCEEEEEECCHHHHTTS--EECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECSCCG
T ss_pred             eECCCCCEEEEEEECCCCCcCC--ccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeeccccC
Confidence            57789999999999765 3343  46887732     1   2332211       125887753  2   2499999999


Q ss_pred             CCCCcceEEEe
Q psy5694          89 NDGYKSYRCRT   99 (129)
Q Consensus        89 ~D~g~~Y~C~a   99 (129)
                      ||.. .|.|..
T Consensus        89 eDTA-vYYCAr   98 (117)
T d1b2wh1          89 EDTA-VYYCAR   98 (117)
T ss_dssp             GGCE-EEECCE
T ss_pred             Ccce-EEEEcc
Confidence            9995 999964

>d1xiwb_ b.1.1.4 (B:) CD3 delta chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 delta chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.55  E-value=0.44  Score=29.51  Aligned_cols=49  Identities=18%  Similarity=0.381  Sum_probs=26.4

Q ss_pred             CCeEEEEeeCCCCCCCceeEeEEeecceeeecccCCCceEEEccCccEEEeccCCCCCCcceEEEeecc
Q psy5694          34 GNTAVLRCQIPSYMSEYIIVTSWIQDDVNIYLNTDTGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK  102 (129)
Q Consensus        34 GntAvL~C~vp~~~~~~v~v~sW~~d~~~i~~~~~~~~ry~vlpsG~L~I~nv~~~D~g~~Y~C~a~N~  102 (129)
                      -+.++|.|.         ..+.|++++..+..   .+.+-       |- -+-...|-.|.|+|.+...
T Consensus         9 e~~V~L~Cn---------~si~W~k~~~~~~~---~~~k~-------ln-LG~~~~DPRG~Y~C~~~e~   57 (74)
T d1xiwb_           9 EDRVFVNCN---------TSITWVEGTVGTLL---SDITR-------LD-LGKRILDPRGIYRCNGTDI   57 (74)
T ss_dssp             TTEEEEECS---------SCEEEEEECCCEEE---GGGTE-------EE-EEEGGGCCEEEEEEC----
T ss_pred             CCeEEEEcc---------CeeEEecCCccccc---CCccE-------ee-cCCcccCCCcceEeCCccc
Confidence            348999996         23899998743311   11111       21 1233456667999987643